BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006087
(662 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359484359|ref|XP_002280934.2| PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera]
gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/682 (63%), Positives = 513/682 (75%), Gaps = 27/682 (3%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY----LPSIRLFCKCSHAHA 56
MA G +VS+Q+R TS ++R+ S KCR SQ PS R FC+CSH
Sbjct: 1 MASGFVVSSQARVTSNFAVASISRVL--STKCRNSLISSQLCSSRAPSNRFFCECSH--- 55
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEA 116
++ D KY+E FSRRMAMAGLKPHHRIALGVSGGPDSMALC+LTA WKT G N GE+
Sbjct: 56 LQDPVDFIKYKEVFSRRMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGES 115
Query: 117 GEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
FIDGLLAI VDHGLR ESK+EANIV HRVSDMGIRCEI +CDWLDG+PKQGHLQEAAR
Sbjct: 116 RGFIDGLLAIIVDHGLRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAR 175
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY++FQ VCIQHQIGVLL+AHHADDQ ELFILRLSR+SGVLGLAGMAF+SQ+FS+Y
Sbjct: 176 EMRYQIFQNVCIQHQIGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTN 235
Query: 237 SCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
+ N+SILL IC+GGN++WVEDPTN++P F RNRIR+SL +L
Sbjct: 236 YFDEASDNYSILLVRPLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLP 295
Query: 283 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS 342
SC+FK ELQAVISACR+TR+YV+ +CSNLINE V+VM QGYAVIDLEIL+PSKIEDI LS
Sbjct: 296 SCTFKYELQAVISACRKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLS 355
Query: 343 KFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCS 402
KF+ALVLQFI QR RPVRGSTSKLLL YIRTFPCKTSLTAAGCYLC P S+GTK LVC
Sbjct: 356 KFIALVLQFISQRHRPVRGSTSKLLLDYIRTFPCKTSLTAAGCYLCAAPRSKGTKLLVCC 415
Query: 403 SIDGPLPSKLELFQIHSDGEQRHCV-TDVEQILEDAKSYSNHLIQDASDKLLLSMI-SDS 460
S++ PLPSK+ELF H +H + ++VEQI+ D K+ S++L+ DASD L + S+S
Sbjct: 416 SVNSPLPSKMELFYRHCYETHKHYIPSEVEQIIVDGKANSDNLVPDASDVQFLDVASSES 475
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQL-MHAVECVGTYPSIPLQP 519
+ EAKR N+LSESTY NIL LQ +E K FK ++ SD L MH V V T S+PLQP
Sbjct: 476 ILVEAKRRNILSESTYSNILSLQEDETKHFKSKTKTISDHDLKMHGVHTVSTSLSLPLQP 535
Query: 520 GQVCYFMNRFFVTWKLI-KENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRH 578
GQ+CYFMNRF V+W L K +G ++ E + L S + +C C+VG +MVAE+RH
Sbjct: 536 GQICYFMNRFLVSWNLSNKISGDKSPVEEASCNRDLAGKSLHHFCRHCMVGHDMVAEVRH 595
Query: 579 MIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSI 638
M+++DWLYLAKLSK + N ERV + Q EKT LC+D+ RLSA+RA+ SLKSI
Sbjct: 596 MVDADWLYLAKLSKHQNLENHEKERVILASAMEQISEKTILCSDFARLSAERALHSLKSI 655
Query: 639 PVAARRSLPVLVSSHGQLLSIP 660
PVAARRSLPVL++SHG LLSIP
Sbjct: 656 PVAARRSLPVLINSHGLLLSIP 677
>gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis]
gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis]
Length = 679
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/675 (59%), Positives = 478/675 (70%), Gaps = 41/675 (6%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MARG I+S+QSR V+ + KC+ TR F C + +
Sbjct: 1 MARGLILSSQSR---------VSLVPFLPPKCQKFMTR---------FFSCKSSSQI--- 39
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
DM KYREAFS RMAMAGLKP HRIA+GVSGGPDS+ALCVLTA WK+ G ++ F+
Sbjct: 40 -DMDKYREAFSHRMAMAGLKPQHRIAIGVSGGPDSVALCVLTAAWKSAGV---AKSEGFV 95
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ESKEEA +VS RVSDMG+RCEI C W GRPKQGHLQE ARDMRY
Sbjct: 96 DGLLAIVVDHGLRPESKEEAQVVSRRVSDMGVRCEIACCSWYRGRPKQGHLQEEARDMRY 155
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +C+QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAF+SQIF S A +
Sbjct: 156 QKLHSICLQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFTSQIFFSNAQPNDE 215
Query: 241 DLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
LKN SILL ICQ +DWVEDPTN+SPL+ RNRIRMSLG+LSS +F
Sbjct: 216 GLKNESILLARPLLHFSKEDMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTF 275
Query: 287 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 346
KSELQAVISACR+TR++V+ C NLIN+AVT++ QGYA+IDLEILNPSK+ DI L KFLA
Sbjct: 276 KSELQAVISACRKTRAFVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLA 335
Query: 347 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 406
LVLQFI QR +PVRGS +LLL YI TFPCK SLT AGCYLCP PGSRGTK LVC S+D
Sbjct: 336 LVLQFISQRYKPVRGSALRLLLDYICTFPCKKSLTVAGCYLCPAPGSRGTKVLVCCSVDC 395
Query: 407 PLPSKLELFQIHSDGEQRHCVT-DVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEA 465
PLPS++EL +HSDGE R VT ++EQIL D KSY +H + ASD L S+SV TEA
Sbjct: 396 PLPSRMELTSMHSDGELRQYVTSELEQILADGKSYLDHFVPGASDVYFLDSTSESVLTEA 455
Query: 466 KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYF 525
K+ N++SESTY+NILLLQR EIK FK +E + + VE V T S +PGQ+CYF
Sbjct: 456 KKVNIISESTYRNILLLQRNEIKHFKAKTEDNVNYVPKNEVESV-TASSSKFRPGQICYF 514
Query: 526 MNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWL 585
MNRF +TW+L K + F + +G ++ + + SC + M AE+RHMIE DWL
Sbjct: 515 MNRFLITWQLRKYILTTGFSVQSCCGWEVGGENCHHHSWSCTLDHGMFAEVRHMIECDWL 574
Query: 586 YLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRS 645
LAKL K S +L +R+F + Q +EK+NL +Y R SA+RA+ +LKSIP+AAR+S
Sbjct: 575 DLAKLLKCASLDDLHQQRIFTACEMEQTMEKSNLYLEYLRFSAERALTALKSIPIAARKS 634
Query: 646 LPVLVSSHGQLLSIP 660
LPVLV+ G LLSIP
Sbjct: 635 LPVLVNHQGHLLSIP 649
>gi|356522718|ref|XP_003529993.1| PREDICTED: uncharacterized protein LOC100818654 [Glycine max]
Length = 710
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/681 (56%), Positives = 471/681 (69%), Gaps = 27/681 (3%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKC----RIPFTRSQYLPSIRLFCKCSHAHA 56
MARG I+S+ + T +T L +++ S ++ +PS F S
Sbjct: 1 MARGLILSSPTLTATTCLFASISKTPPKSFNLSFGLKLIHHHYHLIPSPCSFSVDSSPSQ 60
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQ-NGE 115
D++KY E FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT G + E
Sbjct: 61 CS--IDISKYTETFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTAGADAVTSE 118
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
G FIDGLLAI VDHGLR ESKEEANIVSHRVS MGIRCEI CDW GRPKQG LQEAA
Sbjct: 119 NGGFIDGLLAIIVDHGLRAESKEEANIVSHRVSKMGIRCEIACCDWPSGRPKQGQLQEAA 178
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY++FQ+VC QH+IGVLLIA HADDQAELFILRLSRNSGVLGLAGM F+SQIF +Y
Sbjct: 179 REMRYQIFQEVCAQHRIGVLLIAQHADDQAELFILRLSRNSGVLGLAGMPFTSQIFPTYT 238
Query: 236 YSCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
S + N ILL ICQGG+ +WVEDPTN+SPL+ RNRIRM L +L
Sbjct: 239 QSYREVQANQGILLVRPLLEFSKEDMYKICQGGSENWVEDPTNQSPLYARNRIRMVLNNL 298
Query: 282 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
SS +FK ELQA+ISACR TR+YV+ + +LI +AV + D GY VIDL+IL P K+EDI L
Sbjct: 299 SSSAFKFELQALISACRITRTYVDQIAYSLIRDAVVIKDHGYVVIDLQILCPLKVEDICL 358
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
KFL+L+LQF+ QRQR +RGS KLL+ YIRTFPCK S+TAAGCYLCP PGSRG++ LVC
Sbjct: 359 MKFLSLILQFVSQRQRQIRGSALKLLMDYIRTFPCKNSVTAAGCYLCPDPGSRGSRVLVC 418
Query: 402 SSIDG-PLPSKLELFQIHSDGEQRHCV-TDVEQILEDAKSYSNHLIQDASDKLLLSMISD 459
+G P K+E F+ S G+Q CV ++E+I+E KSY+NHL+ DASD L + +
Sbjct: 419 CCSNGCAFPLKIEYFESQSQGQQGCCVANELEKIIEAEKSYANHLVLDASDVHFLDVNPE 478
Query: 460 SVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQP 519
V TEAKR N++ ESTY +I LQ++E F+ +EV SDS H V T S LQP
Sbjct: 479 LVLTEAKRLNIIGESTYNSIFALQKQETAHFRSKTEVISDSASKHGV----TPFSKSLQP 534
Query: 520 GQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHM 579
GQ CYFM+RF +TWKL + V + LGE++ + C+SC+ G+ V E+RHM
Sbjct: 535 GQFCYFMDRFILTWKLKNNIDNDKLSGLVDYEMDLGEETRSLCCTSCVAGNNKVPEVRHM 594
Query: 580 IESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIP 639
IESDWLYLA+LSK S N P V T Q +++T+ C Y +SAK+A+ LKSIP
Sbjct: 595 IESDWLYLAELSKYPLSKNFPQYEVKSVNGTKQIMDRTSPCLHYASVSAKQALRLLKSIP 654
Query: 640 VAARRSLPVLVSSHGQLLSIP 660
VAARRSLPVL++ GQLLSIP
Sbjct: 655 VAARRSLPVLINQQGQLLSIP 675
>gi|356529626|ref|XP_003533390.1| PREDICTED: uncharacterized protein LOC100777173 [Glycine max]
Length = 705
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/615 (60%), Positives = 447/615 (72%), Gaps = 20/615 (3%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQ-NGEAGEFI 120
DM+K E FSRRMAMAGL+PHHRIALGVSGGPDSMALCVLTAGWKT G + E G FI
Sbjct: 65 DMSKNTETFSRRMAMAGLEPHHRIALGVSGGPDSMALCVLTAGWKTAGADAVTPENGGFI 124
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ESKEEANIVSHRVS MGIRCEI CDW GRPKQG LQEAAR+MRY
Sbjct: 125 DGLLAIIVDHGLRAESKEEANIVSHRVSKMGIRCEIACCDWPSGRPKQGQLQEAAREMRY 184
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++FQ+VC QH+IGVLLIAHHADDQAELFILRLSRNSGVLGLAGM F+SQIF +Y S +
Sbjct: 185 QIFQEVCAQHRIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMPFTSQIFPTYKQSYRE 244
Query: 241 DLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
N IL+ ICQGG+ +WVEDPTN+SPL+VRNRIRM L +LSS +F
Sbjct: 245 VQANQGILVVRPLLEFSKEDMYKICQGGSENWVEDPTNQSPLYVRNRIRMVLNNLSSSTF 304
Query: 287 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 346
K ELQA+ISACR TR+YV+ + +LI +AV + D GYAVIDL+IL P K+EDI L KFL+
Sbjct: 305 KFELQALISACRITRTYVDQIGYSLIGDAVVIKDHGYAVIDLQILCPLKVEDICLMKFLS 364
Query: 347 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALV-CSSID 405
LVLQF+ QRQR +RG+ KLL+ YIRTFPCK S+TAAGCYLCP PGSRG + LV C S D
Sbjct: 365 LVLQFVSQRQRQIRGNALKLLMDYIRTFPCKNSVTAAGCYLCPDPGSRGFRVLVCCCSDD 424
Query: 406 GPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEA 465
LPSK+E F+ HS G+ ++ +I+E KSY+NHL+ DASD L + + V TEA
Sbjct: 425 CALPSKIEYFESHSQGQGCCVANELGEIIEAEKSYANHLVLDASDVHFLDVNPELVLTEA 484
Query: 466 KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYF 525
K+ N++ ESTY +L LQ++E F+ +EV SDS H V T S LQPGQ CY
Sbjct: 485 KKLNIIGESTYNTVLALQKQETAHFRSKTEVISDSASKHGV----TPFSKSLQPGQFCYL 540
Query: 526 MNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWL 585
M+RF +TWKL + V + +GE++ + C+SC+ G+ V E+RHMIESDWL
Sbjct: 541 MDRFILTWKLKTNTDNDELSGLVGYEMDMGEETRSLCCTSCVTGNNKVPEVRHMIESDWL 600
Query: 586 YLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRS 645
YLA+LSK S N P V T + +++T+LC Y +SAK+A+ LKSIPVAARRS
Sbjct: 601 YLAELSKYPLSKNFPQYEVESVNGTERIMDRTSLCLHYASVSAKQALRLLKSIPVAARRS 660
Query: 646 LPVLVSSHGQLLSIP 660
LPVL++ GQLLSIP
Sbjct: 661 LPVLINQQGQLLSIP 675
>gi|357500613|ref|XP_003620595.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|357500787|ref|XP_003620682.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|355495610|gb|AES76813.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|355495697|gb|AES76900.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
Length = 842
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/633 (56%), Positives = 434/633 (68%), Gaps = 42/633 (6%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNG-EAGEFI 120
DM KYR+ FSRRM MAG+KPHHRIALGVSGGPDS+ALCVLTAGWKT G N G ++ FI
Sbjct: 70 DMAKYRQVFSRRMDMAGIKPHHRIALGVSGGPDSIALCVLTAGWKTAGANSVGTDSSGFI 129
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR- 179
DGLLAI VDHGLR ESK+EANIV +RVS MGIRCEI CDW G+PKQGHLQ+AARDMR
Sbjct: 130 DGLLAIIVDHGLRAESKDEANIVRNRVSQMGIRCEIANCDWPSGKPKQGHLQKAARDMRR 189
Query: 180 -----------------YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222
Y++F VC +HQIGVL IAHHADDQAELFILRLSRNSGVLGLA
Sbjct: 190 WKTYVVNNCDREKMKEKYQVFHDVCAKHQIGVLFIAHHADDQAELFILRLSRNSGVLGLA 249
Query: 223 GMAFSSQIFSSYAYSCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPL 268
G F+SQIF + +S + N +LL IC+GG +WVEDPTN++ L
Sbjct: 250 GTPFTSQIFPMHTHSYCEVPANGGVLLVRPLLEFSKEDMYKICRGGTEEWVEDPTNQNQL 309
Query: 269 FVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 328
F RNRIR L LSS +FKSELQ VISACR+TR+YV+HVC +LI++AV + D GYAVIDL
Sbjct: 310 FTRNRIRRELNHLSSSAFKSELQRVISACRKTRAYVDHVCHSLIHQAVVIKDLGYAVIDL 369
Query: 329 EILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 388
+IL PSKIEDI+L KFL+LVLQF+ QRQR +RGS KLL+ Y+RT CK +TAAGCYLC
Sbjct: 370 QILCPSKIEDIYLLKFLSLVLQFVSQRQRQIRGSALKLLMDYLRTIQCKNCITAAGCYLC 429
Query: 389 PTPGSRGTKALVCSSIDGPLPSKLELFQIHS-DGEQRHCVTDVEQILEDAKSYSNHLIQD 447
P PGS+G++ LVC S+D LP K+E + S + H ++E+I+ED KS SNHL+ D
Sbjct: 430 PDPGSKGSRVLVCCSVDIALPLKMEFSETCSFRQHEYHVANELEKIIEDEKSNSNHLVLD 489
Query: 448 ASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVE 507
ASD L +SV EAKR N++SE T+ +IL+LQ++E RF+ SD H VE
Sbjct: 490 ASDVHFLDANPESVLDEAKRLNIISEPTFNSILVLQKQETNRFRSKVGAISDLASKHEVE 549
Query: 508 CVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCL 567
T LQPGQ CYFM+RF +TWKL + V L ++ N C+SC+
Sbjct: 550 -NATSSGNSLQPGQCCYFMDRFMLTWKLNDKMDRDVLSDLVDYGMDLSGEARNFCCTSCV 608
Query: 568 VGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLS 627
VG + V E+RHMIESDWLYLA+LS+ PLE + +EKT Y +S
Sbjct: 609 VGRDQVLEVRHMIESDWLYLAELSR-----YSPLENS--ANGNTKMMEKTASYLHYASVS 661
Query: 628 AKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
AK+A++ LKSIPVAARRSLPVL++ G+L+ IP
Sbjct: 662 AKKALVLLKSIPVAARRSLPVLINQQGKLICIP 694
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 401 CSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDS 460
CS+ PL ++L D + + + D KS SNHL+ ASD L +S
Sbjct: 731 CSNCGKPLQPTMKLSTQFIDPCFTNTKANKSLNISDEKSNSNHLVLYASDVYFLDANPES 790
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTS 498
+ EA+R N++SESTY +IL+L+ KLD +TS
Sbjct: 791 LLDEARRLNIISESTYNSILVLK-------KLDPFLTS 821
>gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
lyrata]
gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
lyrata]
Length = 664
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/684 (52%), Positives = 449/684 (65%), Gaps = 74/684 (10%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFT-----RSQYLPSIRLFCKCSHAH 55
MARG + + R +STLLS + R+S S + FT +S++ RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLSNSILRVSFS-FSPKTLFTSSYPHQSRHPKFSRLFC--NHA- 56
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D TKY+E F++RMAMAGLKPHHRIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 57 CVPETVDETKYKELFNKRMAMAGLKPHHRIALGVSGGPDSMALCVLTAKWKTEGLSCVNK 116
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
+ FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 117 SDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 176
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY++ VC +HQI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 177 REMRYQMISNVCFRHQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 236
Query: 236 YSCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
+KN SILL ICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 237 QLDAKHIKNRSILLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 296
Query: 282 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
S +FKSEL AVIS CRRTRS+V+ C++LI++ VTV D+GYA++DLE LNP++++DI L
Sbjct: 297 HSGNFKSELHAVISECRRTRSFVDKFCTDLISQTVTVTDKGYAILDLERLNPTEVKDICL 356
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
SK+LA VLQFI QR RPVRG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 357 SKYLAAVLQFISQRHRPVRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 416
Query: 402 SSIDGPLPSKLELFQI-HSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKL----LLSM 456
S+D PLPSK EL I ++ +++ D+ +I+ DA S S+H +A KL L +
Sbjct: 417 CSVDCPLPSKTELVNICVNEAQKKPTSDDLSKIISDATSISDH---EAPSKLFEVHFLVV 473
Query: 457 ISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP 516
S+SV ++A+ N+LSESTY I LLQR E RF +E S + H + ++
Sbjct: 474 ASESVLSKARELNLLSESTYTTIGLLQRNETNRFITTTEDKSVDESEHGTNIASSSDNVL 533
Query: 517 LQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAEL 576
L PGQ YFMNRF + W L A C +C V E+
Sbjct: 534 LLPGQNLYFMNRFLIRWNLSDHQCDEA------------------GCGNCPVRTATSMEV 575
Query: 577 RHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLK 636
RHM+ESDWLYLA+LSK + +++ S+++A+ SLK
Sbjct: 576 RHMVESDWLYLAELSKCSN-------------------------SNHSMSSSQKALRSLK 610
Query: 637 SIPVAARRSLPVLVSSHGQLLSIP 660
IP AAR+SLPVL++ G LLS+P
Sbjct: 611 LIPAAARKSLPVLINHCGLLLSVP 634
>gi|42572523|ref|NP_974357.1| protein raspberry 3 [Arabidopsis thaliana]
gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 660
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 356/680 (52%), Positives = 440/680 (64%), Gaps = 70/680 (10%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSS-----VKCRIPFTRSQYLPSIRLFCKCSHAH 55
MARG + + R +STLLS + R+S+S C P S RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLSNSIPRVSISFSPKTLFTCSYPLQSRHPKFSQRLFC--NHA- 57
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D T+Y+E F++RM MAGLKPH+RIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 58 CVPETVDETRYKELFNKRMDMAGLKPHNRIALGVSGGPDSMALCVLTAKWKTEGLSCVNK 117
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 118 TDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 177
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY + VC + QI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 178 REMRYEMISNVCFRQQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 237
Query: 236 YSCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
+KN SI L ICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 238 QLDAKHMKNQSIRLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297
Query: 282 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
S SFKSELQAVIS CRRTRS+V+ VC++LI++ VTV D+GYA++DLE LNPS ++DI L
Sbjct: 298 ESGSFKSELQAVISECRRTRSFVDKVCTDLIHQTVTVTDKGYAILDLERLNPSGVKDICL 357
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
SK+L VLQFI QRQRP+RG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 358 SKYLFAVLQFISQRQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 417
Query: 402 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKL-LLSMISDS 460
S+D PLPSK EL I + D+ QI+ DAKS+S+H+ + ++ L + S+S
Sbjct: 418 CSVDCPLPSKTELLNISFNETPSD---DLGQIIADAKSFSDHVAPTSLFEVQFLDVASES 474
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG 520
V ++A+ N+LSESTY I LLQR+E KRF +E S +L H + + L G
Sbjct: 475 VLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEKS-VELEHGTNIAASSDKVHLCLG 533
Query: 521 QVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMI 580
Q YFMNRF + W L + A C +C V E+RHM+
Sbjct: 534 QNLYFMNRFLIRWNLSDHQCNEA------------------DCRNCPVSTATSMEVRHMV 575
Query: 581 ESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPV 640
E DWLYLA+LSK + +++ S+++A+ SLK IP
Sbjct: 576 EPDWLYLAELSKCST-------------------------SNHSISSSQKALRSLKLIPA 610
Query: 641 AARRSLPVLVSSHGQLLSIP 660
AAR+SLPVLV+ G LL IP
Sbjct: 611 AARKSLPVLVNHCGLLLCIP 630
>gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana]
Length = 662
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 354/680 (52%), Positives = 441/680 (64%), Gaps = 70/680 (10%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSS-----VKCRIPFTRSQYLPSIRLFCKCSHAH 55
MARG + + R +STLL + R+S+S C P S RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLLNSIPRVSISFSPKTLFTCSYPLQSRHPEFSQRLFC--NHA- 57
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D T+Y+E F++RM MAGLKPH+RIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 58 CVPETVDETRYKELFNKRMDMAGLKPHNRIALGVSGGPDSMALCVLTAKWKTQGLSCVNK 117
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 118 TDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 177
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY + VC + QI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 178 REMRYEMISNVCFRQQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 237
Query: 236 YSCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
+KN SI L ICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 238 QLDAKHMKNQSIRLVGPLLDFWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297
Query: 282 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
S SFKSELQAVIS CRRTRS+V+ VC++LI++ VT D+GYA++DLE LNPS ++DI L
Sbjct: 298 QSGSFKSELQAVISECRRTRSFVDKVCTDLIHQTVTATDKGYAILDLERLNPSGVKDICL 357
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
SK+L+ VLQFI QRQRP+RG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 358 SKYLSAVLQFISQRQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 417
Query: 402 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKL-LLSMISDS 460
S+D PLPSK EL I + D+ QI+ DAKS+S+H+ + ++ L + S+S
Sbjct: 418 CSVDCPLPSKTELLNISFNETPSD---DLGQIIADAKSFSDHVAPTSLFEVQFLDVASES 474
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG 520
V ++A+ N+LSESTY I LLQR+E KRF +E S +L H + + + L G
Sbjct: 475 VLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEKS-VELEHGINIPASSDKVHLCLG 533
Query: 521 QVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMI 580
Q YFMNRF + W L N+ G C +C V E+RHM+
Sbjct: 534 QNLYFMNRFLIRWNLSDHQC---------NEAG---------CRNCPVSTATSMEVRHMV 575
Query: 581 ESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPV 640
ESDWLYL +LSK + +++ S+++A+ SLK IP
Sbjct: 576 ESDWLYLGELSKCST-------------------------SNHSISSSQKALRSLKLIPA 610
Query: 641 AARRSLPVLVSSHGQLLSIP 660
AAR+SLPVL++ G LL IP
Sbjct: 611 AARKSLPVLINHCGLLLCIP 630
>gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana]
Length = 614
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 319/591 (53%), Positives = 389/591 (65%), Gaps = 62/591 (10%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
ALGVSGGPDSMALCVLTA WKT G + + FIDGL+AI VDHGLR+ESK+EA +V
Sbjct: 58 ALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELVCS 117
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
RVS MGIRCEI CDW+DGRPK GHLQEAAR+MRY + VC + QI VLLIAHHADDQA
Sbjct: 118 RVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQA 177
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL--------------IC 251
ELFILRLSR+SGVLGLAG AF+S+IFS +KN SI L IC
Sbjct: 178 ELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKIC 237
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
Q G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC++L
Sbjct: 238 QWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCTDL 297
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
I++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+YI
Sbjct: 298 IHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLNYI 357
Query: 372 RTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVE 431
R PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D+
Sbjct: 358 RAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---DLG 414
Query: 432 QILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRF 490
QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E KRF
Sbjct: 415 QIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETKRF 474
Query: 491 KLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHN 550
+E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 475 LTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA------- 526
Query: 551 DGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKT 610
C +C V E+RHM+E DWLYLA+LSK +S
Sbjct: 527 -----------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCSTSN------------- 562
Query: 611 GQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPV 661
+ S+++A+ SLK IP AAR+SLPVLV+ G LL IPV
Sbjct: 563 ------------HSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIPV 601
>gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group]
Length = 693
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 279/626 (44%), Positives = 386/626 (61%), Gaps = 48/626 (7%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQN----GEAG- 117
+ Y AF+RRMA+AG+ PHHR+A+GVSGGPDSMALCVL A WK G + GE G
Sbjct: 49 LAPYHRAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGV 108
Query: 118 -EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
F+DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W +GRPK GH+QEAAR
Sbjct: 109 SGFVDGLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAR 168
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY+ +CI+ +I VLLIAHH+DDQAELF+LRLSRNSGVLGLAG AF SQ+F+
Sbjct: 169 EMRYQKLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLK 228
Query: 237 SCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
D+ + ++L ICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 229 YDGDNFSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 288
Query: 283 -SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
+F+SEL +I ACR TR+++++ CS ++ +++T+M+ GYAVIDLE L+P ++D+FL
Sbjct: 289 IEGTFQSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 348
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
S++LA VLQF+ QR RP+RG +++LL+ YIRT PCK +L+ AGCYLC P S+GTK LVC
Sbjct: 349 SRYLAYVLQFVSQRHRPLRGRSAQLLIDYIRTIPCKAALSVAGCYLCAVPRSKGTKVLVC 408
Query: 402 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLL-SMISDS 460
S+D S + + S +Q V+++ QI+ +A+ YS+ Q+ + S S
Sbjct: 409 CSVDLMESSSVHMSYKCSYVKQPPPVSEINQIVTEARIYSDQFRQNCPNTPFPSSKFSTD 468
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP---L 517
V +AK ++ + T + + LQ +E ++F E + L ++P + L
Sbjct: 469 VLNKAKDLKLIGDCTLEKLNYLQTDEHQKFITTKEHGQEQYLEKT-----SFPYLEVLNL 523
Query: 518 QPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELR 577
PG+ C+FM RF +TW+ EV +G DS C C+V + +R
Sbjct: 524 WPGETCHFMGRFLITWRT----------SEVVVNGMCLHDSQKHTCQYCMVNQDGSLAIR 573
Query: 578 HMIESDWLYLAKLSKGLS-SGNLPLERVFIDEKTGQKVEKTNLC--ADYGRLSAKRAILS 634
HM ++DWL+LA++ K S N D K+E L + Y +LSA +++
Sbjct: 574 HMFDTDWLFLAEVCKIHSLEENKNYSNALCD-----KLEDAKLVQHSRYLQLSAMKSLQI 628
Query: 635 LKSIPVAARRSLPVLVSSHGQLLSIP 660
L+SIP ARR LPVL +S G +LSIP
Sbjct: 629 LRSIPAPARRMLPVLTNSQGAVLSIP 654
>gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group]
Length = 694
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 277/624 (44%), Positives = 386/624 (61%), Gaps = 44/624 (7%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQN----GEAG- 117
+ Y AF+RRMA+AG+ PHHR+A+GVSGGPDSMALCVL A WK G + GE G
Sbjct: 50 LAPYHRAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGV 109
Query: 118 -EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
F+DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W +GRPK GH+QEAAR
Sbjct: 110 SGFVDGLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAR 169
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY+ +CI+ +I VLLIAHH+DDQAELF+LRLSRNSGVLGLAG AF SQ+F+
Sbjct: 170 EMRYQKLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLK 229
Query: 237 SCHDDLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
D+ + ++L ICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 230 YDGDNFSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 289
Query: 283 -SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 341
+F+SEL +I ACR TR+++++ CS ++ +++T+M+ GYAVIDLE L+P ++D+FL
Sbjct: 290 IEGTFQSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 349
Query: 342 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 401
S++LA VLQF+ QR RP+RG +++LL+ YIRT PCK +L+ AGCYLC P S+GTK LVC
Sbjct: 350 SRYLAYVLQFVSQRHRPLRGRSAQLLIDYIRTIPCKAALSVAGCYLCAVPRSKGTKVLVC 409
Query: 402 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLL-SMISDS 460
S+D S + + S +Q V+++ QI+ +A+ YS+ Q+ + S S
Sbjct: 410 CSVDLMESSSVHMSYKCSYVKQPPPVSEINQIVTEARIYSDQFRQNCPNTPFPSSKFSTD 469
Query: 461 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP---L 517
V +AK ++ + T + + LQ +E ++F E + L ++P + L
Sbjct: 470 VLNKAKDLKLIGDCTLEKLNYLQTDEHQKFITTKEHGQEQYLEKT-----SFPYLEVLNL 524
Query: 518 QPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELR 577
PG+ C+FM RF +TW+ EV +G DS C C+V + +R
Sbjct: 525 WPGETCHFMGRFLITWRT----------SEVVVNGMCLHDSQKHTCQYCMVNQDGSLAIR 574
Query: 578 HMIESDWLYLAKLSKGLS-SGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLK 636
HM ++DWL+LA++ K S N D+ K+ + + Y +LSA +++ L+
Sbjct: 575 HMFDTDWLFLAEVCKIHSLEENKNYSNALCDKLEDAKLVQH---SRYLQLSAMKSLQILR 631
Query: 637 SIPVAARRSLPVLVSSHGQLLSIP 660
SIP ARR LPVL +S G +LSIP
Sbjct: 632 SIPAPARRMLPVLTNSQGAVLSIP 655
>gi|224142149|ref|XP_002324421.1| predicted protein [Populus trichocarpa]
gi|222865855|gb|EEF02986.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 264/472 (55%), Positives = 322/472 (68%), Gaps = 57/472 (12%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL-------------- 249
QAELFILRLSRNSGVLGLAGMAF+SQ+FS + + KN IL+
Sbjct: 2 QAELFILRLSRNSGVLGLAGMAFTSQMFSKSTHLYREGSKNKGILIVRPLLHFSKEILYK 61
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 309
ICQ +DWVEDPTN++ ++ RNRIRMSLG+LSS +F+SELQ VISACRRTR+YV+ +C+
Sbjct: 62 ICQESGQDWVEDPTNQNTVYARNRIRMSLGNLSSYTFQSELQGVISACRRTRAYVDQICN 121
Query: 310 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 369
NLIN+AVT++D GYA+IDLEILNPSK+ DI LSKF+AL+LQ++ QR RP+RGSTSKLLLH
Sbjct: 122 NLINQAVTIIDHGYAIIDLEILNPSKVTDICLSKFVALILQYVSQRNRPIRGSTSKLLLH 181
Query: 370 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCV-T 428
YIRT PCKTS TAAGCYLCP P SRGTK LVC S+D PL SK+EL +GEQ+H
Sbjct: 182 YIRTVPCKTSFTAAGCYLCPAPRSRGTKILVCCSVDCPLNSKMELIYPFLNGEQKHYFRN 241
Query: 429 DVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 488
++EQI+ D KSYSNH + DASD L S+SV +EAK N++SESTY++ILLL+REEIK
Sbjct: 242 ELEQIIADGKSYSNHFVPDASDVHFLDA-SESVISEAKTLNIISESTYRDILLLKREEIK 300
Query: 489 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 548
FK E D + + VE + PS LQPG+ CYFMNRF++TWKL E
Sbjct: 301 HFKHKVEDKVDYKSKNKVESIIASPSELLQPGKACYFMNRFWITWKLSNH--------EC 352
Query: 549 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 608
H+ SC +G + VAE+R M ESDWLYLAKLSK S NL ++V
Sbjct: 353 HS-------------CSCRIGHDKVAEVRRMSESDWLYLAKLSKCPSLDNLQQQKVLS-- 397
Query: 609 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
S ++A+ LKSIPVAARRSLPVLV+ G LLSIP
Sbjct: 398 ------------------STQKALEVLKSIPVAARRSLPVLVNHQGLLLSIP 431
>gi|357139233|ref|XP_003571188.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Brachypodium
distachyon]
Length = 519
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/439 (50%), Positives = 291/439 (66%), Gaps = 27/439 (6%)
Query: 39 SQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL 98
S LP RL C + +V + + Y ++F+RRMA+AG+ P HRIA+GVSGGPDSMAL
Sbjct: 12 SPCLPLRRLLRCCCTSSSVSAPSPIAPYHQSFARRMALAGIHPEHRIAVGVSGGPDSMAL 71
Query: 99 CVLTAGWKTGGFNQNG-EAGE-------FIDGLLAITVDHGLREESKEEANIVSHRVSDM 150
CVL A WK + G ++GE F+DGLL + VDHGLR ES EEA +V RV M
Sbjct: 72 CVLVAAWKKAVDGEPGRKSGEDGSVGPGFVDGLLGVVVDHGLRPESAEEAQVVRDRVHGM 131
Query: 151 GIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210
G+ CEI +C+W +GRPK GHLQEAAR++RY+ +CI+ +IGVLLIAHH+DDQAELF+L
Sbjct: 132 GVLCEIAKCEWPNGRPKLGHLQEAAREIRYQKLLDICIKQRIGVLLIAHHSDDQAELFVL 191
Query: 211 RLSRNSGVLGLAGMAFSSQIFS-SYAYSCHDDLKNHSILL--------------ICQGGN 255
RLSRNSGVLGLAG AF SQ+F+ + Y H + + ILL ICQG N
Sbjct: 192 RLSRNSGVLGLAGTAFVSQLFAPNLKYDGH-NFSRYGILLVRPMLEFSKDDMYKICQGSN 250
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSS-CSFKSELQAVISACRRTRSYVEHVCSNLINE 314
WVEDPTN S + RNRIR SL LS+ +F SELQ +I AC+ TR++V++ CS ++ +
Sbjct: 251 NLWVEDPTNTSMQYARNRIRASLKCLSAEGTFLSELQRLIYACQLTRAHVDNTCSLVVKK 310
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
+VT+ + GY VIDLE L+P ++D+ LS++LA VLQF+ QR RP+RG +++L + YIR
Sbjct: 311 SVTITEYGYIVIDLEKLDPQNVDDLCLSRYLACVLQFVSQRHRPIRGRSAQLFMDYIRNT 370
Query: 375 PCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQIL 434
PCK +LT AGCYLC PGS+G K LVC S+D E+ S EQ V ++EQI
Sbjct: 371 PCKGALTVAGCYLCAFPGSKGAKILVCCSVDLMESFSAEMSYKCSYEEQPPPVPEIEQIN 430
Query: 435 EDAKSYSNHLIQDASDKLL 453
++ + + D D+LL
Sbjct: 431 QNVSKVLSKKLDD--DELL 447
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 623 YGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
Y +LSA +AI L+SIP +ARR+LPVL +S G +LSIP
Sbjct: 452 YLQLSATKAIEILRSIPASARRTLPVLTNSQGDILSIP 489
>gi|18404236|ref|NP_566753.1| protein raspberry 3 [Arabidopsis thaliana]
gi|14532774|gb|AAK64168.1| unknown protein [Arabidopsis thaliana]
gi|332643402|gb|AEE76923.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 462
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/472 (49%), Positives = 295/472 (62%), Gaps = 62/472 (13%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL-------------- 249
QAELFILRLSR+SGVLGLAG AF+S+IFS +KN SI L
Sbjct: 8 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 67
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 309
ICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC+
Sbjct: 68 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 127
Query: 310 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 369
+LI++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+
Sbjct: 128 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 187
Query: 370 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTD 429
YIR PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D
Sbjct: 188 YIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---D 244
Query: 430 VEQILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 488
+ QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E K
Sbjct: 245 LGQIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETK 304
Query: 489 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 548
RF +E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 305 RFLTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA----- 358
Query: 549 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 608
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 359 -------------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST------------- 392
Query: 609 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 393 ------------SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIP 432
>gi|194272234|gb|ACF37202.1| At3g24560 [Arabidopsis thaliana]
Length = 456
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 233/472 (49%), Positives = 295/472 (62%), Gaps = 62/472 (13%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL-------------- 249
QAELFILRLSR+SGVLGLAG AF+S+IFS +KN SI L
Sbjct: 2 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 61
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 309
ICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC+
Sbjct: 62 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 121
Query: 310 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 369
+LI++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+
Sbjct: 122 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 181
Query: 370 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTD 429
YIR PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D
Sbjct: 182 YIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---D 238
Query: 430 VEQILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 488
+ QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E K
Sbjct: 239 LGQIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETK 298
Query: 489 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 548
RF +E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 299 RFLTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA----- 352
Query: 549 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 608
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 353 -------------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST------------- 386
Query: 609 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 387 ------------SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIP 426
>gi|449467715|ref|XP_004151568.1| PREDICTED: uncharacterized protein LOC101213951 [Cucumis sativus]
gi|449531852|ref|XP_004172899.1| PREDICTED: uncharacterized LOC101213951 [Cucumis sativus]
Length = 435
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 197/378 (52%), Positives = 259/378 (68%), Gaps = 11/378 (2%)
Query: 285 SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKF 344
+F SEL A+ISACR+TR +++ VC +L N +T+ D GYA+I+LEILN KI+D+ L+KF
Sbjct: 37 TFNSELHAIISACRKTRLFIDQVCLSLANWTLTITDVGYAIINLEILNQFKIQDVCLAKF 96
Query: 345 LALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 404
+ LVLQFI QR RPVRG+T+KL+L YI+T PCKTSLTAAGCY+CP PGS+GT+ +VC S+
Sbjct: 97 VTLVLQFISQRHRPVRGNTAKLVLDYIQTGPCKTSLTAAGCYICPAPGSKGTRCIVCCSV 156
Query: 405 DGPLPSKLELFQIHSDGEQRHCVTD-VEQILEDAKSYSNHLIQDASDKLLLSMISDSVPT 463
D PLPSK+E+F S ++R V+D +EQI+ D KSY H I +ASD L S++V
Sbjct: 157 DCPLPSKIEVFHAPSYKKERRDVSDGLEQIINDGKSYLEHFIPEASDVHFLDATSETVLD 216
Query: 464 EAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVC 523
EAKR N+LSESTY+ I+ LQ +E K FK + +VT + H + V T S L+PGQ+C
Sbjct: 217 EAKRLNILSESTYRIIVSLQMQETKLFKAEPKVTPGHESKHGSQSVRTSSSGLLKPGQIC 276
Query: 524 YFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESD 583
+MNRFF+TW + EN EV++ N +C SCL+G +M E+RHM ESD
Sbjct: 277 NYMNRFFITWNIKDEN-------EVNST--FKAAGCNAFCKSCLLGCDMELEVRHMTESD 327
Query: 584 WLYLAKLSK-GLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAA 642
WLYL+KLSK + N R + GQ +E TN C + R SA+ A++ LK IPVAA
Sbjct: 328 WLYLSKLSKCSCTVKNCQNPRDTLASLEGQTMESTNRCLNSARSSAREALVLLKLIPVAA 387
Query: 643 RRSLPVLVSSHGQLLSIP 660
RRSLPVLV+ G LLSIP
Sbjct: 388 RRSLPVLVNHQGLLLSIP 405
>gi|449467459|ref|XP_004151440.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Cucumis sativus]
Length = 315
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/297 (58%), Positives = 218/297 (73%), Gaps = 22/297 (7%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MA+G I + + + L S +++++S + +P + LP R FC S +++
Sbjct: 1 MAQGLIQTGTNHSFFFLSSK--SKIAISFI---LPSFHLRVLPLPRCFCSYS---SLQQP 52
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
D+ YRE FS+RM MAGLKPHHRIALGVSGGPDSMALCVLTAGWK G + ++ +
Sbjct: 53 IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLV 112
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ES++EA +V +RV+ +GIRCE+ CDW++GRPKQGHLQEAARDMRY
Sbjct: 113 DGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRY 172
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ QKVC+QH IGV+L+AHHADDQAELFILRLSR+SGVLGLAG+ F+SQIFSS+ YS +
Sbjct: 173 QMLQKVCVQHNIGVILVAHHADDQAELFILRLSRSSGVLGLAGIPFTSQIFSSHTYSYSE 232
Query: 241 DLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
KN+ +LL ICQ N+DWVEDPTNRS LF RNRIRMSLGDLSS
Sbjct: 233 VSKNYGVLLVRPLMDFSKDDMYKICQAANQDWVEDPTNRSSLFARNRIRMSLGDLSS 289
>gi|449525579|ref|XP_004169794.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Cucumis sativus]
Length = 315
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/297 (58%), Positives = 217/297 (73%), Gaps = 22/297 (7%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MA+G I + + + L S +++++S + +P + LP R FC S +++
Sbjct: 1 MAQGLIQTGTNHSFFFLSSK--SKIAISFI---LPSFHLRVLPLPRCFCSYS---SLQQP 52
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
D+ YRE FS+RM MAGLKPHHRIALGVSGGPDSMALCVLTAGWK G + ++ +
Sbjct: 53 IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLV 112
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ES++EA +V +RV+ +GIRCE+ CDW++GRPKQGHLQEAARDMRY
Sbjct: 113 DGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRY 172
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ QKVC+QH IGV+L+AHHADDQAELFILRLSR SGVLGLAG+ F+SQIFSS+ YS +
Sbjct: 173 QMLQKVCVQHNIGVILVAHHADDQAELFILRLSRTSGVLGLAGIPFTSQIFSSHTYSYSE 232
Query: 241 DLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
KN+ +LL ICQ N+DWVEDPTNRS LF RNRIRMSLGDLSS
Sbjct: 233 VSKNYGVLLVRPLMDFSKDDMYKICQAANQDWVEDPTNRSSLFARNRIRMSLGDLSS 289
>gi|186510383|ref|NP_974358.2| protein raspberry 3 [Arabidopsis thaliana]
gi|332643400|gb|AEE76921.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 446
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 207/450 (46%), Positives = 263/450 (58%), Gaps = 77/450 (17%)
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 300
DL + ICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRT
Sbjct: 14 DLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRT 73
Query: 301 RSYVEHVCSNLINEAVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLALVLQ--------- 350
RS+V+ VC++LI++ VTV DQ GYA++DLE LNPS ++DI LSK+L VLQ
Sbjct: 74 RSFVDKVCTDLIHQTVTVTDQKGYAILDLERLNPSGVKDICLSKYLFAVLQVLHLEFFSL 133
Query: 351 -------------------FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTP 391
FI QRQRP+RG+TSKLLL+YIR PC+TSLTAAGCYL P P
Sbjct: 134 VKLLPFECFLDYSLLSNLQFISQRQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAP 193
Query: 392 GSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDK 451
GS+GTK +V S+D PLPSK EL I + D+ QI+ DAKS+S+H+ + +
Sbjct: 194 GSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---DLGQIIADAKSFSDHVAPTSLFE 250
Query: 452 L-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVG 510
+ L + S+SV ++A+ N+LSESTY I LLQR+E KRF +E S +L H
Sbjct: 251 VQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEKS-VELEHGTNIAA 309
Query: 511 TYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGD 570
+ + L GQ YFMNRF + W L + A C +C V
Sbjct: 310 SSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA------------------DCRNCPVST 351
Query: 571 EMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKR 630
E+RHM+E DWLYLA+LSK +S + S+++
Sbjct: 352 ATSMEVRHMVEPDWLYLAELSKCSTSNH-------------------------SISSSQK 386
Query: 631 AILSLKSIPVAARRSLPVLVSSHGQLLSIP 660
A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 387 ALRSLKLIPAAARKSLPVLVNHCGLLLCIP 416
>gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 569
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 248/468 (52%), Gaps = 26/468 (5%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGGPDSMALC++ W G F E+G F + I VDHGLR ES EA V
Sbjct: 1 AIAVSGGPDSMALCLVAKEWWKG-FR---ESGVFAERPTGIVVDHGLRPESAAEALQVQR 56
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
V D+G C +++CDWL+GRP GHLQEAAR+ RY L ++ C +H IG LL HHADDQA
Sbjct: 57 WVLDLGFECHVLKCDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQA 116
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD----------DLKNHSILLICQGGN 255
ELF++RL+R+SG++GLAGMA S FS S + +C+
Sbjct: 117 ELFMMRLARSSGIIGLAGMASRSYFFSRRPVSQDQTGLLLVRPLLQFSKQDLYTVCKKAG 176
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
++W+EDPTN + F RNRIR L D + ++ +I+ACR+TR+ ++ L+ +
Sbjct: 177 QEWIEDPTNFNHKFARNRIRQVLADPLYDDARRQIHPLIAACRQTRAMLDRERDGLLAKI 236
Query: 316 VTV-MDQGYAVIDLEILNPSKIEDIFLSKFLALVL----QFICQRQRPVRGSTSKLLLHY 370
VT+ D GY ID+++L S I D L + + VL QF+ QR++P RG K+ +
Sbjct: 237 VTISKDFGYISIDVDLLASSNISDAVLGRVVVAVLQARSQFVAQREKPPRGKALKIFMDK 296
Query: 371 IRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP---SKLELFQIHSDGEQRHCV 427
+R + T AGC++ P PGS+G+K +VC S + P P S L ++ +S + +
Sbjct: 297 LRQPSFNEAFTLAGCHVSPVPGSKGSKVMVCLSPESPTPSLGSDLSPWEPNSVLARSNLN 356
Query: 428 TDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEI 487
Q+L K + I D S SV + ++ ++SE + L+ E
Sbjct: 357 PRGVQLLNSEKVCYDEGIPPILDA---SKGGSSVLEQGRKLGLVSEEVATLLNSLRTEIA 413
Query: 488 KRFKLDSEVTSDSQLMHAVECVGTYPSIPLQP-GQVCYFMNRFFVTWK 534
+ EV + G + P G CYFMNRF V+W+
Sbjct: 414 ETMSRTIEVCKKGDKRLELSPYGLDIRKQMLPFGHTCYFMNRFLVSWE 461
>gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
Length = 1167
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 200/616 (32%), Positives = 288/616 (46%), Gaps = 103/616 (16%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D F ++M +AG+ R+A+ VSGG DSMALC+L W E+ +
Sbjct: 26 DFKNASAVFHKKMEVAGVSCRDRVAIAVSGGADSMALCLLALEWT--------ESKSLVF 77
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
GL TVDHG R ES EE V + +G+ CEI++C W G P GHLQE+AR RY
Sbjct: 78 GL---TVDHGFRRESAEEVVQVREWLRTLGMECEILKCSWQGGFPSPGHLQESARKARYE 134
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS--------- 232
L Q+ C ++ GVLL AHHADDQAELF LRLSR SG GLA MA +S++F
Sbjct: 135 LLQEACQRNGAGVLLTAHHADDQAELFALRLSRCSGDNGLACMALASELFPIMPSIIEAS 194
Query: 233 -SYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQ 291
DL+ + +C ++ W+EDPTN ++ RN+IR L LS S +SE+Q
Sbjct: 195 RLLLVRPLLDLQKKDLYNVCHVADQSWIEDPTNCKTIYARNKIRKELVSLSD-SMRSEVQ 253
Query: 292 AVISACRRTRSYVEHVCSNLINEAVTV-MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQ 350
+I+ R+ RS + L+ V + +D GYAV+D E L + L LA VL+
Sbjct: 254 DLIATYRKKRSEIHVQTKMLMTTFVHIDLDYGYAVVDAEGLLAETNDTTVLETLLASVLR 313
Query: 351 FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPS 410
F+ QR +P +G+ + +I + LT AGC LC PG++ +K LV S D P P
Sbjct: 314 FVSQRPKPAKGTAVRGARAWITKRGTEGRLTVAGCSLCLQPGTQTSKVLVTYSPDSPRPG 373
Query: 411 KLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNM 470
+ Q + T E I + Y+N +I DA +ISD+ A +
Sbjct: 374 SIGSRQQNEPASS----TKKESIA--CRKYAN-VIHDARQA---KIISDAT---ASFLCL 420
Query: 471 LSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFF 530
L+E ++L REE++ DSEV S Q +V L P + Y+M R+
Sbjct: 421 LAEEMAADMLPKAREEVQE---DSEVAS-QQPDESV----------LFPNENTYYMKRYL 466
Query: 531 VTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVG-----DEMVAELRHMIESDWL 585
++W ++ S C C G A++RH+ +D L
Sbjct: 467 ISWWQRSDDRS---------------------CKGCFNGTCSLRTAKFAKIRHLNRNDLL 505
Query: 586 YLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRS 645
+ + + L+ G L R LKS+P RR
Sbjct: 506 EVRQ--RALNDGTL-------------------------RTDIHDGWRKLKSLPEYVRRG 538
Query: 646 LPVLVSSHGQLLSIPV 661
LPVL++ +L ++P+
Sbjct: 539 LPVLITKDNELFAVPI 554
>gi|413936437|gb|AFW70988.1| hypothetical protein ZEAMMB73_303298 [Zea mays]
Length = 290
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/248 (54%), Positives = 166/248 (66%), Gaps = 24/248 (9%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE-----AGEFI 120
Y +F+RRMA+AG+ PHHRIA+GVSGGPDSMALCVL WK + G+ A F+
Sbjct: 39 YHASFARRMALAGIHPHHRIAVGVSGGPDSMALCVLATAWKKAAGRKAGDEEDPVASAFV 98
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W G PKQG +QEAAR++RY
Sbjct: 99 DGLLGVVVDHGLRPESADEARLVRDRVRGMGVECEIANCEWPYGPPKQGKVQEAAREVRY 158
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +CI+ QIG+LLIAHH+DDQAELF+LRLSR SGVLGLAG AF SQ+F+S +
Sbjct: 159 QKLLDICIKQQIGILLIAHHSDDQAELFVLRLSRQSGVLGLAGTAFVSQLFASNVKYDGE 218
Query: 241 DLKNHSILL--------------ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
+ + ILL ICQG N+ WVEDPTN S + RNRIR SL LS
Sbjct: 219 RFRRYGILLVRPMLEFSKDDMYKICQGSNQPWVEDPTNTSMKYARNRIRASLRKLS---- 274
Query: 287 KSELQAVI 294
+E QAV+
Sbjct: 275 -TEGQAVL 281
>gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism]
Length = 460
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 160/341 (46%), Gaps = 21/341 (6%)
Query: 68 EAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+AF+ MA G + + R+A+ VSGG DSMALC+L W AG A+
Sbjct: 21 DAFAGMMAAVGPFEANSRLAVAVSGGGDSMALCLLAQRW----------AGRRRGSTTAL 70
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V + G+ ++ +W +P G +Q AAR RY L
Sbjct: 71 TVDHGLRPEAADEARQVGRWLKARGVAHHVL--EWRGPKPVSG-IQAAARAARYGLMTAW 127
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + LL+AHH +DQAE F+LRL R SG+ GL+ MA + + +
Sbjct: 128 AREAGVLHLLVAHHQEDQAETFLLRLERGSGIDGLSAMAAIVETPAVRLVRPLLGVPRAR 187
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA-VISACRRTRSYVE 305
+ + ++W+EDP+NR F R RIR +L L+ + A + R +E
Sbjct: 188 LRATARAFGQEWLEDPSNRDAAFARTRIRAALPALARSGMSPAVLAEKANRVGHVRIALE 247
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSK 365
+ S L+ TV GYA +D I+ + ED+ + LA +L + R+ R +
Sbjct: 248 NAASALLAVCCTVHPAGYARLDQSIVA-AAPEDVSF-RALARILMCVGGREYAPRREKLE 305
Query: 366 LLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 406
L + + T GC + + G + LVC + G
Sbjct: 306 RLYAVVVGGKLGKARTLGGCRIL----AEGYRILVCREMRG 342
>gi|406990114|gb|EKE09798.1| tRNA(Ile)-lysidine synthase [uncultured bacterium]
Length = 421
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 34/325 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGGPDS+AL LT + Q + A+TV+HGLR S++EA V
Sbjct: 19 VAVAVSGGPDSLALLHLTHAYALKKKKQ----------IFALTVNHGLRHNSEKEALFVK 68
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
GI I+ +W++ +P +QE AR+ RY L K C + I LL+ HH DQ
Sbjct: 69 KIAEGKGIPHVIL--NWIEDKP-FSRIQEKAREARYHLLLKWCKDNAIPTLLLGHHQQDQ 125
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQ-----IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL SG+ GL GM + + + + + + LK LI + + W+
Sbjct: 126 EETFWLRLFSGSGLDGLTGMKYRIEREGILVVRPFLFFSKERLK---ATLIAE--KQGWI 180
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
EDP+N++ + R R R S + S K+ L V++ + ++++ +++ V +
Sbjct: 181 EDPSNKNTTYFRGRFR-SFAEKEGLS-KARLLNVMTKLQEDADFIQNSLKEALHQTVHLF 238
Query: 320 DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTS 379
++GY I E K+ + ++ ++++ + P R + +L ++T +
Sbjct: 239 EEGYFSIQNEAFE--KLHPALAKRMISFLVRWFSKDSYPPRSTQVGEILKKLKT---TKA 293
Query: 380 LTAAGCYLCPTPGSRGTKALVCSSI 404
T+ G Y P + T+ LV +
Sbjct: 294 FTSGGAYWIP----QATEILVLREV 314
>gi|407771730|ref|ZP_11119081.1| ATPase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407285272|gb|EKF10777.1| ATPase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 490
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 133/259 (51%), Gaps = 20/259 (7%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR M + G + +IA+ VSGG DSMAL +L W ++ GE L AITV
Sbjct: 25 FSRLMNVFGPFEDRPKIAVAVSGGADSMALALLAHEWCG---SKGGE-------LTAITV 74
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR E+ EEA V ++ GI I+ C W +P+ G +QEAAR RY L +
Sbjct: 75 DHGLRAEAAEEAIRVGEQLRKHGIDHRIL-C-WDGAKPQSG-IQEAARKARYDLLDRALG 131
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ I LL+AHH DDQ E ++R R SGV+G AGMA + ++ + ++
Sbjct: 132 EMDILHLLVAHHRDDQHETLVMRQQRESGVIGRAGMAARRYLRNARVLRPLLPVAKVDLI 191
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 308
+ +DW+EDP+NR+ F R RIR + + + + TR E+
Sbjct: 192 ATLRTRQQDWIEDPSNRNVRFERVRIR------HNPMMDGPKKETVQSAADTRQTAEYRI 245
Query: 309 SNLINEAVTVMDQGYAVID 327
++L+ AV + + G A ID
Sbjct: 246 ADLLASAVQIANCGIARID 264
>gi|344924498|ref|ZP_08777959.1| tRNA(Ile)-lysidine synthetase [Candidatus Odyssella
thessalonicensis L13]
Length = 368
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
M P +A+ VSGGPDSM LC L W+ G +Q L A+ VDHGLR E
Sbjct: 1 MGPFAPGCHLAVAVSGGPDSMVLCHLLRCWQLQGQDQK---------LTALIVDHGLRPE 51
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
S EEA I R+ +GI I++ W D +P +QE AR RY L + C QH I L
Sbjct: 52 SAEEAQITQQRLQKLGIESVILK--WQDPKPT-TRIQERARQARYHLLEAWCQQHGIIHL 108
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
L AHHADDQ E + RL +NSG GL G + + F + K + Q G
Sbjct: 109 LTAHHADDQWETVVSRLQKNSGSSGLRGILPIRYRPFGRLLRPLLNFTKAEIYAYLVQVG 168
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
D+V DP+N + ++R R+R L SF +
Sbjct: 169 G-DYVVDPSNANLKYLRVRLRQDRPVLEQSSFPA 201
>gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
Length = 462
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 115/238 (48%), Gaps = 23/238 (9%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
M K+ E R GL P +AL VSGG DS++LCVL A ++
Sbjct: 1 MQKFIEVVER----YGLTPSTPVALAVSGGVDSISLCVL--------------ARQYFQK 42
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L AITVDH LR ES +EA V+ + + I +IV C+W + +QE AR RYRL
Sbjct: 43 LFAITVDHRLRAESSQEAQNVNEILDKLNIPHKIVSCNW-NQEVNFRKVQELARLKRYRL 101
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA----YSC 238
+ C I LL HH +DQ E FI RLS SG+ GL+ M S + +
Sbjct: 102 LGEECQNQNIQYLLTGHHLNDQIETFIFRLSCKSGIDGLSCMKLSQNLRLHFPPITLIRP 161
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
+ + +C W+EDP+N S ++ RN+IR L L + S L ++++
Sbjct: 162 LLSFQKTQLQEVCHQNKVIWIEDPSNMSLMYKRNQIRQGLAALQNSSKNISLTTLVAS 219
>gi|456352854|dbj|BAM87299.1| tRNA(Ile)-lysidine synthase [Agromonas oligotrophica S58]
Length = 363
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 11/211 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L +SGGPDSMAL L A W++ E+G L+A+TVDHGLR ES EA +V
Sbjct: 36 LVLAISGGPDSMALMWLAARWRS-----TLESGPR---LVAVTVDHGLRRESAREARMVK 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI VR W D +P+ G + EAAR RYRL + Q + AH DDQ
Sbjct: 88 EVAGRLGIPHRTVR--WRDAKPEAG-IPEAARLARYRLLARAARQAGASHVATAHTRDDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RL R SG++GLA MA S+ +L ++ + + + +DPTN
Sbjct: 145 AETVLMRLLRGSGIVGLAAMAAISEREGLLLARPLLELPKARLVATLRSADVPFADDPTN 204
Query: 265 RSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
R P F R R+R + L++ S A ++
Sbjct: 205 RDPAFTRPRLRALMPALAAEGGDSRTLATLA 235
>gi|440798300|gb|ELR19368.1| tRNA(Ile)lysidine synthetase [Acanthamoeba castellanii str. Neff]
Length = 578
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 127/276 (46%), Gaps = 78/276 (28%)
Query: 85 IALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
IA+ VSGGPDSMALC+LT W K G +LA+TVDHGLR ES EEA
Sbjct: 14 IAIAVSGGPDSMALCLLTHHWAKKRGIK-----------VLALTVDHGLRPESGEEAK-- 60
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
GIR EI+ W D + GH+QEAAR RY L + C I LL AH +D
Sbjct: 61 ------RGIRHEILHRPW-DKPAQPGHIQEAARKHRYMLLYEKCRSEGIHNLLTAHQLED 113
Query: 204 QAELFILRLSRNSGVLGLAGM---------------------------------AFSSQI 230
Q E FI+RL+ SGV GLAG+ S+Q
Sbjct: 114 QVETFIMRLAHFSGVDGLAGIQKRHAQFFPPVPPGSGSAKAAMTSTRLAPPLFPPLSNQT 173
Query: 231 FSSYAYSCHD----------DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLG- 279
++ + + ++ ++ C ++ V+DPTN++ F RNRIR +L
Sbjct: 174 LNTPSSDSYPSPLYIVRPLLEVSKDRLMATCAHFGQEAVDDPTNQNMTFHRNRIRQALPL 233
Query: 280 --------DLSSCSF-----KSELQAVISACRRTRS 302
DLS + ++E+QA ++A RT S
Sbjct: 234 LWETIGKEDLSRTIYHFQKARNEMQAEVNAIMRTHS 269
>gi|414175494|ref|ZP_11429898.1| tRNA(Ile)-lysidine synthetase [Afipia broomeae ATCC 49717]
gi|410889323|gb|EKS37126.1| tRNA(Ile)-lysidine synthetase [Afipia broomeae ATCC 49717]
Length = 347
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL L A W+ A + LLAITVDHGLR+E+ EA V
Sbjct: 27 VVLAVSGGPDSMALMWLAARWR--------RALKKGPRLLAITVDHGLRKEAAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI +R W +PK G L AARD RYRL + H + AH DDQ
Sbjct: 79 QLARALGIEHRTLR--WRGEKPKTG-LPSAARDARYRLLLRAASSHGASHVFTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE I+RLSR SG+ GLA MA S D+ ++ + +DPTN
Sbjct: 136 AETVIMRLSRGSGIAGLAAMARQSDRGGVVLARPFLDVPKSRLIATLAKAGIAFADDPTN 195
Query: 265 RSPLFVRNRIR 275
P F R R+R
Sbjct: 196 HDPRFTRPRLR 206
>gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 806
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 168/373 (45%), Gaps = 56/373 (15%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R + G P +A+ +SGG DS+ L +L + E + LLAITVDH L
Sbjct: 114 RHKLVGQYP---LAVALSGGADSLTLTLLLDEYLR-------ECEQKAASLLAITVDHQL 163
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDW--------LDGRPKQGHLQEAARDMRYRLFQ 184
R ES+EEA V + GI I DW +DG+PK+ +Q AR RY +
Sbjct: 164 RAESREEAEYVHKICEERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLE 223
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL-- 242
C + + L + H DDQ E + RL+R SGV GLAGM ++ F + H L
Sbjct: 224 HKCRKVSVKYLFVGHTLDDQEETILYRLARGSGVNGLAGMDPITKWFWNEEMGEHIYLIR 283
Query: 243 ------KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR----MSLGDLSSCSFKS--EL 290
K+ Q ++DW+EDP+N S F R RIR M GD +F S L
Sbjct: 284 PLLSVPKSRLQQTCMQRFHQDWIEDPSNHSDTFDRVRIRKVMAMIRGDSGEGAFDSLLPL 343
Query: 291 QAVISACRRTRSYVEHVCSNLINEAVT--VMDQGYAVIDLEILNPSKIEDIFLSKFLALV 348
Q + + ++ +E N+A+ + + + + L++ E++ + + L +
Sbjct: 344 QQIATEAKKNFRKLE-------NKALEKHITEWSPSRVTLDVAFQDGYEEL-IYRVLIRI 395
Query: 349 LQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCY---------LCPTPGSRGTKAL 399
L ++ +++ P R S+ +LH + C +T GC LC P R T+
Sbjct: 396 LCYVGKKEHPPRHSSVSKVLHDLDQLTCGKQITIHGCVVKKVEKGRLLCFQPEHRRTE-- 453
Query: 400 VCSSIDGPLPSKL 412
S D LP K+
Sbjct: 454 ---SFDPFLPCKM 463
>gi|365881468|ref|ZP_09420778.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 375]
gi|365290383|emb|CCD93309.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 375]
Length = 363
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 102/194 (52%), Gaps = 11/194 (5%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDSMAL L A W+ G NG L+AIT+DHGLR E++ EA +V H
Sbjct: 41 SGGPDSMALLWLAARWRRG--RSNGPR------LVAITLDHGLRSEARREAQMVKHIARQ 92
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+ + VR W D +P G + EAAR RYRL + Q +L AH DDQAE +
Sbjct: 93 LDVPHRTVR--WTDAKPATG-IPEAARLARYRLLARAARQAGASHVLTAHTRDDQAETVL 149
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLF 269
+RL R SG++GLA MA S +L ++ + + + +DPTNR P +
Sbjct: 150 MRLLRGSGIVGLAAMAPVSAREGLLLARPLLELSKARLVATLRSADIPFADDPTNRDPAY 209
Query: 270 VRNRIRMSLGDLSS 283
R R+R + L++
Sbjct: 210 TRPRLRALMPALAA 223
>gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis]
Length = 556
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 114/219 (52%), Gaps = 10/219 (4%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNG----EAGEFIDGLLAITVDHGLR 133
GL+ R+A+ +SGGPDS+AL +T W+ GF +N + LA+ VDH LR
Sbjct: 15 GLRSSDRVAVALSGGPDSLALASMTVWWQ--GFVRNQVLRRDRLRSQQTPLALIVDHKLR 72
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
ES EEA+ V+ + +G++ ++ W G QG AAR+ RY + C +
Sbjct: 73 PESTEEAHAVAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAAREARYAALLRACGEMGRT 132
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY--SCHDDLKNHSILL-- 249
LL+AHHADDQAE F+LRL SGV+GLA M ++ + + L H L
Sbjct: 133 HLLLAHHADDQAETFLLRLLHASGVVGLACMPAVAEKRTEFGRIKVVRPLLGFHKAELEA 192
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
CQ ++ DPTN + RNRIR L + S + +S
Sbjct: 193 YCQRSRLPYIVDPTNSELSYHRNRIRHVLRQMPSLADRS 231
>gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
Length = 418
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 134/285 (47%), Gaps = 18/285 (6%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G P R+ + VSGG DS+AL L F+ GE ++ +LA TVDHGLR+ES
Sbjct: 17 GASPPPRVGVAVSGGGDSLALLHLL----KSCFD-----GEPVE-ILAATVDHGLRKESA 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EEA + +G+R E++ W DG + G+LQE AR RY L ++ I +L +
Sbjct: 67 EEAKWTAEVARGLGLRHEVL--IWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTL 124
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
H ADDQAE ++RLSR GV GLAG+ + +++ ++ + D
Sbjct: 125 GHTADDQAETVLMRLSRAGGVNGLAGIPQRRTLNGVTLLRPLLEVRREALRSYLRDEGHD 184
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRSYVE-HVCSNLINEA 315
W++DP+N F R R R +L +L+ L V + R ++ HV L
Sbjct: 185 WIDDPSNDDSRFERVRFRKALENLAELGITVPALATVAQNMSKARKALDWHVF--LAARD 242
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 360
+ + G V DL + D + L +Q+I P R
Sbjct: 243 IARFEAGAMVFDLRKFR--TLPDEIAHRLLQQAIQWISGNPYPAR 285
>gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
Length = 351
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 44/350 (12%)
Query: 52 SHAHAVEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGG 109
+H + +L D ++K FS + L +A+ VSGGPDS+AL L +
Sbjct: 12 THKQILSFLKDRKISKVYSEFS-----SSLNSEENLAVAVSGGPDSLALAYLAKCYSI-- 64
Query: 110 FNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG 169
+N +F VDH LR ES +EA +V + +GI C+++ W +P +
Sbjct: 65 --KNKIKVKFF------LVDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR- 113
Query: 170 HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229
++Q AR+ RY L K C ++ I LL+ HH++D E F++R+ R SG+ GL
Sbjct: 114 NIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGLVSFN---- 169
Query: 230 IFSSYAYSCHD--------DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
S Y D +LK + ++ I + + +++DP+N + ++ R RIR L L
Sbjct: 170 --KSVKYKDEDLNILRPLLNLKKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLESL 227
Query: 282 SSCSFK-SELQAVISACRRTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDI 339
+L+ I R + ++ +V NL + + + + ++ + S E +
Sbjct: 228 EKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSH-EVV 286
Query: 340 FLSKFLALVLQFICQRQRPVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 387
F S L V+Q I ++ PVRG + L++ I +TF + +T GC++
Sbjct: 287 FRS--LTFVIQKIGKKYYPVRGKSINELINRIILKTF---SKITLGGCFV 331
>gi|452963075|gb|EME68161.1| ATPase [Magnetospirillum sp. SO-1]
Length = 452
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 163/344 (47%), Gaps = 25/344 (7%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR M G + R+ + VSGG DS+AL +L A W G A +LA+TV
Sbjct: 20 FSRLMMPFGPFEAAPRLGVAVSGGADSLALTLLAAQWA----KARGGA------VLALTV 69
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH LR +S EA V ++ GI ++ +W DG LQ AAR RYRL + C
Sbjct: 70 DHRLRPDSAAEAARVGAWLAGEGIVHRVL--EW-DGAKPDSDLQAAARAARYRLLGEACA 126
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I LL+AHH DDQAE +LRL R SG+ GLA MA + ++
Sbjct: 127 AEGILHLLLAHHRDDQAETLLLRLGRGSGLEGLAAMAAERPTAWGRLLRPLLPVPRQTLE 186
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHV 307
+ +DW++DP+NR+ +F R R+R G L++ +E L A R ++ V+ +
Sbjct: 187 ATLRRRGQDWIDDPSNRNGVFARVRLRRLAGGLAAEGLTAERLAATAGRLARAQAAVDAM 246
Query: 308 CSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 367
+ V++ GYA + +L + E++ L L+L + P +
Sbjct: 247 VAEAAARHVSLYPAGYARLRPAVLA-ALPEEVGLRLLARLLLAVGGEAYTPRLERLER-- 303
Query: 368 LHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC---SSIDGPL 408
LH T +T+ T AGC + P G + +VC + ++ PL
Sbjct: 304 LHAALTAGLETARTLAGCRVVPL----GGEVVVCREPARVEAPL 343
>gi|338972038|ref|ZP_08627417.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234932|gb|EGP10043.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C]
Length = 357
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+G K I L VSGGPDS+AL L A W+ Q L+A+TVDHGLR+E+
Sbjct: 27 SGWKASPAIVLAVSGGPDSVALMWLAARWRKT-LKQGPR-------LVAVTVDHGLRKEA 78
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V H + + I ++ W +PK G L AARD RYRL + +L
Sbjct: 79 AREARDVKHLAAALDIEHRTMK--WRGDKPKTG-LPSAARDARYRLLARAAKSCGASHIL 135
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AH DDQAE I+RLSR SG+ GLA MA + D+ ++ +
Sbjct: 136 TAHTQDDQAETVIMRLSRGSGIAGLAAMARQTDRGDVVLVRPFLDVPKARLVATLEKAGI 195
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ +DPTN P F R R+R + L++
Sbjct: 196 AFADDPTNHDPRFTRPRLRALMPALAA 222
>gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
hamburgensis X14]
gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
hamburgensis X14]
Length = 345
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 100/203 (49%), Gaps = 11/203 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
++ A K H + LGVSGGPDS AL L A W+ A L+A+TVDHGL
Sbjct: 15 KLLFADWKAAHALVLGVSGGPDSTALMWLAARWR--------RAMTRGPDLIAVTVDHGL 66
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S EA V H + +G+R VR W +PK G L AARD RYRL K +
Sbjct: 67 RPGSAREARDVKHLATSLGMRHRTVR--WSGAKPKSG-LPAAARDARYRLLAKTARANGA 123
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+ AH DDQAE ++R+SR SG+ GL+ MA + + ++ +
Sbjct: 124 LHVFTAHTRDDQAETVLMRISRGSGITGLSAMARETMRDGFILARPLLHVSKSRLIATLE 183
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
+ EDPTNR F R R+R
Sbjct: 184 KAGIAYAEDPTNRDVSFTRPRLR 206
>gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
gi|189035964|sp|A5ERG8.1|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
Length = 358
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKT---GGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ L VSGGPDSMAL L A W+ GG LLA+TVDHGLR ES+ EA
Sbjct: 30 LTLAVSGGPDSMALMWLAARWRATRAGGPR-----------LLAVTVDHGLRPESRREAL 78
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V +G+ +R W +P G + EAAR RYRL + Q ++ AH
Sbjct: 79 MVKQLARQLGLTHRTLR--WSGEKPAAG-IPEAARIARYRLLARAAEQAGASHVVTAHTR 135
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE ++RL R SG+ GLA MA S+ L +L + + +D
Sbjct: 136 DDQAETVLMRLLRGSGIAGLAAMAPVSRRDGLLLARPLLSLSKARLLATLRSAGIAFADD 195
Query: 262 PTNRSPLFVRNRIRMSLGDLSS 283
PTNR P F R R+R + L++
Sbjct: 196 PTNRDPAFTRPRLRALMPTLAA 217
>gi|372280289|ref|ZP_09516325.1| tRNA(Ile)-lysidine synthetase [Oceanicola sp. S124]
Length = 422
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 137/315 (43%), Gaps = 26/315 (8%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG----LLAITVDHGLREES 136
P I L VSGG DS+AL L A E + G L A+TVDHGLR E+
Sbjct: 20 PAEEIGLAVSGGGDSLALLYLMA--------------EIVQGSDLTLRAVTVDHGLRPEA 65
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +V + +G+ E++R + G +G+LQ+ AR RY L H I +
Sbjct: 66 AEEAAMVGRHAATLGVPHEVLRWE---GWQGEGNLQDQARRARYDLLGAWARGHGIRQVA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ H ADDQAE F++RLSR SGV GL+GMA +I + + + G
Sbjct: 123 LGHTADDQAETFLMRLSRASGVDGLSGMAVRRRIGPVTFVRPLLEARRSCLRAYLTGRGA 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
W++DP+N F R+R + QA+ R S + +EA
Sbjct: 183 SWIDDPSNEDTRF--ERVRARQALAALAPLGVTTQAIADTARNLASVRSTLGWYAFSEAQ 240
Query: 317 TVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPC 376
++ + L ++ + L+ L ++ P R T L L +R+
Sbjct: 241 RLVSAEAGDLVLSRAGFRVLQPEIARRILSQALLWVSGSDYPPRRRTLALALEAVRS--- 297
Query: 377 KTSLTAAGCYLCPTP 391
T +T GC + TP
Sbjct: 298 GTGMTLHGCLVLVTP 312
>gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
Length = 346
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 169/350 (48%), Gaps = 44/350 (12%)
Query: 52 SHAHAVEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGG 109
+H + +L D ++K FS + L +A+ VSGGPDS+AL L +
Sbjct: 7 THKQILSFLKDRKISKVYSEFS-----SSLNSEENLAVAVSGGPDSLALAYLAKCYSI-- 59
Query: 110 FNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG 169
+N +F VDH LR ES +EA +V + +GI C+++ W +P +
Sbjct: 60 --KNKIKVKFF------LVDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR- 108
Query: 170 HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229
++Q AR+ RY L K C ++ I LL+ HH++D E F++R+ R SG+ GL
Sbjct: 109 NIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGLVSFN---- 164
Query: 230 IFSSYAYSCHD--------DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 281
S Y D +L+ + ++ I + + +++DP+N + ++ R RIR L L
Sbjct: 165 --KSVKYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLEFL 222
Query: 282 SSCSFK-SELQAVISACRRTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDI 339
+ +L+ I R + ++ +V NL + + + + ++ + S E +
Sbjct: 223 AKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSH-EVV 281
Query: 340 FLSKFLALVLQFICQRQRPVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 387
F S L V+Q I ++ PVRG + L++ I +TF + +T GC++
Sbjct: 282 FRS--LTFVIQKIGKKYYPVRGKSINELINRIILKTF---SKITLGGCFV 326
>gi|414168769|ref|ZP_11424732.1| tRNA(Ile)-lysidine synthetase [Afipia clevelandensis ATCC 49720]
gi|410887505|gb|EKS35315.1| tRNA(Ile)-lysidine synthetase [Afipia clevelandensis ATCC 49720]
Length = 349
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+G K I L VSGGPDS+AL L A W+ Q L+A+TVDHGLR+E+
Sbjct: 19 SGWKASPAIVLAVSGGPDSVALMWLAARWRKT-LKQGPR-------LVAVTVDHGLRKEA 70
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V H + + I ++ W +PK G L AARD RYRL + +L
Sbjct: 71 AREARDVKHLAAALDIEHRTMK--WRGDKPKTG-LPSAARDARYRLLVRAAKSCGASHIL 127
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AH DDQAE I+RLSR SG+ GLA MA + D+ ++ +
Sbjct: 128 TAHTQDDQAETVIMRLSRGSGIAGLAAMARQTDRGDVVLARPFLDVPKARLVATLEKAGI 187
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ +DPTN P F R R+R + L++
Sbjct: 188 AFADDPTNHDPRFTRPRLRALMPALAA 214
>gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
Length = 347
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 105/211 (49%), Gaps = 11/211 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ +NG LLA+TVDHGL
Sbjct: 17 RHLFAGWKRIPALVLAVSGGPDSVALLWLAARWRKS--LKNGP------DLLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI I+ W +PK G + AARD RY L +
Sbjct: 69 RAAAAHEARNVKRLASSLGITHRIL--SWRGPKPKTG-VPRAARDARYELLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
++ AH DDQAE ++RLSR SG+ GLAGMA ++ ++ ++
Sbjct: 126 VAIVTAHTQDDQAETVLMRLSRGSGITGLAGMAMQTERHGVGLLRPFLEIPKARLVATLD 185
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ +DPTN P + R+R+R + L+S
Sbjct: 186 RAKVVYADDPTNHDPAYTRSRLRALMPVLAS 216
>gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
Length = 447
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 146/330 (44%), Gaps = 15/330 (4%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
M + P+ + A+ VSGG DSM L L A + ++ + +TV+HG R E
Sbjct: 1 MRDIVPNAQYAVAVSGGVDSMTLMRLVALFH--------KSSASVGSPTILTVNHGFRPE 52
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
++ E + V + + +G+ C ++ W + P + Q AR++RY+L + C H + VL
Sbjct: 53 ARNEVSFVHKQATMLGLECHMLH--WEN--PIRKKSQVVARNIRYQLLLQWCSAHNVKVL 108
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
L AH +DQAE ++RL R SG+ GLAG+ S I D I
Sbjct: 109 LTAHTKNDQAETVLIRLERGSGIDGLAGIRERSVIGDVTIIRPLLDFTRREIQEYAIQHQ 168
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCS-FKSELQAVISACRRTRSYVEHVCSNLINE 314
+ W+EDP+N P + R R + + S L + +R+ S + H N ++
Sbjct: 169 QPWIEDPSNSDPKYRRTFYRNFINNCKHPEILISRLSSTALHMQRSLSCILHYVQNALDS 228
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
+ GY VI ++ ++D S+ L++ I + R S L +R+
Sbjct: 229 CLEFTPFGYVVIKHDVFR--NLQDEIASRLFLLLIMTIGNKPLKPRFSKFSSALSKVRST 286
Query: 375 PCKTSLTAAGCYLCPTPGSRGTKALVCSSI 404
S T GC + T S A SSI
Sbjct: 287 AGFASFTLHGCMILKTCDSNIIVAREVSSI 316
>gi|374291392|ref|YP_005038427.1| tRNA(Ile)-lysidine synthase [Azospirillum lipoferum 4B]
gi|357423331|emb|CBS86181.1| tRNA(Ile)-lysidine synthase [Azospirillum lipoferum 4B]
Length = 453
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 135/265 (50%), Gaps = 25/265 (9%)
Query: 70 FSRRMA-MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+R MA + G +P +A+G+SGG DS+AL +L W E LLA+TV
Sbjct: 19 FARAMAALDGFEPAPAVAVGLSGGGDSLALVLLLRHWVA----------ERGGNLLALTV 68
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES +EA +V ++ +GI I+R W +P G A R+RL C+
Sbjct: 69 DHGLRAESADEAAVVGTAMARIGIPHRILR--WAGDKPVSGLQAAARA-ARHRLLADACV 125
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAF-----SSQIFSSYAYSCHDDLK 243
+ I L +AHH DDQAE +LRL+R SG GLAGMA + ++ HD L
Sbjct: 126 EAGILHLALAHHRDDQAETVLLRLARGSGTDGLAGMAAVRADGAVRVIRPLLGFSHDRL- 184
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRS 302
L C+ +WVEDP+N +P F R R+R + L + L V R R+
Sbjct: 185 ----LATCRAAGLEWVEDPSNHNPRFARARLRAARDLLGGEGLDGDRLCEVARRAGRARA 240
Query: 303 YVEHVCSNLINEAVTVMDQGYAVID 327
+E ++L+ +A T+ +G+ D
Sbjct: 241 ALEQATADLLAQAATIHPEGWVTFD 265
>gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
Length = 412
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 152/339 (44%), Gaps = 58/339 (17%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A +TG + A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA--ETGIATR------------AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIADW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYS 237
+ + + H DD AE F++RL+R +GV GLA GM + +
Sbjct: 104 ARAAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVRRAEGMVWLRPLLGIGREE 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
DL+ W+EDP+N +P F R R+R ++ L+ + E A ++
Sbjct: 164 LRADLRRRGA---------SWIEDPSNDNPAFERVRVRQAMESLADLGLRPERLADVA-- 212
Query: 298 RRTRSYVEHVCSNL---INEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQ 350
S++ V L + EA + +D+G V+ L P +I L + L LQ
Sbjct: 213 ----SHLAEVRDALDLQLREAAGRLAQVDRGDVVLASAALELPPEI----LRRLLRAALQ 264
Query: 351 FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 389
++ + RG L IR T++T GC L P
Sbjct: 265 WVASAEYGPRGPA---LGQAIRRLSEGTTVTLHGCRLAP 300
>gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1]
gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1]
Length = 412
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 149/336 (44%), Gaps = 52/336 (15%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V +D+G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVGRVCADLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYS 237
+ + + H DD AE F++RL+R +GV GLA GM + +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVRRAEGMVWLRPLLGIGREE 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
DL+ W+EDP+N +P F R R+R ++ L+ + E A ++
Sbjct: 164 LRADLRRRGA---------SWIEDPSNDNPAFDRVRMRQAMESLADLGLRPERLADVAG- 213
Query: 298 RRTRSYVEHVCSNLINEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFIC 353
+ V + EA + +D+G V+ +L P +I L + L LQ++
Sbjct: 214 --HLAEVRDALDLQLREAAGRLARVDRGDVVLAPPVLELPPEI----LRRLLQAALQWVA 267
Query: 354 QRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 389
+ RG L +R T++T GC L P
Sbjct: 268 SAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278]
gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278]
Length = 367
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGGPDSMAL L A W+ DG L+AITVDHGLR E++ EA +
Sbjct: 36 LVLAVSGGPDSMALLWLAARWRQA----------LADGPRLVAITVDHGLRPEARREAAM 85
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + + ++R W + +P G + EAAR RYRL + Q +L AH D
Sbjct: 86 VKRFARQLEVSHRMLR--WTEPKPTTG-IPEAARLARYRLLARAARQAGASHVLTAHTRD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE ++RL R SG++GLA MA S ++ ++ + ++ +DP
Sbjct: 143 DQAETVLMRLLRGSGIVGLAAMAPVSARDGLLLARPLLEISKARLVATLRSAGIEFADDP 202
Query: 263 TNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
TN P + R R+R + L++ S A ++
Sbjct: 203 TNHDPAYTRPRLRALMPALAAEGGDSRTLATLA 235
>gi|353328137|ref|ZP_08970464.1| tRNA(Ile)-lysidine synthase, partial [Wolbachia endosymbiont wVitB
of Nasonia vitripennis]
Length = 400
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 13/278 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 68 FVISYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SGV GL+ M + S + Y + + I W+ED
Sbjct: 126 DDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYANLHRLKWIED 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N + R R L + +E + + +R + H +N+ V + D
Sbjct: 186 RSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLALNDCVNIHD 245
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRP 358
GY I L+ L E+I L L ++ + + +P
Sbjct: 246 LGYIEIKLDELYKLP-EEIALRLLLYSIMAIVNKHYKP 282
>gi|430812072|emb|CCJ30471.1| unnamed protein product [Pneumocystis jirovecii]
Length = 229
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 95/189 (50%), Gaps = 23/189 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ VSGG DSMA+CVL F + + TVDH LRE+S+EEA V
Sbjct: 4 LGAAVSGGCDSMAICVLFQ--------------HFREKMCVFTVDHELREKSREEAEAVH 49
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
VS MG + +I+ W + ++ AAR+ RY L + C++ I VL + HH+DDQ
Sbjct: 50 RIVSGMGFQHKILSMKWPKEKIPIKSIENAAREQRYTLLTRACLESDIRVLFLGHHSDDQ 109
Query: 205 AELFILRLSRNSGVLGLAGM---AFSSQI----FSSYAYSCHDDLKNHSILL--ICQGGN 255
AE +R SG GLAGM A + I ++ + C L I+L IC+ N
Sbjct: 110 AETVFMRFIEKSGPDGLAGMQKLALNPMIGKIMYAENVFLCRPFLDIPKIVLKNICRSNN 169
Query: 256 RDWVEDPTN 264
W EDPTN
Sbjct: 170 IQWFEDPTN 178
>gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Stappia aggregata IAM 12614]
gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Stappia aggregata IAM 12614]
Length = 461
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 120/252 (47%), Gaps = 26/252 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+AL VSGG DS+ L VL W K G+ E + VDH LR ES +EA V
Sbjct: 36 LALAVSGGSDSLCLLVLFDEWRKRTGWQGAAEV---------LCVDHQLRPESGQEAEFV 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ G+ C ++R W +P ++QE AR RYRL + L++ HH DD
Sbjct: 87 AMNARACGLDCTVLR--WSGDKPS-ANVQEEARLARYRLMAGRMRDTEAEALVLGHHLDD 143
Query: 204 QAELFILRLSRNSGVLGLAGMAFSS-------QIFSSYAYSCHDDLKNHSILLICQGGNR 256
QAE F+ RL+R SGV GL+GMA ++ DL I + Q G R
Sbjct: 144 QAETFLDRLTRGSGVSGLSGMAADEGCGPEGLRLLRPLLSVSKSDL----IAALEQRG-R 198
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEA 315
W DP+NR+P + R+R+R+ L L+ +E A +A RR R +E +L
Sbjct: 199 PWCTDPSNRNPKYKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTVEDLAARL 258
Query: 316 VTVMDQGYAVID 327
VT G +D
Sbjct: 259 VTEHPAGPVRLD 270
>gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
Length = 423
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DSMAL L G Q L A+TVDHGLR E+ EA V
Sbjct: 27 RLGVAVSGGGDSMALLSLLHGLCAAAGTQ----------LEAVTVDHGLRPEAATEAAFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+H +G+ E ++ DG QG+LQ AAR+ RYRL + + + + H ADD
Sbjct: 77 AHHAGALGLPHETLQWRGWDG---QGNLQNAAREARYRLMADWAARRDLPCIALGHTADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQ-----IFSSYAYSCHDDLKNHSILLICQGGNRDW 258
QAE ++RL+R SGV GL+ MA S+ ++ + L+++ + +W
Sbjct: 134 QAETVLMRLARRSGVDGLSAMAPQSRRHGVTWLRPLLFARRESLRDY-----LRRAGLEW 188
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
V+DP+N P + R + R SL L E A +++
Sbjct: 189 VDDPSNDDPRYARIQTRQSLAALDPLGIDVETLAEVAS 226
>gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
Length = 412
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 146/334 (43%), Gaps = 48/334 (14%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYS 237
+ + + H DD AE F++RL+R +GV GLA GM + +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVRRAEGMVWLRPLLGIGREE 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISA 296
DL+ W+EDP+N +P F R R+R ++ L+ + E L V
Sbjct: 164 LRADLRRRGA---------SWIEDPSNDNPAFDRVRMRQAMESLADLGLRPERLADVAGH 214
Query: 297 CRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFICQR 355
R ++ S V D+G V+ +L P +I L + L LQ++
Sbjct: 215 LAEVRDALDLQLSEAAGRLARV-DRGDVVLAPPVLELPPEI----LRRLLQAALQWVASA 269
Query: 356 QRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 389
+ RG L +R T++T GC L P
Sbjct: 270 EYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|389693717|ref|ZP_10181811.1| tRNA(Ile)-lysidine synthetase [Microvirga sp. WSM3557]
gi|388587103|gb|EIM27396.1| tRNA(Ile)-lysidine synthetase [Microvirga sp. WSM3557]
Length = 341
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I VSGGPDS+AL L A W+ G +L +TVDHGLR E+ +EA V+
Sbjct: 29 IIAAVSGGPDSIALMHLLARWRVAGSRPP---------ILVVTVDHGLRPEAADEAAFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+R I+ W +P+ G +QEAAR+ RYRL + L+ AH DDQ
Sbjct: 80 READALGLRHRIL--AWAGDKPRTG-IQEAAREARYRLLADLAHAAGASHLVTAHTLDDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RL+R SG+ GLAGM ++ +L +C+ +VEDP+N
Sbjct: 137 AETIMMRLARGSGLAGLAGMRRETERRGIVHARPLLGWPKARLLDLCRSQGWRFVEDPSN 196
Query: 265 RSPLFVRNRIRMSLGDLSSCSFKSE 289
+ L+ R R R + L++ +E
Sbjct: 197 ANTLYARVRWRRLMPLLAAEGLDAE 221
>gi|114771183|ref|ZP_01448603.1| PP-loop family protein [Rhodobacterales bacterium HTCC2255]
gi|114548108|gb|EAU50995.1| PP-loop family protein [Rhodobacterales bacterium HTCC2255]
Length = 423
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 162/365 (44%), Gaps = 51/365 (13%)
Query: 58 EYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAG 117
+ L + T+ AF +++ I L VSGG DS+AL LT W A
Sbjct: 8 DILNNFTEKMNAFEIQIS------GDNIGLSVSGGGDSIALLYLTKEW----------AC 51
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
+ + TVDHGLR+ES EA V +GI C I+ +W D K G+LQ+AAR
Sbjct: 52 KNDKKIFVATVDHGLRKESLNEAQTVKDICRSLGIECTIL--NWTDW-DKSGNLQDAARS 108
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
R RL + + H ADDQAE F+LRL+R SGV GL+GMA S I
Sbjct: 109 ARNRLIGNWANSLGLDAVATGHTADDQAETFLLRLARGSGVDGLSGMA--SSILKEGMLW 166
Query: 238 CHDDLKNH-SILLICQGGNR-DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
L+ H S L N+ W +DP+N + F R ++R + SF + + IS
Sbjct: 167 FRPLLEFHRSELRDYLNINKITWFDDPSNENMKFDRVKMR------KAQSFLNNMGLTIS 220
Query: 296 ACRRT-------RSYVEHVCSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKFLA 346
T R+ +E V I + G ++DLE L P ++++ S L
Sbjct: 221 CLNETAQRMSVARNALELVSKEKIENITEITKMGTVMLDLEEFKLLPVEVQNRIYSHILK 280
Query: 347 LVLQFICQ-RQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSID 405
+ I + R + S KLL CKT T +GC++ S G A +C +
Sbjct: 281 WISGSIYRPRFISLTESIKKLL-------NCKTH-TISGCHVT----SNGRSAEICREVS 328
Query: 406 GPLPS 410
+ S
Sbjct: 329 KIIKS 333
>gi|365887904|ref|ZP_09426717.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. STM 3809]
gi|365336505|emb|CCD99248.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. STM 3809]
Length = 362
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGGPDSMAL L A W+ G +G L+A+TVDHGLR E++ EA +
Sbjct: 36 LVLAVSGGPDSMALLWLAARWR----------GALREGPRLVAVTVDHGLRPEARREAQM 85
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + + +R W D +P G + EAAR RYRL + Q +L AH D
Sbjct: 86 VKQAARQLDVTHRALR--WSDPKPATG-IPEAARLARYRLLGRAARQAGASHVLTAHTRD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE ++RL R SG++GL MA S + ++ + + +DP
Sbjct: 143 DQAETVLMRLLRGSGIVGLTAMAPVSARGELLLARPLLHVSKARLIATLRSAAIGFADDP 202
Query: 263 TNRSPLFVRNRIR 275
TNR P + R R+R
Sbjct: 203 TNRDPAYTRPRLR 215
>gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
Length = 412
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 149/336 (44%), Gaps = 52/336 (15%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYS 237
+ + + H DD AE F++RL+R +GV GLA GM + +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVRRAEGMVWLRPLLGIGREE 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
DL+ W+EDP+N +P F R R+R ++ L+ + E A ++
Sbjct: 164 LRADLRRRGA---------SWIEDPSNDNPAFDRVRVRQAMESLADLGLRPERLADVAG- 213
Query: 298 RRTRSYVEHVCSNLINEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFIC 353
+ V + EA + +D+G V+ +L P +I L + L LQ++
Sbjct: 214 --HLAEVRDALDLQLREAAGRLARVDRGDVVLAPPVLELPPEI----LRRLLRAALQWVA 267
Query: 354 QRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 389
+ RG L +R T++T GC L P
Sbjct: 268 SAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|429206216|ref|ZP_19197484.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. AKP1]
gi|428190937|gb|EKX59481.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. AKP1]
Length = 412
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 151/339 (44%), Gaps = 58/339 (17%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIADW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYS 237
+ + + H DD AE F++RL+R +GV GLA GM + +
Sbjct: 104 ARAAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVRRAEGMVWLRPLLGIGREE 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
DL+ W+EDP+N +P F R R+R ++ L+ + E A ++
Sbjct: 164 LRADLRRRGA---------SWIEDPSNDNPAFERVRVRQAMESLADLGLRPERLADVA-- 212
Query: 298 RRTRSYVEHVCSNL---INEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQ 350
S++ V L + EA + +D+G V+ L P +I L + L LQ
Sbjct: 213 ----SHLAEVRDALDLQLREAAGRLAQVDRGDVVLASAALELPPEI----LRRLLRAALQ 264
Query: 351 FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 389
++ + RG L +R T++T GC L P
Sbjct: 265 WVASAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
Length = 459
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 16/296 (5%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
LK +IAL VSGG DS+ L + W++ +N E + + VDH LR ES +
Sbjct: 30 LKNFSKIALAVSGGGDSVCLLLAFCEWRS---RRNWEGACEV-----VVVDHQLRPESSQ 81
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA V G+RC I++ W D +P+ G +QEAAR RY+L K +L+A
Sbjct: 82 EACFVRELSEQHGLRCHILK--WTDDKPETG-VQEAARGARYQLIAKQTAVSGFEAVLLA 138
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD- 257
HH DDQAE F+ RL+R SG+ GL MA + L L+ RD
Sbjct: 139 HHLDDQAETFLDRLTRGSGLNGLGAMASDEPEGPAGLRLLRPFLGVPKSRLLATLEERDQ 198
Query: 258 -WVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRSYVEHVCSNLINEA 315
W +DP+N+S + R+R+R LS S + RR R +E V + L +
Sbjct: 199 KWCDDPSNKSLKYKRSRLRSISSTLSEEGLSPSRIATTARQLRRAREALEMVLAELFRQH 258
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
V G + E F + L L+++ + R + + L H+I
Sbjct: 259 VEEHPAGPVKTSTLVFRAQSEE--FRLRLLILMIERVTGRVYQPKLRKIEALDHWI 312
>gi|381165856|ref|ZP_09875083.1| tRNA(Ile)-lysidine synthase [Phaeospirillum molischianum DSM 120]
gi|380685346|emb|CCG39895.1| tRNA(Ile)-lysidine synthase [Phaeospirillum molischianum DSM 120]
Length = 466
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 150/322 (46%), Gaps = 29/322 (9%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+ + +P R+A+ VSGG DS+AL +L W + G A + +TVDH LR
Sbjct: 16 LPLGPFEPRPRLAVAVSGGADSLALTLLADKWAR---MRGGHA-------VGLTVDHRLR 65
Query: 134 EESKEEANIVSHRVSDMGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
++ EAN V ++ GI +VR +G +Q AR R+ L + C + I
Sbjct: 66 PDAAAEANRVGQWLAVHGIDHVILVR----EGERPTADIQAVARKARHDLLGRYCAEAGI 121
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHDDLKNHSI 247
LL+AHH +DQAE +LRL R SGV GLA MA QI + L++
Sbjct: 122 LHLLLAHHREDQAETLLLRLGRGSGVDGLAAMATRRPTRWGQILRPLLDTPRARLRS--- 178
Query: 248 LLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS-CSFKSELQAVISACRRTRSYVEH 306
L+ +G +DWVEDP+N P++ R R R L++ + L A + R R+ +EH
Sbjct: 179 TLVERG--QDWVEDPSNADPVYARVRFRQLAPVLAAEGLASARLAATAARLGRVRATLEH 236
Query: 307 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 366
+ + G+A + + + E+I L + LA +L + P R +
Sbjct: 237 DVARAAARLIVPHPAGFARLAANGFS-ALSEEIAL-RVLARLLSLVGGEPLPPRHERLER 294
Query: 367 LLHYIRTFPCKTSLTAAGCYLC 388
L H + T LT AGC +
Sbjct: 295 LAHALAAG-SMTGLTLAGCRIV 315
>gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
Length = 332
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 13/200 (6%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+A L PH + L VSGGPDS+AL +L A W + + TVDHGLR E
Sbjct: 10 LALLAPHRSLLLAVSGGPDSVALMLLAAQWPDRRSHD----------IAVATVDHGLRPE 59
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
++ EA V + +G ++ W +P+ +QE AR RY L + G +
Sbjct: 60 ARREAEQVGAWANALGFPHHVL--TWQGEKPRT-RVQERARTARYALLADCAGRIGAGAI 116
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+ AHHADDQAE + RL+R SGV GLAGM S+ L+ ++ IC+ +
Sbjct: 117 VTAHHADDQAETILFRLTRGSGVAGLAGMTAESRCGGVALLRPLLGLRKAALEEICRRCD 176
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
D+ DP+N + R R+R
Sbjct: 177 HDYFRDPSNIDEHYARARLR 196
>gi|402702819|ref|ZP_10850798.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia helvetica C9P9]
Length = 430
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ LK+ + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNILKSELVEYLV-NHNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS----NLINEAVTVM 319
N S + RN IR L K+ A+IS +T +E+ + I EAV +
Sbjct: 187 NLSDKYKRNLIRQKLAK-EEDYIKA---AIISQQLKTNKLIENEFKPELISAIVEAVKIF 242
Query: 320 DQGYAVIDL 328
+ G+A +DL
Sbjct: 243 EYGFAFLDL 251
>gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM]
gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM]
Length = 396
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 140/309 (45%), Gaps = 26/309 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS AL + W G L A+TVDHGLR + EA V+
Sbjct: 1 MAVAVSGGSDSTALLLGLKDWAQGREVS----------LYAVTVDHGLRAAAAHEAEAVA 50
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++ + + DG QG+L +AAR RY L + H I L++ H +DQ
Sbjct: 51 QLCAELALPHHCLEWQGWDG---QGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQ 107
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLICQGGNRDWVED 261
AE ++RL+R +G+ GLAGM + + A + H L S+ + + W +D
Sbjct: 108 AETLVMRLARGAGLDGLAGMGART---ARGAMTLHRPLLGVSRESLRAYLRRRDIGWADD 164
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
P+N P + R R R +L L S + E L V R R+ + HV E + D
Sbjct: 165 PSNEDPQYARVRTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQE-AAERLVQFD 223
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSL 380
G VID + + + + L L+++ P RG+ + LL ++ + ++
Sbjct: 224 AGDLVIDAQAWGEERRD--IQRRILQAALRWVSGHGYPARGAAVEALLEALQR---EEAM 278
Query: 381 TAAGCYLCP 389
T GC P
Sbjct: 279 TLHGCRNIP 287
>gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
Length = 446
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 114/249 (45%), Gaps = 28/249 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P+ I LGVSGG DS+AL L WK + + L +TVDHGLR ES +
Sbjct: 31 LSPYKSITLGVSGGADSLALLFLVVEWK--------KRQSWSGALDVVTVDHGLRAESAK 82
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA VS + +R I L+ RP+ +LQ AR+ RY L + + L+
Sbjct: 83 EARFVSDICRSLQVRHTI-----LEWRPEGALSNLQGRAREARYALIAEHMEESSSEALV 137
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSS-------QIFSSYAYSCHDDLKNHSILL 249
+ HH DDQAE F+ RL+R SGV GL+ MA QI D L +L
Sbjct: 138 LGHHLDDQAETFLDRLTRGSGVYGLSAMASVEHQGPNGLQIVRPLLSLSKDQL-----VL 192
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVC 308
+ + WVED +N + R R+R L LS + L RR R +E
Sbjct: 193 SLEARGQSWVEDQSNEVEAYKRVRLRKLLKGLSDEGLSRDGLAETAKRMRRAREALEEWV 252
Query: 309 SNLINEAVT 317
S+ + VT
Sbjct: 253 SSFWSTRVT 261
>gi|426401005|ref|YP_007019977.1| tRNA(Ile)-lysidine synthetase [Candidatus Endolissoclinum patella
L2]
gi|425857673|gb|AFX98709.1| tRNA(Ile)-lysidine synthetase [Candidatus Endolissoclinum patella
L2]
Length = 457
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 131/310 (42%), Gaps = 16/310 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL T W A + LL +TVDH LR+ES EA V+
Sbjct: 35 VVLAVSGGPDSMALLYFTDLW----------ARQRKRELLVLTVDHSLRQESANEAAEVA 84
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
RV MG +++ W +P G +Q AARD+R+ L + C + +L AHH DDQ
Sbjct: 85 RRVIAMGHTHQVL--TWHGTKPATG-IQAAARDIRFTLLSEACYRAGALTMLFAHHRDDQ 141
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE + R++ N+G GLA M+ + + +L C + D++ DP+N
Sbjct: 142 AETLLHRINGNTGPEGLASMSLVTSRNGLRLARPFLSVPKDRLLATCTAASLDYINDPSN 201
Query: 265 RSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAVTVMDQGY 323
F R ++R LS + L + SA R + + + + V G
Sbjct: 202 EDLRFARAKLRHLKPALSEIGLTVDRLTRLSSAMGIARCAMRKIVGSWLARYAVVYACGT 261
Query: 324 AVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAA 383
+DL L D F + L V + P L+ +I T
Sbjct: 262 CRLDLFSLQAGP--DYFTAVVLRCVFNIVGGFGHPPSSEAMTRLIEWITGKSAVWRRTLR 319
Query: 384 GCYLCPTPGS 393
GC L GS
Sbjct: 320 GCLLQIDNGS 329
>gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
gi|166988064|sp|A8GY99.1|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
Length = 430
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 165/373 (44%), Gaps = 48/373 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L ++VDH LR++SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAKKN---NIE-------LFVLSVDHNLRDQSKQEIEYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +D+G++ + + D + +LQE AR RY L +C + I VLL AHH DD
Sbjct: 71 QNTANDLGLKFYSL---FFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL R SGV GL+ + ++QI +L N+ N W
Sbjct: 128 YIENFCLRLERKSGVFGLSSSSVNWHNNTQIIRPLFNIPKSELVNY-----LATNNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEHVCSNLINEAV 316
ED +N S + RN IR L K ++ Q ++ + E + + I E+V
Sbjct: 183 EDQSNLSTKYRRNTIRQKLAK-EEVYIKDDIITQQIKVNELIENKFKPELISA--IAESV 239
Query: 317 TVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIR-TFP 375
+ + G+A +DL + S + + +L I +QR R + + +L IR +
Sbjct: 240 KISEYGFAFLDL--IKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLD 297
Query: 376 CKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP-SKLEL---------FQIHSDGEQRH 425
K +L GC + K L+ LP SKL L F+I + + +
Sbjct: 298 FKNTL--HGCVIKRMQN----KLLIYREFGKKLPESKLLLDKQLVWDNRFRITKNHDIEN 351
Query: 426 CVTDVEQILEDAK 438
CV LED K
Sbjct: 352 CVATYLS-LEDYK 363
>gi|407775307|ref|ZP_11122602.1| ATPase [Thalassospira profundimaris WP0211]
gi|407281732|gb|EKF07293.1| ATPase [Thalassospira profundimaris WP0211]
Length = 495
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 126/260 (48%), Gaps = 23/260 (8%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
MA A + I +GVSGG DSMAL +L W Q G L+A+TVDHGLR
Sbjct: 41 MAFAPFETAPEILVGVSGGADSMALALLAHDWCQA---QGGR-------LVAVTVDHGLR 90
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +EA V+ ++ I E + W +PK G +QE AR RY++F + I
Sbjct: 91 KAASDEARWVAAELARHNI--EHITKHWQGEKPK-GAVQEKARQARYQIFDDLMRDTGIF 147
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQG 253
LL+AHHA DQ E +R R + +G AGM S++ + Y L L+
Sbjct: 148 HLLVAHHAGDQRETIAMRRDRGTTPIGQAGM--SARRYLRYGRVLRPLLGVAKTDLVATL 205
Query: 254 GNRD--WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
R W+EDP+N F R R+R + + S ++ A SA R +E L
Sbjct: 206 TARGQAWIEDPSNIDDKFERVRVRRAFA--AGASHPPDINADASA----RRDIETGIGRL 259
Query: 312 INEAVTVMDQGYAVIDLEIL 331
+ AVT+ G A+++ ++L
Sbjct: 260 LAAAVTLHANGVAILNPDVL 279
>gi|383769450|ref|YP_005448513.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. S23321]
gi|381357571|dbj|BAL74401.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. S23321]
Length = 356
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 11/206 (5%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A LK + L VSGGPDS+AL L A W+ ++ + L +TVDHGLR E+
Sbjct: 19 AELKSSPALVLAVSGGPDSVALMWLAARWRRS-LSRGPQ-------LTVVTVDHGLRPEA 70
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V +++G+ +R W +PK+G L AAR+ RYRL + + +L
Sbjct: 71 AREAREVKQLATELGLTHRTLR--WRGVKPKRG-LPAAAREARYRLLAQAARKAGASHVL 127
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AH DDQAE ++RL R SG+ GL+ MA ++ D+ ++ +
Sbjct: 128 TAHTRDDQAETLLMRLVRGSGLAGLSAMARRTERDGIVLARPLLDVPKSQLVATLKRAKI 187
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLS 282
+ +DPTNR F R R+R L L+
Sbjct: 188 GFADDPTNRDTAFTRPRLRALLPQLA 213
>gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 422
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 14/305 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + A+TV+HGLR ES++EA+
Sbjct: 9 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPTALTVNHGLRPESQKEAD 59
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 60 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 117
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SGV GL+ M + S + Y + + I + WVED
Sbjct: 118 DDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWVED 177
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N + R R L + +E + + +R + H N+ V V D
Sbjct: 178 RSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHD 237
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSL 380
GY I L E+I L L ++ + +P R ++ ++ + I +
Sbjct: 238 LGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIVIFNKILQKDSNVNC 295
Query: 381 TAAGC 385
T +GC
Sbjct: 296 TLSGC 300
>gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
gi|122425129|sp|Q1RGN9.1|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
Length = 430
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 164/373 (43%), Gaps = 48/373 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L ++VDH LR++SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAKKN---NIE-------LFVLSVDHNLRDQSKQEIEYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +D+G++ + + D + +LQE AR RY L +C + I VLL AHH DD
Sbjct: 71 QNTANDLGLKFYSL---FFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL R SGV GL+ + ++QI +L N+ N W
Sbjct: 128 YIENFCLRLERKSGVFGLSSSSVNWHNNTQIIRPLFNIPKSELVNY-----LATNNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEHVCSNLINEAV 316
ED +N S + RN IR L K ++ Q ++ + E + + I E+V
Sbjct: 183 EDQSNLSTKYRRNTIRQKLAK-EEVYIKDDIITQQIKVNELIENKFKPELISA--IAESV 239
Query: 317 TVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIR-TFP 375
+ + G+A +DL + S + + +L I +QR R + + +L IR +
Sbjct: 240 KISEYGFAFLDL--IKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLD 297
Query: 376 CKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP-SKLEL---------FQIHSDGEQRH 425
K +L GC + K L+ LP SKL L F+I + +
Sbjct: 298 FKNTL--HGCVIKRMQN----KLLIYREFGKKLPESKLLLDKQLVWDNRFRITKNHNIEN 351
Query: 426 CVTDVEQILEDAK 438
CV LED K
Sbjct: 352 CVATYLS-LEDYK 363
>gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|254764824|sp|B3CLY6.1|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine
synthetase) (trna(ile)-2-lysyl-cytidine synthase)
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 430
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 14/305 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 68 FIISYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SGV GL+ M + S + Y + + I + W+ED
Sbjct: 126 DDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIERYAKLHQLRWIED 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N + R R L + +E + + +R + H ++ V V D
Sbjct: 186 RSNYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMHYTRLAFDDCVNVHD 245
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSL 380
GY I L E+I L L ++ + +P R ++ ++ + I +
Sbjct: 246 FGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIVIFNKILQKGSNVNC 303
Query: 381 TAAGC 385
T +GC
Sbjct: 304 TLSGC 308
>gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
gi|166988062|sp|A5CFP2.1|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
Length = 441
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 39/317 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEANI 142
++A+ VSGG DS+AL +L W E + G + +T+DH LR ES EA+
Sbjct: 22 KLAIAVSGGTDSLALMLLVKHW-----------NEKVKGEITVLTIDHHLRSESTSEADY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
VS + I+ + V W+ + G++Q AR RY L C +H I L+ HHAD
Sbjct: 71 VSSICQN--IKLQHVTLHWIH-KGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHAD 127
Query: 203 DQAELFILRLSRNSGVLGLAG----MAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
D E F +RL R +G+ GL+ + +I DLK + + N W
Sbjct: 128 DIVENFFIRLLRGAGLAGLSSHNIFFVNNVRIIRPLFNITKQDLKKY-----LEQQNIKW 182
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSEL---QAVISACRRTRSYVEHVCSNLI 312
+ DP+N S ++R ++R L + +F EL + ++S TR+ ++ V + +I
Sbjct: 183 INDPSNNSNKYLRTQVRDLLKSMLISFQNNFTVELLKKRIMLSQMHLTRA-LDSVNNEII 241
Query: 313 N---EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST-SKLLL 368
+ AV + G+AVID ++ + E + L+ +L + +P R S+ ++L
Sbjct: 242 HYVVYAVKIYSAGFAVIDRKLFRQASPEARY--AILSYLLMIVGANTKPQRFSSLQHIIL 299
Query: 369 HYIRTFPCKTSLTAAGC 385
H I+ + T T GC
Sbjct: 300 HDIQEY--NTYKTLHGC 314
>gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
gi|254764825|sp|C0R4S1.1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
Length = 431
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 140/305 (45%), Gaps = 14/305 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + A+TV+HGLR ES++EA+
Sbjct: 18 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPTALTVNHGLRPESQKEAD 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 69 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SGV GL+ M + S + Y + + I + W+ED
Sbjct: 127 DDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIED 186
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N + R R L + +E + + +R + H N+ V V D
Sbjct: 187 RSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHD 246
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSL 380
GY I L E+I L L ++ + +P R ++ ++ + I +
Sbjct: 247 LGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIVIFNKILQKDSNVNC 304
Query: 381 TAAGC 385
T +GC
Sbjct: 305 TLSGC 309
>gi|414163904|ref|ZP_11420151.1| tRNA(Ile)-lysidine synthetase [Afipia felis ATCC 53690]
gi|410881684|gb|EKS29524.1| tRNA(Ile)-lysidine synthetase [Afipia felis ATCC 53690]
Length = 347
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 103/211 (48%), Gaps = 11/211 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 17 RQLFAGWKRIPALVLAVSGGPDSVALLWLAARWRKS-LKKGPD-------LLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI ++ W +PK G + +AAR+ RY L +
Sbjct: 69 RAAASHEARDVKRLASALGIAHRTLK--WSGTKPKTG-VPQAAREARYTLLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
++ AH DDQAE ++RLSR SG+ GL GMA ++ D+ ++
Sbjct: 126 VAVVTAHTQDDQAETILMRLSRGSGITGLGGMAAQTERHGIGLLRPFLDIPKARLVATLD 185
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ DPTN P + R+R+R + L+S
Sbjct: 186 RARIGYASDPTNHDPAYTRSRLRTLMPVLAS 216
>gi|374333015|ref|YP_005083199.1| Lysidine-tRNA(Ile) synthetase, N-terminal domain-containing
protein, partial [Pseudovibrio sp. FO-BEG1]
gi|359345803|gb|AEV39177.1| protein containing Lysidine-tRNA(Ile) synthetase, N-terminal domain
[Pseudovibrio sp. FO-BEG1]
Length = 441
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 10/202 (4%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K RIA+GVSGG DSMAL L W E G L A TV+HGLR E+ E
Sbjct: 24 KSFRRIAIGVSGGADSMALLYLLKQWTQ-------ELGFAAPELYAFTVNHGLRAEAASE 76
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + + + E + W +P ++Q AARD+R+RL ++ H L +AH
Sbjct: 77 AVGVAQYCTRIEVPHETLL--WEGDKPSS-NIQSAARDVRHRLLRRASEDHGCDALFLAH 133
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
H +DQAE F+ RL+R SGV GLA + ++ + ++ + + + W
Sbjct: 134 HLEDQAETFLTRLARGSGVYGLACIRRDREMDGFHICRPLLNISKARLKAVLHSAHVPWF 193
Query: 260 EDPTNRSPLFVRNRIRMSLGDL 281
EDP+N F R + R + +L
Sbjct: 194 EDPSNEDEQFTRVKFRQAQSEL 215
>gi|373450190|ref|ZP_09542217.1| putative tRNA(Ile)-lysidine synthase (tilS gene) [Wolbachia
pipientis wAlbB]
gi|371932602|emb|CCE77214.1| putative tRNA(Ile)-lysidine synthase (tilS gene) [Wolbachia
pipientis wAlbB]
Length = 430
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 12/248 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++G + E +W + + +G++Q AR RY L K C + + L +AHH
Sbjct: 68 FAVSYAKELGAK-ESFMLNW-EKKNIKGNIQLQARKARYNLLTKWCKNNNVKYLFVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE F+LRL R SGV GL+ M + S + Y + + I + W+ED
Sbjct: 126 NDQAETFLLRLDRGSGVDGLSSMDYKSFLNGVYIFRPLLNFSRSEIERYAKLHQLRWIED 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N + R R L + +E + + +R + H ++ V V D
Sbjct: 186 RSNYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMHYTHLAFDDCVNVHD 245
Query: 321 QGYAVIDL 328
GY I L
Sbjct: 246 FGYIEIKL 253
>gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
Length = 441
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 10/202 (4%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K RIA+GVSGG DSMAL L W E G L A TV+HGLR E+ E
Sbjct: 24 KSFRRIAIGVSGGADSMALLYLLKQWTQ-------ELGFAAPKLYAFTVNHGLRAEAASE 76
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + + + E + W +P ++Q AARD R+RL ++ H L +AH
Sbjct: 77 AVGVAQYCTRIEVPHETLL--WEGDKPSS-NIQSAARDARHRLLRQASEDHGCDALFLAH 133
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
H +DQAE F+ RL+R SGV GLA + ++ + ++ + + + W
Sbjct: 134 HLEDQAETFLTRLARGSGVYGLACIRRDREMDGFHICRPLLNISKARLKAVLHSAHVPWF 193
Query: 260 EDPTNRSPLFVRNRIRMSLGDL 281
EDP+N F R + R + +L
Sbjct: 194 EDPSNEDEQFTRIKFRQAQSEL 215
>gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
Length = 368
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 106/220 (48%), Gaps = 11/220 (5%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
A PH RI + VSGGPDS AL L A W+ G +G L+A TVDHGLR E
Sbjct: 23 FAPFTPHPRILIAVSGGPDSTALLYLAARWRAG--RASGP------DLIAATVDHGLRAE 74
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ EA V + +G+ I+ W +P G +QEAAR+ RY L + +
Sbjct: 75 AAAEAEAVGAFATFLGVPHRIL--IWQGAKPTHG-IQEAAREARYDLLADAAREAGATAI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AH DDQAE + RL+R SG+ GL+GM + D+ ++ + +
Sbjct: 132 ALAHTRDDQAETVLFRLARGSGLSGLSGMRGDAARDGLALLRPLLDVPKARLVATLEAAS 191
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
+V DP+N P F R R+R L+ + AV++
Sbjct: 192 VAFVRDPSNSDPRFARPRLRAMAPTLAGEGLDARRLAVLA 231
>gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
gi|226695543|sp|B3CUJ5.1|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
Length = 441
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 39/317 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANI 142
++A+ VSGG DS+AL +L W E + G + I T+DH LR ES EA+
Sbjct: 22 KLAIAVSGGSDSLALMLLVKHW-----------NEKVKGEITILTIDHHLRSESTSEADY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
VS + I+ + V W+ + G++Q AR RY+L C +H I L+ HHAD
Sbjct: 71 VSSICQN--IKLQHVTLHWIH-KGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHAD 127
Query: 203 DQAELFILRLSRNSGVLGLAG----MAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
D E F +RL R +G+ GL+ + +I DLK + + N W
Sbjct: 128 DIVENFFIRLLRGAGLAGLSSHNLFFVNNVRIIRPLFNITKQDLKKY-----LEQQNIKW 182
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSEL---QAVISACRRTRSYVEHVCSNLI 312
+ DP+N S ++R ++R L + +F EL + ++S T++ +E V + +I
Sbjct: 183 INDPSNSSNKYLRTQVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQA-LESVNNEII 241
Query: 313 NEAVTVMD---QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST-SKLLL 368
+ V V+ G+AVID ++ + E + L+ +L + +P R S+ ++ L
Sbjct: 242 HYVVHVVKIYSAGFAVIDRKLFKKASPEARY--AILSYLLMIVGANTKPPRFSSLQRISL 299
Query: 369 HYIRTFPCKTSLTAAGC 385
H I+ + T T GC
Sbjct: 300 HDIQEY--NTYKTLHGC 314
>gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
Length = 313
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 13/180 (7%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155
MAL +L A W + + TVDHGLR E+ EEA V +G
Sbjct: 1 MALMLLAARWSLRETKR----------IAVATVDHGLRPEAAEEARRVGEWARALGFEHH 50
Query: 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215
I+R W +G + +QE ARD RYRL ++ AHHADDQAE + RL+R
Sbjct: 51 ILR--W-EGEKPRSRIQERARDARYRLLADCARTVGASAIVAAHHADDQAETILFRLTRG 107
Query: 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
SGV GLAGMA +S++ L+ ++ +C+ + + DP+N +P + R R+R
Sbjct: 108 SGVAGLAGMAPASRLDGLALLRPLLGLRKQALEALCEAAGQPFFRDPSNENPAYARVRLR 167
>gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
Length = 443
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 107/212 (50%), Gaps = 22/212 (10%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAIT 127
FS R+++ LKP +IA+ SGGPDS+AL +L A W K G + L+A T
Sbjct: 20 FSTRLSV--LKPSKKIAIAFSGGPDSLALLILAAEWAKKRRGIS-----------LVAFT 66
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR S EA + ++G+ ++ W +P +G +Q AARD RY L C
Sbjct: 67 VDHGLRAASAAEAKAAARLSDELGVPHRTLK--WRGVKPAKG-IQAAARDARYALLLAAC 123
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLK 243
G LL+AHH +DQAE F+LRL+R SGV GLA M S + + DL
Sbjct: 124 RSFGAGDLLVAHHLEDQAETFLLRLARGSGVDGLAAMPRARPLSDEEPAVRLLRPLIDLP 183
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L + DP+N + F R + R
Sbjct: 184 RSRLLATVARAGLTAIHDPSNENERFDRVKAR 215
>gi|348688733|gb|EGZ28547.1| hypothetical protein PHYSODRAFT_309379 [Phytophthora sojae]
Length = 737
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 53/353 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DSMAL +L + + LLA+TVDH LR ES EA V+
Sbjct: 36 IAVAVSGGADSMALMLL--------LREYLQKNRIKTSLLAVTVDHQLRAESNREALEVA 87
Query: 145 HRVSDMGIRCEIVR-CDWLD-------------GRPKQGHLQEAARDMRYRLFQKVCIQH 190
+ G + + C W +P++ ++E AR RY L ++VC ++
Sbjct: 88 KICAKRGGITHVTKVCHWYSEDEAGGLKDPSRPAKPRESKMEEQARQYRYDLLKQVCEEY 147
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS--SYAYSCHDDLKNHSIL 248
++ L +AH+ DQ E + RL R SGV GLAG+A S A + D ++
Sbjct: 148 RVRCLFVAHNLGDQLETTLFRLGRASGVNGLAGIANQVPFCSLDESAGNTGDSKPAEAVT 207
Query: 249 LI--------------CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS------SCSFKS 288
L+ C+ + W+ DP+N ++ R RIR L + + S
Sbjct: 208 LVRPLLSATKDQLIATCERFQQTWIHDPSNDDLVYDRVRIRQELQRVEREHGPDAVDLFS 267
Query: 289 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALV 348
+ Q ++ + +E + + + V+ + + + D L + L+++
Sbjct: 268 KFQQTAEKAKKEFARIERA---MFRKYTVAWEPDSVVVRMAVFRDPAMFDELLYRLLSII 324
Query: 349 LQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCY------LCPTPGSRG 395
+ + + P R ++ L I+ +T GC + P PG G
Sbjct: 325 ILHVGDKDAPPRLASVARLAADIQRLETGKQITLGGCRKSAPTEVAPVPGFFG 377
>gi|42521051|ref|NP_966966.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|61217299|sp|Q73FR9.1|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 431
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 24/310 (7%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 18 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRPESQKEAD 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 69 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQAE F+LRL R SGV GL+ M + S IF +++ ++ L
Sbjct: 127 DDQAETFLLRLERGSGVDGLSSMDYKSFLNGIDIFRPLLNFSRSEIEKYAKL-----HRL 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEA 315
W+ED +N + R R L + +E + + +R + H N+
Sbjct: 182 KWIEDRSNHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDC 241
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
V V D GY I L E+I L L ++ + +P R S+ + + I
Sbjct: 242 VNVHDLGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYSSLIAIFNRILQKD 299
Query: 376 CKTSLTAAGC 385
+ T +GC
Sbjct: 300 SNVNCTLSGC 309
>gi|338737863|ref|YP_004674825.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium sp. MC1]
gi|337758426|emb|CCB64251.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium sp. MC1]
Length = 458
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT--GGFNQNGEAGEFIDGLLAITVDHGL 132
A+A L + L VSGGPDSMAL L A W+ G N + TVDHGL
Sbjct: 17 ALAVLARFDHVVLAVSGGPDSMALMALAAEWRARFEGLKPN---------VSVATVDHGL 67
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ---KVCIQ 189
R S+ EA +V+ +G+ I+ W +P G L AAR+ RYRL + K
Sbjct: 68 RARSRHEAEMVAVEARRLGLPHAIL--SWDGEKPTSG-LSAAAREARYRLLEAHAKTIAA 124
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHS 246
I ++ AHH DDQAE F +RL+R +G+ GLA M + L
Sbjct: 125 ANIAIV-TAHHRDDQAETFAMRLARGAGLDGLASMRGERPLRDGAPIVLMRPLLAFPKAR 183
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 299
+L + EDPTNR + R R+R +L + SE A+ ++ RR
Sbjct: 184 LLATVALRGITYAEDPTNRDRRYERARVRSTLEQMEEAGLSSE--AIATSARR 234
>gi|402496762|ref|YP_006556022.1| ATPase [Wolbachia endosymbiont of Onchocerca ochengi]
gi|398650035|emb|CCF78205.1| ATPase [Wolbachia endosymbiont of Onchocerca ochengi]
Length = 439
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 13/194 (6%)
Query: 83 HRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++IA+ VSGG DS++L L W K ++ +A+TV+HGLR SKEEA
Sbjct: 27 NKIAVAVSGGVDSVSLLHLMVSWTKKRQYSLP----------VALTVNHGLRSGSKEEAE 76
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + +G++ + W + + +G++Q AR RY+L + C H I LLIAHH
Sbjct: 77 FVLNYTKKLGVKESFI-LKW-ENQSIKGNIQLQARKARYKLLTEWCKNHGIKYLLIAHHK 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SG+ GL+ M + S + + + W+ED
Sbjct: 135 DDQAETFLLRLERGSGIDGLSSMDWKSSFNGIHILRPLLNFSRSEVERYANLHQLRWIED 194
Query: 262 PTNRSPLFVRNRIR 275
+N+S + R R
Sbjct: 195 KSNQSLTYRRTLYR 208
>gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607, partial [Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24]
Length = 407
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 14/298 (4%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGG DS+ L L W + + + + A+TV+HGLR ES++EA+ V
Sbjct: 1 VSGGVDSVVLLHLMTNW--------AKKNKLLLPI-ALTVNHGLRPESQKEADFVVSYAK 51
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
++G + + +W + + +G++Q AR RY+L + C + + LL+AHH DDQAE F
Sbjct: 52 ELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETF 109
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPL 268
+LRL R SGV GL+ M + S + Y + + I + W+ED +N
Sbjct: 110 LLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNHDLK 169
Query: 269 FVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMDQGYAVID 327
+ R R L + +E + + +R + H N+ V V D GY I
Sbjct: 170 YRRTLYRNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIK 229
Query: 328 LEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGC 385
L E+I L L ++ + +P R S+ + + I + T +GC
Sbjct: 230 LSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYSSLIAIFNRILQKDSNVNCTLSGC 285
>gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58]
gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58]
Length = 314
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 106/224 (47%), Gaps = 32/224 (14%)
Query: 63 MTKYREAFSRRM-----AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAG 117
+T AF R+ A+ G P R + VSGGPDSMAL L A
Sbjct: 3 LTGDSAAFQTRLVDATSALVGDDPAIRFGIAVSGGPDSMALLCLAAS------------- 49
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
F + A+TVDHGLR ES +EA +V+ GI + D G++Q AR
Sbjct: 50 AFPGRVAAVTVDHGLRRESADEAALVARWCVAHGIEHVTLPAD----ATVTGNVQAWART 105
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAY 236
RYRL + H I ++ AHHADDQ E ++RL+R SG+ GLAG+ A S ++
Sbjct: 106 TRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLNRGSGIGGLAGVRAVSGRVIRPL-- 163
Query: 237 SCHDDLKNHSILL--ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
L +L +V+DP+NR F R +RM+L
Sbjct: 164 -----LGERKAMLQAFVDREGLPYVQDPSNRDRRFDRATLRMAL 202
>gi|386398091|ref|ZP_10082869.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM1253]
gi|385738717|gb|EIG58913.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM1253]
Length = 351
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 99/210 (47%), Gaps = 15/210 (7%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLR 133
AGLK + L VSGGPDS+AL L A W G L +T+DHGLR
Sbjct: 18 FAGLKGARGLLLAVSGGPDSVALMWLAARWHR----------SLAHGPRLTVVTIDHGLR 67
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+ EA V H + +G+ VR W +PK G L AAR+ RYRL +
Sbjct: 68 PEAAREAREVKHLATGLGLPHRTVR--WRGAKPKTG-LPAAAREARYRLLVQAARVAGAS 124
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQG 253
+L AH DDQAE ++RL R SG+ GL+ MA ++ D+ ++ +
Sbjct: 125 HVLTAHTRDDQAETLLMRLLRGSGLAGLSAMARLTERDGVILARPLLDVPKSQLIATLKR 184
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ +DPTN F R R+R L L+
Sbjct: 185 AKIGFADDPTNHDAAFTRPRLRALLPQLAG 214
>gi|354559288|ref|ZP_08978538.1| tRNA(Ile)-lysidine synthase [Desulfitobacterium metallireducens DSM
15288]
gi|353542877|gb|EHC12337.1| tRNA(Ile)-lysidine synthase [Desulfitobacterium metallireducens DSM
15288]
Length = 477
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 102/202 (50%), Gaps = 14/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ PH RI + VSGGPDSMAL + W+ ++ E G L+ V HGLR+ES E
Sbjct: 15 IPPHSRILVAVSGGPDSMALSHVL--WRY--VHEMSEQG---ISLVLTHVHHGLRQESDE 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA +V + C + R D G + AAR+ RY + + I+++ +L
Sbjct: 68 EAVMVKEMAKRWEVPCVVHRFDAQAYAQATGQSFETAAREWRYARWNEDMIEYKCDLLAT 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DQAE + RL R SG GLAG+ +I + + K +L CQ +
Sbjct: 128 AHHLGDQAETVLYRLLRGSGTAGLAGIYPRKGKIIRPFL-----NFKKEDVLDYCQREHI 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D TN PLFVRNRIR+ L
Sbjct: 183 PYAVDYTNFQPLFVRNRIRLEL 204
>gi|379022442|ref|YP_005299103.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
CA410]
gi|376323380|gb|AFB20621.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
CA410]
Length = 432
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 121/256 (47%), Gaps = 36/256 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIA+ VSGG DS+AL LT W N E L I+VDH LRE+SK+E + +
Sbjct: 23 RIAVAVSGGSDSVALLYLTNVWAKKN---NIE-------LFVISVDHNLREQSKQETHYI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I LL AHH DD
Sbjct: 73 QNISNSLNRKHYNLS---FDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDD 129
Query: 204 QAELFILRLSRNSGVLGLA--------GMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
E F LRL RNSG+ GL+ + +++ + L NH+I
Sbjct: 130 YVENFCLRLERNSGIFGLSSSNINWHNNIQIVRPLYNIPKSELVEYLVNHNI-------- 181
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEHVCSNLI 312
W ED +N S + RN +R L K+++ Q I+ + E + + I
Sbjct: 182 -KWFEDESNLSDKYKRNLVRQKLAK-EEDYIKADIILQQLKINNLLDDKFKPELISA--I 237
Query: 313 NEAVTVMDQGYAVIDL 328
EAV + + G+A +DL
Sbjct: 238 AEAVKIFEYGFAFLDL 253
>gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
McKiel]
gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
McKiel]
Length = 432
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 38/257 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIA+ VSGG DS+AL LT W N E L I+VDH LRE+SK+E + +
Sbjct: 23 RIAVAVSGGSDSVALLYLTNVWAKKN---NIE-------LFVISVDHNLREQSKQETHYI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I LL AHH DD
Sbjct: 73 QNISNSLNRKHYNLS---FDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK---------NHSILLICQGG 254
E F LRL RNSG+ GL+ SS I + H++++ ++
Sbjct: 130 YVENFCLRLERNSGIFGLS----SSNI------NWHNNIQIIRPLYNIPKSELVEYLVNH 179
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEHVCSNL 311
N W ED +N S + RN +R L K+++ Q I+ + E + +
Sbjct: 180 NIKWFEDESNLSDKYKRNLVRQKLAK-EEDYIKADIILQQLKINNLLDDKFKPELISA-- 236
Query: 312 INEAVTVMDQGYAVIDL 328
I EAV + + G+A +DL
Sbjct: 237 IAEAVKIFEYGFAFLDL 253
>gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
Length = 429
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+A VL + + + A+TVDHGLR E+ EA +V
Sbjct: 42 RLAVAVSGGSDSLATLVLLSA---------------LHPVAAVTVDHGLRPEAAAEAEVV 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
++ GI I+R D GR +G+L +AAR R RL IG + + H DD
Sbjct: 87 GQFCAERGIDHSILRWD---GRGARGNLMDAARRARLRLIGAWAQDRGIGAVALGHTGDD 143
Query: 204 QAELFILRLSRNSGVLGLAGM--AFSSQ---IFSSYAYSCHDDLKNHSILLICQGGNRDW 258
QAE F++RL+R +G+ GL+GM +F S+ F + +L+ H Q W
Sbjct: 144 QAETFLMRLAREAGLEGLSGMRESFESEGVLWFRPFLSQTRAELRGH-----LQRQGIGW 198
Query: 259 VEDPTNRSPLFVR 271
+EDP+N + F R
Sbjct: 199 IEDPSNENDRFDR 211
>gi|384215969|ref|YP_005607135.1| hypothetical protein BJ6T_22680 [Bradyrhizobium japonicum USDA 6]
gi|354954868|dbj|BAL07547.1| hypothetical protein BJ6T_22680 [Bradyrhizobium japonicum USDA 6]
Length = 391
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A WK G + + L +TVDHGLR E+ EA V
Sbjct: 27 LVLAVSGGPDSVALMWLAARWKRG-LARGPQ-------LTVVTVDHGLRPEAAREAREVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G+ +R W +P G L AAR+ RYRL + +L AH DDQ
Sbjct: 79 RLAAELGLVHRTLR--WRGAKPDTG-LPAAAREARYRLLARAARSVGASHVLTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RL R SG+ GL+ MA ++ D+ ++ + + +DPTN
Sbjct: 136 AETVLMRLLRGSGLAGLSAMARLTERDGVVLVRPLLDIPKSQLIATLRRAKIGFADDPTN 195
Query: 265 RSPLFVRNRIRMSLGDLSS 283
R F R R+R L L++
Sbjct: 196 RDTAFTRPRLRALLPQLAA 214
>gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
Length = 433
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 16/247 (6%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N N + +TV+HGLR+E+K+EA V
Sbjct: 20 AVAVSGGIDSMVLLHLSAQHR----NHNTP--------IILTVNHGLRQEAKQEALFVFQ 67
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY L + C +++I L++AH +DQA
Sbjct: 68 HSQNLNLKCHIL--NW-HGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQA 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++RL R SG+ GLAGM + + + +L N W+ DP+N
Sbjct: 125 ETIMIRLERGSGLDGLAGMQECTYLNGICILRPLLSVSRTELLQYASQNNIPWINDPSNN 184
Query: 266 SPLFVRNRIRMSLGDLSSCS-FKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYA 324
+ + R R L + + L + +R+ + H I+E + + GY
Sbjct: 185 NKKYKRTLYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVREAIDECLEFTNLGYI 244
Query: 325 VIDLEIL 331
I L++
Sbjct: 245 NIKLDVF 251
>gi|339319523|ref|YP_004679218.1| tRNA(Ile)-lysidine synthase [Candidatus Midichloria mitochondrii
IricVA]
gi|338225648|gb|AEI88532.1| tRNA(Ile)-lysidine synthase [Candidatus Midichloria mitochondrii
IricVA]
Length = 388
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 7/262 (2%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYRLF 183
+ VDHGLR +S EA ++ I E++ WLD K ++ + ARD RYRL
Sbjct: 12 LIVDHGLRTDSTAEAIETKAFLNHQDI--EVIILKWLDYDEKLSISNIHQKARDARYRLL 69
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ CI++ I L +AH+ +DQAE ++RL R +G+ GLA M+ + D
Sbjct: 70 IEYCIRNDIQHLALAHNKNDQAENVLIRLGRGTGIDGLARMSSHKVRENITVIRPLLDYT 129
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 303
I + N WV DP+N P F+R+R+R L + +L + + RTR Y
Sbjct: 130 RDEIEETLKRYNWPWVNDPSNLDPKFIRSRVRELLNSNNCLLTVDKLNLLAKSALRTRDY 189
Query: 304 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST 363
+E + E VTV D GY +D++ + E+I L + L+ +L+ + Q +R +
Sbjct: 190 LEKMTLAAFYEVVTVKDLGYIKLDIQKF-LTMHEEIQL-RVLSCILRSL-NNQYSIRLNN 246
Query: 364 SKLLLHYIRTFPCKTSLTAAGC 385
+ LL+ IR F + T GC
Sbjct: 247 LENLLNKIRHFEKWSDATLHGC 268
>gi|374577670|ref|ZP_09650766.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM471]
gi|374425991|gb|EHR05524.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM471]
Length = 349
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 63 MTKYREAFSRRMA---MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
M+K S R A AGLK + L VSGGPDS+AL L A W +++ G
Sbjct: 1 MSKDNSPISAREAKRLFAGLKGAQGLLLAVSGGPDSVALMWLAARW-----HRSLARGPR 55
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +T+DHGLR E+ EA V + +G+ VR W +PK G L AAR+ R
Sbjct: 56 ---LTVVTIDHGLRPEAAREAREVKRLATGLGLPHRTVR--WRGAKPKTG-LPAAAREAR 109
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
YRL + +L AH DDQAE ++RL R SG+ GL+ MA ++
Sbjct: 110 YRLLVQAARVAGASHVLTAHTRDDQAETLLMRLVRGSGLAGLSAMARLTERDGVVLARPL 169
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
D+ ++ + + +DPTN F R R+R L L++
Sbjct: 170 LDVPKSQLIATLKRAKIGFADDPTNHDAAFTRPRLRALLPQLAA 213
>gi|418054438|ref|ZP_12692494.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium denitrificans 1NES1]
gi|353212063|gb|EHB77463.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium denitrificans 1NES1]
Length = 444
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL VL A W+ +NG + L A TVDH LR E+ EA V+
Sbjct: 27 VVLAVSGGPDSMALLVLAAEWRQ---RRNGA----LPSLSAATVDHRLRPEASREAGFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK--VCIQHQIGVLLIAHHAD 202
+G+ + W D +P G + +AAR RYRL + + ++ AHH D
Sbjct: 80 RESLRLGLPHATL--PWTDEKPLSG-IPDAARQARYRLLEAHARSLAASTVAVVTAHHLD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLICQGGNRDWV 259
DQAE F +RL+R +GV GL+ M + L ++ + V
Sbjct: 137 DQAETFAMRLARGAGVTGLSAMPAERALLEGSTVRLLRPLLPFPKSRLIATLEARGVPCV 196
Query: 260 EDPTNRSPLFVRNRIRMSL 278
+DPTN+ + R RIR +L
Sbjct: 197 DDPTNKDSRYERARIRHAL 215
>gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
Length = 417
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 140/315 (44%), Gaps = 34/315 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DSMAL L + +GE L A TVDHGLR S +EA
Sbjct: 23 KLGIALSGGGDSMALMHL--------LHDCFGSGEVQ--LFAATVDHGLRPGSADEAAAA 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +GI E++ W D RP+ G+LQ AR RY L QH I VL + H ADD
Sbjct: 73 GAAAARLGIPHEVLH--WAD-RPQDGNLQAQARAARYELLCGWARQHGIPVLALGHTADD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE ++R++R SGV GL+GMA D+ + + DW EDP+
Sbjct: 130 QAETVLMRMARASGVTGLSGMAARRTHKGVTLLRPLLDVTRSELRRYLEARGVDWAEDPS 189
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS-----ACRRTRSYVEHVCSNLIN---EA 315
N F R R+R +L L+ E+ A ++ A YV +L + A
Sbjct: 190 NEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYVFLAARDLAHVQAGA 249
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
V + + + + +EI + + L +Q++ P R + + R
Sbjct: 250 VVLCQRKFRTLPVEISH----------RLLVRAVQWVSGAAYPPRRVPMEKAVQAARN-- 297
Query: 376 CKTSLTAAGCYLCPT 390
+S T AGC+L T
Sbjct: 298 -GSSATLAGCHLVST 311
>gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035]
gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035]
Length = 418
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 138/312 (44%), Gaps = 30/312 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DS+AL L GW G A+TVDHGLR S +EA V
Sbjct: 23 RLGVAVSGGSDSLALLHLLHGWSLVGGPTPA----------AVTVDHGLRPTSAQEAVDV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + I + VR DG G+L + AR RY L + + + I H DD
Sbjct: 73 AQICARLAIPHDTVRWQGWDG---SGNLPDHARRARYALLTDWARANDLHDIAIGHTQDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD---DLKNHSILLICQGGNRDWVE 260
AE F++RL+R +GV GLA M ++ + H DL ++ + + W++
Sbjct: 130 VAETFLMRLARGAGVDGLAAM---RPRWTQSGVTFHRPLLDLSREALRDHLRRLGQSWID 186
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
DPTN ++R R R SL L+ + A ++ RT S V + A +
Sbjct: 187 DPTNDDTTYLRPRARQSLMALAPMGLGA---ATLADVARTLSGVRTALDHATLTAARALL 243
Query: 321 Q---GYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCK 377
Q G +ID N + + + + +LQ++ + P RG+ L +I+
Sbjct: 244 QVQSGDILIDHPGFN--DLPEEIARRLMQAMLQWLAGEEYPPRGTA---LASFIKAARDG 298
Query: 378 TSLTAAGCYLCP 389
++ GC L P
Sbjct: 299 HTMPLHGCLLLP 310
>gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
51888]
gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
51888]
Length = 443
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL VL + W+ +NG L TVDHGLR ES EA V+
Sbjct: 27 VVLAVSGGPDSMALLVLASEWRQ---RRNGAP----PSLSVATVDHGLRPESPREAEFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF--QKVCIQHQIGVLLIAHHAD 202
+G+ V W +P +G + +AAR RYRL + ++ AHH
Sbjct: 80 SEAQRLGL--PHVTLPWTGEKPSRG-IPDAARRARYRLLDDHARALSASDVAVVTAHHQG 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLICQGGNRDWV 259
DQAE F +RL+R +GV GLAGM + S L ++ + V
Sbjct: 137 DQAETFAMRLARGAGVNGLAGMPAERVLHEGSTVSLVRPLLAFAKSRLIATLEARGLSSV 196
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 299
+DP+N + R R+R +L DL + A+ ++ RR
Sbjct: 197 DDPSNSDHRYERARMRSALSDLDAAGISP--AALATSARR 234
>gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
Length = 417
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 21/209 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+ L V+ W+ G G A L A+TVDH LR E+ +EA V
Sbjct: 23 RLAVAVSGGSDSLGLLVVLNDWRLAG----GPA------LHAVTVDHRLRPEAAQEAAKV 72
Query: 144 SHRVSDMGIRCEIVR-CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ +G+ +I+ DW DGR G+L + AR RY L + I + IAH AD
Sbjct: 73 AADCKRLGVPHDILTWTDW-DGR---GNLSDQARRARYGLMAQWARGQGIACIAIAHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-CHDDLK--NHSILLICQGGNRDWV 259
DQAE F++RL+R +GV GL+ M S+ F S+ + C L H + +G WV
Sbjct: 129 DQAETFLMRLARGAGVDGLSAM---SERFESHGVTFCRPALAIFRHELRAALEGRGMTWV 185
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
EDP+N P + R + R +L +L+ +
Sbjct: 186 EDPSNEDPRYERVKARAALQELAPLGITT 214
>gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
Length = 338
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 11/211 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 17 RQLFAGWKNLPALVLAVSGGPDSVALLWLAARWRRS-LKKGPD-------LLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI + W +PK G + EAAR+ RY L +
Sbjct: 69 RAAAAHEAREVKRLASALGIAHRTL--TWRGTKPKTG-VPEAAREARYELLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+ AH DDQAE ++RL+R SG+ GLAGMA S+ D+ ++
Sbjct: 126 VAIATAHTQDDQAETILMRLTRGSGLTGLAGMAAQSERHGVALLRPLLDVPKARLVATLN 185
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ DPTN P + R+R+R + L+S
Sbjct: 186 RAKIAYANDPTNHDPAYTRSRLRAMMPVLAS 216
>gi|337740064|ref|YP_004631792.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM5]
gi|386029081|ref|YP_005949856.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM4]
gi|336094149|gb|AEI01975.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM4]
gi|336097728|gb|AEI05551.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM5]
Length = 341
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 11/211 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 20 RQLFAGWKNLPALVLAVSGGPDSVALLWLAARWRRS-LKKGPD-------LLAVTVDHGL 71
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI + W +PK G + EAAR+ RY L +
Sbjct: 72 RAAAAHEAREVKRLASALGIAHRTL--TWRGTKPKTG-VPEAAREARYELLARAARSASA 128
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+ AH DDQAE ++RL+R SG+ GLAGMA S+ D+ ++
Sbjct: 129 VAIATAHTQDDQAETILMRLTRGSGLTGLAGMAAQSERHGVALLRPLLDVPKARLVATLN 188
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ DPTN P + R+R+R + L+S
Sbjct: 189 RAKIAYANDPTNHDPAYTRSRLRAMMPVLAS 219
>gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
Length = 422
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 37/280 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGG DSMA+ L GW A + GL +TVDHGLR S++EA +V+
Sbjct: 25 IALAVSGGGDSMAMLTLAHGW----------ARVYGVGLHVVTVDHGLRSASRQEAEMVA 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G ++ W QG+LQ+AAR R RL + QI +L AH DDQ
Sbjct: 75 KECAVLGHPHTTLKWQW----DNQGNLQDAAR--RARLSLIGAWRGQIAHVLFAHTRDDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
AE ++RL R SGV GL+ MA + Q+ DL++++ +L +V
Sbjct: 129 AETMLMRLLRGSGVDGLSAMAETRDMDGWQVIRPLLSETRADLRHYADVLRVP-----YV 183
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVT- 317
+DP+N F R R+R G + + + A +A R R+ +E ++ VT
Sbjct: 184 DDPSNEDETFDRVRLR---GTIKALGMDTRALANTAARMGRARTALEARAVDVARACVTE 240
Query: 318 ----VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 353
M G +ID + +++E + LA LQ++
Sbjct: 241 DRWEWMPTGDLLIDRDRF--AEVEPDTQLRVLAGALQWVT 278
>gi|212529304|ref|XP_002144809.1| PP-loop family protein [Talaromyces marneffei ATCC 18224]
gi|210074207|gb|EEA28294.1| PP-loop family protein [Talaromyces marneffei ATCC 18224]
Length = 633
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 115/265 (43%), Gaps = 62/265 (23%)
Query: 66 YREAFSRRMAMAGLKP----HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
+REA++ + P RI + VSGGPDSMAL L + N + F+
Sbjct: 22 FREAWTNILPRYQRAPVNHIPRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFV- 80
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMR 179
VDH REES EEA++V+ +S++ I+ E++ DWL G KQ + AR R
Sbjct: 81 ------VDHKFREESTEEAHMVTKWLSNLDIQSEVLTLDWLPGESPKKQMAFETLARTKR 134
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS------- 232
Y+ C+++++ LLI HH DD E +LR++ + + GLAG+A ++I
Sbjct: 135 YQALGIACLENRLNTLLIGHHLDDNVETGLLRMTPTAQLEGLAGIAPVARIPECHGLWGV 194
Query: 233 --------------SYAYSCHDDLKNH---------------------------SILLIC 251
S+ + + H SIL C
Sbjct: 195 SESGSIETIRGRQRSFEFDLKEGKMTHFSTVDWKFDMTTGGVLLCRPLLPFYKSSILETC 254
Query: 252 QGGNRDWVEDPTNRSP-LFVRNRIR 275
+ +V DPTN P L +RN IR
Sbjct: 255 REAKVPYVTDPTNSDPTLTIRNTIR 279
>gi|407784263|ref|ZP_11131440.1| tRNA(Ile)-lysidine synthetase, TilS [Oceanibaculum indicum P24]
gi|407197450|gb|EKE67510.1| tRNA(Ile)-lysidine synthetase, TilS [Oceanibaculum indicum P24]
Length = 386
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ G +P R+A+ VSGG DS+AL +L W + G A + +TVDHGLR +
Sbjct: 17 LGGFEPSPRLAIAVSGGADSLALTLLADLWAR---RRGGRA-------IGLTVDHGLRPD 66
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
S EA V+ ++ I + W +P+ G LQ AAR+ RYRL + C I L
Sbjct: 67 SAAEARQVAGWLAARNIPHHTL--AWQGEKPRIG-LQAAAREARYRLLEDFCAAKGILHL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
L+AHHA DQAE LRL SG GLAGMA + + + Q
Sbjct: 124 LLAHHAGDQAETLALRLDAGSGPTGLAGMASIVERPFCRLLRPLLTVSGQELRAYLQQVG 183
Query: 256 RDWVEDPTN 264
+ W+EDP+N
Sbjct: 184 QGWIEDPSN 192
>gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193]
gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193]
Length = 399
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DS+AL L K + E L+ TVDHGLR ES++EA
Sbjct: 4 RIGIAVSGGGDSVALMHLL---KECFCDDPVE-------LMVATVDHGLRAESRQEAEDT 53
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++G+R EI+ W G K G+LQ+ AR RY L Q+ I VL + H ADD
Sbjct: 54 ARMARELGLRHEIL--TWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADD 111
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE I+RL R SGV GLAG+ L+ + + W+EDP+
Sbjct: 112 QAETVIMRLMRASGVNGLAGIPVRRTQDGVSLLRPLLGLRRVELRQYLDAAGQSWIEDPS 171
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
N + R +IR +L L A ++
Sbjct: 172 NEDESYDRIKIRKALAVLEDLGLTVPALATVA 203
>gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi]
Length = 501
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +TV+HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTVNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++ L R SG+ GL+GM S Y IL WVEDP+N
Sbjct: 180 AETVLMHLERGSGIDGLSGMHERSVFGDITIYRPLLGFTRQEILEYATQKQLSWVEDPSN 239
Query: 265 RSPLFVRNRIR 275
+ P + R R
Sbjct: 240 QDPKYRRTFFR 250
>gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico]
gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia]
gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
Length = 501
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +TV+HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTVNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++ L R SG+ GL+GM S Y IL WVEDP+N
Sbjct: 180 AETVLMHLERGSGIDGLSGMHERSVFGDITIYRPLLGFTRQEILEYATQKQLSWVEDPSN 239
Query: 265 RSPLFVRNRIR 275
+ P + R R
Sbjct: 240 QDPKYRRTFFR 250
>gi|402848945|ref|ZP_10897191.1| tRNA(Ile)-lysidine synthetase [Rhodovulum sp. PH10]
gi|402500821|gb|EJW12487.1| tRNA(Ile)-lysidine synthetase [Rhodovulum sp. PH10]
Length = 366
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 23/213 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGGPDS AL VL A W+ AG LLA+TVDHGLR ++ EA V+
Sbjct: 33 LVIAVSGGPDSTALLVLAARWRK---TLQAGAGPR---LLAVTVDHGLRPQAALEAQAVA 86
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ R W+ +P G +QEAAR RYRL + + +L AH DDQ
Sbjct: 87 ALAQSLGVPHLTTR--WVGEKPATG-IQEAARIARYRLLAEAARETGARHVLTAHTRDDQ 143
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--------------DLKNHSILLI 250
AE + RL+R SGV GL+GMA + + + H D+ ++
Sbjct: 144 AETVLFRLARGSGVTGLSGMARVAPLPVAAHTGRHGAPAADPVVLVRPFLDVAKARLIAT 203
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ + + ED +NR P + R R+R L +L++
Sbjct: 204 LRAEHIAFAEDASNRDPRYTRARLRALLPNLAT 236
>gi|392382173|ref|YP_005031370.1| protein of unknown function [Azospirillum brasilense Sp245]
gi|356877138|emb|CCC97941.1| protein of unknown function [Azospirillum brasilense Sp245]
Length = 481
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 14/199 (7%)
Query: 70 FSRRM-AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+ RM + G + R+A+GVSGG DS+ L +L W A E +LA+ V
Sbjct: 20 FAARMDRLGGFETRPRVAVGVSGGADSLGLVLLAQRW----------AAERGGDVLALIV 69
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES EA V + G+ I+R W +P G +QEAAR R+ L + C
Sbjct: 70 DHGLRAESAAEAARVGGWLQARGVAHAILR--WDGEKPASG-IQEAARAARHHLLAERCR 126
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + L +AHH DDQAE +LR SR SG+ GLAGMA + DL + ++
Sbjct: 127 KEGVLHLALAHHRDDQAETVLLRFSRGSGIDGLAGMAPVRAAGAVRVIRPLLDLPHKRLV 186
Query: 249 LICQGGNRDWVEDPTNRSP 267
C+ ++W+EDP P
Sbjct: 187 ATCRAFGQEWIEDPVQPQP 205
>gi|407799316|ref|ZP_11146209.1| hypothetical protein OCGS_1282 [Oceaniovalibus guishaninsula
JLT2003]
gi|407058501|gb|EKE44444.1| hypothetical protein OCGS_1282 [Oceaniovalibus guishaninsula
JLT2003]
Length = 404
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 124/279 (44%), Gaps = 36/279 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L A W AG L +TVDHGLR+ S +EA +V
Sbjct: 21 LGLAVSGGGDSMALLHLAAEW----------AGPSRRKLHVVTVDHGLRDGSADEAVMVR 70
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +G+ + + R G+LQ+AAR R L + + +L+ H DDQ
Sbjct: 71 RQAAALGLTHDTLVWR----RETMGNLQDAARSARRGLIAAWAARLGVDAVLLGHTRDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGM---------AFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AE ++R++R SGV GLAGM A+ + + D L +
Sbjct: 127 AETVLMRMARGSGVDGLAGMAEVGRAQGIAWLRPLLTRGRAELRDWLTKRGL-------- 178
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINE 314
DW EDP N + F R R R G L+ + ++SA R R + +L +
Sbjct: 179 -DWAEDPGNENSAFDRVRARRMAGTLADLGLSAARLELLSAHMARARDVLNDAMRDLAGQ 237
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 353
AV D V+D L ++ E + LA L++I
Sbjct: 238 AVR-QDGPDLVLDRAALLAARPETRM--RLLAAGLRWIS 273
>gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
Length = 450
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 133/303 (43%), Gaps = 35/303 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A+ L + + SGG DS+AL V+ + W NG + L +TVDHGL
Sbjct: 10 RSALGRLAGEGPLGIACSGGGDSLALLVIASDWA----RANGRS------LQVLTVDHGL 59
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R+ S +EAN V+ +G C + W D RP G LQ ARD R+RL + C +
Sbjct: 60 RKSSADEANHVAAMADRLGWPCTCL--TWDDARPGAG-LQARARDARHRLLARACRDLGL 116
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-CHDDLKNHSILLIC 251
L +AH DDQ+E LRL+ G S+ + S A S + ++ +L C
Sbjct: 117 TELALAHTRDDQSETVWLRLAAG-------GSWRSAAVMSDRAPSPVWPEGRDLDLLRPC 169
Query: 252 QGGNR------------DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 299
R DWV+DP+N + R R R LG LS F+ + A + A R
Sbjct: 170 LDVTRAELRRVLSDAGIDWVDDPSNEDDRYARVRARGDLGLLSEAGFQPDRFAELGALLR 229
Query: 300 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKI-EDIFLSKFLALVLQFICQRQRP 358
E + +A V+ + + ++ S+I + L+ ALV+ Q P
Sbjct: 230 PVHAAERRAAWHCGQAALVV-HAWGGVSIDRAAWSRIVPAVRLTLLDALVMAVSGQSVSP 288
Query: 359 VRG 361
RG
Sbjct: 289 SRG 291
>gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
Length = 630
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 116/265 (43%), Gaps = 62/265 (23%)
Query: 66 YREAFSRRMAMAGLKP----HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
+REA++ + P RI + VSGGPDSMAL L + E F+
Sbjct: 22 FREAWTNILPRYQRPPLNHIPRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFV- 80
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-PKQGHLQEA-ARDMR 179
VDH REES EEA+ VS +S+M I E++ DW G PK+ E AR R
Sbjct: 81 ------VDHKFREESTEEAHKVSSWLSNMDILSEVLTLDWEAGETPKKKMAFETLARTKR 134
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI--------- 230
Y+ K C ++Q+ LLI HH DD E +LR++ + + GLAG+A ++I
Sbjct: 135 YQALGKACFKNQLNTLLIGHHLDDNVETGLLRMTPTAKLEGLAGIAPVARIPECHGLWGV 194
Query: 231 ---------------------------FSSYAYS----------CHDDLKNH--SILLIC 251
FS+ +S C L + SIL C
Sbjct: 195 SESGSFETIRGRQRSFEFDLDEGKLTHFSADDWSFTMATGGILLCRPLLPFYKASILETC 254
Query: 252 QGGNRDWVEDPTNRSP-LFVRNRIR 275
+ N +V DPTN P L +RN IR
Sbjct: 255 REANVPYVTDPTNSDPTLTMRNTIR 279
>gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
gi|166988063|sp|A8GLX9.1|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
Length = 430
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 28/252 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LRE+SK+E V
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLREQSKQETYYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEHVCSNLINEAV 316
ED +N S + RN IR L + K+E+ Q I+ + E + + I EAV
Sbjct: 183 EDESNSSDKYRRNIIRQKLAK-GAGYIKAEIILQQLKINDLLDNKFKPELISA--IAEAV 239
Query: 317 TVMDQGYAVIDL 328
+ + G+A +DL
Sbjct: 240 KIFEYGFAFLDL 251
>gi|383501010|ref|YP_005414369.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia australis str.
Cutlack]
gi|378932021|gb|AFC70526.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia australis str.
Cutlack]
Length = 430
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 116/267 (43%), Gaps = 58/267 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLRAQSKQETYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHHADD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLEFDILVLLTAHHADD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSS----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIR------------------MSLGDLSSCSFKSELQAVISACRRTR 301
ED +N S + RN IR + + DL FK EL + I+
Sbjct: 183 EDESNSSDKYRRNIIRQKLAKGVGYIKAEIILQQLKINDLLDNKFKPELISAIA------ 236
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVIDL 328
EAV + + G+A +DL
Sbjct: 237 ------------EAVKIFEYGFAFLDL 251
>gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
Length = 377
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 129/285 (45%), Gaps = 19/285 (6%)
Query: 73 RMAMAGLKP---HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
R+A L+P +I L VSGGPDS+AL +L + W + G A L TVD
Sbjct: 36 RLAADLLRPWEEAQKILLAVSGGPDSIALMLLASRWARA-REERGLAAPL---LHVSTVD 91
Query: 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ 189
HGLR S EA V+ G+ E + W G+PK +QE AR+ RY L +
Sbjct: 92 HGLRTGSGAEAEAVAAWAKAAGLPHETL--IWNGGKPKT-RIQERAREARYDLLCACAAR 148
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS----SQIFSSYAYSCHDDLKNH 245
V+ AHHADDQAE + RL+R SG GLAGM+ I S SC
Sbjct: 149 LGADVIATAHHADDQAETILFRLTRGSGPGGLAGMSARFFRHGLIHSRPLLSC----DKA 204
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVE 305
+++ C+ D+ DP+N +P F R R+R L L+ +
Sbjct: 205 ALIAYCEARRHDFFADPSNCNPAFARTRMRALLKLLADEGLDRAALLRLGRRAARAEEAL 264
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQ 350
+ + VT+ G AVID+ L + ++I + A +L+
Sbjct: 265 AARARAVAADVTLQSGGGAVIDMAQLA-REPQEILIRVVAAQILE 308
>gi|347757296|ref|YP_004864858.1| tRNA(Ile)-lysidine synthetase [Micavibrio aeruginosavorus ARL-13]
gi|347589814|gb|AEP08856.1| tRNA(Ile)-lysidine synthetase [Micavibrio aeruginosavorus ARL-13]
Length = 346
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 123/256 (48%), Gaps = 29/256 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ +SGGPDSMAL L A + + I AITVDHGLR S +EA V
Sbjct: 35 IAVALSGGPDSMALLHLLA--------RVCPSQTIIH---AITVDHGLRANSADEAKQVG 83
Query: 145 HRVSDM-GIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
VS + + IVR W +P + E+AR RYRL ++ C++ I L +AH+ D
Sbjct: 84 TWVSSLHNVHHHIVR--WEGDKPDSA-IMESARAARYRLLEQFCVERGIENLWVAHNRTD 140
Query: 204 QAELFILRLSRNSGVLGLAGM-------AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
QAE F+ RL++ SG+ GLA + + S QI DDL C N
Sbjct: 141 QAETFLFRLAKGSGLDGLAAIHEQTSSPSGSVQILRPLLDVAKDDLT-----AWCVDQNI 195
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNLINEA 315
+ DP+N++ F R R+R S+ L++ + L R R+ ++H +
Sbjct: 196 PFATDPSNQNTAFARIRLRQSMDVLAAEGLSEKRLATTARRMGRARAALDHFTDQAWAQV 255
Query: 316 VTVMDQGYAVIDLEIL 331
VTV + G +DL L
Sbjct: 256 VTVQNDGI-TMDLHAL 270
>gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 442
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 16/248 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H A+ VSGG DSM L L+A T +F +L TV+HGLR E+ +EA
Sbjct: 23 HDNYAIAVSGGIDSMVLLHLSAICNT----------KFTPTIL--TVNHGLRSEAAQEAL 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ ++C I+ +W +P Q ++Q +AR +RY L + C Q+QI L++AH
Sbjct: 71 FVYQHSQNLNLKCHIL--NWHGEKP-QSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQK 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++RL R SG+ GLAGM + + + ++ N WV D
Sbjct: 128 NDQAETIMMRLERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHD 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSC-SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
+N + + R R L ++ + + L +R+ + H I+E + +
Sbjct: 188 ISNDNKKYKRTLYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNN 247
Query: 321 QGYAVIDL 328
G+ I L
Sbjct: 248 LGFIKIKL 255
>gi|407787515|ref|ZP_11134656.1| tRNA(Ile)-lysidine synthetase [Celeribacter baekdonensis B30]
gi|407199793|gb|EKE69808.1| tRNA(Ile)-lysidine synthetase [Celeribacter baekdonensis B30]
Length = 419
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 106/215 (49%), Gaps = 20/215 (9%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A A KP ++A+ VSGG DSMAL L A W A + L A+TV+HGLR
Sbjct: 18 AFAYDKPD-QLAVAVSGGGDSMALLHLMAEW----------AEDEKIRLWAVTVNHGLRP 66
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EEA VS + ++ + W G QG+LQ+AAR RYRL I
Sbjct: 67 EAAEEARFVSEVAQKLQVKHTTL--TWT-GWSGQGNLQDAARRARYRLMTDWAKAQGINT 123
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMA---FSSQIFSSYAYSCHDDLKNHSILLIC 251
+ +AH ADDQAE F +RL+R SG+ GL GM S I + + L
Sbjct: 124 IALAHTADDQAETFFMRLARASGIDGLTGMQRRRVSDGITWVRPLLMQERFELRQYLRDL 183
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
+ + W++DP+N + F R + R ++ +LS
Sbjct: 184 R---QPWIDDPSNDNEAFDRIKARRAMEELSKLGI 215
>gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
gi|75537001|sp|Q4UN67.1|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
Length = 430
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 116/267 (43%), Gaps = 58/267 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KIAAAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSS----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIR------------------MSLGDLSSCSFKSELQAVISACRRTR 301
ED +N S + RN IR + + DL FK EL + I+
Sbjct: 183 EDESNSSDKYRRNIIRQKLAKGEDYIKADIILQQLKINDLLDNKFKPELISAIA------ 236
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVIDL 328
EAV + + G+A +DL
Sbjct: 237 ------------EAVKIFEYGFAFLDL 251
>gi|427427983|ref|ZP_18918025.1| tRNA(Ile)-lysidine synthetase [Caenispirillum salinarum AK4]
gi|425882684|gb|EKV31363.1| tRNA(Ile)-lysidine synthetase [Caenispirillum salinarum AK4]
Length = 480
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+LA+TVDHGLR E+ EEA V R++ GI I+ + G ++Q AR +RYRL
Sbjct: 70 VLALTVDHGLRPEAAEEARAVGRRLAARGIDHAILTNE---GPAPHANVQAEARGLRYRL 126
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ C I LL AHH +DQAE +LRL R SG+ GL+ MA +++ + D+
Sbjct: 127 LLERCRGEGILHLLTAHHREDQAETLLLRLGRGSGLRGLSAMAPVAEMAEARVLRPLLDV 186
Query: 243 KNHSILLICQGGNRDWVEDPTN 264
S+ C G WV+DP+N
Sbjct: 187 PRASLSATCAGAGVKWVDDPSN 208
>gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
Length = 479
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ G P ++A+ +SGGPDSM L L + +F + AIT+DH R E
Sbjct: 16 LGGTVPK-KVAVALSGGPDSMLLTWLLS------------QCQF--EIYAITIDHKYRTE 60
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EA V RV + + I D+ G K + +E AR+ RY +VC + +I
Sbjct: 61 SSREALAVHERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIP 120
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS------- 246
VL + HH DDQ E FI RL NS + GLAG S + S S L N +
Sbjct: 121 VLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILR 180
Query: 247 ---------ILLICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 281
IL CQ N +V DPTN+ L RN +R + D+
Sbjct: 181 PFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDV 225
>gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid
E]
gi|383486897|ref|YP_005404577.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. GvV257]
gi|383487471|ref|YP_005405150.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Chernikova]
gi|383488317|ref|YP_005405995.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Katsinyian]
gi|383489161|ref|YP_005406838.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Dachau]
gi|383499295|ref|YP_005412656.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500136|ref|YP_005413496.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. RpGvF24]
gi|386081874|ref|YP_005998451.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii str. Rp22]
gi|6226316|sp|Q9ZEA3.1|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii str. Madrid
E]
gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii str. Rp22]
gi|380757262|gb|AFE52499.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. GvV257]
gi|380757833|gb|AFE53069.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. RpGvF24]
gi|380760350|gb|AFE48872.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Chernikova]
gi|380761196|gb|AFE49717.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Katsinyian]
gi|380762041|gb|AFE50561.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380762884|gb|AFE51403.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Dachau]
Length = 430
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 130/284 (45%), Gaps = 50/284 (17%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS++L L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAIAVSGGSDSISLLYLANIWARKN---NIE-------LFVISVDHNLRPQSKQENYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S++ + + D + +LQE AR+ RY L +C++ + VLL AHH DD
Sbjct: 71 HTISSNLNRKYYNLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLA--------GMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
E F LRL RNSG+ GL+ + +++ + L NH I
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNIHWYNNIQIIRPLYNIPKSELVEYLVNHKI-------- 179
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE--LQAVISACR-RTRSYVEH----VC 308
W ED +N S + RN IR L FK E ++A IS + +T +E
Sbjct: 180 -KWFEDESNLSDKYRRNIIRQKL-------FKEENYIKAEISLQQLKTNKLIEDELKPAL 231
Query: 309 SNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFI 352
+ I EAV + + G+ +DL D FL++ A ++ F+
Sbjct: 232 ISAIAEAVKIFEYGFTFLDLVKF------DKFLNEVKAQIINFL 269
>gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str.
Gardel]
gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
Length = 442
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 16/248 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H A+ VSGG DSM L L+A T +F +L TV+HGLR E+ +EA
Sbjct: 23 HDNYAIAVSGGIDSMVLLHLSAICNT----------KFTPTIL--TVNHGLRSEAAQEAL 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ ++C I+ +W +P Q ++Q +AR +RY L + C Q+Q+ L++AH
Sbjct: 71 FVYQHSQNLNLKCHIL--NWHGEKP-QSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQK 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++RL R SG+ GLAGM + + + ++ N WV D
Sbjct: 128 NDQAETIMMRLERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHD 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSC-SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
+N + + R R L ++ + + L +R+ + H I+E + +
Sbjct: 188 ISNDNKKYKRTLYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNN 247
Query: 321 QGYAVIDL 328
G+ I L
Sbjct: 248 LGFIKIKL 255
>gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510]
gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510]
Length = 448
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 108/204 (52%), Gaps = 24/204 (11%)
Query: 70 FSRRMA-MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+R +A + G +P IA+GVSGG DS+AL +L W E LLA+TV
Sbjct: 12 FARALAALGGFEPAPAIAVGVSGGGDSVALALLLRHWVA----------EHGGSLLALTV 61
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR +S EA+ V ++ + + ++R W +P G LQ AAR R+RL C
Sbjct: 62 DHGLRPDSAAEASAVGRTMARLDVPHHVLR--WEGEKPSTG-LQAAARAARHRLLATACA 118
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLK 243
+ I L +AHH DDQAE +LRL+R SGV GLAGMA +I HD L
Sbjct: 119 EAGILHLALAHHRDDQAETVLLRLARGSGVDGLAGMAPVRADGPVRIIRPLLGFPHDRL- 177
Query: 244 NHSILLICQGGNRDWVEDPTNRSP 267
L C+ W+EDP+N +P
Sbjct: 178 ----LATCRAEGVGWIEDPSNANP 197
>gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|75498061|sp|Q5GTD2.1|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control, MesJ [Wolbachia endosymbiont strain TRS
of Brugia malayi]
Length = 431
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 12/248 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W E + +A+ V+HGLR ES+EE
Sbjct: 18 NNKVAVAVSGGIDSIVLLHLITSW--------AEKRQ-CPPPIALAVNHGLRPESQEEVE 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G++ + +W K G++Q AR RY L + C + + L IAHH
Sbjct: 69 FVVSYAKELGVKKSFI-LNWKRQNIK-GNVQSQARKARYELLTEWCKNNDVKHLFIAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+LRL R SG+ GL+ M + S + I WVED
Sbjct: 127 DDQAETFLLRLERGSGLDGLSSMDYKSSLNGVCMLRPLLSFSRSRIKKYADFYRLKWVED 186
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLINEAVTVMD 320
+N+S + R R L + +E + + +R + H N+ V V D
Sbjct: 187 RSNQSLKYKRTLYRNLLKASGNQEILTERICLTTLHIKRATKALMHYTRLAFNDCVNVHD 246
Query: 321 QGYAVIDL 328
GY I L
Sbjct: 247 LGYIEIKL 254
>gi|406706632|ref|YP_006756985.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium HIMB5]
gi|406652408|gb|AFS47808.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium HIMB5]
Length = 343
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 13/202 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+GVSGGPDS+AL L + A +F VDH LR S +EA V
Sbjct: 42 FAVGVSGGPDSLALAYLCKVY----------ALKFGIKQKFYIVDHKLRSNSTKEAQHVK 91
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ I +I+ W +PK ++Q AR+ RY L K C ++ I ++I HH +D+
Sbjct: 92 KLLKKNSIEAKIL--TWRGAKPK-SNIQARAREKRYDLIAKECKKNNIKHIIIGHHLEDK 148
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E FI+RL+R SG+ GL S + + K + ++ I +D++ DP+N
Sbjct: 149 LENFIIRLTRGSGLRGLVSFNRKSSMSDIIIERPLLNFKKNELVFITSHVFKDFISDPSN 208
Query: 265 RSPLFVRNRIRMSLGDLSSCSF 286
+ F R RIR L +LS F
Sbjct: 209 ENQDFKRVRIRNFLKNLSLEGF 230
>gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 523
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ +G+SGGPDSM L L N + + AIT+DH R SK EA +
Sbjct: 25 KVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLK-------IHAITIDHSFRAGSKVEAQKL 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ +++ GI+ I D+ D PK + +E AR R+ +C + +I L + HH D
Sbjct: 78 TPTMNNWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPFLFLGHHKD 137
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD-------------DLKNHSILL 249
DQ E F+ RL NS + GLAG S + SS + D I+
Sbjct: 138 DQVETFVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLETKDGQVFLVRPLLDFYKDDIVK 197
Query: 250 ICQGGNRDWVEDPTNRSP-LFVRNRIRMSLG 279
C+ N +V DPTN++P L RN +R G
Sbjct: 198 TCELHNIPYVIDPTNKNPKLTRRNFLRQVFG 228
>gi|61216416|sp|Q5P9R1.2|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
Length = 466
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +T +HG R E+ E V
Sbjct: 38 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTGNHGFRAEADHETRFVQ 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 88 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++ L R SG+ GL+GM S Y IL WVEDP+N
Sbjct: 145 AETVLMHLERGSGIDGLSGMHERSVFGDITIYRPLLGFTRQEILEYATQKQLSWVEDPSN 204
Query: 265 RSPLFVRNRIR 275
+ P + R R
Sbjct: 205 QDPKYRRTFFR 215
>gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
Length = 371
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 11/196 (5%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K + L VSGGPDS+AL L A W+ A + L+A+TVDH LR E+ E
Sbjct: 35 KASRALVLAVSGGPDSVALMWLAARWR--------RAMKRGPDLVAVTVDHALRREAARE 86
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V + I +R W +P G L AAR+ RY L K +L H
Sbjct: 87 ARQVKQLAKSLSIPHRTLR--WTGPKPATG-LPAAAREARYALLFKAARSLGASHVLTGH 143
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
DDQAE ++R+SR SG+ GL+ M+ + ++ ++ + D+
Sbjct: 144 TLDDQAETVLMRISRGSGIAGLSAMSRETMRDGFVLVRPLLNVPKARLIATLKKAKIDYA 203
Query: 260 EDPTNRSPLFVRNRIR 275
EDPTNR F R R+R
Sbjct: 204 EDPTNRDLGFTRPRLR 219
>gi|379018568|ref|YP_005294802.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hlp#2]
gi|376331148|gb|AFB28382.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hlp#2]
Length = 478
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVSHNIKW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLG 279
ED +N S + RN IR L
Sbjct: 182 FEDESNSSDKYRRNVIRQKLA 202
>gi|402570705|ref|YP_006620048.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus meridiei DSM
13257]
gi|402251902|gb|AFQ42177.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus meridiei DSM
13257]
Length = 484
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 72 RRMAMAGLKPHH-RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
R+ + L P ++ + VSGGPDSMAL + W+ + Q E+G+ I L+ V H
Sbjct: 6 RKYILPQLIPSQTKVMVAVSGGPDSMALSHIL--WR---YVQE-ESGKEIS-LVLTHVHH 58
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQ 189
G+R+ES +EA +V + C I R D + G QEAAR+ RY +++ +
Sbjct: 59 GVRKESDDEAVLVQQMADKWKLPCLIHRFDSKQYAKESGKSFQEAAREWRYARWKEDMEE 118
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM--AFSSQIFSSYAYSCHDDLKNHSI 247
++ +L AHH DQAE + RL R SG GLAGM A S I +S S+
Sbjct: 119 YKCSLLATAHHLGDQAETILYRLLRGSGTAGLAGMYPAKDSIIRPLLTFS------KASV 172
Query: 248 LLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
L C + D +N P++VRNRIR+ L S+ S +Q ++
Sbjct: 173 LDYCAREAIPYALDHSNEEPIYVRNRIRLELLPELERSYNSRIQEIL 219
>gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
gi|378720737|ref|YP_005285624.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Colombia]
gi|378722088|ref|YP_005286974.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Arizona]
gi|378723447|ref|YP_005288331.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hauke]
gi|379017001|ref|YP_005293236.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Brazil]
gi|379017237|ref|YP_005293471.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hino]
gi|379711806|ref|YP_005300145.1| tRNA(Ile)-lysidine synthase [Rickettsia philipii str. 364D]
gi|166988066|sp|A8GQJ7.1|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|189035969|sp|B0BVY4.1|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
gi|376325525|gb|AFB22765.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Brazil]
gi|376325761|gb|AFB23000.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Colombia]
gi|376327112|gb|AFB24350.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Arizona]
gi|376328451|gb|AFB25688.1| tRNA(Ile)-lysidine synthase [Rickettsia philipii str. 364D]
gi|376329802|gb|AFB27038.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hino]
gi|376332462|gb|AFB29695.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hauke]
Length = 478
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVSHNIKW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLG 279
ED +N S + RN IR L
Sbjct: 182 FEDESNSSDKYRRNVIRQKLA 202
>gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries]
gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries]
Length = 501
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +T +HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTGNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++ L R SG+ GL+GM S Y IL WVEDP+N
Sbjct: 180 AETVLMHLERGSGIDGLSGMHERSVFGDITIYRPLLGFTRQEILEYATQKQLSWVEDPSN 239
Query: 265 RSPLFVRNRIR 275
+ P + R R
Sbjct: 240 QDPKYRRTFFR 250
>gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisB18]
gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
BisB18]
Length = 346
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A W+ + G A + ITVDHGLR E+ EA V
Sbjct: 27 VVLAVSGGPDSLALMWLAARWRKA--LRRGPA------ISVITVDHGLRPEAAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++ + +R W +P G + AAR+ RY+L + ++ AH DDQ
Sbjct: 79 RHAAELDLPHRTLR--WRGDKPSTG-VPAAAREARYQLLARAARAAGASHVMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++R+SR SG+ GLA MA ++ F ++ ++ + DP+N
Sbjct: 136 AETLLMRMSRGSGIAGLAAMARQTERFGVIIARPLLEVSKAQLVATLDKAKIGFATDPSN 195
Query: 265 RSPLFVRNRIR 275
P + R R+R
Sbjct: 196 TDPRYARPRLR 206
>gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
Length = 342
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 101/221 (45%), Gaps = 12/221 (5%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H RI L VSGGPDS AL +L W+ G +AG L TVDHGLR E++ EA
Sbjct: 29 HARILLAVSGGPDSTALMLLAQRWREG-----RDAGPE---LAVATVDHGLRAEARTEAE 80
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + I+ D PK LQEAAR RY + AH
Sbjct: 81 AVGALAARLSLPHAIL--DLSSPLPK-ARLQEAARHARYEALLAHARAIGASAIATAHTL 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE + RL R SG+ GLAG+ + L ++ C+ + ED
Sbjct: 138 DDQAETVLFRLMRGSGIGGLAGIPSERALAEVELLRPLLGLPKAHLIEECRRAGIGFAED 197
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
P+NR P F R R+R L L+ + A + A R TR+
Sbjct: 198 PSNRDPRFARARLRALLPALAEEGLDAPALARL-ANRMTRA 237
>gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1]
gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Magnetospirillum magneticum AMB-1]
Length = 443
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 129/266 (48%), Gaps = 19/266 (7%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR MA G + R+A+ VSGG DS+AL +L A W + GE +LA+TV
Sbjct: 11 FSRLMAPLGPFEAAPRLAVAVSGGADSLALALLAADWAKA---RGGE-------VLALTV 60
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH LR ES EA V ++ GI I+ W +P LQ AAR RY L + C
Sbjct: 61 DHRLRPESAAEAARVGAWLARDGISHRIL--AWEGDKPAA-DLQAAARAARYGLLGEACA 117
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I L +AHH DDQAE +LRL R SG+ GL MA ++ +S+ L +
Sbjct: 118 AEGILHLALAHHQDDQAETLLLRLGRGSGLEGLGAMA--AERPTSWGRLLRPLLPVPRVR 175
Query: 249 LICQGGNR--DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS-ELQAVISACRRTRSYVE 305
L +R +W DP+NR+P F R R+R GDL++ L R ++ V+
Sbjct: 176 LEATLRHRGQEWTSDPSNRNPAFARVRLRHLAGDLAAEGMTPRRLAETAGRLARAQAAVD 235
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEIL 331
+ + VT+ G+ + E L
Sbjct: 236 SMVAEAAARHVTLDPAGFGRLRPEAL 261
>gi|341583293|ref|YP_004763784.1| tRNA(Ile)-lysidine synthetase [Rickettsia heilongjiangensis 054]
gi|340807519|gb|AEK74107.1| tRNA(Ile)-lysidine synthetase [Rickettsia heilongjiangensis 054]
Length = 535
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVSHNITW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQAVISACRRTRSY 303
ED +N S + RN IR L LS +++ E + R T +Y
Sbjct: 182 FEDESNSSDKYRRNVIRKKLAKGADYIRHLSKPAYRKEFKG--DTERNTAAY 231
>gi|350273092|ref|YP_004884405.1| cell cycle protein mesJ [Rickettsia japonica YH]
gi|348592305|dbj|BAK96266.1| cell cycle protein mesJ [Rickettsia japonica YH]
Length = 535
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 33/232 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQEIHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVSHNITW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQAVISACRRTRSY 303
ED +N S + RN IR L LS +++ E + R T +Y
Sbjct: 182 FEDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYRKEFKG--DTERNTAAY 231
>gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
Length = 297
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 137/272 (50%), Gaps = 27/272 (9%)
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR ES +EA +V + +GI C+++ W +P + ++Q AR+ RY L K C
Sbjct: 21 VDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR-NIQSLAREARYSLLSKEC 77
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD------- 240
++ I LL+ HH++D E F++R+ R SG+ GL S Y D
Sbjct: 78 KKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGLVSFN------KSVKYKDEDLNILRPL 131
Query: 241 -DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACR 298
+L+ + ++ I + + +++DP+N + ++ R RIR L L+ +L+ I R
Sbjct: 132 LNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDLKKLKLTIDNLR 191
Query: 299 RTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQR 357
+ ++ +V NL + + + + ++ + S E +F S L V+Q I ++
Sbjct: 192 DSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSH-EVVFRS--LTFVIQKIGKKYY 248
Query: 358 PVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 387
PVRG + L++ I +TF + +T GC++
Sbjct: 249 PVRGKSINELINRIILKTF---SKITLGGCFV 277
>gi|269958448|ref|YP_003328235.1| ATPase [Anaplasma centrale str. Israel]
gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel]
Length = 447
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 155/363 (42%), Gaps = 37/363 (10%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L G F++ I +TV+HG R E+ E V
Sbjct: 26 AVAVSGGVDSMTLLNLV-----GMFHKTQATSRPI----VLTVNHGFRAEADYETRCVQK 76
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
R ++G+ C I+R W P + QE AR++RY L + C++H + LL AH+ DQA
Sbjct: 77 RALELGLECRILR--WGGYIPSKS--QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGNRDWVEDPT 263
E ++ L R SGV GL+GM S +F + C + IL WVEDP+
Sbjct: 133 ETVLMHLERGSGVDGLSGMHERS-VFGNITI-CRPLLNFTRQEILQYATQERLFWVEDPS 190
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
N+ + R R + + + E L S R S + H + +++ + G
Sbjct: 191 NQDSKYRRTFFRNLIAESKNPGVIIERLCRTTSHMYRALSCILHYVRSSLDDCLEFSPLG 250
Query: 323 YAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTA 382
+ I + L + + S+ L L L + + R S+ +L +R T T
Sbjct: 251 FITIKSQELR--SVPEEIASRLLLLSLMAMGGKDHKPRYSSFWPILTQMRQGGDFTPRTL 308
Query: 383 AGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSN 442
GC V DG EL +I E R CV+ +I++ + ++
Sbjct: 309 HGCK-------------VFKESDGNFSIVRELARI----EGRICVSTTAEIMQWDRRFTI 351
Query: 443 HLI 445
++
Sbjct: 352 KIV 354
>gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 483
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L L + K + AIT+DH R E+ EA V
Sbjct: 23 KVAVALSGGPDSMLLTWLLSQCKFE--------------IYAITIDHKYRPEASREALSV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
RV + + I D+ G K + +E AR+ RY +VC I VL + HH
Sbjct: 69 YERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCYDKDIPVLFLGHHR 128
Query: 202 DDQAELFILRLSRNSGVLGLAGM----------------AFSSQIFSSYAYSCHDDLKNH 245
DDQ E FI RL NS + GLAG F +Q D
Sbjct: 129 DDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQVRILRPFWDYDKQ 188
Query: 246 SILLICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 281
IL CQ N +V DPTN+ L RN +R + D+
Sbjct: 189 DILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDI 225
>gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [alpha proteobacterium BAL199]
gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [alpha proteobacterium BAL199]
Length = 426
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 127/279 (45%), Gaps = 20/279 (7%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155
MAL LT W G +G A LL TVDHGLR E+ EA V + G
Sbjct: 1 MALLHLTDAWARG----HGRA------LLVYTVDHGLRPEAVVEAGRVGQVCAMAGRPHR 50
Query: 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215
I+R WL +P G LQ AAR RY L + C + LL+AHH +DQAE + R+ R
Sbjct: 51 ILR--WLGTKPGSG-LQAAARRARYDLMAQACRDDGVVDLLLAHHLEDQAETVLHRIDRG 107
Query: 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+G GLAGMA D+ +L C+ +W EDP+N P F R +R
Sbjct: 108 TGPDGLAGMARVRAFDGVRLLRPLLDVPKVRLLATCRSVGVEWAEDPSNSDPRFARTELR 167
Query: 276 M---SLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 332
L D+ S + L + SA R+ ++ ++ + + +V+ G ++ +L
Sbjct: 168 QLAPVLADVGVTSIR--LGRLASAMASARAALDGFTADWMAQHASVLLVGAVRMNRAVLV 225
Query: 333 PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
+ + + + + L+ I P+R + LL +I
Sbjct: 226 EAPV--VLRRRLIDRALRAIGGNNYPLRSDGLERLLAWI 262
>gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
6260]
Length = 471
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ + +++ F +K R+A+ +SGG DSM L L + +K + E
Sbjct: 1 MITIAQFQNCFHACFGATTVKAPRRLAIALSGGVDSMCLAYLLSQYK--------QVYEP 52
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +IT+DHG R +S+ EA V+ V + GI + R + K + +E AR MR
Sbjct: 53 SLELHSITIDHGYRSDSEIEAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMR 112
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
Y F++ C + I LL+AH+ DDQ E FI RL +NS + GLAG+
Sbjct: 113 YAEFERFCRGNNIEGLLVAHNLDDQIETFIQRLRQNSSIFGLAGL 157
>gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654]
Length = 417
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 137/320 (42%), Gaps = 42/320 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL + W G Q G+A + A+TVDHGLR+E+ EA V+
Sbjct: 23 LVVAVSGGGDSMALLHVAQAW---GRTQ-GKA------VSALTVDHGLRDEAATEAARVA 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+D+G+ + DW D QG+LQ AR RY L +LI H DD
Sbjct: 73 EICADLGVAHRTL--DWPDW-DGQGNLQAMARAARYDLIADAAPAGA--AILIGHTMDDA 127
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD------- 257
AE F++RL+R SGV GL S++ S++ H L L + + RD
Sbjct: 128 AETFLMRLARGSGVDGL------SRMRSTWTDRGH--LWLRPFLTVRRAALRDWLHDREI 179
Query: 258 -WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEA 315
W++DPTN + R R+R +L L+ +E L A R +EH
Sbjct: 180 GWIDDPTNDDTQYDRVRMRQALDLLAPLGIDAERLTMTAQAMTEARQALEHWAEQ-AARG 238
Query: 316 VTVMDQGYAVIDLEILN--PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT 373
+ G V D + P + D ++ + V RP R + L+ +R
Sbjct: 239 TAWTEAGDVVFDQAKVQALPRETHDRLIAHAIGWV---ASAAYRPRRAA----LIQAVRD 291
Query: 374 FPCKTSLTAAGCYLCPTPGS 393
T GC L G+
Sbjct: 292 VTETGRATLGGCLLTAKGGT 311
>gi|374318817|ref|YP_005065315.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca 13-B]
gi|383750707|ref|YP_005425808.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca str. D-CWPP]
gi|360041365|gb|AEV91747.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca 13-B]
gi|379773721|gb|AFD19077.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca str. D-CWPP]
Length = 533
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVRHNIKW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLG 279
ED +N S + RN IR L
Sbjct: 182 FEDESNSSDKYRRNVIRQKLA 202
>gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
6260]
Length = 471
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ + +++ F +K R+A+ +SGG DSM L L + +K + E
Sbjct: 1 MITIAQFQNCFHACFGATTVKAPRRLAIALSGGVDSMCLAYLLSQYK--------QVYEP 52
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +IT+DHG R +S+ EA V+ V + GI + R + K + +E AR MR
Sbjct: 53 SLELHSITIDHGYRSDSEIEAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMR 112
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
Y F++ C + I LL+AH+ DDQ E FI RL +NS + GLAG+
Sbjct: 113 YAEFERFCRGNNIEGLLVAHNLDDQIETFIQRLRQNSSIFGLAGL 157
>gi|383481008|ref|YP_005389923.1| tRNA(Ile)-lysidine synthase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933347|gb|AFC71850.1| tRNA(Ile)-lysidine synthase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 477
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 160/400 (40%), Gaps = 84/400 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQ--------------------- 291
ED +N S + RN IR L LS +++ E +
Sbjct: 183 EDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYREEFKGDTERSTAAYTSVGEDALLRG 242
Query: 292 ---------------AVISACRRTRSYVEHVCS----NLINEAVTVMDQGYAVIDL---- 328
A+IS +T +E+ + I EAV + + G+A +DL
Sbjct: 243 SILSLEAKFGTMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYGFAFLDLVKFD 302
Query: 329 EILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 388
+ N KI+ I FL ++ I + R R + + +L I T T GC +
Sbjct: 303 KFSNEVKIQII---NFLLII---ISGQSRAARFYSVEPILKLI-TQDVNFKNTLHGCIIK 355
Query: 389 PTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVT 428
+ L+ LP L + R C+T
Sbjct: 356 RIQN----ELLIYREFGKKLPESKILLDKSVIWDNRFCIT 391
>gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
gi|259533756|sp|C4K162.1|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
Length = 533
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KMSIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
E F LRL RNSG+ GL+ SS I ++ + H ++ ++ N W
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI--NWYNNIHIIRPLYNIPKSELVEYLVSHNIKW 181
Query: 259 VEDPTNRSPLFVRNRIRMSLG 279
ED +N S + RN IR L
Sbjct: 182 FEDESNSSDKYRRNVIRQKLA 202
>gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246]
gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246]
Length = 478
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLVR-HNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
gi|20140671|sp|Q92JK0.1|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
Length = 478
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLVR-HNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|383482880|ref|YP_005391794.1| tRNA(Ile)-lysidine synthase [Rickettsia montanensis str. OSU
85-930]
gi|378935234|gb|AFC73735.1| tRNA(Ile)-lysidine synthase [Rickettsia montanensis str. OSU
85-930]
Length = 481
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSNSNINWYNNIQIIRPLYNIPKSELVEYLV-SHNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|379713106|ref|YP_005301444.1| tRNA(Ile)-lysidine synthase [Rickettsia massiliae str. AZT80]
gi|376333752|gb|AFB30984.1| tRNA(Ile)-lysidine synthase [Rickettsia massiliae str. AZT80]
Length = 477
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 157/396 (39%), Gaps = 76/396 (19%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQ--------------------- 291
ED +N S + RN IR L LS +++ E +
Sbjct: 183 EDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYREEFKGDTERNTAAYTSVGEEALLRG 242
Query: 292 ---------------AVISACRRTRSYVEHVCS----NLINEAVTVMDQGYAVIDLEILN 332
A+IS +T +E+ + I EAV + + G+A +DL +
Sbjct: 243 SILSLEAKFGTMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYGFAFLDL--VK 300
Query: 333 PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPG 392
K + + + +L I + R R + + +L I T T GC +
Sbjct: 301 FDKFSNEVKVQIINFLLIIISGQSRAARFYSVEPILKLI-TQDVNFKNTLHGCIIKRIQN 359
Query: 393 SRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVT 428
+ L+ LP L + R C+T
Sbjct: 360 ----ELLIYREFGKKLPESKILLDKSVIWDNRFCIT 391
>gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 503
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L L K N + + AIT+DH R S EEA V
Sbjct: 23 KVAVALSGGPDSMLLTWLLQNQKRQMKNLD---------IYAITIDHKYRSGSHEEAKKV 73
Query: 144 SHRVSDMGIRCEIVRCDWLDG-RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ D + I ++ D PK+ + +E AR+ RYR+ ++C + I VL + HH
Sbjct: 74 HQWIKDWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESIPVLFMGHHR 133
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--------------DLKNHSI 247
DDQ E FI RL NS + GLAG S + +S S ++ + I
Sbjct: 134 DDQLETFIQRLQGNSSIFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARPFLEFDKKDI 193
Query: 248 LLICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDL 281
L C +V D TN L RN +R +G++
Sbjct: 194 LETCNANGIHYVTDLTNGDVGLTRRNYLRYLIGEV 228
>gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
Length = 417
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 120/261 (45%), Gaps = 31/261 (11%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ + VSGG DS AL L A Q E I L A TVDHGLR ++ EA
Sbjct: 22 RRLGVAVSGGSDSTALMRLLAD-----IAQR----EQI-ALFAATVDHGLRADAASEAAT 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V++ + GI E ++ DG G+LQ+ AR RYRL + +G + + H AD
Sbjct: 72 VANLAHNWGIPHETLKWRGWDG---TGNLQDHARRARYRLLTGWAQANGLGAIALGHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
DQAE ++RL+R +GV GL+ MA + + L+++ L QG
Sbjct: 129 DQAETLLMRLARAAGVSGLSAMAGMRREGETLLLRPMLAVTRARLRDY---LTAQG--IA 183
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAV 316
W++DP+N+ F R + R +L L+ +E L V + R + +
Sbjct: 184 WIDDPSNQDLRFDRIKTRQALSGLTQIGITAESLSRVAENLAQAREALAQYAQESAAGVM 243
Query: 317 TVMD-------QGYAVIDLEI 330
VMD +G+A + EI
Sbjct: 244 RVMDGDLCVDPEGFAALPEEI 264
>gi|347536318|ref|YP_004843743.1| tRNA(Ile)-lysidine synthase [Flavobacterium branchiophilum FL-15]
gi|345529476|emb|CCB69506.1| tRNA(Ile)-lysidine synthase [Flavobacterium branchiophilum FL-15]
Length = 436
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 120/255 (47%), Gaps = 34/255 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ESKEE 139
+I L VSGG DSM L L FI +I + H LR+ ES+ +
Sbjct: 20 KILLAVSGGLDSMVLTDL-----------------FIKTKFSIAIAHCNFNLRDTESQGD 62
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ ++ I + + L + Q AAR++RY FQ + QH+I + A
Sbjct: 63 QEFVATFCTNKHIPLFVKSFETLQFANDNKLSTQVAARNLRYEWFQNILKQHEIDFIATA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HHADD E FI+ LSR +G+ GL GM F ++ I Y ++++N+++ N
Sbjct: 123 HHADDNLETFIINLSRGTGIDGLKGMPFYNNNIVRPLLYFSRENIQNYAL-----KNNIQ 177
Query: 258 WVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W ED +N S ++RN+IR L +L+ SF + Q T++ + + L+
Sbjct: 178 WREDSSNASDKYLRNKIRHQIVPILKELNP-SFLNNFQKAQLFLDDTQTLAKDAAT-LLF 235
Query: 314 EAVTVMDQGYAVIDL 328
E +T+M G DL
Sbjct: 236 EKLTLMQNGVIYFDL 250
>gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
gi|166988065|sp|A8F0E8.1|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
Length = 477
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-SHNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099]
gi|61216717|sp|Q98F87.1|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099]
Length = 454
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 132/306 (43%), Gaps = 55/306 (17%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
H VSGG DS AL +L F++ G + + LLA+T+DHGLR+ S EA
Sbjct: 20 HGAVAAVSGGSDSTALLLLL----KHHFDRTGSSAK----LLAVTIDHGLRQGSAAEAQA 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ ++ GI + W +P G L AARD RY L + IG+++ H AD
Sbjct: 72 VAKLCAERGIAHRTL--TWTGRKPSTG-LPAAARDARYHLLAEAARAEGIGLIVTGHTAD 128
Query: 203 DQAELFILRLSRNSGVL-----GLAGMAFSS----------QIFSSYAYSCHDDLKNHSI 247
DQAE ++R +R+ + GLAGMA ++ + + + D L+ +
Sbjct: 129 DQAETVLMRHARDRELADLAGRGLAGMAPATLYDWREWIVRPLLGTRRSALRDFLRREHV 188
Query: 248 LLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL----QAVI-------SA 296
W EDPTN F R R+R +L S+ ++ L QA + SA
Sbjct: 189 ---------GWAEDPTNIDEAFERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASA 239
Query: 297 CRRTRSYVEHVCSNLI--NEAVTVMDQGYAVIDLEILNPSKIEDIFLSK-------FLAL 347
R + LI + A+ + D A+ L IL + FL F+ L
Sbjct: 240 ANLIRRIASQPSTGLIRLDPALLIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRL 299
Query: 348 VLQFIC 353
F+C
Sbjct: 300 KAGFLC 305
>gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
Length = 483
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L + K + AIT+DH R ES EA V
Sbjct: 23 KVAVALSGGPDSMLLTWFLSQCKFE--------------IYAITIDHKYRPESSREALSV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
RV + + I D+ G K + +E AR RY +VC I VL + HH
Sbjct: 69 YERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCYDKDIPVLFLGHHR 128
Query: 202 DDQAELFILRLSRNSGVLGLAG------------MAFSSQIFSSYA----YSCHDDLKNH 245
DDQ E FI RL NS + GLAG ++ +S +F+ + D
Sbjct: 129 DDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQVRILRPFWDYDKQ 188
Query: 246 SILLICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 281
IL CQ N +V DPTN+ L RN +R + D+
Sbjct: 189 DILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDI 225
>gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
Length = 426
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 108/222 (48%), Gaps = 26/222 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL L A +NG L TVDHGLR +S EA V
Sbjct: 24 KLGIAVSGGSDSIALMHLFAALA----RKNGA------DLAIATVDHGLRTDSLIEARGV 73
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + +D+G+ +I+ P Q G+LQ AR RYRL + +I + + H AD
Sbjct: 74 AQQAADLGLSHDILTWQ----HPAQSGNLQAEARAARYRLLGEWATAREIEAVAVGHTAD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRD 257
DQAE F++RL R SGV GL+GMA +I DL+ + L + N
Sbjct: 130 DQAETFLMRLRRASGVAGLSGMASRHHRDGIEILRPLLGIRRSDLRAY---LTAREIN-- 184
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACR 298
WV+DP+N F R R+R +L L + L AV R
Sbjct: 185 WVDDPSNLDMKFERVRVRDALKALKPLGLTVDALTAVADNMR 226
>gi|365901248|ref|ZP_09439099.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Bradyrhizobium
sp. STM 3843]
gi|365418015|emb|CCE11641.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Bradyrhizobium
sp. STM 3843]
Length = 369
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL L A W+ +Q + I A+TVDHGLR E+ EA V
Sbjct: 36 LVLAVSGGPDSMALMWLAARWR----DQRAQGPRLI----AVTVDHGLRREAAREAREVK 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +R W +P G + EAAR RYRL + ++ AH DDQ
Sbjct: 88 RVARTLDLPHRTLR--WRGDKPASG-VPEAARAARYRLLVQAARSAGASHIVTAHTRDDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RL R SG+ GLA M+ S+ + ++ Q ++EDPTN
Sbjct: 145 AETLLMRLLRGSGIAGLAAMSAISEREGLALARPLLGISKAQLIATLQAAEIKFIEDPTN 204
Query: 265 RSPLFVRNRIRMSLGDLSS 283
P F R R+R + L++
Sbjct: 205 VDPAFTRPRLRALMPALAA 223
>gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
gi|122942816|sp|Q0C5V2.1|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
Length = 367
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 136/335 (40%), Gaps = 42/335 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+AL +L W + G L A+TVDHGLR ES+ EA V
Sbjct: 27 VGVAVSGGSDSLALLILAHRWAA----RRGRV------LRALTVDHGLRPESRAEAEAVG 76
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+DMGI +I+R + R Q A R R+ + +LL H ADDQ
Sbjct: 77 RLCADMGIEHDILRLEGAAPR------QSALRRGRHAALARTIADKSGHLLLTGHTADDQ 130
Query: 205 AELFILRLSRNSGVLGLAGM------AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
AE F++R + SG GLAGM + + ++ ++ + W
Sbjct: 131 AETFLMRARQGSGWYGLAGMRPLSLSPVWPEGEGVFIARPLLGIRREALRAFLRDEGLGW 190
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEHVCSNLINEA 315
+DP+N +P F R R+R L C S V+S R R + +
Sbjct: 191 ADDPSNDNPAFERVRMRRLL-----CPEMSRNVPVLSLVDRFQTLRMIEDGAIWRWMTAN 245
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
V + G V P + ++ L ++LQ R+ P RG + + L I +
Sbjct: 246 VRAGEAGIHVASFAGHPPERA-----ARALGMLLQIAAGREMPPRGESLRRLAEEIVSKG 300
Query: 376 CKTSLTAAGCYLCPTPGSRGTKALVCSSID-GPLP 409
T GC + + +C + GPLP
Sbjct: 301 DFRGATLGGCRIT------ARRTHICLKPECGPLP 329
>gi|339022592|ref|ZP_08646520.1| Ile-tRNA lysidine synthase TilS [Acetobacter tropicalis NBRC
101654]
gi|338750406|dbj|GAA09824.1| Ile-tRNA lysidine synthase TilS [Acetobacter tropicalis NBRC
101654]
Length = 409
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGG DS+ L L + W+ L+A VDHGLR ES EEA +
Sbjct: 25 IALAVSGGGDSLCLAWLASRWR--------------KRLIAFVVDHGLRPESAEEARLTV 70
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R++D+G+ I+ L P+ + E AR RY C + LL+ H ADDQ
Sbjct: 71 SRLADLGVPGRILTLTDLAKGPR---MAERARQARYAALAHACREMGCLDLLLGHQADDQ 127
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE +R SG GLAGM +S+ + ++ + WV+DP+N
Sbjct: 128 AETVAMRQRAGSGPTGLAGMGWSTVLPDMRLVRPLLGFSRAALRNTLRQAGVAWVDDPSN 187
Query: 265 RSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
R R+R +L GD ++ + + ++ +Y +++ N + +G
Sbjct: 188 EDIKAERVRVRQALLTGDRRDTLWQEAIHYGRARMQQEAAYTQYLAQN-----AAFLPEG 242
Query: 323 YAVIDLEILNPSKIEDIFLS 342
+ + + P+ + + S
Sbjct: 243 WVCLGSTLPEPALLSSLIRS 262
>gi|374605069|ref|ZP_09678012.1| tRNA(Ile)-lysidine synthetase [Paenibacillus dendritiformis C454]
gi|374389339|gb|EHQ60718.1| tRNA(Ile)-lysidine synthetase [Paenibacillus dendritiformis C454]
Length = 539
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 130/295 (44%), Gaps = 27/295 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGGPDSM L A TG +G+ ++ V HG R +ES EEA
Sbjct: 40 RIVIAVSGGPDSMLLLHAIAA-LTGHRPGSGQ-------IIIAHVHHGFRPQESDEEARF 91
Query: 143 VSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V +GIR + R D W + + Q AAR +RY ++V + Q ++ +AH
Sbjct: 92 VEREAERLGIRVAMKRVDAPGW--AAEHKMNAQAAARQLRYDFLKEVAAREQAPIIALAH 149
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
HADDQAE ++RL R +G GL+GMA+ + ++ +L C+ +V
Sbjct: 150 HADDQAETVLMRLLRGTGSTGLSGMAWKREADGFSFVRPLLGVRKAELLEWCRLRGIAYV 209
Query: 260 EDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
D +N ++RNR+R+ + + + + L R ++E L V
Sbjct: 210 TDSSNAKTDYLRNRVRLDVMPQLEQENPGLVASLCRTADVLREENDWIEEQARQLFQCVV 269
Query: 317 TVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
+ G V + S + + L + L QR+ KL+L+Y+
Sbjct: 270 KTVKDGEDV----PMESSPPDGVVLDRRALLQAHVALQRR------LIKLILNYL 314
>gi|383483412|ref|YP_005392325.1| tRNA(Ile)-lysidine synthase [Rickettsia parkeri str. Portsmouth]
gi|378935766|gb|AFC74266.1| tRNA(Ile)-lysidine synthase [Rickettsia parkeri str. Portsmouth]
Length = 478
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYT 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLVR-HNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
gi|383752075|ref|YP_005427175.1| cell cycle ATPase MesJ [Rickettsia typhi str. TH1527]
gi|383842910|ref|YP_005423413.1| cell cycle ATPase MesJ [Rickettsia typhi str. B9991CWPP]
gi|61216485|sp|Q68XR8.1|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
gi|380758718|gb|AFE53953.1| cell cycle ATPase MesJ [Rickettsia typhi str. TH1527]
gi|380759557|gb|AFE54791.1| cell cycle ATPase MesJ [Rickettsia typhi str. B9991CWPP]
Length = 430
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 120/255 (47%), Gaps = 34/255 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAEKN---NIE-------LFIISVDHNLRAQSKQENYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+++ + + D + +LQ AR+ RY L +C++ + VLL AHH DD
Sbjct: 71 QSISNNLKRKYYNLS---FDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN--HSILLICQGGNR-DWVE 260
E F LRL RNSG+ GL+ SS I L N S L+ N+ W E
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNIHWYNNIQIIRPLYNIPKSELVKYLVTNKIKWFE 183
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSE--LQAVISACR-RTRSYVEHVCS----NLIN 313
D +N S + RN IR L FK E ++A IS + +T +E + I
Sbjct: 184 DESNLSDKYRRNIIRQKL-------FKEENYIKAEISVQQLKTNKLIEDELKPELISAIG 236
Query: 314 EAVTVMDQGYAVIDL 328
EAV + + G+ +DL
Sbjct: 237 EAVKIFEYGFTFLDL 251
>gi|398823073|ref|ZP_10581441.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. YR681]
gi|398226247|gb|EJN12501.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. YR681]
Length = 364
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A W+ ++ G + +TVDHGLR E+ EA V
Sbjct: 27 LVLAVSGGPDSVALMWLAARWR-----RSLARGPLLS---VVTVDHGLRPEAAREAREVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G+ +R W +PK G L AARD RYRL + + +L AH DDQ
Sbjct: 79 RLATGLGLTHRTLR--WRGAKPKTG-LPAAARDARYRLLARAARAARASHVLTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
AE ++R+ R SG+ GL+ M +++ A D K+ I + + G + +DPT
Sbjct: 136 AETLLMRMFRGSGLAGLSAMTRLTARDGIVLARPLLDVPKSQLIATLTRAGI-GFADDPT 194
Query: 264 NRSPLFVRNRIRMSLGDLSS 283
NR P F R R+R L L++
Sbjct: 195 NRDPAFTRPRLRALLPQLAA 214
>gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 400
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 126/280 (45%), Gaps = 18/280 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ L VSGGPDS+AL +L A W EA L +VDHGLR +S EA V
Sbjct: 84 KVLLAVSGGPDSVALMLLAAQW--------AEAVWKAPPLSVASVDHGLRPDSLAEAEQV 135
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV--LLIAHHA 201
+ + +G+ I+R W +PK LQE ARD RY L + IG L+ AHHA
Sbjct: 136 AEWAARLGLPHHILR--WEGEKPKT-RLQERARDARYGLL--IAHAETIGADYLVTAHHA 190
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE + RL R SG GL GM Q + +L IC + D
Sbjct: 191 DDQAETILFRLLRGSGPRGLKGMESLFQRGELLHARPLLGMTKAELLAICDTCRHPFFTD 250
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
P+N F R R+R +S ++ L + R + + + L
Sbjct: 251 PSNLDVRFARARLRRMERRFASAGLDRAALLRLGQRAARAEAVIAERAAALRASLPAERA 310
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 360
G+ +DL +++ + E+I L A +L + R+RP R
Sbjct: 311 PGFVQLDLALVS-REPEEILLRLIEAEILD-LTARERPPR 348
>gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
Length = 460
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L W E + L+A VDH LR ++S+E+ + V
Sbjct: 21 VVVGVSGGPDSLAL--LHFLW--------SERERYDIQLVAAHVDHMLRGKQSEEDMHFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H I CE + D + G +QEAARD RY F++V +H + +AHH D
Sbjct: 71 KHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHARCVALAHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+ S Y + I CQ DP
Sbjct: 131 DQIETVLMRLVRGSTTRGYAGIPVKRPFGSGYIVRPFLCIDRRQIEQYCQQNGLHARHDP 190
Query: 263 TNRSPLFVRNRIRMSL 278
+N + RNR R ++
Sbjct: 191 SNEKDDYTRNRFRHAV 206
>gi|383312045|ref|YP_005364846.1| cell cycle protein mesJ [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378930705|gb|AFC69214.1| cell cycle protein mesJ [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 535
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQ AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQARAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + N +W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-SHNIEWFEDES 186
Query: 264 NRSPLFVRNRIRMSLGD-------LSSCSFKSELQAVISACRRTRSY 303
N S + RN IR L LS +++ E + R T +Y
Sbjct: 187 NSSDKYRRNVIRQKLAKSADYIRHLSKPAYREEFKG--DTERSTAAY 231
>gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi]
gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi]
Length = 598
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 169/431 (39%), Gaps = 69/431 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA--- 140
++ + VSGG DSM +L W + G E ++A+ VDH +REES+ E
Sbjct: 121 KVGVAVSGGGDSMGTAILVKKWADYLKQKKGIDME----VVALIVDHQIREESEHEMLYV 176
Query: 141 -NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+++ V + C +C W D + KQ Q AR R + C+ +I +L+ H
Sbjct: 177 HEVLTKTVGYKNVFC--FQCLWPDNQKKQ---QRIARLKRQLIMSSECVSQKIDLLISGH 231
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD----------LKNHSILL 249
H D E I R++ +SG+ GL G+ Y+Y D + +
Sbjct: 232 HKQDNIETMIHRVAFSSGINGLNGIPL------IYSYCVADATIMLARPGLVFDCNELKA 285
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL-SSCSFKSELQAVISACRRTRSYVEHVC 308
+C N WVEDP N R+ IR LG L S S + R +
Sbjct: 286 VCTQYNIKWVEDPKNSDEREFRSIIRSRLGLLYQSGVSPSNFYNFLLTLGAIRHIMLRES 345
Query: 309 SNLINEAVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 367
N N V D+ G+A I L K + S L ++Q++ R+ PV + K +
Sbjct: 346 LNFYNRYVRFDDELGFAGIYFYSL--EKTAEFVASNALNSLIQYVTNREFPVTLGSIKNV 403
Query: 368 LHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSK---------------- 411
+ Y+ + T + GC L P K L GPL K
Sbjct: 404 VRYLPS----TKRSLGGCLLVP-----DKKVLYVIRDTGPLRRKKNHTTIRFTDKGIVWD 454
Query: 412 ----LELFQIHSDGEQRHCVTDVEQI-LEDAKSYSNHLIQDASDKLLLSMISDSVPTEAK 466
+++FQ + +T +++ LE Y N LI + K+ D+ P
Sbjct: 455 NRFFIQIFQYNKMNIPEENITYSKKLSLEKQPEYDNILIPNYDGKV------DTDPNGIY 508
Query: 467 RFNMLSESTYK 477
+ +E+ +K
Sbjct: 509 KIRPFTETDHK 519
>gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 482
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE R+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
E F LRL RNSG+ GL+ + QI +L + + N W
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSELVEYLV-----SHNIKWF 182
Query: 260 EDPTNRSPLFVRNRIRMSLG 279
ED +N S + RN IR L
Sbjct: 183 EDESNSSDKYRRNVIRQKLA 202
>gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110]
gi|61216753|sp|Q9XBG6.1|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum]
gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 101/209 (48%), Gaps = 15/209 (7%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLRE 134
A LK + L VSGGPDS+AL L A W+ G L +TVDHGLR
Sbjct: 19 AELKSAPALVLAVSGGPDSIALMWLAARWQR----------SLARGPRLTVVTVDHGLRA 68
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EA V +++G+ +R W +PK G L AAR+ RYRL +
Sbjct: 69 EAAREAREVKRLATELGLPHRTLR--WRGAKPKTG-LPAAAREARYRLLMQAARSAGASH 125
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+L AH DDQAE ++RL R SG+ GL+ MA ++ D+ ++ +
Sbjct: 126 VLTAHTRDDQAETLLMRLVRGSGLAGLSAMARLTERDGIVLARPLLDVPKAQLIATLKRA 185
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ +DPTNR F R R+R L L++
Sbjct: 186 KIGFADDPTNRDTAFTRPRLRALLPQLAA 214
>gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40]
Length = 1612
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 100/238 (42%), Gaps = 49/238 (20%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L VSGG DSMAL L+ W+ N + A VDH REES EAN V
Sbjct: 1036 RLGLAVSGGADSMALAYLSKQWEKSRPNDIS--------VTAFVVDHKAREESTREANTV 1087
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
S + D+G++ EI+ W + K + AR +R++ K C QI LL+ HH
Sbjct: 1088 SQWLQDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHH 1147
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQI------------FSSY----------AYSC 238
DD E + RL + GLAG+ ++I SSY A +
Sbjct: 1148 QDDTVETTLWRLCTGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQAR 1207
Query: 239 HD---------------DLKNHSILLICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGD 280
+D S+L C N +V DPTN P L RN IR L +
Sbjct: 1208 NDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLLAE 1265
>gi|431792140|ref|YP_007219045.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782366|gb|AGA67649.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 478
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
E + + + P RI + VSGGPDSMAL + W+ NQ+ E L+
Sbjct: 3 EKLKQHVLHKQIPPGSRILVAVSGGPDSMALAHIL--WRFMKENQHQEIS-----LVLTH 55
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYRLFQK 185
V HG+R+ES EE +V+ D I C I R D G K Q AAR+ RY +++
Sbjct: 56 VHHGVRKESDEEEKMVTRMARDWKIPCLIHRFD-SKGYAKSVGKSFQTAAREWRYARWEE 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--K 243
Q +L AHH DQAE + RL R SG GLAG I+ L
Sbjct: 115 DLQQENCSLLATAHHLGDQAETVLYRLLRGSGSAGLAG------IYPQKGKLIRPLLGVA 168
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
IL C+ N + D +N P++ RN+IR+ L
Sbjct: 169 KEEILQYCRSENLPYAIDCSNADPIYTRNKIRLEL 203
>gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
Length = 419
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 136/317 (42%), Gaps = 38/317 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P I + VSGG DS+AL L + A L TVDHGLR E+ EA
Sbjct: 17 PPKTIGVAVSGGSDSLALLHLL----------HDFAVTHSCTLHVATVDHGLRREAGAEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ +G+ E++ G + G+LQ AR RY+L + Q+ V+ + H
Sbjct: 67 AMVADTCRSLGLDHEVLHWQ---GWDRSGNLQNEARKARYQLLADWGRRRQLDVIALGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
ADDQAE F++RL+R +GV GL+ GM + + + + L+++ I
Sbjct: 124 ADDQAETFLMRLARRAGVDGLSAMPDRFEREGMTWIRPLLGARRAALQAYLESNGI---- 179
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSN 310
W +DP+N + R RIR +L L ++E L V + + H
Sbjct: 180 -----QWADDPSNEDTRYDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALNHQMQQ 234
Query: 311 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHY 370
V+ + G ID+ LN E + +A L+++ R + ++
Sbjct: 235 TARAYVS-LHAGAVAIDVAGLNAQPFE--IRRRLIAHALKWVNGAYYAPRSAALGDVMAA 291
Query: 371 IRTFPCKTSLTAAGCYL 387
+ T P S T GC L
Sbjct: 292 LATAP---SATLQGCEL 305
>gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 740
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 144/347 (41%), Gaps = 55/347 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DSMAL +L + G LLA+TVDH LR S EA V+
Sbjct: 14 IAVAVSGGADSMALMLLLREYLHGN--------RIKTPLLAVTVDHQLRIGSSREALEVA 65
Query: 145 HRVSDMGIRCEIVR-CDWLDG------------------RPKQGHLQEAARDMRYRLFQK 185
++ G + + C+W G +P+ ++E AR RY L ++
Sbjct: 66 KICAERGGITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRR 125
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA----------------FSSQ 229
VC+++ + L +AH+ DQ E + RL R SG+ GLAG+A
Sbjct: 126 VCLEYGVRCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKG 185
Query: 230 IFSSYAYSCHDDL---KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--- 283
+ S Y+ + L ++ C + W+ DP+N ++ R RIR L +
Sbjct: 186 LDSDYSATLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRVKREQG 245
Query: 284 ---CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIF 340
+ Q ++ + +E ++ + V+ L + + + +
Sbjct: 246 AEVLDLFARFQVSSDKAKKEFALIERA---MLRKYTVTWGPDLVVLRLAVFHDPNMFEEL 302
Query: 341 LSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYL 387
L + L++++ I ++ P R ++ L+ ++ +T GC +
Sbjct: 303 LYRLLSIIIVHIGTKETPPRLASVVRLVRDLQRLESGKQITLGGCRI 349
>gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H]
gi|61216387|sp|Q5FQB6.1|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H]
Length = 398
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L W+ ++A VDH LR ES EA +
Sbjct: 16 VGLAVSGGADSMALAFLARRWRRN--------------VVAFVVDHALRPESAAEAQLTV 61
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
HR++ M ++ ++ L PK G +QE AR R+ + C+ LL+AHHA DQ
Sbjct: 62 HRLAGMNVKARLLT---LAPFPK-GRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQ 117
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E +R SG LGL+G+ S + L Q N W+EDP+N
Sbjct: 118 DETVWMRHLHASGPLGLSGIQPVSVRGRIRLVRPLLTFPTARLRLTLQAENLPWIEDPSN 177
Query: 265 RSPLFVRNRIRMSL 278
+ F R R+R L
Sbjct: 178 ANRRFERVRLRQDL 191
>gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
Length = 341
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ +A + L +TVDHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALMWLVARWR--------KALKRGPSLSVVTVDHGLRAEAAREARAVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + +R W +P G +Q AAR RYRL + + ++ AH DDQ
Sbjct: 79 RLATSLDLPHRTLR--WRGDKPASG-IQAAARQARYRLLAEAARRAGATHIMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RLSR SG+ GLA M+ + D+ +L D+ DP+N
Sbjct: 136 AETVLMRLSRGSGIAGLAAMSRQTARDDIVLVRPLLDVPKARLLATLAKARIDFATDPSN 195
Query: 265 RSPLFVRNRIR 275
P F R R+R
Sbjct: 196 ADPRFARPRLR 206
>gi|345570748|gb|EGX53569.1| hypothetical protein AOL_s00006g435 [Arthrobotrys oligospora ATCC
24927]
Length = 619
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I + VSGG DSMAL L K F + +F A+ VDHGLR+ES +EA V
Sbjct: 46 QIGIAVSGGIDSMALAHLAH--KLSSFKNEFQVTDF----RAMIVDHGLRKESTKEAESV 99
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V MG+ ++ + HL + AR RYRLF + C Q+ I L+ HHA
Sbjct: 100 VEQVERMGLHASLLTIP-ISAFSSCSHLKVEGTARIERYRLFARTCQQYGISHLITGHHA 158
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFS-SYAYSCHDDLKNHSILLICQGGNR---- 256
+DQAE ++RL SG GLAG++ +++ Y D + L + + R
Sbjct: 159 NDQAETVLMRLVGGSGTAGLAGISPVAKLPECEDIYGADDIVVLRPFLGVFKNQLRKTLT 218
Query: 257 ----DWVEDPTNRS-PLFVRNRIRMSL 278
W EDPTN++ L RN IR L
Sbjct: 219 TEKISWHEDPTNKNVGLTPRNAIRALL 245
>gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
Length = 337
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 11/203 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
++ A K + L VSGGPDSMAL L A W++ A L+A+TVDHGL
Sbjct: 9 KLLFADWKGERALVLAVSGGPDSMALMWLAARWRS--------AMTRGPDLIAVTVDHGL 60
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S EA V + + +G+ +R W +P+ G L AAR RYRL + +
Sbjct: 61 RRGSAREARDVKNLATSLGVTHRTLR--WSGAKPESG-LPAAARAARYRLLARTARANGA 117
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+L AH DDQAE ++R+SR SG+ GL+ MA + ++ ++ +
Sbjct: 118 SHILTAHTRDDQAETVLMRISRGSGIAGLSAMARETMRDGFILARPFLNVPKSRLIATLK 177
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
D+VEDPTNR F R R+R
Sbjct: 178 KAKIDYVEDPTNRDLNFTRPRLR 200
>gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
Length = 434
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N+N + +TV+HGLR E+ +EA V
Sbjct: 20 AIAVSGGIDSMTLLHLSARY----CNKNTP--------IVLTVNHGLRPEAAQEALFVFQ 67
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY+L + C +++I L++AH +DQA
Sbjct: 68 HSQNLNLKCHIL--NW-HGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQA 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++RL R SG+ GLAGM + + +L N W+ D +N
Sbjct: 125 ETIMIRLERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNN 184
Query: 266 SPLFVRNRIRMSL 278
+ + R R L
Sbjct: 185 NKKYKRTLYRNML 197
>gi|414341362|ref|YP_006982883.1| hypothetical protein B932_0343 [Gluconobacter oxydans H24]
gi|411026697|gb|AFV99951.1| hypothetical protein B932_0343 [Gluconobacter oxydans H24]
Length = 412
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 120/288 (41%), Gaps = 30/288 (10%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + L VSGG DS+AL +L W+ +LA VDH LR ES EA
Sbjct: 31 PEAPVGLAVSGGGDSLALALLARRWRRH--------------VLAFVVDHALRPESGAEA 76
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R+ MGI+ ++ L PK G LQE ARD R+ + C++ LL+AHH
Sbjct: 77 YLTVERLEAMGIKARVLT---LAPFPK-GRLQERARDARFEALEAACVEAGCLDLLVAHH 132
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DQ E +R SG GLAGM ++ L + + W+E
Sbjct: 133 LHDQDETVWMRHHAGSGPRGLAGMEMTTLRGRIRIVRPCLTLHPDRLRATLRSEGLAWIE 192
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
DP+N++ F R R R DLSS + ISA S + + L AV
Sbjct: 193 DPSNQNRRFERVRWRQ---DLSSTQRDQAREWQISAQGLRHSEEDELARVLAKSAV---- 245
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLL 368
+ L P E + S AL+ +R RP R L+L
Sbjct: 246 --WHPAGWVHLAP---EGVCESTLPALIRLVSGRRYRPSREQVQALVL 288
>gi|433445447|ref|ZP_20409854.1| tRNA(Ile)-lysidine synthase [Anoxybacillus flavithermus TNO-09.006]
gi|432001095|gb|ELK21980.1| tRNA(Ile)-lysidine synthase [Anoxybacillus flavithermus TNO-09.006]
Length = 460
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 15/246 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L W E + L+A VDH LR ++S+E+ + V
Sbjct: 21 VVVGVSGGPDSLAL--LHFLW--------SERERYDIQLVAAHVDHMLRGKQSEEDMHFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H I CE + D + G +QEAARD RY F++V +H + +AHH D
Sbjct: 71 KHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHAHCVALAHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+ S Y + I C+ DP
Sbjct: 131 DQIETVLMRLVRGSTTRGYAGIPVKRPFGSGYIVRPFLCIDRRQIEQYCRQNGLHARHDP 190
Query: 263 TNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
+N + RNR R + + +Q +++E + + V
Sbjct: 191 SNEKDDYTRNRFRHFVLPFFKRENIRVHEHIQQFSEMMSEDEAFLEQLTKEELKRVVHQQ 250
Query: 320 DQGYAV 325
++G V
Sbjct: 251 EEGIHV 256
>gi|384157680|ref|YP_005539753.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
gi|384162473|ref|YP_005543852.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
Length = 472
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGKSSVI---IAAHVDHQFRGSESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFKDLMAKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGM----AFSSQIF-SSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM F+S + + Y+ D+ IL C+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGLLIRPFLYAAKDE-----ILEYCRQERL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 183 SYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 242
Query: 314 EAVT 317
+ +T
Sbjct: 243 KVIT 246
>gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
Length = 484
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 131/309 (42%), Gaps = 14/309 (4%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A A ++ + L VSGGPDSMAL L W T Q + TVDHGL
Sbjct: 44 RKAFASVEASPALVLAVSGGPDSMALMHLARRWATLASRQAAT-------ITVATVDHGL 96
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES EEA V +G E V W +P G A R L + +
Sbjct: 97 RPESAEEATFVKAHARALGF--EHVTLVWSGEKPSAGLQAAARRARYALLTAQARVNG-- 152
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
LL AH DDQAE I+RLSR SGV GL+ +A S + +
Sbjct: 153 ASLLTAHTRDDQAETLIMRLSRGSGVDGLSAIAPVSGRDGVRLVRPLLGFSKTRLTAYLR 212
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNL 311
+ +V DP+N + F R R+R+++ L++ K+ L + R+R+ ++
Sbjct: 213 ARHVPFVRDPSNENTAFERVRLRLAMKALANAGVSKAALALSAARLGRSRAALDEAAERF 272
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
++ V + ID E + + D + LA VL + R P R + LL +
Sbjct: 273 LDGFFRVSPLAHGEIDREAFD--ALPDEIALRVLARVLPLVGGRAEPPRMMRLERLLENL 330
Query: 372 RTFPCKTSL 380
R+ + +L
Sbjct: 331 RSRNSEATL 339
>gi|338983439|ref|ZP_08632634.1| tRNA(Ile)-lysidine synthetase [Acidiphilium sp. PM]
gi|338207650|gb|EGO95592.1| tRNA(Ile)-lysidine synthetase [Acidiphilium sp. PM]
Length = 274
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 118/265 (44%), Gaps = 49/265 (18%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 1 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 50
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 51 RPESADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 106
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL--- 249
LL+ HHA DQ EL +R +R G GLAGMA ++ DD+ LL
Sbjct: 107 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDDIVILRPLLGTD 155
Query: 250 ------ICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTR 301
G WVEDP+N F R R+R + L S ++ R
Sbjct: 156 PAVLRQFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDAD----------RR 205
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVI 326
+ E + + + V++ +G+A++
Sbjct: 206 AAAERDVAATLAQNVSLRPEGWAIV 230
>gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
gi|384166695|ref|YP_005548073.1| hypothetical protein BAXH7_00072 [Bacillus amyloliquefaciens XH7]
gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
gi|341825974|gb|AEK87225.1| hypothetical protein BAXH7_00072 [Bacillus amyloliquefaciens XH7]
Length = 486
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGKSSVI---IAAHVDHQFRGSESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFKDLMAKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGM----AFSSQIF-SSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM F+S + + Y+ D+ IL C+
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGLLIRPFLYAAKDE-----ILEYCRQERL 196
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 197 SYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 256
Query: 314 EAVT 317
+ +T
Sbjct: 257 KVIT 260
>gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
gi|61216401|sp|Q5LNU7.1|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
Length = 419
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P R+ + VSGG DS+AL L A + GE L TVDHGLR ES E
Sbjct: 21 QPPRRLGVAVSGGGDSVALMHLLA--------RCFPRGEVK--LCVATVDHGLRSESASE 70
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A +V+ + + +G+ E + G +G+LQ+ AR RY L +++++ + +AH
Sbjct: 71 AALVARQAAGLGLPHETLLWT---GWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAH 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMA---------FSSQIFSSYAYSCHDDLKNHSILLI 250
ADDQAE ++RL R++GV GLA MA + + D L+ I
Sbjct: 128 TADDQAETLLMRLGRSAGVSGLAAMAPRRMQDGVVLVRPLLGITRDALRDFLRAEGIA-- 185
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
W EDP+N + R + R +L L+ ++ A ++A
Sbjct: 186 -------WAEDPSNEDIRYDRIKARQALAGLAPMGIDAQRLAEVAA 224
>gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
Length = 442
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N+N + +TV+HGLR E+ +EA V
Sbjct: 28 AIAVSGGIDSMTLLHLSARY----CNKNTP--------IVLTVNHGLRPEAAQEALFVFQ 75
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY+L + C +++I L++AH +DQA
Sbjct: 76 HSQNLNLKCHIL--NW-HGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++RL R SG+ GLAGM + + +L N W+ D +N
Sbjct: 133 ETIMIRLERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNN 192
Query: 266 SPLFVRNRIRMSL 278
+ + R R L
Sbjct: 193 NKKYKRTLYRNML 205
>gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
Length = 417
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 99/225 (44%), Gaps = 34/225 (15%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI + +SGG DSMAL L A W Q+G L A +VDHGLR E+ +E +
Sbjct: 23 RRIGVAMSGGGDSMALLHLLADWAA----QSGAE------LRAASVDHGLRPEAADEIAL 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + +GI + + D G+LQ AARD RYRL V+ + H D
Sbjct: 73 AAKTCAALGIPHDSLTWD----EAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQD 128
Query: 203 DQAELFILRLSRNSGVLGLAGM---------AFSSQIFSSYAYSCHDDLKNHSILLICQG 253
DQAE +LRL R SGV GLA M + + + + DL +
Sbjct: 129 DQAETVLLRLLRGSGVDGLAAMRPRTLRAGTVWLRPLLAVSRAALRADLTARGVA----- 183
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLG--DLSSCSFKSELQAVISA 296
W EDP+N F R R+R ++ DL QA+ A
Sbjct: 184 ----WAEDPSNADLRFDRVRVRQAMAALDLPVARLADTAQAMARA 224
>gi|340028029|ref|ZP_08664092.1| tRNA(Ile)-lysidine synthetase [Paracoccus sp. TRP]
Length = 411
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 131/316 (41%), Gaps = 36/316 (11%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H I + +SGG DSMAL L GW L A TVDHGLR S +EA
Sbjct: 23 HQAIGIALSGGGDSMALMHLAHGWGR-------------RPLFAATVDHGLRAASADEAQ 69
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ +GI E + W G G+L AAR+ R RL + + +L+ H
Sbjct: 70 QAGLAAASLGISHETLH--WTYG--GDGNLMAAAREGRLRLLSDWARRRGLSAVLLGHTL 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++RL+R +GV GL+ MA + + ++ + +G W +D
Sbjct: 126 NDQAETLLMRLNRGAGVDGLSAMAPAREAMGVTWLRPLLEVSRADLRQWLRGRGISWADD 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 321
P+N + + R R+R ++ + L I R+ + + L + A + +
Sbjct: 186 PSNENEDYERVRVRKAI---------AALDLPIRQIARSAANLSMAREALCDFAARLSEG 236
Query: 322 GYA-----VIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPC 376
++ + L+ + +E + L L+F+ P RG +LH +
Sbjct: 237 AFSRAGSLALPLDAFRGAPVE--IRRRLLVAGLRFVSGAAYPPRGEP---VLHALEALAD 291
Query: 377 KTSLTAAGCYLCPTPG 392
LT G L P G
Sbjct: 292 GARLTLDGVILQPRDG 307
>gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
Length = 332
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANIVSHR 146
+SGGPDS A+ VL W+ G +DG TVDHGLR E+ +EA V
Sbjct: 1 MSGGPDSTAMLVLARIWRYG----------LLDGPSFFVATVDHGLRPEATDEALAVGAL 50
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
++G+ I+ W +P+ G +QEAARD R+ L + Q+ + L +AH DDQAE
Sbjct: 51 CEELGLPHVIL--PWRGPKPRSG-IQEAARDERFALLRSFARQNGLDGLALAHTQDDQAE 107
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
+ RL R SG+ GLA M S+ + ++ +V DP+N
Sbjct: 108 TVLFRLCRGSGIGGLAAMRPVSRRNGLAVLRPFLSIAKARLVATLAVSGTPFVRDPSNED 167
Query: 267 PLFVRNRIR 275
+ R R+R
Sbjct: 168 TRYARPRLR 176
>gi|154684586|ref|YP_001419747.1| hypothetical protein RBAM_000780 [Bacillus amyloliquefaciens FZB42]
gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42]
Length = 472
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM S + + Y+ D+ IL C+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAAKDE-----ILEYCRQEGL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 183 SYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 242
Query: 314 EAVT 317
+ +T
Sbjct: 243 KVIT 246
>gi|429503601|ref|YP_007184785.1| hypothetical protein B938_00350 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485191|gb|AFZ89115.1| hypothetical protein B938_00350 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 472
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM S + + Y+ D+ IL C+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAAKDE-----ILEYCRQEGL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 183 SYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 242
Query: 314 EAVT 317
+ +T
Sbjct: 243 KVIT 246
>gi|384263698|ref|YP_005419405.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896594|ref|YP_006326890.1| cell cycle protein [Bacillus amyloliquefaciens Y2]
gi|380497051|emb|CCG48089.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387170704|gb|AFJ60165.1| cell cycle protein [Bacillus amyloliquefaciens Y2]
Length = 486
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM S + + Y+ D+ IL C+
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYTAKDE-----ILEYCRQEGL 196
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 197 SYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 256
Query: 314 EAVT 317
+ +T
Sbjct: 257 KVIT 260
>gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
Length = 390
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 118/265 (44%), Gaps = 49/265 (18%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 2 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 51
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 52 RPESADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 107
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL--- 249
LL+ HHA DQ EL +R +R G GLAGMA ++ DD+ LL
Sbjct: 108 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDDIVILRPLLGTD 156
Query: 250 ------ICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTR 301
G WVEDP+N F R R+R + L S ++ +A R
Sbjct: 157 PAVLREFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDADRRAAAE-----R 211
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVI 326
E + N V++ +G+A++
Sbjct: 212 DVAETLARN-----VSLRPEGWAIV 231
>gi|394994201|ref|ZP_10386929.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 916]
gi|393804977|gb|EJD66368.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 916]
Length = 472
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM S + + Y+ D+ IL C+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAAKDE-----ILEYCRQEGL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 183 SYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYLQALTKERMN 242
Query: 314 EAVT 317
+ +T
Sbjct: 243 KVIT 246
>gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
Length = 422
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 127/275 (46%), Gaps = 43/275 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKEEANI 142
+ L VSGG DSMAL L GL A+TVDHGLR ES EA
Sbjct: 33 LGLAVSGGGDSMALLHLA----------------VAAGLPCRAVTVDHGLRAESAAEAAG 76
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ + + + + +R DGR G+LQ+ AR RY L + + H I + + H+ D
Sbjct: 77 VARACAALAVPHDTLRWQGWDGR---GNLQDQARRARYALIAEWALAHGIAAVALGHNRD 133
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN-HSILLICQGGNRD---- 257
D AE +LRL+R +GV GLA MA A H + +L I +G RD
Sbjct: 134 DVAETLLLRLARGAGVDGLAAMA---------ARRRHQGVNWLRPLLEIGRGELRDWLAG 184
Query: 258 ----WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLI 312
WV+DP+N + F R R+R + G L++ +E L V + R+ +E V +
Sbjct: 185 RGVVWVDDPSNDNARFDRVRLRQAAGTLAALGLTTERLAEVAGHLAQVRAALE-VQTRDA 243
Query: 313 NEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKFL 345
++ G VID L+ P +I L+ L
Sbjct: 244 ARKYARIEAGDVVIDPAALHDLPEEIARRLLASAL 278
>gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
gi|259533753|sp|C3PM75.1|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
Length = 478
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E F LRL RNSG+ GL+ + ++ K+ + + + N W ED +
Sbjct: 128 YVENFCLRLERNSGIFGLSSSNINWYNNIQIIRPLYNIPKSKLVEYLVR-HNIKWFEDES 186
Query: 264 NRSPLFVRNRIRMSLG 279
N S + RN IR L
Sbjct: 187 NSSDKYRRNVIRQKLA 202
>gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
Length = 475
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 18/221 (8%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
LTDM KYR + ++ G RI VSGGPDSMAL L W+ Q
Sbjct: 9 LTDMMKYRA--TEQLWSKG----DRIVAAVSGGPDSMALLHLL--WQAARQEQLT----- 55
Query: 120 IDGLLAITVDHGLREE-SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARD 177
++A V+HG R++ S++EA +V +G+ E++ D + G + Q AAR+
Sbjct: 56 ---VIAAHVNHGFRKDASRQEAEVVRQYAEKLGVPFEMIELDMPAYIEETGINAQSAARE 112
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY + +++ + +AHHADDQAE ++R+ R +G+ GLAGMA + +
Sbjct: 113 KRYAFLHETAVKYGASAIALAHHADDQAETVLMRVIRGAGLTGLAGMAPKRKEKNVELIR 172
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ I+ C + + D +N + RN +R+ +
Sbjct: 173 PLLRMNKSDIVRYCSERDVPYCLDSSNNERYYFRNVVRLDV 213
>gi|453330638|dbj|GAC87384.1| cell cycle protein MesJ [Gluconobacter thailandicus NBRC 3255]
Length = 412
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 103/236 (43%), Gaps = 21/236 (8%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + L VSGG DS+AL +L W+ +LA VDH LR ES EA
Sbjct: 31 PEAPVGLAVSGGGDSLALALLARRWRRH--------------VLAFVVDHALRPESGAEA 76
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R+ MGI+ ++ L PK G LQE ARD R+ + C++ LL+AHH
Sbjct: 77 YLTVERLEAMGIKARVLT---LAPFPK-GRLQERARDARFEALEAACVEAGCLDLLVAHH 132
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DQ E +R SG GLAGM ++ L + + W+E
Sbjct: 133 LHDQDETVWMRHHAGSGPRGLAGMEMTTLRGRIRIVRPCLTLHPDRLRATLRSEGLAWIE 192
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
DP+N++ F R R R DLSS + ISA S + + L AV
Sbjct: 193 DPSNQNRRFERVRWRQ---DLSSTQRDQAREWQISAQGLRHSEEDELARVLAKSAV 245
>gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 167
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 13/143 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+P R+A+ VSGG DS+A +L A W E L+A+TVDH LR S
Sbjct: 19 FEPRPRLAVAVSGGADSLAATLLAAHW----------VHERRGTLVALTVDHRLRPNSTA 68
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V +++ GI I+ WL +P +Q AR RY L ++ C Q I LL+A
Sbjct: 69 EAVLVGQWLANHGIEHHIL--PWLGDKPVSD-IQGRARAARYGLLEQYCRQAGILHLLLA 125
Query: 199 HHADDQAELFILRLSRNSGVLGL 221
HH DDQAE F+LRL+R SGV GL
Sbjct: 126 HHRDDQAETFLLRLARGSGVDGL 148
>gi|421859844|ref|ZP_16292034.1| predicted ATPase [Paenibacillus popilliae ATCC 14706]
gi|410830605|dbj|GAC42471.1| predicted ATPase [Paenibacillus popilliae ATCC 14706]
Length = 525
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 27/295 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGGPDSM L A G E ++ V HG R +ES EEA
Sbjct: 38 RIVIAVSGGPDSMLLLHAIAA--LIGHQPGSER------MIIAHVHHGFRPQESDEEARF 89
Query: 143 VSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V +GIR + R D W + + Q AAR +RY ++V + Q V+ +AH
Sbjct: 90 VEREAERLGIRLAMERVDAPGW--AVEHKMNAQAAARQLRYDFLKEVAAREQASVIALAH 147
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
HADDQAE ++RL R +G GL+GMA++ + ++ ++ C+ +V
Sbjct: 148 HADDQAETVLMRLLRGTGSTGLSGMAWNREADGFSFVRPLLGVRKAELVEWCRLRGIAYV 207
Query: 260 EDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
D +N ++RNR+R+ + + + + L R ++E
Sbjct: 208 TDSSNAKTDYLRNRVRLDVMPRLEQENPGLVASLCRTADVLREENDWMEEQARQWFQRVA 267
Query: 317 TVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
++ G V + +PS ++ + L + L + QR+ KL+L+Y+
Sbjct: 268 RIVKDGEGV---PMESPS-LDGVVLDRRALLQVHVALQRR------LIKLILNYL 312
>gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
Length = 462
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 23/302 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P+ + +GVSGGPDS+AL L W E+ L+A VDH R ++S+
Sbjct: 15 LTPNSTVIVGVSGGPDSLAL--LHFFWSI--------RQEWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H + GI CE V+ D K G +QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCAARGIICEAVQMDVPAFQRESKLG-VQEAARQCRYRFFGELMKKYKAHYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+ HH DDQ E ++RL R S G AG+ + Y + I C+
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPAKRPFYGGYIIRPFLAISRADIDAYCRQHQ 183
Query: 256 RDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 312
D +N + RNR R + + Q+ ++E + + +
Sbjct: 184 ITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMVMEDELFLEELAKDAM 243
Query: 313 NEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIR 372
N+ VM++ + + L+I + + + L+L ++ + + S S + +H I
Sbjct: 244 NK---VMEKQHDTVALKIEPFQAMPKPLQRRGIQLILNYLY---KDIPSSLSSVHIHNIF 297
Query: 373 TF 374
TF
Sbjct: 298 TF 299
>gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris CGA009]
gi|61216538|sp|Q6NAQ6.1|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009]
Length = 346
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
TD +RR+ A K I L VSGGPDS+AL L A W+ + G A
Sbjct: 4 TDHEAVSATEARRL-FADWKAAPAIVLAVSGGPDSLALMWLAARWRKA--LKRGPA---- 56
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR E+ EA V + + + +R W +P G +Q AAR RY
Sbjct: 57 --LAVVTVDHGLRPEAAAEARAVKRLAASLDLPHRTLR--WSGDKPSTG-IQAAARGARY 111
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
RL K ++ AH DDQAE ++RLSR SG+ GLA MA +
Sbjct: 112 RLLAKAAKTLGASHVMTAHTRDDQAETVLMRLSRGSGIAGLAAMAREIERDGVVLARPLL 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--CSFKS 288
D+ ++ + DP+N P F R R+R + L++ C +S
Sbjct: 172 DVPKARLIATLAKARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARS 221
>gi|385267094|ref|ZP_10045181.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 5B6]
gi|385151590|gb|EIF15527.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 5B6]
Length = 486
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNRLNKQAAARDCRYQFFEDLMAKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM S + + Y+ D+ IL C+
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVRELASGWLIRPFLYAAKDE-----ILEYCRQEGL 196
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 197 SYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 256
Query: 314 EAVT 317
+ +T
Sbjct: 257 KVIT 260
>gi|357385481|ref|YP_004900205.1| tRNA(Ile)-lysidine synthetase [Pelagibacterium halotolerans B2]
gi|351594118|gb|AEQ52455.1| tRNA(Ile)-lysidine synthetase [Pelagibacterium halotolerans B2]
Length = 437
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 117/270 (43%), Gaps = 31/270 (11%)
Query: 74 MAMAGLKPH---------HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
MA+ GL PH + L VSGG DS+AL +L A W +G+ +
Sbjct: 7 MALCGLDPHALFAPVANCQTVGLAVSGGADSLALMLLYAAW-------SGDRPRAV---- 55
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
TVDH LR E++ EA +V G+ C + W +P G Q AAR RYRL
Sbjct: 56 VYTVDHRLRPEAQAEAAMVVAEAEKPGLTCRSLV--WDGPKPSSGK-QSAARSARYRLMA 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
K VL+ AHH DQAE ++RL+ SGV GLAGM S + + +
Sbjct: 113 KAMAADGAEVLVTAHHLRDQAETVLMRLAHGSGVTGLAGMRDFSVVEGVEVFRPLLGVPA 172
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-------KSELQAVISAC 297
++ + V DP+N P + R R R +L L E A I A
Sbjct: 173 ETLATLVARAGLSPVHDPSNADPAYERTRWRNALPALGELGLTPAILGKAGERMARIDAF 232
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVID 327
R+ E +++ +A+ V+ A +D
Sbjct: 233 -AARAADEFAEAHMTRDALGVLRIARAALD 261
>gi|340777302|ref|ZP_08697245.1| Ile-tRNA lysidine synthase TilS [Acetobacter aceti NBRC 14818]
Length = 346
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 119/250 (47%), Gaps = 38/250 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+AL VSGG DS+AL L A W+ L+A VDHGLR E +EA
Sbjct: 44 VALAVSGGGDSIALAWLAASWRKR--------------LIAFVVDHGLRPEFAQEAASAL 89
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+S++GI E++R L P L + ARD RY + + C + LL+AH ADDQ
Sbjct: 90 KTLSELGIPAELLRVRDL---PYGPALAKRARDARYEVLIEACRRVGAVDLLVAHQADDQ 146
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQ------IFSSYAYSCHDDLKNHSILLICQGGNRDW 258
E +R R SG GL+GMA+ S+ I YS + L+N + Q G W
Sbjct: 147 VETVGMRQRRGSGT-GLSGMAWVSERADVRIIRPLLGYS-RETLRNT----LRQAG-LGW 199
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL--QAVISACRRTRSYVEHVCSNLINEAV 316
+DP+N + R R+R L S + K L QA ++A R R E ++ + E
Sbjct: 200 CDDPSNENERAERVRVRKQL----SPTEKQALLRQAEMAADERVRQ--ERAITHDLVETQ 253
Query: 317 TVMDQGYAVI 326
+M G+ +
Sbjct: 254 CLMSGGWVAL 263
>gi|421729437|ref|ZP_16168569.1| YacA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407076681|gb|EKE49662.1| YacA [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 472
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLTLAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL++ + GLAGM + S + + IL C+ + D
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAEKDEILEYCRQEGLSYRTD 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A Y++ + +N+ +T
Sbjct: 188 ESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMNKVIT 246
>gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
Length = 430
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 125/306 (40%), Gaps = 22/306 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANI 142
++ + VSGG DS+AL + A D LA+ TVDHGLR ES+ EA
Sbjct: 24 KLGVAVSGGSDSVALMHVLA-----------TMARAEDTALAVATVDHGLRPESRREAEF 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ + D+G+ + + P G+LQ AR RYRL +G + + H A
Sbjct: 73 VAQQAHDLGLSHQTLTWQ----HPADSGNLQAEARAARYRLLGDWARTQGLGAVAVGHTA 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE ++RL R SGV GL GM DL+ + + W+ED
Sbjct: 129 DDQAETVLMRLRRASGVAGLCGMPTCHHRDGIDVLRPMLDLRRSDLRAYLTARDVAWIED 188
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 321
P+N F R RIR +L L + ++ R + + ++ +
Sbjct: 189 PSNLDMKFERVRIRDALNALEPLGLTVDALTAVADNMRMANRALDSATRTAAASIGQIRL 248
Query: 322 GYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLT 381
G V+D N ++E + L L P R + +L ++ T
Sbjct: 249 GMVVLDCAGFN--RLETEIARRLLVSALLHTNGAAYPPRRAP---VLDALKALKEGRGAT 303
Query: 382 AAGCYL 387
GC++
Sbjct: 304 LQGCHI 309
>gi|402224103|gb|EJU04166.1| hypothetical protein DACRYDRAFT_114565 [Dacryopinax sp. DJM-731
SS1]
Length = 520
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+ L L +N+ G I+G IT+DHG R E+ +EA V
Sbjct: 29 LTVAVSGGADSIGLLWLL----RSLYNEAGITEPRING---ITIDHGFRPETAKEAEAVG 81
Query: 145 HRVSDMGIRCEIVRCDW----LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
D+G+ +I++ W P+ + + R RY + + LL H
Sbjct: 82 AFCRDIGVEHQIIKVPWGTNSYPNHPEPAQYESSGRWARYWILFHAMQESGSHALLTGHQ 141
Query: 201 ADDQAELFILRLSRNSGVLGLAGM---------------AFSSQIFSSYAYSCHDDL--K 243
A+DQ E I+R R SGVLG+ GM F + +A+ C L
Sbjct: 142 ANDQLETAIMRAERESGVLGMLGMRPIRRYGMGGPAPWLNFGEKGL--HAFMCRPILTFS 199
Query: 244 NHSILLICQGGNRDWVEDPTN-RSPLFVRNRIRMSLGDLSS 283
+ CQ N W EDP+N + L VRNRIR +L + S
Sbjct: 200 KERLKATCQASNIPWTEDPSNLDTNLTVRNRIRATLDQIQS 240
>gi|337287184|ref|YP_004626657.1| tRNA(Ile)-lysidine synthetase [Thermodesulfatator indicus DSM
15286]
gi|335360012|gb|AEH45693.1| tRNA(Ile)-lysidine synthetase [Thermodesulfatator indicus DSM
15286]
Length = 456
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 26/200 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L VSGGPDSMAL + K E L DH LR+ES +EA
Sbjct: 22 ERVLLAVSGGPDSMALLHVLLALKD----------ELELDLFVAYYDHRLRKESLKEALF 71
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V +G+ + L + ++ L+ A R++RYR F+++ ++++ + +AH A
Sbjct: 72 VKSYAEKLGLPFILAAAPVKLYAKREKISLEAAGRELRYRFFERIAEEYELNRVALAHQA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMA------FSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
DD AE +LR R +G GLAG+ F + D LK +I
Sbjct: 132 DDLAEEVLLRFIRGAGRRGLAGIPVKRGGIFIRPLLMVSREEIEDFLKKENI-------- 183
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
++EDP+N P F+RNR+R
Sbjct: 184 -PYIEDPSNEDPRFLRNRVR 202
>gi|384920063|ref|ZP_10020082.1| tRNA(Ile)-lysidine synthetase-like protein [Citreicella sp. 357]
gi|384466083|gb|EIE50609.1| tRNA(Ile)-lysidine synthetase-like protein [Citreicella sp. 357]
Length = 422
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 142/344 (41%), Gaps = 51/344 (14%)
Query: 63 MTKYREAFSRRMAMAGLKPH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
MT + F+ M A L P IAL VSGG DSMA+ L W +
Sbjct: 1 MTSLDQRFADAMG-AALGPDFPRDIALAVSGGGDSMAMLTLAHNWSH----------RWG 49
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR ES E ++V +++G + W QG+L +AAR R
Sbjct: 50 VSLHVVTVDHGLRPESPAEVDLVKATCAELGHPHTDLSWRW----NGQGNLMDAARRGRL 105
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +++ LL AH DD AE F++RL+R SGV GLA MA ++ D
Sbjct: 106 AVIGDWLARNR--PLLQAHTRDDVAETFLMRLARGSGVDGLAAMAAVREV-------ARD 156
Query: 241 DLKNHSILLICQGGNRD------------WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
D +I+ C G R+ W EDP+N + R RIR L L +
Sbjct: 157 DGTQFTIVRPCLGMGREELRHYLRTLKGTWAEDPSNADDSYERARIRKLLPTLKAHGLDP 216
Query: 289 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ-----GYAVIDLEILNPSKIEDIFLSK 343
E +SA R S EA G +D + ++IE +
Sbjct: 217 E---TLSATARRMSRAGEALRLRAAEAWDACGSEECALGTLTLDRDAF--ARIERDTQLR 271
Query: 344 FLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYL 387
LA L+F+ + + R + + LL + S T GC L
Sbjct: 272 VLAAALRFVSRAEYRPRAAALETLLDRLH---AGGSGTLHGCEL 312
>gi|357030737|ref|ZP_09092681.1| hypothetical protein GMO_03810 [Gluconobacter morbifer G707]
gi|356415431|gb|EHH69074.1| hypothetical protein GMO_03810 [Gluconobacter morbifer G707]
Length = 393
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 112/265 (42%), Gaps = 40/265 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L W+ ++A VDH LR S EEA +
Sbjct: 16 VGLAVSGGGDSMALAWLARRWRRH--------------VVAFVVDHALRASSAEEARLTV 61
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ +GIR ++ LD P G +QE AR+ R+ ++ C+Q LL+AHHA DQ
Sbjct: 62 ARLEALGIRARLLT---LDAFPA-GRMQERAREARFAALEQACVQEGCLDLLVAHHAHDQ 117
Query: 205 AELFILRLSRNSGVLGLAGMAFSS---------QIFSSYAYSCHDDLKNHSILLICQGGN 255
E +R S LGL GMA ++ + S L+ H +
Sbjct: 118 DETVWMRCEGGSTPLGLIGMASAAIRGRLRLVRPLLSLAPERLRATLRAHDV-------- 169
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
W+EDP+N + F R R R L + +S + + R R + V + L+
Sbjct: 170 -SWIEDPSNLNRRFERVRWRQDLTERQRIDGRSLREEAV----RFRREHDVVLAKLLANH 224
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIF 340
G+ + E + P + +
Sbjct: 225 ARWHPAGWIFLSEEGMVPKALAPLI 249
>gi|375360758|ref|YP_005128797.1| YacA [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|371566752|emb|CCF03602.1| YacA [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
Length = 486
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL++ + GLAGM + S + + IL C+ + D
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAEKDEILEYCRQEGLSYRTD 201
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A Y++ + +N+ +T
Sbjct: 202 ESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMNKVIT 260
>gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
Length = 476
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 17/256 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + EA ++ VDH R +ES
Sbjct: 19 LEEHSTIVVGVSGGPDSLALLYYLL--------EKREAKNLT--IVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + ++GI CE +R + L + + G + Q AAR+ RY +++ ++ G +
Sbjct: 69 EDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLERIMRKYDAGYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLIC-QGGN 255
+ HH DDQ E ++RL R S G AG+A + Y + IL C Q G
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPQGYAGIAVKRPFHNGYLIRPLLAVTKEEILDYCDQLGI 188
Query: 256 RDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 312
+ D +N+ ++ RNR+R + + Q + +Y++ + +
Sbjct: 189 MPRI-DSSNKKEVYTRNRLRKYVLPYLKEENPQVHEHFQKFSQLMQEDEAYLQELAFEKM 247
Query: 313 NEAVTVMDQGYAVIDL 328
N+ +T Y V+ +
Sbjct: 248 NKVITKKSDKYLVLSI 263
>gi|452854130|ref|YP_007495813.1| tRNAile lysidine synthetase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452078390|emb|CCP20140.1| tRNAile lysidine synthetase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 472
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY-----AYSCHDDLKNHSILLICQGGNR 256
DDQ E ++RL++ + GLAGM + S + Y+ D+ IL C+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPLLYAAKDE-----ILEYCRQEGL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ D +N + RNR R ++ S Q V A Y++ + +N
Sbjct: 183 SYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYLQSLTKERMN 242
Query: 314 EAVT 317
+ +T
Sbjct: 243 KVIT 246
>gi|344300177|gb|EGW30517.1| hypothetical protein SPAPADRAFT_157650 [Spathaspora passalidarum
NRRL Y-27907]
Length = 486
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 20/210 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ +SGG DSM L L +K + + E + AIT+DH R ES +E +
Sbjct: 26 RVAIALSGGADSMLLTYLLTQYK----HLHSPHTE----IYAITIDHKYRPESTDETKHI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
V + + + G+ +E AR RY F+ VC QI L + HH DD
Sbjct: 78 RDIVKQWDVHHVVKTLSYDQEVSSIGNFEEVARHKRYLKFENVCKSKQISALFMGHHLDD 137
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQI-----------FSSYAYSCHDDLKNHSILLICQ 252
Q E FI RL NS + GLAG +++ S + Y + I+ CQ
Sbjct: 138 QLETFIQRLQGNSSLYGLAGTRKITRLPRNDLSPIDNHHSVFVYRPFWQFEKRDIVDTCQ 197
Query: 253 GGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 281
+ DPTN+ L RN +R +GD+
Sbjct: 198 FNGVRYFNDPTNQDIDLTRRNYLRHLIGDV 227
>gi|374578803|ref|ZP_09651897.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus youngiae DSM
17734]
gi|374414885|gb|EHQ87320.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus youngiae DSM
17734]
Length = 470
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 144/331 (43%), Gaps = 32/331 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGGPDSMAL L W+ + Q E+ + +L V HG+R ES EA +V
Sbjct: 19 RVMVAVSGGPDSMALSHLL--WR---YTQE-ESSRGVSIVLT-HVHHGVRRESDAEAVMV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ C + R + G QEAAR+ RY +++ ++ +L AHH
Sbjct: 72 QDMAKKWNVPCLVHRFNAKRYAESMGQSFQEAAREWRYARWKEDMLKEGCSLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFS--SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DQAE + RL R SG GLAGM S S I +++ D IL C +
Sbjct: 132 DQAETILYRLLRGSGTAGLAGMYPSKGSIIRPLLSFTKAD------ILNYCAREAVPYAL 185
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC----RRTRSYVEHVCSNLINEAV 316
D +N+ P++VRNRIR+ L S+ S +Q + R Y+ ++
Sbjct: 186 DDSNQEPVYVRNRIRLELLPELERSYNSRIQETLGRTGELLRWDEEYITRQVKAAWDQYH 245
Query: 317 TVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH------ 369
QG + L++ P+ I LS+ L + Q R + + +++
Sbjct: 246 YQDSQGTICLKLDVFKEPAAI----LSRLLRKAAMQVTQEPRGLGFTYVAMIMAAQGKPG 301
Query: 370 YIRTFP-CKTSLTAAGCYLCPTPGSRGTKAL 399
+ + P + LT G C + G KAL
Sbjct: 302 WSQDLPGMRVKLTDEGLQFCRSHIDAGQKAL 332
>gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
Length = 392
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 43/313 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANIV 143
+ L VSGG DS+AL L A I G +++ +VDHGLR ES E +V
Sbjct: 16 VGLAVSGGGDSIALLHLAAA---------------IGGRISVASVDHGLRPESAAECGMV 60
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + G+ + ++ W G ++G+LQ+ AR RY L + + + H ADD
Sbjct: 61 ADICTSYGLPHQTLK--W-TGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADD 117
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ---------GG 254
QAE ++ L+R +GV GLAGMA A D L H LL
Sbjct: 118 QAETIVMALARGAGVGGLAGMA---------AVMSRDGLHYHRPLLQVTRVALRAYLVAT 168
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINE 314
R W +DP+N P + R RIR + L+ S+ ++ T + + +
Sbjct: 169 GRVWCDDPSNDDPAYERIRIRQAADTLAELGLTSQTLGQVAQHMATATEALDRGTADLAA 228
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
AV + G +I L + + S+ + + + ++ + +R P R + L+H +
Sbjct: 229 AVMMPQSGDVLIMLALRDLSREQ---ARRLVLAAMERVHRRITPPRKDEQQRLMHALLQ- 284
Query: 375 PCKTSLTAAGCYL 387
+T GC +
Sbjct: 285 --GQGVTLGGCLM 295
>gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
2831]
gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
2831]
Length = 345
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A + + G + L TVDHGLR ES EA V
Sbjct: 3 LAVSGGPDSSALMHAAARLR----DATGAS------LRVATVDHGLRSESGAEAEAVGRA 52
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+G+ I+ W +P G LQ+AAR RY L G++L H DDQAE
Sbjct: 53 ARALGLPHAIL--TWAGAKPGTG-LQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAE 109
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYS---CHDDLKNHSILLICQGGNRDWVEDPT 263
++RL+ SG GLAGM + A H L S++ C + DP
Sbjct: 110 TVLIRLAAGSGPAGLAGMRAERDLGPGLALGRPFLH--LPKASLVAWCAARGIAYARDPA 167
Query: 264 NRSPLFVRNRIRMS 277
N P F R R+R +
Sbjct: 168 NGDPRFARGRLRAA 181
>gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4]
gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4]
Length = 454
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A T+DHGLR+ S EA V+ + +GI EI R W +PK G + AAR RY+L
Sbjct: 78 LHAATIDHGLRDGSAAEAETVAALCATLGIPHEIRR--WTGDKPKTG-ISAAARAARYQL 134
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILR--LSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ + +L H ADDQ E +R SRN GLAGMA S +F + +
Sbjct: 135 LAEIAKEIDAAAILTGHTADDQIETIAMREKRSRNPRATGLAGMA-ESVLFENSIWITRP 193
Query: 241 DLKN--HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
L++ +I + Q WV+DP+N +P + R RIR L
Sbjct: 194 LLRSRRQAIRVFLQDRGHGWVDDPSNDNPAYERARIRAHL 233
>gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54]
gi|61216493|sp|Q6AJ19.1|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila
LSv54]
Length = 471
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 20/203 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
LK +I +GVSGG DS+AL +LT N + + L+AI +DHGLR +E
Sbjct: 25 LKSGDKIIVGVSGGADSIALLHILTE------LNLDLQ-------LIAIYIDHGLRPDEI 71
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E + V + +G E + D L + + ++AAR +RY+ F + ++ +
Sbjct: 72 PQEISFVKGQAGAVGAEFESISVDVLALKNCDKLSTEDAARRLRYQAFAEARERYGAKYI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
++AH+ADDQ E F +RL R SG GL+GM + + L +LL Q
Sbjct: 132 MVAHNADDQVEEFFIRLLRGSGRRGLSGMPYQ----NGLLLRPLLSLTKADLLLYLQERG 187
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
D ED +NR P ++RNRIR+ L
Sbjct: 188 IDHCEDSSNREPCYLRNRIRLDL 210
>gi|410943005|ref|ZP_11374746.1| cell cycle protein MesJ [Gluconobacter frateurii NBRC 101659]
Length = 414
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 123/284 (43%), Gaps = 32/284 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DS+AL L W+ ++A VDH LR ES EA + +
Sbjct: 37 VGLAVSGGGDSLALAWLAKRWR--------------HHVVAFVVDHALRVESAAEARLTA 82
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ MGI ++R L P +G LQE ARD R+ ++ C++ LL+AHH DQ
Sbjct: 83 RRLQAMGIDAHVLR---LAPFP-EGRLQERARDARFEALEEACVEAGCLDLLVAHHLHDQ 138
Query: 205 AELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E +R SG GLAGM A + + C L + + W+EDP+
Sbjct: 139 DETVWMRQHAGSGPSGLAGMGAVALRGRIRIVRPCL-MLPPERLRATLRAAGLAWIEDPS 197
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGY 323
N++ F R R R L S + + + A R + + ++ E+ G+
Sbjct: 198 NQNRRFERVRWRQDL----SPTQRDHAREWQVAAHVLRCSEDRELARVLAESAVWHSAGW 253
Query: 324 AVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 367
L P I+D ++ + LV QR RP R L+
Sbjct: 254 V-----HLKPDGIKDNTIAALIRLV---SGQRYRPSREQVQALV 289
>gi|451348543|ref|YP_007447174.1| YacA [Bacillus amyloliquefaciens IT-45]
gi|449852301|gb|AGF29293.1| YacA [Bacillus amyloliquefaciens IT-45]
Length = 472
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKYKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL++ + GLAGM + S + + IL C+ + D
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGWLIRPFLYAEKDEILEYCRQEGLSYRTD 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A Y++ + +N+ +T
Sbjct: 188 ESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYLQSLTKERMNKVIT 246
>gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
Length = 414
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 17/224 (7%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L W +G +G A L A+TVDHGLR +S EA
Sbjct: 17 PAGPLGVAVSGGSDSLALLHLLHDWASG----SGLA------LHAVTVDHGLRADSAAEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V +G+ ++ DG G+L + AR RY L + + + + H
Sbjct: 67 ACVGEIAGRLGVPHTVLHWTGWDG---AGNLSDRARRARYDLMAEWARGAGVAGIALGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
ADDQAE ++RL+R SGV GLA M+ ++ + ++ W+E
Sbjct: 124 ADDQAETLLMRLARGSGVAGLAAMSPGRSHAGVTFLRPLLTVRRAELRRYLDARDQKWIE 183
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSE----LQAVISACRRT 300
DPTN F R + R +L +L E + ++A R+T
Sbjct: 184 DPTNEDMRFDRPKARRALRELEPLGLTVEALNMVAGNMAALRKT 227
>gi|423072895|ref|ZP_17061641.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DP7]
gi|361856314|gb|EHL08229.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DP7]
Length = 472
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DQAE + RL R SG GLAG+ ++ +D IL C+
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAGIYPQKGKLIRPLLTVTKED-----ILEYCRNEKL 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+ D +N P++VRN+IR+ L + + +I A RT + V + E V
Sbjct: 182 PYALDHSNEEPVYVRNKIRLQLLPELQREYNPK---IIEALGRT-AEVLRWDEEYLEEEV 237
Query: 317 TVMDQGYAVIDLE 329
+ +A++D E
Sbjct: 238 QSAWKRWAILDTE 250
>gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
Length = 468
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 18/274 (6%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ K+RE + +K + +GVSGGPDS+ L + K E+
Sbjct: 4 LKKFREYINHHKL---IKKGDGVLVGVSGGPDSLTLLDMLVRVKD----------EYGLK 50
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYR 181
L+ +DH R+E+ EA VS+ ++ G++C I D +G +EAAR +R+
Sbjct: 51 LVVFHLDHKFRQEAAREARYVSNITNNYGLKCIIEEFDVPGLMNDEGLSPEEAARKVRFN 110
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
L K + + +AH+ DD E L + R +G+ GL G+ S+I +
Sbjct: 111 LMIKWVNSLNLNKIAVAHNKDDLVETVFLHMFRGTGLKGLTGIDPVSRIGGVEVIHPLLN 170
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISAC 297
+ I+ CQ N + V DPTN+ ++ RN+IR + D + K + +
Sbjct: 171 IYRQEIMDYCQRRNLNPVYDPTNQETIYTRNKIRHHIIPYIEDEINPGLKDVIYQMAEVV 230
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 331
R +++++ + + + Q Y ++ LE L
Sbjct: 231 REENNFLDYQAEKNLKKVLVDKGQDYVILSLEKL 264
>gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
Length = 472
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DQAE + RL R SG GLAG+ ++ +D IL C+
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAGIYPQKGKLIRPLLTVTKED-----ILEYCRNEKL 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+ D +N P++VRN+IR+ L + + +I A RT + V + E V
Sbjct: 182 PYALDHSNEEPIYVRNKIRLQLLPELQREYNPK---IIEALGRT-AEVLRWDEEYLEEEV 237
Query: 317 TVMDQGYAVIDLE 329
+ +A++D E
Sbjct: 238 QSAWKRWAILDTE 250
>gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51]
gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 472
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DQAE + RL R SG GLAG+ ++ +D IL C+
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAGIYPQKGKLIRPLLTVTKED-----ILEYCRNEKL 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+ D +N P++VRN+IR+ L + + +I A RT + V + E V
Sbjct: 182 PYALDHSNEEPVYVRNKIRLQLLPELQREYNPK---IIEALGRT-AEVLRWDEEYLEEEV 237
Query: 317 TVMDQGYAVIDLE 329
+ +A++D E
Sbjct: 238 QSAWKRWAILDTE 250
>gi|354543020|emb|CCE39738.1| hypothetical protein CPAR2_601580 [Candida parapsilosis]
Length = 509
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+G+SGGPDSM L L +K + + E + AIT+DH R S EA +
Sbjct: 25 KIAVGLSGGPDSMLLVWLLQKYKAYMPHNDLE-------IHAITIDHNYRSNSDIEAKQI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S ++ + I + + + +E AR RY + VC I +++ HH DD
Sbjct: 78 SQWMNQWNVNHIIHKLQYSVDPTTIANFEEVARTKRYEAIRSVCNTLGISTVVLGHHCDD 137
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI------------- 250
Q E F+ RL NS + GLA S I S S + + S++L+
Sbjct: 138 QVETFVQRLQGNSSIFGLACTRRFSNIPLSRDLSPSEQTNSASVMLVRPLLGFEKKAILS 197
Query: 251 -CQGGNRDWVEDPTNR-SPLFVRNRIRMSLG 279
CQ N +V DPTN + L RN +R G
Sbjct: 198 TCQSNNIPYVVDPTNNDTKLTRRNYLRYLFG 228
>gi|384262177|ref|YP_005417363.1| PP-loop protein [Rhodospirillum photometricum DSM 122]
gi|378403277|emb|CCG08393.1| PP-loop protein [Rhodospirillum photometricum DSM 122]
Length = 247
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 107/244 (43%), Gaps = 17/244 (6%)
Query: 35 PFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAF--SRRMAMAGLKPHHRIALGVSGG 92
P T S +PS + + V L E + SR + +P +A+ VSGG
Sbjct: 8 PPTPSNGVPSRKSGGLAADPPKVPALPQTAPALEPWFGSRLEGLGPFEPAPALAVAVSGG 67
Query: 93 PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI 152
DS+ L LT W G + A+ V+HGLR + EA V + G
Sbjct: 68 VDSLTLLALTCRWA------RARGGRVV----ALCVNHGLRAAAAGEAARVQRQAEAWGA 117
Query: 153 RCEIV-RCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211
I+ R D RP Q LQE AR R+ ++ C + LL+AHH +DQAE + R
Sbjct: 118 EGIILTRPD----RPPQTSLQEEARIFRHAALEEACRARGVLHLLLAHHQNDQAETVLER 173
Query: 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVR 271
L+R+SG GLA MA + D+ +++ W EDP+N+ P F R
Sbjct: 174 LARSSGPDGLAAMASITHRPGVRLLRPFLDVPKTALVATAHALGLSWDEDPSNQDPRFER 233
Query: 272 NRIR 275
R R
Sbjct: 234 ARWR 237
>gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
gi|167653318|gb|EDR97447.1| tRNA(Ile)-lysidine synthetase [Anaerostipes caccae DSM 14662]
Length = 437
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 31/200 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+GVSGG DS+ L +L K E+ L A+ ++HG+R E+ ++ V
Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQ----------EYDLELCAVHINHGIRREAFKDQEFVE 69
Query: 145 HRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ C + W+ + L+EA R +RYR F+KV H G +
Sbjct: 70 NL-------CRRRKVPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHGGGKIA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AHH +DQAE + R+SR +G+ GL GM A + + C LK IL + +
Sbjct: 123 VAHHQNDQAETMLYRMSRGTGIQGLKGMEAVRADVIRPLL--C---LKKEEILAYLKEKD 177
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
+DW+ED +N F RN+IR
Sbjct: 178 QDWMEDASNEDNTFARNKIR 197
>gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97]
Length = 774
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P RI L VSGG DSMAL L + T E +I VDH R ES +EA
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYI-------VDHKYRPESSQEA 90
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ RV ++G++ +++ W +G K+G + AR +RY++ + C++ I LL+
Sbjct: 91 QSVAKRVKNLGVQSKVLTLQWPEGGILTKKG-FETQARTLRYQILGQACVKDGIRALLLG 149
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM 224
HH DD E ++R+S+ LGL G
Sbjct: 150 HHQDDNVETALMRVSKGHRKLGLVGF 175
>gi|443635041|ref|ZP_21119211.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443345094|gb|ELS59161.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 472
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 119/261 (45%), Gaps = 21/261 (8%)
Query: 63 MTKYREAFSRR-MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M ++ FS+ +A+ G I +GVSGGPDSMAL L A G + N
Sbjct: 1 MKSVKDFFSKHHLALKGAT----IIVGVSGGPDSMAL--LHALHTLCGRSAN-------- 46
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMR 179
++A VDH R ES+E+ V + CE + + ++G + Q AARD R
Sbjct: 47 -IIAAHVDHRFRGTESEEDMRFVQAYCKAEQLACETAQINVTAYAEEKGLNKQAAARDCR 105
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ F+++ ++HQ L +AHH DDQ E ++RL++ + GLAGM + +
Sbjct: 106 YQFFEEIMLKHQADYLALAHHGDDQVETMLMRLAKGTLGAGLAGMQPVRRFGTGRIIRPF 165
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISA 296
+ IL C+ + D +N + RNR R ++ S Q V A
Sbjct: 166 LTITKEEILHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEA 225
Query: 297 CRRTRSYVEHVCSNLINEAVT 317
+++ + + +N+ +T
Sbjct: 226 LTEDEQFLQSLTKDEMNKVIT 246
>gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818]
Length = 774
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P RI L VSGG DSMAL L + T E +I VDH R ES +EA
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYI-------VDHKYRPESSQEA 90
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ RV ++G++ +++ W +G K+G + AR +RY++ + C++ I LL+
Sbjct: 91 QSVAKRVKNLGVQSKVLALQWPEGGILTKKG-FETQARTLRYQILGQACVKDGIRALLLG 149
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM 224
HH DD E ++R+S+ LGL G
Sbjct: 150 HHQDDNVETALMRVSKGHRKLGLVGF 175
>gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
Length = 646
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 29/268 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L + +I + VSGGPDS+AL + + + A+ V+H LR ES +
Sbjct: 18 LDRNKKILVAVSGGPDSLALLHFIVRFFP------------LQNIAAVHVNHQLRAESLD 65
Query: 139 EANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V +G+ + + K+G ++EAAR +RY+ F++V + I ++
Sbjct: 66 EETLVHDSCQTLGVDLFSRTIDVKAIAAERKKG-IEEAARYVRYQCFEEVMQEAGIDQVV 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHDDLKNHSILLIC 251
AHHADDQ E ++RL R S G +G+A + Q+ + + D IL C
Sbjct: 125 TAHHADDQVETIMMRLVRGSFSSGWSGIAPVRKLGAGQVIRPFLTASKSD-----ILAYC 179
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 308
Q + + D TN +F RNR+R + L + S S++ R ++++
Sbjct: 180 QRQDIQFALDDTNEETIFTRNRLRKKVIPLLKAENPSLASQITRFAEETREDFTFLDEQA 239
Query: 309 SNLINEAVTVMDQGYAVIDLEILNPSKI 336
L EA ++ G A +DL +L + I
Sbjct: 240 GELF-EACAELENGGARLDLVLLKKAGI 266
>gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Magnetospirillum magnetotacticum
MS-1]
Length = 429
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 123/249 (49%), Gaps = 14/249 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+AL +L A W + GE +LA+TVDH LR +S EA V
Sbjct: 12 RLAVAVSGGADSLALALLAAQWAR---ARGGE-------VLALTVDHRLRPDSTAEAERV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI I+ W +P LQ AAR RYRL + C I LL+AHH DD
Sbjct: 62 GEWLGGEGIAHRIL--AWEGDKPAA-DLQAAARAARYRLLGEACAAEGILHLLVAHHQDD 118
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +LRL R SG+ GL+ MA + + + +DWV+DP+
Sbjct: 119 QAETLLLRLGRGSGLDGLSAMAPERPTAWGRLLRPLLVVPRARLEAFLRHRGQDWVQDPS 178
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
NR+ F R R+R GDL++ ++ L R ++ V+ + + VT+ G
Sbjct: 179 NRNEAFARVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMVAEAAARHVTLDPAG 238
Query: 323 YAVIDLEIL 331
YA + ++L
Sbjct: 239 YARLQPKVL 247
>gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
Length = 383
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 14/279 (5%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR+ S +EA +V+ + +G+ +++ +W D RP+ G+LQ+ AR+ RY L
Sbjct: 22 TVDHGLRDGSHDEAMMVAAEAAKLGLSHDVL--EWRD-RPEGGNLQDEARNARYGLLTNW 78
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + V+ + H ADDQAE ++RL R SGV GL+ M + D+
Sbjct: 79 ARINDLSVIALGHTADDQAETLLMRLGRASGVSGLSAMPRMRAMDGVSLMRPLLDVTRDQ 138
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVE 305
+ + WV+DP+N F R RIR ++ L+ E L AV R ++
Sbjct: 139 LRAYLRKKQVAWVDDPSNEDTRFERIRIRQAMASLAPIGLTVERLAAVAQNLGAAREALD 198
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSK 365
E + + D G VID + D + L +Q++ P R
Sbjct: 199 WYTFLAAREMLEIRD-GAIVIDQREFR--TLPDEIAHRLLVRAVQWVGGAVYPPRRDP-- 253
Query: 366 LLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 404
++ RT S T AGC + +R K +C +
Sbjct: 254 -MMQAQRTARQGGSFTLAGCRIL----TRVQKVWICREV 287
>gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
Length = 419
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L N A L A TVDHGLR E+ EA
Sbjct: 17 PPPVLGVAVSGGGDSVALLHLL----------NDYARSRGIALRAATVDHGLRPEAAREA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ + +G+ + +R W G G+LQ AR RYRL IG + I H
Sbjct: 67 AMVAAQCRALGVPHDTLR--WT-GWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH--------DDLKNHSILLICQ 252
ADD AE F++RL R +GV GL+ M IF + H DL+ H L C
Sbjct: 124 ADDLAETFVMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNVRRADLRAH--LTRC- 177
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
WV+DP+N F R RIR +L L+ S A +S
Sbjct: 178 --GVTWVDDPSNEDDSFARVRIRKALAVLTDLGVDSAALADVS 218
>gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
Length = 389
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 117/265 (44%), Gaps = 49/265 (18%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 1 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 50
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 51 RPVSADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 106
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL--- 249
LL+ HHA DQ EL +R +R G GLAGMA ++ DD+ LL
Sbjct: 107 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDDIVILRPLLGTD 155
Query: 250 ------ICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTR 301
G WVEDP+N F R R+R + L S ++ R
Sbjct: 156 PAVLREFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDAD----------RR 205
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVI 326
+ E + ++ V++ +G+A++
Sbjct: 206 AAAERDVAEILVRDVSLRPEGWAIV 230
>gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
Length = 445
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 40/236 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGG DSMA+ L W + L +TVDHGLR E+ EA +V
Sbjct: 25 IGLAVSGGGDSMAMLTLAHNWTH----------RWGVRLWVVTVDHGLRPEAAAEATLVR 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G +R W DG QG+L +AAR R L + + + +L AH DD
Sbjct: 75 DTCAELGWPHTTLRWHW-DG---QGNLMDAARRGRLSLIGR--WRGGLPAVLFAHTRDDV 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-------CHD-----DLKNHSILLICQ 252
AE F++RL+R SGV GL+ MA +I + + C D ++ C
Sbjct: 129 AETFLMRLARGSGVDGLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCL 188
Query: 253 GGNRD------------WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
R+ WV+DP+N P + R R+R L +L+ +E A +
Sbjct: 189 DMGREELRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAG 244
>gi|453081336|gb|EMF09385.1| ATP_bind_3-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 581
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 100/241 (41%), Gaps = 54/241 (22%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ L VSGG DSMAL + + +K + + VDHGLR ES+EEA
Sbjct: 34 PKGRLGLAVSGGVDSMALASICSDFK--------KENQLHYSFSGFVVDHGLRSESREEA 85
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V++ + + I EI++ DW G PK + + AR +RY+ K C Q +I +L+
Sbjct: 86 LQVANELRRLDIEPEILKLDWTPYGNPKDLPNFETIARRLRYQAIGKACFQQRISTVLVG 145
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSI---------- 247
HHADD E + R+ GL G+ +++ I Y K HSI
Sbjct: 146 HHADDLGETVMSRIVARYLGEGLQGIKWTALIPECEGIYGVDASGKPHSINSSNTHTRKK 205
Query: 248 --------------------------------LLICQGGNRDWVEDPTNRSP-LFVRNRI 274
+ ICQ N W ED TN L +RN I
Sbjct: 206 ERRKSAMSDAMLIESGGVYLNRPLLLFTKAQLIEICQKDNVQWFEDDTNSDKSLTIRNTI 265
Query: 275 R 275
R
Sbjct: 266 R 266
>gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans
DSM 12444]
gi|123491176|sp|Q2GC97.1|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 326
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P R+ L VSGGPDS+AL +L Q +F TVDHGLR ES
Sbjct: 22 LDPSGRVCLAVSGGPDSLALMLLM---------QEVAPRDFC----VATVDHGLRAESAA 68
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V+ GI +R D G +QE AR RY + + + ++ A
Sbjct: 69 EAAMVAGLCEMRGIAYHTLRLDLAGG----SAVQERARKARYAALADLARRDGLSAVVTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLICQGGN 255
HHADDQAE ++RL+R +G+ GLAGM +S + + L + ++ + +
Sbjct: 125 HHADDQAETLVMRLNRGAGLRGLAGMRAASSVPGAGEVRLLRPLLGWRRAELVALVEDAG 184
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
V DP+N + R RIR
Sbjct: 185 LAPVLDPSNHDHRYERVRIR 204
>gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 472
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------IIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + R K + Q AARD RY+ F+ + ++HQ L +AHH D
Sbjct: 69 QAYCKAEQLACETAQINVTAYAREKGLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + + IL C+ + + D
Sbjct: 129 DQVETMLMKLAKGALGAGLAGMQPARRFGTGRIIRPFLTITKEEILHYCRENSLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNATDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS [Rhodospirillum centenum SW]
gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
centenum SW]
Length = 453
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 22/288 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+GVSGG DS+AL +L W + G +LA+TVDH LR ES EA V
Sbjct: 33 LAVGVSGGRDSLALVLLADAWAR---ARGGS-------VLALTVDHALRPESAAEAAQVG 82
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ GIR ++R W +G+ G +Q+AAR RY L + C LL+ H +DQ
Sbjct: 83 AWMAARGIRHAVLR--W-EGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQ 139
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE +LR +R+SG GLAGMA ++ D+ + C+ + W++DP+N
Sbjct: 140 AETVLLRAARSSGPDGLAGMAAVRELAGLRLLRPLLDIPRVRLAATCEALGQPWLDDPSN 199
Query: 265 RSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYA 324
S F R R+R + + + Q ++A RTR+ ++ + ++ + +G+
Sbjct: 200 LSDRFARGRLRRA----GAAGTEEPWQRALAAG-RTRAALDDAAAAVLAGQAALYPEGWG 254
Query: 325 VIDLEIL-NPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
+ L +P ED+ + L +LQ + P R + LL +
Sbjct: 255 EVAAAALCDPP--EDVA-RRVLLRLLQVVGGAALPPRSARLDRLLAAL 299
>gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
Length = 346
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
TD +RR+ A K I L VSGGPDS+AL L A W+ + G A
Sbjct: 4 TDHEAVSATEARRL-FADWKAAPAIVLAVSGGPDSLALMWLAARWRKS--LKQGPA---- 56
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR E+ EA V + + + +R W +P G +Q AAR RY
Sbjct: 57 --LAVVTVDHGLRPEAAAEARAVKRLAASLDLPHRTLR--WSGDKPSTG-IQAAARGARY 111
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
RL ++ AH DDQAE ++RLSR SG+ GLA MA +
Sbjct: 112 RLLANAAKTLGASHVMTAHTRDDQAETVLMRLSRGSGIAGLAAMAREIERDGVVLARPLL 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--CSFKS 288
D+ ++ + DP+N P F R R+R + L++ C +S
Sbjct: 172 DVPKARLIATLAKARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARS 221
>gi|367474926|ref|ZP_09474416.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 285]
gi|365272803|emb|CCD86884.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 285]
Length = 364
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 11/206 (5%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDSMAL L A W+ NG L+A+T+DHGLR E+ EA +V
Sbjct: 41 SGGPDSMALMWLAARWRA--ALANGPR------LVAVTIDHGLRPEAGREARMVKAVARH 92
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+G+ +R W D +P G L EAAR RYRL + Q ++ AH DDQAE +
Sbjct: 93 LGLPHRTLR--WTDDKPATG-LPEAARLARYRLLARAAGQAGASHVVTAHTRDDQAETVL 149
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLF 269
+RL R SG+ GLA MA S+ D+ ++ + D+ +DPTNR P +
Sbjct: 150 MRLLRGSGLAGLAAMAAISERAGLLLARPLLDVPKLRLVATLRSEGLDFADDPTNRDPAY 209
Query: 270 VRNRIRMSLGDLSSCSFKSELQAVIS 295
R R+R + L++ ++ A ++
Sbjct: 210 TRPRLRALMPALAAEGGDAKTLATLA 235
>gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
Length = 721
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKE 138
P RI L VSGG DSMAL L + + GF I GL A VDH R ES
Sbjct: 38 PLQRIGLAVSGGSDSMALVYLCSQLASQGF---------IPGLDIKAYIVDHKYRPESSH 88
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA+ V+ V +G+R +++ W DG K+G + AR +RY++ K C + + LL
Sbjct: 89 EAHSVADCVEKLGVRSKVLTLQWPDGEALTKKG-FETQARMLRYQILGKACTKDGVKALL 147
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGM 224
+ HH DD E ++R+S+ LGL G
Sbjct: 148 LGHHQDDNVETALMRVSKGHRKLGLVGF 175
>gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
Length = 430
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 45/338 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I + VSGG DSMAL + W N G E A+TVDHGLR E+ +EA +V
Sbjct: 32 KIGVAVSGGGDSMALLHMCIWWA----NLVGVTVE------AVTVDHGLRAEAADEAAVV 81
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ D G+ ++ +W DG +G++Q AAR+ RY L I +++ H ADD
Sbjct: 82 AAFCKDQGVSHSVL--NW-DGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADD 138
Query: 204 QAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
AE F++RL+R SGV GLA G+ ++ ++ + L+ H +
Sbjct: 139 IAETFLMRLARTSGVDGLAAMDARFDRDGVKWARPLWEQPRAQLRNYLRRHDV------- 191
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRSYVEHVCSNLIN 313
WVEDP+N R + R L L+ L++ + RS ++ ++
Sbjct: 192 --GWVEDPSNEDLSQTRPKARKILNALAPLGIDVGTLKSTAAFLSSARSALQCWAADEAR 249
Query: 314 EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL-VLQFICQRQRPVRGSTSKLLLHYIR 372
VT + G +I P E + + L L + +I P R K+ L+Y+
Sbjct: 250 RVVT-FEHGDVIIPTRSCPPVHTE---IERRLQLAAIGYINGEGYPPR----KMALNYLD 301
Query: 373 TFPCKTSL-TAAGCYLCPTPGS-RGTKALVCSSIDGPL 408
K T AGC++ G R ++ L ++++GP+
Sbjct: 302 VALLKQDRHTVAGCFVTKVDGGLRYSREL--NAVEGPI 337
>gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 457
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DHGLR S EA V+ + +GI I+ W +P G L AAR+ RYRL
Sbjct: 52 LLAVTIDHGLRSGSAAEAQTVAKLCARLGISHRIL--TWSGPKPSTG-LPAAAREARYRL 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV-------LGLAGMAFSSQIFSSYA 235
+ IG++L H ADDQAE ++R +R++G GLAGMA + ++
Sbjct: 109 LAEAAQAEGIGMILTGHTADDQAETVLMRHARDAGQGHAGMAGRGLAGMA-PATLYDWRI 167
Query: 236 YSCHDDLKNHSILL--ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ L +L + + N W +DPTN F R R+R +L
Sbjct: 168 WIVRPLLGVRRAVLRDVLRRQNVGWADDPTNVDAAFERPRVRAAL 212
>gi|359788655|ref|ZP_09291627.1| hypothetical protein MAXJ12_04854 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255582|gb|EHK58489.1| hypothetical protein MAXJ12_04854 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 435
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 111/229 (48%), Gaps = 24/229 (10%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGG DS AL +L + ++N A L+A+TVDHGLR +S EA V+
Sbjct: 24 VSGGSDSTALLLLLKAY----LDENAPAVR----LVAMTVDHGLRPDSAAEAQAVARFAE 75
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
GI I+ W +P G L AAR+ RY L + + +++ H ADDQAE
Sbjct: 76 SHGIAHRILA--WEGPKPATG-LPAAAREARYALLAEAAGEEGTDLIVTGHTADDQAETV 132
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGNRDWVEDPTNRS 266
++R +R+ G GLAGMA + +F A+ + + ++ + W+EDPTN +
Sbjct: 133 MMRQARSDG-RGLAGMA-PATLFDGKAWIVRPLLETRRETLRDYLRANGVPWLEDPTNVN 190
Query: 267 PLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT---RSYVEHVCSNLI 312
F R R R L D +++ +++A R R Y+ + LI
Sbjct: 191 QAFERPRARARLRD------DADVSKLLTAARDAALLREYLGREAAGLI 233
>gi|357023692|ref|ZP_09085864.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium amorphae CCNWGS0123]
gi|355544361|gb|EHH13465.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium amorphae CCNWGS0123]
Length = 463
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 20/217 (9%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DH LR S EA V+ ++ GI +R W +P G L AAR RYRL
Sbjct: 57 LLAVTIDHDLRPGSAAEARAVASLCAERGIAHRTLR--WSGPKPSSG-LPAAARQARYRL 113
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG-------VLGLAGMAFSSQIFSSYA 235
+ ++ I ++L H ADDQAE ++R +R+ G GLAGMA + ++
Sbjct: 114 LAQAALEDGIDLILTGHTADDQAETVLMRHARDEGRGLAEMAGRGLAGMA-PATLYDWRH 172
Query: 236 YSCHDDL--KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAV 293
+ L + ++ Q N W EDPTN F R R+R LG+ F
Sbjct: 173 WIVRPLLGARRAALRAFLQRENVGWAEDPTNADVHFERPRVRAVLGEDDGQRFAE----A 228
Query: 294 ISACRRT---RSYVEHVCSNLINEAVTVMDQGYAVID 327
IS RR R + H + LI + + G +D
Sbjct: 229 ISLARRVATEREELGHRAAILIRDFAAMPTTGLIRLD 265
>gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
Length = 299
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 136/302 (45%), Gaps = 17/302 (5%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ VSGGPDS+AL LT K ++ + F+ VDH LR S EA V
Sbjct: 1 MAVSGGPDSLALSFLT---KIYSLKKSLDVKYFL-------VDHRLRINSTIEAKSVQKL 50
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ + I I+ W +P++ ++Q +RD RY+L K + +I +L+ HH DD E
Sbjct: 51 LKNFYINLNIL--TWKGSKPEK-NIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFE 107
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
F +R+ R SG+ GL + +Q + ++ + ++ + + +V DP+N +
Sbjct: 108 NFFIRILRGSGLNGLVSLDRETQRDTVNLIRPLLEINKNDLVYLSKYVFGSYVNDPSNEN 167
Query: 267 PLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAV 325
F R ++R + L K++L I + ++H + + +T++ +
Sbjct: 168 DKFKRVKVRNFINQLGLEGLDKNKLFLTIRNLKLANENIKHYVEENLEKNITILSTKDKL 227
Query: 326 IDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGC 385
I + E +F S +L+ I ++ PVRG +L I+ LT GC
Sbjct: 228 ILKKNFFSHSDEVVFRS--FTEILKIIGKKYYPVRGKKIDKILQSIKA-KSSFKLTLGGC 284
Query: 386 YL 387
+
Sbjct: 285 VI 286
>gi|402770976|ref|YP_006590513.1| tRNA(Ile)-lysidine synthase [Methylocystis sp. SC2]
gi|401772996|emb|CCJ05862.1| tRNA(Ile)-lysidine synthase [Methylocystis sp. SC2]
Length = 344
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 98/205 (47%), Gaps = 13/205 (6%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
SR A+ L P+ + L VSGGPDS+AL +L A W G A TVDH
Sbjct: 20 SRERALDLLAPYPSLLLAVSGGPDSVALMLLCAQWPLRGSRHIAVA----------TVDH 69
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH 190
LREE++ EA V +G ++ W + +P LQE AR RY L +
Sbjct: 70 RLREEARAEAEEVGRWARALGYDHHLL--TWEEEKPST-RLQERARRARYALLTACARRI 126
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI 250
+ +AHH++DQAE + RL+R SGV GLAGMA ++ D + + +
Sbjct: 127 GASAIALAHHSEDQAETILFRLTRGSGVAGLAGMARIARHEDISLLRPLLDFRKEELEAV 186
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIR 275
C + + DP+N F R R+R
Sbjct: 187 CARAGQPFFRDPSNEDECFARVRLR 211
>gi|392391797|ref|YP_006428399.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390522875|gb|AFL98605.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 472
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 14/200 (7%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ + VSGGPDSMAL + + E E L+ V HG+REES +E
Sbjct: 16 PGSRVLMAVSGGPDSMALAHIL-------WRYVKEMKEQKITLVITHVHHGVREESDDEE 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+V D I C I R D + G Q AAR+ RY +++ + +L AH
Sbjct: 69 KMVKSMARDWEIPCLIHRFDSKEYAKSVGKSFQTAAREWRYACWKEDMRKENCTLLATAH 128
Query: 200 HADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H DQAE + RL R SG GLAG+ ++ +D IL C+ N +
Sbjct: 129 HLGDQAETVLYRLLRGSGTAGLAGIYPQKGELIRPLLSVTKED-----ILEYCRNENLPY 183
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
D +N P++ RN+IR+ L
Sbjct: 184 ALDCSNEEPIYARNKIRLQL 203
>gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
Length = 806
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 20/212 (9%)
Query: 25 LSLSSVKCRIPFTRSQYLPSIRLFC--KCSHAHAVEYLTDMTK------YREAFSRRMAM 76
L L +V P RS+ L + R+ K + A E + + + YR A
Sbjct: 6 LGLWAVTFAYPDRRSERLNNFRVVTENKPTEDKAKETFSTLWEISPQEFYRALTGLWTAW 65
Query: 77 AGLK--PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
G K RI L VSGG DSMAL L + T E +I VDH R
Sbjct: 66 QGGKYVSLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYI-------VDHKYRP 118
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQI 192
ES +EA V+ RV ++G++ +++ W +G K+G + AR +RY++ K C++ +
Sbjct: 119 ESSQEAQSVAKRVENLGVQSKVLTLQWPEGGILTKKG-FETQARMLRYQILGKACVKDGV 177
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
LL+ HH DD E ++R+S+ LGL G
Sbjct: 178 RALLLGHHQDDNVETALMRVSKGHRKLGLVGF 209
>gi|354593770|ref|ZP_09011813.1| hypothetical protein CIN_05090 [Commensalibacter intestini A911]
gi|353672881|gb|EHD14577.1| hypothetical protein CIN_05090 [Commensalibacter intestini A911]
Length = 424
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 44/262 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+ L +L + W+ ++A VDH LR S++EA I
Sbjct: 34 VAIAVSGGADSLCLALLASRWRKN--------------IIAFIVDHQLRNSSRQEAMITQ 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+S + I EI+ L+ P L+E AR RY C LL+ HHA DQ
Sbjct: 80 ERLSSLFIPSEILTLTDLEVGPA---LEERARIARYTALVHACYARGCIDLLLGHHAGDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMA---------FSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AE ++R+ S GL+GMA + Y L+ ++
Sbjct: 137 AETILMRIRAGSASDGLSGMAAIMDLPTIRLVRPLLHVYPQRLRATLREEKLV------- 189
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR-----TRSYVEHVCSN 310
WVEDP+N+ RNR+R L S S+K+ + R R + ++
Sbjct: 190 --WVEDPSNQDMRIQRNRLREEL----SSSWKTSGTVAVLLKRSQEEGLARMKRDQEQAD 243
Query: 311 LINEAVTVMDQGYAVIDLEILN 332
++ + V V +G+A++ ++
Sbjct: 244 ILAKDVVVRPEGFALLSSNVIE 265
>gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
Length = 412
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 132/304 (43%), Gaps = 26/304 (8%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
GL+ + L VSGG DSMAL L A E A+TVDHGLR E+
Sbjct: 12 GLREVRALGLAVSGGGDSMALLHLAA--------------EAGIAARAVTVDHGLRPEAA 57
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA V + +G+ +I+R + DGR G+L + AR R RL + + + +
Sbjct: 58 AEALEVGRVCTRLGVPHDILRWEGWDGR---GNLMDQARRARLRLISEWARGAGLDAVAL 114
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
H DD AE F++RL+R +GV GLA M + + + +
Sbjct: 115 GHTRDDVAETFLMRLARGAGVDGLAAMRAERRAEGMLWLRPLLGIGREELREELRRRGAA 174
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
W EDP+N + F R R+R ++ L+ E A ++ + V ++EA
Sbjct: 175 WFEDPSNENRAFDRVRVRQAMQGLAGLGLGPERLAEVAG---HLAEVRAALDAQLHEAAR 231
Query: 318 VM---DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
+ D+G ++ +L+ + D L + L +Q++ + RG L+ +R
Sbjct: 232 TLVRVDRGDVLMAPGVLD---LPDEILRRLLRGAVQWVASAEYGPRGPALARLMRDLRQG 288
Query: 375 PCKT 378
+T
Sbjct: 289 KGRT 292
>gi|297721059|ref|NP_001172892.1| Os02g0266500 [Oryza sativa Japonica Group]
gi|255670789|dbj|BAH91621.1| Os02g0266500, partial [Oryza sativa Japonica Group]
Length = 106
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 59/94 (62%), Gaps = 14/94 (14%)
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL------------- 249
++AELF+LRLSRNSGVLGLAG AF SQ+F+ D+ + ++L
Sbjct: 1 NEAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDNFSRYGVILVRPMLEFSKDDMY 60
Query: 250 -ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
ICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 61 KICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 94
>gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisA53]
gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53]
Length = 343
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL VL A W+ + E L+A+T+DHGLRE S EA V
Sbjct: 27 IVLAVSGGPDSLALMVLAARWRAA-LKRGPE-------LIAVTIDHGLREASAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++G+ + +R W +P G + AAR RY L K + AH DDQ
Sbjct: 79 KLAGNLGLPHKTLR--WRGDKPTSG-IPAAARAARYALLAKAARSTGATHIFTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RLSR SG+ GLA MA S+ + ++ ++ DP+N
Sbjct: 136 AETVLMRLSRGSGLAGLAAMARQSERCGLQLARPLLGIAKSQLIATLAKARIEFAVDPSN 195
Query: 265 RSPLFVRNRIR 275
P F R R+R
Sbjct: 196 SDPRFTRPRLR 206
>gi|346320764|gb|EGX90364.1| PP-loop family protein [Cordyceps militaris CM01]
Length = 721
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 63 MTKYREAF----SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAG 117
++++REA R L I L VSGG DSMAL L + + KT + A
Sbjct: 47 ISEFREAILATCKPRFPNVRLARRRPIGLAVSGGVDSMALAYLFSHYIKT--YKSQHIAD 104
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG------RPKQGHL 171
+ +LA+TVDH LR ES EA V+ V +G+R ++R +W D KQ ++
Sbjct: 105 NPVHDVLAVTVDHRLRPESTAEAAKVAANVRHLGLRALVLRINWSDHLGPDVVPSKQPNI 164
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
+ AR +RYR + ++ + L HH DDQ E ++RL G GL G+ ++ I
Sbjct: 165 ESMARTLRYRALGSLFLKQNVMSLFFGHHRDDQYETILMRLLSGHGYRGLQGIHKANSIP 224
Query: 232 SSY 234
+ Y
Sbjct: 225 ACY 227
>gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
Length = 333
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+ +GVSGGPDSMAL L+ + N+ E + +DHG+R+ S +EA V
Sbjct: 34 KFVIGVSGGPDSMALAYLSKVYSIDR-NKTFEC---------VIIDHGVRKNSGKEAKKV 83
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I+ I + + + + AR RY + C + ++ +L+ HH DD
Sbjct: 84 KSALLKHKIKSNIFKIKFENS----SNFHSEARVKRYDKIIEFCKRKKVKKILLGHHLDD 139
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
Q E F +RLSR SG+ GL+ + S+ + Y + K + ++ I + V DP+
Sbjct: 140 QVENFYIRLSRGSGLTGLSPIKKVSKYKNIYFLRPFLNTKKNELVKIAKKNFSFSVNDPS 199
Query: 264 NRSPLFVRNRIR 275
N ++R+R+R
Sbjct: 200 NFKDKYLRSRVR 211
>gi|374992849|ref|YP_004968348.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus orientis DSM 765]
gi|357211215|gb|AET65833.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus orientis DSM 765]
Length = 470
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 117/273 (42%), Gaps = 31/273 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDSMAL + W+ + G G I + V HG+R+ES +E +V
Sbjct: 19 KVLVAVSGGPDSMALSHIL--WRYA--REEGHRGISI---ILTHVHHGVRKESDDEVTLV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + C + R D G QEAAR RY +++ ++ +L AHH
Sbjct: 72 QNMAKLWDLPCRVHRFDAKGYAKTVGRSFQEAARAWRYDRWKEDMVEEGCSLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL-------KNHSILLICQGGN 255
DQAE + RL R SG GL GM Y C + IL C+
Sbjct: 132 DQAETILFRLLRGSGTAGLGGM-----------YPCKGSIIRPLLGFTKADILQYCKREG 180
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
+ D +N P++ RNRIR+ L ++ S +Q V+ + E +N A
Sbjct: 181 IPFALDHSNEEPIYARNRIRLELLPELEKNYNSRIQEVLGRTGELLRWDEEYFIGQVNAA 240
Query: 316 VT----VMDQGYAVIDLEILN-PSKIEDIFLSK 343
+ QG + +E+ + P+ I L K
Sbjct: 241 WKRYFFLDSQGDVCLRIEVFDEPAAILSRLLRK 273
>gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404487432|ref|YP_006711538.1| tRNA(Ile)-lysidine synthase TilS [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|61216472|sp|Q65PF4.1|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346426|gb|AAU39060.1| tRNA(Ile)-lysidine synthase TilS [Bacillus licheniformis DSM 13 =
ATCC 14580]
Length = 476
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 23 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 71
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 72 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++++++ + +GLAG+ + S + L +L C+ + DP+N
Sbjct: 132 ETMLMKMAKGTVGIGLAGIQPKRRFDSGWLLRPFLKLSKDDLLAYCKENRIPFRTDPSNS 191
Query: 266 SPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
+ RNR R + S Q+V Y++ + + +N +T
Sbjct: 192 EDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALTKDKMNTVITSKSSS 251
Query: 323 YAVIDLEIL 331
I +E L
Sbjct: 252 GVEISIERL 260
>gi|399991805|ref|YP_006572045.1| tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
gi|398656360|gb|AFO90326.1| putative tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 386
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLF 183
TVDHGLR S EEA +V+ + +G+ +I++ W D RP + G+LQE AR+ RY L
Sbjct: 22 TVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQ--WCD-RPTAGQAGNLQEQARNARYALL 78
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ I + + H ADDQAE ++RL R+SGV GL+ M+ S + ++
Sbjct: 79 TSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLSAMSRSRAMEGVTLLRPLLEVT 138
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
+ + WVEDP+N F R R+R ++ L E A ++
Sbjct: 139 REELRAYLRTRECCWVEDPSNEDARFERVRVRQAMEVLEPLGLTVERLAAVA 190
>gi|449092780|ref|YP_007425271.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis XF-1]
gi|449026695|gb|AGE61934.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis XF-1]
Length = 486
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RYR F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYRFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCRENGLSYRTDE 202
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 203 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 260
>gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818]
Length = 666
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
D L A+ VDH LR ES EEA+ V+ + G+ + W R H QE AR RY
Sbjct: 14 DRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAW---RVNDKHTQEMARHKRY 70
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
H ++ HHADD AE +LR R S V GLA M ++ YA++
Sbjct: 71 HALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMREVQPLY--YAHAFEP 128
Query: 241 DLKNHSIL--------LICQGGNRDWVEDPTNRSPL-FVRNRIRMSLGDL 281
L +L L C+ WVEDPTNR + RN IR +L L
Sbjct: 129 LLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRDATKYTRNSIRHALAAL 178
>gi|406601758|emb|CCH46629.1| tRNA(Ile)-lysidine synthase [Wickerhamomyces ciferrii]
Length = 456
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 109/266 (40%), Gaps = 29/266 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ +SGG DSM L L N+ + + I++DHGLR+ES E +
Sbjct: 21 KIAVSLSGGVDSMCLIHL--------LNKVNQLENLNISIYPISMDHGLRKESSNELKFI 72
Query: 144 SHRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
H + +G+ C LD ++ AR RY ++C QI +
Sbjct: 73 HHEMEKLGLDSNFQSCK-LDLSSLYTSNTDSTSISFEKLARIKRYDKLHEICNHLQIQNI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLK---------NH 245
HHADD E F+LRL NSG GL G++ S+ S + + LK
Sbjct: 132 FTGHHADDNLETFVLRLLNNSGEFGLRGISKISNAPLLSKPFISFNQLKLIRPLLDFNKF 191
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS--FKSELQAVISACRRTRSY 303
I N +WVED TN + RN IR L + S + VI+ +
Sbjct: 192 EIYKYANEQNTNWVEDYTNNEMIAKRNIIRKYLKENKETSKVLQETQHEVINLTNQIEIK 251
Query: 304 VEHVCSNLINEAVTVMDQGYAVIDLE 329
V ++ L N+ + I+L+
Sbjct: 252 VNNLYHKLQNQGTITQNLNSLNIELD 277
>gi|448533336|ref|XP_003870612.1| hypothetical protein CORT_0F02590 [Candida orthopsilosis Co 90-125]
gi|380354967|emb|CCG24483.1| hypothetical protein CORT_0F02590 [Candida orthopsilosis]
Length = 512
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+G+SGGPDSM L L +KT + E L AIT+DH R S EA +
Sbjct: 25 KIAVGLSGGPDSMLLMWLLQKYKTLMHYDDME-------LHAITIDHNYRVNSATEARKI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
S + + I + + D PK + +E AR RY +C I +++ HH D
Sbjct: 78 SQIMKQWNVNHIIEKLQY-DVDPKTIANFEEVARTKRYEAIGSICSTLDISTVVLGHHCD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--------------DLKNHSIL 248
DQ E F+ RL NS + GLA S I + + D + + +IL
Sbjct: 137 DQVETFVQRLQGNSSIFGLACTRQVSNIPLAVDLNPSDQPNFKPVKLVRPLLEYEKATIL 196
Query: 249 LICQGGNRDWVEDPTNR-SPLFVRNRIRMSLGDL 281
C + +V DPTN + L RN +R G++
Sbjct: 197 ATCDLNDIPYVVDPTNSDTKLTRRNYLRNLFGNV 230
>gi|400753447|ref|YP_006561815.1| tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis 2.10]
gi|398652600|gb|AFO86570.1| putative tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis
2.10]
Length = 386
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLF 183
TVDHGLR S +EA +V+ + +G+ +I++ W D RP + G+LQE AR+ RY L
Sbjct: 22 TVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQ--WCD-RPTAGQAGNLQEQARNARYALL 78
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ I + + H ADDQAE ++RL R+SGV GL+ M+ S + ++
Sbjct: 79 TSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLSAMSRSRAMEGVTLLRPLLEVT 138
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
+ + WVEDP+N F R R+R ++ L E A ++
Sbjct: 139 REELRAYLRARECCWVEDPSNEDARFERVRVRQAMEALEPLGLTVERLAAVA 190
>gi|423680460|ref|ZP_17655299.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis WX-02]
gi|383441566|gb|EID49275.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis WX-02]
Length = 476
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 23 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 71
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 72 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++++++ + +GLAG+ + S + L +L C+ + DP+N
Sbjct: 132 ETMLMKMAKGTVGIGLAGIQPKRRFDSGWLLRPFLRLSKDDLLAYCKENRIPFRTDPSNS 191
Query: 266 SPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
+ RNR R + S Q+V Y++ + + +N +T
Sbjct: 192 EDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALTKDKMNTVITSKSSS 251
Query: 323 YAVIDLEIL 331
I +E L
Sbjct: 252 GVEISIERL 260
>gi|452972548|gb|EME72378.1| tRNA(Ile)-lysidine synthase TilS [Bacillus sonorensis L12]
Length = 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 16/252 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANIV 143
I +GVSGGPDSMAL G + L+A VDH R ES+++ V
Sbjct: 20 IIVGVSGGPDSMALLHALKRMIPGSAS-----------LIAAHVDHMFRGLESEQDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
GI CE ++ + K + Q AAR+ R+R F+ +H L +AHH D
Sbjct: 69 KDFCKAEGILCEALQINVQKYAAEKNLNKQAAARECRFRFFKDQMEKHHATYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + LGLAG+ + + DL IL C+ + + DP
Sbjct: 129 DQIETMLMKLAKGTVGLGLAGIRPVRRFGEGWLIRPFLDLAKEDILQYCKANHVPFRTDP 188
Query: 263 TNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
+N + RNR R + S Q+V + Y++ + + +N +T
Sbjct: 189 SNNEDDYTRNRFRHHVLPFLKEESEDVHKRFQSVSESLTEDELYLQALTKDKMNTVITNK 248
Query: 320 DQGYAVIDLEIL 331
I++E L
Sbjct: 249 SSSCIEINVESL 260
>gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
Length = 469
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 16 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 64
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 65 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E ++++++ + +GLAG+ + S + L +L C+ + DP+N
Sbjct: 125 ETMLMKMAKGTVGIGLAGIQPKRRFDSGWLLRPFLRLSKDDLLAYCKENRIPFRTDPSNS 184
Query: 266 SPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
+ RNR R + S Q+V Y++ + + +N +T
Sbjct: 185 EDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALTKDKMNTVITSKSSS 244
Query: 323 YAVIDLEIL 331
I +E L
Sbjct: 245 GVEISIERL 253
>gi|385301442|gb|EIF45631.1| trna -lysidine synthase [Dekkera bruxellensis AWRI1499]
Length = 492
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 118/256 (46%), Gaps = 29/256 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ +SGG DSMAL + K QN + AITV+H +R ES EEA V
Sbjct: 28 IAVALSGGADSMALLNMLVRLKEEKL-QNLH-------IHAITVNHNVRPESAEEAQEVG 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
VS + + I+ + G PKQ +++ AR++RY+L C + G + + HH DQ
Sbjct: 80 EVVSKLPVEHHILDINQKIG-PKQ--MEKNARELRYKLLLGACEKVGAGDIFMGHHRSDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLK---------NHSILLICQGG 254
E F+LR+ NS + GL M + S+Y S + DLK IL C+
Sbjct: 137 LETFLLRMLXNSTLFGLRSM----KPVSNYPIVSPNLDLKVVRPMLNIDKSEILSYCKSA 192
Query: 255 NRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQ--AVISACRRTRSYVEHVCSNL 311
W ED TN P L RN R L D LQ ++ + + S+ + V +
Sbjct: 193 GLKWFEDRTNFIPGLTKRNYFRSLLKD-DKNKLPPALQKSKILDSLAKVESFNKIVDLRM 251
Query: 312 INEAVTVMDQGYAVID 327
N + ++G VID
Sbjct: 252 NNIRKRLQEEGADVID 267
>gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
Length = 419
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L N A L A TVDHGLR E+ EA
Sbjct: 17 PPPVLGVAVSGGGDSVALLHLL----------NDYARSRGIALRAATVDHGLRPEAAREA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ + +G+ + + W G G+LQ AR RYRL IG + I H
Sbjct: 67 AMVAAQCRALGVPHDTLM--WT-GWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH--------DDLKNHSILLICQ 252
ADD AE F++RL R +GV GL+ M IF + H DL+ H + Q
Sbjct: 124 ADDLAETFVMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNARRADLRAH----LTQ 176
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
G WV+DP+N F R RIR +L L+ S A +S
Sbjct: 177 RGVT-WVDDPSNEDDSFARVRIRKALAVLTDLGVDSAALADVS 218
>gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase, partial [Anaerostipes sp. 3_2_56FAA]
gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 31/200 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+GVSGG DS+ L +L K E+ L A+ ++HG+R E+ ++ V
Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQ----------EYDLELCAVHINHGIRREAFKDQEFVE 69
Query: 145 HRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ C + W+ + L+EA R +RY+ F+KV H G +
Sbjct: 70 NL-------CRRRKVPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHGGGKIA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AHH +DQAE + R+SR +G+ GL GM A + + C LK IL +
Sbjct: 123 VAHHQNDQAETMLYRMSRGTGIQGLKGMEAVRADVIRPLL--C---LKKEEILAYLKEKG 177
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
+DW+ED +N F RN+IR
Sbjct: 178 QDWMEDASNEDNTFARNKIR 197
>gi|423485315|ref|ZP_17462002.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-2]
gi|401135892|gb|EJQ43488.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-2]
Length = 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVEGLCKELGVICETLRINVSQYQQQYGMNTQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C G
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVNYCNGLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 VPRIDPSNKKEVYTRNRLR 207
>gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
MP104C]
Length = 470
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 26/251 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV---DHGLR-E 134
L+P + +GVSGGPDS+AL + G + + G+ +ITV +H LR
Sbjct: 17 LEPGMGVLVGVSGGPDSVALLDVLYGLRA------------VLGI-SITVAHLNHRLRGA 63
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIG 193
E++ +A V G+ C + CD R + +Q AAR++RY F + +
Sbjct: 64 EAEADARYVRKLAEKFGLPCIVEECDVPTFRKAERLSIQTAARELRYEFFARAARETGAR 123
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQG 253
+ + HHADDQAE + R +G GLAG+A +F ++ I C+
Sbjct: 124 RVALGHHADDQAETILHHFLRGTGPAGLAGIAPVRGLFIRPLLG----IRRREIEAYCRA 179
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACRRTRSYVEHVCS 309
D DP+N P++ RNR+R L L + L + CR Y+E
Sbjct: 180 RGLDPRLDPSNLDPVYTRNRLRAELLPLLETEYNPNLVTALLRLGEICRAENDYMEEQTE 239
Query: 310 NLINEAVTVMD 320
+ + D
Sbjct: 240 TIFRRSAAPTD 250
>gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
Length = 475
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
+ R+ M ++P +I +GVSGGPDS AL + + G+ L+ V+
Sbjct: 17 YIRKYKM--IQPGQKIVVGVSGGPDSSALLHVLMSLR----------GKLDAELIVAHVE 64
Query: 130 HGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVC 187
HG+R ++S E+A V MG+ + CD + G QE A R +RY F+++C
Sbjct: 65 HGMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQIC 124
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHS 246
+ +AH+ DD AE +L + R SG+ GL G+ I D+
Sbjct: 125 RYRGCNSIAVAHNKDDNAETILLHILRGSGLDGLVGIRPVRGDIIRPLL-----DVSRTD 179
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL 290
I C + D TN P ++RNRIR+ L S +F +
Sbjct: 180 IEAYCAAAGMNPRRDYTNNDPSYMRNRIRLKLIPFLSQNFNPNI 223
>gi|423613690|ref|ZP_17589550.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD107]
gi|401241379|gb|EJR47770.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD107]
Length = 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKEHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVRNLCKELGIICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|433772714|ref|YP_007303181.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium australicum WSM2073]
gi|433664729|gb|AGB43805.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium australicum WSM2073]
Length = 455
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 26/224 (11%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DHGLR+ S +EA V+ +D I ++ W +P G L AAR+ RY+L
Sbjct: 52 LLAVTIDHGLRQGSADEARTVAKLCADRDIAHRMLA--WSGAKPSTG-LPAAAREARYQL 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV----LGLAGMAFSSQIFSSYAYSC 238
IG+++ H ADDQAE ++R RN GLAGMA + +
Sbjct: 109 LASAARAEGIGLIVTGHTADDQAETVLMRRDRNDATRDEGRGLAGMAPA---------TL 159
Query: 239 HD--DLKNHSILLICQGGNRD--------WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
HD D +L + + RD W EDPTN F R R+R +L + +
Sbjct: 160 HDWRDWIVRPLLGVRRDALRDFLRRQQVGWAEDPTNADEAFERTRMRAALAGEAGAQRMN 219
Query: 289 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 332
+ A+ + R+ + + LI + G +D +L
Sbjct: 220 DALALAARQAGDRTRLGGEAARLIERFASQPAAGLIRLDPALLG 263
>gi|333977710|ref|YP_004515655.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821191|gb|AEG13854.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 20/251 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+ P ++ +GVSGGPDS+AL L W+ E L ++H R EE++
Sbjct: 17 ISPGDKVLVGVSGGPDSVALLHLL--WRM--------KEELQISLAVAHLNHMFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
+A +V +G+ + D R + G Q+AAR +RYR F++V + +
Sbjct: 67 ADARLVEGLAKSLGLPVHVEEFDVPAYRERTGLSAQDAARRVRYRFFEEVARRTGASRVA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HHADDQAE + R +G+ GL G+ + Y D++ I C+ +
Sbjct: 127 LGHHADDQAETILFNFLRGTGLAGLKGI---PPVRGKYIRPLL-DIRRREIEDYCREHSL 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACRRTRSYVEHVCSNLI 312
ED +N+ ++ RNRIR+ L + L + CR Y+E + L
Sbjct: 183 PVREDASNKKTIYTRNRIRLELIPRLEADYNPRLVDALVHLGHICREENDYLEEQAALLY 242
Query: 313 NEAVTVMDQGY 323
A+ + Y
Sbjct: 243 GRALKTQKEHY 253
>gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88]
gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger]
Length = 645
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L +SGG DSMAL L W+ + E + A VDH REES EAN+V
Sbjct: 47 RLGLAISGGADSMALAYLCKQWERTQTQTSDEK----TSVTAFVVDHKAREESTREANMV 102
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + DMG++ +I+ W P + AR +R++ + C H I LL+ HH
Sbjct: 103 AGWLDDMGLQTQILPLTW----PSHHISAFETHARRLRFQALGQACRAHSIETLLMGHHQ 158
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLICQGGNRDW 258
DD E + RL + GLAG+ ++I CH ++ S + + + GN D+
Sbjct: 159 DDNVETTLWRLCTGARGAGLAGIPAVTRI-----PECHGLFGVAESGSSITLLKPGNSDY 213
Query: 259 VEDPTNRSPL 268
TN + L
Sbjct: 214 RIKTTNTNEL 223
>gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217]
gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217]
Length = 419
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 127/294 (43%), Gaps = 41/294 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ + VSGG DS+AL L W+ G G A L A+TVDHGLR E+ EA
Sbjct: 20 PPPRLGVAVSGGSDSLALLHLLHDWQRAG----GPA------LAAVTVDHGLRPEAGAEA 69
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V+H + + + + G G+L + AR RY L + + I H
Sbjct: 70 AEVAHICARLNVPHHTLHWQGCGG---SGNLPDRARRARYTLMSDWAAAQGLTDIAIGHT 126
Query: 201 ADDQAELFILRLSRNSGVLGLA---------GMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
DD AE F++RL+R +GV GLA G+ F + + D L+
Sbjct: 127 QDDLAETFLMRLARGAGVDGLAAMRPRWTQEGVTFHRPLLGLAREALRDHLR-------- 178
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK----SELQAVISACRRTRSYVEHV 307
G + W++DPTN ++R R R L L+ +E+ +S R S+ H
Sbjct: 179 -GLRQTWIDDPTNVDTSYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALSHTTHA 237
Query: 308 CSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRG 361
+ +T ++ G +ID + + D + L LQ++ + P RG
Sbjct: 238 AA----RTLTRVEAGDLLIDHAGF--ANLPDEIARRLLHGALQWLTGAEYPPRG 285
>gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
gi|422687630|ref|ZP_16745806.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
gi|422733285|ref|ZP_16789606.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
Length = 497
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L S + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKESPAYQHFFLTAFFQKTL 311
>gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188]
gi|397698785|ref|YP_006536573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D32]
gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188]
gi|397335424|gb|AFO43096.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D32]
Length = 462
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L S + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKESPAYQHFFLTAFFQKTL 276
>gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 346
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
+SGGPDS+AL + + + + VDH +R S EA V +
Sbjct: 44 ISGGPDSLALAACSKIYSEKNHT----------NVFYLIVDHNIRANSALEAKRVQKNLL 93
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
+ + +I+ + R +Q+ ARD RY++ C +++I +L AHH DDQ E F
Sbjct: 94 KISAKAKILTIKKIISRS----IQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQIENF 149
Query: 209 ILRLSRNSGVLGLAGMAFSSQ------IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
+RLSR SG+ GL+ M + + I + S L + + + +++DP
Sbjct: 150 YIRLSRGSGLQGLSSMKIAEKNKEKITIVRPFLSSSKKIL-----IQVAKKIFTTFIKDP 204
Query: 263 TNRSPLFVRNRIR 275
+N + F+R+RIR
Sbjct: 205 SNTNDRFLRSRIR 217
>gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
gi|226695542|sp|B0UGN1.1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
Length = 344
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A +L TVDHGLR ES EEA V+
Sbjct: 32 LAVSGGPDSTALMGCAAALPP------------RVPVLVATVDHGLRPESGEEAAGVAAL 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+G+ I+ W +P+ LQEAAR RY L + + G +L AH DDQAE
Sbjct: 80 AGRLGLPHRIL--TWRGEKPRT-RLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAE 136
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
++RL SG GLAG+A + ++ DL ++ C + DP N
Sbjct: 137 TVLMRLCAGSGPAGLAGIAPARRLGGLLLGRPFLDLPKARLVATCAAAGWPFAVDPGN 194
>gi|350264166|ref|YP_004875473.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597053|gb|AEP84841.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 472
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------IIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+ + ++HQ L +AHH D
Sbjct: 69 QAYCKAEQLACETAQINVTAYSQEKGLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL++ + GLAGM + + + I C+ + + D
Sbjct: 129 DQVETMLMRLAKGTLGAGLAGMQPVRRFGTGRIIRPFLTITKEEIHHYCRENSLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|403382785|ref|ZP_10924842.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JC66]
Length = 473
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVL------TAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
+ P R+ VSGGPDSMAL L T WK L+ V+H
Sbjct: 17 IAPGERLVAAVSGGPDSMALIHLLLQLAKTWNWK----------------LMIGHVNHQF 60
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCI 188
R EES EA V GI C+I D ++ R + Q AAR+ R + V
Sbjct: 61 RKEESVLEAEFVQGWAEQAGIPCQIAVIDVPAYI--RETGDNAQNAAREKRLQFLAHVAG 118
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
Q + +++ HHADDQAE ++RL R +G GLAGMA+S D+ ++
Sbjct: 119 QFKARKIVLGHHADDQAETILMRLIRGTGPSGLAGMAYSQSWNGLQLVRPLLDVHKEELI 178
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRM 276
C+ ++ D +N + RNRIR+
Sbjct: 179 GYCKEHKLEYQLDSSNAERKYTRNRIRL 206
>gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
Length = 422
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 146/341 (42%), Gaps = 50/341 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS AL + W NG A + A+TVDHG R E+K+EA VS
Sbjct: 32 VGVAVSGGSDSTALLLACVEWA----KSNGVA------VHAVTVDHGQRVEAKQEAIAVS 81
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G+ I+ + L+ + Q ARD RY + ++ V+ + H ADD
Sbjct: 82 ELTAELGVEHSILTLETLEA---GANFQARARDARYAAMAQWAQARRLAVVAVGHTADDV 138
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD------- 257
AE F++RL+R +GV GLA M S ++ H+ +L + RD
Sbjct: 139 AETFLMRLARGAGVDGLAQMVGS--------WTAHEMSWVRPLLGFKRQALRDFLTAQRI 190
Query: 258 -WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
W +DP+N+S + R R L L+ + E ++A R S +V + AV
Sbjct: 191 VWSDDPSNQSIKYTRTAAREVLAALAPLGIEPETLRHVAASLRDASDALYVQTAEAATAV 250
Query: 317 TVMDQGYAV-IDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
D G A+ + + + I DI F+A + + P R +LL R
Sbjct: 251 FSQDAGGALTFETKAFHALPI-DIQRRLFMAAIRWIATRAYAPRRDEQKQLL----RASE 305
Query: 376 CKTSLTAAGCYLCPTPGSRGTKALVCSSI-------DGPLP 409
+ T GC T A CS+I GP+P
Sbjct: 306 SAVTATLGGCLF--------TNAAGCSTISREPAATQGPVP 338
>gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
gi|419823417|ref|ZP_14346967.1| tRNAile lysidine synthetase [Bacillus atrophaeus C89]
gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
gi|388472460|gb|EIM09233.1| tRNAile lysidine synthetase [Bacillus atrophaeus C89]
Length = 472
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL + G A I A VDH R S+E+ V
Sbjct: 20 IIVGVSGGPDSMALLNFL-------HTRFGRASVII----AAHVDHSFRGAASEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + + L Q AAR+ RYR F+ + ++HQ L +AHH
Sbjct: 69 QAYCKTERITCETVKMD-VSAYAEMNRLNKQAAARECRYRFFKDLMVKHQADYLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL++ + GLAG+ + + + + +L C + + D
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGIQPVRKFETGWLIRPFLSITKEDVLTYCLEHDVRYRTD 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S + Q V + Y++ + + +N+ +T
Sbjct: 188 ESNAKDDYTRNRFRKAVLPFLKQESHDVHRKFQKVSESLTEDEQYLQSLTKDEMNKVIT 246
>gi|387928162|ref|ZP_10130840.1| tRNA(Ile)-lysidine synthetase [Bacillus methanolicus PB1]
gi|387587748|gb|EIJ80070.1| tRNA(Ile)-lysidine synthetase [Bacillus methanolicus PB1]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 112/266 (42%), Gaps = 17/266 (6%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
EAF +R M + I +GVSGGPDS+AL L W+ E ++A
Sbjct: 7 EAFLKRHNMN--LANKDILVGVSGGPDSLAL--LHYLWRL--------KDERNLNIVAGH 54
Query: 128 VDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQK 185
VDH R ES E+A V GI E+ R + + + G Q AARD RY F K
Sbjct: 55 VDHMFRGNESYEDALFVKDFCEKRGIAFEMSRINVPEYIERSGKSPQAAARDCRYNFFIK 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ +H + L + HH DDQ E ++RL+R S AG++F +
Sbjct: 115 IMKKHGLRFLALGHHGDDQIETILMRLTRGSSGTARAGISFQRPFHDGKIIRPFLGISRR 174
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRS 302
I C+ + DP+N ++VRNR R + + Q R
Sbjct: 175 DIDEYCKRHGLEPRLDPSNNKNIYVRNRFRHHVLPFLHSENPQVHEHFQRFSEDLERDEK 234
Query: 303 YVEHVCSNLINEAVTVMDQGYAVIDL 328
Y++ + +N+ + +Q ID+
Sbjct: 235 YLQELTVEKMNKVIINKEQDRVTIDI 260
>gi|424912425|ref|ZP_18335802.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392848456|gb|EJB00979.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. viciae
USDA 2370]
Length = 441
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P H I + +SGG DS L + E G + L A+TVDH LR ES +E
Sbjct: 28 EPAH-ILVAISGGSDSTGLLLAL-------HEVMSEKGRDLLRLSAVTVDHALRVESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G + EA+R RYRL + + +++ H
Sbjct: 80 ARKVATLCAELGIPHVTRR--WEGLKPVSG-ISEASRLARYRLIAEAAVAFDADLVVTGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLK--NHSILLICQGGN 255
A DQ E +R +RNSG LGL+GMA + +++ + L+ +I +
Sbjct: 137 TAGDQRETVAMRAARNSGEDNLGLSGMA-DAVLYARRHWIMRPFLRCERQAIRDYVSSRS 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDL 281
R W++DP+N +P F R R+R +L D+
Sbjct: 196 RRWLDDPSNENPRFERVRMRQALPDV 221
>gi|415883960|ref|ZP_11545989.1| cell cycle protein MesJ [Bacillus methanolicus MGA3]
gi|387591755|gb|EIJ84072.1| cell cycle protein MesJ [Bacillus methanolicus MGA3]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL L W+ E ++A VDH R +ES E+A V
Sbjct: 22 ILVGVSGGPDSLAL--LHYLWRL--------KDERNLQIVAGHVDHMFRGDESYEDALFV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
GI E+ R + + K G Q AARD RY F+K+ +H + L + HH D
Sbjct: 72 KDFCEKRGILFEMSRINVPEYIKKSGKSPQAAARDCRYNFFKKIMKKHGLRYLALGHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL+R S AG++F + I C+ + DP
Sbjct: 132 DQIETILMRLTRGSSGTARAGISFQRAFHDGKIIRPFLGISRQDIEEYCKRHGLEPRLDP 191
Query: 263 TNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR-------TRSYVEHVCSNLINEA 315
+N ++VRNR R L KSE V +R Y++ + +N
Sbjct: 192 SNEKNIYVRNRFRHHLLPF----LKSENPQVHEHFQRFSEDLECDEKYLQELTVEKMNTV 247
Query: 316 VTVMDQGYAVIDLE 329
+ +Q ID++
Sbjct: 248 IMNKEQDRVTIDID 261
>gi|422408239|ref|ZP_16485200.1| bifunctional protein TilS/hprT, partial [Listeria monocytogenes FSL
F2-208]
gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208]
Length = 271
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W + + + + ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + I L +AHHA
Sbjct: 73 ETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL R S +G +G+ ++ YA + I+ Q + D
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKREVKGGYAIRPFLPITKAEIIAYAQKHELAYEID 191
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS-------YVEHVCSNLINE 314
+N S + RNR R L K E AV + R ++E + S+L+N+
Sbjct: 192 ESNASQEYTRNRYRAQLLPF----LKQENPAVYAHFERFSEETSEDFRFLEALASDLLNK 247
>gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
Length = 480
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKEHSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
Length = 480
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEA 116
VE + D K + R I +GVSGGPDS+AL + EA
Sbjct: 10 VEKVDDFVKQHDVLEERST---------IVVGVSGGPDSLALLYYLL--------EKKEA 52
Query: 117 GEFIDGLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEA 174
+ ++ VDH R +ES E+ V ++G+ CE +R + + + G + Q A
Sbjct: 53 KRW--EIVVAHVDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVA 110
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR+ RY +++ ++ + + HH DDQ E ++RL R S G AG+A + Y
Sbjct: 111 ARECRYAFLERIMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY 170
Query: 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ I+ C N DP+N+ ++ RNR+R
Sbjct: 171 LIRPLLGVTKEEIINYCNKLNVIPRIDPSNKKEVYTRNRLR 211
>gi|423416543|ref|ZP_17393632.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-1]
gi|401110197|gb|EJQ18108.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-1]
Length = 476
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + E G++ VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLGIVVAHVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|386712424|ref|YP_006178746.1| tRNA(Ile)-lysidine synthetase [Halobacillus halophilus DSM 2266]
gi|384071979|emb|CCG43469.1| tRNA(Ile)-lysidine synthetase [Halobacillus halophilus DSM 2266]
Length = 464
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 29/247 (11%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR- 133
+ PH + VSGGPDSMAL C + W ++ I+VDHGLR
Sbjct: 15 ISPHQTVLAAVSGGPDSMALLHFLCSIKNSWNLK--------------IIGISVDHGLRG 60
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQI 192
+ES ++ V ++ + GI D R + G QE+AR +RY+ F+++ + +
Sbjct: 61 QESMDDLEFVKNQCEEWGIEFAGTSVDVHSHRSESGTGTQESARYLRYQYFERMMEERKA 120
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
VL + HH DDQAE +++L R++ L GM L S I +
Sbjct: 121 DVLAMGHHGDDQAETMMMQLVRSARPESLQGMPIQRPFGRGQLVRPFLSL---SKSQIAE 177
Query: 253 GGNRDWVE---DPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
R V DP+N + RN R M + F S +QA+ R +SY+
Sbjct: 178 YNARHQVRARIDPSNEETNYTRNAFRKHVMPFLKEQNPKFHSHMQAMSQRMREDQSYIRE 237
Query: 307 VCSNLIN 313
+++
Sbjct: 238 QAREVLD 244
>gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
Length = 497
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WKDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|422735120|ref|ZP_16791400.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
Length = 497
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTQQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|392423529|ref|YP_006464523.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus acidiphilus SJ4]
gi|391353492|gb|AFM39191.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus acidiphilus SJ4]
Length = 471
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGGPDSMAL + W+ +++ G L+ V HG+R+ES +E +V
Sbjct: 19 RILVAVSGGPDSMALGHIL--WRY--MHEDSTRG---ISLVITHVHHGVRKESDQELELV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
I C R D G QEAAR+ RY +Q+ + + +L AHH
Sbjct: 72 QQMADLWEIPCLTHRFDSKGYAHDMGQSFQEAAREWRYARWQEDMRKEECTLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFS--SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DQAE + R+ R SG GLAG+ S S I ++ D I C+ +
Sbjct: 132 DQAETILYRILRGSGTAGLAGIYPSKDSIIRPLLTFTKED------IFRYCELEKLPYAI 185
Query: 261 DPTNRSPLFVRNRIRMSL 278
D +N P++VRNRIR+ L
Sbjct: 186 DQSNHQPVYVRNRIRLEL 203
>gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
Length = 480
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 22/331 (6%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
+ F++R + L+ H I +GVSGGPDS+AL + EA I +
Sbjct: 14 DEFAKRHDV--LEEHSTIVVGVSGGPDSLALLYYL-------LEKRKEAKLKI---VVAH 61
Query: 128 VDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQK 185
VDH R +ES E+ V + ++G+ CE +R + + + G + Q AAR+ RY ++
Sbjct: 62 VDHMFRGDESYEDLQFVENLCREIGVICETIRINVSQYQQQYGMNAQMAARECRYAFLER 121
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ +++ + + HH DDQ E ++RL R S G AG+A S Y +
Sbjct: 122 IMKKYEASYVALGHHGDDQVETILMRLVRGSTSKGYAGIAAKRPFHSGYLIRPLLAVTKK 181
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRS 302
I C+ DP+N ++ RNR+R + + + Q + +
Sbjct: 182 EINAYCKRIGITPRIDPSNEKEVYTRNRLRKHVLPYLKEENPHVHEQFQKFSVLMQEDEA 241
Query: 303 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 362
Y++ + +N+ +T V+ + + + + L+L ++ + + P S
Sbjct: 242 YLQELAFEKMNKVITKKSNKNIVLSIPAFESMSMP--LQRRGIQLILNYLYEYKIPSSLS 299
Query: 363 T---SKLLLHYIRTFPCKTSLTAAGCYLCPT 390
+ K++ + RT P + AG + T
Sbjct: 300 SIHIDKVIAFFKRTHPSGSLDFPAGLKIVRT 330
>gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L]
gi|61216463|sp|Q63HD6.1|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L]
Length = 476
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKEHSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|398309152|ref|ZP_10512626.1| tRNAile lysidine synthetase [Bacillus mojavensis RO-H-1]
Length = 470
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
I +GVSGGPDSMAL VL A + G + N ++A VDH R +S+E+
Sbjct: 20 IIVGVSGGPDSMALLHVLHALY---GRSAN---------VIAAHVDHRFRGAQSEEDMRF 67
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I+CE + + K G + Q AARD RY+ ++V +HQ L +AHH
Sbjct: 68 VQAYCEAEQIKCETAQINVTAYAEKNGLNKQAAARDCRYQFLKEVMSKHQADYLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL++ + GLAGM + + + IL C + D
Sbjct: 128 DDQVETMLMRLAKGALGAGLAGMQPVRRFETGRIIRPFLAITKEEILHYCHENALSYRTD 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + +N+ +T
Sbjct: 188 ESNAKDDYTRNRFRKAVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKEEMNKVIT 246
>gi|422698795|ref|ZP_16756680.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
29200]
gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
29200]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|422700054|ref|ZP_16757910.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
Length = 462
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WKDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|422728438|ref|ZP_16784856.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTQQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
Length = 472
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLPITKEEILHYCRENGLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480]
gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480]
Length = 717
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKE 138
P RI L VSGG DSMAL L + + +FI GL A VDH R ES
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCS---------RLVSPDFIPGLDLKAYIVDHKFRPESSR 88
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA++V+ R+ +GI+ +++ W G + + AR +RY+ K C I LL+
Sbjct: 89 EAHLVADRIEKLGIQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLL 148
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM 224
HH DD E ++R+S+ LGL G
Sbjct: 149 GHHQDDNVETALMRVSKGHRKLGLIGF 175
>gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
gi|422712934|ref|ZP_16769694.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
gi|422718248|ref|ZP_16774919.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
gi|424678909|ref|ZP_18115747.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV103]
gi|424679712|ref|ZP_18116526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV116]
gi|424684119|ref|ZP_18120845.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV129]
gi|424688440|ref|ZP_18125046.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV25]
gi|424691556|ref|ZP_18128079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV31]
gi|424695126|ref|ZP_18131510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV37]
gi|424696484|ref|ZP_18132829.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV41]
gi|424701884|ref|ZP_18138050.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV62]
gi|424704930|ref|ZP_18141016.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV63]
gi|424706365|ref|ZP_18142372.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV65]
gi|424719056|ref|ZP_18148284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV68]
gi|424719976|ref|ZP_18149102.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV72]
gi|424722739|ref|ZP_18151764.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV73]
gi|424733460|ref|ZP_18162020.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV81]
gi|424735220|ref|ZP_18163690.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV85]
gi|424754564|ref|ZP_18182473.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV93]
gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
gi|402350612|gb|EJU85514.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV103]
gi|402355667|gb|EJU90429.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV116]
gi|402360884|gb|EJU95478.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV25]
gi|402362111|gb|EJU96651.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV31]
gi|402362676|gb|EJU97194.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV129]
gi|402368973|gb|EJV03272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV37]
gi|402370848|gb|EJV05037.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV62]
gi|402377526|gb|EJV11424.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV41]
gi|402380132|gb|EJV13901.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV68]
gi|402380540|gb|EJV14290.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV63]
gi|402388173|gb|EJV21622.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV65]
gi|402391828|gb|EJV25108.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV81]
gi|402394939|gb|EJV28086.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV72]
gi|402400921|gb|EJV33726.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV73]
gi|402403013|gb|EJV35705.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV93]
gi|402404110|gb|EJV36741.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV85]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|422723121|ref|ZP_16779659.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
gi|424671691|ref|ZP_18108682.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 599]
gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
gi|402357959|gb|EJU92647.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 599]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|430756371|ref|YP_007211192.1| tRNA-lysidine synthetase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020891|gb|AGA21497.1| tRNA-lysidine synthetase [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 472
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCRENGLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|428277482|ref|YP_005559217.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
BEST195]
gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
BEST195]
Length = 472
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCRENGLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Enterococcus faecalis T8]
gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Enterococcus faecalis T8]
Length = 500
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 38 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 87
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 88 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 144
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 145 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 204
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 205 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 264
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 265 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 314
>gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
gi|422702609|ref|ZP_16760438.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|422686426|ref|ZP_16744623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
Length = 497
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|384512171|ref|YP_005707264.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis OG1RF]
gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus faecalis OG1RF]
Length = 497
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|418030587|ref|ZP_12669072.1| hypothetical protein BSSC8_00160 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471646|gb|EHA31759.1| hypothetical protein BSSC8_00160 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 486
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCRENGLSYRTDE 202
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 203 SNAKDDYTRNRFRKTVLPFMKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 260
>gi|422695389|ref|ZP_16753375.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
Length = 497
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
168]
gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774310|ref|YP_006628254.1| tRNAile lysidine synthetase [Bacillus subtilis QB928]
gi|452913169|ref|ZP_21961797.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis MB73/2]
gi|8039814|sp|P37563.2|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
168]
gi|402479496|gb|AFQ56005.1| TRNAile lysidine synthetase [Bacillus subtilis QB928]
gi|407955758|dbj|BAM48998.1| tRNAile lysidine synthetase [Bacillus subtilis BEST7613]
gi|407963029|dbj|BAM56268.1| tRNAile lysidine synthetase [Bacillus subtilis BEST7003]
gi|452118197|gb|EME08591.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis MB73/2]
Length = 472
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C + D
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583]
gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11]
gi|61216623|sp|Q839B3.1|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583]
gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11]
Length = 462
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|424755712|ref|ZP_18183573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis R508]
gi|402408997|gb|EJV41443.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis R508]
Length = 497
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R + L+ KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETRWEDLE---KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|347831232|emb|CCD46929.1| hypothetical protein [Botryotinia fuckeliana]
Length = 627
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 10/157 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNG---EAGEFIDGLLAITVDHGLREES 136
H + L VSGG DSMAL L K F +G G+ G A+ V+HG+R+ S
Sbjct: 33 HRTVGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKI--GFRAVIVNHGVRDGS 90
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLD--GRPKQ-GHLQEAARDMRYRLFQKVCIQHQIG 193
EEA V + +G+ I+ W D G P Q + + AR R++ K C + I
Sbjct: 91 LEEAQKVMGVLESLGMTSRILTLPWKDITGNPSQLPNFESLARKYRFQAIGKYCQKSDIS 150
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
+L+ HHADDQAE ++RL++ + +GL G+ SS I
Sbjct: 151 SILLGHHADDQAETVLMRLAKGARGVGLLGIKPSSPI 187
>gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
gi|422708802|ref|ZP_16766323.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
gi|422719767|ref|ZP_16776391.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
Length = 497
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETLAYQHFFLTAFFQKTL 311
>gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
Length = 445
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAIT 127
A +RR + +KP RI + +SGG DS L V L A T F L+A T
Sbjct: 7 AAARRFLRSFIKPG-RILVAISGGSDSKGLLVALHAALGTADFEGFS--------LVACT 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR +S +EA V + +GI ++ C W +P+ G +Q AAR RY + +
Sbjct: 58 VDHALRSDSADEAAAVGAFCAGLGIPHQV--CRWPGDKPRAG-IQAAARLKRYDMLAEAA 114
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVL-GLAGMAFSSQIFSSYAYSCHD--DLKN 244
+ + H DDQ E +R +R+ G G AGMA ++ ++ + L+
Sbjct: 115 AVFRADCIATGHTLDDQNETIAMRGARDQGQGHGSAGMA-AAMLYGRRTWVLRPFLGLRR 173
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
I G W +DP+N +PLF R R+R SL
Sbjct: 174 ADIRAYLGGRGIGWFDDPSNENPLFERARVRASL 207
>gi|407939982|ref|YP_006855623.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. KKS102]
gi|407897776|gb|AFU46985.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. KKS102]
Length = 316
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A+ P +A+ +SGG DS AL + A + +LAI V HGL+
Sbjct: 7 VALQAFAPALPLAVALSGGADSTALLLACAR-------------RWPGQVLAIHVHHGLQ 53
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQ-HQ 191
+ H V+ G +R LD RP G E AAR RY+ V ++ H
Sbjct: 54 AAAD---GFEQHCVALCGQLGVPLRVQRLDARPAPGQSPEDAARQARYQALTAVALEDHV 110
Query: 192 IGVL---LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+G + IA HADDQ E +L LSR +GV GLA M + + + +
Sbjct: 111 LGAIQSIAIAQHADDQVETLLLALSRGAGVAGLAAMPAQWERGGLVWHRPLLQVAASDVR 170
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
+ + WVEDPTNR + RNRIR L + +F S
Sbjct: 171 QWLKAQGQAWVEDPTNRDERYTRNRIRAQLLPILESAFPS 210
>gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
gi|421512577|ref|ZP_15959380.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 29212]
gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
gi|401674265|gb|EJS80620.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 29212]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
Length = 409
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Query: 83 HRIALGV--SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
HR LG+ SGG DS AL L GW G A LLA TVDHGLR S +EA
Sbjct: 20 HRPTLGIALSGGGDSTALMHLAHGW--------GRAR-----LLAATVDHGLRPGSADEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + I E +R R G+L AAR+ R +L +H + +L+ H
Sbjct: 67 RQAGLAAAALDIPHETLRWT----RRGGGNLMAAAREARLQLLAGWAGRHGLSAVLLGHT 122
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DDQAE ++RL+R +GV GL+ MA + F ++ + W +
Sbjct: 123 LDDQAETLLMRLNRGAGVDGLSAMAPMREAFGVTWLRPMLEIGRADLRHWLAARGLGWAD 182
Query: 261 DPTNRSPLFVRNRIRMSLGDL 281
DP+N + F R R+R ++ L
Sbjct: 183 DPSNENEDFERVRVRKAIAAL 203
>gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis]
Length = 486
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C + D
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLSYRTDE 202
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 203 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 260
>gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|384253551|gb|EIE27026.1| hypothetical protein COCSUDRAFT_83585 [Coccomyxa subellipsoidea
C-169]
Length = 130
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAG 223
GRP QG L +R RYRL C I LL HHADDQAE F+LRL+R SG+ GL G
Sbjct: 11 GRPSQGQLMPQSRQERYRLMTGACASLDIPCLLTGHHADDQAETFLLRLARGSGIDGLQG 70
Query: 224 M----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
M F + L + +C+ W EDPTN + + RN++R
Sbjct: 71 MRSLVPFVAGGMHGRILRPLLSLHKADLTEVCRSAGLPWAEDPTNANTAYARNKMR 126
>gi|422706372|ref|ZP_16764073.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
gi|422726409|ref|ZP_16782856.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
Length = 497
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2]
gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2]
Length = 424
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 132/332 (39%), Gaps = 41/332 (12%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
F +A + I L VSGG DS+AL L A + L +TVD
Sbjct: 14 FQNAIAASPTASEETIGLSVSGGGDSIALMHLAARLRDP------------KRLRVLTVD 61
Query: 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ 189
HGLR E+++E +V+ + +D+ I ++ W DG QG+LQ AAR R+
Sbjct: 62 HGLRPEAQQEIALVASQAADLNIDHAVMPWTW-DG---QGNLQAAARARRWAAVSAWAAM 117
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
H + + + H DDQ E ++RL+R SG+ GL M Y S DDL+ LL
Sbjct: 118 HNMREVWLGHTEDDQVETVLMRLARGSGIDGLTAM---------YPLSERDDLRILRPLL 168
Query: 250 IC---------QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRR 299
C Q W EDP+N P F R R R L + L I +
Sbjct: 169 GCARADLRHWLQSNKIPWCEDPSNDDPRFDRVRARQMFAQLEGLGLTRKRLLQTIDHMQA 228
Query: 300 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPV 359
++ + V D G + D L+ K + + + F R
Sbjct: 229 AHLSLQIAAHGFARQHVR-QDAGDLLCDPPALDLQKAD----APRRVMAAAFAWVGSRTY 283
Query: 360 RGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTP 391
R +LL R T +T AGC + P P
Sbjct: 284 RPRFEQLLDTVARARKGMT-VTLAGCIMTPEP 314
>gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
Length = 436
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 87 LGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
L +SGG DSMAL LT LLA V+HG +
Sbjct: 23 LALSGGRDSMALLQALTL-----------RRARLAAPLLACYVNHGWSAAGADWGAFCQR 71
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ + CEIV+ DW DG G+ + AR +RY+ GVLL AHH DDQA
Sbjct: 72 EATARDVPCEIVKLDWADG---GGNAEARARTLRYQALAARLPPR--GVLLTAHHRDDQA 126
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E FIL+ R SG+ GLA M + D+ +I +++DP+N
Sbjct: 127 ETFILQALRGSGLDGLAAMPARRAFAGGEHWRPLLDVPRAAIEAFVAAEGVAYLDDPSNA 186
Query: 266 SPLFVRNRIRM 276
P + RNR+R+
Sbjct: 187 DPHYARNRLRL 197
>gi|328542547|ref|YP_004302656.1| ATPase [Polymorphum gilvum SL003B-26A1]
gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Polymorphum gilvum SL003B-26A1]
Length = 442
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+AL L A W+ + A + TVDHGLR E++ EA V
Sbjct: 30 RLAIAVSGGADSLALLHLFADWQ----RRTARAPQ----AHVFTVDHGLRAEARAEAEHV 81
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + EI+ W GR +LQ AR+ RY L + L +AHH DD
Sbjct: 82 HRLCAGYCLPHEIL--TWA-GRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDD 138
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGNRDWVED 261
QAE F+ RL+R SGV GLA MA D+ ++ + W ED
Sbjct: 139 QAETFLDRLTRGSGVYGLAAMAADEADGPVGVRILRPLLDVPKARLIATLEAAGLSWFED 198
Query: 262 PTN 264
P+N
Sbjct: 199 PSN 201
>gi|430362598|ref|ZP_19427142.1| PP-loop family protein [Enterococcus faecalis OG1X]
gi|430368657|ref|ZP_19428338.1| PP-loop family protein [Enterococcus faecalis M7]
gi|429512112|gb|ELA01731.1| PP-loop family protein [Enterococcus faecalis OG1X]
gi|429516101|gb|ELA05596.1| PP-loop family protein [Enterococcus faecalis M7]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
faecalis JH1]
gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
faecalis JH1]
gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETLAYQHFFLTAFFQKTL 276
>gi|337265844|ref|YP_004609899.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
gi|336026154|gb|AEH85805.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
Length = 455
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRY 180
LLA+T+DHGLR++S EA V+ ++ GI R I W +P G L AAR+ RY
Sbjct: 52 LLAVTIDHGLRQDSAAEAQAVAKLCAERGIAHRTMI----WSGRKPSTG-LPAAAREARY 106
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV-----LGLAGMAFSSQIFSSYA 235
RL IG+++ H ADDQAE ++R +R+ + GLAGMA + ++
Sbjct: 107 RLLASAARAEGIGLIVTGHTADDQAETVLMRHARDGSLGHVQGRGLAGMA-PATLYDWRE 165
Query: 236 YSCHDDLKNHSILL--ICQGGNRDWVEDPTNRSPLFVRNRIRMSL-GD 280
+ L L Q + W EDPTN F R R+R +L GD
Sbjct: 166 WIVRPLLGTRRAALRDFLQSKHVGWAEDPTNSDESFERPRVRAALAGD 213
>gi|386683446|gb|AFJ19491.1| mitochondrial tRNA(Ile)-lysidine synthetase [Peltigera malacea]
Length = 598
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DSMAL L A K N E + A VDH R S +EA V
Sbjct: 33 RIGIAVSGGVDSMALARLCAELK----NLPKELQRWNFHFTAFIVDHRARPNSSKEAYFV 88
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+++ G+ I+ DW + Q + + AR +RY+ C QI LL+AHH D
Sbjct: 89 RNQLQTWGLPTIILPLDWSGVQAAQLPNFETQARRLRYQALGNACRDRQIQSLLLAHHED 148
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI 230
DQAE +LRL++ +GL GM ++QI
Sbjct: 149 DQAETVLLRLAQGHRGIGLTGMQDTAQI 176
>gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
Length = 462
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|367054508|ref|XP_003657632.1| hypothetical protein THITE_75223 [Thielavia terrestris NRRL 8126]
gi|347004898|gb|AEO71296.1| hypothetical protein THITE_75223 [Thielavia terrestris NRRL 8126]
Length = 695
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 9/169 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF-IDGLLAITVDHG 131
R A + H IA+ VSGG DSMAL L K +Q + + + + I VDHG
Sbjct: 31 RFPGARGRTHRPIAVAVSGGVDSMALAYLCT--KIRPTDQWFKVADHPVSNPIGIIVDHG 88
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLD------GRPKQGHLQEAARDMRYRLFQK 185
LRE S EA VS + +G++ I R W D +++ AR +RYR
Sbjct: 89 LREGSAAEAANVSQALKKIGVKPNITRLRWADVVEPGVNPSDLPNVETLARYLRYRRLGT 148
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
C Q+ LL AHH DDQ E ++RL G GL GM ++ I Y
Sbjct: 149 FCKVWQVATLLTAHHEDDQYETVLMRLLSGHGYRGLQGMRPATDIPECY 197
>gi|333922349|ref|YP_004495929.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333747910|gb|AEF93017.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 475
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 19/204 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
++P + +GVSGGPDS+AL + + E L A ++H R EE+K
Sbjct: 17 VQPGDLVVVGVSGGPDSVALLHVLYCLRD----------ELGISLHAAHLNHMFRGEEAK 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+A+ V + +GI C + D + ++ HL + AAR+ RYR F+ V L
Sbjct: 67 EDASFVQDLAAKLGIPCTVEERD-VPAYARKNHLSSEVAAREARYRFFRDVLQATGGSKL 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+AHHADDQAEL ++ + R +G+ GL+GM Q++ +++ I C
Sbjct: 126 ALAHHADDQAELVLMNILRGTGLKGLSGMWPVRDQVYIRPML----EVRRKDIEQYCHDH 181
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSL 278
N + D +N +++RNRIR L
Sbjct: 182 NLSFRIDSSNLKNIYLRNRIRQQL 205
>gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
Length = 480
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y +K I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVKKEEIVNYCNELKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|422811098|ref|ZP_16859509.1| bi-funtional protein tRNA(Ile)-lysidine synthetase /
Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes FSL J1-208]
gi|378751303|gb|EHY61894.1| bi-funtional protein tRNA(Ile)-lysidine synthetase /
Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes FSL J1-208]
Length = 648
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 24/245 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + + + + ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + I L
Sbjct: 68 EQNVVETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ YA + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKREVKGGYAIRPFLPITKAEIIAYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS-------YVEHVCS 309
+ D +N S + RNR R L K E AV + R ++E + S
Sbjct: 187 AYEIDESNASQEYTRNRYRAQLLPF----LKQENPAVYAHFERFSEETSEDFRFLEALAS 242
Query: 310 NLINE 314
+L+N+
Sbjct: 243 DLLNK 247
>gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
DSM 19965]
gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
DSM 19965]
Length = 466
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 33/205 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+I L VSGGPDS+ L + K+ GF+ + T+DH LR+ES EE
Sbjct: 8 KILLAVSGGPDSLGLLLAMNELKSSEGFS-----------IGCCTIDHHLRKESAEEVIY 56
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ ++GI C+++ + + + + + AAR++RY +++ +++ + +AHH+
Sbjct: 57 VNKICEELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHS 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE- 260
DDQAE I RL R G+ GL+GM + F L + + + +++
Sbjct: 117 DDQAETVIHRLIRGGGMTGLSGMLPKREYFI------------RPFLAVTKKEIQAYIDE 164
Query: 261 -------DPTNRSPLFVRNRIRMSL 278
D TN P RN+IR+ L
Sbjct: 165 FPYIPAHDKTNDIPDVTRNKIRLQL 189
>gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208]
Length = 240
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W + + + + ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + I L +AHHA
Sbjct: 73 ETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL R S +G +G+ ++ YA + I+ Q + D
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKREVKGGYAIRPFLPITKAEIIAYAQKHELAYEID 191
Query: 262 PTNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 192 ESNASQEYTRNRYRAQL 208
>gi|397677306|ref|YP_006518844.1| tRNA(Ile)-lysidine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395397995|gb|AFN57322.1| tRNA(Ile)-lysidine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 329
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 21/197 (10%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA
Sbjct: 30 EKLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARF 75
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ +G+ +I+ ++ K +Q AAR RY L + + +G L+ AHHAD
Sbjct: 76 VAQICQQIGVPHQILTTK-IEANGK--GMQAAARIRRYALMAEWAKEKNVGALMTAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
DQAE F++R +R SG+ GLA + +++ ++ + + +
Sbjct: 133 DQAETFLMRAARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEVVEKAGFTF 192
Query: 259 VEDPTNRSPLFVRNRIR 275
V DP+N +P + R R
Sbjct: 193 VSDPSNDNPHYDRTHFR 209
>gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
Length = 462
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
Length = 423
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I +GVSGG DSM L L G K N ID ++ +TVDHGLR+ESKEE N+V
Sbjct: 22 KILIGVSGGVDSMTLLYLLNGVKDI-LN--------ID-IVCVTVDHGLRKESKEEINLV 71
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGV--LLIAHH 200
+ + C D L + K+ ++EAAR +RY F + I+ ++G + +AH+
Sbjct: 72 KEFSRSLDVPCISGEIDVLGYSKEKKLSIEEAARKLRYEFFYR--IKEKVGASKIAVAHN 129
Query: 201 ADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNR-DW 258
+D E + RLSR +G G+ GM I + +D+++ + G N+ +
Sbjct: 130 LNDLVENVLFRLSRGAGPFGIYGMKPVKGNIIRPLLFFTREDIEDFA------GNNKIPY 183
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
D +N + RN IR ++
Sbjct: 184 AVDKSNFDTKYTRNFIRHNI 203
>gi|423718331|ref|ZP_17692513.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365267|gb|EID42566.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 462
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +GVSGGPDS+AL L W ++ L+A VDH R ++S+
Sbjct: 15 LTPDSTVIVGVSGGPDSLAL--LHFFWSI--------RQKWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H GI CE V+ D + +Q L QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCQTRGIICEAVQID-VPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+ HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYIIRPFLAISRAHIDAYCEKHQ 183
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
D +N + RNR R
Sbjct: 184 ITPRHDASNDKDDYTRNRFR 203
>gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Granulicella tundricola MP5ACTX9]
gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Granulicella tundricola MP5ACTX9]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
GLK R+ VSGG DS+A+ +L NG + G+ A+ V+HGLR ES
Sbjct: 8 GLKVGERVCCAVSGGADSVAMLLLVC-------AANGGSKGLGLGVSAVHVNHGLRGAES 60
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVL 195
+ V+ +G+ I R D +G ++EAAR++RY F+++ + + V+
Sbjct: 61 DGDEGFVAALCEGLGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVV 120
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
L AH DDQAE +++L R + GL G++ ++ ++ ++ +
Sbjct: 121 LTAHTLDDQAETVLMKLLRGAWTEGLGGISPVVEVPGGRVVRPVLGVRRGELVEFLKAKG 180
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
+ W ED +N F RNR+R ++
Sbjct: 181 QGWREDSSNADEAFTRNRLRHTV 203
>gi|294085869|ref|YP_003552629.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 444
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+T+ F+ M+ AGL H +SGG DS ALC+L + + +G+A
Sbjct: 9 LTRLDTEFAAAMSAAGLDQHISFVSALSGGADSTALCLLMSRFAVA----SGKAHR---- 60
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
AI VDHG+RE + EA V+ R+ GI +I + D P+ G +Q AR R+ +
Sbjct: 61 --AIIVDHGIRENAGAEAARVAARMQKFGINVKIEKVS--DKAPETG-IQAWARRQRFEI 115
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ LL+ HHA DQAE +RL ++SG++GLAGM +S D
Sbjct: 116 MLAHA-RRDNAALLVGHHAGDQAETIAMRLGKDSGLVGLAGMKRTSWRAGVPIGRPLLDW 174
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ IC+ ++ +DP+N F R R+R + + ++ ++L + A R+ +
Sbjct: 175 PADRMADICRIFACEFEDDPSNLDRRFERIRLRQFM--MQDKAYGAKLCRLGDAARQLLA 232
Query: 303 YVEHVCSNLINEAVTVMDQGYA 324
++ ++ + + + GYA
Sbjct: 233 MLDQTLADSLARDIRLDAAGYA 254
>gi|427413896|ref|ZP_18904087.1| tRNA(Ile)-lysidine synthetase [Veillonella ratti ACS-216-V-Col6b]
gi|425714937|gb|EKU77936.1| tRNA(Ile)-lysidine synthetase [Veillonella ratti ACS-216-V-Col6b]
Length = 473
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
AF ++ M + ++ + SGGPDSMAL W G E + V
Sbjct: 23 AFEKKRGM--VPGGSKVLVACSGGPDSMALL----HWL---ITNKGLETESALSIGVACV 73
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LR ESK E +V +D G+ + D ++ + ++ +R +RY F+K+C
Sbjct: 74 DHSLRPESKAELRMVKQYAADYGLAFYPLVIDAGVEAKASGESVETVSRRLRYEFFRKIC 133
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
++ AHH +DQAE + L R SG GL GM Q+ + + + + I
Sbjct: 134 RSEGYEYIVTAHHENDQAETILAHLIRGSGTAGLQGM----QVLAGDIWRPFLGVTKNDI 189
Query: 248 LLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
L + + D TN P+++RNR+R+ +
Sbjct: 190 LGYVKESGLPFALDATNDEPIYMRNRLRLEV 220
>gi|422738815|ref|ZP_16794002.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
Length = 497
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|408784863|ref|ZP_11196613.1| hypothetical protein C241_00240 [Rhizobium lupini HPC(L)]
gi|408489202|gb|EKJ97506.1| hypothetical protein C241_00240 [Rhizobium lupini HPC(L)]
Length = 461
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 16/206 (7%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P H I + +SGG DS L + E G + L A+TVDH LR ES +E
Sbjct: 28 EPAH-ILVAISGGSDSTGLLLAL-------HEVMSEKGRDLLRLSAVTVDHALRVESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G + EA+R RYRL + + +++ H
Sbjct: 80 ARKVATLCAELGIPHVTRR--WEGLKPVSG-ISEASRLARYRLIAEAAVAFDADLVVTGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLK--NHSILLICQGGN 255
A DQ E +R +RNSG LGL+GMA + +++ + L+ +I +
Sbjct: 137 TAGDQRETVAMRAARNSGEDNLGLSGMA-DAVLYARRHWIMRPFLRCERQAIRDYVSSRS 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDL 281
R W++DP+N +P + R R+R +L D+
Sbjct: 196 RRWLDDPSNENPRYERVRMRQALPDV 221
>gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
gi|386349149|ref|YP_006047397.1| PP-loop protein [Rhodospirillum rubrum F11]
gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
gi|346717585|gb|AEO47600.1| PP-loop protein [Rhodospirillum rubrum F11]
Length = 462
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+P IA+GVSGG DS+ L A W A E A+ DHGLR S
Sbjct: 28 FEPEPAIAVGVSGGVDSLTLLAFAARW----------AAERGGRCTAVCFDHGLRAASAG 77
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V +G ++R W G P +QEAAR R C + LL+A
Sbjct: 78 EARLVETTARSLGAEAVVLR--WA-GPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLA 134
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + RL R SG GLA MA S + ++ +I + W
Sbjct: 135 HHRDDQAETVLQRLGRGSGADGLAAMAALSSRGEARILRPFLEVPRAAIEASARRIGLVW 194
Query: 259 VEDPTNRSPLF 269
EDP+N P +
Sbjct: 195 AEDPSNHDPHY 205
>gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384412386|ref|YP_005621751.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|61217187|sp|Q5NLX8.1|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|335932760|gb|AEH63300.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 329
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 32/295 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA V
Sbjct: 31 KLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ +I+ +Q AAR RY L + + +G L+ AHHADD
Sbjct: 77 AQICQQIGVPHQILTTKI---EANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
QAE F++R +R SG+ GLA + +++ ++ I + +V
Sbjct: 134 QAETFLMRAARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVEKAGFTFV 193
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
DP+N +P + R R L S + + C+++ +E + + A +
Sbjct: 194 SDPSNDNPHYDRTHFRRLL-KASPWINRQHIAEAARYCQQSEEAIEWITAK--EAAARIR 250
Query: 320 DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
+G ++ L+P+++ L + + ++ I +RGS L +IR+
Sbjct: 251 KKG----EVLYLDPTELPIEILRRLVLRAMETITGNT-ALRGSA---LSRFIRSL 297
>gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
gi|428765884|ref|YP_007151995.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis str. Symbioflor
1]
gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Enterococcus sp. 7L76]
gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
gi|427184057|emb|CCO71281.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis str. Symbioflor
1]
Length = 462
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
gi|422691662|ref|ZP_16749691.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
Length = 497
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 122/290 (42%), Gaps = 17/290 (5%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYDFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
+ +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 311
>gi|384173726|ref|YP_005555111.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349592950|gb|AEP89137.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 472
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 16/238 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++ VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VITAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLMCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E +++L++ + GLAGM + + + IL C+ + D
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCRENGLSYRTDE 188
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + RNR R ++ S Q V A +++ + + +N+ +T
Sbjct: 189 SNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|358366655|dbj|GAA83275.1| PP-loop family protein [Aspergillus kawachii IFO 4308]
Length = 641
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 73 RMAMAGLK--PH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
R A G K PH RI L +SGG DSMAL L W+ Q + + + + A V
Sbjct: 31 RPARTGRKYDPHLPRRIGLAISGGADSMALAYLCKQWE---LTQRQTSNDTVS-VTAFVV 86
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH REES EAN+V+ + DMG+ +I+ W + AR +R++ + C
Sbjct: 87 DHKAREESTREANMVAGWLDDMGLMTQILPLTWPSY--SISAFETHARRLRFQALGQACR 144
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
I LL+ HH DD E + RL + GLAG+ ++I
Sbjct: 145 ARNIETLLMGHHQDDNVETTLWRLCTGARGAGLAGIPAVTRI 186
>gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisB5]
gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
BisB5]
Length = 347
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ + G A L +TVDHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALLWLAARWRKA--LKRGPA------LGVVTVDHGLRPEAAREARAVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +R W +P G A L K + ++ AH DDQ
Sbjct: 79 QLARTLDLPHRTLR--WTGEKPTTGLPAAARAARYR-LLAKAAKRFGATHIMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RLSR SG+ GLA MA ++ + D+ ++ ++ DP+N
Sbjct: 136 AETVLMRLSRGSGIAGLAAMARETERDGAVLVRPLLDVSKQRLIATLSKAQIEYTTDPSN 195
Query: 265 RSPLFVRNRIR 275
P F R R R
Sbjct: 196 LDPRFTRPRWR 206
>gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
345-E]
gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
345-E]
Length = 484
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 33/205 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+I L VSGGPDS+ L + K + GF + T+DH LR+ES EE
Sbjct: 26 KILLAVSGGPDSLGLLLAMNELKRSEGF-----------SIGCCTIDHHLRKESAEEVIY 74
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ ++GI C+++ + + + + + AAR++RY +++ +++ + +AHH+
Sbjct: 75 VNKICEELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHS 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE- 260
DDQAE I RL R G+ GL+GM + F L + + + +++
Sbjct: 135 DDQAETVIHRLIRGGGMTGLSGMLPKREYFI------------RPFLAVTKKEIQAYIDE 182
Query: 261 -------DPTNRSPLFVRNRIRMSL 278
D TN P RN+IR+ L
Sbjct: 183 FPYIPAHDKTNDIPDVTRNKIRLQL 207
>gi|384184146|ref|YP_005570042.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
CT-43]
gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 430
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|410672435|ref|YP_006924806.1| tRNA(Ile)-lysidine synthase TilS [Bacillus thuringiensis Bt407]
gi|423387028|ref|ZP_17364283.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-2]
gi|423526638|ref|ZP_17503083.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB1-1]
gi|452196439|ref|YP_007476520.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|401630282|gb|EJS48088.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-2]
gi|402455131|gb|EJV86915.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB1-1]
gi|409171564|gb|AFV15869.1| tRNA(Ile)-lysidine synthase TilS [Bacillus thuringiensis Bt407]
gi|452101832|gb|AGF98771.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
Length = 480
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 480
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
gi|402562845|ref|YP_006605569.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-771]
gi|423364626|ref|ZP_17342095.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD022]
gi|423565579|ref|ZP_17541854.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A1]
gi|434378706|ref|YP_006613350.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-789]
gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
gi|401072738|gb|EJP81200.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD022]
gi|401193656|gb|EJR00660.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A1]
gi|401791497|gb|AFQ17536.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-771]
gi|401877263|gb|AFQ29430.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-789]
Length = 476
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 329
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 32/295 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA V
Sbjct: 31 KLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ +I+ +Q AAR RY L + + +G L+ AHHADD
Sbjct: 77 AQICQQIGVPHQILTTKI---EANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
QAE F++R +R SG+ GLA + +++ ++ I + +V
Sbjct: 134 QAETFLMRAARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVKKAGFTFV 193
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
DP+N +P + R R L S + + C+++ +E + + A +
Sbjct: 194 SDPSNDNPHYDRTHFRRLL-KASPWINRQHIAEAARYCQQSEEAIEWITAK--EAAARIR 250
Query: 320 DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
+G ++ L+P+++ L + + ++ I +RGS L +IR+
Sbjct: 251 KKG----EVLYLDPTELPIEILRRLVLRAMETITGNT-ALRGSA---LSRFIRSL 297
>gi|351729463|ref|ZP_08947154.1| tRNA(Ile)-lysidine synthetase [Acidovorax radicis N35]
Length = 321
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A G AI V HGL+
Sbjct: 8 AMQAFAPALPLAVGLSGGADSTALLLACARRWPGQVR-------------AIHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ + D+G+ + R D R G E AAR RY+ F+ V + Q
Sbjct: 55 AADGFEQHCAALCQDLGVPLWVERPD---ARHAPGQSPEDAARQARYKAFEAVALASKAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + IA HADDQAE +L LSR +GV GLA M + Y + I
Sbjct: 112 LAIKSIAIAQHADDQAETLLLALSRGAGVAGLAAMPARWERAGVVWYRPLLPVAAIDIRS 171
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
+ + WVEDPTN + RNRIR L +F +
Sbjct: 172 WLRAQGQGWVEDPTNTDQRYTRNRIRAQLLPALEAAFPA 210
>gi|338708436|ref|YP_004662637.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295240|gb|AEI38347.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 329
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 31/284 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G+ GF+ + A+TVDH LR+ES EEA V
Sbjct: 31 KLGIAVSGGGDSLALLLL--GY-VSGFD-----------VEAVTVDHSLRQESAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + I +I+ +Q AAR RY L + + Q+ L+ AHHADD
Sbjct: 77 AQICQQLAIPHQILTTQI---EATGEGIQAAARIRRYALMAQWAKERQVTALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH-----DDLKNHSILLICQGGNRDW 258
QAE ++R + SG+ GLA + + +FS+ + D + I +
Sbjct: 134 QAETLLMRAAHGSGIAGLAAIR-PNVLFSAEGQTIRLLRPLLDFSRLELATIVEKAGLKA 192
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
V DP+N +P + R R L + + +L C+++ ++ + A +
Sbjct: 193 VSDPSNDNPHYDRTHFRRLL-IAAPWIDRRKLANTARYCQQSEEALDWITQK--EAAARI 249
Query: 319 MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 362
QG V +P + L + + L LQ + ++++ VRG+
Sbjct: 250 RLQGKGV----RFDPEDLPIEILRRLVVLCLQRVGEKKQ-VRGT 288
>gi|423583713|ref|ZP_17559824.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD014]
gi|401208345|gb|EJR15112.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD014]
Length = 476
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 480
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 MPRIDPSNKKEVYTRNRLR 211
>gi|392869771|gb|EAS28294.2| tRNA(Ile)-lysidine synthetase [Coccidioides immitis RS]
Length = 815
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGGPDSMAL L G + FI VDH RE+S +EA V+
Sbjct: 43 IALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVA 95
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ MG++ +++ W +G L + AR +RY+ C+ I L + HH
Sbjct: 96 GWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHR 155
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
DD E +LRL++ G GLAG S I C HS+ + Q G+
Sbjct: 156 DDNVETALLRLAQGHGRFGLAGFDSVSPI-----PEC------HSLWGVSQSGD 198
>gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
Length = 480
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R L L + + Q + +Y++ + + +N
Sbjct: 193 MPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEAYLQELAFDKMN 252
Query: 314 EAVT 317
+ +T
Sbjct: 253 KVIT 256
>gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
Length = 480
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 MPRIDPSNKKEVYTRNRLR 211
>gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 815
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGGPDSMAL L G + FI VDH RE+S +EA V+
Sbjct: 43 IALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVA 95
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ MG++ +++ W +G L + AR +RY+ C+ I L + HH
Sbjct: 96 GWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHR 155
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQI 230
DD E +LRL++ G GLAG S I
Sbjct: 156 DDNVETALLRLAQGHGRFGLAGFDSVSPI 184
>gi|423633606|ref|ZP_17609259.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD156]
gi|401283316|gb|EJR89211.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD156]
Length = 476
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579]
gi|423651384|ref|ZP_17626954.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD169]
gi|61216614|sp|Q81J84.1|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579]
gi|401278436|gb|EJR84369.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD169]
Length = 476
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
Length = 462
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVVEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + R + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
Length = 419
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 129/315 (40%), Gaps = 38/315 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ VSGG DSMAL VL W +NG L +TVDH LR +++ EA V
Sbjct: 26 FGVAVSGGSDSMALLVLANAWAI----ENGHV------LYVVTVDHQLRPDARVEAETVG 75
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
S +G+ +++ + GR G+ E AR+ RY L Q ++ L + H DDQ
Sbjct: 76 DFCSTLGLPHQVLTWNGWVGR---GNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQ 132
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL---------ICQGGN 255
AE ++ ++R SGV GL+ M A H DL LL I G+
Sbjct: 133 AETLLMSIARKSGVDGLSAM---------RARRAHGDLVLMRPLLGFARGDLRQILTEGD 183
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNLINE 314
W +DP+N R ++R L D+++ +S L V + +S + V + +
Sbjct: 184 ISWADDPSNDDITSERIKMRHLLTDMAASGIDRSALAQVALNLQSAQSALAVVAHDAAKK 243
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 374
T + V + D + LA L ++ Q R K LL +
Sbjct: 244 MATFVGGEIHVATSAFF---ALPDETRFRILAHSLTWLASAQNRPR---QKALLQVMDAI 297
Query: 375 PCKTSLTAAGCYLCP 389
T GC + P
Sbjct: 298 GLGKIATLHGCIVYP 312
>gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|380031556|ref|YP_004888547.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum WCFS1]
gi|448820213|ref|YP_007413375.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum ZJ316]
gi|61216640|sp|Q88Z33.1|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|342240799|emb|CCC78033.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum WCFS1]
gi|448273710|gb|AGE38229.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum ZJ316]
Length = 448
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHD 240
V +++ +L AHHA+DQ E ++++L+R + L G+A S ++ D
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIATSRPFATGRLIRPLLTWSKD 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
L+N++ + + ED TN+ RNRIR
Sbjct: 172 QLRNYAA-----EQHVVYFEDVTNQDVALTRNRIR 201
>gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 480
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 MPRIDPSNKKEVYTRNRLR 211
>gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
Length = 480
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 MPRIDPSNKKEVYTRNRLR 211
>gi|429463248|ref|YP_007184711.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811304|ref|YP_007447759.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338762|gb|AFZ83185.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776462|gb|AGF47461.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 334
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS + + T FN ++ V+HGL+E + + V
Sbjct: 25 KIAIAVSGGVDSSTMSYIAKK-ATEKFNI---------SMVLFHVNHGLQETADNWSRHV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
H ++++ + EI L K+ ++ AARD RY+ F + ++H I + +AHH D
Sbjct: 75 -HSLANL-LDVEIYEKKILVDSIKKKGIEGAARDARYKAFYDLSMEHGIHHVFLAHHQKD 132
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--W--V 259
QAE + RL R SGV G+AGM S++ + + D+ ++I + + + D W +
Sbjct: 133 QAETLLFRLLRGSGVKGMAGMKKISKVNNIFYIRPWLDIDKNNIDIESKKFSLDNSWFPI 192
Query: 260 EDPTNRSPLFVRNRIRMSL 278
DPTN+ P + R IR L
Sbjct: 193 NDPTNKDPAYSRGVIRFFL 211
>gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114]
gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 414
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 133/317 (41%), Gaps = 46/317 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL VL G+ +NG A L TVDHGLR E+ +EA V+
Sbjct: 20 LGVAVSGGSDSMALLVLLCGFA----ERNGVA------LSCATVDHGLRPEAADEARSVA 69
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + ++ + DG G+ Q AAR RYRL I + + H DDQ
Sbjct: 70 GYCAAHDVPHVTLKWEGWDG---TGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK---NHSILLICQGGNRD---- 257
AE ++ L+R SGV GL+ M + DD + +L + G R
Sbjct: 127 AETVLMGLARASGVDGLSAMP-----------ARRDDRGLCWHRPLLATSRAGLRGFLSA 175
Query: 258 ----WVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNLI 312
W EDP+N F R + R +L L+ ++ L V + R+ +E I
Sbjct: 176 NGVAWCEDPSNDDAQFERIKARRALTTLAELGVDRASLAQVAQNMAQARAALEQQTRRAI 235
Query: 313 NEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHY 370
+ V+++ G A++ PS+I + L + +I P K L
Sbjct: 236 GDLVSLLGGG-AMMPWSGFQTLPSEIA----RRVLMAAIDWIAA---PPHAPRQKALTAA 287
Query: 371 IRTFPCKTSLTAAGCYL 387
+ S T AGC L
Sbjct: 288 LSALRASGSATVAGCRL 304
>gi|423589362|ref|ZP_17565448.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD045]
gi|401224015|gb|EJR30575.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD045]
Length = 476
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
Length = 448
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHD 240
V +++ +L AHHA+DQ E ++++L+R + L G+A S ++ D
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIATSRPFATGRLIRPLLTWSKD 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
L+N++ + + ED TN+ RNRIR
Sbjct: 172 QLRNYAA-----EQHVVYFEDVTNQDVALTRNRIR 201
>gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
Length = 497
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 122/296 (41%), Gaps = 29/296 (9%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALFTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYDFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG+ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYP 201
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRT 300
+ Q + ED TN++ ++RNR+R + L + F ++ + + R
Sbjct: 202 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFA 261
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKI-------EDIFLSKFLALVL 349
+ +++ ++EAV QG+ NP ++ + FL+ F L
Sbjct: 262 QEFIQEQIEPQLSEAVEPTKQGWR------FNPKRLLKETPAYQHFFLTAFFQKTL 311
>gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J2-071]
gi|404406672|ref|YP_006689387.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2376]
gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J2-071]
gi|404240821|emb|CBY62221.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2376]
Length = 648
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + ++ + + ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVSK--------EAISVAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + I L
Sbjct: 68 EQNVVETFCERHGIPFYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ YA + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKREVRGGYAIRPFLPITKAEIIAYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
gi|423632861|ref|ZP_17608606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD154]
gi|423644700|ref|ZP_17620317.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD166]
gi|423658458|ref|ZP_17633757.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD200]
gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
gi|401258905|gb|EJR65086.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD154]
gi|401269484|gb|EJR75514.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD166]
gi|401287791|gb|EJR93562.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD200]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 480
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 MPRIDPSNKKEVYTRNRLR 211
>gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|423427616|ref|ZP_17404647.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-2]
gi|423506581|ref|ZP_17483170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HD73]
gi|449086730|ref|YP_007419171.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|401108011|gb|EJQ15947.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-2]
gi|402447406|gb|EJV79258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HD73]
gi|449020487|gb|AGE75650.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 448
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHD 240
V +++ +L AHHA+DQ E ++++L+R + L G+A S ++ D
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIATSRPFATGRLIRPLLTWSKD 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
L+N++ + + ED TN+ RNRIR
Sbjct: 172 QLRNYAA-----EQHVVYFEDVTNQDVALTRNRIR 201
>gi|423438944|ref|ZP_17415925.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X12-1]
gi|401115432|gb|EJQ23284.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X12-1]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|418274211|ref|ZP_12889709.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376009777|gb|EHS83103.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 448
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHD 240
V +++ +L AHHA+DQ E ++++L+R + L G+A S ++ D
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIATSRPFATGRLIRPLLTWSKD 171
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
L+N++ + + ED TN+ RNRIR
Sbjct: 172 QLRNYAA-----EQHVVYFEDVTNQDVALTRNRIR 201
>gi|342873062|gb|EGU75294.1| hypothetical protein FOXB_14202 [Fusarium oxysporum Fo5176]
Length = 708
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 116/279 (41%), Gaps = 43/279 (15%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A RI L +SGG DSMAL L F A + G+LA+ VDH L
Sbjct: 31 RFPTARFARPQRIVLAISGGVDSMALAFLMTK-AVRSFRGMKVADNPVHGVLALVVDHKL 89
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
R+ S EA+ V+ + + I+ + W + + P+Q +++ AR RYR +
Sbjct: 90 RDGSDHEASEVAKELRKLDIKASVSALSWKEEKRQGLNPRQLPNVEGLARTYRYRALGRY 149
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
C H L AHH+DDQ E ++RL G GL G+ ++ I C+D
Sbjct: 150 CSYHGSNSLFFAHHSDDQYETVLMRLLGGHGYRGLQGIREANSI-----PECYD------ 198
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
G + + D RS + SF+ L+ + RR R +
Sbjct: 199 ----LHGVYKSGLLDDQLRS--------------APALSFRPALKELKHLRRRIRDELTL 240
Query: 307 VCSNLINEAVTVMDQGYA-------VIDLEILNPSKIED 338
+NL+++ + Q Y + D+ L P ++ED
Sbjct: 241 EKANLLDDIPQDLIQSYPGSEEVRELSDVPFLKPLEVED 279
>gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
Length = 480
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCHKLKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
AK-01]
gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
AK-01]
Length = 480
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 127/290 (43%), Gaps = 34/290 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R+ GVSGGPDS AL + + + EF L V+H LR EES +A
Sbjct: 32 RVLAGVSGGPDSTALVHVLSRLQK----------EFALQLGVAHVNHCLRGEESDRDALF 81
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + + D R + G L+EAAR+ R F + +H + + HHA
Sbjct: 82 VQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQEHGYDFVALGHHA 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DD AE ++ L R +G GL+G+ + + L IL C+ WV+D
Sbjct: 142 DDNAEWMLISLIRGAGAGGLSGIPPVNGKTVRPLFK----LTRKEILKYCRENALKWVQD 197
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 321
TN+ +RN+IR+ L + + A++ R SN++ E MD
Sbjct: 198 STNQDQSILRNQIRLHLLPILESQYNP---AIVPGLNR--------LSNILREEHLWMD- 245
Query: 322 GYAVIDLE-----ILNPSKIEDIFLSK-FLALVLQFICQRQRPVRGSTSK 365
G A LE I N ++ + L K LAL + + Q VRG+T K
Sbjct: 246 GMARDFLEDHAKPIKNGLELSLVHLVKQPLALQRRIVLQAMAEVRGNTRK 295
>gi|423520632|ref|ZP_17497105.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA4-10]
gi|401180528|gb|EJQ87686.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA4-10]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
Length = 480
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 23 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 192
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 193 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYLQELAFEKMN 252
Query: 314 EAVT 317
+ +T
Sbjct: 253 KVIT 256
>gi|423370748|ref|ZP_17348152.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD142]
gi|401073335|gb|EJP81760.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD142]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 189 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYLQELAFEKMN 248
Query: 314 EAVT 317
+ +T
Sbjct: 249 KVIT 252
>gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
Length = 480
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|423513003|ref|ZP_17489533.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-1]
gi|402446351|gb|EJV78211.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-1]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 189 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQIQEDEAYLQELAFEKMN 248
Query: 314 EAVT 317
+ +T
Sbjct: 249 KVIT 252
>gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
Length = 330
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDSMA+ +L A F + TVDHGLR E+ EE +V+
Sbjct: 33 LAVSGGPDSMAMLMLAAA-------------AFPGRIAVATVDHGLRPEAAEELRMVAEH 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+G+ +R P +G LQ AR+ RY L +L AHHADDQA
Sbjct: 80 CRILGVPHHGLRP----ATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQA 135
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E F++R +R +G+ GL+G+ ++I D + + I + +V+DP N
Sbjct: 136 ETFLMRAARGAGLSGLSGVRVRTEINGVPVLRPLLDWRRAELRQIVRRAEAPFVDDPANH 195
Query: 266 SPLFVRNRIRMSLG 279
P R R R LG
Sbjct: 196 DPRHDRTRFRQLLG 209
>gi|423671094|ref|ZP_17646123.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM034]
gi|423672683|ref|ZP_17647622.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM062]
gi|401293925|gb|EJR99558.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM034]
gi|401311415|gb|EJS16716.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM062]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423410711|ref|ZP_17387831.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3O-2]
gi|423433505|ref|ZP_17410509.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4O-1]
gi|401109942|gb|EJQ17859.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3O-2]
gi|401111568|gb|EJQ19457.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4O-1]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQRQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
gi|423456694|ref|ZP_17433544.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X1-1]
gi|423556940|ref|ZP_17533243.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MC67]
gi|423595294|ref|ZP_17571324.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD048]
gi|423659618|ref|ZP_17634787.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM022]
gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
gi|401128441|gb|EJQ36131.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X1-1]
gi|401194019|gb|EJR01016.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MC67]
gi|401222220|gb|EJR28817.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD048]
gi|401304637|gb|EJS10187.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM022]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
gi|375282160|ref|YP_005102593.1| hypothetical protein BCN_0060 [Bacillus cereus NC7401]
gi|423357793|ref|ZP_17335385.1| tRNA(Ile)-lysidine synthase [Bacillus cereus IS075]
gi|423572014|ref|ZP_17548230.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A12]
gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
gi|358350681|dbj|BAL15853.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401073974|gb|EJP82382.1| tRNA(Ile)-lysidine synthase [Bacillus cereus IS075]
gi|401199148|gb|EJR06058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A12]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCHKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423597213|ref|ZP_17573213.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD078]
gi|401239554|gb|EJR45979.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD078]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
Length = 480
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E + ++ VDH R +ES
Sbjct: 23 LEEHSTIVVGVSGGPDSLALLYYLL--------EKREEKKL--KIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A S Y + I C+
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGYVIRPLLAVTKEEINAYCKRLGV 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N ++ RNR+R
Sbjct: 193 TPRMDPSNEKEVYTRNRLR 211
>gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
HaA2]
gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
HaA2]
Length = 346
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 11/191 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ + G A L +T+DHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALMWLAARWRKA--RKRGPA------LFVVTIDHGLRPEAAREARSVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ +R W +P G A L + ++ AH DDQ
Sbjct: 79 QFARTLGLPHRTLR--WTGDKPATGLPAAARAARYRLLAKAAKAVGAAHIM-TAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE ++RLSR SG+ GLA M + + D+ ++ + DP+N
Sbjct: 136 AETVLMRLSRGSGIAGLAAMPRETARDGAVLVRPLLDVSKQRLVATLDRAKIGFAVDPSN 195
Query: 265 RSPLFVRNRIR 275
P F R R+R
Sbjct: 196 ADPRFTRPRLR 206
>gi|393768431|ref|ZP_10356971.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. GXF4]
gi|392726257|gb|EIZ83582.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. GXF4]
Length = 336
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS AL + A G Q TVDHGLR +S EA V
Sbjct: 24 VLLAVSGGPDSSAL--MHAAAALGASVQ------------VATVDHGLRPDSGSEAEGVG 69
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ ++ W +P G LQ+AAR RYRL G++L H DDQ
Sbjct: 70 RAARALGLPHAVL--TWAGPKPGTG-LQDAARAARYRLLAAHAEAVGAGLVLTGHTQDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-CHDDLKNHSILLICQGGNRDWVEDPT 263
AE ++RL+ SG GLAGM + L ++ C V DP
Sbjct: 127 AETVLMRLAAGSGPAGLAGMRTERPLAPGITLGRPFLALPKATLTAWCVARGIPHVRDPA 186
Query: 264 NRSPLFVRNRIRMS 277
N P F R R+R +
Sbjct: 187 NADPRFARARLRAT 200
>gi|407708013|ref|YP_006831598.1| 4-hydroxyphenylpyruvate dioxygenase [Bacillus thuringiensis MC28]
gi|407385698|gb|AFU16199.1| tRNA-lysidine synthase [Bacillus thuringiensis MC28]
Length = 480
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987]
gi|402554350|ref|YP_006595621.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus FRI-35]
gi|61216566|sp|Q73FE5.1|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|401795560|gb|AFQ09419.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus FRI-35]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCHKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
Length = 458
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R EES+++ V
Sbjct: 21 VVVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGEESQQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R S + G AGM + + I C+ D
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGMQPKRPYADGFIIRPFLAVTKEEINRYCKLHGLTPRID 189
Query: 262 PTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
P+N + RNR R + + + + Q ++Y+E + ++++N+ +
Sbjct: 190 PSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTDVMNKVMRK 249
Query: 319 MDQGYAVID 327
Q +ID
Sbjct: 250 KLQNEILID 258
>gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601]
gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601]
Length = 448
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 107/239 (44%), Gaps = 46/239 (19%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGG DSMA+ L W A + L +TVDHGLR E+ EA +V
Sbjct: 28 IVLAVSGGGDSMAMLTLAHNW----------AHVWGTRLWVVTVDHGLRPEAGNEAALVR 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++G +R W DG QG+L +AAR R L + + + +L+AH DD
Sbjct: 78 ETCDELGHPHTTLRWRW-DG---QGNLMDAARRARLDLIGR--WRGGLSHVLLAHTRDDV 131
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAY-----SCHD------------------- 240
AE F++RL+R SGV GL+ M ++ + A +C
Sbjct: 132 AETFLMRLARGSGVDGLSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCL 191
Query: 241 DLKNHSI---LLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
D++ + L + +G WVEDPTN + R RIR L L + +E A +
Sbjct: 192 DMRRAELRHYLRVLKG---RWVEDPTNEDDHYERARIRKLLRGLEAEGLGAETLAATAG 247
>gi|359408654|ref|ZP_09201122.1| tRNA(Ile)-lysidine synthetase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356675407|gb|EHI47760.1| tRNA(Ile)-lysidine synthetase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 447
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147
VSGGPDS+AL ++ A EA + A+ +DHGLR E+ EA V+ +
Sbjct: 33 AVSGGPDSLALALVAA-------EVCAEASVRFE---AVVIDHGLRAEAATEAQQVASAL 82
Query: 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207
+ I RC + G Q AR R ++ Q VL AHH DDQAE
Sbjct: 83 TRRNI---PARCFSVSGPAPVSGRQAWARMKRLQILCDYARQRGSAVLF-AHHRDDQAET 138
Query: 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSP 267
++RLSR SG+ GL+ +A S L ++ +CQ D+V DP+N P
Sbjct: 139 VLMRLSRGSGLAGLSAIAAYSLYQGVVFGRPFLGLSKGDLIAVCQAYGADFVTDPSNADP 198
Query: 268 LFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 308
F R R R L + ++ + + V+ C
Sbjct: 199 TFERVRTRQLLQRADQAPLRQQMMRLAAVASSVTEQVKGEC 239
>gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
japonicus yFS275]
gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
japonicus yFS275]
Length = 462
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 132/316 (41%), Gaps = 37/316 (11%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
+ VSGG DSM L L + + + A V+HGLR+ES E+A I
Sbjct: 25 GVAVSGGVDSMCLVHL--------LRETMLQYLWPKRIHAFIVEHGLRKESAEDAVITRR 76
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
R+ DMGI I+ + KQ ++ AR +RYR K C++H+I L AHH +DQ
Sbjct: 77 RLLDMGIPSTILPLNHKWDLSKQSKIETIARVLRYRTLAKACLRHKIYGLFTAHHLNDQY 136
Query: 206 ELFILR-LSRNSGVL-GLAGMAFSSQIFSSYAYSCHDDLKNHSILLI---------CQGG 254
E ++R L R G GL G+ + + S D ILL+ C
Sbjct: 137 ETIVMRLLQRKPGTWGGLCGIRKVAPLPES-----EDIYGADQILLLRPFLSYPKTCIKK 191
Query: 255 NRDWVEDPTNRS-PLFVRNRIRM----SLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 309
W ED +N+ L VRN IR +L S Q + +++ + CS
Sbjct: 192 KVQWCEDKSNKDIQLTVRNAIRAVGVDTLVSTEIASISQTFQELEDHSQKSVHSLLKQCS 251
Query: 310 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 369
L +A+ I I++ S D ++FL ++ I + + R S +
Sbjct: 252 CLYFKAIHSFQMQIPCI---IMDTS--SDFIKTEFLMYLIDIITPKTKKKRRSIEGI--- 303
Query: 370 YIRTFPCKTSLTAAGC 385
R + LTA GC
Sbjct: 304 SKRLWNSTKPLTAGGC 319
>gi|423618754|ref|ZP_17594587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD115]
gi|401252596|gb|EJR58852.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD115]
Length = 476
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423471711|ref|ZP_17448455.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-2]
gi|402430809|gb|EJV62883.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-2]
Length = 476
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 189 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYLQELAFEKMN 248
Query: 314 EAVT 317
+ +T
Sbjct: 249 KVIT 252
>gi|423490678|ref|ZP_17467360.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BtB2-4]
gi|423496418|ref|ZP_17473062.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER057]
gi|423496788|ref|ZP_17473405.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER074]
gi|401149148|gb|EJQ56627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER057]
gi|401163969|gb|EJQ71309.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER074]
gi|402429023|gb|EJV61114.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BtB2-4]
Length = 476
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQVLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 189 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYLQELAFEKMN 248
Query: 314 EAVT 317
+ +T
Sbjct: 249 KVIT 252
>gi|423388167|ref|ZP_17365393.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-3]
gi|401644357|gb|EJS62049.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-3]
Length = 476
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423520203|ref|ZP_17496684.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-4]
gi|401155468|gb|EJQ62878.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-4]
Length = 476
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGYLIRPLLGVTKEEIVDYCNKLKV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
Length = 480
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 15/244 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 23 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 73 EDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKV 192
Query: 257 DWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
DP+N+ ++ RNR+R + + + Q + +Y++ + +N
Sbjct: 193 IPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYLQELAFEKMN 252
Query: 314 EAVT 317
+ +T
Sbjct: 253 KVIT 256
>gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 444
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 34/253 (13%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHRV 147
VSGGPDS+AL G G+ + VDHGLR EES+ +A V
Sbjct: 28 VSGGPDSVALLRALVGL---GYEPA-----------VLHVDHGLRGEESRGDAEFVRELC 73
Query: 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207
+G+RCE VR L+GR LQE AR RYR+ +V + + + H+ADD AE
Sbjct: 74 RGLGLRCE-VRSLRLEGR---AGLQERARRERYRIAGEVAGRLGASAVAVGHNADDVAET 129
Query: 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGNRDWVEDPTNR 265
+L L+R SG+ GL+G I C + IL + + + D TN
Sbjct: 130 LLLNLARGSGLRGLSG------IPPVRGRVCRPLIERTRAEILGYLEALGQGYRVDSTNL 183
Query: 266 SPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 321
P + RNR+R+ L +L + ++ +A + R + +E + + ++ E +
Sbjct: 184 LPKYARNRVRLEVMPVLEELHPGAVRNMARAA-ALLREDLAALEELAAGVVREEGG--EA 240
Query: 322 GYAVIDLEILNPS 334
G +V +L+ L P+
Sbjct: 241 GMSVAELDGLPPA 253
>gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
Length = 480
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E + ++ VDH R +ES
Sbjct: 23 LEKHSTIVVGVSGGPDSLALLYYLL--------EKREEKKL--KIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A S Y + I C+
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGYVIRPLLAVTKEEINAYCKRLGV 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N ++ RNR+R
Sbjct: 193 TPRMDPSNEKEVYTRNRLR 211
>gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS
6054]
gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 484
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 19/204 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DS+ L L + + + + N A + AIT+DHG R S EEA V
Sbjct: 25 RVLVALSGGVDSICLTYLLSQY-SRLYCNNAIA------INAITIDHGYRSGSNEEAKAV 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
V G++ + + ++ + + +E AR RY F++ C Q L +AH+ +D
Sbjct: 78 GKLVEKWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLND 137
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDD----------LKNHSILLICQ 252
Q E FI RL NS + GLAG+ A +S S S + + I+ C+
Sbjct: 138 QLETFIQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKERISVIRPLLSFEKSEIIDTCK 197
Query: 253 GGNRDWVEDPTNRS-PLFVRNRIR 275
N W ED TN L RN +R
Sbjct: 198 QQNISWFEDSTNMDINLTKRNYLR 221
>gi|423461674|ref|ZP_17438470.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X2-1]
gi|401135336|gb|EJQ42935.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X2-1]
Length = 476
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
Length = 283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVKYCNELNL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
Length = 425
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 70 FSRRMAMAGLKPHH--RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
F+ MA G P H +A+ VSGG DSMAL VL W+ ++ +
Sbjct: 17 FAPVMAALGPWPGHGVPVAVAVSGGADSMALAVLARQWRPD--------------VVGLV 62
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR ES+ EA R+S +G+ ++ + L+ P+ E AR MRY C
Sbjct: 63 VDHGLRAESRREAEQTIGRLSALGLSARLLVLEGLERGPRM---AERARRMRYAALSAAC 119
Query: 188 IQHQIGVL--LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+IG L L+AHHA DQAE ++R SG GLAGMA + +
Sbjct: 120 --REIGALDLLVAHHAGDQAETVMMRQHAASGDDGLAGMALVTPMHDVRLVRPLLSFAKP 177
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
++ + WVEDP+N R R R +L
Sbjct: 178 ALYATVRAAGLAWVEDPSNADLRTGRARARQAL 210
>gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
Length = 458
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 19/285 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R +ESK++ V
Sbjct: 21 VVVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGKESKQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ +L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R S + G AGM + + I C+ D
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGMQPKRPYADGFIIRPFLAVTKEEINRYCKLHGLTPRID 189
Query: 262 PTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
P+N + RNR R + + + + Q ++Y+E + + ++N+ +
Sbjct: 190 PSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTGVMNKVMRK 249
Query: 319 MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST 363
Q +ID + +I + + L+L ++ + P S
Sbjct: 250 KLQNEILIDRDCF--LRIRKPLQRRGIQLILNYLYKEIPPTLSSA 292
>gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
gi|336233608|ref|YP_004586224.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
C56-YS93]
gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
gi|335360463|gb|AEH46143.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
C56-YS93]
Length = 462
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 90/200 (45%), Gaps = 14/200 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +GVSGGPDS+AL L W ++ L+A VDH R ++S+
Sbjct: 15 LTPDSTVIVGVSGGPDSLAL--LHFFWSI--------RQKWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H GI CE + D + +Q L QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCQTRGIICEAAQID-VPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+ HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYIIRPFLAISRAHIDAYCEKHQ 183
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
D +N + RNR R
Sbjct: 184 ITPRHDASNDKDDYTRNRFR 203
>gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
Length = 283
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LEEHSTIVVGVSGGPDSLALLYYLLEKRE----------EKKLKIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A S Y + I C+
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGYVIRPLLAVTKEEINAYCKRLGV 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N ++ RNR+R
Sbjct: 193 TPRMDPSNEKEVYTRNRLR 211
>gi|423480161|ref|ZP_17456873.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-1]
gi|402423664|gb|EJV55870.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-1]
Length = 476
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
gi|386006948|ref|YP_005925226.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
gi|386025528|ref|YP_005946304.1| putative tRNA(ile)-lysidine synthase (N-terminal region)/ putative
hypoxanthine/guanine phosphoribosyltrasferase
(C-terminal region), partial [Listeria monocytogenes M7]
gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
gi|336022109|gb|AEH91246.1| putative tRNA(ile)-lysidine synthase (N-terminal region)/ putative
hypoxanthine/guanine phosphoribosyltrasferase
(C-terminal region) [Listeria monocytogenes M7]
Length = 648
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + + + + ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVPK--------EAISVAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + I L
Sbjct: 68 EQNVVETFCERHGIPFYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ YA + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKREVKGGYAIRPFLPITKAEIIAYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|423399617|ref|ZP_17376790.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-2]
gi|401658223|gb|EJS75720.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-2]
Length = 476
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
Length = 464
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP 186
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
DP+N + RNR R + L + Q ++E + ++ +N+
Sbjct: 187 RRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKV 246
Query: 316 V 316
+
Sbjct: 247 M 247
>gi|423572794|ref|ZP_17548913.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-D12]
gi|401216718|gb|EJR23424.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-D12]
Length = 476
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
LK I +GVSGGPDS+AL L T F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKRATKQFE-----------IVVAHVDHMFRGDES 67
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 68 HEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYV 127
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 128 ALGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLK 187
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 188 IIPRIDPSNKKEVYTRNRLR 207
>gi|448117252|ref|XP_004203210.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
gi|359384078|emb|CCE78782.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
Length = 490
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSM L L + W A ++ GL AIT+DH R+ES EA ++
Sbjct: 24 LCIALSGGVDSMCLTYLLSRW----------AKKYRVGLKAITIDHSYRKESANEAALIG 73
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
V ++ E+ + ++ + +E AR RY +F +VC + +AH DDQ
Sbjct: 74 RCVEKWCVQHEVHKIEYGTDIKSITNFEEVARTRRYEIFDRVCRVSNASHICVAHTLDDQ 133
Query: 205 AELFILRLSRNSGVLGLAGM 224
E F+ RL NS + GLAG+
Sbjct: 134 LETFVQRLRHNSSLFGLAGL 153
>gi|448236369|ref|YP_007400427.1| tRNA(Ile)-lysidine synthase [Geobacillus sp. GHH01]
gi|445205211|gb|AGE20676.1| tRNA(Ile)-lysidine synthase [Geobacillus sp. GHH01]
Length = 464
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMELSP 186
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
DP+N + RNR R + L + Q ++E + ++ +N+
Sbjct: 187 RRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKV 246
Query: 316 V 316
+
Sbjct: 247 M 247
>gi|365164163|ref|ZP_09360248.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|363613178|gb|EHL64700.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 7_6_55CFAA_CT2]
Length = 279
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 MPRIDPSNKKEVYTRNRLR 207
>gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 480
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Bacillus anthracis str. A2012]
gi|386733931|ref|YP_006207112.1| tRNA(Ile)-lysidine synthase [Bacillus anthracis str. H9401]
gi|384383783|gb|AFH81444.1| tRNA(Ile)-lysidine synthase [Bacillus anthracis str. H9401]
Length = 480
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
Length = 464
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP 186
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
DP+N + RNR R + L + Q ++E + ++ +N+
Sbjct: 187 RRDPSNEEDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKV 246
Query: 316 V 316
+
Sbjct: 247 M 247
>gi|428173783|gb|EKX42683.1| hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712]
Length = 578
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 21/207 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV---DHGLREESKEEAN 141
+ +GVSGG DS AL +L Q E GE +G L+I V DHGLR ESKEEA
Sbjct: 90 LVVGVSGGSDSTALMLLL-----DEVRQEHEGGE--EGQLSINVVHFDHGLRAESKEEAK 142
Query: 142 IVSHRVSDMGIRCEIVRCDWLDG---RPKQGHLQEAARDMRYRLFQKVC--IQHQ----I 192
V D G+ + D D R G +QE R R ++ +V I+ Q
Sbjct: 143 FVEGLARDRGMPFYMQALDEADAARFRENSGGMQEYTRIWRRKVMGEVAAKIKEQSRPDT 202
Query: 193 GVLLI-AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
V L+ AHH+DDQ E +++L R + + L GM + + D+ ++
Sbjct: 203 KVYLVSAHHSDDQLETILMKLLRGAHISKLHGMKYKDDLDPPMLRPLL-DISKQELVRYL 261
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ +DW ED +N + RN++R+ L
Sbjct: 262 KDLQQDWREDSSNHESTYKRNKVRIQL 288
>gi|423608112|ref|ZP_17584004.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD102]
gi|401238609|gb|EJR45045.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD102]
Length = 476
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
Length = 480
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 480
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 480
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
Length = 480
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNEINL 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames]
gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne]
gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066]
gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western
North America USA6153]
gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B]
gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum]
gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia
94]
gi|421510680|ref|ZP_15957569.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. UR-1]
gi|61216616|sp|Q81VX7.1|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames]
gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
gi|401819301|gb|EJT18482.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. UR-1]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
Length = 480
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|423621417|ref|ZP_17597195.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD148]
gi|401263446|gb|EJR69571.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD148]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL + A + ++ ++A VDH R +ES E+ V
Sbjct: 25 IVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESHEDLQFV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ CE +R + + + G + Q AAR+ RY +++ ++ + + HH D
Sbjct: 75 QDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGD 134
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+A + Y + I+ C N DP
Sbjct: 135 DQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNEINLIPRIDP 194
Query: 263 TNRSPLFVRNRIR 275
+N+ ++ RNR+R
Sbjct: 195 SNKKEVYTRNRLR 207
>gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 344
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
+F R A LK +A G SGGPDS AL VL + N EA +
Sbjct: 22 SFVHRQAGVSLKGKKVLA-GFSGGPDSAAL-VLAMHYLAPSLNMKLEAA---------YL 70
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKV 186
DHGLR E+ E+ +V S + ++ + R + L GR + G ++E AR +RYR V
Sbjct: 71 DHGLRREAGEDLALVQDTCSQLSMKLHLGRSNVSRLAGRGRGG-IEETARRLRYRYLHGV 129
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +L HH +D AE ++RL R +G GL+GM + + +
Sbjct: 130 ARKTGADYVLTGHHLNDLAEDILMRLQRGTGWPGLSGM--RAYVPERRILRPLLMIPRKC 187
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
I+ + + +V D TN+ F+RNR+RMSL
Sbjct: 188 IMDFLETAGQGYVLDATNKDKTFLRNRVRMSL 219
>gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
gi|376264091|ref|YP_005116803.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus F837/76]
gi|423554003|ref|ZP_17530329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ISP3191]
gi|61216513|sp|Q6HPV4.1|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
gi|364509891|gb|AEW53290.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus F837/76]
gi|401182084|gb|EJQ89226.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ISP3191]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423376662|ref|ZP_17353946.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1O-2]
gi|423548776|ref|ZP_17525134.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB5-5]
gi|401174307|gb|EJQ81518.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB5-5]
gi|401641301|gb|EJS59021.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1O-2]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL + A + ++ ++A VDH R +ES E+ V
Sbjct: 25 IVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESHEDLQFV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ CE +R + + + G + Q AAR+ RY +++ ++ + + HH D
Sbjct: 75 QDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGD 134
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+A + Y + I+ C N DP
Sbjct: 135 DQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELNLIPRIDP 194
Query: 263 TNRSPLFVRNRIR 275
+N+ ++ RNR+R
Sbjct: 195 SNKKEVYTRNRLR 207
>gi|384177969|ref|YP_005563731.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|345870097|ref|ZP_08822052.1| tRNA(Ile)-lysidine synthase [Thiorhodococcus drewsii AZ1]
gi|343922484|gb|EGV33186.1| tRNA(Ile)-lysidine synthase [Thiorhodococcus drewsii AZ1]
Length = 448
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 100/203 (49%), Gaps = 18/203 (8%)
Query: 75 AMAGLKPHHRIALGVSGGPDS-MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
++A L P R + SGG DS + LC L+ ++ AGE L+A+ VDHGL
Sbjct: 12 SLADLAPVSRYWVAYSGGLDSEVLLCALSEA-------RDRLAGE----LVAVHVDHGLH 60
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQI 192
ES A+ R ++G+ CE+ R + P +G EA AR+ RY F V +
Sbjct: 61 PESGRWADRCRARCVELGVTCEVRRFRLV---PMRGESLEALAREARYGAF--VDLLGSG 115
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+LL AHH DDQAE +L L R SGV GLA M + DL +++
Sbjct: 116 DLLLTAHHRDDQAETLLLALLRGSGVQGLAAMPRCMPFGAGRLVRPLLDLPRSALVDFAA 175
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
+W+EDP+N + F RN +R
Sbjct: 176 SRGLEWIEDPSNAARTFDRNYLR 198
>gi|423439756|ref|ZP_17416662.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X2-1]
gi|423462828|ref|ZP_17439596.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-1]
gi|423532184|ref|ZP_17508602.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB2-9]
gi|402421799|gb|EJV54046.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X2-1]
gi|402422956|gb|EJV55177.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-1]
gi|402465262|gb|EJV96944.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB2-9]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL + A + ++ ++A VDH R +ES E+ V
Sbjct: 25 IVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESHEDLQFV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ CE +R + + + G + Q AAR+ RY +++ ++ + + HH D
Sbjct: 75 QDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGD 134
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+A + Y + I+ C N DP
Sbjct: 135 DQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNEINLIPRIDP 194
Query: 263 TNRSPLFVRNRIR 275
+N+ ++ RNR+R
Sbjct: 195 SNKKEVYTRNRLR 207
>gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
Length = 467
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRRKGSFQ-----------LIAAHVDHMFRGEESFVDLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ GI E R + K+ HL Q AAR+ RY F+++ +++ + +AHH
Sbjct: 69 EAYCKEQGIPFESARIQ-VTQYAKENHLNKQAAARECRYAFFRQLMERYKAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R + +GLAG+ + +L C+ + +V D
Sbjct: 128 DDQVETMMMRLARGTVGIGLAGIQAKRPYQDGWLIRPLIGYSKDDVLTACEQAHIPYVID 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + ++RNRIR + + + Q V Y++ + +N+ +T
Sbjct: 188 QSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEQYLQALTKEQMNQVIT 246
>gi|395785057|ref|ZP_10464791.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th239]
gi|423718042|ref|ZP_17692232.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th307]
gi|395425569|gb|EJF91730.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th239]
gi|395426475|gb|EJF92602.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th307]
Length = 448
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 13/197 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS AL L + ++Q + +LA+TVDH LR ES EA V+
Sbjct: 21 VIVAISGGSDSTALLFLLRDF-LAKWDQAPK-------ILAVTVDHRLRPESALEAEQVA 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI + V C W+DGR + G L AR RY L + ++L H +DQ
Sbjct: 73 SLCQKIGIEHQTV-C-WVDGRGQSG-LSHQARIARYGLLVSQAEKSNADMILTGHTLNDQ 129
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAY-SCHDDLKNHSILLICQGGNRDWVEDPT 263
AE + +RL R G GLA M S + ++K + +DW++DPT
Sbjct: 130 AETYQMRLYRGKG-RGLACMPRESLLMRKIRLIRPLLNIKREELRHYLLTKKQDWIDDPT 188
Query: 264 NRSPLFVRNRIRMSLGD 280
N +P + R RIR SL +
Sbjct: 189 NENPHYERVRIRQSLSE 205
>gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
Length = 475
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 19/215 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGGPDS+AL W E + L+ + HG+R ES +E +V
Sbjct: 19 RILVAVSGGPDSIAL------WHILDRYAREEKSDI--SLVISHIHHGVRRESDQEEEMV 70
Query: 144 SHRVSDMGIRCEIVRC---DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R D+ D K QEAAR+ RY FQ+ ++Q ++ AHH
Sbjct: 71 RKLAGKFETELSVHRFKAKDYADKSKKS--FQEAAREWRYARFQEDKDKYQCHLIATAHH 128
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSS-QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
DQAE + RL R SG GL G+ S+ +I + IL C+ +
Sbjct: 129 LGDQAETLLYRLLRGSGTSGLGGIYPSAGEIIRPLL-----TVSKQEILAYCEAEGLSFA 183
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
D +N P++VRN+IR+ L + ++ S ++ +
Sbjct: 184 LDQSNFEPVYVRNKIRLELLPILKKNYNSRIEEAL 218
>gi|384517343|ref|YP_005704648.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
Length = 462
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 18/285 (6%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG+ + +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAGIKERRPFATGELIRPLLIYPKEELY 171
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
Q + ED TN++ ++RNR+R + L + F ++ + + + +++
Sbjct: 172 QFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQHFAQEFIQ 231
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 349
++EAV QG+ + +L + + FL+ F L
Sbjct: 232 EQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 454
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L+P ++ LGVSGGPDSMAL + T E GL + ++HGLR E+
Sbjct: 15 LEPGKKVLLGVSGGPDSMALLHIMHKLTT----------EMDLGLAVLHLNHGLRPEAAA 64
Query: 139 EANIVSHRVSDMGI----RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E V + GI R +R L ++ L+EA RD RYR F + + Q
Sbjct: 65 EEEFVREHCRNWGIDFYSRQADIRALALQ---EKKTLEEAGRDCRYRYFFEQLEELQADY 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQG 253
+ AHH DDQAE +L L R SG+ GL G M Q+ L I+
Sbjct: 122 IATAHHQDDQAETVLLHLLRGSGLKGLRGIMPRKGQLLRPLL-----ALSKAEIIHYLDE 176
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSL 278
+ D +N F+RNRIR L
Sbjct: 177 NQIPYCLDQSNNDLKFLRNRIRCEL 201
>gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241]
gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241]
Length = 476
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|365873795|ref|ZP_09413328.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio velox DSM 12556]
gi|363983882|gb|EHM10089.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio velox DSM 12556]
Length = 469
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+A+ G + G I G VDHG+RE S ++ V
Sbjct: 50 KMIVAVSGGGDSVAM---------GALLRRFWGGTQIWG----HVDHGIREVSHRDSQFV 96
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
GIRC + R + R K ++ AAR +R+ + + G + AH DD
Sbjct: 97 ESLARAWGIRCFVARRNVPCERLKGESIEMAARRVRHEFLEGLARSEGCGYVATAHSMDD 156
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC-HDDLKNHSILLICQGGNRDWVEDP 262
Q E +L L+R +G+ GLAGM + + +L+ + LL +WVED
Sbjct: 157 QVETVMLNLTRGAGIWGLAGMPHRRGPWVRPVIAMRRSELRRYLQLL-----GVEWVEDE 211
Query: 263 TNRSPLFVRNRIRMSL 278
TN+S +VRNR+R+ L
Sbjct: 212 TNQSRDYVRNRVRLDL 227
>gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
Length = 627
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNGEAGEF--IDGLLAITVDHGLREESK 137
H + L VSGG DSMAL L K F +G ID A+ V+HG+R+ S
Sbjct: 33 HRTVGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKID-FRAVIVNHGVRDGSL 91
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW--LDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGV 194
EEA V + +G+ I+ W + G P Q + + AR R++ K C + I
Sbjct: 92 EEAQKVMGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISS 151
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
+L+ HHADDQAE ++RL++ + +GL G+ SS I
Sbjct: 152 ILLGHHADDQAETVLMRLAKGARGVGLLGIKSSSPI 187
>gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 480
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 192
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 193 IPRIDPSNKKEVYTRNRLR 211
>gi|423450083|ref|ZP_17426962.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5O-1]
gi|423542545|ref|ZP_17518935.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB4-10]
gi|401127090|gb|EJQ34820.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5O-1]
gi|401168341|gb|EJQ75606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB4-10]
Length = 476
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARCVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNEINL 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Komagataella pastoris CBS
7435]
Length = 517
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 81 PH---HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
PH R+ + +SGG DSMAL L + ++ +N E ++A+TV+H R+ S+
Sbjct: 18 PHGLPRRVGISLSGGVDSMALTSLLSRYR-DEYNVGVE-------IVALTVNHEYRKGSR 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+EA V V+ + ++ +I+ W LD + G+ + AR RY+ QK C + I
Sbjct: 70 QEAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQH 129
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD-----------DLK 243
L + H +DQ E F+LRL +NS + G+ M S S Y +++
Sbjct: 130 LFLGHQLEDQVETFLLRLKQNSTIFGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNIR 189
Query: 244 NHSILLICQGGNRDWVEDPTNR-SPLFVRNRIR 275
I C+ W ED TN S L RN +R
Sbjct: 190 KKDIYSYCRELEVPWFEDHTNTDSSLTFRNLMR 222
>gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
Length = 283
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL + A + ++ ++A VDH R +ES E+ V
Sbjct: 29 IVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESHEDLQFV 78
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ CE +R + + + G + Q AAR+ RY +++ ++ + + HH D
Sbjct: 79 QDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGD 138
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+A + Y + I+ C N DP
Sbjct: 139 DQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELNLIPRIDP 198
Query: 263 TNRSPLFVRNRIR 275
+N+ ++ RNR+R
Sbjct: 199 SNKKEVYTRNRLR 211
>gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055]
Length = 476
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|406909079|gb|EKD49411.1| hypothetical protein ACD_63C00151G0001 [uncultured bacterium]
Length = 333
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI +SGG DS+AL ++ + +F L+A V++G+REE+ E+ N V
Sbjct: 41 RIIAAISGGADSVALFLIL----------DELKKKFKLKLVAAHVNYGVREEAGEDENFV 90
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + CE+++ G+P G+ + ARD+RY F+KV +H + +AH D
Sbjct: 91 RDLAKRLKVECEVLKT----GKPPSSGNFEAWARDVRYDFFEKVREKHNADKIAVAHTRD 146
Query: 203 DQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DQ E +L R +G LGLAGM + +I + D +K + I + G + V D
Sbjct: 147 DQVETVLLNFLRGAGPLGLAGMRYRRGRIIRPFL----DVIKTDLVRYINKRGEKYRV-D 201
Query: 262 PTNRSPLFVRNRIRMSL 278
TN + F RN IR L
Sbjct: 202 KTNINLKFKRNWIRHKL 218
>gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
Length = 434
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 39/278 (14%)
Query: 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
++R RR G P + LGVSGG DSM+L F++ E + L+
Sbjct: 9 RFRGVMERR-GWLGQTP---VLLGVSGGSDSMSLLC--------AFSRLYEPSQ----LV 52
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP-----KQGHLQEAA-RDM 178
+ +DHGLR S + V R +++G+RC I R RP ++G +EAA R +
Sbjct: 53 VLHMDHGLRGASSRDGEFVKKRCAELGVRCVIER------RPVSALSRKGESEEAAGRRL 106
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY L+++ + ++ + H DD AE ++ L+R G+ G+AGM I+ S
Sbjct: 107 RYELYEETAQRFGCRLVALGHTRDDLAENTLMNLARGCGLWGVAGMPEQRDIYIRPLLSF 166
Query: 239 -HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS----ELQAV 293
+L++ L QG + WV+D TN ++ RNR+R + L + S L ++
Sbjct: 167 RRQELRD---FLRAQGWS--WVDDETNALNIYQRNRVRNEVMPLLAREVNSGVVEHLASL 221
Query: 294 ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 331
+ R E S L E V++ +G+ + L L
Sbjct: 222 AEEAQLWRKMQEEQSSALCRE-VSLPQRGWPCLSLSKL 258
>gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
CGDNIH1]
gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
CGDNIH1]
Length = 433
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 113/264 (42%), Gaps = 15/264 (5%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
AF+ MA R+A+ VSGG DS+AL +L A W Q G +LA+ V
Sbjct: 25 AFAEAMARIVPPVSQRVAVAVSGGSDSLALALLAARW------QRSRGGS----VLALVV 74
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES EA + R+ I ++R L + + AR RY C
Sbjct: 75 DHGLRPESAFEAQLTLERLKTQKIEARLLRLTTLQ---RGSAIASRARAARYDALIGACR 131
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I LL+ HH DQAE +R S V+GLAGMA + S+
Sbjct: 132 NEGIIDLLLGHHRQDQAETIWIRQQAGSAVMGLAGMALLREAADIRLLRPLLAFNKASLR 191
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 308
+ + DWVEDP+N SP R + R + + +L + TR E
Sbjct: 192 NVVRDYGLDWVEDPSNHSPAAGRTQAREVVE--RDGPQQDQLLEMAHHAAMTRRVQEQTI 249
Query: 309 SNLINEAVTVMDQGYAVIDLEILN 332
+ + V+ + +GYA++ L+
Sbjct: 250 AQELAATVSFLPEGYALVSGNTLS 273
>gi|238499739|ref|XP_002381104.1| PP-loop family protein [Aspergillus flavus NRRL3357]
gi|220692857|gb|EED49203.1| PP-loop family protein [Aspergillus flavus NRRL3357]
Length = 637
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 96/260 (36%), Gaps = 70/260 (26%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L VSGG DSMAL L+ W+ N + A VDH REES EAN
Sbjct: 39 RRLGLAVSGGADSMALAYLSKQWEKSRPND--------ISVTAFVVDHKAREESTREANT 90
Query: 143 VSHRVSDMGI---------------------RCEIVRCDWLDGRP---KQGHLQEAARDM 178
VS + D+GI + EI+ W + K + AR +
Sbjct: 91 VSQWLQDIGIYASPYTLAFNTKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRL 150
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI-------- 230
R++ K C QI LL+ HH DD E + RL + GLAG+ ++I
Sbjct: 151 RFQALGKACRDRQIEALLMGHHQDDTVETTLWRLCTGAKGAGLAGIPEVTRIPECHGIYG 210
Query: 231 ----FSSYAYSCHDD-------------------------LKNHSILLICQGGNRDWVED 261
SSY S+L C N +V D
Sbjct: 211 VSESGSSYTIPSRPQRSSAQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSD 270
Query: 262 PTNRSP-LFVRNRIRMSLGD 280
PTN P L RN IR L +
Sbjct: 271 PTNFDPTLTPRNAIRSLLAE 290
>gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1]
gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1]
Length = 279
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKRA--------AKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|384049312|ref|YP_005497329.1| tRNA(Ile)-lysidine synthase MesJ [Bacillus megaterium WSH-002]
gi|345447003|gb|AEN92020.1| tRNA(Ile)-lysidine synthase MesJ [Bacillus megaterium WSH-002]
Length = 458
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 17/249 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R +ES+++ V
Sbjct: 21 VIVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGKESQQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ +L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYAFFTHVMKKHKANLLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R S + G AGM + + I C+ D
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGMQPKRPYADGFIIRPFLSVTKEEINRYCKLHGLTPRID 189
Query: 262 PTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
P+N + RNR R + + + + Q ++Y+E + ++++N+ +
Sbjct: 190 PSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTDVMNKVMRK 249
Query: 319 MDQGYAVID 327
Q +ID
Sbjct: 250 KLQNEILID 258
>gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
574]
gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
574]
Length = 475
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
++P + +GVSGGPDS+AL + + E L ++H R EE++
Sbjct: 17 VQPGDLVVVGVSGGPDSVALLHVLYCLRD----------ELGISLHVAHLNHMFRGEEAE 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+A+ V + +GI C + D + ++ HL + AAR+ RYR F+ V L
Sbjct: 67 EDASFVQDLAAKLGIPCTVEERD-VPAYARKNHLSSEVAAREARYRFFRDVLQATGGSKL 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+AHHADDQAEL ++ + R +G+ GL+GM Q++ +++ I C
Sbjct: 126 ALAHHADDQAELVLMNILRGTGLKGLSGMWPVRDQVYIRPML----EVRRKDIEQYCHDH 181
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSL 278
N + D +N +++RNRIR L
Sbjct: 182 NLSFRIDSSNLKNIYLRNRIRQQL 205
>gi|386683444|gb|AFJ19490.1| mitochondrial tRNA(Ile)-lysidine synthetase [Peltigera membranacea]
Length = 596
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DSMAL L T E + A VDH R S +EAN V
Sbjct: 32 RIGIAVSGGVDSMALARLC----TELTKLPEELQRWNFHFTAFVVDHRARPNSSKEANSV 87
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+++ G+R I+ +W Q + + AR +RY+ C +I LL+AHH D
Sbjct: 88 RNQLQTWGLRTIILPLEWSGIHAAQLPNFETQARRLRYQALGNACRDRRIQSLLLAHHED 147
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI 230
DQAE +LRL++ +GL GM ++QI
Sbjct: 148 DQAETLLLRLAQGHRGIGLTGMQETAQI 175
>gi|423399528|ref|ZP_17376724.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-1]
gi|401643584|gb|EJS61280.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-1]
Length = 476
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVAGVSGGPDSLALLYYLLEKRV----------EKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKRLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|423410220|ref|ZP_17387367.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-3]
gi|401649029|gb|EJS66619.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-3]
Length = 476
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVAGVSGGPDSLALLYYLLEKRV----------EKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKRLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C N
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLNV 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
Length = 463
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 27/274 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EES 136
++P R+ + VSGG DS++L +L F+Q A +D L++ +HGLR E +
Sbjct: 15 IEPQQRVLIAVSGGIDSVSLLLL--------FHQ---AAPQMDLKLSVAHYNHGLRGEAA 63
Query: 137 KEEANIVSHRVSDMGIRCEIVRC--DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ V+ +G+ C R W P G EAAR +RY ++V
Sbjct: 64 DEDEAFVAALAGRLGLPCYRERAPQGWWTREP--GTKMEAARRLRYDFLERVAKAAGADR 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+ + HHADDQ E + R SG+ GLAGM + + + + Q
Sbjct: 122 IALGHHADDQVETVLFHFLRGSGLRGLAGMPIRRGPYIRPLLA----FRRAELAAFLQAE 177
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNL 311
++W D +N S L+ RNRIR L L + F + + C Y++ V
Sbjct: 178 RQEWRHDASNDSTLYTRNRIRHELIPLLHDYNPRFAEAIGRMSRLCLDDADYLDEVADRE 237
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 345
+ A ++G LE L P I L +F+
Sbjct: 238 L--ARLTNEEGLDAKGLEAL-PRAIGRRVLRRFI 268
>gi|335033171|ref|ZP_08526540.1| hypothetical protein AGRO_0512 [Agrobacterium sp. ATCC 31749]
gi|333795348|gb|EGL66676.1| hypothetical protein AGRO_0512 [Agrobacterium sp. ATCC 31749]
Length = 443
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + + +A + L A+TVDH LR ES +E
Sbjct: 28 KPTH-ILIAISGGSDSTGLLL--------ALQEAKKADDKGLRLSAVTVDHALRPESADE 78
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GIR R W +P G L EA+R RYRL V + + +++ H
Sbjct: 79 ARKVAMLCAELGIRHATRR--WDGPKPASG-LSEASRLARYRLIADVARETGVDLVVTGH 135
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGN 255
DQ E +R +R+ G LGL+GMA + ++ ++ + L + I +
Sbjct: 136 TIGDQRETVAMRAARSGGSDNLGLSGMA-DAVLYDAHLWIMRPFLACERQVIRDYMSSRS 194
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLG------DLSSCSFKSELQAVISACRRTRSYVEHVC 308
R W++DP+N + + R R+R +L D S+ + L + R R+ V H
Sbjct: 195 RHWLDDPSNENIRYERVRVRQTLPHSPIALDESTAVRRQMLSERTAVFLRERAQVFHAA 253
>gi|378727614|gb|EHY54073.1| cell cycle protein MesJ [Exophiala dermatitidis NIH/UT8656]
Length = 601
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL----LAITVDHGLREESKEE 139
RI + VSGGPDSMAL L E L LA V+H R ES++E
Sbjct: 32 RIGVCVSGGPDSMALAYLLR-----------RVPEIDPSLRIKPLAFIVNHNARAESRKE 80
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A+ VS + + I ++ DW +G + AR RYRL +Q I L +
Sbjct: 81 ADFVSRYLEKLDIESLVLDIDWGNGVDPATLPDFEMQARQARYRLVATAALQRNIRDLFL 140
Query: 198 AHHADDQAELFILRLSRN--SGVLGLAGMAFSSQI 230
HH DDQ E ++RL RN + LGL GMA S I
Sbjct: 141 GHHQDDQVETILMRLIRNPSTSFLGLQGMAEESAI 175
>gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 440
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 22/203 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + R+ L +SGGPDSM L K EF LL V+HG+RE +K
Sbjct: 15 IEKNDRLLLAISGGPDSMYLLYNVIDLKK----------EFNLDLLVCHVNHGIRENAKN 64
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V I I + ++ K+ ++ +EA R +RY F++ +I L
Sbjct: 65 DENFVIDICKKFNINYNIKHVN-MNEYAKENNMSAEEAGRFLRYEFFKENADGRKI---L 120
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AH+ +DQAE + R+ R +GV GLAG + F++ I ++ + I N
Sbjct: 121 TAHNLNDQAETILTRIFRGTGVKGLAGILQFNNNIVRPIL-----NIPRYQIEDYLNKNN 175
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
+V D TN + RNRIR+ L
Sbjct: 176 LKYVIDETNLKSDYTRNRIRIEL 198
>gi|378827374|ref|YP_005190106.1| putative tRNA(Ile)-lysidine synthase [Sinorhizobium fredii HH103]
gi|365180426|emb|CCE97281.1| putative tRNA(Ile)-lysidine synthase [Sinorhizobium fredii HH103]
Length = 444
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 84 RIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEA 140
R+ + +SGG DS L V L A T F DG L+A TVDH LR ES +EA
Sbjct: 21 RVLVAISGGSDSKGLLVALHAALGTAEF----------DGFSLVACTVDHALRPESADEA 70
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V +++GI I C W +P G +Q AAR RY + + + + H
Sbjct: 71 AAVGAFCAELGIPHHI--CRWPGDKPLAG-IQAAARRKRYDMLAEAAAIFRADCIATGHT 127
Query: 201 ADDQAELFILRLSRNSGV-LGLAGMA----FSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
DDQ E +R +R+ G G AGMA + +I+ + + L +C G
Sbjct: 128 LDDQNETIAMRGARDQGQGQGSAGMAAAMLYGRRIWVLRPFLELRRADIRAFLGVCGIG- 186
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
W +DP+N +PLF R R+R SL
Sbjct: 187 --WFDDPSNENPLFERARVRASL 207
>gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773]
Length = 435
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGG DS+ L Q+ + L+ V++ LR ES E+A V+
Sbjct: 18 IIVAVSGGVDSVVLL--------HALRQHLPTAQ----LVVAHVNYHLRAESDEDAAFVA 65
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ E+ C+W D P G ++ AR +RYR F+ + ++Q + +AHHA+DQ
Sbjct: 66 ELAQQYQAQFEL--CEW-DDIPTTG-VEAQARTLRYRFFEALAAKYQTQTIAVAHHANDQ 121
Query: 205 AELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
AE +L+L+R V LAGMA S ++I + + +++ Q W D T
Sbjct: 122 AETVLLKLARGGQVTQLAGMATSRAKIRRPFLR-----ITKQTLMSYAQAHGLTWRHDQT 176
Query: 264 NRSPLFV-RNRIR 275
N P + RNR+R
Sbjct: 177 NDDPDYTARNRLR 189
>gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
Length = 442
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 117/262 (44%), Gaps = 30/262 (11%)
Query: 70 FSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
FSR A G + + +SGG DS+AL L + G Q +
Sbjct: 5 FSRLRAAGCRQGWWGQPEMLIAISGGGDSVALAGLLRRYWRG--RQ-----------VWA 51
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
+DHG+R+ES +A VS S GI C + R R + L+ A R +RY ++
Sbjct: 52 HLDHGIRKESSRDALFVSELASRWGIPCVVERVSLPALRERGESLEMAGRRVRYGFLERT 111
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNH 245
+ + +AH ADDQAE +L L+R +G+ GLAGM A ++L++
Sbjct: 112 ASNASLAFIALAHTADDQAETLLLHLARGTGIWGLAGMPERRGNWVRPLATFRREELRS- 170
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC----SFKSELQAVISACRRTR 301
L +G + WVED +N+ +F+RNR+R L +F QA+ + R+ R
Sbjct: 171 --FLREEGIS--WVEDLSNQDRMFLRNRVRHDLIPWFETHLNPAFSLRAQALAAEARQVR 226
Query: 302 SYV----EHVCSNLINEAVTVM 319
+ E L EA V+
Sbjct: 227 ERLAGEAEQCLRWLAREAFPVL 248
>gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
Length = 440
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 45/283 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + R+ L +SGGPDSM L K EF LL V+HG+RE +K
Sbjct: 15 IEKNDRLLLAISGGPDSMYLLYNVIDLKK----------EFNLDLLVCHVNHGIRENAKN 64
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V I I + ++ K+ ++ +EA R +RY F++ +I L
Sbjct: 65 DENFVIDICKKFNINYNIKHVN-MNEYAKENNMSAEEAGRFLRYEFFKENADGRKI---L 120
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AH+ +DQAE + R+ R +GV GLAG + F++ I ++ + I N
Sbjct: 121 TAHNLNDQAETILTRIFRGTGVKGLAGILQFNNNIVRPIL-----NIPRYQIEDYLNKNN 175
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRSYVEHVCSNL 311
+V D TN + RNRIR+ L F + ++ R + Y++
Sbjct: 176 LKYVIDETNLKSDYTRNRIRIELIPYIEKYFNPNIVNTLNRLSINAREEKIYLD------ 229
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 354
+I+ E N K +D F +L + +FICQ
Sbjct: 230 ------------TIIEKEYRNSFK-DDCFNVTYLKTLDKFICQ 259
>gi|402820450|ref|ZP_10870017.1| hypothetical protein IMCC14465_12510 [alpha proteobacterium
IMCC14465]
gi|402511193|gb|EJW21455.1| hypothetical protein IMCC14465_12510 [alpha proteobacterium
IMCC14465]
Length = 439
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 6/223 (2%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
+TV+HGLR + +E V+ G+ +I+ G +Q AARD+RY L
Sbjct: 63 LTVNHGLRAAAVKETRHVAKLAKAAGLASQILTYK---GTIPDKDIQAAARDIRYGLMSD 119
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
C++H+ L+ AHH +DQAE F+LRL+R SG+ GL+ M D+
Sbjct: 120 WCVKHKADYLVTAHHLEDQAETFLLRLARGSGLDGLSAMQSVGNRNGVTLLRPFLDVPRA 179
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS-ELQAVISACRRTRSYV 304
+ + + DP+N + F R R+R + L+ + L + R +
Sbjct: 180 RLHKTVAKAGLEAISDPSNMNRRFARVRMREKMDLLAEEGLTAPRLAETAGRLLQARKAL 239
Query: 305 EHVCSNLINEAVTVMDQGYAVIDLEIL--NPSKIEDIFLSKFL 345
EHV ++ AV V D A +D L P +I L++ L
Sbjct: 240 EHVADTVMQSAVRVDDYDIAHLDHAALRDQPEEILRRILNRIL 282
>gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium hydrogeniformans]
gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium hydrogeniformans]
Length = 472
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L VSGGPDS+ + L +K F + I +DH R+ES +E + V
Sbjct: 22 KILLAVSGGPDSLTMLQLFFEFKDY----------FAVDIALIHLDHQFRKESGQELDFV 71
Query: 144 SHRVSDMGIRC--------EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ D+ I EI++ + + + AAR R+ F+++ +++ +L
Sbjct: 72 EEKAKDLNINFYTKKVNLPEIIKNENISA-------EAAARRERFNFFKEIYLKNDFDLL 124
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AHH DDQAE +L L R SG+ GL+G+ I D I+ CQ
Sbjct: 125 ALAHHKDDQAETVLLNLFRGSGLRGLSGIEKKININGVQVIHPLLDFSKKEIIKYCQEKK 184
Query: 256 RDWVEDPTNRSPLFVRN 272
+ D +N+ ++ RN
Sbjct: 185 LNPRYDSSNKENIYSRN 201
>gi|374301103|ref|YP_005052742.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
Bay]
Length = 340
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DS AL + A LLA VDHGLR ES ++A
Sbjct: 37 RLLVALSGGADSTALL----------YCLRYLAPRMCISLLAAHVDHGLRPESGQDAAYC 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + + D + G KQ + +EA R RY FQK + +LL AHH
Sbjct: 87 RELCAAQNVPLYEAKLD-VSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNADLLLTAHHL 145
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN------ 255
+D AE ++RL R +G LAGM AY +L LL+ G N
Sbjct: 146 NDLAEDALMRLIRGTGWPELAGMP---------AYDPQRNLLRP--LLLTPGTNLREFLT 194
Query: 256 ---RDWVEDPTNRSPLFVRNRIRMSL 278
W EDP+N P F+RNR+R+ +
Sbjct: 195 NIGASWREDPSNTDPAFLRNRVRLDI 220
>gi|393724218|ref|ZP_10344145.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. PAMC 26605]
Length = 369
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ ++R+ F R ++A P R+AL VSGGPDSMAL L A F
Sbjct: 14 VARFRQDFERVHSLA---PTDRLALAVSGGPDSMALLALAAA-------------AFPGQ 57
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
++A TVDH LR + +EA +V+ + I + + G +Q ARD RY L
Sbjct: 58 IVAATVDHRLRAAAADEALMVTEWCAAHSIPHATLVVEEPIG---TSAVQGRARDRRYAL 114
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ L AHHADDQAE F++R R +GV GL G+ ++ +
Sbjct: 115 LFEWVNGVGAACLATAHHADDQAETFLMRAVRGAGVAGLGGIRARQRVGAVELVRPLLGW 174
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 280
+ + Q +V+DP+N P + R R R L D
Sbjct: 175 RGAELRAFAQAQALPFVDDPSNGDPHYERTRFRALLRD 212
>gi|406859202|gb|EKD12271.1| PP-loop family protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 595
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 85 IALGVSGGPDSMALCVLTA---GWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKEE 139
I L +SGG DSMAL L + KT +Q + + + A VDHG+R S E
Sbjct: 43 IGLAISGGVDSMALAFLCSRLKELKTAAADQPDPKHDILSSVKFQAFVVDHGVRRGSDLE 102
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A VS + GI ++++ W + + + + AR R+R + C + IG L +AH
Sbjct: 103 AQAVSKLLERQGIPTDVLKIQWPEDATLKLNFESLARKYRFRTLGQACSERGIGSLFLAH 162
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSILLICQGGNRD- 257
H DDQAE ++RL GL G+ S+I Y + H+ GG D
Sbjct: 163 HEDDQAETVMMRLVAGHRSKGLMGIKEHSEIPECYGIHGVHES-----------GGIDDP 211
Query: 258 ---WVEDPTNRSP 267
W E P +P
Sbjct: 212 RMRWSEGPPASAP 224
>gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354]
Length = 288
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A TVDHGLR ES +EA V+ +GI +R D G+LQ AR +RY
Sbjct: 13 AATVDHGLRPESADEAAFVARVCEGLGIPHATLRVD-----VSPGNLQANARAVRYEALG 67
Query: 185 KVCIQHQIG--VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS------YAY 236
C Q+G V AHHADDQAE ++RL+R SG+ GLAG+ S F
Sbjct: 68 --CHFEQVGASVFATAHHADDQAETLLMRLNRGSGLAGLAGVRPWSVFFPEGIIEEMVMV 125
Query: 237 SCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD---LSSCSFKSELQAV 293
+ + + + + V+DP+N F R R+R ++ D L + + +
Sbjct: 126 RPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAEWLDPLAMARSARHL 185
Query: 294 ISACRRTRSYVEHVCSNLI 312
A YV V + LI
Sbjct: 186 AEAEEAIGDYVSSVANQLI 204
>gi|389571451|ref|ZP_10161546.1| tRNA(Ile)-lysidine synthase [Bacillus sp. M 2-6]
gi|388428851|gb|EIL86641.1| tRNA(Ile)-lysidine synthase [Bacillus sp. M 2-6]
Length = 467
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 171/415 (41%), Gaps = 62/415 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRRKGSFQ-----------LIAAHVDHMFRGEESFADLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I E R + K+ L Q AAR+ RY F+++ Q+ + +AHH
Sbjct: 69 EAYCKEHEILFESARIQ-VTQYAKENRLNKQAAARECRYAFFRQLMEQYSAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R + +GLAGM + +L C+ +V D
Sbjct: 128 DDQVETMVMRLTRGTVGIGLAGMQAKRPFQEGWLIRPLIGYSKDDVLAACEKEQVPYVID 187
Query: 262 PTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
+N + ++RNRIR + + + Q V Y++ + + +++ +T
Sbjct: 188 QSNHTDDYLRNRIRRHVLPVLKEEAPHVHESFQFVSDMLTEDEQYLQALTKDQMHQVIT- 246
Query: 319 MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKT 378
+Q I+++ + + + L+L ++ + + + H + T
Sbjct: 247 -NQTPKQIEIKTKPLLDLPLPLQRRGIQLILNYLYENTQSAFSNQ-----HILGTLD--- 297
Query: 379 SLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAK 438
+L T G S+D LP L+ + + HC+ E+ L +
Sbjct: 298 -------WLSHTDQPSG-------SLD--LPKGLQAVKSYD-----HCMFTFERSLVIDQ 336
Query: 439 SYSNHLIQDASDKLLLS-----MISDSVPTEAKRFNMLSESTYKNILLLQREEIK 488
SY++HL + ++L L ++S+ VP +A+ N LLQ++ ++
Sbjct: 337 SYTHHLKGELGEELFLPNGQSILVSNHVPKDARNGNYF--------FLLQKDHVR 383
>gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16]
gi|61216430|sp|Q5WAE0.1|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16]
Length = 469
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 85 IALGVSGGPDSMALCVLTAG----WKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ + VSGGPDSMAL + A WK L + V+H LR EES ++
Sbjct: 21 VLVAVSGGPDSMALLAIMANLREKWKLN--------------LFGVHVNHRLRGEESNKD 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLI 197
A +V + +G+ C + D + + H+ Q+AAR +RY++FQ + VLL
Sbjct: 67 AELVQSFSARLGVPCNVKDVD-VAAFKAEHHVGTQQAARALRYQVFQGEMERVHATVLLT 125
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
AHH DD+ E ++L+R + L G+A + + + SI+ C
Sbjct: 126 AHHGDDEVETAFMKLTRGTTPLTKLGIAATRPFANGVLARPLLEETKRSIVAYCHEKAIP 185
Query: 258 WVEDPTNRSPLFVRNRIRMSLG 279
+ D +N S + RNR RM++
Sbjct: 186 YRIDQSNFSDAYTRNRFRMNMA 207
>gi|341038774|gb|EGS23766.1| hypothetical protein CTHT_0004680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 886
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 104/233 (44%), Gaps = 35/233 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGG--FNQNGEAGEFIDGLLAITVDHGLREESKEE 139
H IAL VSGG DSMAL L + + F A + AI +DHGLRE S E
Sbjct: 39 HRPIALAVSGGVDSMALAYLCSKIRPTDCWFKV---ADHPVSSPYAIIIDHGLREGSDVE 95
Query: 140 ANIVSHRVSD-MGIRCEIVRCDWLDGRPKQG-------HLQEAARDMRYRLFQKVCIQHQ 191
A+ VS + + + I+ +++ W P +G +++ AR +RYR +C
Sbjct: 96 ASNVSRLLMEKLKIKSSVIKLRWDPFLPYKGANPNELPNIETLARYLRYRAIGNMCRTQH 155
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
I L AHH DDQ E ++R+ G GL GM S+ I Y DL +
Sbjct: 156 ISSLFTAHHQDDQYETVLMRVLSGHGYRGLQGMRPSTDIPECY------DLHG-----VY 204
Query: 252 QGGNRDWVEDPTNRSPLFV-------RNRIRMSLGDLSSCS-FKSELQAVISA 296
+ G V+D R P +V R ++R + D+ F EL+ + A
Sbjct: 205 RSG---LVDDQRRRHPFYVLRPTGKERKKMRKEMKDMIDPEVFAQELEEGLRA 254
>gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
Length = 434
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
R L SGG DS+ L L + E G +D LA + LR+ ES ++
Sbjct: 20 RFLLACSGGLDSVVLAHLCS-----------ELG--LDFSLA-HCNFKLRDIESDKDERF 65
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + C ++ D L+ +QG +Q AAR MRY F+ + QH I L+ AHHA
Sbjct: 66 VKELAEILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQHSIKTLVTAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSS--YAYSCHDDLKNHSILLICQGGNRDWV 259
DD E F++ LSR +G+ GL G+ + S A+S I+ + N +W
Sbjct: 126 DDNIETFLINLSRGTGIKGLTGIPSKTNEISRPLLAFS------RLQIMEYAKQSNIEWR 179
Query: 260 EDPTNRSPLFVRNRIR 275
ED +N+ ++RN+IR
Sbjct: 180 EDQSNKETKYLRNKIR 195
>gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
gi|254789037|sp|B8IP16.1|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
Length = 339
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 67 REAFSRRM-AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
RE F+RR+ G + L VSGGPDS AL GG + + ++
Sbjct: 10 REEFARRLDRWLGPGAAGGVVLAVSGGPDSTALM--------GGAARL----PPLVPVMV 57
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
TVDHGLR E+ EA V+ +G+ I+ W +P+ LQEAAR RYRL
Sbjct: 58 ATVDHGLRPEAAAEAEAVARLAGRLGLPHRIL--AWTGPKPRT-RLQEAARAARYRLLLD 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ + LL AH DDQAE ++RL SG GL G+ + DL
Sbjct: 115 LAREQGAAALLTAHTLDDQAETVLMRLCAGSGPAGLGGIEPVRHLGGLALVRPFLDLPKA 174
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
++ C +V DP N F R R+R + L++
Sbjct: 175 RLVATCAAEGWPFVVDPGNADARFARGRLRRVMPHLAA 212
>gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes str. 4b H7858]
gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|405748561|ref|YP_006672027.1| bifunctional protein TilS/HprT [Listeria monocytogenes ATCC 19117]
gi|406702991|ref|YP_006753345.1| bifunctional protein TilS/HprT [Listeria monocytogenes L312]
gi|424821948|ref|ZP_18246961.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
A]
gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes]
gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. H7858]
gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
A]
gi|404217761|emb|CBY69125.1| bifunctional protein TilS/HprT [Listeria monocytogenes ATCC 19117]
gi|406360021|emb|CBY66294.1| bifunctional protein TilS/HprT [Listeria monocytogenes L312]
Length = 648
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHINHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|448119675|ref|XP_004203791.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
gi|359384659|emb|CCE78194.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
Length = 490
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSM L L + W A ++ GL AIT+DH R+ES EA ++
Sbjct: 24 LCIALSGGVDSMCLTYLLSRW----------AKKYSVGLKAITIDHSYRKESANEAALIG 73
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
V G++ + + ++ + +E AR RY +F +VC + +AH DDQ
Sbjct: 74 RCVEKWGVQHVVHKIEYGADIESITNFEEVARTRRYEIFDRVCRGSNASHICLAHTLDDQ 133
Query: 205 AELFILRLSRNSGVLGLAGM 224
E F+ RL NS + GLAG+
Sbjct: 134 LETFMQRLRHNSSLFGLAGL 153
>gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426]
gi|375006870|ref|YP_004980499.1| tRNA(Ile)-lysidine synthase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|61216398|sp|Q5L3T3.1|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359285715|gb|AEV17399.1| tRNA(Ile)-lysidine synthase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 464
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E ++RL R S G AG+ Y + I C+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYCRQMGLSP 186
Query: 259 VEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
DP+N + RNR R + L + Q ++E + ++ +N+
Sbjct: 187 RCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFLEELAADALNKV 246
Query: 316 V 316
+
Sbjct: 247 M 247
>gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Magnetospirillum magnetotacticum
MS-1]
Length = 343
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL + TG L T+DHGLR S EA V H
Sbjct: 29 LAVSGGPDSTALMHVAVRAGTGAH------------LRVATIDHGLRPGSAGEARAVGHL 76
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+MG+ I+ + P+ G +QE ARD RYRL ++L AH DDQA
Sbjct: 77 AGEMGLTHAILAWES----PRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-CHDDLKNHSILLICQGGNRDWVEDPTN 264
E ++RL SG GLAGM + + + ++ C+ +V DP+N
Sbjct: 133 ETVLMRLMAGSGPAGLAGMRHERPLAPGIRLARPFLAVPKADLVAYCEAHRLPFVRDPSN 192
>gi|341615974|ref|ZP_08702843.1| ATPase [Citromicrobium sp. JLT1363]
Length = 304
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 24/201 (11%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ VSGGPDS+AL +L G + A TVDHGLR ES+ EA V
Sbjct: 1 MAVSGGPDSLALLLLANAAMPGRVD-------------AATVDHGLRTESRAEAEFVGEV 47
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ +G+ I+ + G+ Q AR RY Q + AHHADDQAE
Sbjct: 48 CAQIGVPHAILSVEL-----AAGNTQAMARAARYEALGLHFTQMGVATFATAHHADDQAE 102
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH------DDLKNHSILLICQGGNRDWVE 260
++RL+R SG+ GLAG+ SS F + + + + I + V+
Sbjct: 103 TLLMRLNRGSGLSGLAGVRPSSIFFPAGVVAEMLLIRPLLGWRREELAAIVAEAGIEPVK 162
Query: 261 DPTNRSPLFVRNRIRMSLGDL 281
DP+N + R RIR + DL
Sbjct: 163 DPSNTDDAYERARIRKASADL 183
>gi|377809049|ref|YP_005004270.1| tRNA(Ile)-lysidine synthetase [Pediococcus claussenii ATCC BAA-344]
gi|361055790|gb|AEV94594.1| tRNA(Ile)-lysidine synthetase [Pediococcus claussenii ATCC BAA-344]
Length = 450
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREES 136
G P + L +SGG DSM L N E + + I V+H LRE+S
Sbjct: 13 GFNPRDTVILAISGGVDSMVLL-----------NVFLELAKQTHMTIVIAHVNHQLREQS 61
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E + + ++ EI W G + ++EAAR+ RY F V ++Q G +
Sbjct: 62 TLEEQFLKEWAAKHHVQIEI--AHWQVGLTIKTSVEEAARNFRYNFFADVMKKYQAGYVA 119
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF-SSYAYSCHDDLKNHSILLICQGGN 255
AH+ +DQAE F+++L R G++G G + F S + I + N
Sbjct: 120 TAHNLNDQAETFLMKLVR-GGIVGELGAIQAKHNFGSGEIIRPMLEFPKKYIKKVAVAEN 178
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
+W ED TN S ++RNRIR
Sbjct: 179 IEWYEDETNGSDDYLRNRIR 198
>gi|405754301|ref|YP_006677765.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2540]
gi|404223501|emb|CBY74863.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2540]
Length = 648
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N + E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVSKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase, partial [Roseomonas cervicalis ATCC
49957]
gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
Length = 236
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAI 126
F+ RMA G A+GVSGGP S+AL +L + GG +LA+
Sbjct: 24 FAARMAPLGPFGDAPGFAVGVSGGPHSLALALLARDFARPLGGR------------VLAL 71
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
DHGLR ES EA ++ GI ++R D P +QE AR R
Sbjct: 72 VADHGLRAESAAEAEWTRRTLAAQGISARVLRLDL----PGGSAVQERARQARLAALLGA 127
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
C + LL+ HA DQAE + R R SG GL+G+A + ++ A L
Sbjct: 128 CAAEGLPFLLLGQHAGDQAETVLFRALRGSGATGLSGIA--PRRAAAEAVILRPLLATPP 185
Query: 247 I----LLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 280
I LL +G + DP+N P F R R+R +L D
Sbjct: 186 IRLEALLAARG--LSPLRDPSNADPRFARVRLRQALAD 221
>gi|383642383|ref|ZP_09954789.1| tRNA(Ile)-lysidine synthetase [Sphingomonas elodea ATCC 31461]
Length = 336
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 119 FIDGLLAITVDHGLREESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAAR 176
F + A TVDHGLR ES EEA V + +G+ C R LDG G+LQ+ AR
Sbjct: 62 FPGVVAAATVDHGLRAESAEEAAFVGAVCARIGVLHTCLPPRPGMLDG----GNLQDRAR 117
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-------AFSSQ 229
MRYR + +AH DD AE F+LR R +GV GLA M A Q
Sbjct: 118 AMRYRCLADWAATAGAPWVAVAHQQDDVAETFLLRARRGAGVGGLAAMLPVRPLGAGGVQ 177
Query: 230 IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
+ L + L+ + G VEDP+NR P F R R+R L S
Sbjct: 178 LVRPLLGWSRARLAD----LVARAGIES-VEDPSNRHPRFDRARMRGLLAQTS 225
>gi|380485342|emb|CCF39419.1| PP-loop family protein [Colletotrichum higginsianum]
Length = 528
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 30/223 (13%)
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
+VE+L + R A R +A + RI L VSGG DSMAL L FN+ E
Sbjct: 44 SVEFLDAV---RAATPPRFPLARISRPRRIGLAVSGGVDSMALAFL--------FNRLRE 92
Query: 116 -------AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-IRCEIVRCDW----LD 163
+ L A +DH LRE S +EA V++ V + IR + +W ++
Sbjct: 93 YMPLMRIVDNPLTKLSAFIIDHRLREGSADEALAVANEVRKLSHIRPHVDTINWKLEGIE 152
Query: 164 GRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222
G P +L+ AR RY ++C ++ L +AHH DDQ E ++RL G GL
Sbjct: 153 GDPAAAPNLESIARRARYHRLGRMCATLRVESLFLAHHQDDQYETVLMRLLAGHGSRGLR 212
Query: 223 GMAFSSQIFSSYAY-----SCH-DDLKNHSILLICQGGNRDWV 259
G+A ++ I Y S H DD + + L+ + +DWV
Sbjct: 213 GIAMAANIPECYDMHNVYESGHVDDQRAQAPLVSFRPPKKDWV 255
>gi|433543169|ref|ZP_20499581.1| tRNA(Ile)-lysidine synthetase [Brevibacillus agri BAB-2500]
gi|432185528|gb|ELK43017.1| tRNA(Ile)-lysidine synthetase [Brevibacillus agri BAB-2500]
Length = 475
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 17/283 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +GVSGG DS AL + A N+ + G L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGVSGGNDSTALLHILAS-----LNKQYQYGW---KLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
+A S++G + D K G QEA+R++RYR +++V H L
Sbjct: 67 LDAQYAEALCSELGAVFHLFAYDVPSYMKKTGKGSQEASRELRYRFYREVGSAHGASKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN--HSILLICQGG 254
+AHHADDQ E + RL R S + GL GM + S L + CQ
Sbjct: 127 LAHHADDQVETILFRLVRGSRLQGLTGMPQRRMLEDSEMELVRPLLHKTRQELEAYCQEN 186
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNL 311
ED +NRS + RN +R+ + L + ++ + + A + +++ +
Sbjct: 187 RLVPREDSSNRSRKYKRNLLRLDVMPLLAEVNERYREHILDLARAISQDEAFLTRLARER 246
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 354
++EA Q +ID + + + + L+L ++ +
Sbjct: 247 LDEATIEKKQEAFMIDKDKFQTCDV--ALQRRMITLILSYLSK 287
>gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 442
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
S R + + LK RIA+ +SGG DS+ L +T + E + A + H
Sbjct: 3 SSRKSQSKLKSQKRIAVALSGGLDSVVLLDTVCKAQTTYKDSPTE-------IWAFHIHH 55
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH 190
GL++ + + I + R L QG+++ AR RY ++C+++
Sbjct: 56 GLQKPADDWLIFCEKLAKKYKIGFDF-RLLHLAQDTDQGNVEARARAGRYEALAELCVEY 114
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHS--- 246
IG LL+AHH +DQAE +L+L R +GV GL+GM ++ + + L N S
Sbjct: 115 GIGDLLLAHHQNDQAETVLLQLLRGAGVAGLSGMPHERELTHDQSRITLWRPLLNQSRAE 174
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ + + W+EDP+N+ F RN IR +
Sbjct: 175 LEVYAKANKLKWIEDPSNQKTQFRRNAIRKQI 206
>gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 487
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 81 PHHRIALGV--SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
P R +L V SGGPDS L L + + + I + TVDH L+++S +
Sbjct: 18 PSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVI----SFTVDHDLQKKSSD 73
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDG----RPKQGHLQE-AARDMRYRLFQKVCIQHQIG 193
AN +G+ + W +G RP G + E ARD RY L + + +
Sbjct: 74 MANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADVD 133
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM------AFSSQIFS-SYAYSCHD------ 240
VL + HHADDQ E ++RL S LG GM + I S +++ H
Sbjct: 134 VLAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMGAGIDERSLSWAGHKGMSKWI 193
Query: 241 -----DLKNHSILLICQGGNRDWVEDPTNRSP-LFVRNRIR 275
D+ IL C+ N +++ DPTN P + +RN IR
Sbjct: 194 VRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIR 234
>gi|407451693|ref|YP_006723417.1| ATPase of the PP-loop superfamily implicated in cell cycle control
[Riemerella anatipestifer RA-CH-1]
gi|403312677|gb|AFR35518.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-1]
Length = 427
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 32/253 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSMAL L ID + I +++ LR E+S ++A
Sbjct: 21 HQFLLAVSGGADSMALAHLMTQ---------------IDAKIEIAHINYKLRGEDSDKDA 65
Query: 141 NIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+V I C I+ D +P G +Q AR++RY+ F+ + + L+ A
Sbjct: 66 ALVQEFCEKHHIPFHCYIISEK--DQKP-SGSIQLWARELRYQFFRNIMKTRNLSYLVTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HH +DQ E FI+ LSR SG+ GLAG+ + ++I D I + +
Sbjct: 123 HHLNDQLETFIINLSRGSGIKGLAGIPNNENEILRPLL-----DFSKEEIYHFAEAYSIA 177
Query: 258 WVEDPTNRSPLFVRNRIRMS-LGDLSSCS--FKSELQAVISACRRTRSYVEHVCSNLINE 314
+ ED +N+ ++RN+IR S + +L + F + I + +S++ + I E
Sbjct: 178 FREDKSNQKQDYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSKAKSFINQQIKDKIKE 237
Query: 315 AVTVMDQGYAVID 327
+++ + +ID
Sbjct: 238 -ISISTESETIID 249
>gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28]
Length = 275
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W N N E I ++H LRE + +E +V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAKEQRVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q L+E AR +RY F+KV + I L++AHHA
Sbjct: 73 ETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL R S +G +G+ ++ A + I+ Q + D
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHELAYEID 191
Query: 262 PTNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 192 ESNTSQEYTRNRYRAQL 208
>gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. F2365]
gi|405751435|ref|YP_006674900.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2378]
gi|424713083|ref|YP_007013798.1| Bifunctional protein tilS/hprT [Listeria monocytogenes serotype 4b
str. LL195]
gi|61216556|sp|Q724J4.1|TILS_LISMF RecName: Full=Bifunctional protein TilS/HprT; Includes: RecName:
Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
Full=Hypoxanthine-guanine phosphoribosyltransferase;
Short=HGPRT; Short=HGPRTase
gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. F2365]
gi|404220635|emb|CBY71998.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2378]
gi|424012267|emb|CCO62807.1| Bifunctional protein tilS/hprT [Listeria monocytogenes serotype 4b
str. LL195]
Length = 648
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVETFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|399046103|ref|ZP_10738640.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. CF112]
gi|398055888|gb|EJL47938.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. CF112]
Length = 475
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 17/283 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +GVSGG DS AL + A N+ + G L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGVSGGNDSTALLHILAS-----LNKQYQYGW---KLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
+A S++G + D K G QEA+R++RYR +++V H L
Sbjct: 67 LDAQYAEALCSELGAVFHLFAYDVPSYMKKTGKGSQEASRELRYRFYREVGSAHGASKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN--HSILLICQGG 254
+AHHADDQ E + RL R S + GL GM + S L + CQ
Sbjct: 127 LAHHADDQVETILFRLVRGSRLQGLTGMPQRRMLEDSEMELVRPLLHKTRQELEAYCQEN 186
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNL 311
ED +NRS + RN +R+ + L + ++ + + A + +++ +
Sbjct: 187 RLVPREDSSNRSRKYKRNLLRLDVMPLLAEVNERYREHILDLARAISQDEAFLTRLARER 246
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 354
++EA Q +ID + + + + L+L ++ +
Sbjct: 247 LDEATIEKTQEAFMIDKDKFQTCDV--ALQRRMITLILSYLSK 287
>gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
gi|404279769|ref|YP_006680667.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2755]
gi|404285586|ref|YP_006692172.1| bifunctional protein TilS/HprT [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
gi|404226404|emb|CBY47809.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2755]
gi|404244515|emb|CBY02740.1| bifunctional protein TilS/HprT [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 648
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|347760556|ref|YP_004868117.1| Ile-tRNA lysidine synthase [Gluconacetobacter xylinus NBRC 3288]
gi|347579526|dbj|BAK83747.1| Ile-tRNA lysidine synthase [Gluconacetobacter xylinus NBRC 3288]
Length = 429
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 103/223 (46%), Gaps = 24/223 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DSMAL VL W+ ++ + VDHGLR ES+ EA
Sbjct: 34 VAVAVSGGADSMALAVLARQWRPD--------------VVGLVVDHGLRAESRREAEQTI 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL--LIAHHAD 202
R+S +G+ ++ L G + + E AR MRY C +IG L L+AHHA
Sbjct: 80 SRLSALGMSAHLLV---LAGLERGTRMAERARRMRYAALFAAC--REIGALDLLVAHHAG 134
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE ++R SG GLAGMA ++ + ++ + WVEDP
Sbjct: 135 DQAETVMMRRRAASGDDGLAGMALATPMLDVRIVRPLLPFTKPALYATVRAAGVAWVEDP 194
Query: 263 TNRSPLFVRNRIRMSL---GDLSSCSFKSELQAVISACRRTRS 302
+N R R R +L G+L + L+A + R R+
Sbjct: 195 SNADLRTERARARQALAQDGELDAALKTQALRAGQARMARDRA 237
>gi|346991830|ref|ZP_08859902.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. TW15]
Length = 417
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 142/331 (42%), Gaps = 38/331 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DS AL L A + E ++ L A TVDHGLR ES EA
Sbjct: 23 RLGVAVSGGSDSTALMRLLA---------DIAQQEQLE-LYASTVDHGLRPESASEALAA 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI EI++ G + G+LQ+ AR RYRL + + + H ADD
Sbjct: 73 AALAQRWGIPHEILKWQ---GWDRAGNLQDQARRARYRLLGAWAKAKGLQAIALGHTADD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQ-----IFSSYAYSCHDDLKNHSILLICQGGNRDW 258
QAE ++RL+R +GV GL+ M+ S + + + + L+++ L Q + W
Sbjct: 130 QAETVLMRLARAAGVSGLSAMSGSRKEGEIALLRPLLTTTRERLRDY---LTAQ--DISW 184
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLINEAVT 317
++DP+N+ F R + R L L +E L V + R + +
Sbjct: 185 IDDPSNQDHRFDRIKARQVLSGLDQIGITAENLSRVAENMAQAREALARYTQESAVRCIQ 244
Query: 318 VMDQGYAVI--DLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
V D + D E L E+I +A VL +I P R + ++ I +
Sbjct: 245 VSDGDLCLDRGDFETLP----EEIRRRLVIASVL-WIAGAGYPPRHNAVDQVMDAISS-- 297
Query: 376 CKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 406
+ T GC L P G K +C ++
Sbjct: 298 -GQTTTLGGCILVP----EGKKTWICRELNA 323
>gi|452838996|gb|EME40936.1| hypothetical protein DOTSEDRAFT_56007 [Dothistroma septosporum
NZE10]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
R + +KP R+ L +SGG DSMAL LT K E F VDH
Sbjct: 22 RGLFPTNIKPQ-RLGLAISGGVDSMALATLTKIIK--------EDSTFPHTFTGFIVDHR 72
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQ-GHLQEAARDMRYRLFQKVCIQ 189
LRE+S EEA +V+ + + I I+ DW G P++ + + AR +RY+ C
Sbjct: 73 LREDSSEEAILVAKSLKQLDIEPMILNLDWNGHGDPRELNNFESVARTLRYQALGIACAA 132
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
+I L+ HHADDQAE I R LGL G++ + I
Sbjct: 133 KKIPHLIFGHHADDQAETVISRAIDGYTGLGLRGISSHAPI 173
>gi|406027388|ref|YP_006726220.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri CD034]
gi|405125877|gb|AFS00638.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri CD034]
Length = 460
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 106/252 (42%), Gaps = 17/252 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L L + ++ VDH LRE+S EE +S
Sbjct: 23 VVVAVSTGVDSMTLLYLLQHLPRAVRPK----------IIVAYVDHQLREQSVEETRYIS 72
Query: 145 HRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S+ G+ + + W D P G ++ AAR RYR F++V + LL AHH DD
Sbjct: 73 NYCSEYGLLLK--QAVWSKDDHPTTG-IEAAARTFRYRFFKRVLKETGSTCLLTAHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E I++L R + L G+ + + + Q W ED T
Sbjct: 130 LVETVIMKLVRGGQLASLTGIRETRSFADAKMIRPLLSFSKQQLESFAQTTGLRWFEDET 189
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEHVCSNLINEAVTVMD 320
N+ P RNRIR + L L V+S + + ++ + LI+ AV +
Sbjct: 190 NQQPAVERNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIKFLIQPLIHSAVGFSE 249
Query: 321 QGYAVIDLEILN 332
+ A IDL+ L
Sbjct: 250 KHRAEIDLDSLK 261
>gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
Length = 464
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 15/237 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L + + E+ L+A VDH R ES+EE V
Sbjct: 21 VIVGVSGGPDSLALLHLLSSLRD----------EWKLQLVAAHVDHMFRGRESEEEMEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H ++ I CE V+ D + + G QEAAR+ RY F ++ ++Q + + HH D
Sbjct: 71 KHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKYQAQYVALGHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+ SY + I C+ DP
Sbjct: 131 DQVETILMRLVRGSTSKGYAGIPVKRPFHGSYLIRPFLAVSRAEIEDYCKKEGLTPRRDP 190
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+N + RNR R + L + Q ++E + ++ +N+ +
Sbjct: 191 SNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFLEELATDALNKVM 247
>gi|410582356|ref|ZP_11319462.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
13965]
gi|410505176|gb|EKP94685.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
13965]
Length = 632
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID------G 122
A RR+ AG R+ + VSGG DSM L + +D G
Sbjct: 27 AGRRRLLEAG----QRVLVAVSGGRDSMVLL------------------DVLDRLRPVLG 64
Query: 123 LLAITV---DHGLREESKEEANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARD 177
L A+ V DHGLR +S +A V + + G+ C V RP + L+E AR
Sbjct: 65 LAALGVAHVDHGLRPDSAGDARWVEEQAAARGLPFLCRRVHI-----RPGRRSLEEGARL 119
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR + Q + +AHHA DQAE ++RL +GV GLAGM + F +
Sbjct: 120 ARYRALAAMARQFGAQRVALAHHAGDQAETVLMRLLAGAGVRGLAGMPWRRGPFVRPLLA 179
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL 290
L G W +DP+N+ F+RNRIR L L F +
Sbjct: 180 TEPALLAAYAAARGLG----WRDDPSNQDLTFLRNRIRHRLLPLLEAEFNPRV 228
>gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
Length = 464
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 15/237 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L + + E+ L+A VDH R ES+EE V
Sbjct: 21 VIVGVSGGPDSLALLHLLSSLRD----------EWKLQLVAAHVDHMFRGRESEEEMEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H ++ I CE V+ D + + G QEAAR+ RY F ++ ++Q + + HH D
Sbjct: 71 KHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKYQAQYVALGHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S G AG+ SY + I C+ DP
Sbjct: 131 DQVETILMRLVRGSTSKGYAGIPVKRPFHGSYLIRPFLAVSRAEIEDYCKKEGLTPRRDP 190
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+N + RNR R + L + Q ++E + ++ +N+ +
Sbjct: 191 SNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFLEELATDALNKVM 247
>gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
Length = 468
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLL 124
YR+ S +KP+ +I + +SGGPDS +C+L + E E ++ +
Sbjct: 2 YRKVLSYIKDNNLIKPNDKILIALSGGPDS--ICLLNVLF---------ELREKLNISIA 50
Query: 125 AITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYR 181
A ++H LR E++ E+ V + +DMGI+C + R D ++ K+ L + A R+ RY
Sbjct: 51 AAHLNHLLRGEDAFEDERYVINTCNDMGIKCFVKRVD-INAYSKESKLSSEMAGRNARYD 109
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
F ++ + + AH+A+DQAE + RL R +G+ GL G+ S DD
Sbjct: 110 FFDEILEKEGFNKIATAHNANDQAETVLFRLMRGTGLEGLGGIRAS-----------RDD 158
Query: 242 LKNHSILLICQGGNRDWVE--------DPTNRSPLFVRNRIRMSLGDLSSCSFKSE---- 289
IL + + ++V+ D TN ++ RN+IR+ + +F +
Sbjct: 159 KIIRPILCLSREEVENYVKLKNLNPRIDKTNFEKIYNRNKIRLDILPYMKENFNEDIVQT 218
Query: 290 LQAVISACRRTRSYVEHVCSNLINE 314
L + + ++ ++E + + L N+
Sbjct: 219 LNRMSTLLQKDNEFLEKLSAGLYNK 243
>gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
Length = 648
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e]
gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes str. 1/2a F6854]
gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818]
gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
gi|386045857|ref|YP_005964189.1| tilS/hprT [Listeria monocytogenes J0161]
gi|386049148|ref|YP_005967139.1| tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes FSL
R2-561]
gi|386052496|ref|YP_005970054.1| bifunctional tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes
Finland 1998]
gi|404282650|ref|YP_006683547.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2372]
gi|404412319|ref|YP_006697906.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC7179]
gi|405757206|ref|YP_006686482.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2479]
gi|61216688|sp|Q8YAC7.1|TILS_LISMO RecName: Full=Bifunctional protein TilS/HprT; Includes: RecName:
Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
Full=Hypoxanthine-guanine phosphoribosyltransferase;
Short=HGPRT; Short=HGPRTase
gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA
protein, C-terminal part similar to hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes EGD-e]
gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 1/2a str. F6854]
gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818]
gi|345532848|gb|AEO02289.1| tilS/hprT [Listeria monocytogenes J0161]
gi|346422994|gb|AEO24519.1| tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes FSL
R2-561]
gi|346645147|gb|AEO37772.1| bifunctional tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes
Finland 1998]
gi|404232152|emb|CBY53555.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2372]
gi|404235088|emb|CBY56490.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2479]
gi|404238018|emb|CBY59419.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC7179]
gi|441469768|emb|CCQ19523.1| Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes]
gi|441472904|emb|CCQ22658.1| Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes N53-1]
Length = 648
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 417
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 27/213 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLREESKEEANI 142
R+ + VSGG DS AL L + E D L A TVDHGLR ES EA
Sbjct: 23 RLGVAVSGGSDSTALLHLMS-----------RIAEGTDTNLFAATVDHGLRPESAAEAAK 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ ++ I EI++ DG G+LQ+ AR RYRL + I + + H AD
Sbjct: 72 VAALCWELEIPHEILKWTGWDG---TGNLQDQARRARYRLLRDWAHAQDIPAIALGHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA------YSCHDDLKNHSILLICQGGNR 256
DQAE ++RL R +GV GL+ M ++F A ++ L+++ L+ Q
Sbjct: 129 DQAETVLMRLGRAAGVTGLSAMPV-VRMFDGVALVRPLLFATRSQLRDY---LVAQA--I 182
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 289
DW+EDP+N++ F R + R SLG L+ +E
Sbjct: 183 DWMEDPSNQNIRFDRIKARQSLGQLAELGISAE 215
>gi|365154873|ref|ZP_09351271.1| tRNA(Ile)-lysidine synthetase [Bacillus smithii 7_3_47FAA]
gi|363628984|gb|EHL79677.1| tRNA(Ile)-lysidine synthetase [Bacillus smithii 7_3_47FAA]
Length = 471
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF--IDGLLAITVDHGLR-EESKEEA 140
+I +GVSGGPDS++L A +F ID L A+ +DH R +ES EE
Sbjct: 23 KIVVGVSGGPDSLSLLHYLA-----------RKRDFYGID-LFAVHLDHMFRGQESYEEL 70
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + I C R + + R LQE AR +RY++FQ+ Q L +AH
Sbjct: 71 LFVEEFCKEFHIPCLSKRINVSEIIRDNGTGLQETARMVRYQVFQQAMTQFAANKLALAH 130
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
H DDQ E ++RL+R + G AG+ + + + + IL C +
Sbjct: 131 HGDDQVETILMRLTRGTSGKGRAGIPYLRSFHNGWIIRPLLGITKEEILAYCDFYRLNPR 190
Query: 260 EDPTNRSPLFVRNRIRMSL 278
DP+N + RNR R+ +
Sbjct: 191 IDPSNSKGAYTRNRFRLEV 209
>gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG-6]
gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
Length = 487
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 128/286 (44%), Gaps = 43/286 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EE 135
P+ R+ + VSGGPDS+ L VL GG LL + +DHG R +
Sbjct: 19 FTPNRRVVVAVSGGPDSLCLLHVLVQLQAQGG------------PLLHVAHLDHGFRGPQ 66
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EA+ V+ + G+ I R D L R ++G + AAR RY + Q Q
Sbjct: 67 SAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKM-AAARQARYAFLTDLVQQQQAH 125
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-----AFSSQIFSSYAYSCHDDL------ 242
L +AH ADDQAE +L R +G GL GM A QI +S ++ DL
Sbjct: 126 ALAVAHTADDQAETVLLHALRGAGPAGLRGMRERVAAHEWQIEASVVHAA--DLVRPLLS 183
Query: 243 -KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTR 301
IL C +DP+NR+ + R+R+R + + + V++A RT
Sbjct: 184 TTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQIMPV----LARDNPQVVAALSRT- 238
Query: 302 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL 347
+C+ ++DQ + DL + P++IE I L+++ L
Sbjct: 239 ---AQICAEDYAYIQVMLDQIWP--DLVQVTPTQIE-IDLARWQTL 278
>gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1]
gi|423374883|ref|ZP_17352220.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AND1407]
gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1]
gi|401093365|gb|EJQ01466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AND1407]
Length = 476
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + + CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HH DDQ E ++RL R S G AG+A + Y + I+ C
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVDYCNKLKI 188
Query: 257 DWVEDPTNRSPLFVRNRIR 275
DP+N+ ++ RNR+R
Sbjct: 189 IPRIDPSNKKEVYTRNRLR 207
>gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
Length = 638
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 21/178 (11%)
Query: 64 TKYREAFSR-----RMAMAGLKPHHRI----ALGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+++ E F R R++ G + + I L VSGG DSMAL L +
Sbjct: 18 SQFLEHFQRAWCESRLSWGGRQTNRHIPSNLGLAVSGGADSMALAFLC---------KQL 68
Query: 115 EAGEFIDGLL--AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQ 172
+ +DGL A VDH REES EA V+ +SDMG++ +I+ +W G +
Sbjct: 69 QEQNLVDGLTVTAFVVDHKAREESSREARNVATWLSDMGLQAQILELEWPQGS-SVSAFE 127
Query: 173 EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
AR +R++ C +I LL+ HH DD E + RL + GLAG+ ++I
Sbjct: 128 THARRLRFQALGIACRDRRISALLMGHHQDDNVETTLWRLCTGARGAGLAGIPPIARI 185
>gi|380302183|ref|ZP_09851876.1| tRNA(Ile)-lysidine synthetase [Brachybacterium squillarum M-6-3]
Length = 360
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 24/220 (10%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTA--GWKTGGFNQNGEAGEFI 120
+T E + A L PH + +G+SGG DS+AL TA G + G +
Sbjct: 19 LTDRLEELADDTAAGQLSPH--LLVGLSGGADSLALLATTAWVGSRMGLTTR-------- 68
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
A VDHGL+E S E A + +G+ ++ P G ++ AAR+ R+
Sbjct: 69 ----AAIVDHGLQEGSAEVAERARSQAEWLGVEARVLTVAVDAAAP--GGVENAAREARH 122
Query: 181 RLFQKVCIQHQIGV-LLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSC 238
R + C+ + G+ LL+AH DDQAE ++ L+R +G LAG+ + + S
Sbjct: 123 RALE-TCLAEEGGLALLLAHTLDDQAEQVLMGLARGAGPRALAGIPRRRGPLLRPFLGSG 181
Query: 239 HDD---LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
D+ L+ IC+ +W EDP N P +R R+R
Sbjct: 182 RDEATALRREDTEEICRLHELEWWEDPMNTDPAHLRARVR 221
>gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
Length = 445
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + T EAG L A+TVDH LR ES +E
Sbjct: 28 KPVH-ILIAISGGSDSTGLLLAT-------HEARAEAGSDRVQLSAVTVDHALRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A+ VS +++GI + R W D +P G + EA+R RY L V +++ H
Sbjct: 80 AHKVSLLCAELGIPHTVRR--WDDPKPASG-ISEASRLARYSLIAGVASDIGADLVMTGH 136
Query: 200 HADDQAELFILRLSR--NSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGN 255
DQ E +R +R +S LGLAGMA + ++ + L + I +
Sbjct: 137 TLGDQRETVAMRAARSGSSENLGLAGMA-DAVLYGGRHWIMRPFLTCERQEIRDFVLSRS 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
R W +DP+N + + R R+R SL
Sbjct: 196 RGWFDDPSNDNARYERVRVRQSL 218
>gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica]
gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica CLIB122]
Length = 426
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 40/225 (17%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
M + L R+AL VSGG DSMAL + + +T G ++ A TVDHG+R
Sbjct: 1 MPLNTLTKLPRLALAVSGGSDSMALAYMIS--QTPGLSEKTTA---------YTVDHGVR 49
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
ES EA V VS +GI I++ D L+ + + R RY +
Sbjct: 50 SESSSEAQNVHEIVSRLGINHRILKLDALNDTK-----ELSMRQARYSKLIAAMNDDGVS 104
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD-DLKNHSILLICQ 252
++ AH DD E F++R+ R SG+ GLAG+ F+ Y + LK HS +
Sbjct: 105 TVVTAHTQDDCIETFVVRMLRGSGLFGLAGIQPRVS-FNPYTWGGGGIALKQHSRTELAS 163
Query: 253 G---------------------GNRDWVEDPTNRS-PLFVRNRIR 275
G N W EDPTN++ + RN +R
Sbjct: 164 GWKLMRPLLGLTKSHLRNVLVKNNIPWFEDPTNQNVEIAERNLVR 208
>gi|443926910|gb|ELU45459.1| PP-loop family domain-containing protein [Rhizoctonia solani AG-1
IA]
Length = 572
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+++ +SGGPDS+ L L + L +IT+DHGL+ S++ A
Sbjct: 30 LSVALSGGPDSICLLSLL------------KRASLDVPLRSITIDHGLQPTSRDSALRTR 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYR-LFQKVCIQHQIGVLLIAHHAD 202
R +G+ I+ +W G+P G ++EAARD RY+ L++ + + G ++ HHAD
Sbjct: 78 TRSEAIGVPGVILPAEWNRGKPSPGEAVEEAARDARYQALWRGLQLYDGPGTVMFGHHAD 137
Query: 203 DQAELFILRLSRNSGVLGLAGM 224
DQ E I+R+ R +G GL GM
Sbjct: 138 DQLETVIMRVLRGTGTYGLGGM 159
>gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 322
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL +L A G TVDHGLR ES EA +V+
Sbjct: 29 VGLAVSGGPDSLALLLLAH------------AVLPAQGFAVATVDHGLRAESAGEAAMVA 76
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H ++ GI + +R G +QE AR RYR + + + L+ AHHADDQ
Sbjct: 77 HLCAERGIAHDTLRISLAPGS----AIQERARAARYRALEDWRVGRGLTALVTAHHADDQ 132
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDP 262
AE ++RL+R +G+ GLA M + L L G+R V+DP
Sbjct: 133 AETLVMRLNRGAGLRGLAAMRARVPVPGGEGVLLRPLLGWARADLAALLGDRGIAAVDDP 192
Query: 263 TNRSPLFVRNRIRMSLG 279
+NR F R R+RM LG
Sbjct: 193 SNRDVRFERVRVRMGLG 209
>gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
Length = 482
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLVCAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + + + E+ R D + G QEAAR++RY + + + + +A
Sbjct: 76 AEEVRNIARKLELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE +L L R SG GLAGM + + + + ++ C N +
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLARREKNVQLIRPLLRMYKADLIEFCNFYNLSY 195
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V D TN S + RN IRM +
Sbjct: 196 VTDSTNLSSKYRRNAIRMDV 215
>gi|254574078|ref|XP_002494148.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Komagataella pastoris GS115]
Length = 483
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 81 PH---HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
PH R+ + +SGG DSMAL L + ++ +N E ++A+TV+H R+ S+
Sbjct: 18 PHGLPRRVGISLSGGVDSMALTSLLSRYR-DEYNVGVE-------IVALTVNHEYRKGSR 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+EA V V+ + ++ +I+ W LD + G+ + AR RY+ QK C + I
Sbjct: 70 QEAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQH 129
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGM 224
L + H +DQ E F+LRL +NS + G+ M
Sbjct: 130 LFLGHQLEDQVETFLLRLKQNSTIFGMRCM 159
>gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 469
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L + GE + G VDHG+RE S +A+ V
Sbjct: 32 KMVVAVSGGGDSVALALLL---------KRFWPGEQVWG----HVDHGIRETSGRDADFV 78
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S GIRC + R R K ++ AAR +R+ + + + G + AH DD
Sbjct: 79 SALAESWGIRCHVGRFHVPTDRIKGESMEMAARRVRHAFLEDLASRLGAGFIATAHTVDD 138
Query: 204 QAELFILRLSRNSGVLGLAGM-----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
QAE +L L R +G+ GLAG+ + + + + L+ S+ W
Sbjct: 139 QAETVMLNLLRGTGLWGLAGIPQRRGPWVRPVIAMRRWELRRYLEESSV---------SW 189
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
VED TN + RN++R+ L
Sbjct: 190 VEDETNLCCDYRRNQVRLEL 209
>gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417954512|ref|ZP_12597546.1| tRNA(Ile)-lysidine synthase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342815232|gb|EGU50156.1| tRNA(Ile)-lysidine synthase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 435
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 19/201 (9%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P+ RI LG+SGG DS + L A + A ++ LA+ V HGL + + +
Sbjct: 16 QPNTRIVLGLSGGLDSRVMLELLAQY----------AQQYRVDCLAVHVHHGLSDNADQW 65
Query: 140 ANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A H + ++ E V D ++GR ++E+AR+ RY +K + LL
Sbjct: 66 AEQCQHWCQSLNVQLVVEKVSLD-IEGRS----IEESAREARYNALRKYLSSGDL--LLT 118
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HADDQ E F+L L R SG GL+ MA S+ + I Q + +
Sbjct: 119 GQHADDQLETFLLALKRGSGPKGLSSMAAVMPFASAQIVRPLLSVTRQEIEEFAQSLDLE 178
Query: 258 WVEDPTNRSPLFVRNRIRMSL 278
WVED +N+ F RN IR +L
Sbjct: 179 WVEDESNQDQRFERNFIRHNL 199
>gi|402814509|ref|ZP_10864103.1| tRNA(Ile)-lysidine synthase TilS [Paenibacillus alvei DSM 29]
gi|402508356|gb|EJW18877.1| tRNA(Ile)-lysidine synthase TilS [Paenibacillus alvei DSM 29]
Length = 531
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Query: 85 IALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
I + VSGGPDSM L LTA ++ + L+ V HG R + EE
Sbjct: 39 IVVAVSGGPDSMLLLHALTA------LDERSDCKP--GKLIVAHVHHGFRGQESEEEAEF 90
Query: 144 SHRVS-DMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + +G+ E++R D ++G + Q AAR +RY ++ ++ + +AHHA
Sbjct: 91 VEQETVKLGLPFEMIRVDAPGLSKREGLNPQAAARQLRYEFLIQIAHRYAATHIALAHHA 150
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE ++R+ R +G+ GLAGMA+S + + DL+ +L C +V D
Sbjct: 151 DDQAETVLMRMIRGTGITGLAGMAWSREEDGLHYIRPLLDLRKAEVLQRCDERGISYVTD 210
Query: 262 PTNRSPLFVRNRIRMSL 278
+N + RNR+R+ +
Sbjct: 211 SSNAKRSYFRNRMRLDI 227
>gi|384134042|ref|YP_005516756.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339288127|gb|AEJ42237.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 513
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
LGVSGG DSM L L EA + G + V HGLRE + +A V
Sbjct: 65 LGVSGGVDSMVLLHLCQ-------RAAEEAPRALGGFSVVHVHHGLREAADADAAFVERY 117
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
D GI CEIVR D R +G A R L ++ + + GV+L+AHHA D+ E
Sbjct: 118 CRDRGIACEIVRVTVEDAR-GEGVEAAARRARYEALAERA--RAKGGVILVAHHAQDELE 174
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
F++RL R +G GL M +++ ++ I VED TN
Sbjct: 175 TFVMRLLRGAGPGGLGAMRTEAEMNGVRVLRPLLAVEKREIERYAALHGVPHVEDETNED 234
Query: 267 PLFVRNRIR 275
P F RNR+R
Sbjct: 235 PRFFRNRVR 243
>gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
12680]
gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
12680]
Length = 463
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 115/260 (44%), Gaps = 22/260 (8%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
+ P + +GVSGGPDS+AL L K GF+ + A ++HGLR E++
Sbjct: 21 ISPGELVVVGVSGGPDSVALLHLLHLLGKEEGFS-----------IHAAHLNHGLRPEAE 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EE V +G+ C + R + R + ++EA R RY F +V + + +
Sbjct: 70 EEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFIRVAEELKADKVA 129
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DQAE ++ L R SG+ GL GM+ I + + I+ +
Sbjct: 130 TAHHMGDQAETVLMHLLRGSGLKGLGGMSPRRGILIRPFLT----VTRTDIMSYLEENRL 185
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA----VISACRRTRSYVEHVCSNLI 312
D+ D +N ++RNRIR L L + + A + + R +E +
Sbjct: 186 DYCLDASNYDWDYLRNRIRHQLIPLLEKEYNPNIVASLCQLATVARDEDMVLEEMAVKAF 245
Query: 313 NEAVTVMDQGYAVIDLEILN 332
E + DQG V++LE +
Sbjct: 246 KE-IARPDQGGLVLNLETMQ 264
>gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704]
Length = 775
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+AL VSGGPDSMAL L G+ + + ++A+ VDH R+ S +EA V
Sbjct: 33 RVALAVSGGPDSMALAHLCRKLTVEGYIPDLK-------VIALIVDHKSRKGSADEALRV 85
Query: 144 SHRVSDMGIRCEIVRCDW---LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + +MG+ EI+ W K + + AR +RY+ C I LL+ HH
Sbjct: 86 AGWIQEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHH 145
Query: 201 ADDQAELFILRLSRNSGVLGLAGM 224
DD E +LRLS+ GLAG
Sbjct: 146 RDDNIETGLLRLSQGHRRFGLAGF 169
>gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
Length = 347
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +G SGGPDSMAL L+A FN LLA+ VDHGLR EES+EE
Sbjct: 24 VVVGTSGGPDSMALLYALKTLSAAMH---FN-----------LLAVYVDHGLRPEESREE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+++ + + I R D +QG L+ AAR++RYR F +V + + +A
Sbjct: 70 EQLMAAVAAALEIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQ---IFSSYAYSCHDDLKNHSILLICQGGN 255
H ADDQAE +LRL R + GL+GMA ++ I A S + +L N
Sbjct: 130 HTADDQAEELLLRLLRGTARGGLSGMAPLARGRIIRPLLAVSKAE------VLAYLAQRN 183
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
+ D +N+ FVRNR+R+ L
Sbjct: 184 IAFARDSSNQDLRFVRNRVRLEL 206
>gi|374855448|dbj|BAL58305.1| tRNA(Ile)-lysidine synthetase, partial [uncultured Chloroflexi
bacterium]
Length = 473
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 110/262 (41%), Gaps = 30/262 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
L P + +GVSGGPDS+ L +++ ++ L+ +H LR E+
Sbjct: 11 LLPDRPVLVGVSGGPDSLCLAHFLISQDYR----------------LIVAHFNHRLRPEA 54
Query: 137 KEEANIVSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+A V+ + G+ D W R ++ L+ AAR++RYR I+H
Sbjct: 55 GEDALFVARMAQEWGMSYVQGEADVRAW--ARQRRLSLEAAARELRYRFLFSAAIEHGAQ 112
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI--FSSYAYSCHDDLKN--HSILL 249
+ + H ADDQ E +L R SG+ GL GM + + + FSS L I
Sbjct: 113 AVAVGHTADDQVETVLLHFLRGSGLKGLCGMEYRTHLRRFSSEIPLVRPFLNTWRREIEA 172
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEH 306
C +D TN S F+RNRIR+ L + + + L + R +
Sbjct: 173 YCTQAGLTPCQDATNFSTRFLRNRIRLELLPILETYNPRLREHLLQMSELFREDYQLIAE 232
Query: 307 VCSNLINEAVTVMDQGYAVIDL 328
+A+ +GY +D+
Sbjct: 233 SVEMFWRKALIESKEGYVALDV 254
>gi|430751794|ref|YP_007214702.1| tRNA(Ile)-lysidine synthetase [Thermobacillus composti KWC4]
gi|430735759|gb|AGA59704.1| tRNA(Ile)-lysidine synthetase [Thermobacillus composti KWC4]
Length = 480
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKE 138
+P I VSGGPDS AL L +GE G L A V+HG R EES
Sbjct: 18 QPGDTILAAVSGGPDSTALLHLLR-------RLSGECGFR---LAAAHVNHGFRGEESAR 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA V ++G+ + V D + G + Q AAR+ RY + + + +
Sbjct: 68 EAEFVRRLCEELGVPLDAVEYDLPSYIEETGMNAQAAAREKRYAFLRLAAARRGASRIAL 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
AHHADDQAE ++RL R +G G+AGM + + + +L C
Sbjct: 128 AHHADDQAETVLMRLLRGAGTSGIAGMPMKRREGNVELIRPLLRISKLELLQYCAREGLV 187
Query: 258 WVEDPTNRSPLFVRNRIRMSL 278
+ ED +NR ++ RN +R+ +
Sbjct: 188 YCEDSSNRKTVYFRNAVRLEI 208
>gi|357391278|ref|YP_004906119.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
Length = 375
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 23/194 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL TA F EA + + A+TVDHGL++ S E A V+
Sbjct: 77 VLVAVSGGADSMALATATA------F----EAPKLGLRVGAVTVDHGLQDGSAERAEQVA 126
Query: 145 HRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
R+ ++G + VR ++G + AARD RY +H +L+ H
Sbjct: 127 VRLRELGLDPVEAVAVRVG------REGGPENAARDARYAALDLAAERHGALAVLLGHTR 180
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE +L L+R SG LAGM + +L + C + +D
Sbjct: 181 DDQAETVLLGLARGSGARSLAGMPAQKGRYRRPLL----ELDRAATRQACSAQSIPVWDD 236
Query: 262 PTNRSPLFVRNRIR 275
P N P + R+R+R
Sbjct: 237 PHNTDPAYTRSRVR 250
>gi|365087921|ref|ZP_09327679.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. NO-1]
gi|363417357|gb|EHL24438.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. NO-1]
Length = 323
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A G AI V HGL+
Sbjct: 10 AMQAFAPALPLAVGLSGGADSTALLLACARRWPGQVQ-------------AIHVHHGLQA 56
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIG 193
+ + D+G+ + R +D R G E AAR RY+ F+ V + +
Sbjct: 57 AADGFEQHCARLCQDLGVPLWVER---VDARHAPGQSPEDAARQARYKAFEAVALASKAR 113
Query: 194 VLL----IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
V + +A HADDQ E +L LSR +GV GLA M + + + + +
Sbjct: 114 VAIQSIALAQHADDQVETLLLALSRGAGVAGLAAMPARWERAGVVWHRPLLRVASADVRS 173
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
+ ++ WVEDPTN + RNRIR L +F +
Sbjct: 174 WLRLQDQSWVEDPTNADQRYTRNRIRAQLLPALEATFPA 212
>gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
grylli]
gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
grylli]
Length = 458
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-RDMR 179
+ L AI ++HGL S + A I H + I CEIV LD RPK G EA+ R+ R
Sbjct: 44 ERLRAIHINHGLHIHSDKWAKICRHACEKLTIDCEIVT---LDIRPKTGESLEASLREAR 100
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS-YAYSC 238
Y +K LL AHH +DQAE F+L+L R +G+ GL M F + ++ Y
Sbjct: 101 YHAIEKKIPAG--NFLLTAHHRNDQAETFLLQLFRGAGLKGLISMPFCRPLTNNVYLMRP 158
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + Q + W+ED +N++ F RN IR
Sbjct: 159 LLNFTRQELYAYAQTHHLTWIEDDSNKNQRFSRNFIR 195
>gi|386042556|ref|YP_005961361.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes 10403S]
gi|404409452|ref|YP_006695040.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC5850]
gi|345535790|gb|AEO05230.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes 10403S]
gi|404229278|emb|CBY50682.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC5850]
Length = 648
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + + + + ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVPK--------EAISVAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|349701040|ref|ZP_08902669.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter europaeus LMG 18494]
Length = 420
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 70 FSRRMAMAGLKPHH--RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
F+ MA G P +A+ VSGG DSMAL +L W+ ++A+
Sbjct: 12 FATMMASLGPWPGQGVPVAVAVSGGADSMALAILARQWR--------------HDVMALV 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR ES+ EA R+S +GI ++ L G + + E AR MRY+ C
Sbjct: 58 VDHGLRAESRSEAVQTLARLSTLGIPGRLLA---LTGLARGPRMAERARRMRYQALFAAC 114
Query: 188 IQHQIGVL--LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+IG L L+AHHA DQAE ++R SG GLA MA ++ + +
Sbjct: 115 --REIGALDLLVAHHAGDQAETVMMRRRAASGDDGLAAMAVATPVADVRIVRPLLGVAKS 172
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
++ + WVEDP+N R R R +L
Sbjct: 173 ALYATVRAAGVAWVEDPSNHDLRTERARARQAL 205
>gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS]
Length = 812
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGGPDSMAL L G + FI VDH RE+S +EA V+ +
Sbjct: 44 VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVAGWIK 96
Query: 149 DMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
MG++ +++ W +G L + AR +RY+ C+ I L + HH DD
Sbjct: 97 SMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNV 156
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
E +LRL++ G GLAG S I C HS+ + Q G+
Sbjct: 157 ETALLRLAQGHGRFGLAGFDSVSPI-----PEC------HSLWGVSQSGD 195
>gi|418940869|ref|ZP_13494216.1| tRNA(Ile)-lysidine synthase [Rhizobium sp. PDO1-076]
gi|375052409|gb|EHS48828.1| tRNA(Ile)-lysidine synthase [Rhizobium sp. PDO1-076]
Length = 427
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 133/313 (42%), Gaps = 32/313 (10%)
Query: 80 KPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
KP H + + VSGG DS L + L T GF L A T+DH LR+ S
Sbjct: 20 KPSH-LLIAVSGGSDSTGLLIALRRAIATHGFPHT---------LTAATIDHALRQASAT 69
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA V + + I I R W +PK G + AAR+ RY L ++ Q ++
Sbjct: 70 EAAWVFELCARLDIVRHIRR--WTGDKPKTG-IPAAAREARYGLLAEIAQQCGADAIVTG 126
Query: 199 HHADDQAELFILRLSR-NSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGN 255
H DDQ E +R SR N LGLAGMA + +F + D+ +I +
Sbjct: 127 HTHDDQIETVAMRASRANHENLGLAGMA-PATLFDRRIWLLRPFLDVTREAIRDSLRQVG 185
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
+ W++DP+N + R R+R D + F E + R R + ++ + +
Sbjct: 186 QSWIDDPSNADRSYERVRMRQ---DNVAIDFNPE-----AGLR--RQALSQATADWLGQH 235
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375
T++ +D + L + +I L + RP +T KL+ + +
Sbjct: 236 ATLISGCVIKLDRDAL--AAPPEILRHGMATLAAVLGGKPHRPAAQATDKLM--ALASAE 291
Query: 376 CKTSLTAAGCYLC 388
TSLT +GC +
Sbjct: 292 GSTSLTLSGCLVV 304
>gi|306490874|gb|ADM94993.1| predicted PP-loop superfamily ATPase [uncultured candidate division
JS1 bacterium]
Length = 460
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGGPDS+ L + N ++ L+ V HG+R +ES EA
Sbjct: 7 KVIVAVSGGPDSICLLDIL----------NHVKHKYNLSLIIAHVHHGIRIKESDIEARF 56
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + + E V D R K +++A R +RY+ F + ++Q + + H+A
Sbjct: 57 VRLKSAHLKLPFEQVTISVPDIARNKGLSIEQAGRTIRYQFFNNLLNKYQAQKIALGHNA 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R SG+ GL G+ F C+ I+ CQ N + D
Sbjct: 117 DDQVETILMRIIRGSGLRGLRGIPPKRGAFIRPLIECN----RSEIVAYCQRNNIAYCID 172
Query: 262 PTNRSPLFVRNRIRMSL 278
+N+ P ++RN+IR L
Sbjct: 173 SSNKEPKYLRNKIRHQL 189
>gi|336383993|gb|EGO25141.1| hypothetical protein SERLADRAFT_436903 [Serpula lacrymans var.
lacrymans S7.9]
Length = 580
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 26/281 (9%)
Query: 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
++ + F++ +G P +IA+G SGGPDS L L + ++ + ++
Sbjct: 16 EFWQMFTKCSPPSGWNPKLQIAVGNSGGPDSTCLLFLINR-LLNERKSSRDSAKLPPSVV 74
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQ-GHLQEAARDMRYR 181
++TVDHGL+E S A ++ + +G++ + W PK +E ARD R+
Sbjct: 75 SLTVDHGLQEASATMAAHSANTAASLGVKHHSLPIPWSTSPFPPKPLAAFEETARDARFH 134
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-----------AFSSQI 230
+ + + VL HHADDQ E ++RL+R + +G AGM A ++
Sbjct: 135 VLFQAMTRTGANVLAFGHHADDQVETSLMRLARGTTEVGAAGMRRCRRWGMGIGAEEGEL 194
Query: 231 -------FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLS 282
+ + +++ IL C ++V D TN P + +RN IR L +
Sbjct: 195 GWAGLEGMNRWIVRPLLEVRKDRILATCHEHGLEYVTDQTNFQPEITLRNAIRRMLAEEE 254
Query: 283 SCSFKSEL---QAVISACRRTRSYVEHVCSNLINEAVTVMD 320
+ ++L QA + ++ V S N T++D
Sbjct: 255 ATGKDTKLELDQAPQEMPPEFKEALQKVKSASANFQTTILD 295
>gi|392374624|ref|YP_003206457.1| ATPase; tRNA(Ile)-lysidine synthase [Candidatus Methylomirabilis
oxyfera]
gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein)
[Candidatus Methylomirabilis oxyfera]
Length = 468
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 22/209 (10%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
RM AG + L VSGG DSMA+ L +T + L ++H L
Sbjct: 17 RMLAAG----EAVVLAVSGGVDSMAMLHLLLHLRT----------RYHGPLHVAHLNHDL 62
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQH 190
R ES E A V + I I R D R ++ G LQ AARD+RYR ++V +
Sbjct: 63 RGAESAETARFVQRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQ 122
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILL 249
G + + HH DDQAE ++ L R SGV G+ G+ +I ++++ +
Sbjct: 123 GAGRIAVGHHRDDQAETVLMNLLRGSGVRGIGGIPPVRGRIIRPLIDCSREEIERY---- 178
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ +VED +N + RNRIR+ L
Sbjct: 179 -VRKERIPYVEDSSNHVLAYSRNRIRLEL 206
>gi|381199806|ref|ZP_09906952.1| tRNA(Ile)-lysidine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 315
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 33/201 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES +EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRVAAATLDHGLRAESADEAAMV 74
Query: 144 SH-----RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ RV + E G++Q+ AR RY + + +L A
Sbjct: 75 ARWCAERRVPHATLAPETA---------VSGNIQDWARRQRYAQLEAWRAGAGLDWILTA 125
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HHADDQ E ++RL+R SGV GLAG+ A + ++ L+ H+ Q G
Sbjct: 126 HHADDQLETLLMRLNRGSGVGGLAGVRARAGRVLRPLLTVRKAQLQAHA----DQAG-LP 180
Query: 258 WVEDPTNRSPLFVRNRIRMSL 278
+V DP+N P F R +R L
Sbjct: 181 YVLDPSNADPRFDRAALRKRL 201
>gi|418298601|ref|ZP_12910439.1| hypothetical protein ATCR1_13783 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355536514|gb|EHH05787.1| hypothetical protein ATCR1_13783 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 450
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
P H I + +SGG DS L +L T G ++ L A+TVDH LR ES +E
Sbjct: 33 NPAH-ILVAISGGSDSTGL-LLALHEATAGVGKDRLR------LSAVTVDHALRAESADE 84
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G L EA+R RYRL +V ++ +++ H
Sbjct: 85 ACKVAMLCAELGIPHVTRR--WDGAKPASG-LSEASRLARYRLIAEVALETGADLVVTGH 141
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGN 255
DQ E +R +RN G LGL+GMA + ++ S + L + +I
Sbjct: 142 TIGDQRETVAMRAARNGGSNNLGLSGMA-DAVLYDSRYWVMRPFLMCERQAIRDYVSSRE 200
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
R W++DP+N + + R R+R +L
Sbjct: 201 RGWLDDPSNENIRYERVRVRQAL 223
>gi|349687683|ref|ZP_08898825.1| Ile-tRNA lysidine synthase [Gluconacetobacter oboediens 174Bp2]
Length = 424
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DSMAL +L W+ ++A+ VDHGLR ES+ EA
Sbjct: 29 VAVAVSGGADSMALAILARQWRRD--------------VVALVVDHGLRAESRTEAEQTL 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL--LIAHHAD 202
R+S + I ++ L G + + E AR MRY+ C QIGVL L+AHHA
Sbjct: 75 ARLSTLDIPGRLLV---LTGLERGSRMAERARRMRYQALSAAC--RQIGVLDLLVAHHAG 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE ++R +SG GLA MA + ++ + WVEDP
Sbjct: 130 DQAETVMMRARADSGDDGLAAMAIVTPTVDIRIVRPLLAFPKAALYATVRATGVAWVEDP 189
Query: 263 TNRSPLFVRNRIRMSL 278
+N R R R +L
Sbjct: 190 SNHDLRTERARARQAL 205
>gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
gi|167710570|gb|EDS21149.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. SS2/1]
Length = 480
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I +GVSGG DS+ L ++ N+ E+ + A+ ++H +R E+ ++ V
Sbjct: 32 IIIGVSGGADSVYLLLI--------LNELRESMNLT--ITAVHINHMIRREAVDDQKFVQ 81
Query: 145 HRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I C+I D + ++ L+EA R RY F K ++ + IAHH +D
Sbjct: 82 DLCGQLSILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQND 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE F+ R+ R +G+ G M C +K I+ + + WVED +
Sbjct: 142 QAETFLYRVVRGTGIYGAGAMREKDGNLIR-PLLC---VKKEEIVKYLKEAGQAWVEDAS 197
Query: 264 NRSPLFVRNRIR 275
N+ F RN+IR
Sbjct: 198 NQDDAFARNQIR 209
>gi|398385288|ref|ZP_10543312.1| tRNA(Ile)-lysidine synthetase [Sphingobium sp. AP49]
gi|397720963|gb|EJK81515.1| tRNA(Ile)-lysidine synthetase [Sphingobium sp. AP49]
Length = 315
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRIAAATLDHGLRAESAAEAAMV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ I + + P G++Q+ AR RY + + +L AHHADD
Sbjct: 75 ARWCAERRIPHATLAPE----APVSGNVQDWARRQRYAQLEAWRAGAGLDWILTAHHADD 130
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
Q E ++RL+R SGV GLAG+ + ++ L+ H+ Q G +V DP
Sbjct: 131 QLETLLMRLNRGSGVGGLAGVRGRTGRVLRPLLAVRKVALQAHA----DQAG-LPYVLDP 185
Query: 263 TNRSPLFVRNRIRMSL 278
+N P F R +R L
Sbjct: 186 SNADPKFDRAALRRRL 201
>gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
Length = 665
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 132/307 (42%), Gaps = 36/307 (11%)
Query: 50 KCSHAHA---VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWK 106
K S A A + + + M +++ F M + + +GVSGG DSM L L W
Sbjct: 137 KISEAKARPDIFFDSKMIEFK--FQEFMNTLTISNKSTLVIGVSGGSDSMVLLYLLKNWC 194
Query: 107 TGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM----------GIRCEI 156
G +N + IT+DH + E+ +S ++ + I+ ++
Sbjct: 195 IG---ENSANVNRKLKITVITIDHKMTNPVAEDIPYISKIINQLINNDNNSNFIKIKHKV 251
Query: 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216
V D + R KQ Q + R+ R + + + ++ + +DQ E FI R+++NS
Sbjct: 252 VEID--EQRCKQ---QVSLRNQRIEILMSESVGNGNNLIFYGTNLNDQMETFIQRINKNS 306
Query: 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHS---ILLICQGGNRDWVEDPTNRSPL-FVRN 272
G+ GLA M ++I ++++ L + S IL C + + DPTN P+ + RN
Sbjct: 307 GLDGLAAMTKITKISNTHSVLLVRPLLDFSKLEILDFCSERSIQYFNDPTNDDPVSYSRN 366
Query: 273 RIRMSLGDLSSCSFKSELQAVI---------SACRRTRSYVEHVCSNLINEAVTVMDQGY 323
+ R L D S +S L I + R + + V ++N+ + + +
Sbjct: 367 KTRHQLRDFKEFSIESPLSTTINLKQFLSGLTPIRMIKDQTDKVLQKMLNDILELNEHKN 426
Query: 324 AVIDLEI 330
+ DL +
Sbjct: 427 NIRDLRL 433
>gi|365922011|ref|ZP_09446252.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium valvarum F0432]
gi|364575018|gb|EHM52440.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium valvarum F0432]
Length = 436
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 98/242 (40%), Gaps = 33/242 (13%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L +SGG DSMAL + L+A VDHG S E
Sbjct: 28 LALSGGRDSMALLQALVALRQ----------RLTAPLVACYVDHGWSAASGEWGAFCVRE 77
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ GIRCE++R +W + L+ AR +RY+ GVLL AHH +DQ E
Sbjct: 78 AAARGIRCEVLRLNWHTASGES--LEARARLLRYQALAARLPPR--GVLLTAHHREDQVE 133
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
F L+L R SG+ GLA M + D +I +++DP+N
Sbjct: 134 TFFLQLLRGSGLDGLAAMPAQRPFADGAHWRPLLDTSRAAIEAFVAAEGVPFLDDPSNVD 193
Query: 267 PLFVRNRIR---------MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
F RNR+R M+ S + +E QAV A + ++ EA T
Sbjct: 194 TRFARNRLRHAGLPPLVEMAAAVARSAGWLAEAQAVQQA----------LLDGILGEAQT 243
Query: 318 VM 319
V+
Sbjct: 244 VL 245
>gi|451822881|ref|YP_007459155.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775681|gb|AGF46722.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 335
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS L +++ A + ++ V+HGL+E+S AN V
Sbjct: 26 IAVAVSGGIDSSTLAIVS----------KHVADKLNIDMVIFHVNHGLQEKSDYWANNV- 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H ++ + + EI + ++ +AR RYR F+++ I +L+AHH +DQ
Sbjct: 75 HLLAKI-LNVEIYEKKVFVNLNQSKGMEGSARIARYRAFKELSESMGIKYILLAHHLNDQ 133
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN----RDW-- 258
AE +LRL R SGV G+ GM S++ S + LK L+ + + W
Sbjct: 134 AETVLLRLLRGSGVKGMVGMRPLSRVDS--VFYIRPWLKVDKKLIELENKKFSLEKSWFP 191
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V+DPTN+ PLF R +R+ L
Sbjct: 192 VDDPTNKDPLFSRGVVRLFL 211
>gi|408378753|ref|ZP_11176349.1| hypothetical protein QWE_14192 [Agrobacterium albertimagni AOL15]
gi|407747203|gb|EKF58723.1| hypothetical protein QWE_14192 [Agrobacterium albertimagni AOL15]
Length = 441
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A T+DHGLR E+ +EA V+ ++G+ I R W +P G L AAR+ RYRL
Sbjct: 65 LSAATIDHGLRPEAADEAEQVAILCRELGVPHRIER--WTGEKPTTG-LSAAAREARYRL 121
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS-GVLGLAGMAFSSQIFSSYAYSCHDD 241
+ ++ H DDQ E +R R++ VLGL+GMA ++ +++ +
Sbjct: 122 LAHAADTYDADAIVTGHTLDDQIETVAMRAGRSADAVLGLSGMAPAT-LYAGRLWILRPF 180
Query: 242 L--KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
L + +I + R W++DP+N P + R R R + + + + + + IS
Sbjct: 181 LHTRRAAIRSSLEASGRAWIDDPSNDDPHYERVRTRRTAPRVDAATIDAAARQRIS 236
>gi|406920102|gb|EKD58225.1| hypothetical protein ACD_56C00169G0004 [uncultured bacterium]
Length = 320
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEAN 141
+I +GVSGGPDS+ C+L N + + D L I V++GLR +ES ++ +
Sbjct: 22 KIIIGVSGGPDSV--CLL---------NIMTDLSQKYDFQLHIAHVNYGLRGKESDKDED 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V G + ++R D + G+L+ RD+RY F+K+ ++ ++ IAH+
Sbjct: 71 LVRKMAEKYGQQITVLRLKKSDYK---GNLENTLRDIRYEFFEKLRVEMAFDLIAIAHNQ 127
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DDQAE ++R+ R SG+ GL+ + A S ++ + ++ IL + ++
Sbjct: 128 DDQAETVLMRVLRGSGLEGLSAIKARSDKLIRPLLKTSKEE-----ILAFNKENKLEFRL 182
Query: 261 DPTNRSPLFVRNRIRMSL 278
D +N++ F RNR+R L
Sbjct: 183 DESNKNFDFTRNRLRHEL 200
>gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 448
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 33/276 (11%)
Query: 81 PHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
P H I + VSGG DS+ L + L + F + AI+VDHG+R+E+K+E
Sbjct: 19 PAH-ILVAVSGGSDSIGLLIALHSILSDNSFRAIK--------ISAISVDHGIRDEAKDE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V S +GI +V W D +PK G L AAR RY L ++ +++ AH
Sbjct: 70 VKYVFDICSRLGIPHAVVV--WKDQKPKTG-LMAAARKARYALIVDYAMKIGATLVVTAH 126
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMA----FSSQIFSSYAYSC--HDDLKNHSILLIC 251
DDQ E +R R+ +GL+G+ + +++ + + C +D++ S LL
Sbjct: 127 TFDDQLETVYMRSQRDYAEKGMGLSGIPETVLYDMRLWIARPFLCCRREDIR--SFLL-- 182
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
N W EDP+N F R R+R + D+ ++ I R R V + + L
Sbjct: 183 -QRNIGWCEDPSNADDRFERVRVRRLIQDIDP----HKMYRKIEKFRNLRIAVNNNVATL 237
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL 347
I + + V Q + +LN I+ I LS L +
Sbjct: 238 IPQYLKVHCQSVIALSENVLN---IDLILLSYLLKV 270
>gi|418406037|ref|ZP_12979357.1| tRNA-lysidine synthase [Agrobacterium tumefaciens 5A]
gi|358007950|gb|EHK00273.1| tRNA-lysidine synthase [Agrobacterium tumefaciens 5A]
Length = 445
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 27/298 (9%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + EA L A+TVDH LR ES +E
Sbjct: 28 KPVH-ILIAISGGSDSTGLLLAM-------HEARAEADPDRVRLSAVTVDHALRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A+ VS +++GI + R W D +P G + EA+R RY L V +++ H
Sbjct: 80 AHKVSLLCAELGIPHTVRR--WDDPKPASG-ISEASRLARYSLIADVASDIGADLIVTGH 136
Query: 200 HADDQAELFILRLSR--NSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGN 255
DQ E +R +R +S LGLAGMA + ++ + L + I +
Sbjct: 137 TLGDQRETVAMRAARSGSSENLGLAGMA-DAVLYGGRHWIMRPFLTCERQEIRDFVLSRS 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
R W +DP+N + + R R+R SL D S F ++ A + ++Y E + + +
Sbjct: 196 RGWSDDPSNDNARYERVRVRQSLSD-SPPPFDAQ------AAVKRQAYSEK-TAFFLQQN 247
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT 373
V V A + +E L P E LA+++ + R S+ +L +++T
Sbjct: 248 VEVFHATLARLSIEGLMPDLPE---FRHGLAVLIANLGGRAYFPAASSMDRVLQFLKT 302
>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
Length = 524
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
++A L+ + VSGG DS+AL L K GF + DH LR
Sbjct: 18 SLAELEVRGSVVAAVSGGGDSVALLYLL---KALGFEA-----------IVAHFDHALRP 63
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EEA V H +G CE+ R + + K+ +L+ AR++RY +V +++
Sbjct: 64 SSAEEAVWVQHLAEALGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFLSRVAKKYRTE 123
Query: 194 VLLIAHHADDQAELFILRLSRNSG-VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+L AH DDQAE +L+L R +G G+ ++ +L+ + L +
Sbjct: 124 AILTAHTQDDQAETVLLQLVRGTGRATGI--RKRQGRVVRPLLGFTRAELRGY---LRAK 178
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
G + W+EDPTN+ P RN +R
Sbjct: 179 GAS--WLEDPTNQDPALDRNYLR 199
>gi|387814779|ref|YP_005430266.1| tRNA(Ile)-lysidine synthetase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381339796|emb|CCG95843.1| tRNA(Ile)-lysidine synthetase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 445
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A+ ++H L+ + + +G+ ++ R + G G L+E+AR RY +F+
Sbjct: 56 ALHINHQLQSNHDQTERACIDLCAGLGVELQVRRVNVATG---AGSLEESARAARYEVFR 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+V + + LL+AHHADDQAE + RL R +GV GLAGM S + + Y +
Sbjct: 113 EVLGDNDL--LLMAHHADDQAETVLFRLLRGTGVNGLAGMPVSRSLGRGHLYRPWLGVSR 170
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ I + W EDP+N+S + RN +R S+
Sbjct: 171 SRLEQIAREQELSWAEDPSNQSEVHDRNYLRHSV 204
>gi|383786089|ref|YP_005470658.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium pennivorans DSM
9078]
gi|383108936|gb|AFG34539.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium pennivorans DSM
9078]
Length = 451
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGG DS+ + L K QN G T +H LR E+ EE V
Sbjct: 37 LAVSGGIDSITMLDLFYRLKKE--RQNLRIG-------VATFNHKLRPEADEEVEFVRAE 87
Query: 147 VSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
MG D R + ++EAAR++RYR ++V +H + AH+A+D
Sbjct: 88 SERMGFTFYTDSADVRSYSRQNKMSIEEAARNLRYRFLEQVMKEHHYELTATAHNANDLL 147
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E I+R ++ +G GLAG+ +I S+ + I L + N D+V D +N
Sbjct: 148 ETMIMRFTKGTGPFGLAGL----KIISNNYFRPMLFFTRQEIELYAKNRNLDYVVDMSNY 203
Query: 266 SPLFVRNRIRMSL 278
+ RN IR S+
Sbjct: 204 DEHYQRNYIRHSI 216
>gi|78357070|ref|YP_388519.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio alaskensis G20]
gi|78219475|gb|ABB38824.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio alaskensis G20]
Length = 357
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 99/227 (43%), Gaps = 18/227 (7%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGG DS AL ++ + A ++A+ +DH LR+ES ++A+ VS S
Sbjct: 63 SGGADSTALLLIL----------HYLAPRMGHTVVAVHLDHALRQESADDAHFVSQLCSA 112
Query: 150 MGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
GIR VR D D + L+EA R RY + K V+ HHADD E
Sbjct: 113 AGIRLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDV 172
Query: 209 ILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSP 267
++RL R +G L GM A + + K + L C+ W ED +N P
Sbjct: 173 LMRLIRGAGWPALGGMQAVIPERSLLRPLLVTEKYKLTTFLEACRC---PWREDASNSDP 229
Query: 268 LFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNL 311
F RNRIR ++ L + SF + + + A R Y V L
Sbjct: 230 SFTRNRIRNTIIPLLQQENPSFGTTITELWEAAAADRDYWTDVLPEL 276
>gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1]
Length = 742
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A RI L VSGG DSMAL L + + F + A + G +A+ VDH L
Sbjct: 95 RFPTARFARPQRIILAVSGGVDSMALAFLVSKF-IRMFRGSKVADNPVHGAMAVVVDHKL 153
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
R+ S EA V + + I+ + W D R P++ +++ AR RYR ++
Sbjct: 154 RDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLARTYRYRALGRI 213
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
C L AHH DDQ E ++RL G GL G+ ++ I Y
Sbjct: 214 CEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGLRGIREANSIPECY 261
>gi|408355443|ref|YP_006843974.1| tRNA(Ile)-lysidine synthase [Amphibacillus xylanus NBRC 15112]
gi|407726214|dbj|BAM46212.1| tRNA(Ile)-lysidine synthase [Amphibacillus xylanus NBRC 15112]
Length = 467
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 20/206 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE 135
+KP+ +I +GVSGGPDSMAL +LT K FN + L+A+TV+HGLR E
Sbjct: 16 IKPNSKIMIGVSGGPDSMALLHYLLT---KRSLFNLD---------LIAVTVEHGLRGEA 63
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQI 192
S ++ V + I+ E + + + ++ H QEA+R +RY+ F ++ +Q
Sbjct: 64 SLQDVEYVRNYCLQNQIQFETKQINVKEY--QKAHKLGTQEASRILRYQAFNQLMKSYQA 121
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
L +AHHADDQ E +RL+R + + L G+ + + +I C+
Sbjct: 122 DYLALAHHADDQVETVFMRLTRGTHLDSLQGIKNKRDFSTGVLIRPFLSITKETIEQYCE 181
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSL 278
D +N + RN R+ +
Sbjct: 182 QQGIIPRRDQSNEQDTYTRNYFRLHV 207
>gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
16795]
gi|164604367|gb|EDQ97832.1| tRNA(Ile)-lysidine synthetase [Clostridium bartlettii DSM 16795]
Length = 462
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGISGGPDSVCLLHILNRLKE----------QFDIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPK-----QGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
V+ +MGI+ + D PK + +++ AR +RY +F ++ + + I
Sbjct: 71 VTRLCEEMGIKYFVRSIDV----PKYCQENKLSIEDGARKLRYEMFFEIMQRTHANKIAI 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
AH+ +DQAE ++R+ R +G+ GL G+ + I + D++ I C+ N +
Sbjct: 127 AHNVNDQAETILMRIMRGTGLHGLRGIEY---IRDNVIIRPILDIERSEIESYCEQYNLN 183
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACRRTRSYVE 305
D TN P++ RN+IR+ L +F S + I S+ + Y+E
Sbjct: 184 PRIDQTNLDPIYTRNKIRLKLLPYMQENFNSNVTKAIVRMSSSIKEDSDYIE 235
>gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
Length = 307
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147
G+SGG DS+ L L + +TG + + HG R++ + +A +V
Sbjct: 25 GISGGVDSIVL--LHSLVETG------------KRPIVLHFQHGWRQDEESDAKLVEETA 70
Query: 148 SDMGIRCEIVRCDWLDGR-PKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++G+ ++L G+ P+ EA AR RYR FQ L++AHHADDQ
Sbjct: 71 KELGV-------EFLKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVLAHHADDQV 123
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E F+++L R +G G GM + + Y D I+ Q N W ED TN
Sbjct: 124 ETFLMQLIRGTGSRGW-GMDRITTLGKLVVYRPLLDFWKSDIIRFAQQRNFRWREDETNE 182
Query: 266 SPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ +RNRIR L F ++ + C
Sbjct: 183 NTHLLRNRIRKELIPFLESRFSRSIKRSLWKC 214
>gi|396462610|ref|XP_003835916.1| hypothetical protein LEMA_P052570.1 [Leptosphaeria maculans JN3]
gi|312212468|emb|CBX92551.1| hypothetical protein LEMA_P052570.1 [Leptosphaeria maculans JN3]
Length = 758
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 43/226 (19%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +SGG DSMAL L + + + + A VDH R S EEA V+
Sbjct: 105 LGFAISGGVDSMALMTL--------YYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVA 156
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++ + + ++R +W H + AR +RY+ + C H I LL+AHHA
Sbjct: 157 EQLRQKLDVPSTVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHA 216
Query: 202 DDQAELFILRLSRN---SGVLGLAGMAFSSQ---IFSSY-AYSCHDDLK--NHSILLICQ 252
DDQAE ++RL+ N SG+ G+ G + + I+ Y + S + ++ N S L++ Q
Sbjct: 217 DDQAETVLMRLANNRLRSGLQGIQGSEWIPECEGIYGLYHSGSPYTKIRPDNPSSLVVEQ 276
Query: 253 GGNR----------------------DWVEDPTNR-SPLFVRNRIR 275
GG + WVED TN+ L RN IR
Sbjct: 277 GGIQILRPLLGFEKARLVATCKKACMPWVEDKTNQIRTLTARNAIR 322
>gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J1-194]
gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL
J1-175]
gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J1-194]
Length = 648
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 13/202 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHINHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 GQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ ++ A + I+ Q
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N S + RNR R L
Sbjct: 187 AYEIDESNTSQEYTRNRYRAQL 208
>gi|350289531|gb|EGZ70756.1| hypothetical protein NEUTE2DRAFT_113802 [Neurospora tetrasperma
FGSC 2509]
Length = 839
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 78 GLKPHHR-IALGVSGGPDSMALCVLTAGWK-------TGGFNQNGEAGEFIDG-LLAITV 128
P HR I +SGG DSMAL L K + N+ G+ I G + A+ V
Sbjct: 72 AFSPRHRHIGCAISGGVDSMALAFLFHRLKQEKTLNASVSPNEQFRVGDNILGKVRAVIV 131
Query: 129 DHGLREESKEEANIVSH----RVSDMGIRCEIVRCDWLD----GRPKQGH--LQEAARDM 178
DHGLRE S EEA V+H ++ DM + I +W G + H ++ AR +
Sbjct: 132 DHGLREGSDEEAQKVAHAIKTKIGDM-VDPTIETINWESELGPGVDPKTHPSIEPLARKL 190
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY VC++H I L HH DDQ E ++R+ G GL G+ + I Y
Sbjct: 191 RYAAIAGVCLRHNICSLFTGHHEDDQYETILMRMISGRGYRGLQGIPNAVDIPECY---- 246
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVR 271
D+ N + Q G +++D + SP + R
Sbjct: 247 --DIHN-----VYQSG---YLDDQESTSPFWTR 269
>gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
Length = 325
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 24/217 (11%)
Query: 68 EAFSRRMAMAGLKPHH-RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
EAF R AMA +P H +A+G SGG DS AL A G +LA
Sbjct: 3 EAFER--AMAAFEPAHLPLAVGFSGGADSTALLAACASAWPGQ-------------VLAF 47
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQK 185
V HGL+ + + + +G+ + R +D R QG E AAR RY F
Sbjct: 48 HVHHGLQAAADDFERHCAAVCERLGVPLAVHR---VDARHAQGDSPEDAARRARYDAFAA 104
Query: 186 VC-IQHQIGVL---LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
+ + +G + ++ HHADDQ E +L LSR +G+ GLA M + Y
Sbjct: 105 MARMDTALGAIESIVLGHHADDQVETLLLALSRGAGLPGLAAMPAHVRRNGLDIYRPLLA 164
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ I + + W+EDPTN + RNRIR L
Sbjct: 165 VPGADIRAWLKSVDLPWIEDPTNEDERYTRNRIRAVL 201
>gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
Length = 335
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A+A +P +A+ +SGG DS AL + A + ++A V HGL+
Sbjct: 8 AVAAFRPRLPLAVALSGGADSTALLLACAA-------------RWPGQVVAFHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +GI + R +D R G E AAR RY+ F+ + + Q
Sbjct: 55 AADGFEQHCVALCERLGIPLWVRR---VDARHAAGQSPEDAARQARYKAFEALALDCQAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK----NH 245
I + +A HADDQ E +L LSR +GV GLA M +Q + C L+ +
Sbjct: 112 AAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM--PAQWQRAGMDWCRPLLRVAGADV 169
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
L+ +G WVEDPTN F RNRIR L
Sbjct: 170 RAWLVARG--ERWVEDPTNADERFTRNRIRRQL 200
>gi|392329391|ref|ZP_10274008.1| tRNA(Ile)-lysidine synthetase [Streptococcus canis FSL Z3-227]
gi|391420193|gb|EIQ83003.1| tRNA(Ile)-lysidine synthetase [Streptococcus canis FSL Z3-227]
Length = 428
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 134/333 (40%), Gaps = 50/333 (15%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
M Y+E ++ A HHR+ + VSGG DSM L ++ + G A
Sbjct: 1 MMTYQEIYNEIQKQAYFDKHHRVLIAVSGGVDSMNLLHFLHLYQENFQIRIGIAH----- 55
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
V+H R ES E + D I I + +G+ + +AARD RY+
Sbjct: 56 -----VNHKQRAESDMEETYLRAWAQDHNIPIYI---SYFEGKFSE----KAARDWRYKF 103
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM----AFSS-QIFSSYAYS 237
FQK+ + L+ AHH DDQAE ++RL R S + L+G+ +F + Q+ +
Sbjct: 104 FQKIMKREGYSALVTAHHLDDQAETIMMRLIRGSRLRHLSGIKSVQSFGTGQLIRPFLSF 163
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
DL I ED +N F+RNRIR + L + +Q +
Sbjct: 164 SKTDLPK-----IFH------FEDTSNEKTDFLRNRIRKNYLPLLNQENPQFVQGLNQLA 212
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDL-EILN-PSKIEDIFLSKFLALVLQFICQR 355
+NL+ +A T + V +L E N P ++ L +L
Sbjct: 213 ---------FENNLLFQAFTALTSKITVTNLVEFHNQPISVQYFLLQNYLENFPDL---- 259
Query: 356 QRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 388
V+ S K LLH I+T +G YL
Sbjct: 260 --HVKKSQFKQLLHLIQTAKQGYYPLKSGYYLL 290
>gi|403743462|ref|ZP_10953046.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122706|gb|EJY56905.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus hesperidum
URH17-3-68]
Length = 511
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 19/197 (9%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+GVSGG DSM L L G + + G + VDHGLR S E+A V+H+
Sbjct: 65 IGVSGGVDSMVLLHLCHRATQG-------SEPLLGGFSVVHVDHGLRPSSAEDAKFVTHQ 117
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ +G+ CEIV D P ++ AAR RY H GV L+AHH+ DQ E
Sbjct: 118 CARLGVACEIVPVQVKD--PCGEGIEAAARRARYEALLTRTRLHHHGVCLVAHHSRDQLE 175
Query: 207 LFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
F++R R + + GL M + ++F + +++ ++ + + ED
Sbjct: 176 TFVMRWLRGTSLAGLGAMRAVTMREGVRLFRPLLQTGRSEIEQYA-----KAWGIPFRED 230
Query: 262 PTNRSPLFVRNRIRMSL 278
TN F RNRIR L
Sbjct: 231 ETNADTRFFRNRIRHEL 247
>gi|336468222|gb|EGO56385.1| hypothetical protein NEUTE1DRAFT_83569 [Neurospora tetrasperma FGSC
2508]
Length = 802
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 78 GLKPHHR-IALGVSGGPDSMALCVLTAGWK-------TGGFNQNGEAGEFIDG-LLAITV 128
P HR I +SGG DSMAL L K + N+ G+ I G + A+ V
Sbjct: 35 AFSPRHRHIGCAISGGVDSMALAFLFHRLKQEKTLNASVSPNEQFRVGDNILGKVRAVIV 94
Query: 129 DHGLREESKEEANIVSH----RVSDMGIRCEIVRCDWLD----GRPKQGH--LQEAARDM 178
DHGLRE S EEA V+H ++ DM + I +W G + H ++ AR +
Sbjct: 95 DHGLREGSDEEAQKVAHAIKTKIGDM-VDPTIETINWESELGPGVDPKTHPSIEPLARKL 153
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY VC++H I L HH DDQ E ++R+ G GL G+ + I Y
Sbjct: 154 RYAAIAGVCLRHNICSLFTGHHEDDQYETILMRMISGRGYRGLQGIPNAVDIPECY---- 209
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVR 271
D+ N + Q G +++D + SP + R
Sbjct: 210 --DIHN-----VYQSG---YLDDQESTSPFWTR 232
>gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00]
gi|442555685|ref|YP_007365510.1| tRNA(Ile)-lysidine synthetase [Lawsonia intracellularis N343]
gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Lawsonia intracellularis PHE/MN1-00]
gi|441493132|gb|AGC49826.1| tRNA(Ile)-lysidine synthetase [Lawsonia intracellularis N343]
Length = 341
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +G SGG DSMAL ++ ID + A +DH LR ESK++AN V
Sbjct: 40 VIVGCSGGVDSMALALILHCLG-------------IDVVFA-HMDHQLRAESKDDANHVK 85
Query: 145 HRVSDMGIRCEIVRCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + RC I R D L + K+G ++E AR RY ++V ++ + HH +
Sbjct: 86 SFAAALDRRCIISRVDISGLAIKYKKG-IEETARQERYCFLEQVRKEYGAQWIATGHHLN 144
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI--CQGGNRDWVE 260
D +E +LRL R +G GLAGM + Y L LL+ N WVE
Sbjct: 145 DLSEDILLRLLRGTGWPGLAGM----KAVDKKRYLLRPLLTTRRTLLVSFLSSQNISWVE 200
Query: 261 DPTNRSPLFVRNRIRMSL 278
D +N+ F RNRIR ++
Sbjct: 201 DNSNKDITFKRNRIRHTI 218
>gi|366164046|ref|ZP_09463801.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
Length = 465
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+K R+ +GVSGGPDS +C+L W+ +F ++A+ ++H LR ES
Sbjct: 15 IKKGDRVVVGVSGGPDS--VCLLHVLWRL--------RKDFDLYIVAVHINHMLRGSESC 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V S++ I + + D + K L+EA R+ RYR F+ V +
Sbjct: 65 RDENYVKSLCSELEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIA 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AH+ +DQAE ++ + R SG+ GL GM + +I D++ + I C+ +
Sbjct: 125 VAHNKNDQAETVLMNIIRGSGLDGLKGMDYIRGRIIRPLL-----DIERNEIEAYCRENS 179
Query: 256 RDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSF 286
+ + D +N ++ RN+IR++ + L C+F
Sbjct: 180 LNPITDSSNLEDIYSRNKIRLNVIPYIDTLFGCNF 214
>gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
Length = 320
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 21/219 (9%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL +L K G Q AI V HGL+
Sbjct: 8 AMEQFAPALPLAVGLSGGADSTAL-LLACARKWPGQVQ------------AIHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQH--- 190
+ + + + + R +D R G E AAR RY+ F+ V H
Sbjct: 55 AADDFERHCQDLCKCLQVPLTVQR---VDARHAPGESPEDAARRARYKAFEAVVQAHPAP 111
Query: 191 -QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M + + + + +
Sbjct: 112 FAISSIALAQHADDQVETLLLALSRGAGVAGLAAMPARWERGGVFWHRPLLRVAGAHVRD 171
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
+ + WVEDPTN+ F RNRIR L +F S
Sbjct: 172 WLRAQGQGWVEDPTNQDERFTRNRIRAQLLPALEAAFPS 210
>gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
Length = 462
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
+I +GVSGGPDS+AL L W + + L+A VDH R EES ++A
Sbjct: 21 KIVVGVSGGPDSIAL--LHYFW--------NQRQQLQIELIAAHVDHMFRGEESFQDAMF 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I E+ R + + K G Q AARD RY +Q+ ++ + + HH
Sbjct: 71 VKDYCRKKAIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYGAEYIALGHHG 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R S AG+ F + L I C + D
Sbjct: 131 DDQVETILMRLTRGSTGSARAGIPFKRPFGDYFIIRPFLCLNRAEIEDYCLKERLNPRRD 190
Query: 262 PTNRSPLFVRNRIRMSL 278
P+N ++ RNR R +
Sbjct: 191 PSNEKGIYSRNRFRQEV 207
>gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 509
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 45/227 (19%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
Y+ F + + +G ++ +GVSGGPDS+AL + + E L+
Sbjct: 6 YQNIFEKGLIKSG----DKVLVGVSGGPDSVALLHVLYELRQ----------ELQFKLVV 51
Query: 126 ITVDHGLREESKEE-ANIVSHRVSDMGIRCEIVRCDW--------LDGRPKQGHLQEAAR 176
++HG R++S EE A+ V D+ I+ W P+QG AR
Sbjct: 52 SHLNHGFRDKSAEEDADFVKKLAEDL--ELPIIYDKWQVKDYINYYKLSPQQG-----AR 104
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
RY+ F++ L + HH DDQ E F LRL R +G GL+GM F ++
Sbjct: 105 IQRYKFFEQAAKDFGATKLALGHHIDDQVETFFLRLIRGAGTQGLSGMQFIRKL------ 158
Query: 237 SCHDDLKNHSILLICQGGNRDWVE--------DPTNRSPLFVRNRIR 275
+D L +L + + +++++ DPTN+ ++RN++R
Sbjct: 159 -NNDLLLIRPLLEVSKSEIKEYLQTNKLKYKIDPTNQETNYLRNKVR 204
>gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
Length = 329
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
+TVDHGL+ S E A V+ G+ E+VR + + GRP G + AAR+ RY+
Sbjct: 59 VTVDHGLQTGSAERAEAVARWAEQAGLSPVEVVRVE-VAGRP--GGPEAAAREARYQALV 115
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+ +H+ LL H DDQAE +L L+R +G GLAGM + ++
Sbjct: 116 EAAGRHRAAALLTGHTRDDQAETVLLALARGAGPRGLAGMPVRRDLGGVPLVRPLLEISR 175
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
C +DP N P + R+R+R L
Sbjct: 176 EQTRAACAALRLTPWQDPHNLDPAYARSRVRAQL 209
>gi|452991340|emb|CCQ97326.1| tRNA(Ile)-lysidine synthase [Clostridium ultunense Esp]
Length = 460
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 44/216 (20%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
++ + I +G+SGGPDSMAL VL K FN ++ V+HG+R EE+
Sbjct: 15 IEENDNIVIGLSGGPDSMALLYVLLDLRKEIDFN-----------IIIAHVNHGVRGEEA 63
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGV 194
+ V + ++ + R + +D K+ + +EA R +RY F+K+ + G
Sbjct: 64 LADEWFVENLAKELNLPYYSTRVN-MDQYAKERRISSEEAGRALRYGFFRKILNKIGGGK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+ +AH+ +DQAE ++R R +G+ GL GM + +N I+ G
Sbjct: 123 IAVAHNKNDQAETLLMRFFRGTGIDGLKGMEY----------------RNGDIIRPILGI 166
Query: 255 NRDWVE------------DPTNRSPLFVRNRIRMSL 278
R+ +E D TN P++ RNRIR+ L
Sbjct: 167 EREEIEKYLLDNNFETRLDKTNLEPIYNRNRIRLEL 202
>gi|358396226|gb|EHK45607.1| hypothetical protein TRIATDRAFT_219144 [Trichoderma atroviride IMI
206040]
Length = 704
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 86 ALGVSGGPDSMALCVLTAG----WKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+L +SGG DSMA+ L + +K N F AI VDH LR+ES +EA+
Sbjct: 46 SLAISGGVDSMAMAFLFSSLLKVYKGIKIADNPAESAF-----AIVVDHKLRDESSQEAS 100
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQG-------HLQEAARDMRYRLFQKVCIQHQIGV 194
V+ + +G++ I +W + R QG +++ AR MRY+ C Q+
Sbjct: 101 RVTQELKKIGLKSVIKPLNWREQR-WQGIEPTTLPNVESLARTMRYQALGSTCRYLQVPS 159
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
L AHH DDQ E ++RL G GL G+ ++ I Y
Sbjct: 160 LFFAHHQDDQYETVLMRLLAGHGYRGLQGIREANAIPECY 199
>gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
Length = 445
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A+ ++H L+ + + +G+ ++ R + G G L+E+AR RY +F+
Sbjct: 56 ALHINHQLQSNHDQTERACIDLCAGLGVELQVRRVNVATG---AGSLEESARAARYEVFR 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+V + + LL+AHHADDQAE + RL R +GV GLAGM S + + Y +
Sbjct: 113 EVLGDNDL--LLMAHHADDQAETVLFRLLRGTGVNGLAGMPVSRSLGRGHLYRPWLGVSR 170
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ + + W EDP+N+S + RN +R S+
Sbjct: 171 SRLEQVAREQGVSWAEDPSNQSEVHDRNYLRHSV 204
>gi|383755002|ref|YP_005433905.1| putative tRNA(Ile)-lysidine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381367054|dbj|BAL83882.1| putative tRNA(Ile)-lysidine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 466
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 90/205 (43%), Gaps = 29/205 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI SGG DSMAL L W+ A F + +HG+R E S +A
Sbjct: 23 RILAACSGGADSMAL--LDILWRL--------APRFQWQVAVAHYEHGIRGEASLADARF 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ I C + D + H L++AARD+RY Q++C + G + AHHA
Sbjct: 73 VADFCQKRRIPCFVEHGDVPGAAAENSHTLEQAARDLRYAFLQRICREKGFGYIATAHHA 132
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--------KNHSILLICQG 253
DDQAE ++R+ R +GV GL M YS + L I+ C+
Sbjct: 133 DDQAETVLMRILRGTGVKGLGAM---------RPYSGDEILLVRPLLGASKAEIMAYCEQ 183
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSL 278
+ ED TN RNR+R+ L
Sbjct: 184 AGLAFREDATNSVADCTRNRLRLEL 208
>gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
35910]
gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
35910]
Length = 449
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 33/262 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEAN 141
H L VSGG DSM L L F Q + +F +++ LR +S +
Sbjct: 21 HTFLLAVSGGVDSMVLASLFRD-----FGQEIQDSKF--RFQVAHINYKLRGNDSDLDQK 73
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I+ + D +P + +Q AR++RYR F+ + + ++ L+ AHH
Sbjct: 74 TVQDFCEKNHIKFHLYEVSEKDQKP-ENSIQLWARELRYRFFKTIQEKEKLEFLVTAHHL 132
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD-----LKNHS---ILLICQG 253
+DQ E FI+ LS+ +G+ GL+G+ HD+ L N S I +
Sbjct: 133 NDQLETFIINLSKAAGINGLSGIP------------SHDNNILRPLLNFSKKEIYQFAEL 180
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSN 310
+ ++ ED +N+ ++RN+IR + + ++ F + S +T+ +V+
Sbjct: 181 NHIEFREDLSNKKNDYLRNKIRNQIVPMLMETNDHFLDNFRKSSSLLNQTKDFVQKQIQE 240
Query: 311 LINEAVTVMDQGYAVIDLEILN 332
+ N +TV +Q Y ++ E LN
Sbjct: 241 IEN-NLTVFNQDYKILSKEKLN 261
>gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY]
gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY]
Length = 335
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A+A +P +A+ +SGG DS AL + A + ++A V HGL+
Sbjct: 8 AVAAFRPRLPLAVALSGGADSTALLLACAA-------------RWPGQVVAFHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +GI + R +D R G E AAR +RY+ F+ + + Q
Sbjct: 55 AADGFEQHCVALCERLGIPLWVRR---VDARHAAGQSPEDAARQVRYKAFEALALDCQAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M +Q + C L+ +
Sbjct: 112 AAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM--PAQWQRAGMDWCRPLLRVAGADV 169
Query: 250 ICQGGNRD--WVEDPTNRSPLFVRNRIRMSL 278
RD WVEDPTN F RNRIR L
Sbjct: 170 RAWLVARDERWVEDPTNADERFTRNRIRRQL 200
>gi|311743365|ref|ZP_07717172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Aeromicrobium marinum DSM 15272]
gi|311313433|gb|EFQ83343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Aeromicrobium marinum DSM 15272]
Length = 324
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P + LGVSGG DS+AL +TA F EA + + A+ VDH L+ S E
Sbjct: 23 VGPGSSVVLGVSGGADSLALAAVTA------FVARREAWD----VSAVVVDHDLQPGSSE 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A + + +G+R E+V + G + AAR R+ + + V+ +A
Sbjct: 73 VAARAAEQCRGLGLRAEVVGVE----VGSAGGPEAAARTARHGALRSAALAAGAEVICLA 128
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
H DDQAE +L L R SG L+GMA + D + IC
Sbjct: 129 HTLDDQAETVLLGLGRGSGARSLSGMAGVDGLVRRPLLGLRRRDTEQ-----ICAAHGLP 183
Query: 258 WVEDPTNRSPLFVRNRIR 275
W +DP NR P R R+R
Sbjct: 184 WWDDPHNRDPAHRRVRVR 201
>gi|392982638|ref|YP_006481225.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa DK2]
gi|416854811|ref|ZP_11911141.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 138244]
gi|419754770|ref|ZP_14281128.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PADK2_CF510]
gi|334843560|gb|EGM22147.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 138244]
gi|384398588|gb|EIE44993.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PADK2_CF510]
gi|392318143|gb|AFM63523.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa DK2]
gi|453047355|gb|EME95069.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PA21_ST175]
Length = 442
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
Length = 480
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 23/258 (8%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-E 134
A + P + +GVSGGPDS+AL + E +++ V HGLR
Sbjct: 25 AMIAPGEAVLVGVSGGPDSVALLHALVRLQP----------ELAVARVSVAHVHHGLRGA 74
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+ + V+ +G+ + D R +++AAR RYR F H
Sbjct: 75 EADADQAFVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYH 134
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+ AHHA D AE ++ L R +G GL+G+ I + +D IL
Sbjct: 135 KIATAHHAGDNAEWVLMNLVRGAGPEGLSGIPPVRENIIRPLIHVSRED-----ILAFLT 189
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA----VISACRRTRSYVEHVC 308
G D+VED TN F RNR+R L L + + A V R ++ +
Sbjct: 190 HGGMDYVEDSTNADLTFTRNRVRHHLLPLIEEHYNPGIAACLNRVAEIFREESLWIRDMV 249
Query: 309 SNLINEAVTVMDQGYAVI 326
S L +AV + + G V+
Sbjct: 250 SGLFEQAVLLCEPGRVVL 267
>gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1]
gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1]
Length = 324
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 20/206 (9%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
RM M GL +A+G SGG DS AL ++ Q G + A VDHG
Sbjct: 11 RMQMDGLPAE--VAVGWSGGADSTALLLM--------LQQQGYR------VQAWHVDHGW 54
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
RE S +E +++ + I ++ R GR ++ AR RY F++ I
Sbjct: 55 RESSIKETELLAEKARGWEIELQVARLPAPSGRNREAE----ARKGRYAQFEQWSEATGI 110
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
L + HH DDQAE +R+ + +G+ G GM + + +K + +
Sbjct: 111 TTLCLGHHRDDQAETVCMRMLQGAGISGCRGMQQRRRHGRLDIFRPLLQVKAGELKAALR 170
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ +W+EDP+N RNRIR L
Sbjct: 171 AADINWLEDPSNNDMTIWRNRIRQGL 196
>gi|408388026|gb|EKJ67721.1| hypothetical protein FPSE_12092 [Fusarium pseudograminearum CS3096]
Length = 705
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A RI L VSGG DSMAL L + + F + A + G +A+ VDH L
Sbjct: 58 RFPTARFARPQRIILAVSGGVDSMALAFLVSKF-IRMFRGSKVADNPVHGAMAVVVDHKL 116
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
R+ S EA V + + I+ + W D R P++ +++ AR RYR ++
Sbjct: 117 RDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLARTYRYRTLGRI 176
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
C L AHH DDQ E ++RL G GL G+ ++ I Y
Sbjct: 177 CEFMGADSLFFAHHRDDQYETVLMRLLGGHGYRGLQGIREANSIPECY 224
>gi|226294081|gb|EEH49501.1| PP-loop family protein [Paracoccidioides brasiliensis Pb18]
Length = 690
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R++ KP RIAL VSGGPDSMAL L + + FI VDH
Sbjct: 31 RVSKKPSKPS-RIALAVSGGPDSMALAFLCKQLISERLIPDLNVKPFI-------VDHKA 82
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-PKQ-GHLQEAARDMRYRLFQKVCIQH 190
RE S EEA+ V+ + D+G I+ W G P + + +AR RY++ C ++
Sbjct: 83 REGSTEEAHNVASWLKDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEY 142
Query: 191 QIGVLLIAHHADDQAELFILRLSRN----SGVLGLAGMA 225
I L + HH DD E + RL R SG G+A +
Sbjct: 143 NIQALFLGHHQDDTVETVLSRLVRGQRQASGFTGVASVG 181
>gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723551|sp|Q10441.1|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
[Schizosaccharomyces pombe]
Length = 456
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 102/231 (44%), Gaps = 21/231 (9%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D K +E ++ +++ H R+ + VSGG DSM L + G +FI
Sbjct: 2 DTIKLKEFYNSLVSIRRRVGHRRLGIAVSGGVDSMLLSWFMKESQI----MFGWPNQFI- 56
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRY 180
A VDH +R+ S EEA ++ M I + +W D +L+ AR+ RY
Sbjct: 57 ---AFVVDHRIRKNSTEEALQTIWNLNRMLIPNVYLNINWGNDDVHSLTNLETIAREHRY 113
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILR-LSRNSGVL-GLAGMAFSSQIFSSYAYSC 238
++ + CI H I + AHHA+DQAE +R L R G GL M SQI S +
Sbjct: 114 QVLTRACITHNIRHICTAHHANDQAETIFMRLLRRKPGTWGGLCAMKPVSQIPESDSICG 173
Query: 239 HDDLK---------NHSILLICQGGNRDWVEDPTNRS-PLFVRNRIRMSLG 279
+++ + IL + W EDPTN L RN IR L
Sbjct: 174 ASNIELLRPLLPYYKNQILNTAKQHGIAWEEDPTNADINLTPRNAIRRFLN 224
>gi|386067673|ref|YP_005982977.1| hypothetical protein NCGM2_4769 [Pseudomonas aeruginosa NCGM2.S1]
gi|348036232|dbj|BAK91592.1| hypothetical protein NCGM2_4769 [Pseudomonas aeruginosa NCGM2.S1]
Length = 442
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083]
gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083]
Length = 389
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 38/268 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS AL VL F + L AIT+DHGLR ++ EA +
Sbjct: 13 LGIALSGGSDSTALLVLA----VDAFGA--------ENLQAITIDHGLRAAAQAEARQAA 60
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ--HQIGVLLIAHHAD 202
+ +G+ I DG LQ AR+ RY + I + + H D
Sbjct: 61 KLCASLGVPHTIRTLALKDG----PDLQARARNARYMALGDWARAQLNSIPAIALGHTKD 116
Query: 203 DQAELFILRLSRNSGVLGL---------AGMAFSSQIFSSYAYSCHDDLKNHSILLICQG 253
D +E F++RL+R SGV GL AGM F + ++ H L I
Sbjct: 117 DVSETFLMRLARGSGVDGLATMPEYFERAGMVFKRPLLAASRAELHAMLTKRGI------ 170
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSNLI 312
W EDP+N+ P F R ++R + L + S+ L R +E+ N I
Sbjct: 171 ---TWSEDPSNQDPRFTRVKMRQAQATLDTLDLTSDRLSQTADWMRAASEVLENAADNWI 227
Query: 313 NEAVTVMDQGYAVIDLEILNPSKIEDIF 340
+ G V+DL+ L + E F
Sbjct: 228 TTHA-YTEYGDVVLDLQALRTAPKETAF 254
>gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
Length = 462
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 120/283 (42%), Gaps = 22/283 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ +GVSGGPDS+AL L WK A AI DH R EES +EA
Sbjct: 21 KVLVGVSGGPDSLALLHLL--WKKRKVWGAEPA--------AIHFDHMFRGEESYQEARF 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + I E+ R D + G Q AAR+ RYR F++ L + HH
Sbjct: 71 VQSFCEERNIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASGASYLALGHHG 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R S +G+ FS L+ I C D D
Sbjct: 131 DDQMETILMRLTRGSTGEARSGIPFSRPFGGGEIIRPFLCLERGEIEEYCLSNELDPRRD 190
Query: 262 PTNRSPLFVRNRIRMS-LGDLSSCSFKS--ELQAVISACRRTRSYVEHVCSNLINEAVTV 318
P+N ++ RNR R + L L S + ++ Q R ++ + + +N +
Sbjct: 191 PSNEKDVYSRNRFRRNVLPFLKSENPQAHVHFQRFSEELRGDEQLLQELTAREMNTVMKK 250
Query: 319 MDQGYAVIDLE--ILNPSKIEDIFLSKFLALVLQFICQRQRPV 359
+ ID E +L P ++ + + L+L ++ Q +RP
Sbjct: 251 KEDAEITIDAERFMLMPMPLQ----RRGIQLILNYLYQ-ERPA 288
>gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42]
Length = 462
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 19/252 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++R+ R +G+ GL G+ + I + D++ + I C+ N + D
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDY---IRDNCIIRPILDVERNEIEEYCEAYNLNPRID 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSYVEHVCSNLINEAVT 317
TN ++ RN+IR+ L +F S +++++ ++ + Y+E E
Sbjct: 188 KTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVSN 247
Query: 318 VMDQGYAVIDLE 329
+ ++G+ I+L+
Sbjct: 248 IKEKGFVEINLD 259
>gi|354585809|ref|ZP_09004640.1| tRNA(Ile)-lysidine synthetase [Paenibacillus lactis 154]
gi|353184134|gb|EHB49662.1| tRNA(Ile)-lysidine synthetase [Paenibacillus lactis 154]
Length = 476
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGGPDS+AL + T L+ V HG R ES EA V
Sbjct: 29 IVVAVSGGPDSVALLHVLHEISTKHTPLK---------LVCAHVHHGFRAESDAEAEFVR 79
Query: 145 HRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+G+ EI D +++ K G QEAAR+ RY + + + +AHHA
Sbjct: 80 ELAESLGLPLEIAFADIPSYMEESGKGG--QEAAREKRYEFLLQTARTYDARSVALAHHA 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE +++L R SG+ GL+GM + + + IL +C+ + D
Sbjct: 138 DDQAETVMMKLLRGSGLSGLSGMRWKRTEKNVELIRPFLRINKADILELCRRCGFSYAID 197
Query: 262 PTNRSPLFVRNRIRMSL 278
TN + RN IR+ +
Sbjct: 198 YTNLQTKYRRNAIRLEV 214
>gi|423080871|ref|ZP_17069486.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 002-P50-2011]
gi|423087591|ref|ZP_17075978.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 050-P50-2011]
gi|357544624|gb|EHJ26626.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 050-P50-2011]
gi|357551951|gb|EHJ33730.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 002-P50-2011]
Length = 462
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 19/252 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIVFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++R+ R +G+ GL G+ + I + D++ + I C+ N + D
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDY---IRDNCIIRPILDVERNEIEEYCEAYNLNPRID 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSYVEHVCSNLINEAVT 317
TN ++ RN+IR+ L +F S +++++ ++ + Y+E E
Sbjct: 188 KTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVSN 247
Query: 318 VMDQGYAVIDLE 329
+ ++G+ I+L+
Sbjct: 248 IKEKGFVEINLD 259
>gi|126701186|ref|YP_001090083.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
difficile 630]
gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26]
gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932]
gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255]
gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55]
gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34]
gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79]
gi|260685080|ref|YP_003216365.1| ATPase [Clostridium difficile CD196]
gi|260688738|ref|YP_003219872.1| ATPase [Clostridium difficile R20291]
gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58]
gi|384362756|ref|YP_006200608.1| putative ATPase [Clostridium difficile BI1]
gi|423089069|ref|ZP_17077435.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 70-100-2010]
gi|122973554|sp|Q181G3.1|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
difficile 630]
gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196]
gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291]
gi|357558744|gb|EHJ40224.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 70-100-2010]
Length = 462
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 19/252 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++R+ R +G+ GL G+ + I + D++ + I C+ N + D
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDY---IRDNCIIRPILDVERNEIEEYCEAYNLNPRID 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSYVEHVCSNLINEAVT 317
TN ++ RN+IR+ L +F S +++++ ++ + Y+E E
Sbjct: 188 KTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVSN 247
Query: 318 VMDQGYAVIDLE 329
+ ++G+ I+L+
Sbjct: 248 IKEKGFVEINLD 259
>gi|338176365|ref|YP_004653175.1| tRNA(Ile)-lysidine synthase [Parachlamydia acanthamoebae UV-7]
gi|336480723|emb|CCB87321.1| tRNA(Ile)-lysidine synthase [Parachlamydia acanthamoebae UV-7]
Length = 426
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANIV 143
I +G+SGGPDS+AL L + + I L I +DH R+ES++EA +
Sbjct: 19 ILVGLSGGPDSIALLYLLL-----------KCAKMIPLKLGIAHIDHRWRQESEKEAETL 67
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + LD G+L+ A RD+RY+ F +V + +++ HH DD
Sbjct: 68 KTLAESLHVPFHLKV---LDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDD 124
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE + R+ + ++ L G+A + Q + ++ IL + + D T
Sbjct: 125 QAETILKRILEGASLVKLRGIAETKQQGGLAIWRPLLEVDKAKILSWLSKHDIPFFNDST 184
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
N P F+R ++R + + F E+++ + + +EH
Sbjct: 185 NLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEH 227
>gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01]
gi|384043578|ref|YP_005482322.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-12]
gi|384052095|ref|YP_005479158.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-03]
gi|384055204|ref|YP_005488298.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-07]
gi|384058437|ref|YP_005491104.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-22]
gi|384061078|ref|YP_005500206.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-26]
gi|384064370|ref|YP_005485012.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-32]
gi|384120383|ref|YP_005503007.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01]
gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-03]
gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-07]
gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-22]
gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-26]
gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-32]
gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-12]
Length = 435
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 27/199 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR ES +EA
Sbjct: 47 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGQEAQQTI 92
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 93 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 149
Query: 205 AELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
AE +R + +SG GLAGM + + ++ L+N + + +WV
Sbjct: 150 AETVWMRQNSSSGPEGLAGMGWITVRPDIRLIRPLLGFSRTALRN-----TLRQAHLEWV 204
Query: 260 EDPTNRSPLFVRNRIRMSL 278
+DP+N+ R R+R L
Sbjct: 205 DDPSNQDQRAERVRLRFLL 223
>gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 426
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 15/223 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANIV 143
I +G+SGGPDS+AL L + + I L I +DH R+ES++EA +
Sbjct: 19 ILVGLSGGPDSIALLYLLL-----------KCAKMIPLKLGIAHIDHRWRQESEKEAETL 67
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + LD G+L+ A RD+RY+ F +V + +++ HH DD
Sbjct: 68 KTLAESLHVPFHLKV---LDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDD 124
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE + R+ + ++ L G+A + Q + ++ IL + + D T
Sbjct: 125 QAETILKRILEGASLVKLRGIAETKQQGGLAIWRPLLEVDKAKILSWLSKHDIPFFNDST 184
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
N P F+R ++R + + F E+++ + + +EH
Sbjct: 185 NLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEH 227
>gi|421852948|ref|ZP_16285630.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371478799|dbj|GAB30833.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 430
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 34/253 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR ES +EA
Sbjct: 42 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGQEAQQTI 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 88 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
AE +R + +SG GLAGM + + ++ L+N + + +WV
Sbjct: 145 AETVWMRQNSSSGPEGLAGMGWITVRPDIRLIRPLLGFSRAALRN-----TLRQAHLEWV 199
Query: 260 EDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+DP+N+ R R+R L D + +K +Q+ R+ R + + V
Sbjct: 200 DDPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLVQH-----VV 254
Query: 318 VMDQGYAVIDLEI 330
+ +G+A + E+
Sbjct: 255 MCPEGWAALGPEL 267
>gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2]
Length = 442
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRSLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1]
gi|418586127|ref|ZP_13150173.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P1]
gi|418589445|ref|ZP_13153367.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P2]
gi|421518181|ref|ZP_15964855.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PAO579]
gi|451987782|ref|ZP_21935934.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 18A]
gi|61216741|sp|Q9HXZ3.1|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|375043801|gb|EHS36417.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051679|gb|EHS44145.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P2]
gi|404347663|gb|EJZ74012.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PAO579]
gi|451754541|emb|CCQ88457.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 18A]
Length = 442
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|407979076|ref|ZP_11159898.1| tRNA(Ile)-lysidine synthase [Bacillus sp. HYC-10]
gi|407414292|gb|EKF35945.1| tRNA(Ile)-lysidine synthase [Bacillus sp. HYC-10]
Length = 467
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 18/239 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRQKGSFQ-----------LIAAHVDHMFRGEESFADLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I E R + K+ L Q AAR+ RY F+++ Q+ + +AHH
Sbjct: 69 EAYCKEHEILFESARIQ-VTQYAKENRLNKQAAARECRYAFFRQLMEQYNAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R + +GLAG+ + +L C+ + +V D
Sbjct: 128 DDQVETMMMRLTRGTVGIGLAGIQAKRPFQEGWLIRPLIGYSKDDVLTACEKEHVPYVID 187
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+N + ++RNRIR + + + Q V Y++ + +N+ +T
Sbjct: 188 QSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEHYLQALTKKQMNQVIT 246
>gi|421893882|ref|ZP_16324375.1| tRNA(Ile)-lysidine synthetase [Pediococcus pentosaceus IE-3]
gi|385273367|emb|CCG89747.1| tRNA(Ile)-lysidine synthetase [Pediococcus pentosaceus IE-3]
Length = 456
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 123 LLAITVDHGLREESKEEANIV-----SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
L+ V+H LRE+S EE + H+++ M DW + Q ++ AAR+
Sbjct: 49 LIVAHVNHQLREQSIEEERFLHKWCRQHQITFM-------ETDWPKSQHPQHGVEAAARE 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F++V Q VLL AH+AD+QAE F++++ R + L G+ +
Sbjct: 102 FRYTFFKQVMHDQQAQVLLTAHNADEQAENFVMQVIRGGWLNQLNGIPERRTFAQGWLIR 161
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
++ Q W ED TNR+ F+RNR+R + +F+ E V+
Sbjct: 162 PFLKFTKQFLIETAQENKLRWFEDQTNRTTEFLRNRVRNEI----IPAFRKENPRVVEHI 217
Query: 298 RRTRSYVEHVCSNLINEAV 316
+ + + SNL+++ V
Sbjct: 218 QHYQDQLLE-QSNLVDQVV 235
>gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537]
Length = 442
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 42/277 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+ L L A KT EFI V++ LR +S +A
Sbjct: 17 KVIVAVSGGVDSVVL--LDALIKTQP------QVEFI----VAHVNYHLRPQSDNDA--- 61
Query: 144 SHRVSDMGIRCEIV--RCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
H V+++ + +V + DW +D QG ++EAARD RY F+++ ++ +L+AH
Sbjct: 62 -HFVAEIAKKYHVVLRKVDWQGID----QGSVEEAARDFRYCFFEELANEYATNTILVAH 116
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSILLICQGGNRDW 258
HA+DQAE +L+L R + L+GM + Q+ + I L Q +W
Sbjct: 117 HANDQAETILLKLVRGGKLSQLSGMQPTRQVSKTVQIVRPLLPFSKQRIKLYAQQHRLEW 176
Query: 259 VEDPTNRSPLFV-RNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
ED TN + RN IR+ + L + + + ++ S ++ +
Sbjct: 177 CEDSTNADSAYTPRNLIRLEI-----------LPRLTTINHKAIEHINQTASQIMQQEQM 225
Query: 318 VMDQGYAVIDLEILNPSK----IEDIFLSKFLALVLQ 350
+ Q +D +I+ K I +I+LS L++ LQ
Sbjct: 226 ITMQATQYLD-DIMQSQKSWGDIPEIWLSAVLSIWLQ 261
>gi|451947816|ref|YP_007468411.1| tRNA(Ile)-lysidine synthetase [Desulfocapsa sulfexigens DSM 10523]
gi|451907164|gb|AGF78758.1| tRNA(Ile)-lysidine synthetase [Desulfocapsa sulfexigens DSM 10523]
Length = 464
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEE 139
P + LGVSGG DS++L + + +A+ +DHGLR E++ E
Sbjct: 20 PKSSVVLGVSGGADSISLLHILSNLFPATRR------------IAVYIDHGLRPLETEAE 67
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+V + E + D + +G L+EAAR++RY+ + + + H V+ +
Sbjct: 68 KKLVREQAMACSAHFESLTIDVTGEQQAKGCSLEEAARELRYQALETLRVSHGASVIAVG 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
H ADDQAE +LRL R G GL+GM I D L ++ + N
Sbjct: 128 HTADDQAEEVLLRLIRGCGSRGLSGMDLHHGHIVRPLLQETKDTLLSY-----LKEQNIP 182
Query: 258 WVEDPTNRSPLFVRNRIRMSL 278
+ D +N F+RNRIR+ L
Sbjct: 183 FCLDSSNLDRRFLRNRIRLEL 203
>gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
Length = 355
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 27/244 (11%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G+ PHH + + SGG DS AL V+ + G + L+ +DH LR ES
Sbjct: 45 GVSPHH-VIVAFSGGADSTALAVIL---RCLGVS-----------LVLAHLDHRLRPESG 89
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +G+ C + R D R + L++A R RY F + + ++
Sbjct: 90 EEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEWVV 149
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAF---SSQIFSSYAYSCHDDLKNHSILLICQG 253
HH DD +E ++RL R SG GL GM + ++ + +L+ +
Sbjct: 150 TGHHLDDLSEDVLMRLVRGSGWPGLGGMKAVDPARRLLRPLLGTPRAELEA-----FLRS 204
Query: 254 GNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 310
DW+ED +NRS F RNR+R + L + SF + + R Y V +
Sbjct: 205 LGVDWIEDASNRSDAFRRNRMRNHVIPLLKAENPSFSRSTRTLWELAREDEHYWNEVLAP 264
Query: 311 LINE 314
+ +
Sbjct: 265 VFAQ 268
>gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
Length = 462
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 16/202 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P R+ +G+SGG DS++L ++ K E L A+ V HGLR E +
Sbjct: 19 LVPGDRVIIGLSGGADSVSLLMILHELKN----------ELNIELFAVHVHHGLRGEEAD 68
Query: 139 EANIVSHRVSD-MGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ + +S+ +G+ V + + R +EA R +RYR+ ++ + H +
Sbjct: 69 RDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEEQRLAHHASKIA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQAE + L R SG+ G+ GM S + IL +
Sbjct: 129 VAHHADDQAETVLYNLFRGSGLKGIGGMKPVRDTIIRPLLS----VTRKEILAYLEEKEI 184
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ ED TN ++RNR+R +
Sbjct: 185 SYCEDSTNSGTDYIRNRLRHEI 206
>gi|406890399|gb|EKD36309.1| hypothetical protein ACD_75C01558G0004 [uncultured bacterium]
Length = 500
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGG DS+AL L A E LLA+ +DHGLR +E+ E I
Sbjct: 35 RIIVAVSGGSDSLALLYLL------------RAIEIPVQLLAVYIDHGLRPQETPYEQEI 82
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ ++G+ D + H +EAAR +RY +K+ ++ V+ H A
Sbjct: 83 IRKCCQELGVPYLTASVDVHRLIASEKHSPEEAARILRYDALEKLRREYDARVIATGHTA 142
Query: 202 DDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DDQ E F LRL R S GL+GMA ++ + L ++ L Q N W
Sbjct: 143 DDQVEEFFLRLIRGSSRRGLSGMAVRRDRLIRPLLHETKHALADY---LTSQ--NVGWCL 197
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
D +N F+RNR+R+ L L F ++ +
Sbjct: 198 DSSNLERHFLRNRVRLDLLPLLENEFNPAIRRTV 231
>gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
Length = 435
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 17/191 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+ L L + W+ LLA+ VDHGLR ES EA+
Sbjct: 47 VAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGLEAHQTL 92
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C +H LL+ H ADD
Sbjct: 93 ARLQAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADDL 149
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE +R + +SG GLAGM + + ++ + + +WV+DP+N
Sbjct: 150 AETVWMRQNSSSGPEGLAGMGWITVRPDIRLIRPMLGFSRQALRNTLRQAHVEWVDDPSN 209
Query: 265 RSPLFVRNRIR 275
+ R R+R
Sbjct: 210 QDQRAERVRLR 220
>gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
gi|386038742|ref|YP_005957696.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa M1]
gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
gi|343094780|emb|CCC82989.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa M1]
Length = 482
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLVCAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + + + E++R D + G QEAAR++RY + + + +A
Sbjct: 76 AEEVHNIARKLKLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE +L L R SG GLAGM + + + ++ C +
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLARNEKNVQLIRPLLRMYKADLIEYCNFHGFSY 195
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V D TN S + RN IRM +
Sbjct: 196 VTDSTNLSSKYRRNAIRMDV 215
>gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
Length = 476
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 17/242 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGGPDS+AL + N L+ V HG R ES +EA +V
Sbjct: 29 IVVAVSGGPDSVALLHVL---HEISLNHTPLR------LICAHVHHGFRTESDQEAEMVR 79
Query: 145 HRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+G+ E D +++ K G QEAAR+ RY + ++ + +AHHA
Sbjct: 80 ELAERLGLPLETAFIDIPAYMEESGKGG--QEAAREKRYEFLLQTAQKYNARSVALAHHA 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE ++RL R SG+ GLAG+ F + I+ +C+ + D
Sbjct: 138 DDQAETVLMRLLRGSGLPGLAGIKFKRTEKKVELIRPFLRMYKADIVELCRVCGFQYAVD 197
Query: 262 PTNRSPLFVRNRIRMSL---GDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
+N + RN IR+ + + + F S L + ++ +VE + V
Sbjct: 198 NSNLQTKYRRNAIRLEVLPFLEQYNGQFSSSLNQLAEIVQQEDGFVEREAAKQFRRMVQE 257
Query: 319 MD 320
D
Sbjct: 258 ND 259
>gi|427408307|ref|ZP_18898509.1| tRNA(Ile)-lysidine synthetase [Sphingobium yanoikuyae ATCC 51230]
gi|425713646|gb|EKU76659.1| tRNA(Ile)-lysidine synthetase [Sphingobium yanoikuyae ATCC 51230]
Length = 315
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRVAAATLDHGLRAESAAEAAMV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ + + + G++Q+ AR RY + + +L AHHADD
Sbjct: 75 ARWCAERRVPHATLAPE----TEVSGNIQDWARRQRYAQLEAWRAGAGLDWILTAHHADD 130
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
Q E ++RL+R SGV GLAG+ A + ++ L+ H+ Q G +V DP
Sbjct: 131 QLETLLMRLNRGSGVGGLAGVRARAGRVLRPLLTVRKAQLQAHA----DQAG-LPYVLDP 185
Query: 263 TNRSPLFVRNRIRMSL 278
+N P F R +R L
Sbjct: 186 SNADPRFDRAALRKRL 201
>gi|418633001|ref|ZP_13195419.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU129]
gi|420191273|ref|ZP_14697205.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM037]
gi|420204990|ref|ZP_14710527.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM015]
gi|374840064|gb|EHS03568.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU129]
gi|394257797|gb|EJE02705.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM037]
gi|394271569|gb|EJE16061.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM015]
Length = 431
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
gi|385780194|ref|YP_005689359.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
gi|419724092|ref|ZP_14251174.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum AD2]
gi|419726680|ref|ZP_14253701.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum YS]
gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
gi|380769964|gb|EIC03863.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum YS]
gi|380779869|gb|EIC09585.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum AD2]
Length = 470
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 121/257 (47%), Gaps = 26/257 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLR--EESKEEA 140
+I +GVSGGPDS+ L + + E +D GL+A+ V+H LR E S +EA
Sbjct: 20 KIVVGVSGGPDSVCLLHILCKLR-----------ESMDLGLVAVHVNHMLRGDEASGDEA 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + + + R D + ++ L+E R RYRLF++V + +AH
Sbjct: 69 -FVENLCKKLNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVADNFGAQRIAVAH 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
+ +DQAE ++ + R +G+ GL GM + +I +++N+ C+ N +
Sbjct: 128 NKNDQAETVLMNIIRGTGLDGLRGMDYIRGRIIRPLLGVERTEIENY-----CRIHNLNP 182
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA----CRRTRSYVEHVCSNLINE 314
D TN ++ RN+IR+ L F +++ IS + S++E + N+
Sbjct: 183 RIDSTNLENIYTRNKIRLDLIPYIEKLFNADIVNGISKMADLIKDDVSFIESRTDEIYNK 242
Query: 315 AVTVMDQGYAVIDLEIL 331
A D ++DL IL
Sbjct: 243 AKIKSDDKGVILDLNIL 259
>gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1]
gi|416873823|ref|ZP_11917726.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 152504]
gi|334844237|gb|EGM22814.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 152504]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|355640018|ref|ZP_09051508.1| tRNA(Ile)-lysidine synthase [Pseudomonas sp. 2_1_26]
gi|354831538|gb|EHF15550.1| tRNA(Ile)-lysidine synthase [Pseudomonas sp. 2_1_26]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
Length = 338
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 38/262 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DS+AL A + ++ L +DHGLR ES +E V
Sbjct: 35 VMLAVSGGVDSVALLAWAAAMRD----------KWGARLFCAHLDHGLRPESSQERQRVH 84
Query: 145 HRVSDMGIRCEIVRCDWLDGRPK--------QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ I C GR + Q ++EA R +RYR + + + LL
Sbjct: 85 ALCDQLAIPC-------FSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLL 137
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAF---SSQIFSSYAYSCHDDLKNHSILLICQG 253
AHHA+D AE ++R R +G LAGMA ++ + + H + + Q
Sbjct: 138 TAHHANDLAEDSLMRFIRGTGWPALAGMAAWDPGRRLLRPFLLT-----PKHRLHALVQA 192
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W ED +NR P + RNRIR + L + L+ + R+ ++ + +
Sbjct: 193 AGLCWEEDSSNRDPAYQRNRIRHQILPLLIKENPNFLETIAQTWRQAQAD-----TAAFD 247
Query: 314 EAVTVMDQGYAVIDLEILNPSK 335
+T Q V+ +L P +
Sbjct: 248 TMLTAARQAERVVKQGLLAPRQ 269
>gi|334345241|ref|YP_004553793.1| tRNA(Ile)-lysidine synthase [Sphingobium chlorophenolicum L-1]
gi|334101863|gb|AEG49287.1| tRNA(Ile)-lysidine synthase [Sphingobium chlorophenolicum L-1]
Length = 314
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 55/212 (25%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L A F + A TVDHGLRE S +EA +V
Sbjct: 25 RFGVAVSGGPDSMALLDLAAR-------------AFSGRVEAATVDHGLREASADEAAMV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + GI + PK +G++Q AR RY L ++ + LL AHH
Sbjct: 72 ADWCGNAGIAHATLH-------PKGAVRGNVQSWARSQRYALLEEWRTAQGLDWLLTAHH 124
Query: 201 ADDQAELFILRLSR------------NSGVL--GLAGMAFSSQIFSSYAYSCHDDLKNHS 246
ADDQ E ++RL+R GV+ L GM + + AY+ DL
Sbjct: 125 ADDQLETLLMRLNRGAGVGGLAGVRARQGVVLRPLLGMRKAELL----AYALEQDLP--- 177
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+++DP+N P F R +R +L
Sbjct: 178 -----------YIDDPSNSDPRFDRAALRSAL 198
>gi|429762463|ref|ZP_19294853.1| tRNA(Ile)-lysidine synthetase [Anaerostipes hadrus DSM 3319]
gi|429181708|gb|EKY22863.1| tRNA(Ile)-lysidine synthetase [Anaerostipes hadrus DSM 3319]
Length = 480
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I +GVSGG DS+ L ++ N+ E+ + + ++H +R E+ ++ V
Sbjct: 32 IIIGVSGGADSVYLLLI--------LNELRESMNLT--ITVVHINHMIRREAVDDQKFVQ 81
Query: 145 HRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I C+I D + ++ L+EA R RY F K ++ + IAHH +D
Sbjct: 82 DLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQND 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE F+ R+ R +G+ G M C +K I+ + + WVED +
Sbjct: 142 QAETFLYRVVRGTGIYGAGAMREKDGNLIR-PLLC---VKKEEIVKYLKEAGQVWVEDAS 197
Query: 264 NRSPLFVRNRIR 275
N+ F RN+IR
Sbjct: 198 NQDDAFARNQIR 209
>gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Kyrpidia tusciae DSM 2912]
gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Kyrpidia tusciae DSM 2912]
Length = 497
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 18/282 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNGEAGEFIDGLLAITVDHGLREES 136
L P HR+ L VSGG DSM L G +G GF+ ++ VDH +R ES
Sbjct: 15 LPPLHRVVLAVSGGVDSMVAMDLI-GQLSGALGFS-----------VVVCHVDHRMRPES 62
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGV 194
+E V G+ + V D + GR ++ Q AAR +RY + +
Sbjct: 63 GDEQRFVEAEAVRRGLAFQGVAVD-VPGRIRKTGESPQAAARALRYEALTQCAREAGAEA 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+++AHH DDQAE +LRL R + GL GM + + + ++
Sbjct: 122 VILAHHQDDQAETVLLRLLRGTSPAGLGGMNEVRRWGDLWWLRPFLKVPKAELVAYATDH 181
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINE 314
+ EDP+N S ++RN+IR+ L L ++ +++ ++ + E V + + E
Sbjct: 182 GIPYREDPSNWSTKYLRNKIRLQLIPLLEREYQPQIKNHLARLAQMIQEDEAVLTPMALE 241
Query: 315 AVT-VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR 355
A + G ++I S + + L L+L + +R
Sbjct: 242 ARDRCVRGGSGNYRIDIPRFSDLPAALQRRVLTLILDYPSER 283
>gi|421166130|ref|ZP_15624398.1| hypothetical protein PABE177_1219 [Pseudomonas aeruginosa ATCC
700888]
gi|404539107|gb|EKA48612.1| hypothetical protein PABE177_1219 [Pseudomonas aeruginosa ATCC
700888]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
Length = 460
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 17/252 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L + + ++ VDH LR++S EE +S
Sbjct: 23 VVVAVSTGVDSMTLLYMLQHLPRAVRPK----------IIVAYVDHQLRDQSVEETRYIS 72
Query: 145 HRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S+ G+ + + W D PK G ++ AAR RYR F++V + LL AHH DD
Sbjct: 73 NYCSEHGLLLK--QAVWPKDDHPKVG-IEAAARTFRYRFFERVLKETGSTCLLTAHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E I++L R + L G+ + + + Q W ED T
Sbjct: 130 LVETVIMKLVRGGQLASLTGIRETRSFADANMIRPLLSFSKQQLESFAQTTGIRWFEDET 189
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEHVCSNLINEAVTVMD 320
N+ RNRIR + L L V+S + + +E + LI+ AV +
Sbjct: 190 NQQLAVERNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIEFLIQPLIHSAVGFPE 249
Query: 321 QGYAVIDLEILN 332
+ A IDL+ L
Sbjct: 250 KQRAEIDLDSLK 261
>gi|418614858|ref|ZP_13177818.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU118]
gi|374818946|gb|EHR83081.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU118]
Length = 431
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVAAGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|420138163|ref|ZP_14646104.1| hypothetical protein PACIG1_1602 [Pseudomonas aeruginosa CIG1]
gi|421158569|ref|ZP_15617817.1| hypothetical protein PABE173_1428 [Pseudomonas aeruginosa ATCC
25324]
gi|403249146|gb|EJY62661.1| hypothetical protein PACIG1_1602 [Pseudomonas aeruginosa CIG1]
gi|404549510|gb|EKA58368.1| hypothetical protein PABE173_1428 [Pseudomonas aeruginosa ATCC
25324]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
Length = 342
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A ++G AG L TVDH LR +S EEA V
Sbjct: 29 LAVSGGPDSTALMHAAA--------RSGRAG-----LRVATVDHALRPDSAEEAAEVGRL 75
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ +G+ + D P++G +Q AR RY+L + G++L AH DDQA
Sbjct: 76 AARLGLPHATLTWDV----PRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQA 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E ++RL SG GLAGM + DL ++ C+ ++ DP+N
Sbjct: 132 ETVLMRLIAGSGPSGLAGMPVERPLAPGIRLVRPFLDLPKADLVAYCEAHRLPFLRDPSN 191
>gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63]
gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Clostridium difficile NAP08]
gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Clostridium difficile NAP08]
gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
Length = 462
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 122/252 (48%), Gaps = 19/252 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE ++R+ R +G+ GL G+ + I + D++ I C+ N + D
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDY---IRDNCIIRPILDVERSEIEEYCEAYNLNPRID 187
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSYVEHVCSNLINEAVT 317
TN ++ RN+IR+ L +F S +++++ ++ + Y+E E
Sbjct: 188 KTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVSN 247
Query: 318 VMDQGYAVIDLE 329
+ ++G+ I+L+
Sbjct: 248 IKEKGFVEINLD 259
>gi|375111102|ref|ZP_09757313.1| tRNA(Ile)-lysidine synthase [Alishewanella jeotgali KCTC 22429]
gi|374568644|gb|EHR39816.1| tRNA(Ile)-lysidine synthase [Alishewanella jeotgali KCTC 22429]
Length = 434
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 13/228 (5%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ + HG+ + A + +G+ ++ R L GR L++ ARD RY++
Sbjct: 51 LTAVHIHHGISRHADAWAEFCQQQCQKLGVDFKLHRVQ-LQGR---SALEQQARDARYQV 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ + L+ AHHA+DQ E +L L R +G+ G+AGMA S + +
Sbjct: 107 LTDY-VTARDSALVTAHHANDQLETLLLALKRGAGLAGMAGMAESRPFGNGLLLRPWLNF 165
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ + + WVED +N+S F RN +R+ + A+ + C RT
Sbjct: 166 SRQQLEHVARALQLSWVEDESNQSAEFDRNFLRLEVIP----KLSERWPAITTTCARTSQ 221
Query: 303 YVEHV--CSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKFLA 346
+++ ++ E +DL+ L P+ +D+ L K+LA
Sbjct: 222 HLQQALELADYYTERALADCATADYLDLQQLALQPALQQDLLLRKWLA 269
>gi|347528740|ref|YP_004835487.1| tRNA(Ile)-lysidine synthase [Sphingobium sp. SYK-6]
gi|345137421|dbj|BAK67030.1| tRNA(Ile)-lysidine synthase [Sphingobium sp. SYK-6]
Length = 315
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 25/264 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L RI + VSGG DSMAL L G A TVDHGLR ++
Sbjct: 21 LATEERIGIAVSGGADSMALLALAYHAWPGRVE-------------AATVDHGLRAAARG 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V+ GI I+ P +G+LQ AAR RY L ++ + L+ A
Sbjct: 68 EAAMVARWCEGQGIPHVILGPP----PPLEGNLQAAARAARYALLEEWRGARGLAWLMTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
H ADDQ E +LRL R +GV GLA + A + + L++ C+
Sbjct: 124 HQADDQIETILLRLGRGAGVGGLASVRARRGTLLRPLLGTRRAALRD-----FCERAGIP 178
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+++DP+N P F R R+R +L + S+ L + A + S + + L E++
Sbjct: 179 FIDDPSNEDPRFDRVRMRTAL-EGSTLIDPGGLARSVDALAQADSALGWMTDTLAAESI- 236
Query: 318 VMDQGYAVIDLEILNPSKIEDIFL 341
+ G A + L P + + L
Sbjct: 237 AFEAGSATLRRTDLPPEILRRLLL 260
>gi|418328264|ref|ZP_12939381.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
14.1.R1.SE]
gi|365232160|gb|EHM73171.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
14.1.R1.SE]
Length = 431
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVAAGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
Length = 476
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 19/202 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P + LGVSGG DS LC+L GFN L+ +H LR E++
Sbjct: 17 ISPESPLVLGVSGGADS--LCLLDVL-HRAGFN-----------LIVAHFNHRLRPEAES 62
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA+ V + G+R E+ + + L +QG ++EAAR+ RY V Q Q + +
Sbjct: 63 EADWVCAQAQQRGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAV 122
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQI--FSSYAYSCHDDLK--NHSILLICQG 253
AH A DQ E ++ L R +G GL GM + + FS+ L +L C
Sbjct: 123 AHTASDQVETVLMHLIRGTGHKGLTGMPYRGFLNQFSTTTPLVRPMLSIWREEVLAYCHE 182
Query: 254 GNRDWVEDPTNRSPLFVRNRIR 275
W+EDP+NR F RNR+R
Sbjct: 183 RGLTWLEDPSNRDVRFTRNRLR 204
>gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421173124|ref|ZP_15630878.1| hypothetical protein PACI27_1364 [Pseudomonas aeruginosa CI27]
gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|404536425|gb|EKA46065.1| hypothetical protein PACI27_1364 [Pseudomonas aeruginosa CI27]
Length = 442
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
Length = 436
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-Q 229
+Q AAR +RY FQ++ + Q +L AHH DD E F++ LSR +G+ GL G+ +
Sbjct: 95 IQMAARALRYEWFQEIADKFQYDYILTAHHQDDMLETFLINLSRGTGIDGLTGIPQQNGN 154
Query: 230 IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS---CSF 286
I D IL + N W ED +N S +VRN+IR + L +F
Sbjct: 155 IVRPLLPFTQVD-----ILAYAKNNNLLWREDSSNASTKYVRNKIRHDIVPLLKELHPTF 209
Query: 287 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 345
QA + + S ++ L E +T + G I++E + K +L + L
Sbjct: 210 MKNFQATQQHLQESNSIIKDAIQKLQAEIITEVSDGNYSIEIEAIQQQKFPKAYLFELL 268
>gi|116199727|ref|XP_001225675.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
gi|88179298|gb|EAQ86766.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
Length = 312
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 29/207 (14%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA----ITV 128
R A + IAL +SGG DSMAL L + + Q + + +D ++ + V
Sbjct: 31 RFPQARSRAQRPIALAISGGVDSMALAYLCSKIR-----QTDQWFKVVDHSISSPCGVIV 85
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG------HLQEAARDMRYRL 182
+H LRE S EA+ V+ +G++ +VR W + P+ +++ AR +RYR
Sbjct: 86 NHDLREGSAIEADNVAVATRKLGVKSHVVRIRWDEVLPEGTKPNDVPNIETLARYLRYRR 145
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
C Q+ L AHH DDQ E ++RL G GL GM + I Y DL
Sbjct: 146 LGTFCKVGQMATLFTAHHEDDQYETVMMRLLSGHGYRGLQGMRPAVDIPECY------DL 199
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLF 269
+ Q G +V+D +R P +
Sbjct: 200 HG-----VYQSG---FVDDQRSRDPFY 218
>gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 442
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
Length = 416
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PK---QGHLQEAARDMR 179
AI ++H L+ + + ++G+ +I R + R P+ G ++EAAR+ R
Sbjct: 22 AIHINHQLQPNADDAERFCEDICRELGVPLDIRRVI-VSSRETPEIDTSGGVEEAARNAR 80
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y++F+++ ++ LL+AHH DDQAE + RL R +GV+GL GM + + + Y
Sbjct: 81 YQVFEEILAPGEL--LLMAHHGDDQAETVLFRLLRGTGVVGLGGMPITRPLGAGRLYRPL 138
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
D + +W+EDP+N F RN +R S+ L KS ++IS
Sbjct: 139 LDFSRAELHAWAAEHGIEWMEDPSNIDERFDRNFLRASIFPL----LKSRWPSLIS 190
>gi|416128136|ref|ZP_11597201.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909]
gi|319399666|gb|EFV87920.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909]
Length = 431
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIISQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594]
gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594]
Length = 319
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 33/301 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGGPDS+AL +L G ++A T+DHGLR E+ +EA +V
Sbjct: 15 RLGVAVSGGPDSLALLLLANTALPGR-------------VVAATIDHGLRPEAADEAAMV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+G+ V + G+ Q+ AR RY + + AHHADD
Sbjct: 62 GGLCERLGVLHHTVEVAL-----EPGNTQDRARKARYEALCRCFGEQGADTFATAHHADD 116
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH------DDLKNHSILLICQGGNRD 257
QAE ++R +R SG+ GLAG+ + + S + + + + I
Sbjct: 117 QAETLLMRFNRGSGLSGLAGIRARTVLLSPEPLGEYLVVRPLLEWRREELAGIVADAGLA 176
Query: 258 WVEDPTNRSPLFVRNRIRMSLGD------LSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
V+DP+N + R ++R +L D L+ LQ A RR+ + V + C+
Sbjct: 177 PVQDPSNVDTRYDRVQVRRALADLPWLDPLAMARSARHLQEAEDAVRRSSADVYNRCTYR 236
Query: 312 INEAVTVMDQGYAVIDLEILNPSKIE---DIFLSKFLALVLQFICQRQRPVRGSTSKLLL 368
E V +++E + +E D+ S L+ Q + + + G ++
Sbjct: 237 EGETVWFHWGHARTVEIEAVRLILLEFGADVPRSSIARLIDQLMSEGAGSLGGVVARRAW 296
Query: 369 H 369
H
Sbjct: 297 H 297
>gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium fabrum str. C58]
gi|61216678|sp|Q8U9L7.1|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium fabrum str. C58]
Length = 443
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL--AITVDHGLREESK 137
KP H I + +SGG DS L + Q +A + DGL A+TVDH LR ES
Sbjct: 28 KPTH-ILVAISGGSDSTGLLLAL---------QEAKAAD-DDGLRLSAVTVDHALRPESA 76
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+EA V+ +++GI R W +P G L EA+R RYRL V + +++
Sbjct: 77 DEARKVAMLCAELGIPHTTRR--WDGPKPASG-LSEASRLARYRLIADVAREIGADLVVS 133
Query: 198 AHHADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQG 253
H DQ E +R +R+ G LGL+GMA + ++ ++ + L + I
Sbjct: 134 GHTIGDQRETVAMRAARSGGSDNLGLSGMA-DAVLYDAHLWIMRPFLACERQVIRDYVSS 192
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSL 278
+R W++DP+N + + R R+R +L
Sbjct: 193 RSRHWLDDPSNENIRYERVRVRQTL 217
>gi|420178957|ref|ZP_14685281.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM057]
gi|420181576|ref|ZP_14687773.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM053]
gi|394245645|gb|EJD90925.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM057]
gi|394245828|gb|EJD91100.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM053]
Length = 431
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIISQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus DSM 785]
gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus DSM 785]
Length = 486
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 92/216 (42%), Gaps = 39/216 (18%)
Query: 85 IALGVSGGPDSMALC-VLTA-----GWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+ + VSGGPDS+AL LTA GW+ L +DHGLR E+S
Sbjct: 23 LVVAVSGGPDSLALLHRLTALATPYGWR----------------LHVAHLDHGLRGEQSA 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVL 195
EA V+ +D G+ I D +D KQ H L AAR RYR +V +Q Q +
Sbjct: 67 AEAAFVAEIAADWGLTATIELRD-VDQVAKQYHVGLPAAARATRYRFLAEVALQQQADAV 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-------------AFSSQIFSSYAYSCHDDL 242
++ H +DDQAE +L + R +G GL+ M Q ++
Sbjct: 126 VLGHQSDDQAETVLLHVLRGTGPSGLSAMRPRTEWVGWRVTAGMPHQAVGPALIRPMLNI 185
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
I C + DPTN S + R RIR L
Sbjct: 186 TRDEIEAYCDEQQLEPRRDPTNNSLEYTRGRIRHQL 221
>gi|418413363|ref|ZP_12986604.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BVS058A4]
gi|420186396|ref|ZP_14692465.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM040]
gi|394252187|gb|EJD97226.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM040]
gi|410879125|gb|EKS26977.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BVS058A4]
Length = 432
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|334882362|emb|CCB83361.1| tRNA(Ile)-lysidine synthase [Lactobacillus pentosus MP-10]
Length = 448
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 15/210 (7%)
Query: 68 EAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A AG L P + + VS G DSM L L Q L+
Sbjct: 5 QKFNRRLAAAGVLSPQVTVVVAVSTGVDSMVLLRLLQQLPVTERPQ----------LVVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + + R ++ DW P+ G ++ A R RYR F K
Sbjct: 55 HVNHHLRAQSQTEAAYLQRYCQEH--RLDLKLADWQATDHPEHG-VEAAGRQFRYRFFTK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A S D
Sbjct: 112 VMQATGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIADSRPFAGGQLVRPLLDWSKA 171
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + + ED TN+ RNRIR
Sbjct: 172 ELRDYAAQHDVTYFEDATNQDVQLTRNRIR 201
>gi|390457096|ref|ZP_10242624.1| tRNA(Ile)-lysidine synthase [Paenibacillus peoriae KCTC 3763]
Length = 482
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G QEAAR++RY + + +A
Sbjct: 76 AEEVRSIARKLAIPFEMIRVDVPVYMKESGKGPQEAARELRYSFLHDTAAKWGAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE +L L R SG GLAGM + + + + ++ C+ + +
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLARREKNVQLIRPLLRMYKADLIEFCRFYSLSY 195
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V D TN + + RN IRM +
Sbjct: 196 VTDSTNLTSKYRRNAIRMDV 215
>gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
ATCC 39073]
gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
ATCC 39073]
Length = 455
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
L P ++ +GVSGGPDS+AL L + G+ L ++HGLR E+
Sbjct: 15 LVPGDKVVVGVSGGPDSLALLHSLMTLQEEYGYT-----------LQVAHLNHGLRPEAA 63
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
+A V + G+ + + D L R ++ HL + AAR++RY FQ+V +
Sbjct: 64 ADAEYVRDLATGWGLPVTVAQRDVLAYR-QEHHLSIEAAAREVRYNFFQEVAAAVGATRI 122
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+ H A+DQAE +L L R SG+ GL M ++ + +++ + C+
Sbjct: 123 AVGHQAEDQAETVLLNLLRGSGLTGLKAMLPRRGRLIRPLLFVTRAEIEAY-----CRDN 177
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 300
D TN P + RN+IR L L + + A+++ RT
Sbjct: 178 GLHPRRDFTNEDPAYRRNKIRHQLLPLLAREYNP---AIVATLGRT 220
>gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae]
gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae]
Length = 286
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 34/208 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I LGVSGGPDSM L L + ++ ++ TV++ +R +S +A IV
Sbjct: 2 ILLGVSGGPDSMYLLDLISSQRSD--------------IVVATVNYNVRHDSAYDAEIVR 47
Query: 145 HRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
D I I C +D + + +G+ ++ AR+ R+ F+K+ ++ L +AHH DD
Sbjct: 48 KFCEDKDI---IFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDD 104
Query: 204 QAELFILRL--SRNSGVLGLAGMAFSSQIFSSYAYSCH------DDLKNHSILLICQGGN 255
E + ++ R G+ +Y Y D + + IL
Sbjct: 105 FLESYFMQKESKRQPDFFGIKT--------ENYIYGMKVVRPLVDKVFKNEILEALHNKK 156
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
+ D TN P++ RNRIR+ L LS+
Sbjct: 157 IKYANDYTNDLPIYTRNRIRIWLKSLSN 184
>gi|84495023|ref|ZP_00994142.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
gi|84384516|gb|EAQ00396.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
Length = 320
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 111/264 (42%), Gaps = 39/264 (14%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALC------VLTAGWKTGGFNQNGEAGEFIDGL 123
++ R ++A + P + + SGG DSMAL A W G
Sbjct: 13 YAVRSSLADIAPDAVVLVACSGGGDSMALAEAVAHEARRASWSAG--------------- 57
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
A+ VDHGL+ S + A + R+ D+G+ +V + L+ AARD RY
Sbjct: 58 -AVVVDHGLQAGSADVAARAAGRLRDLGLGPVVVER--VAVVDNGSGLESAARDARYAAL 114
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSC 238
V + V+++ H +DQAE +L L R SG LAGMA + + C
Sbjct: 115 SGVADRLGAAVVVVGHTLEDQAEQVLLGLVRGSGARSLAGMASVRGIYRRPLLGVTRAEC 174
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACR 298
+ LK + +W +DP N F R R R ++ DL + + A+ +
Sbjct: 175 RESLKAEGV---------EWWDDPMNDDAAFTRVRARRAVADLEADLGPGIVAALGRSAD 225
Query: 299 RTRSYVEHVCSNLINEAVTVMDQG 322
+ R + + S L ++AV + G
Sbjct: 226 QLREDADFLDS-LADDAVAALGPG 248
>gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
Length = 444
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 114/257 (44%), Gaps = 23/257 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+ L + G ++ + L+A+TVDHGLR S +EA V
Sbjct: 33 LGVAVSGGSDSLGLLL--------GMARSVPPKQ----LVALTVDHGLRSGSADEARTVK 80
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+R E + W +P G LQ AR+ RY L + + +L H +DDQ
Sbjct: 81 RICRRLGVRHETLL--WKGEKPVSG-LQAKAREARYHLLSDAASRLGLAAILTGHTSDDQ 137
Query: 205 AELFILRLSRN--SGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLICQGGNRDWVE 260
AE +R +R GL G+ +S +F ++ + SI W+E
Sbjct: 138 AETLTMRRTRGLRDDAPGLIGIPQAS-LFDGRSWVLRPLLGVDRASIRRYLAMAGVGWIE 196
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
DP+N F R R+R L + + KS +A + R R +E + +++A V
Sbjct: 197 DPSNLDVRFERVRVRKGL-EAQAMVSKSSDEASRAIASRVRIALE--AAAFVDQACGVQR 253
Query: 321 QGYAVIDLEILNPSKIE 337
G + L+ ++E
Sbjct: 254 DGTWRVALDGRGAGEVE 270
>gi|418324989|ref|ZP_12936200.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU071]
gi|365229051|gb|EHM70219.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU071]
Length = 432
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCQQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|399024106|ref|ZP_10726153.1| tRNA(Ile)-lysidine synthetase [Chryseobacterium sp. CF314]
gi|398081330|gb|EJL72110.1| tRNA(Ile)-lysidine synthetase [Chryseobacterium sp. CF314]
Length = 441
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 32/264 (12%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GL 132
+ G +H L VSGG DSM L L F D L + H L
Sbjct: 13 LVGTPENHTYLLAVSGGVDSMVLASL-----------------FNDSKLHFHIAHINYKL 55
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
R E+S + IV I + D +P + +Q AR++RY F+++ + +
Sbjct: 56 RGEDSDSDQKIVQDFCEKKHIPFHLYVVSGRDQKP-ENSIQLWARELRYNFFKQIREKEK 114
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLI 250
+ L+ AHH +DQ E FI+ LS+ SG+ GL+G+ A + I ++ I
Sbjct: 115 LEFLVTAHHLNDQLETFIINLSKASGINGLSGIPANDNHILRPLLPFSKEE-----IYTF 169
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHV 307
+ N ++ ED +N+ ++RN+IR + ++ F + S +T+ +V+
Sbjct: 170 AKENNIEFREDLSNKKNDYLRNKIRNEIVPKLLETNDHFLENFKKSSSYLNQTKDFVQKQ 229
Query: 308 CSNLINEAVTVMDQGYAVIDLEIL 331
I ++V + G+ +I E L
Sbjct: 230 IKE-IESRISVFNNGHTIISKEKL 252
>gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
Length = 434
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 19/259 (7%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A L PH R+ +G SGG DS L L A F Q ++ LA+ V HGL +
Sbjct: 13 AHLNPHSRLVIGFSGGVDSQVLLTLAAR-----FGQ-----QYQCECLAVHVHHGLSGNA 62
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
A + + G+ + + + +P+ ++ AR+ RY+ + ++H VLL
Sbjct: 63 DRWAEQCAQWAHERGVPFVVEK---VILQPQGKSIEACAREARYQALAQ-HLEHG-DVLL 117
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
HADDQ E F+L + R SG GL+ MA + Y ++ +I
Sbjct: 118 TGQHADDQLETFLLAVKRGSGPKGLSAMAQCRSFANGYMLRPLLEVNRSTIEAFAVEHQL 177
Query: 257 DWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W ED +N+ F RN IR + + FK+ +Q C + ++ + S ++
Sbjct: 178 QWAEDESNQDTRFDRNYIRHQVAPALNQRWPHFKAAVQRSAQLCFEQEALLDELLSEKLS 237
Query: 314 EAVTVMDQGYAVIDLEILN 332
E +T D G ++ L L+
Sbjct: 238 E-LTAADDGLSIAGLTSLS 255
>gi|251809816|ref|ZP_04824289.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
BCM-HMP0060]
gi|417657908|ref|ZP_12307560.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028]
gi|417910387|ref|ZP_12554107.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU105]
gi|417912767|ref|ZP_12556450.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU109]
gi|418620900|ref|ZP_13183693.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU123]
gi|418664899|ref|ZP_13226363.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU081]
gi|420170833|ref|ZP_14677390.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM070]
gi|420173832|ref|ZP_14680320.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM067]
gi|420182197|ref|ZP_14688337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM049]
gi|420186702|ref|ZP_14692744.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM039]
gi|420208034|ref|ZP_14713515.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM008]
gi|420210550|ref|ZP_14715974.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM003]
gi|420212960|ref|ZP_14718302.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM001]
gi|421608977|ref|ZP_16050186.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis AU12-03]
gi|251806684|gb|EES59341.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
BCM-HMP0060]
gi|329733025|gb|EGG69364.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028]
gi|341656161|gb|EGS79883.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU105]
gi|341657132|gb|EGS80828.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU109]
gi|374409994|gb|EHQ80761.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU081]
gi|374830944|gb|EHR94697.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU123]
gi|394239352|gb|EJD84796.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM067]
gi|394239598|gb|EJD85036.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM070]
gi|394250439|gb|EJD95627.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM049]
gi|394258872|gb|EJE03745.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM039]
gi|394274777|gb|EJE19185.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM008]
gi|394276077|gb|EJE20430.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM003]
gi|394277462|gb|EJE21785.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM001]
gi|406655374|gb|EKC81804.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis AU12-03]
Length = 432
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|345888508|ref|ZP_08839590.1| hypothetical protein HMPREF0178_02364 [Bilophila sp. 4_1_30]
gi|345040635|gb|EGW44873.1| hypothetical protein HMPREF0178_02364 [Bilophila sp. 4_1_30]
Length = 384
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G+ PHH + + SGG DS AL V+ + G + L+ +DH LR ES
Sbjct: 74 GVSPHH-VIVAFSGGADSTALAVIL---RCLGVS-----------LVLAHLDHRLRPESG 118
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +G+ C + R D R + L++A R RY F + ++
Sbjct: 119 EEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALRSGRAEWVV 178
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAF---SSQIFSSYAYSCHDDLKNHSILLICQG 253
HH DD +E ++RL R SG GL GM + + + +L+ +
Sbjct: 179 TGHHLDDLSEDVLMRLVRGSGWPGLGGMKAVDPARHLLRPLLGTSRAELEA-----FLRS 233
Query: 254 GNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 310
DW+ED +NRS F RNR+R + L + SF + + R Y + V +
Sbjct: 234 LGVDWIEDASNRSDAFRRNRMRNHVIPLLKAENPSFSRSTRTLWELAREDEHYWDEVLAP 293
Query: 311 LINE 314
+ +
Sbjct: 294 VFAQ 297
>gi|419761104|ref|ZP_14287364.1| tRNA(Ile)-lysidine synthase [Thermosipho africanus H17ap60334]
gi|407513785|gb|EKF48666.1| tRNA(Ile)-lysidine synthase [Thermosipho africanus H17ap60334]
Length = 426
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + RI + VSGG DS L L A + E +F + TVDHG+R+ESKE
Sbjct: 17 IEENDRIIVAVSGGVDSSVLLNLLA--------RVQEYFKF--SIFCATVDHGIRKESKE 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
E V + + + C I D L + + ++EAAR +RY+ ++ + +
Sbjct: 67 EVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM 224
AH+ +D AE + RL+R +G G+ GM
Sbjct: 127 AHNLNDLAETVLFRLARGTGPFGIYGM 153
>gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
Length = 398
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 95/198 (47%), Gaps = 30/198 (15%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDS+AL + A + + G A+ VDHGL+ +S E A + +++
Sbjct: 62 SGGPDSLALACIAAHFARRSDVRVG----------AVVVDHGLQADSAEVAASTAETLTN 111
Query: 150 MG---IRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGV--LLIAHHAD 202
+G +R E V+ QG + + AAR RY F+ C H G +L+ H D
Sbjct: 112 LGLYPVRTECVQV-------PQGSMGPEMAARTARYSAFE--CAVHNTGARAVLLGHTLD 162
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY-SCHDDLKNHSILLICQG-GNRDWVE 260
DQAE +L L R SG LAGM ++I + Y L+ +L IC+ G W
Sbjct: 163 DQAETVLLGLGRGSGTRSLAGMP-PARIENGVTYLRPFLALRRADMLNICEAEGATPW-N 220
Query: 261 DPTNRSPLFVRNRIRMSL 278
DPTN +R RIR ++
Sbjct: 221 DPTNTDQTLMRARIRHTI 238
>gi|164428026|ref|XP_956207.2| hypothetical protein NCU01570 [Neurospora crassa OR74A]
gi|16416041|emb|CAD01129.1| conserved hypothetical protein [Neurospora crassa]
gi|157071979|gb|EAA26971.2| predicted protein [Neurospora crassa OR74A]
Length = 797
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 78 GLKPHHR-IALGVSGGPDSMALCVLTAGWK-------TGGFNQNGEAGEFIDG-LLAITV 128
P HR I +SGG DSMAL L K + N+ G+ I G + A+ V
Sbjct: 30 AFSPRHRHIGCAISGGVDSMALAFLFHRLKQEKSLNASVSPNEQFRVGDNILGKVRAVIV 89
Query: 129 DHGLREESKEEANIVSH----RVSDMGIRCEIVRCDWLD----GRPKQGH--LQEAARDM 178
DHGLRE S EEA V+H ++ DM + I +W G + H ++ AR +
Sbjct: 90 DHGLREGSDEEAQKVAHAIKTKIGDM-VDPTIETINWESELGPGVDPKTHPSIEPLARKL 148
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY VC +H I L HH DDQ E ++R+ G GL G+ + I Y
Sbjct: 149 RYAAIAGVCQRHNICSLFTGHHEDDQYETILMRMISGRGYRGLQGIPNAVDIPECY---- 204
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVR 271
D+ N + Q G +++D + SP + R
Sbjct: 205 --DIHN-----VYQSG---YLDDQESTSPFWTR 227
>gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
Length = 434
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P RI L SGG DS L L A ++ E LA+ V HGL + E
Sbjct: 15 LAPRSRIVLAFSGGIDSRVLLSLLARYQQ----------ETHRPTLAVHVHHGLSVNADE 64
Query: 139 EANIVSHRV--SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH--QIGV 194
AN SD+ E V+ D G+ ++E ARD RY KV QH + +
Sbjct: 65 WANQCQEWAAQSDVPFILEKVQLD-ASGKS----IEECARDQRY----KVLAQHVNEKDI 115
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
LL H DDQ E F+L L R SG GL+ MA S + ++ I Q
Sbjct: 116 LLTGQHGDDQLETFLLALKRGSGPKGLSAMAESKPFSNGRLVRPLLKVRREEIEQYAQHH 175
Query: 255 NRDWVEDPTNRSPLFVRNRIR 275
+WVED +N+ F RN IR
Sbjct: 176 GLNWVEDESNQDTRFDRNYIR 196
>gi|27469192|ref|NP_765829.1| hypothetical protein SE2274 [Staphylococcus epidermidis ATCC 12228]
gi|57866063|ref|YP_187744.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
gi|242241594|ref|ZP_04796039.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
epidermidis W23144]
gi|293366151|ref|ZP_06612838.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417909720|ref|ZP_12553454.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU037]
gi|418610307|ref|ZP_13173423.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU065]
gi|418611290|ref|ZP_13174381.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU117]
gi|418616842|ref|ZP_13179765.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU120]
gi|418623718|ref|ZP_13186419.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU125]
gi|418626911|ref|ZP_13189505.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU126]
gi|418628393|ref|ZP_13190940.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU127]
gi|418631646|ref|ZP_13194101.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU128]
gi|420166940|ref|ZP_14673617.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM088]
gi|420174331|ref|ZP_14680783.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM061]
gi|420193849|ref|ZP_14699695.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM023]
gi|420196108|ref|ZP_14701887.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM021]
gi|420201331|ref|ZP_14706954.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM018]
gi|420215499|ref|ZP_14720765.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05005]
gi|420218223|ref|ZP_14723320.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05001]
gi|420221258|ref|ZP_14726209.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH04008]
gi|420223789|ref|ZP_14728678.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH08001]
gi|420226244|ref|ZP_14731065.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH06004]
gi|420228665|ref|ZP_14733411.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05003]
gi|420231044|ref|ZP_14735720.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH04003]
gi|420233650|ref|ZP_14738257.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
NIH051668]
gi|420236080|ref|ZP_14740610.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
NIH051475]
gi|61217168|sp|Q5HRP5.1|TILS_STAEQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|61217351|sp|Q8CQV3.1|TILS_STAES RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|27316741|gb|AAO05916.1|AE016751_211 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57636721|gb|AAW53509.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
gi|242234975|gb|EES37286.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
epidermidis W23144]
gi|291319745|gb|EFE60104.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|341652654|gb|EGS76438.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU037]
gi|374404846|gb|EHQ75810.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU065]
gi|374820430|gb|EHR84518.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU120]
gi|374823728|gb|EHR87721.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU117]
gi|374829752|gb|EHR93548.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU125]
gi|374831151|gb|EHR94898.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU126]
gi|374834516|gb|EHR98156.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU128]
gi|374837858|gb|EHS01420.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU127]
gi|394231853|gb|EJD77475.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM088]
gi|394245127|gb|EJD90448.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM061]
gi|394259373|gb|EJE04219.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM023]
gi|394262263|gb|EJE07039.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM021]
gi|394273029|gb|EJE17470.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM018]
gi|394282185|gb|EJE26394.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05005]
gi|394284600|gb|EJE28705.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05001]
gi|394284969|gb|EJE29062.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH04008]
gi|394286753|gb|EJE30738.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH08001]
gi|394292468|gb|EJE36211.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH06004]
gi|394294434|gb|EJE38115.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH05003]
gi|394295724|gb|EJE39363.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIH04003]
gi|394299780|gb|EJE43311.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
NIH051668]
gi|394301435|gb|EJE44892.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis
NIH051475]
Length = 432
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 FETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
Length = 471
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 100/222 (45%), Gaps = 19/222 (8%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P ++ +GVSGGPDS+AL L ++ E ++ L HGLR E+ E
Sbjct: 17 LFPGDKVVVGVSGGPDSVALLDLLYR-----LREDKELSLYVAHL-----HHGLRAEADE 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
EA +VS G+ + R D + +Q L + AAR++RYR +V + +
Sbjct: 67 EAAMVSELARRYGLPFFLDRVD-VKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIA 125
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ H ADDQAE +L L R +G+ GL G+ F + I CQ
Sbjct: 126 LGHQADDQAETVLLHLLRGTGLSGLRGIPPVRGPFIRPLLRV----RRAEIEAYCQWRGL 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACR 298
D +N S + RNRIR L L + F + V+ CR
Sbjct: 182 SPCLDLSNWSLEYTRNRIRHQLLPLLAREFNPSIVEVL--CR 221
>gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
RB2256]
gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 284
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+ A TVDHGLR+ S +EA +V+ + I +R P +G LQ AAR RYRL
Sbjct: 15 VWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRP----PTPIRGSLQAAARTERYRL 70
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
++ H + ++ AHHADDQ E ++RL+R SGV GLA + ++
Sbjct: 71 LEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVLRPLLGW---- 126
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ ++ + + +++DP+N F R R+R +L
Sbjct: 127 RRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHAL 162
>gi|420169415|ref|ZP_14676015.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM087]
gi|394231305|gb|EJD76938.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis NIHLM087]
Length = 432
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 LETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
africanus TCF52B]
gi|226695550|sp|B7IFR8.1|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
africanus TCF52B]
Length = 427
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + RI + VSGG DS L L A + E +F + TVDHG+R+ESKE
Sbjct: 18 IEENDRILVAVSGGVDSSVLLNLLA--------RVQEYFKF--SIFCATVDHGIRKESKE 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
E V + + + C I D L + + ++EAAR +RY+ ++ + +
Sbjct: 68 EVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVAT 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM 224
AH+ +D AE + RL+R +G G+ GM
Sbjct: 128 AHNLNDLAETVLFRLARGTGPFGIYGM 154
>gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
adiacens ATCC 49175]
gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
adiacens ATCC 49175]
Length = 457
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H + L VSGG DSM L A F + + D ++ V++GLR +S +E
Sbjct: 18 HQKYVLAVSGGVDSMVLLNAMALL----FEDHAK-----DHIVVAHVNYGLRAQSMDEEQ 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V I EI ++ + + ++ + R+ RY F++V +HQ L++AHH
Sbjct: 69 LVRRFCKSRQIPFEI--KNFKETKEEKAS-ESILRNFRYEFFEEVLKKHQAHYLVVAHHQ 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E +++ SR S + GL+GM Q+ L + + ++ED
Sbjct: 126 DDQLETILMKWSRGSTLEGLSGMKEIRQVKGMTILRPFLSLNKKELYQEAETHQVPYLED 185
Query: 262 PTNRSPLFVRNRIR 275
+N S + RNR R
Sbjct: 186 ESNESDNYTRNRYR 199
>gi|383485756|ref|YP_005394668.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386321560|ref|YP_006017722.1| ATPase of the PP-loop superfamily implicated in cell cycle control
[Riemerella anatipestifer RA-GD]
gi|416109813|ref|ZP_11591693.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
gi|442314351|ref|YP_007355654.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-2]
gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Riemerella anatipestifer RA-GD]
gi|380460441|gb|AFD56125.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|441483274|gb|AGC39960.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-2]
Length = 427
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSM L L ID + I +++ LR E+S ++A
Sbjct: 21 HQFLLAVSGGADSMVLAHLMKQ---------------IDAKIEIAHINYKLRSEDSDKDA 65
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V I D +P G +Q AR++RY+ F+ + + L+ AHH
Sbjct: 66 ALVQEFCEKHHILFHCYTVSEKDQKP-SGSIQLWARELRYQFFRNIMKNRSLSHLVTAHH 124
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
+DQ E FI+ LSR SG+ GLAG+ + ++I D I + + +
Sbjct: 125 LNDQLETFIINLSRGSGIKGLAGIPNNENEILRPLL-----DFSKEEIYHFAEAHSIAFR 179
Query: 260 EDPTNRSPLFVRNRIRMSL 278
ED +N+ ++RN+IR S+
Sbjct: 180 EDKSNQKQDYLRNKIRHSV 198
>gi|295670353|ref|XP_002795724.1| PP-loop family protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284809|gb|EEH40375.1| PP-loop family protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 626
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIAL VSGG DSMAL L+ + + FI VDH RE S EEA+ V
Sbjct: 45 RIALAVSGGSDSMALAFLSKQLISERLIPDLNVKPFI-------VDHKAREGSTEEAHKV 97
Query: 144 SHRVSDMGIRCEIVRCDWLDGR-PKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + D+G I+ W G P + + +AR RY++ C ++ I L + HH
Sbjct: 98 ASWLKDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQ 157
Query: 202 DDQAELFILRLSRN----SGVLGLAGMA 225
DD E + RL R SG G+A +
Sbjct: 158 DDTVETVLSRLVRGQRQASGFTGVASVG 185
>gi|347819430|ref|ZP_08872864.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 336
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A + + A+ V HGL+
Sbjct: 20 AMRAFAPALPLAVGLSGGADSTALLLACAR-------------RWPGRVRAVHVHHGLQA 66
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQ-- 191
++ D+ + + R LD RP G E AAR RYR F+ + + +
Sbjct: 67 AAEGFERHCIALCQDLDVPLTVQR---LDARPAPGQSPEDAARQARYRAFEALALDRRAQ 123
Query: 192 ---IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + +A HADDQAE +L L R +GV GLA M + + + +
Sbjct: 124 RDAMQSMALAQHADDQAETLLLALLRGAGVAGLAAMPARWERAGVVWHRPLLQVAGADVR 183
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ +DWVEDP+N F RNRIR L
Sbjct: 184 QWLRAQGQDWVEDPSNADERFTRNRIRARL 213
>gi|417658423|ref|ZP_12308054.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045]
gi|329737901|gb|EGG74129.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045]
Length = 432
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 79/194 (40%), Gaps = 10/194 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM+L ++ + L + V+HGLRE+S EE +
Sbjct: 14 IVVAVSTGIDSMSLL----------YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLR 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
I I R D D +Q+ AR RY F + Q + VLL AHH DDQ
Sbjct: 64 EYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E I RL GM + S Y +LK IL + ED +N
Sbjct: 124 FETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMSN 183
Query: 265 RSPLFVRNRIRMSL 278
+ +VRN IR +
Sbjct: 184 QDRKYVRNDIRQRI 197
>gi|358381036|gb|EHK18712.1| hypothetical protein TRIVIDRAFT_193824 [Trichoderma virens Gv29-8]
Length = 647
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 31/252 (12%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R MA RI +GG DSMA+ L + + A + I VDH L
Sbjct: 31 RFPMAYYARPQRIG---NGGVDSMAMAYLFSA-LLKVYRGIKIADNPTESAFGIVVDHKL 86
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
REES +EA+ V+ + +G++ I +W + R P +++ AR MRY+
Sbjct: 87 REESSQEASRVTQELKQLGLKAVIKTLNWREHRWHGIEPTMLPNVESLARTMRYQALGST 146
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCH------ 239
C Q L AHH DDQ E ++RL G GL G+ ++ I Y +S +
Sbjct: 147 CRYLQAPSLFFAHHQDDQYETVLMRLLAGHGYRGLQGIRKANAIPECYELHSVYKSGLLD 206
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 299
D ++ H L + + P R+R SL D ++++ +S
Sbjct: 207 DQMQKHPFL--------------SFKPPARAMKRLRFSLKDDKEAEPWDQIKSYLSFDEN 252
Query: 300 TRSYVEHVCSNL 311
R + H+ +
Sbjct: 253 ARPFPWHLSRDF 264
>gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|386057375|ref|YP_005973897.1| putative cell cycle protein [Pseudomonas aeruginosa M18]
gi|421152553|ref|ZP_15612133.1| hypothetical protein PABE171_1479 [Pseudomonas aeruginosa ATCC
14886]
gi|421179198|ref|ZP_15636794.1| hypothetical protein PAE2_1243 [Pseudomonas aeruginosa E2]
gi|424939548|ref|ZP_18355311.1| putative cell cycle protein [Pseudomonas aeruginosa NCMG1179]
gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
gi|346055994|dbj|GAA15877.1| putative cell cycle protein [Pseudomonas aeruginosa NCMG1179]
gi|347303681|gb|AEO73795.1| putative cell cycle protein [Pseudomonas aeruginosa M18]
gi|404525313|gb|EKA35589.1| hypothetical protein PABE171_1479 [Pseudomonas aeruginosa ATCC
14886]
gi|404547441|gb|EKA56439.1| hypothetical protein PAE2_1243 [Pseudomonas aeruginosa E2]
Length = 442
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGRLCR 160
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ + Q DWVEDP+N+ P F RN +R + + + QAV
Sbjct: 161 PLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWP---QAVAGMA 217
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 337
R C+ + EA ++ + A IDL PS+++
Sbjct: 218 R---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|297620920|ref|YP_003709057.1| tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044]
gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
86-1044]
Length = 438
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 15/254 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + SGGPDSMAL + ++ + G A VDH R+ES +EA +
Sbjct: 22 VLIACSGGPDSMALLRMMVEYRKTHSVRFGVA----------HVDHRWRKESADEAETLR 71
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ + + +D QG+L+EA R R F ++C H G +++ HH DDQ
Sbjct: 72 ALCREIDVPFHLKE---IDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE + R+ + + GM S + + ++ ++ N + DPTN
Sbjct: 129 AETVLKRVFEGAKLEKCGGMQEISVYETIPFWRPFLQVRKQKLIAWLNLRNFPYFIDPTN 188
Query: 265 RSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGY- 323
F+R++IR ++ S F E+ ++ R ++ + I + + + ++
Sbjct: 189 NDSSFLRSKIRGNILPEISRYFGKEVSPGLAFLGREAHALKEFMGSHIYKWLALKEKTPW 248
Query: 324 -AVIDLEILNPSKI 336
V+DL NPS +
Sbjct: 249 GTVLDLSCQNPSHL 262
>gi|355683141|ref|ZP_09062817.1| hypothetical protein HMPREF9469_05854 [Clostridium citroniae
WAL-17108]
gi|354810623|gb|EHE95263.1| hypothetical protein HMPREF9469_05854 [Clostridium citroniae
WAL-17108]
Length = 456
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P R+ VSGG DS+ L L G K E+ L A+ V HGLR +E+
Sbjct: 18 LSPGDRVIAAVSGGADSVCLLALLYGMKE----------EWDLQLRAVHVHHGLRGQEAD 67
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIG--- 193
+A+ V +++ + C I++ D G +EA R +RY ++ + + G
Sbjct: 68 RDADFVRTLCAELDVPCHIIKVDVRRFASGSGMSEEEAGRHLRYEALEQEAQEWESGDKG 127
Query: 194 --VLLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLI 250
+ +AHH+DDQAE + + R SG+ GL G+ +I D I+
Sbjct: 128 RARIAVAHHSDDQAETILHNMFRGSGLAGLKGIPHVRGRIIRPLL-----DADRREIIDW 182
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIR 275
+ WV+D TN S + RNRIR
Sbjct: 183 LRKNGFSWVQDSTNTSDHYTRNRIR 207
>gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 424
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSM L L ID + I +++ LR E+S ++A
Sbjct: 18 HQFLLAVSGGADSMVLAHLMKQ---------------IDAKIEIAHINYKLRSEDSDKDA 62
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V I D +P G +Q AR++RY+ F+ + + L+ AHH
Sbjct: 63 ALVQEFCEKHHILFHCYTVSEKDQKP-SGSIQLWARELRYQFFRNIMKNRSLSHLVTAHH 121
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
+DQ E FI+ LSR SG+ GLAG+ + ++I D I + + +
Sbjct: 122 LNDQLETFIINLSRGSGIKGLAGIPNNENEILRPLL-----DFSKEEIYHFAEAHSIAFR 176
Query: 260 EDPTNRSPLFVRNRIRMSL 278
ED +N+ ++RN+IR S+
Sbjct: 177 EDKSNQKQDYLRNKIRHSV 195
>gi|167957510|ref|ZP_02544584.1| putative cell-cycle protein [candidate division TM7 single-cell
isolate TM7c]
Length = 275
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 26/196 (13%)
Query: 88 GVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+SGG DS+ L +L+ +KT ++ V+HG+R ES E+A+ V
Sbjct: 5 AISGGVDSIVLLDLLSKRYKTSD-------------IIVAHVNHGIRVESSEDADFVRKM 51
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ G+R + D +E ARD RY +K+ + ++ AHHADD E
Sbjct: 52 SAKYGMRYRQI-----DLNLGLHASEEVARDQRYTFLRKLSKEFNAKIV-TAHHADDIIE 105
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
+ L R +G GLA M+ + I+ +DL LL + +W ED TN S
Sbjct: 106 TIAINLVRGTGWRGLAVMS-AKDIYRPLTCFYKNDL-----LLYAKKNGLEWREDSTNSS 159
Query: 267 PLFVRNRIRMSLGDLS 282
L++RNR+R + L+
Sbjct: 160 DLYLRNRLRKRIKTLN 175
>gi|424779787|ref|ZP_18206679.1| tRNA(Ile)-lysidine synthetase [Catellicoccus marimammalium
M35/04/3]
gi|422843537|gb|EKU27967.1| tRNA(Ile)-lysidine synthetase [Catellicoccus marimammalium
M35/04/3]
Length = 432
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+ L +SGG DSMAL L A + I + H LR+E+++EA ++
Sbjct: 2 KFLLAISGGSDSMALWELFAQLAPNSYG-------------IIHIQHHLRKEAEQEAKMI 48
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ R DW P + +++ AR+ RY FQK + + +L AHH DD
Sbjct: 49 EALCQKRDV--PFYRYDWT---PSENNIEAKAREFRYACFQKTMQEEEYDILCTAHHQDD 103
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
Q E + R+ R + + G+ + Y + + + N+ + ED +
Sbjct: 104 QIETIMQRIFRGTHLWHCTGIEELREFGEGYLWRPLLSFSKEELKTWLESQNQQYFEDES 163
Query: 264 NRSPLFVRNRIR 275
N + RNRIR
Sbjct: 164 NTDLHYQRNRIR 175
>gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
3_1_45B]
gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
3_1_45B]
Length = 702
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 111/266 (41%), Gaps = 48/266 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DSMAL + A Q I L A+ V HGL E+
Sbjct: 199 RVIVALSGGRDSMALLDVAARIAADRRQQ------LIAELRAVYVHHGLEREADAWEEHC 252
Query: 144 SHRVSDMGIRCEIVRCDWL---DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
G+ E VR DG ++ AARD+RYR + ++ +++ AHH
Sbjct: 253 RRECEKRGVIFEAVRVRVQRSGDG------IEAAARDVRYRALAQYALKSGCSIIMTAHH 306
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD----DLKNHSILLICQGG-- 254
DD+ E F+L+ R +G+ GLA ++ A S D + LL G
Sbjct: 307 EDDRIETFLLQWMRGAGLEGLAAF---PEVRELAAPSMEDAKAVQARKQVFLLRPWSGVL 363
Query: 255 NRD-----------WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 303
RD +V+DP+N SP + RNR+R SE+ + A R S
Sbjct: 364 RRDIERYVKNRRIPYVDDPSNNSPKYARNRVR------------SEIIPRLEAIRPGFSA 411
Query: 304 VEHVCSNLINEAVTVMDQGYAVIDLE 329
LI EA+ V+ + A DLE
Sbjct: 412 SAARSVGLIGEALEVL-KSVARADLE 436
>gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
Length = 461
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSH 145
+ VSGGPDS+AL + +Q A + L + ++GLR ES +A+ V+
Sbjct: 1 MAVSGGPDSVALLSI--------LHQLAPAWNLL--LTVVHCNYGLRGAESDGDASFVAA 50
Query: 146 RVSDMGIRCEIVRCDWLD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + C I R +D G + LQ AR+ RYRLF+ V ++ + + H ADD
Sbjct: 51 LCRRLELPCHIRRLT-VDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADD 109
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +LR+ R +G+ GLAGM I S IL Q + D +
Sbjct: 110 QAETVLLRMLRGTGLRGLAGM---PHIRESLFVRPLLSRSRQEILAYLQAVGLSYRTDSS 166
Query: 264 NRSPLFVRNRIRMSL 278
N +++RNR+R L
Sbjct: 167 NAKSIYLRNRVRHEL 181
>gi|61216758|sp|Q9ZGE2.1|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis]
Length = 470
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 20/217 (9%)
Query: 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M + FS+ + G+ KP RI + +SGG DS+ L +L F + + +F
Sbjct: 1 MNHLLQRFSQSLCRLGINKPRERIVIALSGGADSVCLLLL--------FKKV--SPQFGI 50
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDM 178
L A +HG+R +ES E+A V+ + + + E W P G EAAR +
Sbjct: 51 ELAAAHYNHGMRGKESDEDAAFVAELTNRLQVPLFLETAPLKWWQQEP--GTKMEAARRL 108
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY + Q + +AHHADD AE + + R SG+ GL+G+ F
Sbjct: 109 RYDFLSRSAEQAGARWIALAHHADDMAETVLFHMLRGSGIKGLSGIPAKRGPFVRPLLP- 167
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + + + W D +N S ++ RNRIR
Sbjct: 168 ---FRRKELEEFLKAEGQHWRHDSSNDSDVYTRNRIR 201
>gi|372324235|ref|ZP_09518824.1| tRNA(Ile)-lysidine synthetase [Oenococcus kitaharae DSM 17330]
gi|366983043|gb|EHN58442.1| tRNA(Ile)-lysidine synthetase [Oenococcus kitaharae DSM 17330]
Length = 300
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DS L L +++ + D L VDH LR +S +E ++
Sbjct: 23 KVLVAISGGVDSTVLANLLFKYES----------QPSDHLFLAHVDHQLRPDSFKEKELI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + G+ ++ W + ++ AARD RY+ +++V + I +++A HA+D
Sbjct: 73 DRQFASRGL--QVFHKIWPRSQHPTSGIENAARDFRYQFYEEVASRLGISTIILAQHAND 130
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD---DLKNHSILLICQGGNRDWVE 260
QAE +L+L R ++ M +S + +S ++K + + +W+E
Sbjct: 131 QAETTLLKLIRGGDWETISAMNWSRPLNNSSDIRVVRPLLNIKKADLYAYAKSTGLEWIE 190
Query: 261 DPTNRSPLFV-RNRIR 275
DP+N+ P + RN+IR
Sbjct: 191 DPSNQDPDYTSRNQIR 206
>gi|422414655|ref|ZP_16491612.1| bifunctional protein TilS/hprT, partial [Listeria innocua FSL
J1-023]
gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023]
Length = 453
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS AL L W + + + ++H LRE +++E V
Sbjct: 23 KLLVAVSGGPDSFAL--LHFLWSAKLVPK--------EAIAVAHLNHHLRENAEKEQLAV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I I D K Q ++E AR +RY F+KV ++ I L++AHHAD
Sbjct: 73 QTFCEERDIPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S +G +G+ ++ YA + I+ + D
Sbjct: 133 DQIETILMRLVRGSSSIGWSGIQPKREVRGGYAIRPFLPITKAEIIEYANTHTLPYEIDE 192
Query: 263 TNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 193 SNTSQEYTRNRYRTQL 208
>gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 334
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGG DS+AL A F EA A+TVDHGL+E S A V+ ++
Sbjct: 33 SGGADSLALAGAVA------F----EAPRVGRTAGAVTVDHGLQEGSDRRAEDVAKVLAG 82
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+G+ +VR + G G + +AR RY + V+L+ H DDQAE +
Sbjct: 83 LGLDPVLVRTVRVTG---PGGPEASARRARYEALDGAVAERAPAVVLLGHTLDDQAETVL 139
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLF 269
L L+R SG LAGMA + DL ++ C D EDP N P F
Sbjct: 140 LGLARGSGARSLAGMAPR----VGHRLRPLLDLDRATVREACARMGLDAWEDPHNLDPRF 195
Query: 270 VRNRIR 275
R+R+R
Sbjct: 196 ARSRVR 201
>gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Marinobacter sp. ELB17]
gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Marinobacter sp. ELB17]
Length = 212
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 13/200 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + SGG DS L L A L A+ ++H L+ + E
Sbjct: 23 LPQHDRLCIAFSGGLDSSLLLHLFAAITPASI-----------ALSALHINHQLQPNAAE 71
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + +V G L++AAR RY +F++ ++ LL+A
Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADEL--LLLA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E + RL R SGV GLAGM F+ + + + + +G W
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALCARALARPLLEFSRAQLEAWAEGAGLPW 189
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
+EDP+N F RN +R S+
Sbjct: 190 MEDPSNSDQRFDRNYLRNSV 209
>gi|340515834|gb|EGR46086.1| predicted protein [Trichoderma reesei QM6a]
Length = 599
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 24/250 (9%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAG----WKTGGFNQNGEAGEFIDGLLAITV 128
R A +P L +SGG DSMA+ L + ++ N F + V
Sbjct: 31 RFPTALRRPRDPQPLAISGGVDSMAMAYLFSRLLRMYRGIKIADNPAETAF-----GVVV 85
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-------HLQEAARDMRYR 181
DH LREES +EA+ V+ + +G++ I +W + + QG +++ AR MRY+
Sbjct: 86 DHKLREESTQEASRVTQELKRLGLKAIIKTLNWRELK-WQGIEPATMPNIESVARTMRYQ 144
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
C Q L AHH DDQ E ++RL G GL G+ ++ I Y H
Sbjct: 145 ALGSTCKYLQSSSLFFAHHQDDQYETVLMRLLAGHGYRGLQGIREANAI--PECYEMHSV 202
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTR 301
K S LL Q R ++ + + P R+R L D ++++ +S+ +
Sbjct: 203 YK--SGLLDDQMQKRPFL---SFKPPSREMKRLRHILRDDKDAEPWDQIRSYLSSSDKPM 257
Query: 302 SYVEHVCSNL 311
S+ H +
Sbjct: 258 SFSSHFSRDF 267
>gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT, partial [Listeria ivanovii FSL
F6-596]
gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
Length = 485
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI--DGLLAITVDHGLREESKEEAN 141
++ + VSGGPDS+AL + + + V+HGLRE + +E
Sbjct: 23 KLLVAVSGGPDSLALLHFL------------RMANLVPKEAISVGHVNHGLRENAVKEQF 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
IV I + + ++ R K H ++E AR +RY F+K+ + I L++AH
Sbjct: 71 IVQTYCEKYDIPFFTEKIN-VNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAH 129
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
HADDQ E ++RL R S +G +G+ + YA + I+ +
Sbjct: 130 HADDQIETILMRLVRGSSSIGWSGIQPKRSMQGGYAIRPFLTITKSEIIEYANKHELAYE 189
Query: 260 EDPTNRSPLFVRNRIR 275
D +N +P + RNR R
Sbjct: 190 IDESNYNPQYTRNRYR 205
>gi|253988142|ref|YP_003039498.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
Length = 442
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 14/238 (5%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H +I +G SGG DS L L W+ +NQN + L AI + HGL ++ +
Sbjct: 16 LGEHKKILVGFSGGLDSSVLLYLLVNWRNQ-YNQNVQ-------LRAIHIHHGLNIKADQ 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
D + + +D R Q ++ AARD RY++F++ + +I L+ A
Sbjct: 68 WVKHCQQICDDWQVEFFFEKVT-IDAR--QKGIEAAARDARYQVFKRELQKDEI--LVTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H DDQAE F+L L R SG GLA M + + + + + +W
Sbjct: 123 QHLDDQAETFLLALKRGSGPAGLASMPPIAVFADTLLLRPLLGYSRNELEIYANEHCLNW 182
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+ED +N+ + RN +R+ + L + + Q+V + E + L+NE++
Sbjct: 183 IEDDSNQDDRYDRNFLRLHIMPLLNQRWPYFPQSVARSANLCGEQ-EQLLDELLNESL 239
>gi|167933096|ref|ZP_02520183.1| putative cell-cycle protein [candidate division TM7 single-cell
isolate TM7b]
Length = 228
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 26/196 (13%)
Query: 88 GVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+SGG DS+ L +L+ +KT ++ V+HG+R ES E+A+ V
Sbjct: 5 AISGGVDSIVLLDLLSKRYKTSD-------------IIVAHVNHGIRVESSEDADFVRKM 51
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ G+R + D +E ARD RY +K+ + ++ AHHADD E
Sbjct: 52 SAKYGMRYRQI-----DLNLGLHASEEVARDQRYTFLRKLSKEFNAKIV-TAHHADDIIE 105
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
+ L R +G GLA M+ + I+ +DL LL + +W ED TN S
Sbjct: 106 TIAINLVRGTGWRGLAVMS-AKDIYRPLTCFYKNDL-----LLYAKKNGLEWREDSTNSS 159
Query: 267 PLFVRNRIRMSLGDLS 282
L++RNR+R + L+
Sbjct: 160 DLYLRNRLRKRIKTLN 175
>gi|374321410|ref|YP_005074539.1| tRNA(Ile)-lysidine synthase [Paenibacillus terrae HPL-003]
gi|357200419|gb|AET58316.1| tRNA(Ile)-lysidine synthase [Paenibacillus terrae HPL-003]
Length = 482
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVVHMPLRLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G Q AAR++RY + + +A
Sbjct: 76 AEEVRRMARKLEIPFEMIRVDVPAYMKESGKGSQVAARELRYAFLHDTAAKWAAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE +L L R SG GLAGM + + + + ++ C+ + +
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLTRKEKNVQLIRPLLRMYKADLIEFCKFHDLSY 195
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V D +N S + RN IRM +
Sbjct: 196 VTDSSNLSSKYRRNSIRMDV 215
>gi|239607883|gb|EEQ84870.1| PP-loop family protein [Ajellomyces dermatitidis ER-3]
Length = 688
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L VSGGPDSMAL L + + + FI VDH RE S EEA+ V
Sbjct: 41 RIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFI-------VDHLAREGSTEEAHKV 93
Query: 144 SHRVSDMGIRCEIVRCDWLDG-RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + D+G I+ W G P + AR +RY++ K C + L + HH
Sbjct: 94 ADWLKDLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHL 153
Query: 202 DDQAELFILRLSRNS-GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DD E + R++R GL G+A I C HSI + + G+ W+
Sbjct: 154 DDNIETVLSRVARGQRQATGLKGVASVGHI-----PEC------HSIYGVAESGSSVWLV 202
Query: 261 DPTNR 265
D R
Sbjct: 203 DGQRR 207
>gi|91788722|ref|YP_549674.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
gi|91697947|gb|ABE44776.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
Length = 326
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 90/218 (41%), Gaps = 39/218 (17%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A+A P A+ +SGG DS AL V G A ++ + A+ + HGL+
Sbjct: 13 ALASFSPGLPFAVALSGGADSTALLV-------------GCAEKWPGQVRAVHIHHGLQA 59
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVC----IQ 189
+ + + + + + R + R G E AAR RY F V Q
Sbjct: 60 AADDFERHCQALCAQLNVPLAVKR---VQARHAPGESPEDAARKARYAAFGAVAREEWAQ 116
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
H I + IA HADDQ E +L LSR +G+ GLA M A D + H LL
Sbjct: 117 HAIKDIAIAQHADDQVETMLLALSRGAGLPGLAAMP---------ARWERDGIVYHRPLL 167
Query: 250 ICQGG---------NRDWVEDPTNRSPLFVRNRIRMSL 278
G WVEDPTN F RNRIR L
Sbjct: 168 AVPGALVRAWLVERGLPWVEDPTNTDERFTRNRIRARL 205
>gi|421849007|ref|ZP_16281992.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus NBRC
101655]
gi|371460276|dbj|GAB27195.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus NBRC
101655]
Length = 430
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 27/199 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR +S +EA
Sbjct: 42 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPKSGQEAQQTI 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 88 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
AE +R + +SG GLAGM + + ++ L+N + + +WV
Sbjct: 145 AETVWMRQNSSSGPEGLAGMGWITVRPDIRLIRPLLGFSRAALRN-----TLRQAHLEWV 199
Query: 260 EDPTNRSPLFVRNRIRMSL 278
+DP+N+ R R+R L
Sbjct: 200 DDPSNQDQRAERVRLRFLL 218
>gi|417860848|ref|ZP_12505903.1| hypothetical protein Agau_L100271 [Agrobacterium tumefaciens F2]
gi|338821252|gb|EGP55221.1| hypothetical protein Agau_L100271 [Agrobacterium tumefaciens F2]
Length = 443
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS G E G + A+T+DHGLR ES +E
Sbjct: 28 KPAH-ILVAISGGSDST-------GLLLALHEAAAEKGRDEVRVSAVTIDHGLRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A VS +D+GI R W +P G + EA+R RYRL +V + ++ H
Sbjct: 80 AEKVSLLCADLGIAHATRR--WGGIKPVSG-ISEASRLARYRLIAEVARKIDADLIATGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGN 255
DQ E +R +R+ G GL+GMA + ++ + + L + +I +
Sbjct: 137 TIGDQRETVAMRAARSGGEDNPGLSGMA-DAVLYDGHHWVMRPFLTCERQAIREFVSSRS 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 292
R W +DP+N + + R R+R SL D S +E A
Sbjct: 196 RGWFDDPSNENTRYERVRVRQSLTD-SQAQIDTEAAA 231
>gi|327355825|gb|EGE84682.1| PP-loop family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 688
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L VSGGPDSMAL L + + + FI VDH RE S EEA+ V
Sbjct: 41 RIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFI-------VDHLAREGSTEEAHKV 93
Query: 144 SHRVSDMGIRCEIVRCDWLDG-RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + D+G I+ W G P + AR +RY++ K C + L + HH
Sbjct: 94 ADWLKDLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHL 153
Query: 202 DDQAELFILRLSRNS-GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DD E + R++R GL G+A I C HSI + + G+ W+
Sbjct: 154 DDNIETVLSRVARGQRQATGLKGVASVGHI-----PEC------HSIYGVAESGSSVWLV 202
Query: 261 DPTNR 265
D R
Sbjct: 203 DGQRR 207
>gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
Length = 450
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 22/245 (8%)
Query: 87 LGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
L VSGG DSM L L + T F+ + + H LR+ES EE +
Sbjct: 22 LAVSGGVDSMVLLESFFKLQKKFPTLQFS-------------VVHIHHHLRKESDEEEEM 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + ++ I E+ W G ++ ++E AR RY+ ++ +++ +++AHHAD
Sbjct: 69 VRNFCNERSISIEVYH--WEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHAD 126
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE +++L+R S + G+AGM Y + + + ED
Sbjct: 127 DQAETVLMKLTRGSTIEGIAGMKSIRPFSEGYLIRPFLTVDKEDLYEYASIHQIPFKEDS 186
Query: 263 TNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 319
+N+S + RNR R + L + F ++ + + + + + + + + +
Sbjct: 187 SNQSLEYTRNRFRKEIIPLFKQENSKFNQKIHEFTKTLQEQQEVILMLANQWMEQELLEL 246
Query: 320 DQGYA 324
G++
Sbjct: 247 HNGWS 251
>gi|261198252|ref|XP_002625528.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
gi|239595491|gb|EEQ78072.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
Length = 688
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L VSGGPDSMAL L + + + FI VDH RE S EEA+ V
Sbjct: 41 RIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFI-------VDHLAREGSTEEAHKV 93
Query: 144 SHRVSDMGIRCEIVRCDWLDG-RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + D+G I+ W G P + AR +RY++ K C + L + HH
Sbjct: 94 ADWLKDLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHL 153
Query: 202 DDQAELFILRLSRNS-GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DD E + R++R GL G+A I C HSI + + G+ W+
Sbjct: 154 DDNIETVLSRVARGQRQATGLKGVASVGHI-----PEC------HSIYGVAESGSSVWLV 202
Query: 261 DPTNR 265
D R
Sbjct: 203 DGQRR 207
>gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
Length = 321
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 92/212 (43%), Gaps = 28/212 (13%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLT------AGWKTGGFNQNGEAGEFIDGLLAI 126
R A+A + P + + SGG DS+AL T AGW+ G
Sbjct: 15 RRALAHVDPGRTVVVACSGGADSLALLAATVFEGRRAGWRVVG----------------A 58
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGL+ S + A V +++ +G + ++ QG + AAR RY + ++
Sbjct: 59 TVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEA-AGQGP-EAAARQARYAVLDQL 116
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +L+ H DDQAE +L L+R SG LAGM S F DL
Sbjct: 117 AERFDADAVLLGHTRDDQAETVLLGLARGSGGRSLAGMRRSFDRFVRPLL----DLSRAD 172
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
CQ ++ DP N P F R R+R S+
Sbjct: 173 TATACQVAGIEFWSDPHNEDPAFTRVRVRRSV 204
>gi|410453279|ref|ZP_11307237.1| tRNA(Ile)-lysidine synthetase [Bacillus bataviensis LMG 21833]
gi|409933402|gb|EKN70330.1| tRNA(Ile)-lysidine synthetase [Bacillus bataviensis LMG 21833]
Length = 460
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 15/251 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ +GVSGGPDS+AL K +N ++ VDH R EES ++A
Sbjct: 21 KMIVGVSGGPDSLALLHYLLKEKD---KKNL-------TIVVAHVDHMFRGEESYQDAMF 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + E+VR D G Q AAR++RY + K+ +++ L++ HH
Sbjct: 71 VKSYCEQHQVPFEMVRIDVTKIMKATGKSSQVAAREVRYDFYFKMMKKYECPYLVLGHHG 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL+R S AG+ FS + + + L C+ D
Sbjct: 131 DDQMETMLMRLTRGSSGKARAGIPFSRPFHHGTIFRPFLCVTKAELQLYCKEHQLTPRVD 190
Query: 262 PTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
P+N ++ RNR R + + + Q + ++E + ++ V+
Sbjct: 191 PSNEKGIYSRNRFRKQVLPFLKEENSHVHEQFQRFSEELQSDEVFLEDLTIKSLDTVVSK 250
Query: 319 MDQGYAVIDLE 329
D+ ID++
Sbjct: 251 KDEDNITIDIK 261
>gi|383807774|ref|ZP_09963333.1| hypothetical protein IMCC13023_12950 [Candidatus Aquiluna sp.
IMCC13023]
gi|383298517|gb|EIC91133.1| hypothetical protein IMCC13023_12950 [Candidatus Aquiluna sp.
IMCC13023]
Length = 332
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFI 120
+ R A + L+P R+ + SGGPDSMAL ++ G K G
Sbjct: 11 VADVRRAVRDSLEALNLEPDSRVLVACSGGPDSMALAAALIFEGPKLGLR---------- 60
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARD 177
+ A+ VDHGL++ S E A + ++ ++G + E + P + AAR
Sbjct: 61 --VTAVVVDHGLQKASSEVAQSTAAKLEELGADPVVIETITVAETGNGP-----EAAART 113
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY ++ V+ + H+ +DQAE +L L+R SG+ +AGM Q F
Sbjct: 114 ARYEALERARKLVSAEVIFLGHNLEDQAETVLLGLTRGSGLRSIAGM----QDFDKNKKL 169
Query: 238 CHD--DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+K +L C + + +DP N+ P F R RIR L
Sbjct: 170 ARPLLGIKRDVLLQACLDQDIEAWQDPHNKDPKFTRVRIRQLL 212
>gi|375306223|ref|ZP_09771523.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Aloe-11]
gi|375081734|gb|EHS59942.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Aloe-11]
Length = 482
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G QEAAR++RY + + +A
Sbjct: 76 AEEVRSIARKLEIPFEMIRVDVPVYMKESGKGPQEAARELRYSFLHDTAAKWGAQRIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE +L L R SG GLAGM + + + ++ C+ + +
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLARTEKNVQLIRPLLRMYKADLIEFCRFYSLSY 195
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V D TN + + RN IRM +
Sbjct: 196 VTDSTNLTSKYRRNAIRMDV 215
>gi|337279181|ref|YP_004618653.1| tRNA(Ile)-lysidine synthetase [Ramlibacter tataouinensis TTB310]
gi|334730258|gb|AEG92634.1| Candidate tRNA(Ile)-lysidine synthetase [Ramlibacter tataouinensis
TTB310]
Length = 328
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 88/212 (41%), Gaps = 33/212 (15%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ L P H + + SGG DS AL A G + A+ V HGL+
Sbjct: 25 LQALNPPHPLGVAFSGGADSTALLFAAARQWPGAVH-------------AVHVHHGLQAA 71
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGV 194
+ + +G+ + R +D RP G E AAR RY+ +
Sbjct: 72 ADAFTEHCARSCEGLGVPLHVRR---VDARPAAGESPEDAARGARYQALAAAARDAGLAC 128
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+L+A HADDQAE +L LSR +G+ GLA M + H + +L +
Sbjct: 129 VLLAQHADDQAETLLLALSRGAGLPGLASMPAR--------FERHGVVFLRPLLAVPGAR 180
Query: 255 NRDW--------VEDPTNRSPLFVRNRIRMSL 278
R+W +EDPTN + RNRIR L
Sbjct: 181 LRNWAREQAIAFIEDPTNADTRYTRNRIRRDL 212
>gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
Length = 452
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + I +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINIAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWVE 260
DQAE F+++L R + L + S +IF L I + + E
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190
Query: 261 DPTNRSPLFVRNRIR 275
D TN+S + RNR+R
Sbjct: 191 DETNKSDDYQRNRLR 205
>gi|169797140|ref|YP_001714933.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
gi|169150067|emb|CAM87961.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
Length = 467
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 31/262 (11%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIA------LGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+ ++ + E + R+ LK + +G SGG DSM L L A
Sbjct: 3 STLSTFNEVWQRKFRHGVLKQAQEFSEKSSFLIGCSGGMDSMLLLHLMAQ---------- 52
Query: 115 EAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA 174
F + AI +DH L+++S E A +V+ + + + I I + + G+L+
Sbjct: 53 ---IFPQKIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKV-----QIANGNLEAQ 104
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR RY+ +Q+ +++I LL+AHH DQAE ILRL +GV GLA M
Sbjct: 105 ARQARYQAYQQHLQENEI--LLLAHHQQDQAETVILRLLSGAGVDGLAAMQAIDYRKDMT 162
Query: 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
+ DL I L +++DP N + R R +L + F QA+
Sbjct: 163 IWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWPFLTSRFPKMQQAL- 221
Query: 295 SACRRTRSYVEHVCSNLINEAV 316
RT SY+ S ++ E +
Sbjct: 222 ---SRT-SYLMQDASEILEEVL 239
>gi|399116370|emb|CCG19175.1| tRNA(Ile)-lysidine synthase [Taylorella asinigenitalis 14/45]
Length = 372
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 29/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ALG SGG DS+ L + QN A F L + V HGL + E V
Sbjct: 61 KVALGFSGGADSITLALKA---------QNS-ADRFNIELHLMHVHHGLIATADE---WV 107
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
H ++ ++ ++ + ++EAAR RYR C I +L+AHH D
Sbjct: 108 EHNLNFAQKHGFLIHILYVVIESSKKGIEEAARTARYRAIIDKCRSLNISDVLLAHHIVD 167
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL-------ICQGGNR 256
QAE + RL R +G+LG+ GM + S + ++ H LL + + N
Sbjct: 168 QAETILFRLIRGTGILGMQGMP---------SVSTKEGIRFHRPLLHRRIDRKLLENANI 218
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
++EDP+N P F R IR L + S F
Sbjct: 219 KYIEDPSNNDPKFSRGSIRKHLSEAFSDIF 248
>gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 455
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAG-WKTGGFNQNGEAGEFIDGLLAI 126
+A R G RIA+ VSGG DSMAL L W + + I
Sbjct: 10 KALHRAGVRQGWWNAKRIAVAVSGGSDSMALLWLMLNCWP--------------NDISVI 55
Query: 127 TVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
V+HG+R + SK +A V + I C I+ D K L++AAR +R+
Sbjct: 56 HVEHGIRGDSSKADACFVKEHCKKLDIPCFILSRDVPVEAMKGESLEQAARRIRHEALAS 115
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ + + H++DD E F L L+R SG GLAG+ F D
Sbjct: 116 KAEEIGSDFVALGHNSDDTVETFFLNLARGSGAYGLAGIPEVRDRFVRPVLEVSRDELRE 175
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + G WVED +N+ L++RNRIR
Sbjct: 176 LLKEVGWG----WVEDESNQEDLYLRNRIR 201
>gi|395333791|gb|EJF66168.1| adenine nucleotide alpha hydrolases-like protein [Dichomitus
squalens LYAD-421 SS1]
Length = 592
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAG-------EFIDGLLAITVDHGLRE 134
RIA+ SGGPDS AL L + K G ++N F +L+I V+HGL+
Sbjct: 28 RIAVANSGGPDSTALLFLLSATIRKQLGLDENDTPSSESPTSSRFPLHVLSIHVNHGLQA 87
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDW----LDGRPKQG--HLQEAARDMRY-RLFQKVC 187
+ +G + W +P +G + + R+ RY RLF +
Sbjct: 88 AASAMEETAVRMSERLGAPSIVEAIPWGTPPFPEKPAEGVANRERLIREARYHRLFAAMD 147
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM----------------AFSSQIF 231
+ V+ HHADDQ E I+R+S+ S GLAGM F ++
Sbjct: 148 AA-RTNVIAFGHHADDQVETAIMRMSQGSSNRGLAGMRPVRRWGMGHKDIEYSQFGAEGM 206
Query: 232 SSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 278
S+ + +L C+ N D+V DPTN P + +RN +R +L
Sbjct: 207 RSWVVRPFLQIPKGRLLATCEANNLDYVNDPTNFQPGITIRNSVRHAL 254
>gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
25745]
gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
25745]
Length = 456
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 123 LLAITVDHGLREESKEEANIV-----SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
L+ V+H LRE+S EE + H+++ M DW + Q ++ AAR+
Sbjct: 49 LIVAHVNHQLREQSIEEERFLHKWCRQHQITFM-------ETDWPKSQHPQHGVEAAARE 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F++V VLL AH+AD+QAE F++++ R + L G+ +
Sbjct: 102 FRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQVIRGGWLNQLNGIPERRTFAQGWLIR 161
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
++ Q W ED TNR+ F+RNR+R + +F+ E V+
Sbjct: 162 PFLKFTKQFLIETAQENKLRWFEDQTNRTTEFLRNRVRNEI----IPAFRKENPRVVEHI 217
Query: 298 RRTRSYVEHVCSNLINEAV 316
+ + + SNL+++ V
Sbjct: 218 QHYQDQLLE-QSNLVDQVV 235
>gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis]
Length = 308
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 20/217 (9%)
Query: 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M + FS+ + G+ KP RI + +SGG DS+ L +L F + + +F
Sbjct: 1 MNHLLQRFSQSLCRLGINKPRERIVIALSGGADSVCLLLL--------FKKV--SPQFGI 50
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDM 178
L A +HG+R +ES E+A V+ + + + E W P G EAAR +
Sbjct: 51 ELAAAHYNHGMRGKESDEDAAFVAELTNRLQVPLFLETAPLKWWQQEP--GTKMEAARRL 108
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY + Q + +AHHADD AE + + R SG+ GL+G+ F
Sbjct: 109 RYDFLSRSAEQAGARWIALAHHADDMAETVLFHMLRGSGIKGLSGIPAKRGPFVRPLLP- 167
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + + + W D +N S ++ RNRIR
Sbjct: 168 ---FRRKELEEFLKAEGQHWRHDSSNDSDVYTRNRIR 201
>gi|417809769|ref|ZP_12456450.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius GJ-24]
gi|335350693|gb|EGM52189.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius GJ-24]
Length = 452
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 35/284 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWVE 260
DQAE F+++L R + L + S +IF L I + + E
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMD 320
D TN+S + RNR+R + + L+ V+ Y + + +NL +A+
Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVL-------EYTQQLTNNL--QAIQ--- 238
Query: 321 QGYAVIDLEILNPSKIEDIFLSKFLA---LVLQFICQRQRPVRG 361
V D+++ SK E + +KF+ L + + +R V+G
Sbjct: 239 ---EVADVKLNKISKEETLDYNKFVKESPLWQRILLERYLEVKG 279
>gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121]
gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121]
Length = 434
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 29/197 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE-----E 139
I LG+SGG DS+AL L EAG + AI + HGL + + E
Sbjct: 27 IYLGLSGGVDSVALLHLLV-----------EAG-LGHRVKAIHIHHGLSQNADAWYRFCE 74
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A ++V+ G + E+ Q H ++EAAR RY +F ++ LL+A
Sbjct: 75 ALCQQYQVAFKGHKVEL---------DTQKHSIEEAARIARYDIFASYLNKN--AYLLLA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HHA DQAE + RL R +G GLAGM ++ + + Y +++ + W
Sbjct: 124 HHAGDQAETLMFRLLRGTGGKGLAGMPAKRELGAGFLYRPLLSFDKTNLIQYVKQNGLTW 183
Query: 259 VEDPTNRSPLFVRNRIR 275
VED +N+ F RN IR
Sbjct: 184 VEDESNQDEAFSRNHIR 200
>gi|16799328|ref|NP_469596.1| hypothetical protein lin0251 [Listeria innocua Clip11262]
gi|61216704|sp|Q92F56.1|TILS_LISIN RecName: Full=Bifunctional protein TilS/HprT; Includes: RecName:
Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
Full=Hypoxanthine-guanine phosphoribosyltransferase;
Short=HGPRT; Short=HGPRTase
gi|16412680|emb|CAC95484.1| fusion protein, N-terminal part similar to B. subtilis YacA
protein, C-terminal part similar to hypoxanthine-guanine
phosphoribosyltransferase [Listeria innocua Clip11262]
Length = 648
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS AL L W + + + ++H LRE +++E V
Sbjct: 23 KLLVAVSGGPDSFAL--LHFLWSANLVPK--------EAIAVAHLNHHLRENAEKEQLAV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I I D K Q ++E AR +RY F+KV ++ I L++AHHAD
Sbjct: 73 QTFCEERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S +G +G+ ++ YA + I+ + D
Sbjct: 133 DQIETILMRLVRGSSSIGWSGIQPKREVRGGYAIRPFLPITKAEIIEYATKHALPYEIDE 192
Query: 263 TNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 193 SNTSQEYTRNRYRTQL 208
>gi|169634324|ref|YP_001708060.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii SDF]
gi|260556042|ref|ZP_05828261.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
gi|169153116|emb|CAP02190.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii]
gi|260410097|gb|EEX03396.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
Length = 467
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 31/262 (11%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIA------LGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+ ++ + E + R+ LK + +G SGG DSM L L A
Sbjct: 3 STLSTFNEVWQRKFRHGVLKQAQEFSEKSSFLIGCSGGMDSMLLLHLMAQ---------- 52
Query: 115 EAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA 174
F + AI +DH L+++S E A +V+ + + + I I + + G+L+
Sbjct: 53 ---IFPQKIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKV-----QIANGNLEAQ 104
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR RY+ +Q+ +++I LL+AHH DQAE ILRL +GV GLA M
Sbjct: 105 ARQARYQAYQQHLQENEI--LLLAHHQQDQAETVILRLLSGAGVDGLAAMQAIDYRKDMT 162
Query: 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
+ DL I L +++DP N + R R +L + F QA+
Sbjct: 163 IWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWPFLTSRFPKMQQAL- 221
Query: 295 SACRRTRSYVEHVCSNLINEAV 316
RT SY+ S ++ E +
Sbjct: 222 ---SRT-SYLMQDASEILEEVL 239
>gi|423100937|ref|ZP_17088641.1| hypoxanthine phosphoribosyltransferase [Listeria innocua ATCC
33091]
gi|370792473|gb|EHN60340.1| hypoxanthine phosphoribosyltransferase [Listeria innocua ATCC
33091]
Length = 648
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS AL L W + + + ++H LRE +++E V
Sbjct: 23 KLLVAVSGGPDSFAL--LHFLWSAKLVPK--------EAIAVAHLNHHLRENAEKEQLAV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I I D K Q ++E AR +RY F+KV ++ I L++AHHAD
Sbjct: 73 QTFCEERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S +G +G+ ++ YA + I+ + D
Sbjct: 133 DQIETILMRLVRGSSSIGWSGIQPKREVRGGYAIRPFLPITKAEIIEYANKHALPYEIDE 192
Query: 263 TNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 193 SNTSQEYTRNRYRTQL 208
>gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
Length = 436
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 32/200 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ESKEE 139
R+ + +SGG DS+ L L + K IT+ H LR ES +
Sbjct: 20 RLLIAISGGLDSVVLTRLLSTLK-----------------FDITLAHCNFNLRGIESNLD 62
Query: 140 ANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A V ++ ++C + + L + K+ Q AAR++RY FQ++ +H +L
Sbjct: 63 AIFVEELAKELAVKCFSTSFKTEKL-AKEKKESTQIAARNLRYHWFQEISARHHFDYILT 121
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM--AFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AHHADD E F++ L+R +G+ G G+ + I +S + IL + N
Sbjct: 122 AHHADDNLETFLINLTRGTGLAGFTGIPPVHGNVIRPLLQFSREE------ILHFAKENN 175
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
W ED +N S ++RN+IR
Sbjct: 176 ICWREDQSNASTKYLRNKIR 195
>gi|383450608|ref|YP_005357329.1| tRNA(Ile)-lysidine synthase [Flavobacterium indicum GPTSA100-9]
gi|380502230|emb|CCG53272.1| tRNA(Ile)-lysidine synthase [Flavobacterium indicum GPTSA100-9]
Length = 435
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 112/265 (42%), Gaps = 38/265 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL-LAITVDH---GLR-EESKEE 139
+ + VSGG DSM L L +D + L I+V H LR EESKEE
Sbjct: 21 LLIAVSGGVDSMVLLHL------------------LDKINLNISVAHCNFQLRAEESKEE 62
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
N V + I + R + + +Q AAR++RY F V ++ LL
Sbjct: 63 ENFVKTYCEEHQIHLFVKRFATKEYAIQNKLSIQLAARELRYDWFNLVMKENNFDFLLTG 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HH DDQ E F++ +R +G+ GL G+ A ++ I +IL N
Sbjct: 123 HHLDDQVETFLINFTRGTGIEGLTGIPAINNNIIRVLL-----PFSREAILNYATENNLQ 177
Query: 258 WVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W ED +N S + RN+IR L +L+ +F + + + T V +N
Sbjct: 178 WKEDSSNASDKYFRNKIRHQVIPVLKELNP-NFLESFKNTLIHLKTTEQIVNKYSIETLN 236
Query: 314 EAVTVMDQGYAVIDLEILNPSKIED 338
+ + V D + +I SKI D
Sbjct: 237 KLIQVKDNKEFI---KISELSKIND 258
>gi|449295625|gb|EMC91646.1| hypothetical protein BAUCODRAFT_42609, partial [Baudoinia
compniacensis UAMH 10762]
Length = 263
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 47/215 (21%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRY 180
+A VDH LR+ S EA V ++ +GI ++ + G P+ H++ ARD RY
Sbjct: 20 FVAFVVDHRLRDGSTLEAQKVVQQLRRLGIESHMLAVNIKAGTDSPQVQHVESIARDHRY 79
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS---YAYS 237
+ K C H I LL+AHHADDQAE +LRL GL GM + I + Y S
Sbjct: 80 QALGKACYAHGINQLLVAHHADDQAETVLLRLVGKFYGTGLQGMKQNVPIPACQGIYGVS 139
Query: 238 ----------------CHDDLKNHSILLI--------------CQGGNRDWVEDPTNRSP 267
H +++ ++++ CQ N W ED TN
Sbjct: 140 ESGQPRHAMNPQKSEEPHMQIEDGGVMVMRPLLRFSKQDLISYCQSTNVKWFEDVTNADT 199
Query: 268 LFV-RNRIRMSLGDLSSCSFKSELQAVISACRRTR 301
+ RN +R +L A++ A RTR
Sbjct: 200 TYTKRNAVRYALS-----------HALLPAALRTR 223
>gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
gi|255267344|gb|EET60549.1| hypothetical protein BRYFOR_07366 [Marvinbryantia formatexigens DSM
14469]
Length = 471
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 45/297 (15%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFID 121
M KYR M AG K + GVSGG DS+ L VL K F+
Sbjct: 8 MEKYR------MIEAGDK----VIAGVSGGADSLCLLFVLMEYRKRVPFS---------- 47
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVR-CDWLDGRPKQGHLQEAARDMR 179
+LA+ V+HG+R +ES E+A V + I +V+ C R ++ ++EA R R
Sbjct: 48 -ILAVHVEHGVRGQESLEDAAFVEKICREHTIEYRLVQVCVPELARREKLSVEEAGRRAR 106
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-----AFSSQIFSSY 234
Y F+++ + + +AH+ DDQAE + +++R SG+ G G+ A + S
Sbjct: 107 YEAFERIRQETGADKIAVAHNRDDQAETVLFQIARGSGLTGAGGIRPVRGAVIRPLLSCS 166
Query: 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSEL 290
+ L+ HS + W D TN+ + RNRIR L + + + + +
Sbjct: 167 RAEIEEYLRGHS---------QTWRTDATNQETDYARNRIRHQILPLLEEQINSAGREHI 217
Query: 291 QAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL--NPSKIEDIFLSKFL 345
A+ +R ++Y+E + E + +G I + L PS +++ L + L
Sbjct: 218 AALAEELQRVQAYMEQETQKCLEE-LADFGEGTVQITVSALKEKPSLLQEYVLRESL 273
>gi|365852732|ref|ZP_09393089.1| tRNA(Ile)-lysidine synthetase [Lactobacillus parafarraginis F0439]
gi|363714308|gb|EHL97841.1| tRNA(Ile)-lysidine synthetase [Lactobacillus parafarraginis F0439]
Length = 466
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 48/289 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VS G DSM L L T ++ E I VDH LR++S++E +
Sbjct: 22 RVVVAVSTGVDSMVLLDLLHHLAT-------KSPEVI----VAYVDHQLRDQSRQETAFI 70
Query: 144 S-----HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
H+++ + W + G ++ AAR RYR F +V + VLL A
Sbjct: 71 KDYCQIHQLT-------LAMTTWPKAQHPGGGIETAARKFRYRFFGQVLDKWHATVLLTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DD AE +++L R + L G+A I + D+ I + W
Sbjct: 124 HHGDDLAETMLMKLVRGGQLASLVGIADCRSIANGKLVRPLLDMSKQEIRGYAADQHLTW 183
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL------- 311
ED TNR RNRIR + K E V+ R R Y + + L
Sbjct: 184 FEDATNRDLGIERNRIRHQV----LPELKRENPHVL---RHFREYSQQLTDYLDATDELV 236
Query: 312 ---INEAVT-VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQ 356
++ A T DQ V++L L S+ + L+L+L F+ +++
Sbjct: 237 GAAVDHAATKSSDQNEMVLNLNQLPTSR-------QGLSLILAFVIEKR 278
>gi|306490909|gb|ADM95027.1| predicted PP-loop superfamily ATPase [uncultured candidate division
JS1 bacterium]
Length = 460
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
+I + VSGGPDS+ L + N ++ L+ V HG+R +ES EA
Sbjct: 7 KIIVAVSGGPDSICLLDIL----------NHIKHQYNLSLIIAHVHHGIRIKESDVEARF 56
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + E + + R K +++A R +RY+ F+ + ++Q + + H+A
Sbjct: 57 VRLKSVHLKLPFEQLTISVPEIARNKGLSIEQAGRTVRYQFFKNLLNKYQAQKIALGHNA 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R SG+ GL G+ F C+ I CQ N + D
Sbjct: 117 DDQVETILMRIIRGSGLRGLRGIPPKRDPFIRPLIECN----RSEIEAYCQRKNIAFCID 172
Query: 262 PTNRSPLFVRNRIRMSL 278
+N+ P ++RN+IR L
Sbjct: 173 SSNKEPKYLRNKIRQQL 189
>gi|395769468|ref|ZP_10449983.1| tRNA(Ile)-lysidine synthase [Streptomyces acidiscabies 84-104]
Length = 335
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 90 SGGPDSMALCVLTA------GWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
SGG DSMAL + G + GG +TVDHGL+ S + A+ V
Sbjct: 41 SGGADSMALASALSFEAPRLGLRAGG----------------VTVDHGLQTGSADRAHEV 84
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
R+ ++G+ + GR +G + AARD RY ++H +L+ H DD
Sbjct: 85 VQRLRELGLD-PVESAAVTVGR--EGGPEAAARDARYSALDDAAVRHGATAVLLGHTRDD 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +L L+R SG+ L+GMA S Y L + C + +DP
Sbjct: 142 QAETVLLGLARGSGIRSLSGMAAVSGAGGRYRRPFL-QLDRQTARKACMVQSLPVWDDPH 200
Query: 264 NRSPLFVRNRIR 275
N P + R+R+R
Sbjct: 201 NADPAYTRSRLR 212
>gi|417787486|ref|ZP_12435169.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius NIAS840]
gi|418961010|ref|ZP_13512897.1| tRNA(Ile)-lysidine synthase [Lactobacillus salivarius SMXD51]
gi|334307663|gb|EGL98649.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius NIAS840]
gi|380344677|gb|EIA33023.1| tRNA(Ile)-lysidine synthase [Lactobacillus salivarius SMXD51]
Length = 450
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 23 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 72 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWVE 260
DQAE F+++L R + L + S +IF L I + + E
Sbjct: 130 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 188
Query: 261 DPTNRSPLFVRNRIR 275
D TN+S + RNR+R
Sbjct: 189 DETNKSDDYQRNRLR 203
>gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
Length = 502
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + +SGG DS+ L L G F + + I AIT+DH R S +EA V
Sbjct: 23 RIVVALSGGVDSLCLTYLL-----GQFKRIYKPSLQIT---AITIDHKYRAGSGKEAEKV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V G++ IV+ + R K + +E AR+ RY +F++VC + + L++AH+
Sbjct: 75 GVLVRPWGVK-HIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKSLIVAHNL 133
Query: 202 DDQAELFILRLSRNSGVLGLAGM 224
+DQ E F+ RL +NS + GL G+
Sbjct: 134 NDQIETFLQRLQQNSSIFGLVGL 156
>gi|436837263|ref|YP_007322479.1| tRNA(Ile)-lysidine synthase [Fibrella aestuarina BUZ 2]
gi|384068676|emb|CCH01886.1| tRNA(Ile)-lysidine synthase [Fibrella aestuarina BUZ 2]
Length = 453
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R+ + VSGG DSM L L +Q+G F G+ V+ LR ES+ +A
Sbjct: 19 RLLVAVSGGIDSMVLTDL--------LHQHG----FTFGI--AHVNFALRGAESEADAVF 64
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V +R +D G+ +R D ++G +Q AR +RY F ++C H + AH A
Sbjct: 65 VENRANDYGVPFHQIRFDTEAEAARRGESVQVTARQLRYGWFAQLCPAHGYVAVATAHQA 124
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQ--IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
DD E +L L+R +G+ GL G+ ++ + ++ + ++ + Q W
Sbjct: 125 DDVLETMLLNLTRGTGLTGLTGIPIRTEQGVVRPLWFASREQIEAY-----AQERGLPWR 179
Query: 260 EDPTNRSPLFVRNRIR 275
ED +N + + RNRIR
Sbjct: 180 EDTSNATDKYARNRIR 195
>gi|365926659|ref|ZP_09449422.1| tRNA(Ile)-lysidine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420264925|ref|ZP_14767524.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394429561|gb|EJF01989.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 450
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 14/194 (7%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VS G DSM L L + + VDH LR E +EE
Sbjct: 19 QKVLVAVSTGVDSMVLLDLLSTL----------PASVRPDIEVAYVDHKLRPEGQEETKF 68
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + + I+ +W ++ P G ++ AAR RY F V + I +LL AHHA
Sbjct: 69 IKNFCKEHRIKLHC--SEWKVESHPNTG-IEAAARGFRYNFFADVMKKTGIKILLTAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQAE F+++L R + L G+ + + Y + I + ED
Sbjct: 126 DDQAETFLMKLIRGGNIEQLRGIRPTRKFAEGYLVRLLLNYSKDEIREYASKRKITYFED 185
Query: 262 PTNRSPLFVRNRIR 275
TN S ++RNR+R
Sbjct: 186 VTNNSNDYLRNRVR 199
>gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 452
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWVE 260
DQAE F+++L R + L + S +IF L I + + E
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190
Query: 261 DPTNRSPLFVRNRIR 275
D TN+S + RNR+R
Sbjct: 191 DETNKSDDYQRNRLR 205
>gi|400598811|gb|EJP66518.1| PP-loop family protein [Beauveria bassiana ARSEF 2860]
Length = 658
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 16/183 (8%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
L +SGG DSMAL L + + KT + A + + A TVDH LR ES EA V+
Sbjct: 16 GLAISGGVDSMALAYLFSHYIKT--YKTQHIADNPVQDIFAATVDHRLRPESAAEAAEVA 73
Query: 145 HRVSDMGIRCEIVRCDWL-----DGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +G+R + +W D P KQ +++ AR +RYR+ H++ L A
Sbjct: 74 SNLRRLGLRAFVFPINWSYVLGHDVDPSKQANVESIARTLRYRVLGSFFSTHEVTSLFFA 133
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY----AYS---CHDDLKNHSILLIC 251
HH DDQ E ++RL G GL G+ ++ I Y AY D ++ H L
Sbjct: 134 HHRDDQYETILMRLLSGHGYRGLQGINKANSIPECYDMHRAYKSGLVDDQMRPHPFLKFS 193
Query: 252 QGG 254
G
Sbjct: 194 PAG 196
>gi|392947778|ref|ZP_10313404.1| tRNA(Ile)-lysidine synthetase [Lactobacillus pentosus KCA1]
gi|392436990|gb|EIW14888.1| tRNA(Ile)-lysidine synthetase [Lactobacillus pentosus KCA1]
Length = 448
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 15/210 (7%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A AGL P + + VS G DSM L L Q L+
Sbjct: 5 QKFNRRLAAAGLLSPQVTVVVAVSTGVDSMVLLRLLQQLPVTERPQ----------LIVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + + ++ DW + P+ G ++ A R RY+ F +
Sbjct: 55 HVNHHLRTQSRTEAAYLQRYCQTHQLDLKL--ADWQVTNHPEHG-VEAAGRQFRYQFFTR 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A S D
Sbjct: 112 VMQTTGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIAASRPFAGGQLVRPLLDWSKA 171
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
++ + + ED TN+ RNRIR
Sbjct: 172 ALRDYAAQHDVTYFEDATNQDVQLTRNRIR 201
>gi|78043578|ref|YP_359085.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995693|gb|ABB14592.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 449
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 17/237 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+ P ++ +GVSGGPDSMAL ++ E +F L + V+HGLR ES
Sbjct: 18 INPGEKVVVGVSGGPDSMALLFCLLKYR--------EEVDF--SLEVVHVNHGLRGRESD 67
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ +V GI + + D D + + +LQ AR RY F +V + + +
Sbjct: 68 LDEELVLDFTRKYGINFHVKKLD--DLKDLRENLQAVARQKRYEFFYEVLEKTGADKIAL 125
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
AH A D AE ++ + R +G GL G+ Y+ ++ + N
Sbjct: 126 AHTASDVAETVMMNILRGAGTEGLCGIWPVRDRIIRPLYTVF----RREVMSFVERKNIP 181
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINE 314
+ D +N P ++RN++R+ L + F ++++ + + V N +N+
Sbjct: 182 YRVDSSNLVPKYLRNKVRLKLFPFINEEFATDIEERLFNLALIKQEENQVLDNYLNK 238
>gi|116871602|ref|YP_848383.1| hypothetical protein lwe0182 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740480|emb|CAK19600.1| conserved hypothetical/hypoxanthine phosphoribosyltransferase,
fusion protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 648
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 11/196 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS AL L W + + + + ++H LRE +++E +V
Sbjct: 23 KLLVAVSGGPDSFAL--LHFLWSSKLVPK--------ESISVAHLNHCLREGAEKEQLVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + D Q ++E AR +RY+ F+KV ++ I L++AHHAD
Sbjct: 73 QTFCEEHHIPFFVEAVDIKKHAETIQKGIEETARIVRYKFFEKVMTENDINKLVLAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQ E ++RL R S +G +G+ ++ YA + I+ + + D
Sbjct: 133 DQIETILMRLVRGSSSIGWSGIQPKRKVTKGYAIRPFLPITKAEIIQYASKHDLPYEIDE 192
Query: 263 TNRSPLFVRNRIRMSL 278
+N S + RNR R L
Sbjct: 193 SNVSQEYTRNRYRTQL 208
>gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
Length = 440
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 60 LTDMT-KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGE 118
+TD+T + R+A M P RIA SGG DS L L A W E
Sbjct: 1 MTDLTIRLRQA----MQPWRTAPAWRIAF--SGGLDSSVLLHLLAAWAR---------YE 45
Query: 119 FIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDM 178
+ L AI V HGL+ + + + +GI +IVR G L++AAR +
Sbjct: 46 ELPALSAIHVHHGLQPAADGWPEHCAQVCTRLGIPLDIVRVQVAPG----ASLEQAARRV 101
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY F + + VLL A H DDQAE + RL R +GV GLA M S +
Sbjct: 102 RYAAFAERLGSGE--VLLGAQHRDDQAETLLFRLLRGAGVRGLAAMPASRPLGQGSLVRP 159
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
D + Q WVEDP+N F RN +R
Sbjct: 160 LLDCSRAELQAYAQRRGLAWVEDPSNADERFSRNFLR 196
>gi|385840857|ref|YP_005864181.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
5713]
gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
5713]
Length = 456
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWVE 260
DQAE F+++L R + L + S +IF L I + + E
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190
Query: 261 DPTNRSPLFVRNRIR 275
D TN+S + RNR+R
Sbjct: 191 DETNKSDDYQRNRLR 205
>gi|334365753|ref|ZP_08514703.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5]
gi|390945761|ref|YP_006409521.1| tRNA(Ile)-lysidine synthetase [Alistipes finegoldii DSM 17242]
gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5]
gi|390422330|gb|AFL76836.1| tRNA(Ile)-lysidine synthetase [Alistipes finegoldii DSM 17242]
Length = 447
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 33/288 (11%)
Query: 68 EAFSRRMAMAGLKPHH-RIALGVSGGPDSMALCVL--TAGWKTGGFNQNGEAGEFIDGLL 124
EAF + +A L H RI L VSGG DSM + L +G++ G + N +
Sbjct: 5 EAFRKYIADNDLATHDDRILLTVSGGVDSMVMLSLFTRSGYRVGVAHCNFQ--------- 55
Query: 125 AITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRL 182
LR ES E+ +V G+ R + + G ++ AAR +RY
Sbjct: 56 -------LRGAESDEDEVLVEEEARKYGVEFYNKRFETAAEMERTGESMEMAARRLRYAW 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDD 241
F + +H V+ IAHHADD E F + L R +G+ GL G++ ++ ++ +
Sbjct: 109 FDALSREHGYTVVAIAHHADDSIETFFINLLRGTGLRGLTGISTQVGKVVRPLMFASRKE 168
Query: 242 LKNHSILLICQGGNR-DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISAC 297
+ +++ NR + ED +NRS ++RN+IR+ L + F S ++ I+
Sbjct: 169 ILEYAV------ANRIPFREDSSNRSTKYLRNKIRLGLIPRIREINPKFTSLMRRNIARL 222
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 345
+ ++ H + EAVT + G I L+ ++P+ ++ + + L
Sbjct: 223 TDAQLFINHGIERIRGEAVTT-ENGLDTIHLDRIDPAFPQEFVIYELL 269
>gi|340751529|ref|ZP_08688340.1| tRNA(Ile)-lysidine synthase [Fusobacterium mortiferum ATCC 9817]
gi|229420495|gb|EEO35542.1| tRNA(Ile)-lysidine synthase [Fusobacterium mortiferum ATCC 9817]
Length = 441
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 39/272 (14%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID- 121
M+ + SR + ++ RI +G SGGPDS+ L + + E ID
Sbjct: 1 MSLFERVASRNKKESLVENGDRIVVGFSGGPDSVFLVEMLLKLR-----------EKIDF 49
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMR 179
++ + ++H LR EE++ + + + G++ + + G+ K L+EA R+ R
Sbjct: 50 DIVLVHINHLLRGEEAQRDEDFSINYGKSKGLKVFARKINITSLGKEKGLSLEEAGREAR 109
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS--------SQIF 231
Y +++V + + +AH+ DDQ E F+ RL+R +G+ GL G+A S+I+
Sbjct: 110 YSFYKEVLEKTNGNKIALAHNKDDQIETFMFRLTRGTGLSGLEGIATKRDRYIRPISEIY 169
Query: 232 SSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL----GDLSSCSFK 287
S + D+ N + D TN F RN IR+ L + FK
Sbjct: 170 KSEIVNYLDE------------NNISYCIDSTNLENEFTRNSIRIDLIPFIEKRYNPKFK 217
Query: 288 SELQAVISACRRTRSYVEHVCSNL-INEAVTV 318
++ ++I R ++E NE + +
Sbjct: 218 DKIFSLIEEIRDINIFIEKEIEQFSYNETINI 249
>gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT]
gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT]
Length = 464
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 23/239 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGGPDS+ L + K E ++A V+H LR E+ + +
Sbjct: 20 KVVVALSGGPDSICLLHILHTLK----------DEINISIVAAHVNHCLRGEAADNDEMY 69
Query: 144 SHRV-SDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++ ++GI+C + R D ++G + A R++RY+ F++V + + IAH+A
Sbjct: 70 VKKICEELGIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNA 129
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYS-CHDDLKNHSILLICQGGNRDWV 259
+DQAE ++R+ R +G+ GL G+ IF + D+++N+ C +
Sbjct: 130 NDQAETVLMRILRGTGLEGLVGIRPVRDNIFVRPIINLTRDEIENY-----CDINKLNPR 184
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRSYVEHVCSNLINE 314
D TN ++ RN+IR+ L +F S++ V++ + Y+ +V NE
Sbjct: 185 IDKTNFENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKVDNEYINNVAKEKYNE 243
>gi|423069875|ref|ZP_17058660.1| tRNA(Ile)-lysidine synthase [Streptococcus intermedius F0395]
gi|355363749|gb|EHG11485.1| tRNA(Ile)-lysidine synthase [Streptococcus intermedius F0395]
Length = 425
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H RI L +SGG DSM L ++ E E ++ LLA ++HG+R+ES
Sbjct: 16 FKYHRRILLAISGGLDSMTLFDWLYKYR--------EKLE-VEILLA-HINHGVRKESDF 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
E + +G++ + G ++ ARD RY F+K+ + Q L+ A
Sbjct: 66 EEEELKKIAKKLGVK---IFTSSFSG----PFSEQKARDFRYTFFKKIMKEEQCTALVTA 118
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HHADDQAE +R+ R S + ++GM Q F++ I + D+
Sbjct: 119 HHADDQAETIFMRILRGSRLFHISGMK-EKQKFAN----------GELIRPLLSFQKSDF 167
Query: 259 -----VEDPTNRSPLFVRNRIR 275
ED TN+ ++RNRIR
Sbjct: 168 PTIFHFEDWTNQENHYLRNRIR 189
>gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
101-4-CHN]
gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
101-4-CHN]
Length = 448
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L + + D L+ V+H LR +S++E +
Sbjct: 25 LVVAVSTGVDSMTLLHVLGSLLSA------------DQLVVAHVNHHLRAQSQQEEQFLR 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ MG+R + D + P+ G ++ AAR RYR F KV + + LL AHH +D
Sbjct: 73 QQCQQMGVRLYV---DQWENHPQHG-IENAARQERYRFFAKVMHETKAAYLLTAHHENDL 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE +++L R G+ + + + S++ + W ED TN
Sbjct: 129 AETMLMKLLRTGDATATVGIREARPFANGQLLRPLLRVTKKSLVEYARVHQLKWYEDATN 188
Query: 265 RSPLFVRNRIR 275
+ + +RNR+R
Sbjct: 189 QEDMTLRNRVR 199
>gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925]
gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925]
Length = 467
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 19/216 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGGPDS +C+L +K E L+A ++H LR EE+ ++
Sbjct: 25 KVVVAVSGGPDS--ICLLHILYKL--------KEELGITLVAAHINHCLRGEEADKDEEY 74
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ I C + + D +G + A R++RY F +V + + +AH+A
Sbjct: 75 VRKFCENLNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLNKVGANKIAVAHNA 134
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYS-CHDDLKNHSILLICQGGNRDWV 259
+DQAE ++R+ R +G+ GL G+ A IF D+++N+ C N +
Sbjct: 135 NDQAETILMRMLRGTGLEGLVGIRAVRDNIFLRPIIDITRDEIENY-----CDVNNLNPR 189
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
D TN ++ RN+IR+ L +F S++ V++
Sbjct: 190 IDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLN 225
>gi|418965924|ref|ZP_13517680.1| tRNA(Ile)-lysidine synthetase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383341175|gb|EID19441.1| tRNA(Ile)-lysidine synthetase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 425
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H RI L +SGG DSM L ++ E E ++ LLA ++HG+R+ES
Sbjct: 16 FKYHRRILLAISGGLDSMTLFDWLYKYR--------EKLE-VEILLA-HINHGVRKESDF 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
E + +G++ + G ++ ARD RY F+K+ + Q L+ A
Sbjct: 66 EEEELKKIAKKLGVK---IFTSSFSG----PFSEQKARDFRYTFFKKIMKEEQCTALVTA 118
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HHADDQAE +R+ R S + ++GM Q F++ I + D+
Sbjct: 119 HHADDQAETIFMRILRGSRLFHISGMK-EKQKFAN----------GELIRPLLSFQKSDF 167
Query: 259 -----VEDPTNRSPLFVRNRIR 275
ED TN+ ++RNRIR
Sbjct: 168 PTIFHFEDWTNQENHYLRNRIR 189
>gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like protein [Psychrobacter
cryohalolentis K5]
gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like protein [Psychrobacter
cryohalolentis K5]
Length = 535
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 81/165 (49%), Gaps = 26/165 (15%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
LT M +Y E R RI L SGG DS+AL L Q G F
Sbjct: 28 LTSMAEYGEQLQGR----------RIWLACSGGRDSLALAALCVQ-----LYQQGRL-PF 71
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
+ LL V+HGL+ +S A V++ I C I++ GH ++AAR R
Sbjct: 72 LPQLL--HVNHGLQADSAIWAAHVANWAKAQKIPCTILQAH------VNGHDEQAARQAR 123
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
Y + + +Q VLL+AHHADDQAE ++RL + +GV GL+GM
Sbjct: 124 YDVMRAQL--NQDDVLLLAHHADDQAETVLMRLIQGAGVNGLSGM 166
>gi|258513582|ref|YP_003189804.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
771]
gi|257777287|gb|ACV61181.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
771]
Length = 473
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 102/253 (40%), Gaps = 21/253 (8%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEAN 141
+I L VSGGPDS+A+ VL G + L ++H R EES +A
Sbjct: 23 KILLAVSGGPDSVAMLDVLFCLRHDLGIS-----------LHIAHLNHMFRGEESLGDAE 71
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V + + + K G Q AAR +RY + Q + +AHH
Sbjct: 72 FVRELAVRYNLPVTVRHINVPSFMEKTGLSSQPAARTVRYSFLDETAAQESASRIALAHH 131
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
ADDQAE +L R SG GL GM F C LK I C+ N W
Sbjct: 132 ADDQAETVMLHFLRGSGAAGLRGMLPVRDNFYIRPMLC---LKRQDIEDYCKKKNLRWRV 188
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC----RRTRSYVEHVCSNLINEAV 316
D +N + RN+IRM L L + + L A ++ R Y+E + N N
Sbjct: 189 DSSNLKTDYRRNKIRMYLLPLLEKEYNNNLTATLNRLADIFREEEDYLELMTRNEYNNLT 248
Query: 317 TVMDQGYAVIDLE 329
+ G ++L+
Sbjct: 249 VLKSAGEICLNLK 261
>gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
11741]
gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
11741]
Length = 453
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 15/196 (7%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ ++ L VS G DSM VL +G N E +DH LRE+SKEE
Sbjct: 24 NRKVLLAVSTGVDSM---VLLSGMLKLSKVLNIEIN-------VAYIDHQLREQSKEETK 73
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH
Sbjct: 74 FIKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHG 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL--KNHSILLICQGGNRDWV 259
DDQAE F+++L R + L + S +IF L I + +
Sbjct: 132 DDQAETFLMKLIRGGNIQQLQAIQ-SVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYY 190
Query: 260 EDPTNRSPLFVRNRIR 275
ED TN+S + RNR+R
Sbjct: 191 EDETNKSDDYQRNRLR 206
>gi|398819039|ref|ZP_10577611.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. BC25]
gi|398026544|gb|EJL20143.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. BC25]
Length = 475
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 33/291 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +G+SGG DS AL + A N+ + + L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGISGGNDSTALLHILAS-----LNKQYQ---YHWKLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
++A ++G+ + D K G QEA+RD+RYRL+++V + L
Sbjct: 67 QDALFAEELCRELGVAFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGGTKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSS-------QIFSSYAYSCHDDLKNHSILL 249
+AHHADDQ E + R R S + GL GM ++ + +L+ +
Sbjct: 127 LAHHADDQVETILFRFVRGSRLHGLTGMPKRRMLADCPIELVRPLLHKTRQELEGY---- 182
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
C+ ED +N+S + RN +R M L + + ++ + A A R+ + +
Sbjct: 183 -CREHQLVPREDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQDEALLMR 241
Query: 307 VCSNLINEAVTVMDQGYAVIDLEILNPSKIE--DIFLS-KFLALVLQFICQ 354
+ + E VT+ + A +++ K + D+ L + + L+L ++ +
Sbjct: 242 LAREQLKE-VTIEKKPEAF----LMDNDKFQTCDVALQRRMITLILSYLSK 287
>gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
Length = 473
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 31/207 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI + VSGG DS+ L L+A W K ++ L A+T+DHG+R E+ +EA
Sbjct: 57 RIGIAVSGGSDSLGLLCLSAEWAKLNNWH-----------LQALTIDHGMRPEAAQEAVY 105
Query: 143 VSHRVSDMGIRCEIV--RCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + I + RC P+ Q QE AR R+ LF + + I L++ H
Sbjct: 106 VQSICETLNIPHTTMNWRC------PQDQRATQENARMARHLLFCEWAKRQNIQFLMLGH 159
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--------DLKNHSILLIC 251
DD+ E ++R S NS GLA M SQ S D +L + I
Sbjct: 160 TLDDRLETLLIRESSNSSEYGLAAMP--SQSCSPIWPEGRDLKLLRPANNLTRQDLSAIL 217
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ WV DP+N+ + R RIR L
Sbjct: 218 IETDISWVCDPSNQDDKYERVRIRKKL 244
>gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 321
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 35/250 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P +I L VSGG DSM C+L W+ A + LA+ +H LR+ES +EA
Sbjct: 19 PGDKIILSVSGGMDSM--CMLHLFWRL--------AKKMDIVFLAVNFNHNLRKESVKEA 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + ++ GI C + + K ++ A R++RY +++ +++ + AH
Sbjct: 69 ETVKNLSAEFGIDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAH 128
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY----------SCHDDLKNHSILL 249
+A+D AE ++RL R SG AG+ +I + + ++NH +
Sbjct: 129 NANDNAETVLMRLLRGSG--NFAGIPQKRKINRNIVVIRPLLPVKRKFIEEYVRNHKL-- 184
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS-ACRRTR--SYVEH 306
+ D +N S ++ RN+IR+SL + ++ + + +C ++R +Y+E
Sbjct: 185 -------PFCTDKSNFSDIYTRNKIRLSLMPVFEKINPMAVEHIFALSCIQSRENAYLEE 237
Query: 307 VCSNLINEAV 316
V + + + V
Sbjct: 238 VSAKFLKKCV 247
>gi|124006425|ref|ZP_01691259.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
marina ATCC 23134]
gi|123988082|gb|EAY27753.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
marina ATCC 23134]
Length = 450
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P I L VSGG DS+ L L A K+ G + G+ S+E+
Sbjct: 17 PQDNILLAVSGGIDSVVLTDLFAQIKSHGQVAIAHCNFQLRGV-----------ASEEDE 65
Query: 141 NIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V GI C + R D + + ++G +Q AR++RY F+++ + L AH
Sbjct: 66 EFVKQLAQHYGIPCFVTRFDTYTLAQAQKGSIQMIARNLRYAWFEQLRTKEGYHYLATAH 125
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSS-QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H +D E +L L R +G+ GL G+ I ++ ++++ ++ Q W
Sbjct: 126 HQNDMVETVLLNLVRGTGIAGLHGIKVKQGHIIRPMLFASREEIEAYA-----QEKGLKW 180
Query: 259 VEDPTNRSPLFVRNRIR 275
ED +N+ + RNR+R
Sbjct: 181 CEDASNQDNKYYRNRLR 197
>gi|348589981|ref|YP_004874443.1| tRNA(Ile)-lysidine synthetase [Taylorella asinigenitalis MCE3]
gi|347973885|gb|AEP36420.1| tRNA(Ile)-lysidine synthetase [Taylorella asinigenitalis MCE3]
Length = 372
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 29/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ALG SGG DS+ L + QN A + L + V HGL + E V
Sbjct: 61 KVALGFSGGADSITLALKA---------QNS-ADRYNIELHLMHVHHGLIATADE---WV 107
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
H ++ ++ ++ + ++EAAR RYR C I +L+AHH D
Sbjct: 108 EHNLNFAQKHGFLIHILYVVIESSKKGIEEAARTARYRAIIDKCRSLNISDVLLAHHIVD 167
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL-------ICQGGNR 256
QAE + RL R +G+LG+ GM + S + ++ H LL + + N
Sbjct: 168 QAETILFRLIRGTGILGMQGMP---------SVSTKEGIRFHRPLLHRRIDRKLLENANI 218
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 286
++EDP+N P F R IR L + S F
Sbjct: 219 KYIEDPSNNDPKFSRGSIRNHLSEAFSDIF 248
>gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
autotrophicum HRM2]
gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
autotrophicum HRM2]
Length = 362
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 137/331 (41%), Gaps = 29/331 (8%)
Query: 61 TDMTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGE 118
T T + E R + + G+ P I LGVSGGPDS+AL + L K G
Sbjct: 5 TKRTPFTEKVCRTLEVHGMVTPGDSILLGVSGGPDSVALAIALVLLRKDLGIT------- 57
Query: 119 FIDGLLAIT-VDHGLRE-ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAA 175
L I ++H LR+ ES + V + + ++ D R +Q L+E A
Sbjct: 58 -----LGIAHINHLLRDKESDRDEAFVQELARSLELPFHPLKIDVATLARERQISLEETA 112
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R++RY F +C + + H DD AEL ++ L R SG GLAG+ +
Sbjct: 113 REVRYAFFTDLCRHNGYTRTAVGHTLDDNAELVLMNLLRGSGPRGLAGIPPVRDHWIIRP 172
Query: 236 YSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
H IL + + +V D TN +F+RNRIR L L + + ++
Sbjct: 173 LIGH---TKGEILAFLREKAQAYVVDSTNLETVFLRNRIRNELLPLLRKEYNPRITENLN 229
Query: 296 ACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNP--SKIEDIFLSKFLALVLQFIC 353
R + S + NEA V + I LE P S D F AL + +
Sbjct: 230 RVSRIMGEED---SWMDNEAGAV----FKTIRLEKKGPGVSLCLDGFNGLLPALKRRIVR 282
Query: 354 QRQRPVRGSTSKLLLHYIRTFPCKTSLTAAG 384
+ + V+G ++ L ++ + T+ G
Sbjct: 283 KAIQAVKGDLKRITLPHVDAVAALAAATSPG 313
>gi|440635874|gb|ELR05793.1| hypothetical protein GMDG_01871 [Geomyces destructans 20631-21]
Length = 602
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L +SGG DSMAL L + N + F A VDH +R S EA+ V+
Sbjct: 52 IGLAISGGVDSMALAFLCSE------IHNKDRFRF----RAFVVDHKVRAGSGHEAHAVA 101
Query: 145 HRVSDMGIRCEIVRCDWLDG-RPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + I +I++ +W +G PK+ + + AR R++ K C H I L +AHH D
Sbjct: 102 KILEEKDIPTDILKIEWAEGLNPKEASNFESLARTYRFQALGKACRDHGIQSLFLAHHRD 161
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI 230
DQ E ++R+ GL GM S I
Sbjct: 162 DQVETVLMRMINGHRKDGLCGMRLSGDI 189
>gi|385800613|ref|YP_005837017.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
Length = 464
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L VSGGPDS+A+ L K E + +DH R+ESK EA+ +
Sbjct: 20 RILLAVSGGPDSLAMLDLFDKLKE----------ELKIEIAVAHLDHMFRKESKSEADFI 69
Query: 144 SHRVSDMGIRC--------EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
GI+ +I++ + + + AAR R+ F+ + + +L
Sbjct: 70 ERFAKKRGIQFFSKRVNLPQIIKTNKVSA-------EAAARQERFTFFKNIIAKENFDLL 122
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AHH DQAE +L L R G+ GL G+ ++ IL CQ
Sbjct: 123 ALAHHKGDQAETVLLNLFRGCGLKGLGGIELQAKFKELELIHPMLIFTKKEILAYCQQQK 182
Query: 256 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 295
D +N+ ++ RN IR + L +++ VI+
Sbjct: 183 LSPSFDSSNQENIYSRNIIRNEILPLIEKKINPKVKEVIA 222
>gi|399003085|ref|ZP_10705756.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM18]
gi|398123489|gb|EJM13038.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM18]
Length = 445
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 12/228 (5%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +G+ E+VR G L+ AARD
Sbjct: 52 ESLPALTAVHVHHGLQVAADAWPEHCQSVCDALGVPLEVVRVQVEPG----ASLERAARD 107
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F + H VLL H DDQAE + RL R +GV GL+GM + +
Sbjct: 108 ARYGAF--IAATHAGEVLLTGQHRDDQAETLLFRLMRGAGVRGLSGMPSERPLGRGHLLR 165
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
D+ + W+EDP+N+ F RN +R + + + + QAV +
Sbjct: 166 PLLDVTRAELEAYAAEHQLSWIEDPSNQDRQFSRNYLRHQVFPVLTARWP---QAVATMA 222
Query: 298 RRTRSYVEHVCSNLINEAVTV-MDQGYAVIDLEILNPSKIEDIFLSKF 344
R E L++E + + Q V D + L +E L K
Sbjct: 223 RSAAHLSE--AQGLLDELAQIDLAQAGTVSDFDWLGLPSLELAPLEKL 268
>gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
Length = 430
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + +V D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|306490847|gb|ADM94967.1| predicted PP-loop superfamily ATPase [uncultured candidate division
JS1 bacterium]
Length = 476
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 16/197 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VS GPDS+ L + N ++ L+ V HG+R +ES EA
Sbjct: 23 KVIVAVSSGPDSICLLDIL----------NHVKHKYNLSLIIAHVHHGIRIKESDIEARF 72
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + + E + D R K +++A R +RY+ F + ++Q + + H+A
Sbjct: 73 VRLKSAHLKLPFEQLTISVPDIARNKGLSIEQAGRTIRYQFFNNLLNKYQAQKIALGHNA 132
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++R+ R SG+ GL G+ F C+ I CQ N + D
Sbjct: 133 DDQVETILMRIIRGSGLRGLRGIPPKRGAFIRPLIECN----RSEIEAYCQRNNIAYCID 188
Query: 262 PTNRSPLFVRNRIRMSL 278
+N+ P ++RN+IR L
Sbjct: 189 SSNKEPKYLRNKIRNQL 205
>gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
Length = 466
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 113/262 (43%), Gaps = 31/262 (11%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIA------LGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+ ++ + E + R+ LK + +G SGG DSM L L NQ
Sbjct: 3 STLSTFNEVWQRKFRHHVLKQAQEFSENSSFLIGCSGGMDSMLLLHL--------MNQI- 53
Query: 115 EAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA 174
F + AI +DH L+E+S E +V+ + + + I I + DG +L+
Sbjct: 54 ----FPQKIRAIYIDHQLQEQSAEWGKLVASQATSLNISYIIQKVQISDG-----NLEAQ 104
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR RY+ +Q+ Q++I LL+AHH DQAE ILRL +GV GLA M +
Sbjct: 105 ARQARYQAYQQHLQQNEI--LLLAHHQQDQAETAILRLLSGTGVDGLAAMQAIDYRENMT 162
Query: 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 294
+ DL I +++DP N + R R L S F QA+
Sbjct: 163 IWRPFLDLTREQIASWAAQLEVKYIDDPMNYDTHYDRVWCREELWPFLSKRFPKMQQAL- 221
Query: 295 SACRRTRSYVEHVCSNLINEAV 316
RT SY+ S ++ E +
Sbjct: 222 ---SRT-SYLMQDASEILEEVL 239
>gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
Length = 458
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 16/209 (7%)
Query: 76 MAGLKPH-HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
+AG P R+ + VSGGPDS+AL VL + + + A TV+HGLR
Sbjct: 30 LAGHTPSPQRLLIAVSGGPDSLALLVLASRLPN-----------LVFAVHAATVNHGLRR 78
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EA V+ +G+ E + + DG G+LQ AAR+ RYRL + +
Sbjct: 79 EADMEAAHVAEVSQRLGVPHETLTWEGWDG---SGNLQAAAREARYRLLAEEARRIGASA 135
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSILLICQG 253
+L AHH DQ E + L R LAGM S + ++ + +
Sbjct: 136 ILTAHHRGDQIETVLQALERGDRENRLAGMRASRDLEPRLTLVRPFLEIPAEQLWAVLAE 195
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLS 282
V+DP+N F R R R ++ +S
Sbjct: 196 AGIASVDDPSNADRRFTRVRHRHAIAGMS 224
>gi|110635497|ref|YP_675705.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1]
gi|110286481|gb|ABG64540.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1]
Length = 446
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ VSGG DS+AL L F + +G LLA+TVDHGLR +S EA V
Sbjct: 25 VVAAVSGGGDSLALLFLLQD-----FLERQPSGP---SLLAVTVDHGLRPDSATEARAVG 76
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ GI +R W + +PK G + AAR+ R L + + ++ AH ADDQ
Sbjct: 77 ELAAARGIAHRTLR--WEEAKPKAG-ISAAAREARLALLARAAREAGTDLVFTAHTADDQ 133
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR--DWVEDP 262
AE +RLSR G A + +F + L L G R W EDP
Sbjct: 134 AETLAMRLSRGGGR--GAAGIAPATLFEGDVWFTRPLLHTRRAALRTYLGERGISWFEDP 191
Query: 263 TNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 322
+NR P F R R+R L + + + +E + +R R ++LI A T + G
Sbjct: 192 SNRDPRFERARVRACLDEDRTQALLAEAE----NAQRLRQEQGRAAADLIGSAATRVAPG 247
>gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
23769]
gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
23769]
Length = 440
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+AL +LT W+ ++ + VDHGLR ES +EA
Sbjct: 41 VAIAVSGGADSLALALLTRRWRRA--------------VVGLVVDHGLRAESADEAARTV 86
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++M I ++R L G + + E AR +RY+ C + LL+ HH DDQ
Sbjct: 87 RCLAEMDIPARLLR---LRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQ 143
Query: 205 AELFILRLSRNSGVLGLAGMA---------FSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AE ++R +SG GLA MA F + + L++ I
Sbjct: 144 AETVMMRQRASSGPDGLAAMAQAVAGTDVRFVRPLLGVCKADLYATLRHAGI-------- 195
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
DWVEDP+N R R R +L
Sbjct: 196 -DWVEDPSNTDLRTERARARHAL 217
>gi|386320197|ref|YP_006016360.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
ED99]
gi|323465368|gb|ADX77521.1| tRNA(Ile)-lysidine synthetase, putative [Staphylococcus
pseudintermedius ED99]
Length = 429
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM L +T + Q L + V HGLRE S++EA +
Sbjct: 11 IVVAVSTGIDSMVLLHQLLYDETLTYRQ----------LTCLHVHHGLREASEQEATFIQ 60
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H I + R D D + +Q AR+MRY+ F + Q LL AHH DDQ
Sbjct: 61 HYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN---HSILLICQGGNRDWVED 261
E RL GM S I + Y + L N H I Q + + ED
Sbjct: 121 VETVFYRLFTGKSTRSSLGM---STIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177
Query: 262 PTNRSPLFVRNRIR 275
+N S +VRN IR
Sbjct: 178 TSNASNTYVRNDIR 191
>gi|310816574|ref|YP_003964538.1| cell cycle protein [Ketogulonicigenium vulgare Y25]
gi|385234186|ref|YP_005795528.1| tRNA(Ile)-lysidine synthetase-like protein [Ketogulonicigenium
vulgare WSH-001]
gi|308755309|gb|ADO43238.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25]
gi|343463097|gb|AEM41532.1| tRNA(Ile)-lysidine synthetase-like protein [Ketogulonicigenium
vulgare WSH-001]
Length = 407
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 16/205 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DS+A +L G + A TVDH LR +S EA +V
Sbjct: 22 RIGVAVSGGSDSLAALLLLHEAAPGR-------------IWAATVDHNLRADSAAEAEMV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I + D G+L AR RY L + + ++IAH+ +D
Sbjct: 69 QRFCAARDIAHYTLPWQPAD---MAGNLPHRARIARYSLLSTWAREAFLAGVVIAHNRED 125
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +++ L R++G+ GL+ M ++ Y L ++ + + G WV+DPT
Sbjct: 126 QAETYLMNLGRSAGIDGLSAMRDRWRVEGVPFYRPFMALSRKALRDVLRAGAISWVDDPT 185
Query: 264 NRSPLFVRNRIRMSLGDLSSCSFKS 288
N P + R R+R L L+ ++
Sbjct: 186 NDDPHYQRVRLRRLLPQLAEAGIET 210
>gi|315274600|ref|ZP_07869470.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
gi|313615770|gb|EFR89028.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
Length = 648
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W++ + + + ++H LRE + +E +V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWESKLIPK--------EAISVAHLNHHLRENAAKEQQLV 72
Query: 144 SH--RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ ++ E V + Q ++E AR +RY F+K+ + I L++AHHA
Sbjct: 73 EIFCKQHNLPFYTEEVDVKK-QAQVLQKGIEETARIVRYDFFEKIMAEQNINKLVLAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++RL R S +G +G+ ++ YA + I+ + + D
Sbjct: 132 DDQIETILMRLVRGSSSIGWSGIQPKREVKGGYAIRPFLPITKAEIIEYAHKHSLAYEID 191
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS-------YVEHVCSNLINE 314
+N S + RNR R L K E AV + R Y+E + S+L+ +
Sbjct: 192 ESNTSQEYTRNRYRAQLLPF----LKQENPAVYAHFERFSEETSEDFGYLEELASDLLQK 247
>gi|365875284|ref|ZP_09414813.1| tRNA(ile)-lysidine synthetase [Elizabethkingia anophelis Ag1]
gi|442588321|ref|ZP_21007133.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Elizabethkingia anophelis R26]
gi|365756932|gb|EHM98842.1| tRNA(ile)-lysidine synthetase [Elizabethkingia anophelis Ag1]
gi|442562026|gb|ELR79249.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Elizabethkingia anophelis R26]
Length = 433
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 31/258 (12%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ + L +SGG DSM L L F + G + E A V++ LR E++N
Sbjct: 22 NQKFLLALSGGADSMVLADL--------FLKAGISFE------AAHVNYHLR---GEDSN 64
Query: 142 IVSHRVSDMGIRCEIVRCDW----LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ V D + I+ + D +P + ++ AR++RYR F ++ + Q+ +++
Sbjct: 65 LDQQVVEDFCRQYNIILHKYDVTERDKKP-ENSIELWAREIRYRFFFRLLEEEQLDFIVM 123
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
HH +DQ E FI+ LS+ SG+ GL+G+ +++I + D I +
Sbjct: 124 GHHLNDQLETFIINLSKASGITGLSGIPENNNKILRPLLHITKAD-----IYKFAKENGV 178
Query: 257 DWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ ED TN+S ++RN+IR + + ++ F IS + ++++E +++
Sbjct: 179 SFREDHTNQSRDYLRNQIRHDISPEMEKTNPHFWENFDKSISFLNQAKNFIEEQLQKILD 238
Query: 314 EAVTVMDQGYAVIDLEIL 331
+ + ++D E L
Sbjct: 239 DIIISEKNDEIILDKEKL 256
>gi|422420813|ref|ZP_16497766.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171]
gi|313639795|gb|EFS04533.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171]
Length = 648
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL---AITV---DHGLREESK 137
++ + VSGGPDS+AL F Q + L+ AI+V +HGLRE +
Sbjct: 23 KLLVAVSGGPDSLALL---------HFLQ-------MSNLVPKKAISVAHLNHGLRENAI 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E IV + I I + + R K Q ++E AR RY F+K+ + I L
Sbjct: 67 KEQLIVRNYCEKHEIPFFIEEVN-VKKRAKTMQKGIEETARLARYEFFEKIMAEENINKL 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
++AHHADDQ E ++RL R S +G +GM + A + I+
Sbjct: 126 VLAHHADDQIETILMRLVRGSSSIGWSGMQPKRSMRGGQAIRPFLSITKAEIIDYANRHE 185
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
+ D +N SP + RNR R +
Sbjct: 186 LTYEIDESNSSPKYTRNRYRKEI 208
>gi|406036842|ref|ZP_11044206.1| cell cycle protein [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 423
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 13/206 (6%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
AI +DH L++ S E +V + + + C I + + + G+L++ AR RY+ +Q
Sbjct: 20 AIYIDHQLQQMSTEWGTLVQKQAEVLKVPCIIQKV-----KVEAGNLEQQARQARYQAYQ 74
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+ H+ VL++AHH DQAE +LRL +GV GLA M + + + DL
Sbjct: 75 QHLQSHE--VLVLAHHQQDQAETVLLRLFSGAGVNGLAAMRQIDKRNNMTIWRPFLDLSR 132
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 304
I Q D+V DPTN + R R L D+ F ++Q ++ RT SY+
Sbjct: 133 AHIEQWSQQLGFDYVTDPTNHDTHYDRAWCREVLWDVIQTRF-PKMQGAVA---RT-SYL 187
Query: 305 EHVCSNLINEAVTVMDQGYAVIDLEI 330
+ ++ E V D Y D EI
Sbjct: 188 MQDTAEIL-ENVLQKDWQYCATDNEI 212
>gi|354603567|ref|ZP_09021565.1| hypothetical protein HMPREF9450_00480 [Alistipes indistinctus YIT
12060]
gi|353348947|gb|EHB93214.1| hypothetical protein HMPREF9450_00480 [Alistipes indistinctus YIT
12060]
Length = 451
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 26/200 (13%)
Query: 84 RIALGVSGGPDSMALCVLTA--GWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
RI L VSGG DSM + L A G++ G + N + LR E++E+
Sbjct: 23 RILLAVSGGVDSMVMLSLFAQSGYRIGVAHCNFQ----------------LRGPEAEEDE 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+V+ +G+ +R D L + G +Q AAR +RY F +C +H + IAH
Sbjct: 67 QLVAECAEKLGVPHYNIRFDTLREMERTGESVQMAARRLRYDWFDSLCDEHGYTHIAIAH 126
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSS-QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H DD E F + L R +G+ GL G++ ++ ++ +S ++ ++++ +
Sbjct: 127 HGDDSVETFFINLLRGTGLRGLTGISVTNGRLIRPLLFSTRKEILDYALQKKIP-----F 181
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
ED +N S ++RN+IR+ +
Sbjct: 182 REDSSNASTKYLRNKIRLGI 201
>gi|336394547|ref|ZP_08575946.1| tRNA(Ile)-lysidine synthase [Lactobacillus farciminis KCTC 3681]
Length = 441
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 106/253 (41%), Gaps = 59/253 (23%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VSGG DSM L V++ K D + VDH LR ES E N
Sbjct: 22 KVLVAVSGGVDSMVLLHVVSRVLKP-------------DDFAIVDVDHNLRPESASEVNF 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + ++ G R W +PK ++ AAR+ RY F+KV I+ LL AHH +
Sbjct: 69 VKNYCAENGYR--FFTTKWRQ-KPKDIGMEAAARNFRYDFFRKVMIKEDFDTLLTAHHNN 125
Query: 203 DQAELFILRLSRN----------------SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
D AE +++L R+ SG + + FS + + YA HD NH
Sbjct: 126 DLAENILMKLIRSGNAYEVVSLKEQRPFGSGQIVRPLLDFSKRQLAEYA-DIHD--INH- 181
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL--------GDLSSC--SFKSELQAVISA 296
V+D TN + +RNR+R ++ G L S F +L A+I
Sbjct: 182 ------------VQDETNFDNITMRNRLRNNIFPELQKENGQLLSHFRFFDQQLTALIDL 229
Query: 297 CRRTRSYVEHVCS 309
++ +E
Sbjct: 230 AKKQFVTIEQAMD 242
>gi|339006629|ref|ZP_08639204.1| tRNA(Ile)-lysidine synthase [Brevibacillus laterosporus LMG 15441]
gi|338775838|gb|EGP35366.1| tRNA(Ile)-lysidine synthase [Brevibacillus laterosporus LMG 15441]
Length = 476
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 40/304 (13%)
Query: 68 EAFSRRMAMAGLK-PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
E +RM L PH I +GVSGG DS AL + ++ E ++ L A+
Sbjct: 3 EKVQKRMEQDRLLLPHESIVVGVSGGVDSTALLHI--------LSKMNEQYQYGWKLYAV 54
Query: 127 TVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPK------QGHLQEAARDMR 179
++HG R EES ++A V +G++C + + P+ QG Q A+R++R
Sbjct: 55 HLNHGFRGEESDQDAAYVEDLCHTLGVKC----YSFYESVPEIMKETGQG-PQVASRELR 109
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-------AFSSQIFS 232
Y+ +++V + + +AHHADDQ E + R+ R + + G GM A ++
Sbjct: 110 YQYYRQVAKEVGATKVALAHHADDQVETILFRMMRGTSLHGFTGMPQRRWLHAEQIELVR 169
Query: 233 SYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSE 289
+ ++L+ + C+ N D +N S + RN +R + + ++
Sbjct: 170 PLLHVFREELEAY-----CEANNLQPRHDSSNDSRKYKRNLLRHEVTPHLQQVNLRYREH 224
Query: 290 LQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS-KFLALV 348
+ + R Y++ + +N + + ++D + L K D+ L + + L+
Sbjct: 225 VLQLAEMARVDDDYLQKLSQEALNRIIVKQESDKIILDRKCL---KTFDLALQRRMIPLI 281
Query: 349 LQFI 352
L ++
Sbjct: 282 LSYL 285
>gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152]
gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152]
Length = 436
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQ 229
+Q AR++RY FQ++ +HQ+ +L AHHADD E F++ L+R SG+ G G+ A +
Sbjct: 96 IQITARELRYNWFQELMDEHQLDYILTAHHADDNLETFLINLTRGSGLDGFTGIPAINGN 155
Query: 230 IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
I + + IL + N +W ED +N S +VRN+IR
Sbjct: 156 IVRTLLPFSRSE-----ILNFAKSNNIEWREDASNASIKYVRNKIR 196
>gi|418000176|ref|ZP_12640372.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei T71499]
gi|410537096|gb|EKQ11675.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei T71499]
Length = 436
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRTWHGRRLVRPLLPYSKTMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
N + C ED +N P + RN++R
Sbjct: 168 ----NQHNVRFC--------EDSSNADPHYARNQLR 191
>gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners DSM 13335]
gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1]
gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners DSM 13335]
Length = 430
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWINNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|433451901|ref|ZP_20412878.1| tRNA(Ile)-lysidine synthetase [Mycoplasma sp. G5847]
gi|431933632|gb|ELK20199.1| tRNA(Ile)-lysidine synthetase [Mycoplasma sp. G5847]
Length = 401
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 22/245 (8%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID--GLLAITVDHG 131
M ++ + + + VSGGPDS+ L + ID L+ V++
Sbjct: 1 MNLSNINKFEKYLIAVSGGPDSVFLLC--------------NVIKIIDPNNLVVCHVNYN 46
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
R +S + IVS ++ E++ K+ + AR+ RY F K+ ++
Sbjct: 47 FRSDSNIDQKIVSDLCKKFNLKLELLNVQKNYDLLKEN-FESWAREKRYDFFNKIAKKYN 105
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
I LL+AH+ +D E ++L+L RN ++ G+ S Y D+K IL
Sbjct: 106 IYNLLVAHNLNDLIETYLLQLQRN-NLVDYYGLRTVSMYKDLVVYRPLLDVKKSEILNYL 164
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
+ D TN + RN+IR +L + S K+++ + + ++ + N
Sbjct: 165 HTNKISYAIDSTNSDTKYQRNKIRATLNENSFTKIKNQINKANDSLKN----IKKIVDNY 220
Query: 312 INEAV 316
+NE +
Sbjct: 221 LNENI 225
>gi|304312484|ref|YP_003812082.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1]
gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
HdN1]
Length = 463
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 114/265 (43%), Gaps = 29/265 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ +G SGG DS L L W + ++A+ V+H L +
Sbjct: 21 RLLVGFSGGLDSTVLLYLARRWSL----------QSSVPIVAVHVNHQLSAHAFAWQQHC 70
Query: 144 SHRVSDMGI--RCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
GI CE V D H ++ AAR RY++FQ++ VLL+
Sbjct: 71 VDLCEAWGIALHCEAVHVD--------AHGVGVESAARAARYQVFQRLAKPSD--VLLLG 120
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E F LRL R SGVLGLA M S+ L + + W
Sbjct: 121 HHRDDQVETFFLRLMRGSGVLGLASMDDVSEWQGLCIVRPLLGLSKSVLHEFAKSQQWTW 180
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAV---ISACRRTRSYVEHVCSNLINEA 315
VED +N+S + RN +R+ + + + S +AV + CR + ++ + + + E
Sbjct: 181 VEDESNQSDRYDRNFLRLEVLPRLAQRWPSSAEAVERSVRHCREAQGLLDELAAMDV-ET 239
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIF 340
+ D G +V L +L+ S+ ++
Sbjct: 240 LCQTDGGISVDRLRLLSLSRARNVL 264
>gi|302900689|ref|XP_003048310.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
77-13-4]
gi|256729243|gb|EEU42597.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
77-13-4]
Length = 677
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 91 GGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM 150
GG DSMAL LT+ F + A G LA+ +DH LR+ES EEA V+ + +
Sbjct: 46 GGVDSMALAYLTSRM-LQTFRRAKIADNPAHGALAVVIDHRLRDESTEEAMQVAKELRKL 104
Query: 151 GIRCEIVRCDW-------LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
++ + W LD R K +L+ AR RYR C L AHH DD
Sbjct: 105 DLKTTVTALAWKEEKRNGLDPR-KLPNLEGLARTYRYRALGNHCNYQGATSLFFAHHRDD 163
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQI------FSSYAYSCHDDLKNHSILL 249
Q E ++RL G GL G+ ++ I Y DD +N S L
Sbjct: 164 QYETVLMRLLGGHGYRGLQGIREANSIPECYDMHGVYKSGLIDDQRNQSPFL 215
>gi|399027173|ref|ZP_10728764.1| tRNA(Ile)-lysidine synthetase [Flavobacterium sp. CF136]
gi|398075409|gb|EJL66527.1| tRNA(Ile)-lysidine synthetase [Flavobacterium sp. CF136]
Length = 436
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 110/250 (44%), Gaps = 39/250 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH------GLREESK 137
++ L VSGG DSM L L F ITV H GL ES
Sbjct: 20 KLFLAVSGGLDSMVLLHL-----------------FQKLPYEITVLHCNFQLRGL--ESF 60
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
+ N + + I I + D + K L Q AAR++RY F ++ H+ +
Sbjct: 61 GDQNFIQNYCDQNNIPVFITQFD-TEAFAKDYKLSTQVAARELRYNWFYELLEIHEFDYI 119
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
L AHHADD E FI+ LSR +G+ GL G+ + +I D+ IL Q
Sbjct: 120 LTAHHADDNLETFIINLSRGTGLDGLTGIPEQNDKIIRPLLPFSRDE-----ILKYAQEN 174
Query: 255 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINE 314
N +W ED +N S ++RN+IR L + K + ++T+SY++ ++ +
Sbjct: 175 NIEWREDSSNSSNKYLRNKIRHDLVPI----LKEINPDFLKVFQKTQSYLQE-SKEMVED 229
Query: 315 AVTVMDQGYA 324
A ++ Q A
Sbjct: 230 ASIMIYQQVA 239
>gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans]
gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
[Herminiimonas arsenicoxydans]
Length = 465
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ SGG DS AL L + T Q+G L A V HGL + +
Sbjct: 33 KIAIAYSGGLDSAALLYLLRAYAT----QHGLE------LFAFHVHHGLSLNADQWLAHC 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +G+ + R + + K G ++EAAR RY ++C H + +LL AHH DD
Sbjct: 83 QQQCAGLGVAFDARRVQ-IANQDKSG-VEEAARHSRYAALGEMCRAHDVPLLLTAHHQDD 140
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL---ICQGGNRD--- 257
QAE +L+L R SGV GL+GM S ++ D L + ++L+ + Q D
Sbjct: 141 QAETVLLQLLRGSGVAGLSGM-------DSVNHAA-DLLGDATLLMGRPLLQLARADLEK 192
Query: 258 --------WVEDPTNRSPLFVRNRIR 275
+VED +N P + RN +R
Sbjct: 193 IVTSNAIAFVEDESNLDPRYARNALR 218
>gi|359399555|ref|ZP_09192557.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
pentaromativorans US6-1]
gi|357599145|gb|EHJ60861.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
pentaromativorans US6-1]
Length = 337
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 106/239 (44%), Gaps = 36/239 (15%)
Query: 52 SHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFN 111
S A + + ++RE + A R+A+ VSGGPDS AL +L A G
Sbjct: 9 SAARLIPQAERVARFREGLAALWPEAIDAQPARLAIAVSGGPDSTALLLLAAAALPGRVG 68
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
A TVDHGLR ES +EA V+ + +G+ E +R + G++
Sbjct: 69 -------------AATVDHGLRPESAQEAADVAALCARLGVPHETLRVE-----VAPGNV 110
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
Q AR RY + Q+ L AHHADDQAE ++RL+R SGV GLAG Q+
Sbjct: 111 QAEARSARYAALARWIEARQLAALATAHHADDQAETLLMRLNRASGVAGLAGTRGRGQVP 170
Query: 232 S----------SYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 280
+ S ++ + +L Q DP+N + R R+R +L D
Sbjct: 171 DCDIPLLRPVLGWRRSELAEVVAEAGILAAQ--------DPSNADDKYDRVRVRKALAD 221
>gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
Length = 430
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESKIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + +V D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|456063201|ref|YP_007502171.1| tRNA(Ile)-lysidine synthetase [beta proteobacterium CB]
gi|455440498|gb|AGG33436.1| tRNA(Ile)-lysidine synthetase [beta proteobacterium CB]
Length = 441
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A K RI L +SGG DS+ L K N E E + A + HGL++ +
Sbjct: 13 AKTKAVKRIGLALSGGLDSVVLLDTVC--KAVQANAIQEPTE----VWAFHIHHGLQKPA 66
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ + + + D QG+++ AR RY +CI+H I LL
Sbjct: 67 DQWLEFCEKLAKKYQVHFDFRLLHFSDK--TQGNIEARARAERYDALTDLCIEHGIEDLL 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHS---ILLICQ 252
+AHH +DQAE +L+L R +GV GL+GM + + L N S + +
Sbjct: 125 LAHHQNDQAETVLLQLLRGAGVAGLSGMPLHRTNANQGDPITLWRPLLNQSRAELEAYAK 184
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSL 278
WVEDP+N++ + RN IR +
Sbjct: 185 ARKLKWVEDPSNQNTRYRRNAIRKEI 210
>gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
Length = 465
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 134/318 (42%), Gaps = 43/318 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+R+ L +SGG DSM L L + + ID +A V+H +REES EEA
Sbjct: 19 NRLLLAISGGVDSMVLLHLI---------EQLQKKIPIDFAVA-HVNHKIREESIEEAAY 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V I W + + K +++ AR RY F + Q + LL AHH D
Sbjct: 69 VCTYCKQKNI--PYYETSWEEAKDK--NIEARARKFRYSFFANLMKQERYTHLLTAHHLD 124
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRD 257
DQAE ++++ R + + LAG+ ++ + + ++N++I
Sbjct: 125 DQAETMLMKMVRGTTLKNLAGIQLQQDFSIGKLVRPFLIFSKEQIRNYAI-----DKKIM 179
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNLINE 314
+ ED TN S + RNR+R + L + F + + S ++ + + N+
Sbjct: 180 YFEDNTNYSDSYARNRMRHQIIPLLKQENKQFLEHMAGLSQQITAASSLIDSMITPYFNQ 239
Query: 315 AVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLALVL----QFICQRQRP-----VRGST- 363
V + Y +D + + + FL F +L I Q Q + GST
Sbjct: 240 WVHQSNAIWYLQLDDLLKQTEEFQLFFLMDFFQRILIPENVLINQAQMKQALTILNGSTP 299
Query: 364 -SKLLL----HYIRTFPC 376
+K++ H+IRT+ C
Sbjct: 300 QAKMIFGSNWHFIRTYNC 317
>gi|392966289|ref|ZP_10331708.1| tRNA(Ile)-lysidine synthase [Fibrisoma limi BUZ 3]
gi|387845353|emb|CCH53754.1| tRNA(Ile)-lysidine synthase [Fibrisoma limi BUZ 3]
Length = 444
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEAN 141
R+ L VSGG DSM + L F+Q I +AI V+ GLR ++S +A
Sbjct: 21 RVLLAVSGGLDSMVMTHL--------FHQ-------IRQPIAIAHVNFGLRGDDSDGDAR 65
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V ++ G+ + D + K+G +Q ARD+RY F ++ Q + AHH
Sbjct: 66 FVQNKAQQYGVPFHLTHFDTVAEAHKRGISIQMVARDLRYDWFAQLVQQEGYACVATAHH 125
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
+D E +L L R +G+ GL G+A + + ++ D+L+ + Q W
Sbjct: 126 QNDVLETLLLNLVRGTGLAGLHGIAIRQNNLIRPLWFATRDELE-----IYAQEQGLQWR 180
Query: 260 EDPTNRSPLFVRNRIR 275
ED +N +VRNR+R
Sbjct: 181 EDSSNAEDKYVRNRLR 196
>gi|333397743|ref|ZP_08479556.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum KCTC 3527]
gi|406599409|ref|YP_006744755.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum JB7]
gi|406370944|gb|AFS39869.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum JB7]
Length = 435
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 79 LKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLRE 134
L+ HH I + VSGG DS+ L + + D L + V++ LRE
Sbjct: 9 LQLHHWEATIIVAVSGGVDSVVLL-------------HTLRQQLPDTKLVVAHVNYHLRE 55
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
ES + V H E + WL+ P +++ ARD RY+ F+++ ++
Sbjct: 56 ESDADEKFVRHLADKYHAIFE--QTAWLNV-PDTA-VEKQARDFRYQFFEQLASKYHTAT 111
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-QIFSSYAYSCHDDLKNHSILLICQG 253
+++AHHADDQAE +L+L R ++ LAGM + +I + +L ++ Q
Sbjct: 112 VVVAHHADDQAETVLLKLIRGGQLMQLAGMRQQNRRIVRPFLLITKQELVSY-----AQN 166
Query: 254 GNRDWVEDPTNRSPLFV-RNRIR 275
N +W ED TN ++ RN +R
Sbjct: 167 HNLNWHEDKTNHDAMYTPRNFLR 189
>gi|294101776|ref|YP_003553634.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
12261]
gi|293616756|gb|ADE56910.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
12261]
Length = 470
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK-EEANIVS 144
+ VSGG DS+AL +F G + + ++HG+RE S E+A V
Sbjct: 42 VAVSGGSDSVALLWFFV--------------QFWPGKVIVAHLEHGIRERSSIEDAAFVK 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
G EI K L+E AR +RY F+++ V+ + H ADD
Sbjct: 88 KLAEAWGCEFEIEHVVVPRLLRKGESLEEGARRVRYDFFEQIAASEGATVVALGHTADDI 147
Query: 205 AELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
AE + L R SG GL G+ Q + +DL+ + Q W EDPT
Sbjct: 148 AETLLFNLCRGSGPFGLVGIPEVRGQFIRPLSGWWREDLRR-----LLQARGICWREDPT 202
Query: 264 NRSPLFVRNRIR 275
N +VRNRIR
Sbjct: 203 NLDTTYVRNRIR 214
>gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
gi|334317493|ref|YP_004550112.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti AK83]
gi|384530619|ref|YP_005714707.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti BL225C]
gi|384537321|ref|YP_005721406.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti SM11]
gi|407721802|ref|YP_006841464.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti Rm41]
gi|433614568|ref|YP_007191366.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein
[Sinorhizobium meliloti GR4]
gi|61216708|sp|Q92JY3.1|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
gi|333812795|gb|AEG05464.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti BL225C]
gi|334096487|gb|AEG54498.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti AK83]
gi|336034213|gb|AEH80145.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti SM11]
gi|407320034|emb|CCM68638.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti Rm41]
gi|429552758|gb|AGA07767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein
[Sinorhizobium meliloti GR4]
Length = 453
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 89/212 (41%), Gaps = 34/212 (16%)
Query: 84 RIALGVSGGPDSMALCVL----TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
RI + VSGG DSM L V A + GF+ L A TVDH LR +S E
Sbjct: 21 RILVAVSGGSDSMGLLVALHSAIAADERRGFS-----------LAACTVDHALRPQSACE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + +GI I C W +P G +Q AAR+ RY L + + I H
Sbjct: 70 AEDVAAFCAALGIAHRI--CRWEGAKPSTG-IQAAARNKRYELLAEAADALGADCIAIGH 126
Query: 200 HADDQAELFILRLSRNSG-------------VLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
DDQ E +R++R G A M + +I+ + L
Sbjct: 127 TRDDQQETVAMRIARGKGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFL---GLARAE 183
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
I Q W++DP+N +P F R R+R +
Sbjct: 184 IRSFLQARGVSWIDDPSNANPAFERVRVRARI 215
>gi|422849801|ref|ZP_16896477.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
Length = 425
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 31/261 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+KV + L+ AHHADDQAE +RL R + + L+GM + +++C + ++
Sbjct: 104 EKVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGELIR 157
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRT 300
+ ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 158 PLFTFHKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDW 217
Query: 301 RSYVEHVCSNLINEAVTVMDQ 321
++ + H+ +L E V V Q
Sbjct: 218 QTALSHLTRDLDIENVQVFHQ 238
>gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
gi|424844649|ref|ZP_18269260.1| tRNA(Ile)-lysidine synthetase [Jonquetella anthropi DSM 22815]
gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
gi|363986087|gb|EHM12917.1| tRNA(Ile)-lysidine synthetase [Jonquetella anthropi DSM 22815]
Length = 419
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
L+ + K+R A +RR G +P +A+ VSGG DSM L L
Sbjct: 3 LSAVEKFRAA-ARRDGWLG-QP---LAVAVSGGGDSMGLLWLC----------------L 41
Query: 120 IDGL---LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
GL AI +DHGLR S +E V +G+ R D R + ++ A R
Sbjct: 42 ASGLRPCAAIHLDHGLRPSSADERRFVEETCGRLGLPFFWKRIDAASRRLQGESVEVACR 101
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
RY ++ V+ +AH ADDQAE ++ + R G+ GLAG+ ++
Sbjct: 102 RERYAFLREAAQSAGASVVALAHTADDQAETVLMNICRGCGLWGLAGIPRRRGMWVRPVL 161
Query: 237 SCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
D + + + + WVED +N + RNR+R L
Sbjct: 162 ----DFRRDELRDLLKDAGWTWVEDESNSDRRYTRNRVRADL 199
>gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|61216585|sp|Q7N8N0.1|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 442
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 37/270 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L + +I +G SGG DS L L W+ NQ+ + + L AI + HGL ++ +
Sbjct: 16 LGEYKKILVGFSGGLDSSVLLHLLVNWR----NQHNQKIQ----LRAIHIHHGLNLKADQ 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDW----------LDGRPKQGHLQEAARDMRYRLFQKVCI 188
+ H C+++ DW +D R Q ++ AARD RY++F+
Sbjct: 68 ---WIEH--------CQLICDDWQVEFHSARVTIDAR--QKGIEAAARDARYQVFKSELQ 114
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + VL+ A H DDQAE F+L L R SG GLA M + + D + +
Sbjct: 115 KDE--VLVTAQHLDDQAETFLLALKRGSGPAGLASMPSIAVFADTLLLRPLLDYSRNELE 172
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 305
+W+ED +N+ + RN +R M L + F S C ++
Sbjct: 173 KYASKHRLNWIEDDSNQDDRYDRNFLRLHIMPLLNQRWSHFPKAAARSASLCGEQEQLLD 232
Query: 306 HVCSNLINEAVTVMDQGYAVIDLEILNPSK 335
+ + + E +T D ++ L + + +K
Sbjct: 233 ELLNESLKELIT-QDGALGIVSLAVCSEAK 261
>gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
Length = 430
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWINNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLVYIVDYTNQENETLRNRLR 198
>gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
Length = 473
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 27/290 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L H + +GVSGG DSM L K EA L+ VDH R ES+
Sbjct: 15 LPSHSTVVVGVSGGADSMGLLHYLDSIK--------EAKRL--KLVVAHVDHMFRGAESE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ + V + I E + D K+ +Q AAR+ RY ++KV +++ VL
Sbjct: 65 EDMDFVKEQCEKREILFEAEQIDVSAYQNEKKLSVQVAARECRYAFYEKVMRKYRADVLA 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+ HHADDQ E ++RL R S + G AG+ + + I+ +
Sbjct: 125 LGHHADDQVETILMRLGRGSSMSGHAGILPKRTFGAGVIVRPFLTVTKSEIMEYLKANEV 184
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK---SELQAVISACRRTRSYVEHVCSNLIN 313
+ DP+N + RNR+R + + F QA + + Y+ +
Sbjct: 185 PYRHDPSNDKDAYRRNRLRHHILPILKEEFPGLHQRFQAFSEQIQESEQYIGALMEKEWI 244
Query: 314 EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL-----ALVLQFICQRQRP 358
+ + + V+D + L +F++K L L+L ++ + P
Sbjct: 245 DVIKSKENDRVVLDRKPL-------LFMAKPLQRRGIQLILNYLYNNEIP 287
>gi|385331012|ref|YP_005884963.1| cell cycle protein MesJ [Marinobacter adhaerens HP15]
gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [Marinobacter adhaerens HP15]
Length = 449
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 13/200 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + +SGG DS L L A + +G +G + AI ++H L+ + +
Sbjct: 24 LPDHTRLWVALSGGLDSTLLLHLAA-------HCHGCSG----AVRAIHINHQLQPNASD 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +G+ + R GR ++EAAR RY + + + + +L+A
Sbjct: 73 TESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGKGDL--VLMA 130
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + R+ R SGV GLAGM S ++ ++ + + + W
Sbjct: 131 HHGDDQAETVLFRMLRGSGVAGLAGMPASRELGTATLVRPLLGFERAELERWARVAGLSW 190
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V+DP+N F RN +R ++
Sbjct: 191 VDDPSNTDQRFDRNFLRHTV 210
>gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599]
gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC
100599]
Length = 475
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 29/250 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +G+SGG DS AL + A + ++ L A+ ++HG R EE++
Sbjct: 15 LLPGESVVVGISGGNDSTALLHILASL--------NKQYQYQWKLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
++A ++G+ + D K G QEA+RD+RYRL+++V + L
Sbjct: 67 QDALYAEELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSS-------QIFSSYAYSCHDDLKNHSILL 249
+AHHADDQ E + R R S + GL GM ++ + +L+ +
Sbjct: 127 LAHHADDQVETILFRFVRGSRLNGLTGMPKRRMLADCPIELVRPLLHKTRQELEGY---- 182
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
C+ ED +N+S + RN +R M L + + ++ + A A R+ E
Sbjct: 183 -CREHQLVPREDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQD----EA 237
Query: 307 VCSNLINEAV 316
+ L NE +
Sbjct: 238 LLMRLANEQL 247
>gi|358449649|ref|ZP_09160131.1| tRNA(Ile)-lysidine synthetase [Marinobacter manganoxydans MnI7-9]
gi|357226171|gb|EHJ04654.1| tRNA(Ile)-lysidine synthetase [Marinobacter manganoxydans MnI7-9]
Length = 449
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 13/200 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + +SGG DS L L A + +G +G + AI ++H L+ + +
Sbjct: 24 LPDHARLWVALSGGLDSTLLLHLAA-------HCHGCSG----AVRAIHINHQLQPNASD 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +G+ + R GR ++EAAR RY + + + + +L+A
Sbjct: 73 TESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGKGDL--VLMA 130
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + R+ R SGV GLAGM S ++ ++ + + + W
Sbjct: 131 HHGDDQAETVLFRMLRGSGVAGLAGMPASRELGTATLVRPLLGFERAELERWARVAGLSW 190
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
V+DP+N F RN +R ++
Sbjct: 191 VDDPSNTDQRFDRNFLRHTV 210
>gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
gi|259533717|sp|B1YGQ4.1|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
Length = 414
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 34/272 (12%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DSM L L + N + L+ + V HGLR+ES EEA
Sbjct: 8 PKEPLLVAVSGGCDSMVLAHLL-------YEANHD-------LMIVHVHHGLRKESDEEA 53
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V + + R +W P Q A R RY FQ+V + L++AHH
Sbjct: 54 EAVRAWAEARRVGIRMTRLEWEGQAPSQA----ACRTRRYAFFQEVMAETGRRHLVLAHH 109
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS---ILLICQGGNRD 257
DDQ E +++L R G AG+ +I S H L +S + +
Sbjct: 110 RDDQLETLLIQLIR-----GEAGVDGIPRIRSFATGQIHRPLLPYSKQQLYDYAKARQVV 164
Query: 258 WVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W ED TN ++RN++R L +L ++ +QA + + + ++++V S +
Sbjct: 165 WHEDETNAGTKYLRNQMRHRLLPLLAELRPGYEEATVQAAMVRYEQKQEHLKYVTS-YVK 223
Query: 314 EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 345
E +T D+G + ++ L P+ + L L
Sbjct: 224 EQMT--DRGLPLEAIQKL-PTDFRRLVLRALL 252
>gi|254994427|ref|ZP_05276617.1| hypothetical protein LmonocytoFSL_16702 [Listeria monocytogenes FSL
J2-064]
Length = 153
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL +N N E I ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLALLHFL-------WNSNLVPKEAIS---VAHINHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + +I L +AHHA
Sbjct: 73 EAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAG 223
DDQ E ++RL R S +G +G
Sbjct: 132 DDQIETILMRLVRGSASIGWSG 153
>gi|148378008|ref|YP_001256884.1| hypothetical protein MAG_7460 [Mycoplasma agalactiae PG2]
gi|148292054|emb|CAL59446.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
Length = 286
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 52/217 (23%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I LG+SGGPDSM L L + ++ ++ TV++ +R++S + IV
Sbjct: 2 ILLGISGGPDSMYLLDLISSQRSD--------------IVVATVNYNVRQDSAYDVEIVR 47
Query: 145 HRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
D GI I C +D + +G+ ++ AR+ R+ F+K+ ++ L +AHH DD
Sbjct: 48 KFCEDKGI---IFECLEIDQKACFKGNFEKWAREQRFAFFKKIYEKYNCEALYLAHHKDD 104
Query: 204 QAELFILRL--SRNSGVLG---------------LAGMAFSSQIFSSYAYSCHDDLKNHS 246
E + ++ R G L G F ++I + L N
Sbjct: 105 FLESYFMQKESKRQPDFFGIKTENYIYGMKVVRPLVGKVFKNEILEA--------LHNKK 156
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283
I + D TN P++ RNRIR+ L LS+
Sbjct: 157 I---------KYANDYTNDLPIYTRNRIRIWLKSLSN 184
>gi|429749461|ref|ZP_19282583.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429168114|gb|EKY09966.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 418
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIG 193
ES + V + +G+ E+VR + G + Q AAR++RYR F ++ +H
Sbjct: 41 ESDADEAFVRQYAATLGVALEVVRFNTKQYAKDCGLNTQLAARELRYRWFAEMAKKHHCS 100
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQ 252
+ AHHA+D E FI+ LSR SG+ GL G+ ++Q+ + ++ IL Q
Sbjct: 101 AIATAHHANDNIETFIINLSRGSGLDGLLGIPQQTAQLVRPLLH-----MQREEILSYAQ 155
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
W ED +N + +VRNRIR
Sbjct: 156 QHGLQWREDSSNHTDKYVRNRIR 178
>gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
Length = 461
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 21/276 (7%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ D+ + E+F ++ + L + + VSGGPDS+AL + A + +
Sbjct: 2 MDDLIRKVESFCKKENL--LDRQDTVIVAVSGGPDSIALLHILAALQD----------RW 49
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDM 178
L+A V+HGLR + EE V + +G R D KQG ++ A R+
Sbjct: 50 SLHLVAAYVNHGLRAAAFEEEVFVESQARAVGAEFYCRRIDAAAIAEKQGLSIETAGRNE 109
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY F ++ + + + HH DDQAE ++ L R GV G M + + C
Sbjct: 110 RYAFFSELAEKTGAVRIAVGHHEDDQAETVLMHLLRGGGVSGAGAMKAKNGLIIR-PLLC 168
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVIS 295
+ IL N W D +N S ++RNRIR M L + + L S
Sbjct: 169 ---VPRQDILTALNEVNLPWRVDESNESREYLRNRIRHDIMPLLKNINPQVTAALNRFAS 225
Query: 296 ACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 331
R+ Y+E+ + A ++G+ +D+ IL
Sbjct: 226 ISRQENMYMENEAVKQLKLAERRNERGF-YLDIPIL 260
>gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Coprococcus catus GD/7]
Length = 476
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 23/238 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE-EANIV 143
+ +GVSGG DS+ L + + Q L A+ + HGLR E+ + + + V
Sbjct: 26 VVVGVSGGADSVCLLSVLKNLQMSMALQ----------LTAVHIHHGLRGEAADRDRDFV 75
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ DM I C + D + K+ HL +EA R RY F++V + Q + +AHH
Sbjct: 76 TALCEDMQIPCVCFQAD-IRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHR 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQ-IFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
DD AE +L L R SG+ GL+G+ I D++ + L QG + +
Sbjct: 135 DDLAETVLLNLFRGSGLKGLSGIPMMRGCIVRPLLGVGRADIEAY---LGRQGMS--YRN 189
Query: 261 DPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
D TN + RNRIR+ D+ + QA +S T + +C + N+A +
Sbjct: 190 DATNFETEYTRNRIRL---DILPYVTEHINQAAVSHIAETAAIASDICRYVENQAAAI 244
>gi|433654024|ref|YP_007297732.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292213|gb|AGB18035.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 463
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 38/297 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANIV 143
I +GVSGGPDS+ L L + +K ++ L + V+H LR ++ +A+ V
Sbjct: 21 IVVGVSGGPDSICLINLLSEFKE----------KYDLRLYVVHVNHMLRGIDADNDASFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHAD 202
MGI + + D ++G +EAA R++RY+ F ++ + + +AH+ +
Sbjct: 71 EDVCRGMGIPFFLFKEDVRKYALEKGLSEEAAGREVRYKAFHEIFEKVNADKIAVAHNKN 130
Query: 203 DQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
D AE +L + R +G GL G+ + I + D+ IL + N +V D
Sbjct: 131 DVAETILLNILRGAGTAGLIGIKPVNGNIIRPLIRTTRDE-----ILDYLKSKNIKFVVD 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT-------RSYVEHVCSNLINE 314
TN+ ++ RNRIR+ L +F + ++ RT Y+ C + +
Sbjct: 186 ATNKEDVYRRNRIRLKLIPFIEENFSID---IVENLYRTSQIILDDEDYLNEECEKIF-K 241
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
+++ ++ ++D++ + K+ D +L + I + +RG T++L ++
Sbjct: 242 KISIFNKESVMVDIDEI--KKLHD-------SLKKRLIRMAYKAIRGDTNELTYKHV 289
>gi|377556165|ref|ZP_09785886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gastricus PS3]
gi|376168719|gb|EHS87454.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gastricus PS3]
Length = 450
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKV 186
V+H LR +S +EA + D I +I DW + P +G ++EAAR RYR F +V
Sbjct: 51 VNHHLRTQSDQEAQFLVQYCRDHHIAIQI--ADWHVADHPDKG-VEEAARQFRYRFFYQV 107
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q +LL AHH +D AE +++L R + + G+ + + + +
Sbjct: 108 MDKEQSRILLTAHHQNDLAETVLMKLVRGGWLKSIVGLQTARTFNTGWLLRPWLQISKEE 167
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
IL Q W ED +N+S + RNR R +
Sbjct: 168 ILRQAQVIGLTWYEDQSNQSMVIQRNRFRHQI 199
>gi|409998314|ref|YP_006752715.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei W56]
gi|406359326|emb|CCK23596.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei W56]
Length = 283
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 16 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 62
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 63 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 117
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 118 MTAHHADDQLETILFRLARSGDPAALIGIRADRAWHGRRLVRPLLPYSKAMIRSYA---- 173
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 174 ---DQHNVRF-C--------EDSSNADPHYARNQLR 197
>gi|374294610|ref|YP_005044801.1| tRNA(Ile)-lysidine synthetase [Clostridium clariflavum DSM 19732]
gi|359824104|gb|AEV66877.1| tRNA(Ile)-lysidine synthetase [Clostridium clariflavum DSM 19732]
Length = 468
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS +C+L W + L+A+ ++H LR +ES + V
Sbjct: 21 IVVGVSGGPDS--ICLLHVLWSL--------RNDLNLKLVAVHINHMLRGDESYRDEEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ + +R D ++G L+EA R+ RYR F+ V + +AH+ +
Sbjct: 71 KSFCKKLGVELKSIRVDINKAARQKGMSLEEAGREERYRNFEMVADSIGADKIAVAHNKN 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAF-SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DQAE ++ + R +G+ GL GM + +I D++ I + V D
Sbjct: 131 DQAETVLMNIIRGTGLDGLKGMDYIRGRIVRPLL-----DIERSEIEAYILEKKLETVID 185
Query: 262 PTNRSPLFVRNRIRM----SLGDLSSCSF 286
+N ++ RN+IR+ S+ +L CS
Sbjct: 186 SSNLEKIYARNKIRLDVIPSIDNLFDCSL 214
>gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
Length = 342
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P L VSGGPDS AL + AG D TVDH LR S +E
Sbjct: 22 EPARPALLAVSGGPDSTAL-----------MHAAARAGR--DLFRVATVDHALRPGSADE 68
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V +++G+ I+ D P+ G +Q +AR RYRL + G++L A
Sbjct: 69 ARAVGRLATELGLIHTILTWDA----PRHGSRIQASARGARYRLLTDHAARIGAGLILTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM 224
H DDQAE ++RL SG GLAGM
Sbjct: 125 HTLDDQAETVLMRLIAGSGPSGLAGM 150
>gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
gi|61216595|sp|Q7UNE1.1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
Length = 397
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 87 LGVSGGPDSMAL-CVLTAGW--KTGGFNQNGEA-GEFIDGLLAITVDHGLR-EESKEEAN 141
+G SGG DS+AL C+L W ++ G N E + + L+ +HGLR EES +
Sbjct: 41 VGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADEA 100
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + + I L+ G + + R +R F++ QH + +AH
Sbjct: 101 FVRQICDQLQLPLVIHHVPPLNNSATSGPVSDERTLRQIRRDFFERAAKQHGCRYVAVAH 160
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD-- 257
ADDQAE + R +G LGLAG+A +S++ + D + +L + + RD
Sbjct: 161 SADDQAETMLHHFIRGTGPLGLAGIAEASELDT-------DIVVRRPLLQVRRDTLRDGL 213
Query: 258 ------WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 296
W ED +NR ++ RN IR + L + + ++A+ A
Sbjct: 214 REIGQPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA 258
>gi|319891462|ref|YP_004148337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
HKU10-03]
gi|317161158|gb|ADV04701.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
HKU10-03]
Length = 429
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VS G DSM L +T + Q L + V HGLRE S++EA +
Sbjct: 11 IVVAVSTGIDSMVLLHQLLYDETLTYRQ----------LTCLHVHHGLREASEQEATFIQ 60
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H I + R D D + +Q AR+MRY+ F + Q LL AHH DDQ
Sbjct: 61 HYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN---HSILLICQGGNRDWVED 261
E RL GM S I + Y + L N H I Q + + ED
Sbjct: 121 VETIFYRLFTGKSTRSSLGM---STIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177
Query: 262 PTNRSPLFVRNRIR 275
+N + +VRN IR
Sbjct: 178 TSNANNTYVRNDIR 191
>gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
Length = 328
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 19/235 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+AL A + G + L+A+ VDH LR+ES +A V+
Sbjct: 22 VMVAVSGGADSVALLRSLAAIRESGPGR----------LIAVHVDHNLRKESDTDAQFVA 71
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI + R D+ P ++ AAR RY + + H ++ AH ADDQ
Sbjct: 72 QLAQQLGIEGILGRVDFELSGPDG--IEAAARSARYGFLRTFAMDHGARYVVTAHTADDQ 129
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQI-FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
E + R+ R + + GL+G+ + ++ ++ + + + D T
Sbjct: 130 IETVLHRILRGTSLAGLSGIPRARELELGISLLRPMLSIRRSEVEAYLADLGQTFRHDET 189
Query: 264 NRSPLFVRNRIRMSLGDLSSCSF-----KSELQAVISACRRTRSYVEHVCSNLIN 313
N F RNR+R L L ++ +S L+ I A R YVE S L++
Sbjct: 190 NDESRFFRNRLRNDLLPLLRDAYLPQVDQSLLRLAIGAA-ECREYVETQASQLLD 243
>gi|315924895|ref|ZP_07921112.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621794|gb|EFV01758.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 486
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 17/213 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+P R+ +GVSGG DSMAL W A ++A V+H +R E+ E
Sbjct: 33 FEPGDRVIVGVSGGIDSMALLHFL--WT--------HADALGIAVMAGHVNHRIRGEAAE 82
Query: 139 -EANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ V+ +D GI D L + ++ L+ A R R R F++ Q +
Sbjct: 83 GDQTFVTQWCADHGIPALTAAADVPLTAKERKISLETAGRLARRRCFERWQRQTGAAKIA 142
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHH DDQAE ++ L R +G+ G AGM + F ++ +I
Sbjct: 143 LAHHLDDQAETVLMHLIRGAGIRGAAGMRPVAGAFVRPFLQ----VRREAIEAYAAAQQL 198
Query: 257 DWVEDPTNRSPLFVRNRIRMS-LGDLSSCSFKS 288
VED TN S F+RNR+R + L++C+ ++
Sbjct: 199 PHVEDATNASDAFMRNRLRHQVMPVLTACNARA 231
>gi|225573962|ref|ZP_03782607.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM
10507]
gi|225038779|gb|EEG49025.1| tRNA(Ile)-lysidine synthetase [Blautia hydrogenotrophica DSM 10507]
Length = 468
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 79 LKPHH------RIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHG 131
++ HH RI G+SGG DSMAL L ++ G+ + A+ V+HG
Sbjct: 16 IQKHHMLEAGDRIVAGISGGGDSMALLFLLLKFRERCGYE-----------VCAVHVNHG 64
Query: 132 LR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQ 189
+R +E+ + +V+ +D + CE+ C + K G +EA R +R + +++V Q
Sbjct: 65 IRGDEAFRDETLVTKYCADRNVDCEVFHCSVPEAVKKYGWSEEEAGRILRRQAYEQVLRQ 124
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
+ + +AHH +DQAE + LSR G+ G+ GM Q + C ++ I
Sbjct: 125 WKGNKVALAHHQNDQAETMLHNLSRGCGLRGIRGM-LPVQNGMIRPFLC---IERREIDH 180
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + D TN S ++RNRIR
Sbjct: 181 YLKEKKIPYRTDSTNFSDQYIRNRIR 206
>gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
Length = 432
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 78/199 (39%), Gaps = 10/199 (5%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
G I L VS G DSM L L E L I ++HGLR+ S
Sbjct: 6 TGWSEQDHIVLAVSTGIDSMCLLHLLLN----------EYQHTYSKLTCIHINHGLRQAS 55
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EE + GI I R D + +Q +R RY F + Q VLL
Sbjct: 56 IEEEAFFKTYCEEHGIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLL 115
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DDQ E RL G+A++SQ S D+ +I N
Sbjct: 116 TAHHRDDQIETIFYRLFTGRFTRSHLGIAYTSQRVSYQLVRPMLDISKATIKSYQNQYNV 175
Query: 257 DWVEDPTNRSPLFVRNRIR 275
+ ED +N + ++VRN IR
Sbjct: 176 PFFEDVSNHNNVYVRNDIR 194
>gi|343520169|ref|ZP_08757138.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397127|gb|EGV09661.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 396
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L +SGG DSM + L +K E L+ +H LR+++ + V
Sbjct: 18 RILLAISGGKDSMTMLDLFNAFK----------DELKLNLVVCHFNHSLRDDADRDETFV 67
Query: 144 SHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ G++ + D L + ++E AR +RY+ F ++ + + AH+ +
Sbjct: 68 KSQCEKYGLKFYSKKEDVLLFSNENKLSIEEGARTLRYKFFDQIKRIENLDYIATAHNKN 127
Query: 203 DQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
D AE I+R+ R +G+ GL G+ + + D+++N+ + +VED
Sbjct: 128 DLAETVIMRILRGTGINGLIGIQSERGDLIRPILDFSRDEIENY-----IKENQIPFVED 182
Query: 262 PTNRSPLFVRNRIRMSL 278
TN +++RN+IR++L
Sbjct: 183 KTNFEDMYLRNKIRLNL 199
>gi|395010951|ref|ZP_10394255.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Acidovorax sp. CF316]
gi|394310950|gb|EJE48381.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Acidovorax sp. CF316]
Length = 322
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
MT+ EA A+ P +A+G+SGG DS AL + A G
Sbjct: 1 MTQTFEA-----AITAFAPALPLAVGLSGGADSTALLLACARRWPGQVR----------- 44
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYR 181
AI V HGL+ + + + + + + R +D RP+ G E AAR RY
Sbjct: 45 --AIHVHHGLQAAADGFEQHCAALCTRLQVPLVVQR---IDARPEPGQSPEDAARQGRYA 99
Query: 182 LFQKVCIQHQIG---VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
+ + +A HADDQ E +L LSR +GV GLA M Q +
Sbjct: 100 ALDAAVQAPAMAGTAAMALAQHADDQVETLLLALSRGAGVAGLASMPARWQRAGLPWHRP 159
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
+ ++ Q WVEDPTN + RNRIR + + +F +
Sbjct: 160 LLQVPGQAVRDWLQAQGERWVEDPTNADEHYTRNRIRAQILPVLEAAFPA 209
>gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
Length = 418
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 18/203 (8%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
M++AG K I L +S GPDSMAL + +Q L+ VDH LR
Sbjct: 1 MSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLR 46
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+S E+ I++ ++ E + W P G L+ AARD RY F K+ ++Q
Sbjct: 47 NDSYLESKIITKYCQQYQLQLEETK--WDAPHPANG-LEAAARDFRYDFFAKILRKYQAD 103
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQ 252
L AHH DD AE +++L R+ V + + + I +S +L+ +
Sbjct: 104 YLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAK 163
Query: 253 GGNRDWVEDPTNRSPLFVRNRIR 275
+V D TN+ +RNR+R
Sbjct: 164 KRKLAYVVDYTNQENETLRNRLR 186
>gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Faecalibacterium
prausnitzii L2-6]
Length = 488
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L +AL VSGG DSMAL L AGE L V+HGLR E+ +
Sbjct: 20 LDGKQHLALAVSGGADSMALLCLI----------RPLAGEKGIALTVCHVNHGLRGETAD 69
Query: 139 -EANIVSHRVSDMGIRCEIVRCDWLD---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ V + +G+ + L+ G+P+ G ++ AR +RY F++V + I
Sbjct: 70 RDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG--EDWARRLRYACFERV-LAEGIDA 126
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+ AH DQAE + RL+R +G+ G AG+ S + L +C+
Sbjct: 127 VATAHTGSDQAETLLFRLARGTGLHGAAGIRPSRPGYLRPLLC----LTRADTEAVCRAC 182
Query: 255 NRDWVEDPTNRSPLFVRNRIR 275
WV D TN + + RNR+R
Sbjct: 183 GEGWVTDETNDADDYARNRLR 203
>gi|303326966|ref|ZP_07357408.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
gi|302862954|gb|EFL85886.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
Length = 366
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 84 RIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L +SGG DS AL C+L + L A+TV+HGLR E+ +A
Sbjct: 36 RLVLALSGGADSTALACILHI-----------LSPRLKLDLFALTVNHGLRPEADADARC 84
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ +GI C D +G L+EA R RY L ++ Q +++ HH
Sbjct: 85 ARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQADFVVLGHHN 144
Query: 202 DDQAELFILRLSRNSGVLGLAGMAF---SSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
+D +E +LRL+R +G L GMA + ++ ++ L+ L+ Q G W
Sbjct: 145 EDLSEDVLLRLTRGTGWPALGGMAARDDTRRLLRPLLFTRPQALRE----LLRQCGI-VW 199
Query: 259 VEDPTNRSPLFVRNRIR 275
ED +N SP F RNR+R
Sbjct: 200 REDASNDSPAFTRNRLR 216
>gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 438
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 12 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 58
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 59 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 113
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 114 MTAHHADDQLETILFRLARSGDPAALIGIRADRTWHGRRLVRPLLPYSKAMIRSYA---- 169
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 170 ---DQHNVRF-C--------EDSSNADPHYARNQLR 193
>gi|452751555|ref|ZP_21951300.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium JLT2015]
gi|451960774|gb|EMD83185.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium JLT2015]
Length = 297
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 14/192 (7%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ VSGG DS+ + + A E D LL +TVDH LR S +A V
Sbjct: 1 MAVSGGGDSLGMLAMAAA-------------EMPDRLLILTVDHRLRTGSAADAAYVEAI 47
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+D G+ C + W + P + +AR RY KVC + + LL AHH DDQAE
Sbjct: 48 CADRGLACVRLDLQWAEDLPSA-NRAASARAARYAAMAKVCRERGVPYLLTAHHRDDQAE 106
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
++RL+R SG GL G+ + I S+ + + EDPTNR
Sbjct: 107 TILMRLARGSGAAGLRGIKARTCIAGLAVLRPVLGETRASLRAAAEAAGFEPREDPTNRD 166
Query: 267 PLFVRNRIRMSL 278
+ R R R L
Sbjct: 167 MAYDRPRFRALL 178
>gi|397906164|ref|ZP_10506988.1| tRNA(Ile)-lysidine synthetase [Caloramator australicus RC3]
gi|397160798|emb|CCJ34323.1| tRNA(Ile)-lysidine synthetase [Caloramator australicus RC3]
Length = 454
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 20/212 (9%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
+ +R +M +K +I +G SGGPDS AL + K+ FN + A+ ++
Sbjct: 8 YVKRYSM--IKDGDKIVVGFSGGPDSTALLHILIQLKSI-FNIE---------IFAVHIN 55
Query: 130 HGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVC 187
H +R EE+ + G+ R D L +G +EA R +RY F+KV
Sbjct: 56 HMIRDEEAFRDEEFARDFCKKFGVPFYSFRIDVLSLAKDKGLSSEEAGRLVRYECFEKVL 115
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHS 246
+ + +AH+ +DQAE I++ R SG+ G++G+ I ++++ +
Sbjct: 116 KEVGGNKIALAHNKNDQAETMIMKFLRGSGLRGISGIKPIRGNIIRPLLICSREEIEEY- 174
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
C + + V D TNR +++RN+IR+ L
Sbjct: 175 ----CNQNSLNPVIDSTNREAIYLRNKIRLEL 202
>gi|418011911|ref|ZP_12651659.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lc-10]
gi|410551410|gb|EKQ25473.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lc-10]
Length = 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRTWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|418006189|ref|ZP_12646150.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW1]
gi|418009043|ref|ZP_12648885.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW4]
gi|410544351|gb|EKQ18680.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW1]
gi|410544794|gb|EKQ19109.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW4]
Length = 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRAWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BL23]
gi|385821217|ref|YP_005857604.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
gi|385824410|ref|YP_005860752.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
casei BL23]
gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
Length = 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRAWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
Length = 436
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRAWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
gi|61216617|sp|Q822B9.1|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
Length = 317
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L +SGG DS+ L L K+ G A+ VDHG RE S EA + R
Sbjct: 27 LALSGGSDSLFLLYLL---KSRGV-----------AFTAVHVDHGWRESSYREAEELKIR 72
Query: 147 VSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ GI I V ++ R + AAR RY LF KVC + + + +AHHA+DQ
Sbjct: 73 CEEEGIPILIDHVPPEYRTSRDPEN----AARRYRYTLFHKVCKEQNLAGIFLAHHANDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
AE + RL + + L GM+ + + + I+ + N V+D TN
Sbjct: 129 AETVLKRLLEGASLSNLKGMSPKTSYEDIPLFRPLLHIPKQIIINVLDAENVPCVQDITN 188
Query: 265 RSPLFVRNRIRMSL 278
++R R+R +
Sbjct: 189 TDERYLRARMRKKI 202
>gi|406903924|gb|EKD45856.1| hypothetical protein ACD_69C00106G0005, partial [uncultured
bacterium]
Length = 466
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H + + SGG DS AL + A Q+ + + L AI V+H L +SK+ A
Sbjct: 22 HKKTFIAYSGGLDSHALLHIMAN-----LCQSKKDVK----LTAIHVNHNLSPKSKQWAK 72
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++G+ I + D + +E R +RY +F K+ ++ G +L AH A
Sbjct: 73 HCQKVCKNLGV-AYITKSIDADIKSDIHSPEEILRKLRYEIFAKILPEN--GCILTAHQA 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
+DQAE +L+L R +G GLA M + + +L IL Q WVED
Sbjct: 130 NDQAETLLLQLFRGAGPKGLAAMPEKIKFAQGFLARPLLNLSREEILQYAQKNKLKWVED 189
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 303
+N F RN IR L + K +++ R S+
Sbjct: 190 ESNVDTKFDRNLIRHKL----IPAIKKRWPGIVATLNRVASH 227
>gi|373495309|ref|ZP_09585895.1| hypothetical protein HMPREF0380_01533 [Eubacterium infirmum F0142]
gi|371965175|gb|EHO82676.1| hypothetical protein HMPREF0380_01533 [Eubacterium infirmum F0142]
Length = 486
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 52/286 (18%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
+ + I +G+SGG DS+ L C L+ L + ++HGLRE
Sbjct: 23 ISENEHIVIGLSGGADSLCLFDILCRLSDSMNLK--------------LYPVHINHGLRE 68
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+ E+ + +D I C + D + R K +EA R +RY F +V + G
Sbjct: 69 EACEDEKFCTKLCADKNIECRVYGFDCEEYAREKNISTEEAGRILRYTAFAEVFDEIAEG 128
Query: 194 -------VLLIAHHADDQAELFILRLSRNSGVLGLAGMAF------SSQIFSSYAYSCHD 240
+ +A +ADD+AE + R+ R +G GL G+ QI +
Sbjct: 129 GTPREKIKIAVAQNADDRAETVLFRIMRGTGTDGLVGIKHMRCDEQGRQIIRPLLDTYKS 188
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL----SSCSFKSELQAVISA 296
D+ + L QG N D TN ++ RNRIR+SL L + FK L + +
Sbjct: 189 DINEYCEL---QGLNPQI--DKTNFEEIYNRNRIRLSLIPLIEEKYNPEFKKALNRLALS 243
Query: 297 CRRTRSYVEH--------VCSNLINEAVTVMDQGYAVIDLEILNPS 334
R ++E+ + N EA ++ G +D+ L+PS
Sbjct: 244 AEEDRLFLENLACDELEKITKNFSKEANKIILSG---VDISELDPS 286
>gi|422417706|ref|ZP_16494661.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067]
gi|313635123|gb|EFS01457.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067]
Length = 648
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 23/202 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL---AITV---DHGLREESK 137
++ + VSGGPDS+AL F Q + L+ AI+V +HGLRE +
Sbjct: 23 KLLVAVSGGPDSLALL---------HFLQ-------MSNLVPKKAISVAHLNHGLRENAI 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+E IV + I I + Q ++E AR RY F+K+ + I L+
Sbjct: 67 KEQLIVRNYCEKHEIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +GM + A + I+
Sbjct: 127 LAHHADDQIETILMRLVRGSSSIGWSGMQPKRSMRGGQAIRPFLSITKAEIIDYANRHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N SP + RNR R +
Sbjct: 187 TYEIDESNSSPKYTRNRYRKEI 208
>gi|340620563|ref|YP_004739016.1| tRNA(Ile)-lysidine synthase [Zobellia galactanivorans]
gi|339735360|emb|CAZ98737.1| tRNA(Ile)-lysidine synthase [Zobellia galactanivorans]
Length = 435
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 33/238 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTG------GFNQNGEAGEFIDGLLAITVDHGLREESK 137
R L SGG DS+AL L A FN G + +GL+ K
Sbjct: 20 RFLLACSGGVDSVALLHLCARLDLDFAVAHCNFNLRGAESDADEGLVRDLA-------KK 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ I +R + + +Q AAR++RYR F ++ + I L+
Sbjct: 73 HKVKIYVNRFDTKSYSTQ-----------NKVSIQVAARELRYRWFSEIMDREGIKTLVT 121
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
AHHADD E F++ LSR +G+ GL G+ S S IL + N
Sbjct: 122 AHHADDSLETFLINLSRGTGIDGLTGIPVKSHNLSRPLLH----FTREWILSYARAENLV 177
Query: 258 WVEDPTNRSPLFVRNRIRM----SLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 311
W ED +N ++RN+IR +L +L+ +F + Q + +T +EH S+L
Sbjct: 178 WREDASNADTKYLRNKIRHEIVPALKELNP-AFLANFQKTQNYLSQTALVLEHHISDL 234
>gi|417997270|ref|ZP_12637529.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei M36]
gi|418014188|ref|ZP_12653799.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lpc-37]
gi|410533030|gb|EKQ07718.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei M36]
gi|410554365|gb|EKQ28342.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lpc-37]
Length = 436
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 88/216 (40%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L K + ++ T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV--KAADLD-----------VVVATFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRAWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|424864772|ref|ZP_18288675.1| tRNA(Ile)-lysidine synthase [SAR86 cluster bacterium SAR86B]
gi|400759518|gb|EJP73700.1| tRNA(Ile)-lysidine synthase [SAR86 cluster bacterium SAR86B]
Length = 318
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I +G+SGG DS+AL + A +K E+ + +I V+H + S
Sbjct: 16 KIYIGLSGGSDSIALLNIVASYKR----------EYNLDVTSIHVNHSTSQNSNMWQEFC 65
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
D+GI C + + K+G + AAR RY++F+ + ++ LL+AHHAD
Sbjct: 66 EQSSKDLGINCIVKKISI----EKKGQGFEAAARGERYKVFKDILSEND--QLLLAHHAD 119
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
D AE +LR+ R +G+ GL G + ++ ++ N +++ D
Sbjct: 120 DVAETLLLRIFRGTGIDGLQGPRRKRSLGKGNIIRPLLEISKKDLMAYLNDKNIEFINDE 179
Query: 263 TNRSPLFVRNRIR 275
+N + + RN IR
Sbjct: 180 SNNNSEYDRNYIR 192
>gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|417981712|ref|ZP_12622376.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei 12A]
gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|410521115|gb|EKP96080.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei 12A]
Length = 436
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRTWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang]
gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str.
Zhang]
Length = 436
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 52/216 (24%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG----------------MAFSSQIFSSYAYSCH 239
+ AHHADDQ E + RL+R+ L G + +S + SYA
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGIRADRTWHGRRLVRPLLPYSKAMIRSYA---- 167
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
H++ C ED +N P + RN++R
Sbjct: 168 ---DQHNVRF-C--------EDSSNADPHYARNQLR 191
>gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 459
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 38/297 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANIV 143
I +GVSGGPDS+ L L + +K +N L + V+H LR ++ +A+ V
Sbjct: 21 IVVGVSGGPDSICLINLLSEFKEK-YNLR---------LYVVHVNHMLRGIDADNDASFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHAD 202
MGI + + D ++G +EAA R++RY+ F ++ + + +AH+ +
Sbjct: 71 EGVCRGMGIPFFLFKEDVKKYALEKGLSEEAAGREVRYKAFHEIFEKVNADKIAVAHNKN 130
Query: 203 DQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
D AE +L + R +G GL G+ + I + D+ IL + N +V D
Sbjct: 131 DVAETILLNILRGAGTAGLIGIKPVNGNIIRPLIRTTRDE-----ILDYLKSKNIKFVVD 185
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT-------RSYVEHVCSNLINE 314
TN+ ++ RNRIR+ L +F + ++ RT Y+ C + +
Sbjct: 186 ATNKEDVYRRNRIRLKLIPFIEENFGID---IVENLYRTSQIILDDEDYLNEECEKIF-K 241
Query: 315 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 371
+++ ++ ++D++ + K+ D +L + I + +RG T++L ++
Sbjct: 242 KISIFNEESVMLDIDEI--KKLHD-------SLKKRLIRMAYKAIRGDTNELTYKHV 289
>gi|418400226|ref|ZP_12973769.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti CCNWSX0020]
gi|359505902|gb|EHK78421.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti CCNWSX0020]
Length = 453
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 84 RIALGVSGGPDSMALCVL----TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
RI + VSGG DSM L V A + GF+ L A TVDH LR +S E
Sbjct: 21 RILVAVSGGSDSMGLLVALHSAIAADERRGFS-----------LAACTVDHALRPQSARE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + +GI I C W +P G +Q AAR+ RY L + + H
Sbjct: 70 AEDVAAFCAALGIAHRI--CRWEGAKPSTG-IQAAARNKRYELLAEAADALGADCIATGH 126
Query: 200 HADDQAELFILRLSRNSG-------------VLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
DDQ E +R++R G A M + +I+ + L
Sbjct: 127 TRDDQQETVAMRIARGKGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFL---GLARAE 183
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
I Q W +DP+N +P F R R+R +
Sbjct: 184 IRSFLQARGVSWFDDPSNANPAFERVRVRAQI 215
>gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella morbillorum M424]
gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella morbillorum M424]
Length = 446
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 27/214 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+AL +SGG DS+ L L + + L+ ++HGLR+ES EEA V
Sbjct: 20 RLALALSGGVDSIVLFHLLVTKYRHTYKE----------LVVFHINHGLRKESYEEAEFV 69
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA--ARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS+ IR + ++ + H+ E AR +RY+ F ++ + I +L AHH
Sbjct: 70 EKFVSNYDIRFYKKELE-MNSLARDKHISEEMLARKLRYKAFNEMAAKENITKILTAHHK 128
Query: 202 DDQAELFILR-LSRNSGVLGLA----GMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+DQ E ++R L+ S LA G + I+ + L+ ++ Q N
Sbjct: 129 NDQVENILMRLLTGRSMDYNLAIDNKGRHGNLTIYRPLLNVLKETLEQYA-----QENNL 183
Query: 257 DWVEDPTNRSPLFVRNRIRMS----LGDLSSCSF 286
+ D +N + RN IR + L D+S+ SF
Sbjct: 184 KYYTDESNFDTDYTRNNIRHNIIPLLNDVSTVSF 217
>gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
gi|167659086|gb|EDS03216.1| tRNA(Ile)-lysidine synthetase [Alistipes putredinis DSM 17216]
Length = 448
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVL--TAGWKTGGFNQNGEAGEFIDGLLA 125
+ + RR +A P I L VSGG DSM + L +G++ G + N + + G+
Sbjct: 8 QRYIRRNELAA--PEDFILLTVSGGVDSMVMLSLFVRSGYRVGVAHCNFQ----LRGV-- 59
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQ 184
ES+E+ +V G+ R D + G ++ AAR +RY F
Sbjct: 60 ---------ESEEDEELVRREAEKYGVPWYNKRFDTKGEMERTGESMEMAARRLRYAWFD 110
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLK 243
++ +H V+ IAHH DD E F + L R +G+ GL G+ + ++ ++ D+
Sbjct: 111 ELSREHGYTVVAIAHHIDDSIETFFINLLRGTGLRGLTGITTHAGKLIRPLMFASRKDIL 170
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+++ + + ED +NRS ++RN+IR+ L
Sbjct: 171 EYAV-----AQHIPYREDSSNRSTKYLRNKIRLGL 200
>gi|431805699|ref|YP_007232600.1| tRNA(Ile)-lysidine synthetase [Liberibacter crescens BT-1]
gi|430799674|gb|AGA64345.1| tRNA(Ile)-lysidine synthetase [Liberibacter crescens BT-1]
Length = 431
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 19/259 (7%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
+ P I + VSGG DS+ L V +G N E L A+T++HGLR+E+
Sbjct: 16 NIMPPLHILVAVSGGSDSVGLLVALHSVLSG--NSFKEIK-----LSAVTINHGLRKEAH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA VS ++ I +V W + +P G L AAR+ RY+L + ++++
Sbjct: 69 NEALYVSGLCYELNIAHRVVV--WKEAKPHSG-LMVAAREARYKLLSEYASSIGASLVVV 125
Query: 198 AHHADDQAELFILRLSRN--SGVLGLAGMAFSSQIFSSYAYSCHDDLK--NHSILLICQG 253
H DDQ E +R +R+ +GLAG+ +++ + C LK SI +
Sbjct: 126 GHTFDDQLETVRMRSTRDLLGEGIGLAGIC-DIMLYNMSLWVCRPFLKCRRESIRSFLKE 184
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
W D +N F R R R+S + S + I + +R ++ C+NL+
Sbjct: 185 KGIIWCNDSSNFDSKFERVRFRLSYSEES----LDMISKRIDIAQYSRIFLGEQCANLVT 240
Query: 314 EAVTVMDQGYAVIDLEILN 332
+ + V + I E+ +
Sbjct: 241 KYLRVHLKSVISISREVFS 259
>gi|407797385|ref|ZP_11144328.1| tRNA(Ile)-lysidine synthetase [Salimicrobium sp. MJ3]
gi|407018268|gb|EKE30997.1| tRNA(Ile)-lysidine synthetase [Salimicrobium sp. MJ3]
Length = 466
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 15/219 (6%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
DM K + F +R + +K I +SGGPDS+AL + K
Sbjct: 5 DMKKV-DTFVQRHGL--IKEGDTIVAAISGGPDSLALLHYLSELKQS----------LSL 51
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMR 179
++ ++DHGLR EES+E+ V+ + + E + D K QEAAR +R
Sbjct: 52 TVIPASIDHGLRGEESREDVAYVAEICERLHLPVEKITLDVGSYMKKNSMGTQEAARILR 111
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ +V ++ L + HH DDQ E ++L+R + G+ GM + +
Sbjct: 112 YKALAEVMYTYEADSLALGHHGDDQVETLFMQLTRGASPSGVTGMPVTRKFAGGQIIRPL 171
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+++ + C+ DP+N ++ RN R L
Sbjct: 172 LEMRKEELEDYCRDAGLSPRYDPSNEETVYTRNAFRHRL 210
>gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
Length = 462
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 87/209 (41%), Gaps = 46/209 (22%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VS G DSM L L Q ++ V+H LR++S+EE +
Sbjct: 22 RVVVAVSTGVDSMVLLALLQELPASLRPQ----------IIVAHVNHRLRKQSEEEEQFI 71
Query: 144 SHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
D R ++V W L P+ G ++EAAR MRY F +V Q +LL AHH +
Sbjct: 72 RDYCEDH--RLKLVVHHWPLTEHPQNG-IEEAARKMRYCFFAQVMKDEQATILLTAHHQN 128
Query: 203 DQAELFILRLSRN----------------SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
D AE +++L+R SG L + F Q YA + H LK
Sbjct: 129 DLAETMLMKLTRGGQLHQLIGIEEKRPFASGTLERPLLNFPKQRLREYAVNNH--LK--- 183
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
W ED TNR RNR R
Sbjct: 184 -----------WYEDLTNRELTVSRNRFR 201
>gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21]
gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21]
Length = 325
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 124/302 (41%), Gaps = 46/302 (15%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ ++R+ +R + L ++ + SGGPDS+AL +L G
Sbjct: 8 VERFRQDLAR---VWTLDEGEKMGIAFSGGPDSLALLLLAVEALPGSVE----------- 53
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
A TVDHGLR ES EEA + +G+ E + G++Q AR RY
Sbjct: 54 --AATVDHGLRAESAEEARNAARICEALGMPHETLSVTI-----PHGNVQAEARHARYEA 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS--------- 233
+ + + + AHHADDQAE F++R +R+SG+ GLA + ++ +
Sbjct: 107 LAEWAERRSLDYIATAHHADDQAETFLMRANRSSGLSGLAAVRAATSLGEGDLIVLRPLL 166
Query: 234 -YAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 292
+ S +D+ S + DP+N F R R+R L ++ +++
Sbjct: 167 PWRRSALEDIARDSGFPVAA--------DPSNLDESFDRVRMRKGLAEVDFI----DVEG 214
Query: 293 VISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFI 352
+ + R + + + E V D+ A P + FLA V++
Sbjct: 215 LAGSARYLAEMQDDIDGMALEEWVRAKDEDGAP---HRYRPFARSGVDRPVFLAEVVKLF 271
Query: 353 CQ 354
C+
Sbjct: 272 CE 273
>gi|345890907|ref|ZP_08841769.1| hypothetical protein HMPREF1022_00429 [Desulfovibrio sp.
6_1_46AFAA]
gi|345048839|gb|EGW52661.1| hypothetical protein HMPREF1022_00429 [Desulfovibrio sp.
6_1_46AFAA]
Length = 366
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 84 RIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L +SGG DS AL C+L + L A+TV+HGLR E+ +A
Sbjct: 36 RLVLALSGGADSTALACILHI-----------LSPRLKLDLFALTVNHGLRPEAGADARC 84
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ +GI C D +G L+EA R RY L ++ Q +++ HH
Sbjct: 85 ARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQADFVVLGHHN 144
Query: 202 DDQAELFILRLSRNSGVLGLAGMAF---SSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
+D +E +LRL+R +G L GMA + ++ ++ L+ L+ Q G W
Sbjct: 145 EDLSEDVLLRLTRGTGWPALGGMAARDDTRRLLRPLLFTRPQALRE----LLRQCGI-VW 199
Query: 259 VEDPTNRSPLFVRNRIR 275
ED +N SP F RNR+R
Sbjct: 200 REDASNDSPAFTRNRLR 216
>gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
Jelinkova 176]
gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
Jelinkova 176]
Length = 427
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 35/216 (16%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
Y + ++ + A K H ++ + VSGG DSM L +K +D +A
Sbjct: 3 YSKIYTYCLQKAFFKNHKKVLIAVSGGVDSMNLLHFLHTFKRQ-----------LDISIA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
I V+H R+ES+ E + + I I D+ G ++ ARD RY+ F+
Sbjct: 52 IAHVNHKQRKESELEEDYLKKWAEQHDIPIFI---DYFKG----NFSEQRARDFRYQFFK 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA----FS-SQIFSSYAYSCH 239
++ +Q L+ AHHADDQ E +RL R S + LAG+ FS Q+ + +
Sbjct: 105 RIMVQGDYTALVTAHHADDQVETVFMRLIRGSLLRYLAGIKEVQPFSGGQLIRPFLHFHK 164
Query: 240 DDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+DL N ED +N + RNR+R
Sbjct: 165 NDLPNPY-----------HFEDSSNLGLDYFRNRVR 189
>gi|300172734|ref|YP_003771899.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
gi|299887112|emb|CBL91080.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
Length = 435
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANIV 143
+ + VSGG DS+ L + + D L + V++ LREES + V
Sbjct: 18 VIVAVSGGVDSVVLL-------------HTLRQQLPDAKLVVAHVNYHLREESDADEKFV 64
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
H E + WL+ P +++ ARD RY+ F+++ ++ +++AHHADD
Sbjct: 65 HHLADKYHAIFE--QTAWLNV-PDIA-VEKQARDFRYQFFEQLASKYHTTTVVVAHHADD 120
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +L+L R ++ LAGM+ ++ + C + ++ Q N +W ED T
Sbjct: 121 QAETVLLKLIRGGQLMQLAGMSQQNRRIVR-PFLC---ITKQELVSYAQKHNLNWHEDKT 176
Query: 264 NRSPLFV-RNRIR 275
N ++ RN +R
Sbjct: 177 NHDAMYTPRNFLR 189
>gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 326
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM +P + + SGG DS AL V A ++ ++AI V+HGL+
Sbjct: 8 AMRAFEPALPLGVAYSGGADSSALLVACAR-------------QWPGQVVAIHVNHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLF----QKVCI 188
+ + S +GI E V + G+ + +AAR RY+ F Q C
Sbjct: 55 AAADFEAHCRSVCSRLGIPLHVEAVHAHAVPGQSPE----DAARIARYKAFDALAQMECA 110
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ-----IFSSYAYSCHDDLK 243
I + IA HADDQ E +L L R +G+ GL+GM Q F D LK
Sbjct: 111 GVAIKSIAIAQHADDQVETMLLALGRGAGLAGLSGMPAQWQRGKVHFFRPLLQVAGDALK 170
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ N WV DPTN + RN IR L
Sbjct: 171 RWLV-----ANNEPWVSDPTNADHRYTRNHIRSEL 200
>gi|418964265|ref|ZP_13516082.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383341301|gb|EID19562.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 425
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L ++ E E I+ LA
Sbjct: 4 QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKYR--------EKLE-IEIYLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HG+REES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HVNHGVREESDFEEEKLKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q L+ AHHADDQAE +R+ R S ++ ++GM Q F++
Sbjct: 107 MKEEQCTALVTAHHADDQAETIFMRILRGSRLVHISGMK-EKQKFAN----------GEL 155
Query: 247 ILLICQGGNRDW-----VEDPTNRSPLFVRNRIR 275
I + D+ ED TN+ ++RNRIR
Sbjct: 156 IRPLLSFQKSDFPPIFHFEDWTNQENHYLRNRIR 189
>gi|383782975|ref|YP_005467542.1| hypothetical protein AMIS_78060 [Actinoplanes missouriensis 431]
gi|381376208|dbj|BAL93026.1| hypothetical protein AMIS_78060 [Actinoplanes missouriensis 431]
Length = 329
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+TVDHGL+E S A V+ D G +R E V L G P + AAR RY
Sbjct: 60 VTVDHGLQEGSDRRARSVAAWARDAGFDPVRIETVSVAGLPGGP-----EAAARTARYEA 114
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ +L+ H DDQAE +L L+R +G GL+GM +F D+
Sbjct: 115 LSAAATELGAAAVLLGHTRDDQAETVLLALARGAGPRGLSGMPGRRGVFRRPML----DV 170
Query: 243 KNHSILLICQG-GNRDWVEDPTNRSPLFVRNRIRMSL 278
C G W EDP N P + R+R+R S+
Sbjct: 171 ARADTRKACAALGLAPW-EDPHNSDPAYARSRVRASV 206
>gi|327402415|ref|YP_004343253.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
gi|327317923|gb|AEA42415.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
Length = 415
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 128 VDHGLREE-SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
+++ LREE S+++ V + E++ C + K ++QEAAR+ R+ FQ+
Sbjct: 47 INYQLREEDSEKDEEFVRDLAKKYELEIEVIHCPKEITKGKGINIQEAARNFRHAHFQQF 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNH 245
++ +L+AHH DDQ E F L+L R SG+ GL GM A I + ++L++
Sbjct: 107 IHENSANRILLAHHQDDQIETFFLQLLRGSGIFGLGGMHAERKGIIRPFLSLTKEELRDF 166
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
++ Q W ED +N+ + RN+ R
Sbjct: 167 ALENKLQ-----WREDWSNQENKYKRNQFR 191
>gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
Length = 425
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 114/255 (44%), Gaps = 39/255 (15%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L W + + E I+ LA
Sbjct: 4 QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLL----DW-LYKYRKKLE----IEIYLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HG+REES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HVNHGVREESDFEEEKLKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
++ L+ AHHADDQAE +R+ R S + ++GM Q F+ N
Sbjct: 107 MLEENCTALVTAHHADDQAETIFMRILRGSRLFHISGMK-EKQKFA-----------NGE 154
Query: 247 I---LLICQGGNRDWV---EDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISAC 297
+ LL Q N + ED TN+ ++RNRIR L + + F+ L + +
Sbjct: 155 LIRPLLSFQKSNFPPIFHFEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKHLIELGTEI 214
Query: 298 RRTRSYVEHVCSNLI 312
+ + + ++ N++
Sbjct: 215 SQMQDALAYLTKNIV 229
>gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147]
Length = 491
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A++ L RIAL SGG DS L L A + G + +A+ V HGL
Sbjct: 19 VALSALPDDARIALAYSGGLDSTVL--LHAAARIAGAER----------CVALHVHHGLS 66
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +G+R + D + QG ++ +ARD RYR + +C +H
Sbjct: 67 PNADAWLAHCAETADALGVRFDAAHVD-VPRASGQG-VEASARDARYRALETMCARHGAR 124
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI--- 250
L +A HADDQAE +L+L R +G+ GLA MA Y + D ++ +L +
Sbjct: 125 ALWLAQHADDQAETVLLQLLRGAGIAGLAAMA------PQYRPASTDVVRMRPLLHLLRA 178
Query: 251 -----CQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
Q W++D +N + + RN +R+ +
Sbjct: 179 QLERYAQQHALRWIDDESNANTRYARNALRVDV 211
>gi|398355014|ref|YP_006400478.1| tRNA(Ile)-lysidine synthase TilS [Sinorhizobium fredii USDA 257]
gi|390130340|gb|AFL53721.1| tRNA(Ile)-lysidine synthase TilS [Sinorhizobium fredii USDA 257]
Length = 445
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 110/249 (44%), Gaps = 27/249 (10%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAIT 127
A +RR + +KP RI + +SGG DS L V + EA EF L+A T
Sbjct: 7 AAARRFLSSFIKPS-RILVAISGGSDSKGLLV--------ALHAALEATEFNGFSLVACT 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR +S +EA V + +GI I C W +P G +Q AAR RY L
Sbjct: 58 VDHALRPQSADEAVAVGAFCAGLGIPHRI--CRWQGDKPLAG-IQAAARRSRYGLLADAA 114
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL-----AGMAFSSQIF--SSYAYSCHD 240
++ H DDQ E +R +R G A M + +I+ + Y
Sbjct: 115 AFFGADCIVTGHTRDDQNETITMRGARGQGQGQGSAGMAAAMLYGRRIWVLRPFLYVGRA 174
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLG--DLSSCSFKSELQAVISACR 298
D++ L +G W++DP+N +P+F R R+R SL + S + Q S+ R
Sbjct: 175 DIRA---FLEARGIG--WLDDPSNENPVFERVRVRASLAVSGFAPASKRGGSQRASSSIR 229
Query: 299 RTRSYVEHV 307
EH+
Sbjct: 230 AATLLAEHL 238
>gi|357419778|ref|YP_004932770.1| tRNA(Ile)-lysidine synthetase [Thermovirga lienii DSM 17291]
gi|355397244|gb|AER66673.1| tRNA(Ile)-lysidine synthetase [Thermovirga lienii DSM 17291]
Length = 467
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 37/250 (14%)
Query: 80 KPHHRIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-SK 137
+P ++ + VSGG DS+AL +L W D L+ VDHG+R+E SK
Sbjct: 27 EPCGKMVVAVSGGSDSVALLWLLCQVWDK-------------DKLVVAHVDHGIRKETSK 73
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+A V + G+ +++ + K ++ AAR +RY F+K +G I
Sbjct: 74 RDALFVRNLAESWGLNIALLQVEVPKLCKKGESIEVAARRIRYDFFEKTA--KSVGARWI 131
Query: 198 A--HHADDQAELFILRLSRNSGVLGLAGM-----AFSSQIFSSYAYSCHDDLKNHSILLI 250
A H A+DQAE + + R G+ GLAG+ I Y + L++ I
Sbjct: 132 ALGHTANDQAETVLHNIIRGCGIKGLAGIPERRGKIVRPIIDFYRKELMELLRSKGI--- 188
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 310
+WV D TN ++ RN+IR++L +F + + S + +N
Sbjct: 189 ------EWVSDETNDETIYTRNKIRLNLIPYIERNFNKQFVKHLLGI----SEIARPLAN 238
Query: 311 LINEAVTVMD 320
L+ E +D
Sbjct: 239 LVEEEAAKLD 248
>gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Photobacterium angustum S14]
gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
Length = 438
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
L D+ Y AF R++ +A L R L SGG DS L L A + T QN E
Sbjct: 2 LKDIMLY-SAFCRQL-LAHLPASKRFVLAFSGGLDSRVLLDLMARFIT----QNPEYS-- 53
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
A+ V HGL + A+ GI C++ R L G + L++AAR+ R
Sbjct: 54 ---CHAVYVHHGLSSNADIWADKCVVWAKSAGISCDVERVKVLTG--NRISLEQAAREAR 108
Query: 180 YRLFQKVCIQH-QIG-VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
Y + QH +G +LL A H+DDQ E F+L L R SG GLA M + +A
Sbjct: 109 Y----NILAQHVNMGDMLLTAQHSDDQIETFLLALKRGSGPAGLAAMP----MILPFAKG 160
Query: 238 CH-DDLKNHSILLICQGG---NRDWVEDPTNRSPLFVRNRIR 275
H L N + I Q G WVED +N+ + RN IR
Sbjct: 161 MHLRPLLNITRADIEQYGLEHKLSWVEDESNQDERYDRNFIR 202
>gi|399544471|ref|YP_006557779.1| tRNA(Ile)-lysidine synthase [Marinobacter sp. BSs20148]
gi|399159803|gb|AFP30366.1| tRNA(Ile)-lysidine synthase [Marinobacter sp. BSs20148]
Length = 460
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + SGG DS L L A L A+ ++H L+ + E
Sbjct: 23 LPQHDRLCIAFSGGLDSSLLLHLFAAITPAS-----------TALSALHINHQLQPNAAE 71
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + +V G L++AAR RY +F++ ++ LL+A
Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADEL--LLLA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E + RL R SGV GLAGM F+ + + + + + W
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALGAGALARPLLEFSRAQLEAWTEDAGLPW 189
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
+EDP+N F RN +R S+
Sbjct: 190 IEDPSNSDQRFDRNYLRNSV 209
>gi|237786216|ref|YP_002906921.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
gi|237759128|gb|ACR18378.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
Length = 381
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 87 LGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+G SGG DS++L C + GW+ + A+ +DHGL+ S A +
Sbjct: 63 IGCSGGADSLSLVGCAIKQGWR----------------VHAVVIDHGLQAGSAGVATRAA 106
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G ++V+ P++ + AAR+ RYR +V + +L+AH DDQ
Sbjct: 107 NVCQALGASSQVVKVS-----PREA-TETAAREERYRALGQVAQERGGLPVLVAHTGDDQ 160
Query: 205 AELFILRLSRNSGVLGLAGMA---FSSQIFSSYAYSCHDDL----KNHSILLICQGGNRD 257
AE +L L+R +G+ +AGM F + + A + L ++++I + G
Sbjct: 161 AESLLLGLARGAGLGSIAGMPPVLFHHPVVDAGATALGRPLLSIRRDNTIGACAELGITP 220
Query: 258 WVEDPTNRSPLFVRNRIRMSL 278
W DPTN S +R+R+R L
Sbjct: 221 W-HDPTNTSGDNLRSRVRTQL 240
>gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter arcticus 238]
gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter arcticus 238]
Length = 412
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 46/250 (18%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGG DS AL L AG ID L ITVDHGLR + E A +
Sbjct: 10 VVLAVSGGSDSTALMHLAAG--------------SIDRARLHVITVDHGLRGVADEVA-L 54
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL-LIAHHA 201
V+ + D+ ++ ++ W DG QG+LQ AAR R+ + V + H
Sbjct: 55 VAAQSEDLALKHSVLNWQW-DG---QGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTH 110
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSS------QIFSSYAYSCHDDLK----NHSILLIC 251
DDQAE ++RL+R SGV GLAGM +I DL+ H +
Sbjct: 111 DDQAETVLMRLARGSGVAGLAGMQSVGATPTGLRICRPLLQETRADLRAWLSEHGVT--- 167
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRM---SLGDLSSCSFK-SELQAVISACRRTRS-YVEH 306
W +DP+N F R + R +LG+L S + + A + A RR + Y
Sbjct: 168 ------WSDDPSNDDLRFDRVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTDYAAM 221
Query: 307 VCSNLINEAV 316
+ + I ++V
Sbjct: 222 IAQSHITQSV 231
>gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
Length = 436
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 23/245 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R L VSGG DS+ L L + K ID +A + LR +ES +A
Sbjct: 20 RFLLAVSGGLDSVVLAHLFSECK-------------IDFEIA-HCNFNLRGKESDADAVF 65
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + ++ + D + ++ +Q AAR++RY F+++C H + L AHHA
Sbjct: 66 VEKLAEKLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
D E F++ LSR SG+ GL G+ + IL + W ED
Sbjct: 126 KDDLETFLINLSRGSGLNGLTGITAENDRLVRPLLP----FSREEILTYAEANTLAWRED 181
Query: 262 PTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 318
+N S ++RN +R + + ++ F ++ Q + T +E + L ++ VT
Sbjct: 182 SSNASDKYLRNHLRHHAIPALEEAAPQFLTQFQKSQQHLKETALLLEDYTALLFSQIVTQ 241
Query: 319 MDQGY 323
+GY
Sbjct: 242 SFKGY 246
>gi|393775407|ref|ZP_10363720.1| tRNA(Ile)-lysidine synthetase [Ralstonia sp. PBA]
gi|392717457|gb|EIZ05018.1| tRNA(Ile)-lysidine synthetase [Ralstonia sp. PBA]
Length = 455
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ +SGG DSM L + A ++ EA L A V HGL + + +
Sbjct: 26 VAVALSGGRDSMVLLHVMAA-----LLRSQEAAFE---LRAFHVHHGLSPHADQWLEFCA 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + E R R L+ AR+ RY +C +H + L+ AHH DDQ
Sbjct: 78 AECARLSVPFEAHRV--AIQRAGGESLEAVAREQRYTALGDLCRRHGVTALMTAHHQDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E +L+L R +GV GLA M + D+ +I + + WV+D +N
Sbjct: 136 IETLLLQLVRGAGVDGLAAMGPQRNLHGITLLRPWLDVPRTAIEALARQHGITWVDDESN 195
Query: 265 RSPLFVRNRIRMSLGDLSSC 284
P F RN +R L L++
Sbjct: 196 DDPRFARNALRQWLPGLAAV 215
>gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 485
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE- 138
+P H +A VSGG DSMAL + + EF L A V+HGLR E+ +
Sbjct: 24 EPLH-LAAAVSGGADSMALLRILLALQP----------EFGFVLSACHVNHGLRGETADR 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ V + +G+ + + G P + ++ AR +RY F ++C + I +
Sbjct: 73 DEAFVRAECARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFARLCGEG-IDDV 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
AH A+DQAE +LRL+R +G+ G AG+ + + L C+
Sbjct: 132 ATAHTANDQAETLLLRLARGTGLHGAAGIRPKRGCYLRPLLA----LTRQDTESFCRAAG 187
Query: 256 RDWVEDPTNRSPLFVRNRIRMS 277
+ WV D TN + + RNR+R +
Sbjct: 188 QAWVTDETNATDAYARNRVRRA 209
>gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396]
gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Hahella chejuensis KCTC 2396]
Length = 445
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
L+ AAR+ RYR+F++ +H VLL HH +DQAE + RL + GV GLAG+ +
Sbjct: 103 LEAAAREARYRVFERYLSEHADAVLLQGHHQNDQAETILFRLLKGHGVKGLAGIPRQRTL 162
Query: 231 FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL 290
D + + Q WVED +N +F RN +R + S +++ +
Sbjct: 163 GKGILRRPLLDFTRLELEALAQRWGLSWVEDESNVDAVFDRNFLRNEILRPMSARWRNAV 222
Query: 291 QAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAV 325
+ RR S+L++E + QG V
Sbjct: 223 AMIAETGRRMSE-----ASSLLDELAEIDLQGETV 252
>gi|451848061|gb|EMD61367.1| hypothetical protein COCSADRAFT_183412 [Cochliobolus sativus
ND90Pr]
Length = 650
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 19/147 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSMAL L + E + VDH +R ES EEA+ V+
Sbjct: 10 VGIAISGGVDSMALAAL--------YKDFQEEDSELPKAHGFIVDHKVRPESTEEASWVA 61
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGHLQEA------ARDMRYRLFQKVCIQHQIGVLLI 197
++ S +GI I+ W P + L ++ AR +RY+ + C +I L++
Sbjct: 62 EQLRSKLGIDSTIISLTW----PTEFDLHDSKRFETEARMLRYQALGRACRDMKINRLIV 117
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM 224
AHHADDQAE ++R++ N GL M
Sbjct: 118 AHHADDQAETVMMRMANNRLRSGLQAM 144
>gi|383935857|ref|ZP_09989290.1| tRNA(Ile)-lysidine synthase [Rheinheimera nanhaiensis E407-8]
gi|383703176|dbj|GAB59381.1| tRNA(Ile)-lysidine synthase [Rheinheimera nanhaiensis E407-8]
Length = 448
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 29/271 (10%)
Query: 83 HRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+++ L +SGG DSM L +L K F L A+ V+HG+ + +
Sbjct: 27 NQLVLALSGGLDSMVLLHLLVQAQKQQAF-----------ALSAVYVNHGISQHAGHWGQ 75
Query: 142 IVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLLIA 198
+ + +G+ + V+ D +L+ AR RY+ L Q VC + LL A
Sbjct: 76 FCAAQCQALGVSFYQQQVKLSGTD------NLEHKARQARYQALAQYVCTGKHL--LLTA 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQ E +L L R +G GLAG+A + Q W
Sbjct: 128 HHGDDQLETLLLALKRGAGPAGLAGIAARRPFAKGTLLRPLLAFSRQQLEQYAQAHQLSW 187
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSS---CSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
VED +N F RN IR + L F +Q + + ++ ++H + ++
Sbjct: 188 VEDDSNSDTRFERNFIRQQIAPLLQKRWPHFNQTVQRSMQHIAQQQALLDHYTAQALS-- 245
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 346
V V QG + L P++ +D+ + ++LA
Sbjct: 246 VCVNAQGLDLTQLAAYLPAQ-QDLVIRQWLA 275
>gi|345856179|ref|ZP_08808676.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus sp. OT]
gi|344330747|gb|EGW42028.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus sp. OT]
Length = 448
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMR 179
+ L+ V HG+R+ES E ++V + + C + R D G QEAAR+ R
Sbjct: 19 NSLVLTHVHHGVRKESDNEVDLVQTMAAKWEMPCIVHRFDSKRYAEAMGQSFQEAAREWR 78
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y +++ + +L AHH DQAE + RL R SG GLAG+ Y
Sbjct: 79 YARWREDMSKEGCDLLATAHHLGDQAETILYRLLRGSGTAGLAGI-----------YPTK 127
Query: 240 DDL-------KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
D + + IL C + + D +N P+++RNRIR+ L
Sbjct: 128 DSIIRPLLTFRKADILDYCAREDLPYALDHSNEEPVYIRNRIRLEL 173
>gi|421874188|ref|ZP_16305795.1| tRNA(Ile)-lysidine synthetase [Brevibacillus laterosporus GI-9]
gi|372456843|emb|CCF15344.1| tRNA(Ile)-lysidine synthetase [Brevibacillus laterosporus GI-9]
Length = 461
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 130/290 (44%), Gaps = 39/290 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
PH I +GVSGG DS AL + ++ E ++ L A+ ++HG R +ES ++
Sbjct: 2 PHESIVVGVSGGVDSTALLHI--------LSKMNEQYQYGWKLYAVHLNHGFRGDESDQD 53
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPK------QGHLQEAARDMRYRLFQKVCIQHQIG 193
A V +G++C + + P+ QG Q A+R++RY+ +++V +
Sbjct: 54 AAYVEDLCHTLGVKC----YSFYESVPEIMKETGQGP-QVASRELRYQYYRQVAKEVGAT 108
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-------AFSSQIFSSYAYSCHDDLKNHS 246
+ +AHHADDQ E + R+ R + + G GM A ++ + ++L+ +
Sbjct: 109 KVALAHHADDQVETILFRMMRGTSLHGFTGMPQRRWLHAEQIELVRPLLHVFREELEAY- 167
Query: 247 ILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRSY 303
C+ N D +N S + RN +R + + ++ + + R Y
Sbjct: 168 ----CEANNLQPRHDSSNDSRKYKRNLLRHEVTPHLQQVNLRYREHVLQLAEMARVDDDY 223
Query: 304 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS-KFLALVLQFI 352
++ + +N + + ++D + L K D+ L + + L+L ++
Sbjct: 224 LQKLSQEALNRIIVKQESDKIILDRKCL---KTFDLALQRRMIPLILSYL 270
>gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 485
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 90/203 (44%), Gaps = 16/203 (7%)
Query: 81 PHHRIALGVSGGPDSMALCVL---TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
P I + VSGG DS L + AG K G L+ + HGLR +E+
Sbjct: 25 PGDVIVVAVSGGVDSTVLLHIMKEIAGDKALGLQ-----------LICAHLHHGLRGDEA 73
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVL 195
+A V +GI E+ D + G L+ AAR+ RY +V ++ +
Sbjct: 74 DRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYGASSI 133
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
+AHHADDQAE ++RL R SG GLAGM + + + +L C+
Sbjct: 134 ALAHHADDQAETVLMRLLRGSGPSGLAGMRPKRREKNVELIRPLLRIYKTDLLQACRESG 193
Query: 256 RDWVEDPTNRSPLFVRNRIRMSL 278
+VED +N RN IR+ +
Sbjct: 194 LAYVEDSSNLDKEMTRNSIRLDV 216
>gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 438
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 15/211 (7%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
S R + P RIA+ SGG DS+ L V A K +QN + A +
Sbjct: 3 SSRKSQQSPNPGKRIAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQ--------IFAFHI 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
HGL+ + + I + R LD G+++ AR RY +C
Sbjct: 55 HHGLQRLADDWLIFCEKLAKKYKIHFDF-RLLHLDNSQGLGNVESRARAGRYEALSDLCE 113
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI-FSSYAYSCHDDLKNHS- 246
++ I LL+AHH +DQAE +L+L R SGV GLAGM + + ++ + L N S
Sbjct: 114 EYGIEDLLLAHHQNDQAETVLLQLLRGSGVAGLAGMPINRDMQRHNHRITLWRPLLNQSR 173
Query: 247 --ILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + W+EDP+N+ + RN +R
Sbjct: 174 QELEAYAKEHKLKWIEDPSNQDTKYRRNALR 204
>gi|443245488|ref|YP_007378713.1| tRNA(Ile)-lysidine synthase [Nonlabens dokdonensis DSW-6]
gi|442802887|gb|AGC78692.1| tRNA(Ile)-lysidine synthase [Nonlabens dokdonensis DSW-6]
Length = 443
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
IA+ SGG DS+ L L K L I + LR ES ++ + V
Sbjct: 21 IAVACSGGKDSVVLAHLLHACKLK--------------LELIHCNFNLRGAESDQDEDFV 66
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + IV D + + G +Q AARD+RY F + ++I +L+AHH D
Sbjct: 67 KALATRLEHKIHIVHFDTTNVAEQGGISIQMAARDLRYEAFNTIVSDNKIAHVLVAHHID 126
Query: 203 DQAELFILRLSRNSGVLGLAG------------MAFSSQIFSSYAYSCHDDLKNHSILLI 250
DQ E F++ L R +G+ GL G + FSS+ YA + +K
Sbjct: 127 DQLETFLINLGRGAGIHGLTGIRDRNGIILRPLLDFSSKEIEEYA--LQNKIK------- 177
Query: 251 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
W ED +N S ++RN++R L
Sbjct: 178 -------WREDSSNASTKYLRNKLRHDL 198
>gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786]
Length = 491
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A++ L RIAL SGG DS L L A + G + +A+ V HGL
Sbjct: 19 VALSALPHDARIALAYSGGLDSTVL--LHAAARIAGAER----------CVALHVHHGLS 66
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +G+R + D + QG ++ +ARD RYR + +C +H
Sbjct: 67 PNADAWLAHCAETADALGVRFDAAHVD-VPRASGQG-VEASARDARYRALETMCARHGAR 124
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI--- 250
L +A HADDQAE +L+L R +G+ GLA MA Y + D ++ +L +
Sbjct: 125 ALWLAQHADDQAETVLLQLLRGAGIAGLAAMA------PQYRPASTDVVRMRPLLHLLRA 178
Query: 251 -----CQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
Q W++D +N + + RN +R+ +
Sbjct: 179 QLERYAQQHALRWIDDESNANTRYARNALRVDV 211
>gi|400286572|ref|ZP_10788604.1| tRNA-lysidine synthetase [Psychrobacter sp. PAMC 21119]
Length = 521
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 29/232 (12%)
Query: 53 HAHAVEYLTDMTKYREAFSRRMAMAGLKPH-HRIALGVSGGPDSMALCVLTAGWKTGGFN 111
H + L T EA +A G + H R+ L SGG DS+AL L G
Sbjct: 10 HIEPIAELPIDTHLAEALLTSLAEYGEQLHGRRLWLACSGGRDSLALAALCVQLYHQG-- 67
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
F+ LL V+HGL+ +S A V+ + + C+I+ GH
Sbjct: 68 ----KLPFLPQLL--HVNHGLQADSDAWAKHVADWAAAQKVPCQILHAQ------VDGHD 115
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
++AAR RY + + +Q VLL+AHHADDQAE ++RL + +GV GL+GM Q +
Sbjct: 116 EQAARLARYGVMRAQL--NQDDVLLLAHHADDQAETVLMRLIQGAGVNGLSGM----QPW 169
Query: 232 SSYAYSCHD--------DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ H ++ SI Q +++DPTN + VR+ +R
Sbjct: 170 RIQTQNAHRMVLWRPWLTVQRASISTYAQRLKLPYIDDPTNDAGDNVRSGLR 221
>gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
Length = 430
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P+ G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPENG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 425
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYR 181
+ A+ ++H +R E+ ++ V + I C+I D + ++ L+EA R RY
Sbjct: 5 ITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYD 64
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
F K ++ + IAHH +DQAE F+ R+ R +G+ G M C
Sbjct: 65 AFAKTMKKYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAMREKDGNLIR-PLLC--- 120
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+K I+ + + WVED +N+ F RN+IR
Sbjct: 121 VKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIR 154
>gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus italicus DSM 15952]
gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus italicus DSM 15952]
Length = 457
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 16/194 (8%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VS G DSM L L T I + + V+HGLR ES++EA ++
Sbjct: 20 VLLAVSTGVDSMVLLDLLISSVTD-----------IQRIAVVHVNHGLRPESEKEACFIN 68
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + + +W P +++ AR RY F+K+ + VLL AHH DDQ
Sbjct: 69 AYCKEHQL--DFFQANWT---PTSSNIEANARQFRYDFFKKIMNEQGYKVLLTAHHRDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264
E +++ R+ + L G+ S + ++ + + ED TN
Sbjct: 124 LETMLMKAIRDGQLTALKGIVASQPFANGQLVRPLLPYDKQTLYDYAKRRELTYFEDETN 183
Query: 265 RSPLFVRNRIRMSL 278
+ L+ RNR+R +
Sbjct: 184 QDSLYFRNRMRQQV 197
>gi|409045812|gb|EKM55292.1| hypothetical protein PHACADRAFT_184105 [Phanerochaete carnosa
HHB-10118-sp]
Length = 543
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 95/228 (41%), Gaps = 43/228 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
RI + SGGPDS+ L L + + GG + E F + ++ V+H L+ + +
Sbjct: 53 RIVVANSGGPDSVCLLHLLSAVVKQRGGGSLAPEQSAFPSDVYSVHVNHNLQAANAAMQD 112
Query: 142 IVSHRVSDMGIRCEIVRCDW----LDGRPKQGH-LQEAARDMR-------YRLFQKVCIQ 189
+ +G+ W RPK G L+E ARD R + CI
Sbjct: 113 VAQRTAQRLGVDHRTETIPWGTRPFPPRPKAGQPLEELARDARGAYLFATMEVLNARCIA 172
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--------- 240
+ AHHADDQ E I+RLS+ S + G AGM ++ S D
Sbjct: 173 Y-------AHHADDQVETAIMRLSKQSQIWGAAGM---QRVRRWGMGSLRDISPAGPAGM 222
Query: 241 ---------DLKNHSILLICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 278
D+ IL C+ + ++V DPTN P + +RN IR L
Sbjct: 223 LHWIVRPLLDVSKDRILATCEANDLEYVVDPTNFQPDITLRNSIRAYL 270
>gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
Length = 644
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +SGG DSMAL L + + + + A VDH +R ES EEA V+
Sbjct: 11 LGFAISGGVDSMALAAL--------YKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVA 62
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S +G+ I+ W D + + AR +RY+ + C +I L++ HHADD
Sbjct: 63 QELRSKLGMESTILPLTWRDEFDSK-RFETEARTLRYQALGRACRDMKITSLMVGHHADD 121
Query: 204 QAELFILRLSRNSGVLGLAGM 224
QAE ++RLS + GL M
Sbjct: 122 QAETVMMRLSNHRLRSGLQAM 142
>gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
SBW25]
gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
SBW25]
Length = 440
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 21/237 (8%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ V HGL+ + ++G+ ++R G L+ AARD RY+
Sbjct: 52 LGAVHVHHGLQTAADAWPAHCQSICDNLGVPLRVMRVQVQPG----ASLERAARDARYQA 107
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F +V Q VLL H DDQAE + RL R +GV GL+ M + + Y ++
Sbjct: 108 FIEVTGAGQ--VLLTGQHRDDQAETLLFRLLRGAGVRGLSAMPAQRPLAAGYLVRPLLEV 165
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ + +W+EDP+N F RN +R + L + + + QAV S R
Sbjct: 166 SRAELEAYAEEHQLEWIEDPSNADSRFSRNYLRHRV--LPTLTERWP-QAVSSLAR---- 218
Query: 303 YVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKF-LALVLQFICQRQR 357
EH ++EA ++D+ AV+DL+ + PS + L LA + + RQR
Sbjct: 219 TAEH-----LSEAQGLLDE-LAVMDLQAADQPSAFPWLRLRSLTLAPLRELSDARQR 269
>gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
LAA1]
gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
LAA1]
Length = 277
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+GVSGG DSM L L EA + G + V H LRE + +A V
Sbjct: 27 IGVSGGVDSMVLLHLCQRAAE-------EAPSALGGFSVVHVHHHLRETADRDAEFVEQY 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ I CEI +D R G EAA + + GV+L+AHHA D+ E
Sbjct: 80 CREREIPCEIAHVKVVDER---GEGLEAAARRARYQALAERARAKGGVILVAHHAQDELE 136
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRS 266
FI+RL R +G GL M +++ ++ I + VED TN
Sbjct: 137 TFIMRLLRGAGPGGLGAMRPEAEMNGVRVARPLIAVEKGEIDRYAEAHGVPHVEDETNED 196
Query: 267 PLFVRNRIR 275
P F RNR+R
Sbjct: 197 PRFFRNRVR 205
>gi|399889907|ref|ZP_10775784.1| tRNA(Ile)-lysidine synthase [Clostridium arbusti SL206]
Length = 463
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 25/235 (10%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
+ ++ + VSGGPDSM C+L A N + L+ V+H LR +ES E+
Sbjct: 18 NDKVIVAVSGGPDSM--CLLHA--------LNSIKNKLEINLVVAHVNHCLRGKESDEDE 67
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGV--LLI 197
V S + + +R D ++G E A R RY F+ V + +IG + I
Sbjct: 68 EYVKRICSKLNVDFYNIRVDINKISKEKGISSEMAGRTARYEFFENV--RKKIGAQKIAI 125
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AH+A+DQAE I+R+ R +GV GL G+ IF + + I C+ N
Sbjct: 126 AHNANDQAETIIMRIMRGTGVSGLIGIKPIRDGIFVRPLIKINRE----EIEYYCEKNNI 181
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT----RSYVEHV 307
+ D TN ++ RN++R+ L +F ++ ++ T Y+E+V
Sbjct: 182 NPRIDKTNLENIYSRNKVRLELIPYIKENFNKDIVMTLNRLSDTVNIDNDYLEYV 236
>gi|345866218|ref|ZP_08818246.1| tRNA(Ile)-lysidine synthetase [Bizionia argentinensis JUB59]
gi|344049268|gb|EGV44864.1| tRNA(Ile)-lysidine synthetase [Bizionia argentinensis JUB59]
Length = 441
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLR-EESKEE 139
++ + +SGG DS+ L L K L I++ H LR +ES +
Sbjct: 21 KLIIAISGGMDSVVLTHLCHKLK-----------------LNISLAHCNFNLRGDESDGD 63
Query: 140 ANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ V D+ + I + + +Q AARD+RY FQ++ Q + +L A
Sbjct: 64 EDFVLELAEDLDLEVFIESFETEVYAEEHNISIQMAARDLRYNWFQELAEQLKFDYVLTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-CHDDLKNHSILLICQGGNRD 257
HHADD E F + L R +G+ GL G+ ++ + H +LK Q D
Sbjct: 124 HHADDNLETFFINLMRGTGLDGLIGIPETNGVLVRPILPFSHAELKT-----FAQSEKID 178
Query: 258 WVEDPTNRSPLFVRNRIR 275
W ED TN S +VRN++R
Sbjct: 179 WCEDSTNASTKYVRNKLR 196
>gi|319760425|ref|YP_004124363.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
BVAF]
gi|318039139|gb|ADV33689.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
BVAF]
Length = 535
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%)
Query: 82 HHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
+ + L SGG DS L +LT K ++ +F L A+ V HGL E++ + A
Sbjct: 32 YRNLLLSYSGGLDSTVLLDILTTLTKNSQIWM--KSRKFPLFLKAVYVHHGLNEKADDWA 89
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
N +H+ + I+ + + K+ +++ AR +RY++ + +LL AHH
Sbjct: 90 NHCAHQCQIRDVPFNILYIQYFNFCKKRSNVESLARKLRYQVLYDYLNVNVEEILLTAHH 149
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--- 257
DDQ E +L L R SG GL+G+ S +++ +Y Y + LL C G +
Sbjct: 150 MDDQLETVLLALKRGSGPAGLSGI--SREVWLNYDYR----YRVLRPLLGCSRGQLEEYA 203
Query: 258 ------WVEDPTNRSPLFVRNRIRMSL 278
W+ D TN + F RN +R+ +
Sbjct: 204 HRRKLIWINDDTNVNIRFDRNFLRIQV 230
>gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax
ferrireducens T118]
gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118]
Length = 320
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 21/209 (10%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AMA P +A+ SGG DS AL + A G + AI + HG++
Sbjct: 8 AMAAFTPTLPLAVAFSGGADSTALLLACAEKWPGQVH-------------AIHIHHGVQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +G+ + R +D R G E AAR RY+ F+ V + Q
Sbjct: 55 AGDDFERHCQAVCVRLGLPLVVKR---VDARHASGQSPEDAARRARYKAFEAVALVEYAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +G+ G++ M S + + + I
Sbjct: 112 VAIKSIALAQHADDQVETLLLALSRGAGLPGMSAMPASWRRAGLTYHRPLLGVAASDIRR 171
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
G W+EDPTN F RNRIR L
Sbjct: 172 WLVGRGVAWIEDPTNVDEQFTRNRIRARL 200
>gi|340759004|ref|ZP_08695581.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
gi|251835853|gb|EES64391.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
Length = 444
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 24/251 (9%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFID 121
M+ YRE + + + +I +G SGGPDS+ L +L K+ F+
Sbjct: 1 MSLYREILEKNRKDNLIVENDKIVVGFSGGPDSVFLVEMLMKLKKSINFD---------- 50
Query: 122 GLLAITVDHGLREES---KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDM 178
++ + ++H LR E+ E+ ++ + + + + L G+ L+EA R
Sbjct: 51 -IVLVHINHLLRGENSDGDEKFSLEYGKKKGLQVFSRKINITVL-GKKLGLTLEEAGRKA 108
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY LF+++ + + +AH+ DDQ E F+ RL+R +G+ GL G+ ++
Sbjct: 109 RYDLFKEILRETGANKIALAHNKDDQLETFMFRLTRGAGLEGLEGIIAKRDMYIRPISEI 168
Query: 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL----SSCSFKSELQAVI 294
+ I+ N + D TN F RN IR+ L + FK +L ++I
Sbjct: 169 Y----KKDIIKYLNDNNISYRIDETNFENEFTRNSIRLDLIPFIEKRYNPKFKDKLYSLI 224
Query: 295 SACRRTRSYVE 305
R +E
Sbjct: 225 EEIREVNRVLE 235
>gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
versatilis Ellin345]
gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
versatilis Ellin345]
Length = 464
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 20/260 (7%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE 135
A +P R+ + VSGG DS+AL G E G L + + HG+R E
Sbjct: 13 ALFRPGDRVGVAVSGGADSVALL-------RGLLELRSELG---IALSVVHLHHGIRGAE 62
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGV 194
+ + V+ + + R D ++ L+ AARD+RY F+++
Sbjct: 63 ADADEQFVADLAGQFDLSLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL---KNHSILLIC 251
+ AH DDQAE +LR+ R +G GLA + A L + +
Sbjct: 123 VATAHTLDDQAETVLLRILRGTGTRGLAAIPPFRDASPELAACIVRPLLGTERTEVETYL 182
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRSYVEHV 307
+ N+ W ED TN P +RNRIR L + + L+ ++ R Y +
Sbjct: 183 KSLNQPWREDSTNTDPKHLRNRIRHELLPMLEAEYNPALRQSLANLAEIARAEEEYWGPI 242
Query: 308 CSNLINEAVTVMDQGYAVID 327
++ VT+ + G AV+D
Sbjct: 243 VERHFDQIVTMTNFG-AVLD 261
>gi|405979500|ref|ZP_11037843.1| tRNA(Ile)-lysidine synthetase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391916|gb|EJZ86977.1| tRNA(Ile)-lysidine synthetase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 376
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 24/191 (12%)
Query: 79 LKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+P + +G+SGG DS+AL C L + G N ++ +TVDHG+R ES
Sbjct: 33 FQPGSAVVIGLSGGADSLALTLCALDCASRLG-LN-----------IVTVTVDHGVRAES 80
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+EA V G +VR D +G + A R+ R + +V + +LL
Sbjct: 81 ADEARAVGDLARSYGADSRVVRVALAD----KGGPEGAGREARREVLARVARSYDAPILL 136
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGM---AFSSQIFSSYAYSCHDDLKNHSILLICQG 253
H DDQAE +LRL R SG L M A + H L+ + CQ
Sbjct: 137 -GHTLDDQAETVLLRLGRGSGAHSLRAMRQDATDREGIRWIRPLLH--LRRADTIATCQA 193
Query: 254 GNRDWVEDPTN 264
+V+DPTN
Sbjct: 194 LAVSFVDDPTN 204
>gi|395648150|ref|ZP_10436000.1| tRNA(Ile)-lysidine synthetase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 443
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 122/308 (39%), Gaps = 51/308 (16%)
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
+ ++L + +R A + +A SGG DS L L A N
Sbjct: 6 SAKFLQTLAPWRNAPAWHIAF-------------SGGLDSTVLLHLLA---------NLA 43
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR----CEIVRCDWLDGRPKQGHL 171
E + L A+ V HGL+ + +G+ C VR L
Sbjct: 44 KTETLPTLSAVHVHHGLQAAADAWPGHCQSVCDALGVPLRVMCVQVRAG--------ASL 95
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
+ AARD RY+ F V + VLLI H DDQAE + RL R +GV GLA M +
Sbjct: 96 ERAARDARYQAFSDVVGAGE--VLLIGQHRDDQAETLLFRLLRGAGVQGLAAMPMQRALA 153
Query: 232 SSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQ 291
S + + + WVEDP+N P F RN +R + + + Q
Sbjct: 154 SGHLLRPLLGSSRAQLQAYAEEHQLTWVEDPSNADPRFSRNYLRHRVFPRLTERWP---Q 210
Query: 292 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL-NPSKIEDIFLSKF-LALVL 349
AV S R EH ++EA ++D+ A +DL+ PS + + L LA +
Sbjct: 211 AVASLAR----AAEH-----LSEAQGLLDE-LACLDLQTAEQPSPVPWLPLPSLALAPLC 260
Query: 350 QFICQRQR 357
RQR
Sbjct: 261 ALSDARQR 268
>gi|397169763|ref|ZP_10493193.1| tRNA(Ile)-lysidine synthase [Alishewanella aestuarii B11]
gi|396088658|gb|EJI86238.1| tRNA(Ile)-lysidine synthase [Alishewanella aestuarii B11]
Length = 434
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 13/228 (5%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ + HG+ + A + +G+ ++ L GR L++ ARD RY++
Sbjct: 51 LTAVHIHHGISRHADAWAEFCQQQCQKLGVNFKLHWVQ-LQGR---SALEQQARDARYQV 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ + L+ AHHA+DQ E +L L R +G+ G+AGMA S +
Sbjct: 107 LTDY-VTARDSALVTAHHANDQLETLLLALKRGAGLAGMAGMAESRPFGKGLLLRPWLNF 165
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ + + WVED +N+S F RN +R+ + A+I+ RT
Sbjct: 166 SRQQLEHVARALQLSWVEDESNQSAEFDRNFLRLEV----IPKLSERWPALITTSARTSR 221
Query: 303 YVEHV--CSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKFLA 346
+++ ++ E +DL+ L P+ +D+ L K+LA
Sbjct: 222 HLQQALELADYYTERALADCATPDYLDLQQLALQPALQQDLLLRKWLA 269
>gi|422880561|ref|ZP_16927024.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
gi|422929990|ref|ZP_16962930.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 29667]
gi|422930425|ref|ZP_16963356.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK340]
gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
gi|339613623|gb|EGQ18359.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 29667]
gi|339621210|gb|EGQ25773.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK340]
Length = 425
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 31/261 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ + +D LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI-----------DSQKELDIELA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES++E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESEQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + +++C + ++
Sbjct: 104 GKVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGELIR 157
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRT 300
+ ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 158 PLLTFHKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDW 217
Query: 301 RSYVEHVCSNLINEAVTVMDQ 321
++ + H+ +L + V V Q
Sbjct: 218 QTALSHLTRDLDIKNVQVFHQ 238
>gi|282850013|ref|ZP_06259395.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
gi|417000886|ref|ZP_11940880.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ACS-068-V-Sch12]
gi|282580202|gb|EFB85603.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
gi|333975760|gb|EGL76637.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ACS-068-V-Sch12]
Length = 332
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 20/247 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + SGGPDSMAL L T + L VDH +R ESK+E +
Sbjct: 25 RILVACSGGPDSMALLHLLQDIATHRHT--------VYELGVAIVDHCIRLESKDEVLWL 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-----RDMRYRLFQKVCIQHQIGVLLIA 198
++ +G+ D PK Q+ + R +RY+ + + +A
Sbjct: 77 RNQADVLGLPFYTAVFDV----PKLSQAQKLSEETIGRQVRYQWLTGIAQSEGYDYIAVA 132
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + L R +G+ GL GMA S + D+ +LL + + +
Sbjct: 133 HHKDDQAESILAHLIRGTGLNGLTGMAVVSNDYIVPVVRPLLDVTKEELLLYLKEKDISY 192
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI---SACRRTRSYVEHVCSNLINEA 315
D TN + RNRIR + + A++ ++ R S + ++ +E
Sbjct: 193 CIDSTNEDVRYQRNRIRHRIIPELKAINPIVIDAIVRLGASVREDISLISNLTDMAFDEL 252
Query: 316 VTVMDQG 322
VT+ D+G
Sbjct: 253 VTISDEG 259
>gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
Length = 443
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 54/212 (25%)
Query: 83 HRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ES 136
+R+ + +SGG DS+ L + AG+ IT+ H LR+ ES
Sbjct: 19 NRLLIAISGGLDSVVLTHLLFNAGYD-------------------ITLAHCNFNLRDSES 59
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
++ V I C + + + G Q AAR++RY F +C H +
Sbjct: 60 DQDEQFVRELADRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCKDHNYDFI 119
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG------------MAFSSQIFSSYAYSCHDDLK 243
L AHH DDQ E F + L+R +G+ GL G + FS + YA
Sbjct: 120 LTAHHLDDQIETFFINLNRGAGLKGLQGIPQLNGNVIRPLLPFSREQIMEYAM------- 172
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
N +L W ED +NRS + RN++R
Sbjct: 173 NSQVL---------WREDSSNRSNKYQRNQLR 195
>gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 332
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 85/197 (43%), Gaps = 13/197 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEA 140
H RI + SGGPDSMAL L Q+ A L I VDH +R ESK+E
Sbjct: 23 HSRILIACSGGPDSMALLHLL---------QDIAAHRHTKYKLGIAIVDHSIRPESKDEV 73
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE--AARDMRYRLFQKVCIQHQIGVLLIA 198
+ ++V +G+ D + K L E R +RY+ ++ + +A
Sbjct: 74 LWLRNQVDALGLSFYTTTFD-VPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVA 132
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + L R +G+ GL GMA S + D+ +L +
Sbjct: 133 HHKDDQAESILAHLIRGTGLNGLTGMAVVSNDYDIPVIRPLLDVTKAELLAYLADRKLTY 192
Query: 259 VEDPTNRSPLFVRNRIR 275
D TN + RNRIR
Sbjct: 193 CIDSTNDDIRYQRNRIR 209
>gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
Length = 439
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ +SGG DS+ L L + + L+ ++HGLREES EEA V
Sbjct: 12 KIAIALSGGVDSIVLFHLLVTEYKDSYKE----------LVVFHINHGLREESYEEAGFV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA--ARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V D ++ + D + H E AR++RY+ F K+ + LL AHH
Sbjct: 62 EKFVKDFDVKFYKEELNMSD-LERDSHTSEEMLARELRYQAFNKMAKLEGVTKLLTAHHK 120
Query: 202 DDQAELFILRLSRNSGV---------LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQ 252
+DQ E ++RL + + +AG+ + +S + +
Sbjct: 121 NDQVENILMRLLTGRSIDHSLAICEEIEMAGLNIYRPLLNSLKAELEE---------YAK 171
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSF 286
N + D TN + RN IR + L D++S SF
Sbjct: 172 EKNLHYYVDATNFDTDYTRNNIRHNIVPLLNDINSGSF 209
>gi|388470183|ref|ZP_10144392.1| tRNA(Ile)-lysidine synthetase [Pseudomonas synxantha BG33R]
gi|388006880|gb|EIK68146.1| tRNA(Ile)-lysidine synthetase [Pseudomonas synxantha BG33R]
Length = 439
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 11/209 (5%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ + HGL+ + +G+ ++R G L+ AARD
Sbjct: 46 ENLPALSAVHIHHGLQAAADAWPAHCQSVCDSLGVPLRVMRVQVSPG----ASLERAARD 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY+ F +V + VLL A H DDQAE + RL R +GV GLA M + + +
Sbjct: 102 ARYQAFMQVMGAGE--VLLTAQHRDDQAETLLFRLLRGAGVRGLAAMPERRPLATGHLVR 159
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
+ ++ W+EDP+N P F RN +R + + + QA++S
Sbjct: 160 PLLAVSRGALEAYAHEHQLKWIEDPSNADPRFSRNYLRRQVFPALTQRWP---QAILSLA 216
Query: 298 RRTR--SYVEHVCSNLINEAVTVMDQGYA 324
R S + + L + +T DQ A
Sbjct: 217 RTAEHLSEAQGLLDELAHMDLTAADQPSA 245
>gi|334338802|ref|YP_004543782.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum ruminis DSM 2154]
gi|334090156|gb|AEG58496.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum ruminis DSM 2154]
Length = 474
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 82 HHRIA------LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-E 134
HH +A +GVSGGPDS+AL L + E L ++H R E
Sbjct: 14 HHLLASGDLVLVGVSGGPDSVALLHLLFSLRE----------ELNIQLHVAHLNHMFRGE 63
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+K +A+ V + C + D GR + Q AAR++RY F++V
Sbjct: 64 EAKGDASFVRDLAERWNLPCTVRALDVPAYGRERNLSAQVAAREVRYCFFREVLRATGAN 123
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQ 252
L + HHADDQAE ++ L R SG+ GLAGMA ++ + ++ I C+
Sbjct: 124 KLALGHHADDQAESVLMNLFRGSGLQGLAGMAPMRENLYIRPLLA----VRRREIEEYCR 179
Query: 253 GGNRDWVEDPTNRSPLFVRNRIRMSL 278
DP+N +++RN+IR L
Sbjct: 180 EHQLATRLDPSNLKSIYLRNKIRNRL 205
>gi|403049290|ref|ZP_10903774.1| tRNA(Ile)-lysidine synthetase [SAR86 cluster bacterium SAR86D]
Length = 315
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I +G SGGPDS AL L + N I + AI ++H L + S +
Sbjct: 16 KIYVGYSGGPDSSALLYL--------LHINN-----ISNVEAIHINHNLSDNSLKWEEHC 62
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +GI+C + + +D + L+ AAR RY++F K + + +L+ HH+DD
Sbjct: 63 RNTTNKLGIKCHV---ELIDIKVDGDGLESAARKARYKIFAKYLKKDE--QILLGHHSDD 117
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
AE F+LRL R +G+ GL ++ ++ + L IL+ + +V+D +
Sbjct: 118 VAETFLLRLFRGTGLDGLESLSVKRKVGEGHLVRPLIYLSKKDILIYLKDQEISFVKDES 177
Query: 264 NRSPLFVRNRIRMSL 278
N RN +R ++
Sbjct: 178 NFEENQDRNYLRNTI 192
>gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
Length = 471
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 91/230 (39%), Gaps = 22/230 (9%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP R+ L VSGG DSM L L G + V+H LRE S EE
Sbjct: 18 KPTDRLLLAVSGGVDSMVLLDLIQRLPKVVRPWFG----------MVHVNHQLREASIEE 67
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+ I R + +P G ++ AAR+ RY F+ V Q LL H
Sbjct: 68 EKFLVDYCKSANISFFFKRWP-VKEQPTDG-VEAAAREFRYAFFRNVLRDQQATHLLTGH 125
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
H DDQ E ++RL R + +AG+ + S + Q + +
Sbjct: 126 HGDDQIETILMRLVRGGQLESIAGIKEQRSFYGSQLTRPLLPYSKKMLYHYSQERSLVFF 185
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSS----------CSFKSELQAVISACRR 299
ED TN+S + RNR R + L F S+LQ VI+ ++
Sbjct: 186 EDETNKSLDYTRNRYRHQIVPLLKKENTQVLTHFSEFSSDLQDVITVAKK 235
>gi|387906987|ref|YP_006337322.1| PP-loop family protein [Blattabacterium sp. (Blaberus giganteus)]
gi|387581879|gb|AFJ90657.1| PP-loop family protein [Blattabacterium sp. (Blaberus giganteus)]
Length = 448
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 25/235 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGG DSM L L I+ +A + LR +ES E+
Sbjct: 27 KVCVAVSGGLDSMVLINLFLNIPE------------IESEVA-HCNFSLRNKESNEDEIF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + + C + + D L+ K +Q AAR +RY F+K+ ++ +++ HH
Sbjct: 74 IRNFCFKRSLVCHVKKFDTLNFSKKHKLSIQMAARKLRYNWFEKLLKKNSYEYMVLGHHF 133
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DD E F + + R +G+ GL G+ ++ F D IL + N W D
Sbjct: 134 DDSIETFFINIFRGTGIKGLLGIPKKNEKF----IRPLSDFTKKEILHYAKIKNIKWRSD 189
Query: 262 PTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 316
+N+ ++RN+IR L S SF + + ++T +Y+ H + LI + +
Sbjct: 190 SSNQEVKYLRNKIRSVLSTFYSLSF-----SFHNGLKKTINYL-HYENFLIEKKI 238
>gi|416233973|ref|ZP_11629571.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
gi|416245599|ref|ZP_11634582.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
gi|421780620|ref|ZP_16217108.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
gi|407812308|gb|EKF83094.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
Length = 457
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 105/241 (43%), Gaps = 48/241 (19%)
Query: 57 VEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFN 111
V+ +TD +T AF L H ++ L SGG DS+AL C L +
Sbjct: 4 VKLMTDDILTSLSSAFDE----LALPAHAKLYLACSGGRDSLALAYACFLL-------YR 52
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
Q G+ I + V HG + + +V + G C+I+R + + H
Sbjct: 53 Q----GKIIRLPTILHVHHGWQAANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH- 105
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
ARD RY+ F + +Q VL++AHHA+DQAE ++RL +G+ GL+GM
Sbjct: 106 ---ARDARYQAFG--LVMNQGDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ--- 157
Query: 232 SSYAYSCHDDLKNHSILL-----------ICQGGNRD---WVEDPTNRSPLFVRNRIRMS 277
A + H D +I L I Q N +V+D TN P + R RIR
Sbjct: 158 ---AKTVHTDEAAKTITLWRPWLKISRNQISQFANAHALPYVDDITNTDPAYARGRIRQD 214
Query: 278 L 278
+
Sbjct: 215 I 215
>gi|376295268|ref|YP_005166498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
Length = 336
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 127/308 (41%), Gaps = 54/308 (17%)
Query: 27 LSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL-TDMTKYREAFSRRMAMAGLKPHHRI 85
++++ IP T LP FC + E L D+T R+
Sbjct: 1 MAALPADIPPTLQDLLPKWAHFCLYAGRFVEEELGIDLTG-----------------RRV 43
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
+G+SGG DS AL ++ + +F G A+ +DH LR ES ++A
Sbjct: 44 LVGLSGGVDSTALLLV--------LHYLSSRADFTVG--AVHLDHQLRPESADDATFARA 93
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI CE+ D ++G L+EA R+ RY L+ ++ + + H DD
Sbjct: 94 LCERLGIDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDL 153
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN--HSILLICQGGNR------ 256
+E ++RL R +G GL+GMA HD + +LLI + +
Sbjct: 154 SEDVLMRLIRGTGWPGLSGMA------------GHDPARGLIRPLLLIPKSTLKAFVTHL 201
Query: 257 --DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHV-CSNLIN 313
W ED +N P RNR+R + L + Q+V R R VE + L +
Sbjct: 202 GVPWREDASNADPAMTRNRVRNEILPLIEKENPAFWQSVARLWRLGR--VEQAFWAVLES 259
Query: 314 EAVTVMDQ 321
EA ++D
Sbjct: 260 EACEILDN 267
>gi|295134680|ref|YP_003585356.1| PP-loop family protein [Zunongwangia profunda SM-A87]
gi|294982695|gb|ADF53160.1| PP-loop family protein [Zunongwangia profunda SM-A87]
Length = 437
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 47/258 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
++ L VSGG DSM L L K +D +A + LR+ ES +
Sbjct: 20 KLILAVSGGVDSMVLMRLCKKVK-------------LDFAIA-HCNFNLRDNESDGDEEF 65
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ ++ I + + + +Q AAR++RY F+++ I +L+AHHA
Sbjct: 66 VVRAAQNLELKVHIQHFNTISFAEEHKLSIQMAARELRYHWFEELRIAENADYILVAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAG------------MAFSSQIFSSYAYSCHDDLKNHSILL 249
+D E F++ R++G GLAG + FS Q +YA ++H IL
Sbjct: 126 NDSLETFLINFVRSTGPEGLAGIKAENDKILRPLLKFSRQEIENYA-------RDHQIL- 177
Query: 250 ICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEH 306
W ED +N S ++RN+IR + + + + F + R+ VE
Sbjct: 178 --------WREDSSNASTKYLRNKIRHQVIPILEEMNPQFLEGFKNTQEYLRQQLDLVED 229
Query: 307 VCSNLINEAVTVMDQGYA 324
+ +AV +D GY+
Sbjct: 230 YTELIYKKAVKKVDFGYS 247
>gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Alistipes shahii WAL
8301]
Length = 447
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 33/277 (11%)
Query: 68 EAFSRRMAMAGLKPHH-RIALGVSGGPDSMALCVLTA--GWKTGGFNQNGEAGEFIDGLL 124
++F R + L H RI L VSGG DSM + L G++ G + N +
Sbjct: 5 DSFQRYIDENDLATHDDRILLTVSGGVDSMVMLSLFTRCGYRVGVAHCNFQ--------- 55
Query: 125 AITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRL 182
LR ES E+ +V G R + + G ++ AAR +RY
Sbjct: 56 -------LRGAESDEDEVLVEDEAKKHGAAFYNRRFETRAEMERTGESMEMAARRLRYAW 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDD 241
F + +H + IAHHADD E F + L R +G+ GL G++ ++ ++ +
Sbjct: 109 FDALSREHGYTAIAIAHHADDSIETFFINLLRGTGLRGLTGISTQVGKVIRPLLFASRKE 168
Query: 242 LKNHSILLICQGGNR-DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISAC 297
+ +++ NR + ED +NRS ++RN+IR+ L + F S + ++
Sbjct: 169 ILEYAV------QNRIPFREDSSNRSTKYLRNKIRLGLIPRIREINPKFTSLMSRNLARL 222
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS 334
+ ++ H + +EAVT D G I L+ L+P+
Sbjct: 223 TDAQLFINHGIERIRSEAVT-SDTGIDTIHLDRLDPA 258
>gi|422822792|ref|ZP_16870985.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
Length = 425
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK 137
+ H ++ + VSGG DSM L L +Q A E LAI V+H R ES
Sbjct: 16 FQDHRKVLVAVSGGLDSMTLLQLLVD------SQKELAIE-----LAIAHVNHKQRPESD 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGVLL 196
+E + +G++ I + G+ E AAR RY F KV + L+
Sbjct: 65 QEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFGKVMQEGHYTALV 116
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHHADDQAE +RL R + + L+GM + ++C + ++ +
Sbjct: 117 TAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGELIRPLLTFHKSDFPDI 170
Query: 257 DWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ ED +N ++RNRIR + L DL + FK L+ + ++ + H+ +L
Sbjct: 171 QYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDWQTALSHLTRDLDI 230
Query: 314 EAVTVMDQ 321
E V V Q
Sbjct: 231 ENVQVFHQ 238
>gi|392412780|ref|YP_006449387.1| tRNA(Ile)-lysidine synthetase [Desulfomonile tiedjei DSM 6799]
gi|390625916|gb|AFM27123.1| tRNA(Ile)-lysidine synthetase [Desulfomonile tiedjei DSM 6799]
Length = 496
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 23/274 (8%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + LGVSGGPDS+AL + K+ + + +DH LR +S+ +A
Sbjct: 43 PGTTVVLGVSGGPDSVALMHVLHALKS----------DLRCSIHVAHLDHALRSDSRADA 92
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+ + C I R D L+EA R RY F+++ + G + AH
Sbjct: 93 EFTFQAAERLDLPCSIRREDVRTLAANLSMSLEEAGRKARYDYFRELLRKFPGGRIATAH 152
Query: 200 HADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H DD E F LR+ R S + G+ G+ I +A++ + +L + +
Sbjct: 153 HLDDTIETFFLRILRGSSLQGIQGIRPVHGAIIRPFAHTTRSE-----VLEYLEDAGIQY 207
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSF---KSELQAVISACRRTRSYVEHVCSNLINEA 315
DPTN + RN IR + F + L + + ++ S L N A
Sbjct: 208 RIDPTNLTISADRNFIRHDIIPAVQKRFPQYRKPLARTMELIGQEDRFISRQASELFNRA 267
Query: 316 VTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVL 349
V D G + L I + +++ +++ + L L
Sbjct: 268 VRSTDSG---LTLSIEPLWQADEVLVARVIILAL 298
>gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 466
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ R L VS G DSM L + F Q + V+H LR S +EA
Sbjct: 18 NRRFLLAVSTGVDSMVLLQI--------FCQLFPEMQKEPCFGVAHVNHQLRPASAKEAA 69
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + GI RC W + P + ++ +ARD RY F V Q VLL AHH+
Sbjct: 70 FLRQYCQERGIPF-YERC-WEN--PPETGVEASARDFRYTFFADVMSQEGYDVLLTAHHS 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E ++++ R + GM + + +I Q + ED
Sbjct: 126 DDQVETMLMKMMREGRLRSAGGMQQQQPFHTGVLLRPLLTVSKAAIYDYAQAQQIPYFED 185
Query: 262 PTNRSPLFVRNRIRMSL 278
+N PL++RNR+R +
Sbjct: 186 ESNHEPLYLRNRLRQQV 202
>gi|384917248|ref|ZP_10017376.1| tRNA(Ile)-lysidine synthase [Methylacidiphilum fumariolicum SolV]
gi|384525281|emb|CCG93249.1| tRNA(Ile)-lysidine synthase [Methylacidiphilum fumariolicum SolV]
Length = 311
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 88 GVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
G+SGG DS+ L ++ AG K + + +HG R++ ++ +V
Sbjct: 29 GISGGVDSIVLLHSLVEAGKKP----------------IVLHFEHGWRKDEALDSKLVEE 72
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ + E ++ PK + AR+ R+R F + L++AHHADDQ
Sbjct: 73 LSKELNV--EFIKKKSEKSFPKT---EAVAREERFRFFIDTAQRKNCYDLVLAHHADDQV 127
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265
E F+++L R +G G GM S Y D I+ + W ED TN
Sbjct: 128 ETFLMQLLRGTGTKGW-GMDKISSFGKLTIYRPFLDFWKADIIAFAKKNQYCWREDETND 186
Query: 266 SPLFVRNRIRMSL 278
+ LF+RN+IR L
Sbjct: 187 NALFLRNKIRKEL 199
>gi|312883825|ref|ZP_07743544.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368574|gb|EFP96107.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
Length = 436
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++P +I L +SGG DS + L K N +A +A+ V HGL + +
Sbjct: 16 IQPQGQIVLALSGGLDSRVMLALL---KKYCENTGSKA-------IAVHVHHGLSIHADD 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A + G+ C + LD + K L+E+ARD RY K ++ VLL
Sbjct: 66 WAKQCQKWCLESGLECFVEHVS-LDLKGKS--LEESARDARYVALSKHLNEN--DVLLTG 120
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HADDQ E F+L L R SG GL+ M + + ++ +K H I + N +W
Sbjct: 121 QHADDQLETFLLALRRGSGPRGLSCMPQVAPMGNALLVRPLLHVKRHDIESYAKDSNLEW 180
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
+ D +N+ F RN IR ++
Sbjct: 181 LNDESNQDKRFERNYIRHTI 200
>gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
Length = 332
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 22/248 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + SGG DSMAL L T + L VDH +R ESK+E +
Sbjct: 25 RILVACSGGSDSMALLHLLQDIATHRHT--------VYELGVAIVDHCIRPESKDEVLWL 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-----RDMRYRLFQKVCIQHQIGVLLIA 198
+V +G+ D PK Q+ + R +RY+ + + +A
Sbjct: 77 RTQVDVLGLPFYTAVFDV----PKLSQAQKLSEETIGRQVRYQWLTDIAQSEGYDYIAVA 132
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HH DDQAE + L R +G+ GL GMA S ++ D+ +LL + + +
Sbjct: 133 HHKDDQAESILAHLIRGTGLNGLTGMAVVSNDYTVPVVRPLLDVTKEELLLYLKEKDISY 192
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACRRTRSYVEHVCSNLINE 314
D TN + RNRIR + + + A++ S C S + ++ + +E
Sbjct: 193 CIDSTNEDVRYQRNRIRHRIIPELETINPNVVNAIVRLGNSVCEDV-SLISNLTDMVFDE 251
Query: 315 AVTVMDQG 322
VT+ D+G
Sbjct: 252 LVTISDEG 259
>gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
Length = 418
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESEII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P+ G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYKLQLEETK--WDTPHPENG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
AE +++L R+ V + + + I +S +L+ + ++ D
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDY 173
Query: 263 TNRSPLFVRNRIR 275
TN+ +RNR+R
Sbjct: 174 TNQENETLRNRLR 186
>gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
Length = 467
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 90/226 (39%), Gaps = 22/226 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L VSGG DSM L L G + V+H LR+ S EE +
Sbjct: 22 RLLLAVSGGVDSMVLVDLIQRLPNAIRPWFG----------VVHVNHQLRQASMEEEKFL 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S + I R W + ++ AAR+ RY F +V + Q LL HH DD
Sbjct: 72 SQYCASNRIPFFFKR--WPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
Q E ++RL R + +AG+ + D ++ Q + + ED +
Sbjct: 130 QMETILMRLVRGGQLESIAGIKKHRTFYGKQLTRPLLDYSKETLYQYSQERSLSFYEDES 189
Query: 264 NRSPLFVRNRIRMSLGDLSS----------CSFKSELQAVISACRR 299
N S + RNR R + L F S+LQ VI+ ++
Sbjct: 190 NNSLEYTRNRYRHQIIPLLKKENTQVLTHFADFSSDLQDVITVAKQ 235
>gi|335998468|ref|ZP_08564379.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus ruminis SPM0211]
gi|335348323|gb|EGM49829.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus ruminis SPM0211]
Length = 450
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 28/214 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-V 128
F G+ + + + VS G DSM L L E + + + V
Sbjct: 11 FQAEWKKMGVPANETVLVAVSTGCDSMTLLSLLQ-----------RLPEKMRPTVQVAYV 59
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LRE+SK+E + ++ G+ + + W + PK+G ++E+AR+ RYR F+K+
Sbjct: 60 DHQLREQSKKETDFITKYCQKNGLV--LFKNVWEKEFHPKKG-IEESAREFRYRFFEKIM 116
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS------YAYSCHDD 241
+ IG LL AHH++DQAE +++ R + L G+ S++ F + + +
Sbjct: 117 EETGIGYLLTAHHSNDQAETILMKAVRGGDLEQLVGIK-SARTFGTGKLLRPLLHFSKET 175
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
LK ++ + + ED TN +RNR+R
Sbjct: 176 LKEYA-----ERNQIKYFEDETNALDDVLRNRLR 204
>gi|422822803|ref|ZP_16870992.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
gi|422825234|ref|ZP_16873413.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
gi|422856232|ref|ZP_16902889.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
gi|422857314|ref|ZP_16903964.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
gi|422863864|ref|ZP_16910494.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
Length = 425
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI------VSQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + ++C + ++
Sbjct: 104 GKVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGELIR 157
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRT 300
+ + ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 158 PLLTFHKSDFPDIQYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDW 217
Query: 301 RSYVEHVCSNLINEAVTVMDQ 321
++ + H+ +L E V V Q
Sbjct: 218 QTALSHLTRDLDIENVQVFHQ 238
>gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Brevibacterium mcbrellneri ATCC 49030]
gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Brevibacterium mcbrellneri ATCC 49030]
Length = 326
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 89/215 (41%), Gaps = 34/215 (15%)
Query: 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
R+ L+P H + VSGG DSM+L A + EF+ A+TVDHG
Sbjct: 15 RKAVEDALEPGHTYLIAVSGGADSMSLAAACAFLTRKDY-------EFV----AVTVDHG 63
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWL---DGRPKQGHLQEAARDMRYRLFQKVCI 188
L+E S E A ++D+G+ + + DG L+ AR RY +V
Sbjct: 64 LQEGSAEVAARTQRALTDLGLTATVETAEVTATSDG------LEADARTARYAALDRVAK 117
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-----AFSSQIFSSYAYSCHDDLK 243
+ +L+AH +DQAE +L L R SG LAGM + +
Sbjct: 118 ERGAAGVLLAHTQNDQAETVLLGLLRGSGARSLAGMRPRAGRYIRPLLGITRAETESATT 177
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+I + W DP N P F R ++R L
Sbjct: 178 AQNIPV--------W-NDPMNSDPSFTRVKVRTQL 203
>gi|403238500|ref|ZP_10917086.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 10403023]
Length = 461
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL F+Q E+ L+A VDH R +ES+E+ V
Sbjct: 21 IIVGVSGGPDSLALLHYL-------FHQQKEST-----LIAAHVDHMFRGKESEEDLLYV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
I E ++ D + + Q AAR++RY F V +++ L + HH D
Sbjct: 69 REFCESYQIPFESIQVDVTSYKKEHSISSQVAAREVRYDFFADVMRKYKAEYLALGHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGM----AFS-SQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
DQ E ++RL R S +G AGM FS I + D++ + + L
Sbjct: 129 DQIETILMRLVRGSKGIGYAGMQVKRPFSCGSIIRPFLAVTKADIEKYCLELSLVPKR-- 186
Query: 258 WVEDPTNRSPLFVRNRIR 275
DP+N + RNR R
Sbjct: 187 ---DPSNDRDDYTRNRFR 201
>gi|422861102|ref|ZP_16907744.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
Length = 425
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 27/259 (10%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ E L
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLVDYQK----------ELAIELAI 52
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
V+H R ES++E + +G++ + AR RY F K
Sbjct: 53 AHVNHKQRPESEQEEKALVKIAEQLGVKIFTSSF-------SGSFSENVARQFRYDFFGK 105
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V + L+ AHHADDQAE +RL R + + L+GM + +++C + ++
Sbjct: 106 VMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGELIRPL 159
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRTRS 302
+ ED +N ++RNRIR + L DL + FK L+ + ++
Sbjct: 160 LTFHKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDWQT 219
Query: 303 YVEHVCSNLINEAVTVMDQ 321
+ H+ +L E V V Q
Sbjct: 220 ALSHLTRDLDIENVQVFHQ 238
>gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
gi|422847891|ref|ZP_16894574.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
Length = 425
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK 137
+ H ++ + VSGG DSM L L +Q A E LAI V+H R ES
Sbjct: 16 FQDHRKVLVAVSGGLDSMTLLQLLVD------SQKELAIE-----LAIAHVNHKQRPESD 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGVLL 196
+E + +G++ I + G+ E AAR RY F KV + L+
Sbjct: 65 QEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFGKVMQEGHYTALV 116
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHHADDQAE +RL R + + L+GM + ++C + ++ +
Sbjct: 117 TAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGELIRPLLTFHKSDFPDI 170
Query: 257 DWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRTRSYVEHVCSNLIN 313
+ ED +N ++RNRIR + L DL + FK L+ + ++ + H+ +L
Sbjct: 171 QYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDWQTALSHLTRDLDI 230
Query: 314 EAVTVMDQ 321
E V V Q
Sbjct: 231 ENVQVFHQ 238
>gi|430761176|ref|YP_007217033.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430010800|gb|AGA33552.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 469
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 17/231 (7%)
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
GL A+ V HGL E ++ +A + +G+ CE+ R + G +G L+ AAR +RY
Sbjct: 54 GLTAMHVHHGLHEHAQAQAEHCRRFAARLGVDCEVRRIQ-VPGGSGEG-LEAAARRLRY- 110
Query: 182 LFQKVCIQHQIGV-LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
Q + IG +L AHHA DQAE F+L + SG GLA M + +
Sbjct: 111 --QSLAEGLSIGSCVLTAHHAGDQAETFLLAALKGSGPSGLAAMPPLRALGLGWLGRPLL 168
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 300
+ +I Q + WVEDP+NR F RN +R + L + F E + + A
Sbjct: 169 GVGAAAIAAYAQAQDLKWVEDPSNRDTRFDRNYLRRRILPLLTQRFPVEPR--LGAAAGL 226
Query: 301 RSYVEHVCSNLINEAVTVMDQGYAVI------DLEILNPSKIEDIFLSKFL 345
++ V L++ ++D+ Y + D + P L +FL
Sbjct: 227 QAEAVEVLEGLLD---PILDRLYGPVPWTLRMDAFLRQPPGRRSWLLRRFL 274
>gi|331092502|ref|ZP_08341324.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400723|gb|EGG80326.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 470
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
L ++ +GVSGG DS+ L VL KT GF+ ++ + V+H LR E++
Sbjct: 15 LNKADKVVVGVSGGADSVCLLFVLMELQKTIGFD-----------IIVVHVNHLLRGEDA 63
Query: 137 KEEANIVSHRVSDMGIRCEIVR--CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ + V + CE+ R +W+ + K+ L+EA R++R F++ ++
Sbjct: 64 ESDEKYVRELCEKYHLTCEVYRENVEWI-AKNKRESLEEAGRNVRREAFEQTLKKYGGTK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+ +AHH +D AE ++ L+R SG+ GL GM + C + + LL Q
Sbjct: 123 IALAHHRNDNAETLLMNLARGSGLAGLGGMRPVKE-NRIRPLLCLERKEIEEYLLKRQIA 181
Query: 255 NRDWVEDPTNRSPLFVRNRIR 275
+ D TN S + RNR+R
Sbjct: 182 ---YCTDETNYSDAYTRNRVR 199
>gi|452851423|ref|YP_007493107.1| tRNA(Ile)-lysidine synthase [Desulfovibrio piezophilus]
gi|451895077|emb|CCH47956.1| tRNA(Ile)-lysidine synthase [Desulfovibrio piezophilus]
Length = 336
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+G SGG DS AL + T F G + A ++H LR+E++E++
Sbjct: 45 VGFSGGVDSTALIL------TLQFLAKRRGGRIV----AAHMNHNLRKEAQEDSQWCEAF 94
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+GI C D + G ++EA RD RY+ FQ + + +++ HH DD
Sbjct: 95 CKKLGIECFTRSEDIRNSAKINGIGIEEAGRDARYKFFQDIMRLVKGDFVMLGHHLDDLC 154
Query: 206 ELFILRLSRNSGVLGLAGMA-FSSQ--IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
E ++RL+R + GLAGM+ F + + + +LK S L + G W ED
Sbjct: 155 EDVLMRLTRGTAWPGLAGMSGFDPHRTLVRPFLLTPKSELK--SFLQDLKVG---WREDA 209
Query: 263 TNRSPLFVRNRIRMSL 278
+N+ + RNR+R +L
Sbjct: 210 SNQDDEWTRNRVRTTL 225
>gi|326794452|ref|YP_004312272.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
gi|326545216|gb|ADZ90436.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
Length = 431
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 27/268 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL------AITVDHGLREESKE 138
I + SGG DS AL L A E I+ L AI V HG+ E +
Sbjct: 25 IWVAYSGGLDSEALLHLVAS-----------ELESIESLYKGIRLSAIHVHHGVSEHADS 73
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +GI IV ++G + AAR+ RY +F+K + I LL A
Sbjct: 74 WVEHCKTSCAALGIPL-IVEKVVIEG---VASFENAAREARYEVFRKHLQMNDI--LLQA 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HHA+DQAE + RL R +G+ GL G+ S + + Y + I N W
Sbjct: 128 HHANDQAETVLFRLERGTGLKGLGGIPSSRPLADAIIYRPLLNCSRFHIEQYAYSCNLKW 187
Query: 259 VEDPTNRSPLFVRNRIRMS-LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 317
+ED +N+ + RN +R S + + + ++ +A R + + V S L+ +A+
Sbjct: 188 IEDESNQDQAYRRNFLRHSVINPWQNNNPDISIRLAANASRIQKEW--QVVSRLVGQALN 245
Query: 318 VMDQGYAVIDLEILNPSKIEDIFLSKFL 345
M +DL +L P + ++S +L
Sbjct: 246 SMCNDDGSLDLNLL-PEDEQSYWISAYL 272
>gi|398930963|ref|ZP_10664894.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM48]
gi|398164486|gb|EJM52622.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM48]
Length = 442
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L AI V HGL+ + + +G+ +IVR G L+ AARD
Sbjct: 49 ESLPALSAIHVHHGLQAVADAWPEHCRSVCAALGVPLQIVRVQVQPG----ASLERAARD 104
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F +V VLL A H DDQAE + RL R +GV GL+GM + +
Sbjct: 105 ARYHTFAEVTGSGD--VLLTAQHRDDQAETLLFRLLRGAGVRGLSGMPRQRSLGKGHLLR 162
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
D+ + + W+EDP+N+ + RN +R
Sbjct: 163 PLLDVTRAELEVYASAHGLSWIEDPSNQDRQYSRNYLR 200
>gi|350630549|gb|EHA18921.1| hypothetical protein ASPNIDRAFT_187460 [Aspergillus niger ATCC
1015]
Length = 587
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155
MAL L W+ Q + E + + A VDH REES EAN+V+ + DMG++ +
Sbjct: 1 MALAYLCKQWER---TQTQTSDEKV-SVTAFVVDHKAREESTREANMVAGWLDDMGLQTQ 56
Query: 156 IVRCDWLDGRPKQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213
I+ W P + AR +R++ + C H I LL+ HH DD E + RL
Sbjct: 57 ILPLTW----PSHHISAFETHARRLRFQALGQACRAHSIETLLMGHHQDDNVETTLWRLC 112
Query: 214 RNSGVLGLAGMAFSSQI 230
+ GLAG+ ++I
Sbjct: 113 TGARGAGLAGIPAVTRI 129
>gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 687
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT---VDHGLREESKEE 139
R + VSGG DSMAL L + E + G +++T VDH R ES E
Sbjct: 49 QRFGIAVSGGADSMALAYLC---------KQLERSSDVAGAISVTAFVVDHRARPESTIE 99
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL---------------QEAARDMRYRLFQ 184
A V+ + DM IR I+ DW D P Q L + AR +R++
Sbjct: 100 AQKVAGWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALG 159
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLS 213
C + ++ LL+ HH DD E I RLS
Sbjct: 160 IACHEFKLETLLLGHHQDDNIETTIWRLS 188
>gi|392958391|ref|ZP_10323903.1| tRNA(Ile)-lysidine synthetase [Bacillus macauensis ZFHKF-1]
gi|391875561|gb|EIT84169.1| tRNA(Ile)-lysidine synthetase [Bacillus macauensis ZFHKF-1]
Length = 466
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR- 133
+ P I +GVSGGPDSMAL C L + ++A VDH LR
Sbjct: 15 IAPGQTIVVGVSGGPDSMALLHYLCSLRESLRLT--------------IVASHVDHQLRG 60
Query: 134 EESKEEANIVSH--RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
+ES+E+ V+ R D+ + + + + Q AAR+ RY F++V +
Sbjct: 61 KESQEDLAFVAAYCRQWDVPFSGKAIDVAAYKKQQQLTSTQVAARECRYAFFKEVMASYH 120
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLIC 251
L +AHH DDQ E ++R++R S LAG+A + + I C
Sbjct: 121 ADALALAHHGDDQIETMLMRMTRGSSSGALAGIAAVRPFHTGVLIRPFLGITKEEIEHYC 180
Query: 252 QGGNRDWVEDPTNRSPLFVRNRIR 275
+ + +D TN + RNR R
Sbjct: 181 KVHSFAVRQDATNDLDDYTRNRFR 204
>gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera versatilis 301]
gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera versatilis 301]
Length = 456
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
LKP+ + L +SGG DS L +L A +T F L A+ V HGL +
Sbjct: 34 LKPNQHVLLALSGGLDSTVLLHLLAAAKQTIRFE-----------LHAMHVHHGLSPNAD 82
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLL 196
A+ + + + ++VR LD KQG ++ AAR +RY LF ++
Sbjct: 83 AWADFCMQQCQLLNVPIKVVRVQ-LDLNAKQG-IEAAARQLRYEALFDFKVSGIAPDFVV 140
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
AHH DDQAE +L+L R +GV GLA M + S D+ ++ + N
Sbjct: 141 TAHHQDDQAETLLLQLFRGAGVKGLASMGCIDE--SRRLMRPLLDISRQTLQEYAEQNNI 198
Query: 257 DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 304
W D +N + + RN +R + + + + S V S RT S++
Sbjct: 199 QWCNDESNDNTQYERNFVRHDVMPVLATRYPS----VKSVLARTASHL 242
>gi|372209923|ref|ZP_09497725.1| tRNA(Ile)-lysidine synthase [Flavobacteriaceae bacterium S85]
Length = 431
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQI 230
Q AAR++RY+ F ++C +H + +L AHHA+D E F + LSR +G+ GL G+ + ++
Sbjct: 96 QLAARELRYQWFDELCQEHSLDYILTAHHANDVLETFFINLSRGTGLDGLTGIPPVNGKV 155
Query: 231 FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDLSSC--SFK 287
+ + N++ +W ED +N ++RN+IR + + +L +F+
Sbjct: 156 IRPLLPYTREQIVNYA-----ATHQLEWREDQSNAETKYIRNKIRHLIVPELQELHPAFE 210
Query: 288 SELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAV 325
+ ++ ++++S++++ ++ D G+ +
Sbjct: 211 TNFIKTLNYLQQSKSFIQNQIQSIKKRVFVTQDSGFII 248
>gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + +V D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|148981150|ref|ZP_01816312.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
gi|145960977|gb|EDK26302.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
Length = 443
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFID 121
MT E F+ + +KPH R+ + SGG DS L L A + KT +
Sbjct: 1 MTHLIETFTSVFDQSAIKPH-RLVVAFSGGVDSRVLLELAAQYTKTHEIDCQ-------- 51
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
AI V HGL + + + A D+ + + R LD R + +++ ARD RY
Sbjct: 52 ---AIHVHHGLSDNADQWAEQCQVWCDDLSVPLAVERVS-LDVRSGES-IEKLARDARYN 106
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
F+ Q VL+ H DDQ E F+L L R SG GL+ MA ++
Sbjct: 107 AFKSHL--RQGDVLVTGQHVDDQVETFLLALKRGSGPKGLSSMAKVMPFSGAHIVRPMLS 164
Query: 242 LKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ I + WVED +N+ F RN IR
Sbjct: 165 VTRAEIEAFARRMGLTWVEDESNQDVRFDRNFIR 198
>gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123641037|sp|Q493B5.1|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 510
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H R+ L SGG DS L + K + + F+ L AI V HG+ S E A+
Sbjct: 24 HTRLVLSYSGGLDSTVLLDILTRLKNNS--DHFTSSPFM--LRAIYVHHGISNYSDEWAS 79
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLLIAHH 200
++ GI ++ + + KQ +++ AR++RY+ L+ ++ + +LL AHH
Sbjct: 80 HCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKLYNRLNSKE---ILLTAHH 136
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY-AYSCHDDLKNHSILLICQGGNRDWV 259
+DQ E L L R SG GL+GM+ ++ + Y D + + W+
Sbjct: 137 MNDQVESLFLALKRGSGPSGLSGMSKNALYANKYRLLRPLLDCSREQLEMYAYKKKLVWI 196
Query: 260 EDPTNRSPLFVRNRIRMSL 278
ED TN F RN +R+ +
Sbjct: 197 EDDTNTDTRFDRNFLRIKI 215
>gi|343924381|ref|ZP_08763931.1| tRNA(Ile)-lysidine synthase [Gordonia alkanivorans NBRC 16433]
gi|343765713|dbj|GAA10857.1| tRNA(Ile)-lysidine synthase [Gordonia alkanivorans NBRC 16433]
Length = 312
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
PH + +G+SGG DS+AL TA G + + A+ VDHGL+E S A
Sbjct: 16 PHASVCVGLSGGADSLAL---TATAVRAGLD-----------VTALVVDHGLQEGSDHVA 61
Query: 141 NIVSHRVSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ ++G + VR +G L+ AARD RY + L+A
Sbjct: 62 GRAATTARELGAHARVLEVRVG------TRGGLEAAARDARYTALDAARDGRPV---LLA 112
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H ADDQAE +L L+R SG +AGM + ++ L +C
Sbjct: 113 HTADDQAETVLLGLARGSGARSIAGMRAWKAPWGRPLLR----VRRMQTLAVCTELGLAV 168
Query: 259 VEDPTNRSPLFVRNRIRMSL 278
DP NR P F R R+R +
Sbjct: 169 HHDPHNRDPRFTRVRLRAEV 188
>gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
gi|421186995|ref|ZP_15644375.1| hypothetical protein AWRIB418_1607 [Oenococcus oeni AWRIB418]
gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
gi|399964702|gb|EJN99337.1| hypothetical protein AWRIB418_1607 [Oenococcus oeni AWRIB418]
Length = 299
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ L +SGG DS L L +++ + L VDH LR +S E ++
Sbjct: 23 KLLLAISGGVDSTVLADLLFKYESNPRSH----------LFLAHVDHQLRADSANETKLI 72
Query: 144 SHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ ++ G+ C + W L+ P G +++AAR RY ++++ ++ +++A HAD
Sbjct: 73 DDQFANRGL-C-VFHEKWPLEKHPHSG-IEDAARKFRYDFYKRMALKVGARKIILAQHAD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN---HSILLICQGGNRDWV 259
DQAE +L++ R + ++ M +S + L N I + + W+
Sbjct: 130 DQAETTLLKIIRGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWI 189
Query: 260 EDPTNRSPLFV-RNRIR 275
ED TN+ P + RN+IR
Sbjct: 190 EDSTNKDPDYTSRNQIR 206
>gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
Length = 425
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 120/269 (44%), Gaps = 40/269 (14%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L ++ E E I+ LA
Sbjct: 4 QQFFQMVQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKYR--------EKLE-IEIFLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
++HG+R+ES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HINHGVRKESDFEEEELKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
++ L+ AHHADDQAE +R+ R S + ++GM Q F+ N
Sbjct: 107 MLEENCTALVTAHHADDQAETIFMRILRGSRLFHISGMK-EKQKFA-----------NGE 154
Query: 247 I---LLICQGGNRDWV---EDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISAC 297
+ LL Q N + ED TN+ ++RNRIR L + + F+ L + +
Sbjct: 155 LIRPLLSFQKSNFPPIFHFEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKHLIELGTEI 214
Query: 298 RRTRSYVEHVCSNLINEAVT-VMDQGYAV 325
+ + + ++ N++ ++ Q Y+V
Sbjct: 215 SQMQDALAYLTKNIVATSLQEFQSQPYSV 243
>gi|386856612|ref|YP_006260789.1| cytosine deaminase [Deinococcus gobiensis I-0]
gi|380000141|gb|AFD25331.1| cytosine deaminase [Deinococcus gobiensis I-0]
Length = 518
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 85 IALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+A+GVSGG DS+AL ++ G + +A +DH LR ES ++A
Sbjct: 1 MAVGVSGGADSVALLRALVLVGARP----------------VAAHLDHALRPESAQDAAW 44
Query: 143 VSHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V +D+G+ R D + GR + +++EAAR +RY + H G++L AH
Sbjct: 45 VGALAADLGVPFGTARVDVGAVAGR-RGWNVEEAARRVRYDFLARTARAHGAGLVLTAHT 103
Query: 201 ADDQAELFILRLSRNSGVL-GLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
DQAE + L R L G+A ++ + + DL+ L +DW
Sbjct: 104 RRDQAETVLWGLLRGEATLRGIA--PVWGRVRRPWLDAPRADLETFLRAL-----GQDWR 156
Query: 260 EDPTNRSPLFVRNRIR 275
EDPTN P + R +R
Sbjct: 157 EDPTNADPAYTRAWLR 172
>gi|333373049|ref|ZP_08464967.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Desmospora sp. 8437]
gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Desmospora sp. 8437]
Length = 477
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 85 IALGVSGGPDSMAL------CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK- 137
+ +GVSGGPDS AL T GWK A+ V+HGLR E+
Sbjct: 23 VLVGVSGGPDSTALLHALSRIAPTHGWKVA----------------AVHVNHGLRGENSR 66
Query: 138 ----------EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
E I H V +G+R + + K G+ Q AR +RY F +V
Sbjct: 67 GDEKYVRTCCEHWQIPCH-VEQVGVRQVLAQ--------KGGNKQAVARSLRYAAFLRVA 117
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ L +AH ADDQ E ++RL R +G GLAG+ + + ++ +
Sbjct: 118 RRVGAECLALAHQADDQVETLLMRLIRGTGPAGLAGIPATREWRGLRIVRPLLEVWRSDV 177
Query: 248 LLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
C D +NR P RNRIR L
Sbjct: 178 EAYCTRYGLTPRLDESNRDPRHTRNRIRHHL 208
>gi|435852922|ref|YP_007314241.1| tRNA(Ile)-lysidine synthetase [Halobacteroides halobius DSM 5150]
gi|433669333|gb|AGB40148.1| tRNA(Ile)-lysidine synthetase [Halobacteroides halobius DSM 5150]
Length = 466
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 26/255 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ +GVSGGPDS+AL + + ++ L ++H LR + +K++A
Sbjct: 22 QVLVGVSGGPDSLALAHILKQLQK----------DYQLDLHIAHLNHQLRGKRAKQDAEF 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V S + I D +Q H L++AAR +RY F + + + + H
Sbjct: 72 VKKITSKWQLPVTIESYDV--KSYQQEHSLSLEDAARKIRYNFFFNLLDKLNFDKIAVGH 129
Query: 200 HADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
HADDQAE +++ R +G+ GL GMA + +I L+++ C +
Sbjct: 130 HADDQAETVLMKFLRGAGLKGLGGMAPQNEKIIRPLIELSKSQLQDY-----CSKYELNP 184
Query: 259 VEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRSYVEHVCSNLINE 314
D TN + RN+IR+ L L + + L A ++ CR ++ + L+ +
Sbjct: 185 RFDETNAESIQQRNKIRLELLPLLKEDYNNNLVATLNRTAQICRTEDDFLSQQAAQLLEK 244
Query: 315 AVTVMDQGYAVIDLE 329
+ + ++D+E
Sbjct: 245 IIIKQNTEQLILDVE 259
>gi|390949243|ref|YP_006413002.1| tRNA(Ile)-lysidine synthetase [Thiocystis violascens DSM 198]
gi|390425812|gb|AFL72877.1| tRNA(Ile)-lysidine synthetase [Thiocystis violascens DSM 198]
Length = 475
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 84/193 (43%), Gaps = 16/193 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLREESKEEANI 142
R +G SGG DS L A + E + G L A+ +DHGL +S A
Sbjct: 21 RCWIGFSGGLDSSVLLSAAASVR-----------ERLPGALQAVHLDHGLHPDSATWAAH 69
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + I I RC L P + ++ AR+ RYR F + + LL AH+ D
Sbjct: 70 CQSQCDALVIPLTI-RCLHLQPHPGES-IEAVAREARYRAFSSLLGPGDL--LLAAHNRD 125
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
DQAE +L L R SGV GLA M F D ++ Q DW++DP
Sbjct: 126 DQAETLLLALLRGSGVQGLAAMPFEMPCGPGRLIRPLLDTTRETLTAYAQTQGLDWIDDP 185
Query: 263 TNRSPLFVRNRIR 275
+NR RN +R
Sbjct: 186 SNRVTSLDRNYLR 198
>gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens AM1]
gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
[Methylobacterium extorquens AM1]
Length = 342
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P L VSGGPDS AL + AG D TVDH LR S +E
Sbjct: 22 EPARPALLAVSGGPDSTAL-----------MHAAARAGR--DRFRVATVDHALRPGSADE 68
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V +++G+ I+ D P+ G +Q +AR RYRL G++L A
Sbjct: 69 ALGVGRLATELGLVHTILTWDA----PRHGSRIQASARGARYRLLTDHAAGIGAGLILTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM 224
H DDQAE ++RL SG GLAGM
Sbjct: 125 HTLDDQAETVLMRLIAGSGPSGLAGM 150
>gi|349611837|ref|ZP_08891067.1| hypothetical protein HMPREF1027_00494 [Lactobacillus sp. 7_1_47FAA]
gi|348608302|gb|EGY58287.1| hypothetical protein HMPREF1027_00494 [Lactobacillus sp. 7_1_47FAA]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|395794788|ref|ZP_10474105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. Ag1]
gi|395341057|gb|EJF72881.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. Ag1]
Length = 439
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 19/206 (9%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L AI V HGL+ + +G+ ++R G L+ AARD RY+
Sbjct: 51 LSAIHVHHGLQAAADAWPAHCQFVCDALGVPLRVIRVQVQPG----ASLERAARDARYQA 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F +V ++ L+ H DDQAE + RL R +GV GLA M + Y D+
Sbjct: 107 FAEVIGAGEL--LVTGQHRDDQAETLLFRLLRGAGVRGLAAMPAQRPLADGYLVRPLLDV 164
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ + W+EDP+N P F RN +R + + + QAV + R
Sbjct: 165 SRAELEAYAREHQLTWIEDPSNADPRFSRNYLRHHVFPQLTERWP---QAVSTMAR---- 217
Query: 303 YVEHVCSNLINEAVTVMDQGYAVIDL 328
C+ ++EA ++D+ A +DL
Sbjct: 218 -----CAEHLSEAHGLLDE-LAQMDL 237
>gi|72163296|ref|YP_290953.1| Fis family transcriptional regulator [Thermobifida fusca YX]
gi|123628619|sp|Q47KU2.1|TILS_THEFY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|71917028|gb|AAZ56930.1| helix-turn-helix, Fis-type [Thermobifida fusca YX]
Length = 324
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 90 SGGPDSMALCVLTA------GWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
SGGPDS+AL TA G + GG +TVDHGL+E S E A+ V
Sbjct: 33 SGGPDSLALAGATAFVAPRLGLRAGG----------------VTVDHGLQEGSAERADTV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + ++G + R G G + AAR RY +K HQ +L+ H DD
Sbjct: 77 AALLRNLGF-DPVERVSVTVG--TAGGPEAAARSARYAALEKTADVHQAAAVLLGHTRDD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
QAE +LRL+R SG LA MA + + + + L+ G W DP
Sbjct: 134 QAETVLLRLARGSGARSLAAMATRTGRYLRPFLDVDRRTVHEAASLM---GFEPW-SDPH 189
Query: 264 NRSPLFVRNRIR 275
N P + R+R+R
Sbjct: 190 NTDPAYTRSRVR 201
>gi|343500511|ref|ZP_08738403.1| tRNA(Ile)-lysidine synthase [Vibrio tubiashii ATCC 19109]
gi|418477298|ref|ZP_13046431.1| tRNA(Ile)-lysidine synthase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820227|gb|EGU55053.1| tRNA(Ile)-lysidine synthase [Vibrio tubiashii ATCC 19109]
gi|384575038|gb|EIF05492.1| tRNA(Ile)-lysidine synthase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 443
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI L +SGG DS + L A + K+ LA+ V HGL E + A
Sbjct: 24 RIVLALSGGLDSRVMLELMASYCKSRKLE-----------CLAVHVHHGLSENADSWAEQ 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
H ++G+ + + QG ++E+AR+ RY +K + + LL HA
Sbjct: 73 CEHWCQELGVAFVLEKVQ----LATQGRSIEESAREARYTALKKHLQDNDL--LLTGQHA 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
DDQ E F L L R SG GL+ MA S + + H I WVED
Sbjct: 127 DDQLETFFLALKRGSGPKGLSSMAQSMPFGHANLLRPLLTISRHEIEEFAHAKQLAWVED 186
Query: 262 PTNRSPLFVRNRIRMSL 278
+N+ F RN +R SL
Sbjct: 187 ESNQDQRFERNFVRHSL 203
>gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
Length = 430
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|71064744|ref|YP_263471.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
gi|71037729|gb|AAZ18037.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
Length = 525
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L SGG DS+AL L Q F+ LL V+HGL+ +S A V
Sbjct: 42 RIWLACSGGRDSLALAALCVQ-----LYQQSRL-PFLPQLLH--VNHGLQADSDIWAQHV 93
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I C I++ GH ++AAR RY + + +Q VLL+AHHADD
Sbjct: 94 AEWAKRQKIPCTILQAQ------VNGHDEQAARQARYDVMRTQL--NQDDVLLLAHHADD 145
Query: 204 QAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
QAE ++RL + +G+ GL GM + + + ++ SI Q ++
Sbjct: 146 QAETVLMRLVQGAGLNGLTGMQPWRVQTQGVHRIVLWRPWLTIQRASISTYAQRLKLSYI 205
Query: 260 EDPTNRSPLFVRNRIR 275
+DPTN VR+ +R
Sbjct: 206 DDPTNDGGDNVRSGLR 221
>gi|410726025|ref|ZP_11364285.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. Maddingley MBC34-26]
gi|410601457|gb|EKQ55968.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. Maddingley MBC34-26]
Length = 467
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 26/275 (9%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
YR+ S + P +I + +SGGPDS+ L + K N EA
Sbjct: 2 YRKVLSYVKDNNLISPGDKILVALSGGPDSVCLLNILYDLKEE-LNIRIEAAH------- 53
Query: 126 ITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRL 182
V+H LR +++ ++ V + MGI+C + R D ++ K+ + + A R +RY
Sbjct: 54 --VNHLLRGDDAFKDEEYVIDLCNKMGIKCFLKRVD-INAYSKEYKMSSEMAGRKVRYDF 110
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS--SQIFSSYAYSCHD 240
F+++ ++ + + AH+A+DQAE + RL R +G+ GL G+ S +++ D
Sbjct: 111 FEEILMKEEFNKIATAHNANDQAETILFRLMRGTGLEGLVGIKASRDNKVIRPILCLSRD 170
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----A 296
+++ + L N D TN ++ RN+IR+ + +F ++ ++
Sbjct: 171 EIEKYIKL-----KNLRPRIDKTNFEKVYNRNKIRLDILPYMKENFNVDIIQTLNRMALL 225
Query: 297 CRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 331
++ ++E++ ++ N+ D Y +I EI
Sbjct: 226 LQKDNQFLENLSLSIYNKYCVESDD-YFIIKKEIF 259
>gi|289433574|ref|YP_003463446.1| hypothetical protein lse_0205 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169818|emb|CBH26356.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 648
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 23/202 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL---AITV---DHGLREESK 137
++ + VSGGPDS+AL F Q + L+ AI+V +HGLRE +
Sbjct: 23 KLLVAVSGGPDSLALL---------HFLQ-------MSNLVPKKAISVAHLNHGLRENAI 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+E IV + I I + Q ++E AR RY F+K+ + I L+
Sbjct: 67 KEQLIVRNYCEKHKIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNR 256
+AHHADDQ E ++RL R S +G +G+ + A + I+
Sbjct: 127 LAHHADDQIETILMRLVRGSSSIGWSGIQPKRSMRGGQAIRPFLSITKAEIIDYANRHEL 186
Query: 257 DWVEDPTNRSPLFVRNRIRMSL 278
+ D +N SP + RNR R +
Sbjct: 187 TYEIDESNSSPKYTRNRYRKEI 208
>gi|416216097|ref|ZP_11623498.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
Length = 451
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL----- 249
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 250 ------ICQGGNRD---WVEDPTNRSPLFVRNRIRMSL 278
I Q N +V+D TN P + R RIR +
Sbjct: 172 KILRDKISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners ATCC 55195]
gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners ATCC 55195]
Length = 418
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESKII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYQLQLEETK--WDAPHPANG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
AE +++L R+ V + + + I +S +L+ + +V D
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDY 173
Query: 263 TNRSPLFVRNRIR 275
TN+ +RNR+R
Sbjct: 174 TNQENETLRNRLR 186
>gi|398859866|ref|ZP_10615531.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM79]
gi|398235802|gb|EJN21609.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM79]
Length = 442
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L AI V HGL+ + +G+ E+VR G L+ AARD RY
Sbjct: 54 LTAIHVHHGLQTAADAWPEHCQSVCDALGVPLEVVRVQVEPG----ASLERAARDARYGA 109
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F + H VLL H DDQAE + RL R +GV GL+GM + + D+
Sbjct: 110 F--IAATHVGDVLLTGQHRDDQAETLLFRLMRGAGVRGLSGMPSERPLGRGHLLRPLLDV 167
Query: 243 KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 302
+ W+EDP+N+ F RN +R + + + + QAV + R
Sbjct: 168 TRAELEAYATEYQLGWIEDPSNQDRQFSRNYLRHQVFPVLTARWP---QAVATMAR---- 220
Query: 303 YVEHVCSNLINEAVTVMDQGYAVIDL 328
+ ++EA ++D+ A IDL
Sbjct: 221 -----SAAHLSEAQELLDE-LAQIDL 240
>gi|416249290|ref|ZP_11636466.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
Length = 451
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL----- 249
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 250 ------ICQGGNRD---WVEDPTNRSPLFVRNRIRMSL 278
I Q N +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|416256228|ref|ZP_11639595.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
Length = 451
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL----- 249
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 250 ------ICQGGNRD---WVEDPTNRSPLFVRNRIRMSL 278
I Q N +V+D TN P + R RIR +
Sbjct: 172 KILRDKISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|401681783|ref|ZP_10813679.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. AS14]
gi|400185788|gb|EJO20013.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. AS14]
Length = 425
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H +I + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQGHRKILVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+KV L+ AHHADDQAE +RL R + + L+GM + +++C + ++
Sbjct: 104 EKVMQAEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGELIR 157
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRT 300
+ ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 158 PLLTFHKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDW 217
Query: 301 RSYVEHVCSNLINEAVTVMDQ 321
++ + H+ +L E V +Q
Sbjct: 218 QTALSHLTRDLDIENVQAFNQ 238
>gi|416156561|ref|ZP_11604600.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
gi|416228003|ref|ZP_11627355.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
Length = 451
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL----- 249
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 250 ------ICQGGNRD---WVEDPTNRSPLFVRNRIRMSL 278
I Q N +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens CM4]
gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens CM4]
Length = 347
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
E +R +A +P L VSGGPDS AL + AG D L T
Sbjct: 10 ERLARALAPFLEEPARPALLAVSGGPDSTAL-----------MHAAARAGR--DLLHVAT 56
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKV 186
VDH LR S +EA V +++G+ I+ D P+ G +Q +AR RY+L
Sbjct: 57 VDHALRPGSADEALGVGRLAAELGLVHTILTWDA----PRHGSRIQASARGARYKLLTDH 112
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
+ G++L AH DDQAE ++RL SG GLAGM
Sbjct: 113 AARIGAGLILTAHTLDDQAETVLMRLIAGSGPSGLAGM 150
>gi|222152147|ref|YP_002561307.1| hypothetical protein MCCL_1904 [Macrococcus caseolyticus JCSC5402]
gi|222121276|dbj|BAH18611.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 403
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 86/204 (42%), Gaps = 30/204 (14%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K I + VSGG DSM L L ++G F Q L + V+H LR+ S+EE
Sbjct: 6 KEDENIGVAVSGGVDSMVL--LDKIRRSGCFKQ----------LYVLHVNHQLRDVSREE 53
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPK-----QGHLQEAARDMRYRLFQKVCIQHQIGV 194
++ + GI + PK +Q AR +RY F+ V + +
Sbjct: 54 QEMIQRYCTSYGIELIVYTI------PKGTFDLSKSIQHKARKLRYDFFESVAKEKDLSW 107
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG 254
+L AHH DDQ E RL N GM Q+ A + L N+S + Q
Sbjct: 108 VLTAHHKDDQMETIFFRLLSNRFTFQPPGM----QMIVKGAVTYGKPLLNYSKSELYQYA 163
Query: 255 NRD---WVEDPTNRSPLFVRNRIR 275
R+ ++ED +N + RN IR
Sbjct: 164 ERERVPFMEDESNEEVKYTRNYIR 187
>gi|381191007|ref|ZP_09898519.1| tRNA(Ile)-lysidine synthase [Thermus sp. RL]
gi|380451096|gb|EIA38708.1| tRNA(Ile)-lysidine synthase [Thermus sp. RL]
Length = 507
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 43/241 (17%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D+ +RE SR L P + L VSGG DS+AL L EAG
Sbjct: 2 DVPAFRERLSR------LAPKDPLVLAVSGGGDSVALAHLVK-----------EAGR--- 41
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGI-----RCEIVRCDWLDGRPKQGHLQEAAR 176
+ +DHGLR ES + V +G R E+ R G +L+ AR
Sbjct: 42 QAVVAHLDHGLRPESPLDQAFVQALAERLGFPFFTERVEVARIAQARGE----NLEAVAR 97
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL----SRNSGVLGLAGMAFSSQIFS 232
++RY +V + + +L AH DDQAE +L+L +R +G+ G+ +
Sbjct: 98 EVRYAFLHRVAREVRARAILTAHTLDDQAETVLLQLLQGTARATGIREREGL-----VVR 152
Query: 233 SYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 292
++L+ + L +G W EDPTN+ P RN +R+ + L F + +A
Sbjct: 153 PLLVHTREELRAY---LRARGET--WREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRA 207
Query: 293 V 293
+
Sbjct: 208 L 208
>gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
Length = 439
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ + HGL+ + +G+ ++R G + AARD
Sbjct: 46 ETLPPLSAVHIHHGLQAAADAWPGHCQSVCDGLGVPLRVMRVQVQPG----ASPERAARD 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY+ F +V + VLL H DDQAE + RL R +GV GLA M ++ +
Sbjct: 102 ARYQAFTEVTGAGE--VLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPAHRRLAGGHLVR 159
Query: 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 297
D+ ++ W+EDP+N P F RN +R + F + + A
Sbjct: 160 PLLDVSRVALENYADAHQLQWIEDPSNADPRFSRNYLRHRV-------FPTLTERWPQAV 212
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFICQ-R 355
VEH ++EA ++D+ A +DL+ + PS + L L+ + R
Sbjct: 213 SNLARAVEH-----LDEAQGLLDE-LACMDLKTADQPSPFPWLPLPSLALTPLRELSDAR 266
Query: 356 QR 357
QR
Sbjct: 267 QR 268
>gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
Length = 408
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)
Query: 84 RIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++ + VSGG DS+ L ++ GW G V HGLRE S EE
Sbjct: 3 KVLVAVSGGVDSIVLLDRLVKQGWDVG----------------VAHVHHGLREASDEEYT 46
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+H + + R + +G Q H ++A RY F+ V +H L AHHA
Sbjct: 47 FVAHVAASYQVAFHGTRLHFQEG-ASQAHYRKA----RYHFFEDVMNEHGYDTLATAHHA 101
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLI--CQGGNRDWV 259
DD E +++L RN V+ + G+ ++F LK LI + W
Sbjct: 102 DDVLETVLIQLHRN--VIEVKGIP-ERRVFGR-GTLIRPLLKETKAQLIEYARKNELAWR 157
Query: 260 EDPTNRSPLFVRNRIRMSL 278
ED TN+ ++RNRIR +
Sbjct: 158 EDATNQEVTYLRNRIRHEI 176
>gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
Length = 418
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESEII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYKLQLEETK--WDTPHPANG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262
AE +++L R+ V + + + I +S +L+ + ++ D
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDY 173
Query: 263 TNRSPLFVRNRIR 275
TN+ +RNR+R
Sbjct: 174 TNQENETLRNRLR 186
>gi|225027805|ref|ZP_03716997.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353]
gi|224954855|gb|EEG36064.1| tRNA(Ile)-lysidine synthetase [Eubacterium hallii DSM 3353]
Length = 513
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 27/247 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I LG+SGG DS+ L F EA L A+ ++H LR EE+K + V
Sbjct: 25 ILLGISGGADSVCLARY--------FLARREALSL--KLYAVHINHMLRGEEAKRDEEFV 74
Query: 144 SHRVSDMGIRCEI-VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + R + R K+ +EA R RY F+K ++ G + +AHH +
Sbjct: 75 QDFCHKWNLSLNVEYRNIKEESRQKKCSEEEAGRIARYECFEKYAKEYHCGKIAVAHHQN 134
Query: 203 DQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261
D AE + R+ R +G G+AG + + +I + C L I+ I Q +++V+D
Sbjct: 135 DAAETILFRMLRGTGPQGMAGILPVNGKIIRPFL--C---LSREEIMDILQNIGQNYVDD 189
Query: 262 PTNRSPLFVRNRIR------MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEA 315
TN + + RN IR M + + + SEL + + +YV L NE
Sbjct: 190 STNTNEEYSRNYIRHRILPEMEHVNQKAAAHISELGMQM---QELLAYVTPQMEKLYNEN 246
Query: 316 VTVMDQG 322
V +QG
Sbjct: 247 VIANEQG 253
>gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
Length = 442
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 79 LKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
LK + ++ + SGGPDS+ L C+ F + E L + V+H LRE++
Sbjct: 20 LKKNDKVLIAFSGGPDSVFLFHCI--------NFFRESLGLE----LELVYVNHKLREDA 67
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ V +R I D + ++ +EA R+ RYR+F + ++ I +
Sbjct: 68 DEDIKFVKEFAEKYEVRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKI 127
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255
H+ DD E FI RL R + + GL G+ D IL + G +
Sbjct: 128 ATGHNLDDNIETFIFRLLRGTALNGLKGIPVKRGAIIRPILEFRKDY----ILEVLDGAD 183
Query: 256 RDWVEDPTNRSPLFVRNRIR 275
++ D TN + RN+IR
Sbjct: 184 EEYRLDSTNFETKYTRNKIR 203
>gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
Length = 436
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ- 229
+Q AAR++RY F ++ + LL AHHADD E FI+ L+R +G+ GL G+ +
Sbjct: 95 IQVAARELRYSWFYELLEEKHFDYLLTAHHADDNLETFIINLTRGTGLDGLTGIPEQNDK 154
Query: 230 -IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 288
I +S + IL Q N +W ED +N S +VRN+IR L + K
Sbjct: 155 IIRPLLPFSREE------ILKYAQENNIEWREDSSNASTKYVRNKIRHDLVPV----LKQ 204
Query: 289 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYA 324
+ A ++T+S+++ ++ +A V+ Q A
Sbjct: 205 INPNFLDAFQKTQSFLQE-SKEMVEDASIVIYQQVA 239
>gi|404406224|ref|ZP_10997808.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. JC136]
Length = 447
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 33/277 (11%)
Query: 68 EAFSRRMAMAGLKPHH-RIALGVSGGPDSMALCVLTA--GWKTGGFNQNGEAGEFIDGLL 124
E F R + L H RI L VSGG DSM + L G+ G + N +
Sbjct: 5 ETFQRYIDENNLASHDDRILLTVSGGVDSMVMLSLFTRCGYSVGVAHCNFQ--------- 55
Query: 125 AITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRL 182
LR ES E+ +V G+ R + + G ++ AAR +RY
Sbjct: 56 -------LRGTESDEDEVLVEEEARKYGVEFYNRRFETTAEMERTGESMEMAARRLRYAW 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-SQIFSSYAYSCHDD 241
F + +H + IAHHADD E F + L R +G+ GL G++ +I ++ D
Sbjct: 109 FDALSREHGYTAVAIAHHADDSIETFFINLLRGTGLRGLTGISTQVGKIIRPLLFASRKD 168
Query: 242 LKNHSILLICQGGNR-DWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISAC 297
+ +++ NR + ED +NRS ++RN+IR+ L + F S + ++
Sbjct: 169 ILEYAV------QNRIPFREDSSNRSTKYLRNKIRLGLIPRIREINPKFTSLMSRNLARL 222
Query: 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS 334
+ ++ H + +EAVT D G I L+ L+P+
Sbjct: 223 TDAQLFINHGIERIRSEAVT-SDTGIDTIHLDRLDPA 258
>gi|377831060|ref|ZP_09814048.1| hypothetical protein LBLM1_03100 [Lactobacillus mucosae LM1]
gi|377555157|gb|EHT16848.1| hypothetical protein LBLM1_03100 [Lactobacillus mucosae LM1]
Length = 466
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSM L + Q + G L+ V+H LR++S++E +
Sbjct: 33 LVVAVSGGVDSMVLLDV--------MQQLVDPGR----LIVAHVNHELRKQSQQEEAFLK 80
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ VR + P+ G +++AAR MRYR F + HQ LL AHHA+DQ
Sbjct: 81 SYCQKHQLKL-AVRHWPIKEHPQTG-IEDAARTMRYRFFAQTMHAHQADFLLTAHHANDQ 138
Query: 205 AELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVE 260
AE ++++ R + LAG+ F+ + + D + W E
Sbjct: 139 AETMLMKMVRGGQLTALAGIEDERPFAGKTLLRPLLTIPKD----RLYEYANMHQLTWFE 194
Query: 261 DPTNRSPLFVRNRIR 275
D TN+ RNR R
Sbjct: 195 DNTNQDLALTRNRFR 209
>gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
Length = 318
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 91/225 (40%), Gaps = 31/225 (13%)
Query: 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGE 118
YL K EAF + L LG SGG DS+ L + K
Sbjct: 5 YLLKNDKRLEAF-----FSSLDRKKSYLLGFSGGSDSLFLFYVLKSLKIN---------- 49
Query: 119 FIDGLLAITVDHGLREESKEEANIVS---HR--VSDMGIRCEIVRCDWLDGRPKQGHLQE 173
A+ VDHG RE S+EEA + HR +S +G R D L+
Sbjct: 50 ----FTAVHVDHGWRECSREEAKALKEFCHREKISYIGHRLSPEEKGERD-------LEN 98
Query: 174 AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233
AAR RY F ++C+Q + +AHHA+DQAE + R+ + + L GM SS
Sbjct: 99 AARKARYAFFYQLCVQQNFSGVFLAHHANDQAETLLKRVLEGAHLSNLKGMTVSSFYQGM 158
Query: 234 YAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ ++ + ++ D TN ++R R+R L
Sbjct: 159 QLLRPLLHIPKARLMSLLHREKISYISDETNEDERYLRARMRKKL 203
>gi|416239558|ref|ZP_11632031.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
Length = 451
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL----- 249
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 250 ------ICQGGNRD---WVEDPTNRSPLFVRNRIRMSL 278
I Q N +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|374703819|ref|ZP_09710689.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. S9]
Length = 450
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 58 EYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAG 117
+ L ++ +R+A + R+A +G + SGG DS L + A Q
Sbjct: 6 KVLENIAPWRKAPAWRVAFSGGLQATAWRVAFSGGLDSSVLLHILAT-----LAQR---- 56
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E I L A+ + HGL+ +G+ ++R G L+ AARD
Sbjct: 57 EAIPSLFAVHIHHGLQPAGDLWPEHCQQFCDQLGVPLSVLRVKVEPG----ASLERAARD 112
Query: 178 MRYRLFQ-KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS--------- 227
RY+ F ++C +L++A HADDQAE + RL R +GV GLA M
Sbjct: 113 ARYKAFTAQLCAGE---LLMVAQHADDQAETLMFRLLRGAGVRGLAAMPICRPLGQGQLL 169
Query: 228 SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + HD H + WVEDP+N RN +R
Sbjct: 170 RPLLNCSRAEVHDYANQHGL---------QWVEDPSNSDEQLSRNYLR 208
>gi|422883026|ref|ZP_16929475.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
Length = 425
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 29/260 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ E L
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLVAVSGGLDSMTLLQLLIDYQK----------ELAIELAI 52
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQ 184
V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 53 AHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFG 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
V + L+ AHHADDQAE +RL R + + L+GM + ++C + ++
Sbjct: 105 NVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQYFACGELIRP 158
Query: 245 HSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRTR 301
+ ED +N ++RNRIR + L DL + FK L+ + +
Sbjct: 159 LLTFHKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDLQ 218
Query: 302 SYVEHVCSNLINEAVTVMDQ 321
+ + H+ +L E V V Q
Sbjct: 219 TALSHLTRDLDIENVQVFHQ 238
>gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
Length = 456
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 27/210 (12%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL--AITVDHGLR 133
A L H + +G SGG DS L L + +FI L+ AI + HGL
Sbjct: 16 FAQLGGHRHVLVGFSGGLDSSVLLHLLVCLRD----------QFIPELMIRAIHIHHGLN 65
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + G+ E+VR +D R ++ AAR+ RY+ F ++
Sbjct: 66 PRADSWVKHCQQQCEQWGVALEVVRVT-IDTR--DSGIEAAARNARYQAFASHLATNE-- 120
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS-----SQIFSSYAYSCHDDLKNHSIL 248
VLL A H DDQ E F+L L R SG GL+ MA SQ+ + L+N++
Sbjct: 121 VLLTAQHLDDQCETFLLALKRGSGPAGLSAMAAKRPFAHSQLLRPLLAFSRETLENYA-- 178
Query: 249 LICQGGNRDWVEDPTNRSPLFVRNRIRMSL 278
+ W+ED +N+ F RN +R+ +
Sbjct: 179 ---RAQQLQWIEDDSNQDDRFDRNFLRLRI 205
>gi|420263431|ref|ZP_14766068.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus sp. C1]
gi|394769388|gb|EJF49244.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus sp. C1]
Length = 466
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 12/195 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R L VS G DSM L + F Q + V+H LR S EEA +
Sbjct: 20 RFLLAVSTGVDSMVLLQV--------FCQLFPEMQKEQVFGVAHVNHQLRPASAEEAAFL 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI RC W + P + ++ +ARD RY F V + VLL AHH+DD
Sbjct: 72 RQYCQERGIPF-YERC-WEN--PPETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
Q E ++++ R + GM + + +I Q + ED +
Sbjct: 128 QVETMLMKMMREGRLQSAGGMQQQQPFHAGILLRPLLSVSKTAIYDYAQVQQIPYFEDES 187
Query: 264 NRSPLFVRNRIRMSL 278
N PL++RNR+R +
Sbjct: 188 NHEPLYLRNRLRQQV 202
>gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
19061]
gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
19061]
Length = 443
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 13/214 (6%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ +I LG SGG DS L L T +++ L AI + HGL ++
Sbjct: 19 YKKILLGFSGGLDSTVLLHLL----TRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVE 74
Query: 142 IVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+D + R E VR D +Q ++ AAR+ RY+ FQ++ +I L+ A
Sbjct: 75 HCRQMCADWKVDFRTEKVRLD-----IRQNGIEAAAREARYQSFQQMLQPDEI--LITAQ 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259
H DDQAE F+L L R SG GL+ M + ++ + + +G +W+
Sbjct: 128 HLDDQAETFLLALKRGSGPAGLSSMPSRMPFSGTTLIRPLLNVSRAELEVYARGKELEWI 187
Query: 260 EDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAV 293
ED +N+ + RN +R+ + L + + QAV
Sbjct: 188 EDDSNQDDRYDRNFLRLRIMPLLNQRWPHFPQAV 221
>gi|422872080|ref|ZP_16918573.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
Length = 425
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + +++C + ++
Sbjct: 104 GKVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGELIR 157
Query: 244 NHSILLICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRRT 300
+ ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 158 PLLTFRKSDFPDIQHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIEDW 217
Query: 301 RSYVEHVCSNLINEAVTVMDQ 321
++ + H+ +L E V V Q
Sbjct: 218 QTALSHLTRDLDIENVQVFHQ 238
>gi|239906277|ref|YP_002953017.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
gi|239796142|dbj|BAH75131.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
Length = 330
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 99/240 (41%), Gaps = 21/240 (8%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDS+AL + A + + G AG LLA +DHGLR ES EA V
Sbjct: 23 SGGPDSVALLAMAAILR----ERLGLAG-----LLAAHLDHGLRPESGTEAEAVGALCRK 73
Query: 150 MGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
+G+ C R D R ++ +++A R R F +L H +D AE
Sbjct: 74 LGLGCLSDRADVAAMARERRTGVEDAGRQARQAFFADCLAGRDNAWVLTGHQLNDLAEDQ 133
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPL 268
++R++R +G L GMA + G ++DP+N P
Sbjct: 134 LMRVTRGAGWPALGGMAALDPARRLLRPLLLTPRSAVTEFTAALG--LPTMDDPSNADPA 191
Query: 269 FVRNRIRMSLGDLSSCSFKSELQAVISACRRTR---SYVEHVCSNLINEAVTVMDQGYAV 325
++RNR+R L L L A R+ R +Y + V VTV D+G V
Sbjct: 192 YLRNRVRHGLLPLVLQENPRALDAAARLWRQARLDAAYFDEVLP------VTVPDEGGTV 245
>gi|339637639|emb|CCC16592.1| tRNA(Ile)-lysidine synthase [Lactobacillus pentosus IG1]
Length = 448
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A A L P + + VS G DSM L L L+
Sbjct: 5 QKFNRRLAAARLLSPQVTVVVAVSTGVDSMVLLQLLQQLPVTERPH----------LVVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + H + + ++ DW P+ G ++ A R RYR F K
Sbjct: 55 HVNHHLRAQSQTEAAYLQHYCQEHQLNLKL--ADWQATDHPEHG-VEAAGRQFRYRFFTK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A S D
Sbjct: 112 VMQATGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIADSRPFAGGQLVRPLLDWSKA 171
Query: 246 SILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+ + + ED TN+ RNR+R
Sbjct: 172 ELRDYAAQHDVTYFEDATNQDVQLTRNRVR 201
>gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
gi|189431712|gb|EDV00697.1| tRNA(Ile)-lysidine synthetase [Bacteroides coprocola DSM 17136]
Length = 426
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 35/241 (14%)
Query: 84 RIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
+I + +SGG DS+AL +L G+ +A + LR EES +
Sbjct: 21 KILVALSGGADSVALLRVLLLEGYNC----------------VAAHCNFHLRGEESDRDE 64
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + + + +++ D +G K+ ++ AAR++RY F++V +Q V+ +A
Sbjct: 65 EFVQNLCRGLDVPLQVIHFD-TNGYASRKRISIEMAARELRYEWFEQVRLQVGASVIAVA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257
HH DD E F+L L R +G+ GL G+ A + ++ DD IL +D
Sbjct: 124 HHRDDSVETFLLNLVRGTGINGLKGIAAVNGKVVRPLLDVSRDD-----ILAFLADLKQD 178
Query: 258 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT-------RSYVEHVCSN 310
+V D TN ++RN++R+++ L S +++ RR R ++ VC+
Sbjct: 179 YVTDSTNLEDEYLRNKLRLNVIPLLKEINPSVCESITETARRLSDVEAVYRKSIQTVCTE 238
Query: 311 L 311
+
Sbjct: 239 V 239
>gi|18311454|ref|NP_563388.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens str. 13]
gi|61216685|sp|Q8XHL1.1|TILS_CLOPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|18146138|dbj|BAB82178.1| probable cell-cycle protein [Clostridium perfringens str. 13]
Length = 469
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 25/237 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLREES- 136
+K ++ + +SGGPDS+ L + + E E + + A V+H LR ES
Sbjct: 15 IKSGDKVLVALSGGPDSVCLLHILS-----------ELRELLHIEVYAAHVNHCLRGESA 63
Query: 137 -KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGV 194
K+EA V ++ I+C + R D +Q E A R+ RY+ F+++ ++ +
Sbjct: 64 LKDEA-YVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLICQG 253
+ IAH+A+DQAE I+R R +G+ GL G+ IF L+ I C+
Sbjct: 123 IAIAHNANDQAETLIMRALRGTGIEGLVGIKPVRDGIFIRPILI----LRRKEIEEYCEI 178
Query: 254 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRSYVEH 306
N + D TN ++ RN+IR+ +F ++ A ++ +C + +++
Sbjct: 179 NNLNPRIDETNLEEIYSRNKIRLKAIPFIEDNFNPDIVATLNRLAYSCSKDVEFIQE 235
>gi|390166649|ref|ZP_10218908.1| cell cycle protein MesJ [Sphingobium indicum B90A]
gi|389590553|gb|EIM68542.1| cell cycle protein MesJ [Sphingobium indicum B90A]
Length = 314
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 74/144 (51%), Gaps = 23/144 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L A F + A TVDHGLRE S EA +V
Sbjct: 25 RFGVAVSGGPDSMALLDLAAR-------------AFPGRVEAATVDHGLREASAAEAAMV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ D GI + P+ +G++Q AR RY L ++ + LL AHH
Sbjct: 72 ADWCRDAGIAHATLH-------PQGAVRGNVQSWARAQRYALLEEWRAARGLDWLLTAHH 124
Query: 201 ADDQAELFILRLSRNSGVLGLAGM 224
ADDQ E ++RL+R +GV GLAG+
Sbjct: 125 ADDQLETLLMRLNRCAGVGGLAGV 148
>gi|365858782|ref|ZP_09398690.1| tRNA(Ile)-lysidine synthetase [Acetobacteraceae bacterium AT-5844]
gi|363713627|gb|EHL97224.1| tRNA(Ile)-lysidine synthetase [Acetobacteraceae bacterium AT-5844]
Length = 389
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 103/264 (39%), Gaps = 25/264 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
P R+A+GVSGGP S+AL L + W + GEA A+ VDHGLR S
Sbjct: 7 FGPAPRVAIGVSGGPHSLALMFLASEWAR---ARGGEA-------HALIVDHGLRPGSDA 56
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA + + G+ EI+ P +QE AR R C + LL+
Sbjct: 57 EAAWAACLLRAQGMPAEILTLS----LPPGAAVQERARAGRMAAMLGRCDALGLPWLLLG 112
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258
H DQAE + R R SG GLAGM+ ++ + + +
Sbjct: 113 QHRSDQAETVLFRALRGSGDAGLAGMSPVRAEAAALLLRPLLGVAPARLEALLTARGIVP 172
Query: 259 VEDPTNRSPLF------VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 312
+ DP+N P F LG ++ R +S E +
Sbjct: 173 LRDPSNTHPRFARARLRAALADADGLGPGIVALAEAGAAFGRRRARAAKSLTERLA---- 228
Query: 313 NEAVTVMDQGYAVIDLEILNPSKI 336
EAV + +GYA +D + L ++
Sbjct: 229 -EAVRLRPEGYAWLDAKALGTDRV 251
>gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESKIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNSLLVRPLL 163
Query: 241 DLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275
+L+ + ++ D TN+ +RNR+R
Sbjct: 164 SFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus casseliflavus ATCC 12755]
gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus casseliflavus ATCC 12755]
Length = 467
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 12/195 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R L VS G DSM L + F Q + V+H LR S EEA +
Sbjct: 21 RFLLAVSTGVDSMVLLQV--------FCQLFPEMQKEQVFGVAHVNHQLRPASAEEAAFL 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI RC W + P + ++ +ARD RY F V + VLL AHH+DD
Sbjct: 73 RQYCQERGIPF-YERC-WEN--PPETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDD 128
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263
Q E ++++ R + GM + + +I Q + ED +
Sbjct: 129 QVETMLMKMMREGRLQSAGGMQQQQPFHAGILLRPLLSVSKTAIYDYAQVQQIPYFEDES 188
Query: 264 NRSPLFVRNRIRMSL 278
N PL++RNR+R +
Sbjct: 189 NHEPLYLRNRLRQQV 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,976,844,906
Number of Sequences: 23463169
Number of extensions: 413774039
Number of successful extensions: 866339
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2735
Number of HSP's successfully gapped in prelim test: 1852
Number of HSP's that attempted gapping in prelim test: 856490
Number of HSP's gapped (non-prelim): 5602
length of query: 662
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 513
effective length of database: 8,863,183,186
effective search space: 4546812974418
effective search space used: 4546812974418
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)