Query 006087
Match_columns 662
No_of_seqs 325 out of 2234
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 18:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10660 tilS tRNA(Ile)-lysidi 100.0 1.7E-44 3.8E-49 396.7 29.9 283 79-388 12-304 (436)
2 PF01171 ATP_bind_3: PP-loop f 100.0 2.1E-44 4.6E-49 351.6 17.8 177 84-277 1-182 (182)
3 COG0037 MesJ tRNA(Ile)-lysidin 100.0 3.7E-38 8.1E-43 327.1 24.7 226 64-307 4-239 (298)
4 PRK10696 tRNA 2-thiocytidine b 100.0 4.4E-36 9.6E-41 309.0 23.3 216 64-298 10-240 (258)
5 TIGR02432 lysidine_TilS_N tRNA 100.0 2.2E-35 4.7E-40 288.0 19.2 182 84-280 1-189 (189)
6 cd01992 PP-ATPase N-terminal d 100.0 1.7E-32 3.6E-37 265.9 19.8 180 84-280 1-185 (185)
7 cd01993 Alpha_ANH_like_II This 100.0 4.5E-30 9.8E-35 247.8 15.3 171 84-267 1-183 (185)
8 PRK00074 guaA GMP synthase; Re 99.9 4.1E-24 8.9E-29 239.8 13.6 194 42-265 183-391 (511)
9 PRK00143 mnmA tRNA-specific 2- 99.9 1.9E-23 4.1E-28 224.2 15.0 167 84-272 2-196 (346)
10 cd01990 Alpha_ANH_like_I This 99.9 1.7E-22 3.6E-27 199.8 12.5 154 85-267 1-157 (202)
11 cd01998 tRNA_Me_trans tRNA met 99.9 1.8E-21 3.9E-26 209.2 14.1 168 84-270 1-195 (349)
12 cd01997 GMP_synthase_C The C-t 99.8 2E-20 4.4E-25 197.0 14.3 162 84-266 1-178 (295)
13 PRK14665 mnmA tRNA-specific 2- 99.8 3E-20 6.5E-25 200.5 14.5 174 78-270 1-195 (360)
14 TIGR00268 conserved hypothetic 99.8 6.1E-20 1.3E-24 188.9 14.8 157 81-267 11-169 (252)
15 TIGR00884 guaA_Cterm GMP synth 99.8 9.9E-20 2.1E-24 193.1 15.7 155 83-262 17-188 (311)
16 PRK00919 GMP synthase subunit 99.8 1E-18 2.2E-23 184.9 17.5 167 63-259 4-180 (307)
17 PRK08349 hypothetical protein; 99.8 2.3E-18 5.1E-23 170.9 16.0 149 84-259 2-161 (198)
18 TIGR00420 trmU tRNA (5-methyla 99.8 1.4E-18 3.1E-23 187.2 13.7 169 83-270 1-198 (352)
19 cd01712 ThiI ThiI is required 99.8 5.2E-18 1.1E-22 164.9 15.8 152 84-261 1-161 (177)
20 cd01713 PAPS_reductase This do 99.8 5.4E-18 1.2E-22 159.5 12.7 152 84-259 1-162 (173)
21 PRK14664 tRNA-specific 2-thiou 99.7 4.4E-18 9.5E-23 183.7 11.6 171 78-270 1-190 (362)
22 PRK13820 argininosuccinate syn 99.7 2E-17 4.4E-22 180.1 15.8 150 82-263 2-168 (394)
23 PRK14561 hypothetical protein; 99.7 2.2E-17 4.9E-22 164.1 10.8 161 84-278 2-170 (194)
24 PLN02347 GMP synthetase 99.7 2.6E-16 5.6E-21 177.7 15.4 187 42-257 196-404 (536)
25 cd01986 Alpha_ANH_like Adenine 99.7 2.2E-16 4.7E-21 140.9 10.0 83 85-213 1-83 (103)
26 TIGR00342 thiazole biosynthesi 99.7 9.1E-16 2E-20 166.5 15.3 159 81-266 171-339 (371)
27 COG1606 ATP-utilizing enzymes 99.7 2E-15 4.3E-20 154.1 15.8 158 82-268 17-176 (269)
28 PF03054 tRNA_Me_trans: tRNA m 99.7 1.6E-16 3.5E-21 171.2 8.0 171 83-270 1-199 (356)
29 cd01995 ExsB ExsB is a transcr 99.6 6E-15 1.3E-19 142.1 12.8 143 84-267 1-149 (169)
30 TIGR00552 nadE NAD+ synthetase 99.6 1.6E-14 3.5E-19 148.6 15.6 168 64-266 7-187 (250)
31 TIGR00364 exsB protein. This p 99.6 5.5E-15 1.2E-19 146.8 11.7 149 85-258 1-178 (201)
32 PRK08384 thiamine biosynthesis 99.6 2.1E-14 4.5E-19 156.3 15.3 151 82-263 180-345 (381)
33 TIGR00032 argG argininosuccina 99.6 1.8E-14 3.8E-19 157.5 13.9 151 84-264 1-168 (394)
34 COG0482 TrmU Predicted tRNA(5- 99.6 1.9E-14 4.1E-19 154.1 12.8 171 82-269 3-196 (356)
35 PRK00509 argininosuccinate syn 99.5 5.8E-14 1.2E-18 153.4 13.8 151 83-263 3-171 (399)
36 COG0519 GuaA GMP synthase, PP- 99.5 4.2E-14 9E-19 145.8 10.9 164 63-258 8-185 (315)
37 KOG2840 Uncharacterized conser 99.5 3.5E-14 7.6E-19 148.9 10.2 199 76-283 45-258 (347)
38 PRK01565 thiamine biosynthesis 99.5 5.6E-14 1.2E-18 153.7 12.2 159 81-266 175-343 (394)
39 PRK05253 sulfate adenylyltrans 99.5 1.5E-12 3.3E-17 137.9 16.9 158 83-261 28-208 (301)
40 cd01996 Alpha_ANH_like_III Thi 99.5 1.8E-13 3.8E-18 129.7 8.7 105 84-204 3-115 (154)
41 PLN00200 argininosuccinate syn 99.4 7.8E-13 1.7E-17 144.8 13.1 153 83-264 6-176 (404)
42 PRK04527 argininosuccinate syn 99.4 4.1E-13 8.9E-18 146.5 10.8 156 82-266 2-176 (400)
43 cd01999 Argininosuccinate_Synt 99.4 2.1E-12 4.5E-17 141.0 13.0 149 85-261 1-166 (385)
44 PRK01269 tRNA s(4)U8 sulfurtra 99.4 1.9E-12 4E-17 145.2 12.3 158 82-265 177-342 (482)
45 PRK11106 queuosine biosynthesi 99.3 1.3E-11 2.7E-16 126.5 14.5 147 83-258 2-180 (231)
46 PRK13980 NAD synthetase; Provi 99.3 2.3E-11 4.9E-16 126.5 16.1 170 62-266 9-191 (265)
47 PRK08576 hypothetical protein; 99.3 1.2E-11 2.6E-16 136.8 14.3 151 83-259 235-388 (438)
48 cd00553 NAD_synthase NAD+ synt 99.3 1.6E-11 3.5E-16 126.2 13.3 158 66-258 10-179 (248)
49 TIGR03573 WbuX N-acetyl sugar 99.3 9.5E-12 2.1E-16 133.9 11.7 142 46-202 21-171 (343)
50 KOG2805 tRNA (5-methylaminomet 99.2 2.6E-11 5.6E-16 126.8 9.4 173 81-270 4-205 (377)
51 TIGR02039 CysD sulfate adenyly 99.2 2.9E-10 6.3E-15 120.2 17.2 159 84-259 21-198 (294)
52 PF06508 QueC: Queuosine biosy 99.2 1.2E-10 2.5E-15 117.7 11.3 157 84-265 1-184 (209)
53 cd01984 AANH_like Adenine nucl 99.2 4.4E-11 9.6E-16 102.7 7.0 74 85-217 1-74 (86)
54 PRK02090 phosphoadenosine phos 99.1 4.5E-10 9.7E-15 115.4 13.4 145 83-259 41-195 (241)
55 PTZ00323 NAD+ synthase; Provis 99.1 4.9E-09 1.1E-13 111.1 16.9 161 82-268 46-224 (294)
56 COG0603 Predicted PP-loop supe 99.0 2.6E-09 5.6E-14 108.5 12.3 153 83-265 3-187 (222)
57 KOG1622 GMP synthase [Nucleoti 99.0 1.3E-09 2.8E-14 118.6 10.1 187 42-258 198-406 (552)
58 PF02568 ThiI: Thiamine biosyn 98.9 9.1E-09 2E-13 103.3 11.5 149 82-256 3-161 (197)
59 PRK12563 sulfate adenylyltrans 98.9 2.3E-08 5E-13 106.5 15.0 160 83-259 38-216 (312)
60 cd01994 Alpha_ANH_like_IV This 98.9 4.3E-08 9.2E-13 98.1 14.2 142 84-264 1-146 (194)
61 PF01507 PAPS_reduct: Phosphoa 98.7 2.7E-08 5.9E-13 95.0 8.6 148 84-258 1-155 (174)
62 cd01991 Asn_Synthase_B_C The C 98.7 3.6E-08 7.9E-13 101.0 7.2 112 79-205 12-130 (269)
63 PF02540 NAD_synthase: NAD syn 98.6 4E-07 8.8E-12 94.0 14.0 158 65-257 4-169 (242)
64 PRK02628 nadE NAD synthetase; 98.6 6.9E-07 1.5E-11 104.6 15.6 121 81-215 360-495 (679)
65 PRK05370 argininosuccinate syn 98.6 4.5E-07 9.8E-12 100.2 12.3 155 79-261 8-186 (447)
66 TIGR03679 arCOG00187 arCOG0018 98.5 9.3E-07 2E-11 89.9 12.8 139 86-264 1-144 (218)
67 TIGR00434 cysH phosophoadenyly 98.5 2.3E-06 5E-11 86.0 13.9 148 83-258 14-169 (212)
68 PRK08557 hypothetical protein; 98.5 2.5E-06 5.3E-11 94.7 15.2 149 82-258 181-338 (417)
69 COG0137 ArgG Argininosuccinate 98.5 1.7E-06 3.7E-11 93.7 13.4 156 82-266 4-177 (403)
70 PRK13794 hypothetical protein; 98.5 2.7E-06 5.8E-11 96.0 15.5 149 82-258 247-404 (479)
71 PF00764 Arginosuc_synth: Argi 98.4 9.5E-07 2.1E-11 96.8 11.1 146 86-262 1-165 (388)
72 PRK13795 hypothetical protein; 98.4 2.3E-06 5E-11 99.5 14.8 150 82-259 243-401 (636)
73 PF00733 Asn_synthase: Asparag 98.4 9.3E-07 2E-11 88.7 9.4 125 65-205 1-134 (255)
74 PRK00876 nadE NAD synthetase; 98.3 1.1E-05 2.4E-10 86.9 15.3 80 66-161 19-98 (326)
75 TIGR02057 PAPS_reductase phosp 98.3 6.6E-06 1.4E-10 84.2 12.8 150 82-258 25-184 (226)
76 KOG2594 Uncharacterized conser 98.3 8.8E-06 1.9E-10 87.2 13.3 187 62-258 35-265 (396)
77 TIGR01536 asn_synth_AEB aspara 98.3 2.2E-06 4.9E-11 95.8 9.4 127 64-204 236-369 (467)
78 COG0175 CysH 3'-phosphoadenosi 98.1 2.5E-05 5.4E-10 81.7 11.3 149 83-258 40-196 (261)
79 PRK13981 NAD synthetase; Provi 98.1 3E-05 6.5E-10 88.6 12.4 125 63-201 260-397 (540)
80 COG0301 ThiI Thiamine biosynth 97.8 0.00013 2.9E-09 80.0 11.5 145 82-255 175-331 (383)
81 COG1365 Predicted ATPase (PP-l 97.7 0.00017 3.8E-09 73.0 10.2 140 83-258 61-204 (255)
82 PRK06850 hypothetical protein; 97.7 0.00056 1.2E-08 77.7 15.2 168 81-259 33-224 (507)
83 PRK00768 nadE NAD synthetase; 97.7 0.00026 5.6E-09 74.6 11.7 159 82-266 38-211 (268)
84 TIGR03183 DNA_S_dndC putative 97.6 0.00082 1.8E-08 75.4 14.0 168 82-259 13-205 (447)
85 COG2117 Predicted subunit of t 97.6 0.00019 4.2E-09 70.0 7.8 100 84-207 2-112 (198)
86 COG0171 NadE NAD synthase [Coe 97.6 0.00083 1.8E-08 70.8 12.7 158 68-257 14-185 (268)
87 PLN02549 asparagine synthase ( 97.5 0.00025 5.5E-09 82.0 8.0 130 63-204 207-348 (578)
88 TIGR00289 conserved hypothetic 97.5 0.0012 2.5E-08 67.9 11.7 107 84-218 2-112 (222)
89 KOG1706 Argininosuccinate synt 97.3 0.00059 1.3E-08 72.4 7.9 154 82-265 5-179 (412)
90 TIGR03108 eps_aminotran_1 exos 97.2 0.0018 3.8E-08 75.5 10.8 117 66-204 243-370 (628)
91 PTZ00077 asparagine synthetase 97.2 0.0012 2.7E-08 76.5 9.2 132 63-204 219-362 (586)
92 PRK09431 asnB asparagine synth 97.0 0.0019 4.1E-08 74.5 9.1 132 63-203 209-353 (554)
93 TIGR03104 trio_amidotrans aspa 97.0 0.0017 3.6E-08 75.4 8.5 119 66-204 245-376 (589)
94 TIGR02055 APS_reductase thiore 96.6 0.018 3.9E-07 57.5 11.1 137 92-258 2-148 (191)
95 COG0367 AsnB Asparagine syntha 96.6 0.011 2.5E-07 68.0 10.9 119 63-203 212-344 (542)
96 TIGR00290 MJ0570_dom MJ0570-re 96.6 0.044 9.6E-07 56.5 14.0 139 84-265 2-144 (223)
97 TIGR00424 APS_reduc 5'-adenyly 96.3 0.058 1.3E-06 61.2 13.6 152 82-258 115-279 (463)
98 COG3969 Predicted phosphoadeno 95.9 0.017 3.8E-07 62.4 6.8 59 80-149 25-83 (407)
99 TIGR00269 conserved hypothetic 95.8 0.027 5.8E-07 51.3 6.8 58 231-293 4-63 (104)
100 PF01902 ATP_bind_4: ATP-bindi 95.5 0.068 1.5E-06 54.9 9.3 107 84-217 2-111 (218)
101 PLN02309 5'-adenylylsulfate re 95.4 0.18 4E-06 57.1 13.2 152 82-258 110-274 (457)
102 cd01987 USP_OKCHK USP domain i 95.1 0.3 6.6E-06 43.9 11.1 102 84-216 1-106 (124)
103 PLN02339 NAD+ synthase (glutam 94.9 0.17 3.6E-06 60.3 11.3 78 82-160 348-448 (700)
104 COG2102 Predicted ATPases of P 94.0 0.95 2.1E-05 46.8 12.8 108 84-218 2-113 (223)
105 KOG0571 Asparagine synthase (g 92.7 0.93 2E-05 50.9 11.1 133 59-204 203-346 (543)
106 PRK10490 sensor protein KdpD; 92.7 0.81 1.8E-05 56.0 11.8 97 80-203 248-348 (895)
107 cd01988 Na_H_Antiporter_C The 91.7 2.3 4.9E-05 38.1 10.8 95 84-203 1-106 (132)
108 cd00293 USP_Like Usp: Universa 91.6 3.2 6.8E-05 36.2 11.3 95 84-204 1-106 (130)
109 COG2205 KdpD Osmosensitive K+ 91.5 2.8 6.2E-05 50.5 13.9 109 81-216 247-364 (890)
110 cd01989 STK_N The N-terminal d 87.1 5.5 0.00012 36.8 9.8 94 84-202 1-114 (146)
111 COG0788 PurU Formyltetrahydrof 86.7 10 0.00023 40.4 12.4 146 18-201 20-176 (287)
112 PF02677 DUF208: Uncharacteriz 84.1 13 0.00029 37.3 11.3 118 86-217 2-135 (176)
113 TIGR00655 PurU formyltetrahydr 83.5 13 0.00027 39.9 11.7 116 60-208 54-177 (280)
114 KOG0573 Asparagine synthase [A 82.7 2.2 4.7E-05 48.2 5.7 25 83-107 251-275 (520)
115 COG1636 Uncharacterized protei 82.4 16 0.00034 37.3 11.0 103 82-198 3-117 (204)
116 PRK09982 universal stress prot 81.2 14 0.0003 34.5 9.9 37 83-129 4-40 (142)
117 PRK10116 universal stress prot 80.6 24 0.00052 32.3 11.1 101 83-208 4-119 (142)
118 PRK15118 universal stress glob 80.6 16 0.00036 33.6 10.1 94 83-201 4-113 (144)
119 PRK13010 purU formyltetrahydro 78.4 20 0.00043 38.6 11.1 117 59-208 63-186 (289)
120 PRK06027 purU formyltetrahydro 76.4 28 0.0006 37.3 11.5 112 58-202 58-176 (286)
121 PRK13011 formyltetrahydrofolat 74.3 39 0.00084 36.3 11.9 119 57-208 57-182 (286)
122 PRK15005 universal stress prot 70.8 18 0.00038 33.2 7.4 21 182-202 98-118 (144)
123 PF00582 Usp: Universal stress 64.8 16 0.00035 31.9 5.7 95 83-202 3-113 (140)
124 PRK15456 universal stress prot 63.6 81 0.0018 29.0 10.4 20 183-202 97-116 (142)
125 PRK11175 universal stress prot 59.2 72 0.0016 33.2 10.2 101 83-208 4-124 (305)
126 KOG2316 Predicted ATPase (PP-l 57.9 99 0.0022 32.5 10.4 102 84-207 2-123 (277)
127 PRK11175 universal stress prot 55.6 58 0.0013 33.9 8.8 47 142-203 227-273 (305)
128 PTZ00285 glucosamine-6-phospha 52.8 1.2E+02 0.0026 31.6 10.5 112 70-198 20-137 (253)
129 PRK12652 putative monovalent c 51.3 1.9E+02 0.0041 32.2 12.2 105 82-202 5-124 (357)
130 PF11734 TilS_C: TilS substrat 49.7 11 0.00023 32.1 1.8 32 627-660 22-53 (74)
131 PLN02828 formyltetrahydrofolat 49.6 1.4E+02 0.003 32.0 10.4 81 62-158 40-130 (268)
132 cd05565 PTS_IIB_lactose PTS_II 43.8 53 0.0011 29.9 5.4 67 84-158 2-79 (99)
133 KOG0189 Phosphoadenosine phosp 41.9 55 0.0012 34.0 5.7 103 82-202 46-160 (261)
134 PRK06852 aldolase; Validated 40.5 1.9E+02 0.0042 31.5 10.0 107 82-200 92-210 (304)
135 PRK00443 nagB glucosamine-6-ph 38.9 2.2E+02 0.0047 29.4 9.8 68 82-157 32-104 (261)
136 PRK08227 autoinducer 2 aldolas 38.4 1.1E+02 0.0024 32.6 7.6 99 82-200 74-180 (264)
137 PRK05647 purN phosphoribosylgl 36.6 1.4E+02 0.0031 30.2 7.8 90 83-202 2-91 (200)
138 TIGR00853 pts-lac PTS system, 36.2 75 0.0016 28.5 5.1 69 83-159 4-83 (95)
139 PRK11070 ssDNA exonuclease Rec 35.3 3.3E+02 0.0071 32.4 11.5 108 62-202 54-162 (575)
140 PF02441 Flavoprotein: Flavopr 34.4 49 0.0011 30.7 3.8 27 83-109 1-27 (129)
141 COG0541 Ffh Signal recognition 33.8 3.6E+02 0.0079 31.1 11.0 99 85-211 104-202 (451)
142 TIGR00639 PurN phosphoribosylg 33.7 3.3E+02 0.0071 27.4 9.8 95 84-208 2-96 (190)
143 COG4586 ABC-type uncharacteriz 32.9 67 0.0014 35.0 4.9 38 170-207 186-223 (325)
144 COG0794 GutQ Predicted sugar p 32.4 83 0.0018 32.4 5.3 40 79-130 84-123 (202)
145 PRK07998 gatY putative fructos 30.7 4.8E+02 0.011 28.2 11.0 26 62-92 27-52 (283)
146 PF04748 Polysacc_deac_2: Dive 30.2 1.9E+02 0.004 29.8 7.5 116 61-206 71-189 (213)
147 PRK05920 aromatic acid decarbo 30.2 94 0.002 31.9 5.3 29 81-109 2-30 (204)
148 PRK09590 celB cellobiose phosp 30.1 1.6E+02 0.0034 27.1 6.2 70 83-160 2-84 (104)
149 cd01400 6PGL 6PGL: 6-Phosphogl 29.3 3.6E+02 0.0078 27.4 9.4 62 82-153 22-86 (219)
150 PF13481 AAA_25: AAA domain; P 28.3 1.3E+02 0.0028 29.1 5.7 63 137-201 126-189 (193)
151 TIGR00421 ubiX_pad polyprenyl 27.5 91 0.002 31.2 4.6 26 84-109 1-26 (181)
152 PRK07313 phosphopantothenoylcy 27.1 1E+02 0.0022 30.9 4.8 27 83-109 2-28 (182)
153 PRK08305 spoVFB dipicolinate s 26.9 1.3E+02 0.0027 30.9 5.5 29 81-109 4-33 (196)
154 TIGR02113 coaC_strep phosphopa 24.9 1.2E+02 0.0027 30.2 5.0 27 83-109 1-27 (177)
155 PLN02360 probable 6-phosphoglu 24.9 4.8E+02 0.01 27.6 9.6 46 79-133 38-84 (268)
156 PTZ00372 endonuclease 4-like p 24.6 5.8E+02 0.013 29.1 10.7 70 130-202 166-244 (413)
157 PRK06029 3-octaprenyl-4-hydrox 24.3 1.2E+02 0.0026 30.6 4.8 25 83-107 2-26 (185)
158 PRK12858 tagatose 1,6-diphosph 23.4 1E+03 0.023 26.3 12.5 36 122-157 121-162 (340)
159 PF00448 SRP54: SRP54-type pro 23.2 2.6E+02 0.0055 28.2 7.0 59 84-157 4-62 (196)
160 PLN02331 phosphoribosylglycina 23.2 3.9E+02 0.0086 27.4 8.4 89 84-202 1-89 (207)
161 COG2861 Uncharacterized protei 23.2 4.7E+02 0.01 27.9 8.9 113 59-202 101-217 (250)
162 PF10566 Glyco_hydro_97: Glyco 23.0 1E+02 0.0023 33.1 4.3 84 136-220 30-122 (273)
163 PRK02122 glucosamine-6-phospha 22.9 5.5E+02 0.012 31.0 10.6 106 79-198 55-165 (652)
164 TIGR03356 BGL beta-galactosida 22.9 1.1E+02 0.0024 34.7 4.6 58 145-202 61-118 (427)
165 PRK13390 acyl-CoA synthetase; 22.7 4.3E+02 0.0094 29.3 9.4 73 63-157 30-102 (501)
166 cd05564 PTS_IIB_chitobiose_lic 21.6 1.6E+02 0.0035 26.2 4.6 69 84-160 1-80 (96)
167 KOG3425 Uncharacterized conser 20.9 3.8E+02 0.0083 25.8 7.0 56 68-135 13-78 (128)
168 TIGR00521 coaBC_dfp phosphopan 20.9 1.5E+02 0.0033 33.3 5.2 29 81-109 2-30 (390)
169 COG3840 ThiQ ABC-type thiamine 20.6 1.3E+02 0.0028 31.2 4.1 68 136-206 103-195 (231)
No 1
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00 E-value=1.7e-44 Score=396.68 Aligned_cols=283 Identities=22% Similarity=0.273 Sum_probs=220.5
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEE
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~ 158 (662)
+.++++|+||||||+|||+|++++..+.... .| +++.|+|||||+|++|++++++|+++|+++|||+++.+
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-------~~--~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-------PG--VTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-------CC--CeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 6778999999999999999999998765221 12 37999999999999999999999999999999999998
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-----ccccc
Q 006087 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSS 233 (662)
Q Consensus 159 ~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-----~i~rP 233 (662)
+++. ....++|++||..||.+|.+.+.+. ++|+||||+|||+|||||||.||+|+.||+||++.. .++||
T Consensus 83 ~~~~---~~~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRP 157 (436)
T PRK10660 83 VQLD---QRGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRP 157 (436)
T ss_pred Eecc---CCCCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceecccCCCcEeCC
Confidence 7653 1235799999999999999999874 689999999999999999999999999999998742 36788
Q ss_pred cccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006087 234 YAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTRSYVEHVCSN 310 (662)
Q Consensus 234 lL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~l~~~~~~Le~~~~~ 310 (662)
++.+ +|+||..||+++|++|++||||+++.|.||+|||.+.|.. +|.+...+.++++.++++.+++++.++.
T Consensus 158 LL~~-----~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~~~l~~~~~~ 232 (436)
T PRK10660 158 LLAR-----SREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAE 232 (436)
T ss_pred CccC-----CHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 5789999999999999999999999999999999988876 6899999999999999999999998877
Q ss_pred HHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHc--CCCCCceeecceEEe
Q 006087 311 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT--FPCKTSLTAAGCYLC 388 (662)
Q Consensus 311 ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~~~~~R~~~l~~Ll~~lr~--~~~~~~~Tl~Gc~i~ 388 (662)
.+...... .+. +++..|.... ....++++...+.-. ....++...+..+++.+.. .+.+...+.+|+.+.
T Consensus 233 ~~~~~~~~--~~~--l~~~~l~~l~--~~~~~~ll~~~l~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 304 (436)
T PRK10660 233 DLAHLQTP--DGT--LSIDPLLAMS--DARRAAILRRWLAGQ--GAPMPSRDQLQRIWQEVALAREDAEPCLRLGAFEIR 304 (436)
T ss_pred HHHHhhcc--CCc--CcHHHHhhCC--HHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHhhccccCCeEEECCEEEE
Confidence 76654322 221 4444443322 222334444433321 1233444455555555422 123345677888864
No 2
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=100.00 E-value=2.1e-44 Score=351.56 Aligned_cols=177 Identities=40% Similarity=0.586 Sum_probs=144.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+||||||+|||+|++++..+.... + .++.|+|||||+|++|.+++++|+++|+++|||+++..+++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~--------~--~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN--------G--IKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT--------T--TEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc--------C--CCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-
Confidence 69999999999999999999886542 1 279999999999999999999999999999999999998872
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-----cccccccccc
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSC 238 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-----~i~rPlL~~~ 238 (662)
.....++|+.||..||++|.++|+++|+++|+||||+||++||+|||+.||+|+.||+||++.. .++||++.+
T Consensus 70 -~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~- 147 (182)
T PF01171_consen 70 -RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV- 147 (182)
T ss_dssp -CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS-
T ss_pred -ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhccccccccccCcccCCcchhC-
Confidence 2234578999999999999999999999999999999999999999999999999999999864 368888875
Q ss_pred ccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHh
Q 006087 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMS 277 (662)
Q Consensus 239 r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~ 277 (662)
++++|..||+++|+||++||||+++.|.||+||++
T Consensus 148 ----~k~ei~~~~~~~~i~~~~D~tN~~~~~~Rn~iR~~ 182 (182)
T PF01171_consen 148 ----SKDEIRAYAKENGIPYVEDPTNYDERYKRNRIRNE 182 (182)
T ss_dssp -----HHHHHHHHHHTT-SSBS-CCGGCTTSHHHHHHHT
T ss_pred ----CHHHHHHHHHHCCCcEEECcCCCCCcccHHHHhCc
Confidence 47899999999999999999999999999999985
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-38 Score=327.10 Aligned_cols=226 Identities=31% Similarity=0.393 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHH
Q 006087 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (662)
Q Consensus 64 ~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V 143 (662)
+.+...+.+.+...... +++|+||||||+||++||++|+++... .++.|+|||||+|++++.+++.+
T Consensus 4 ~~~~~~v~~~i~~~~~~-~~~ilVavSGGkDS~~ll~~L~~l~~~------------~~~~a~~Vd~~~~~~~~~~~~~~ 70 (298)
T COG0037 4 EKLERKVKRAIREFNLI-EYKILVAVSGGKDSLALLHLLKELGRR------------IEVEAVHVDHGLRGYSDQEAELV 70 (298)
T ss_pred HHHHHHHHHHHHhcccc-CCeEEEEeCCChHHHHHHHHHHHhccC------------ceEEEEEecCCCCCccchHHHHH
Confidence 45666777777776544 899999999999999999999876432 26899999999998888999999
Q ss_pred HHHHHHcCCeEEEEEcccccCCCC--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCc
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GL 221 (662)
+++|+.+|+++++.++........ ..++|..||.+||++|.+.|+++|+++|+||||+|||+||++||+.||++..++
T Consensus 71 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l 150 (298)
T COG0037 71 EKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGL 150 (298)
T ss_pred HHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHH
Confidence 999999999999988765443221 247999999999999999999999999999999999999999999999998888
Q ss_pred cccccccc------cccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc--CCCHHHHHHHH
Q 006087 222 AGMAFSSQ------IFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCSFKSELQAV 293 (662)
Q Consensus 222 aGM~~~~~------i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~--~~~f~~~L~~~ 293 (662)
.||++... ++||++. +++.||..||..+++||++|+||++..|.||++|+.+.|+. .|.+...+.+.
T Consensus 151 ~~~~~~~~~~~~~~~iRPL~~-----~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~p~~~~~~~~~ 225 (298)
T COG0037 151 RGMPPKRPFEGGLLIIRPLLY-----VREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEERPGLKFSLARA 225 (298)
T ss_pred hhCCcccccCCCCeeeeeccc-----CCHHHHHHHHHHcCCCEeecCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88887642 5677765 45789999999999999999999999999999999999987 57777766555
Q ss_pred HHHHHHHHHHHHHH
Q 006087 294 ISACRRTRSYVEHV 307 (662)
Q Consensus 294 a~~l~~~~~~Le~~ 307 (662)
.+.........+..
T Consensus 226 ~~~~~~~~~~~~~~ 239 (298)
T COG0037 226 FELLRELRLLLEKL 239 (298)
T ss_pred HHHhhhhHHhhhhh
Confidence 55454444444333
No 4
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=4.4e-36 Score=308.99 Aligned_cols=216 Identities=14% Similarity=0.177 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 64 TKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 64 ~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
+.+.++|.+.+..++ +.++++|+||+|||+|||+||+++++++... ++.+++.++|||||+++.+. +.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~--------~~~~~l~av~vd~g~~~~~~---~~ 78 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRA--------PINFELVAVNLDQKQPGFPE---HV 78 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC--------CCCeEEEEEEecCCCCCCCH---HH
Confidence 457778888888874 8999999999999999999999998875432 22347999999999986432 36
Q ss_pred HHHHHHHcCCeEEEEEcccccC----CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCC
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~----~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi 218 (662)
++++|+++|||+++++.++... .+...+.|..||.+||.+|.++|+++|+++|+||||+||++||+|||+.||+|+
T Consensus 79 ~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l 158 (258)
T PRK10696 79 LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKL 158 (258)
T ss_pred HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCcc
Confidence 7999999999999988664321 112236899999999999999999999999999999999999999999999864
Q ss_pred cCcccccccc-------ccccccccccccccCHHHHHHHHHhCCCCeeeCC-CCCCCchhHHHHHHhhhhcc--CCCHHH
Q 006087 219 LGLAGMAFSS-------QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP-TNRSPLFVRNRIRMSLGDLS--SCSFKS 288 (662)
Q Consensus 219 ~GLaGM~~~~-------~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDp-SN~d~~y~RNrIR~~L~~l~--~~~f~~ 288 (662)
.||++.. .++||++.+ +++||+.||+++|+||++++ ||+++.|.||++|+.|..+. +|++..
T Consensus 159 ---~~m~~~~~~~~~~i~iiRPLl~~-----~k~eI~~y~~~~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~~~P~~~~ 230 (258)
T PRK10696 159 ---KAMPPKLLSDDGKHIVIRPLAYV-----AEKDIIKFAEAKEFPIIPCNLCGSQENLQRQVVKEMLRDWEKEYPGRIE 230 (258)
T ss_pred ---cccCCeeecCCCceeEEecCccC-----CHHHHHHHHHHcCCCEeeCCCCCCCchhHHHHHHHHHHHHHHHCccHHH
Confidence 4555431 367888764 57899999999999999766 69999999999997665554 677877
Q ss_pred HHHHHHHHHH
Q 006087 289 ELQAVISACR 298 (662)
Q Consensus 289 ~L~~~a~~l~ 298 (662)
++.+......
T Consensus 231 ~i~~~~~~~~ 240 (258)
T PRK10696 231 TMFRALQNVV 240 (258)
T ss_pred HHHHHHhhcc
Confidence 7766655443
No 5
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=100.00 E-value=2.2e-35 Score=288.04 Aligned_cols=182 Identities=41% Similarity=0.537 Sum_probs=159.4
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
+|+||+|||+||++|+++++++.... | .++.++|||||+++++.++.+.++++|+.+|||+++.++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~--------~--~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL--------K--IRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc--------C--CCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 58999999999999999998765431 1 2689999999999888889999999999999999999887643
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc------cccccccc
Q 006087 164 GRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS------QIFSSYAY 236 (662)
Q Consensus 164 ~~~-~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~------~i~rPlL~ 236 (662)
..+ ...+.++.||..||..|.++|+++|+++|++|||+||++||++|++.+|.|..|+.||++.. .+++|++.
T Consensus 71 ~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 71 LAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 222 23478999999999999999999999999999999999999999999999999999997743 25777765
Q ss_pred ccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhh
Q 006087 237 SCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 280 (662)
Q Consensus 237 ~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~ 280 (662)
+.+.||++||+++|+||++||||++..|.||+||++|.|
T Consensus 151 -----~~k~ei~~~~~~~~lp~~~~~~~~~~~~~R~~~r~~~~p 189 (189)
T TIGR02432 151 -----ISKSEIEEYLKENGLPWFEDETNQDDKYLRNRIRHELLP 189 (189)
T ss_pred -----CCHHHHHHHHHHcCCCeeeCCCCCCCcccHHHHHHHhCC
Confidence 468999999999999999999999999999999999865
No 6
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=100.00 E-value=1.7e-32 Score=265.86 Aligned_cols=180 Identities=41% Similarity=0.593 Sum_probs=154.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
+|+||+|||+||++|+++++++.... + .++.++|||||++..+.++.+.++++|+.+||++++.....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~--------~--~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL--------G--LRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL-- 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc--------C--CcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc--
Confidence 58999999999999999998764321 1 26899999999987777899999999999999999873211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-----cccccccccc
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSSYAYSC 238 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-----~i~rPlL~~~ 238 (662)
......+.++.||..||+.|.++|+++|+++|+||||+||++||++|++.||.|..++.+++... .+++|++.
T Consensus 69 ~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~-- 146 (185)
T cd01992 69 APKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLG-- 146 (185)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCC--
Confidence 11223478999999999999999999999999999999999999999999999999998874322 35778775
Q ss_pred ccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhh
Q 006087 239 HDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 280 (662)
Q Consensus 239 r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~ 280 (662)
+.+.||.+||+++|++|+.||||++..|.||+||+.|.|
T Consensus 147 ---~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~~ 185 (185)
T cd01992 147 ---ITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHELLP 185 (185)
T ss_pred ---CCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHhhCC
Confidence 468899999999999999999999999999999999865
No 7
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.97 E-value=4.5e-30 Score=247.82 Aligned_cols=171 Identities=22% Similarity=0.245 Sum_probs=143.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
+|+||+|||+||++|+++++++.... +..+++.++|||||.+.++.++.++++++|+++|+++++++++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRY--------PYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhc--------CCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc
Confidence 58999999999999999998764321 1123789999999998777888999999999999999999876321
Q ss_pred ------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccc--c-c---ccc
Q 006087 164 ------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAF--S-S---QIF 231 (662)
Q Consensus 164 ------~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~--~-~---~i~ 231 (662)
..+...+.+..|+..||.+|.+.|+++|+++|++|||+||++||++|++.+|+|+.++.++.. . . .++
T Consensus 73 ~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~ii 152 (185)
T cd01993 73 TDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRI 152 (185)
T ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEE
Confidence 112234678899999999999999999999999999999999999999999999888888862 1 1 367
Q ss_pred cccccccccccCHHHHHHHHHhCCCCeeeCCCCCCC
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSP 267 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~ 267 (662)
||++.+ .+.||+.|++.+|+||++|+||++.
T Consensus 153 rPL~~~-----~k~eI~~~~~~~~l~~~~d~~~~~~ 183 (185)
T cd01993 153 RPLVYV-----REKEIVLYAELNGLPFVEEECPYAG 183 (185)
T ss_pred eecccC-----CHHHHHHHHHHcCCCcccCCCCCCC
Confidence 888764 5789999999999999999999864
No 8
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.91 E-value=4.1e-24 Score=239.84 Aligned_cols=194 Identities=18% Similarity=0.140 Sum_probs=140.2
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
+-|+..+|+|..+|+... -.++..+.+++.+ + +++|+||+|||+||+++++++++.. | .
T Consensus 183 ~nFl~~i~~~~~~~~~~~--~~~~~~~~l~~~v-----~-~~~vlva~SGGvDS~vll~ll~~~l--g-----------~ 241 (511)
T PRK00074 183 ENFVFDICGCKGDWTMEN--FIEEAIEEIREQV-----G-DKKVILGLSGGVDSSVAAVLLHKAI--G-----------D 241 (511)
T ss_pred HHHHHHhcCCCCCccHHH--HHHHHHHHHHHhc-----C-CCcEEEEeCCCccHHHHHHHHHHHh--C-----------C
Confidence 557888999999999332 2223333333322 2 3799999999999999999997642 2 1
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHH-HHHHHcCCeEEEEEcccccCCC--CCCCHHH---HHHHHHHHHHHHHHHHc-CCcc
Q 006087 122 GLLAITVDHGLREESKEEANIVS-HRVSDMGIRCEIVRCDWLDGRP--KQGHLQE---AARDMRYRLFQKVCIQH-QIGV 194 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~-~~c~kLGIp~~i~~~~~~~~~~--~~~niE~---~AR~~RY~~L~e~A~e~-G~d~ 194 (662)
++.|+|||||++.. .|.+.+. .+|+++||++++++++..+... ...+.+. .|....|.+|.++|+++ |+++
T Consensus 242 ~v~av~vd~g~~~~--~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~ 319 (511)
T PRK00074 242 QLTCVFVDHGLLRK--NEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKF 319 (511)
T ss_pred ceEEEEEeCCCCCH--HHHHHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCE
Confidence 68999999998642 3344445 5779999999999876532211 1123332 23444589999999999 9999
Q ss_pred cccccccChhhHHHHHHhhccCCCc---Ccccccccc--ccccccccccccccCHHHHHHHHHhCCCCe---eeCCCCC
Q 006087 195 LLIAHHADDQAELFILRLSRNSGVL---GLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDW---VEDPTNR 265 (662)
Q Consensus 195 LatGHhaDDqaET~LmrL~RGsGi~---GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w---~eDpSN~ 265 (662)
|++|||+||++||.+|+ ++++++ ++.||++.. ++++|++. +.|+||++||+++|+|| +.-|+..
T Consensus 320 latGhn~dD~~Et~~~~--~~~~ik~~~~l~Gl~~~~~~~ii~PL~~-----l~K~EIr~~a~~~gLp~~~~~~~p~p~ 391 (511)
T PRK00074 320 LAQGTLYPDVIESGGTK--KAATIKSHHNVGGLPEDMKLKLVEPLRE-----LFKDEVRKLGLELGLPEEIVYRHPFPG 391 (511)
T ss_pred EEECCCcchhhhhcCCC--CccccccccCccCcChhHhcccccchhh-----cCHHHHHHHHHHcCCCHHHhCCCCCCC
Confidence 99999999999999887 666664 678887643 46788775 46899999999999995 3446344
No 9
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.90 E-value=1.9e-23 Score=224.21 Aligned_cols=167 Identities=13% Similarity=0.162 Sum_probs=136.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC--------CcHHHHHHHHHHHHHcCCeEE
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRCE 155 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~--------eS~~Ea~~V~~~c~kLGIp~~ 155 (662)
+|+||+|||+||++++++|++ .|+ ++.++|+|++.+. .+.+|.+.++++|+++|||++
T Consensus 2 kVlValSGGvDSsvla~lL~~---~G~-----------~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~ 67 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKE---QGY-----------EVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHY 67 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHH---cCC-----------cEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEE
Confidence 799999999999999999864 232 6899999998653 267888999999999999999
Q ss_pred EEEcccccC------------CCCCCCHHHHH-HHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcC--
Q 006087 156 IVRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG-- 220 (662)
Q Consensus 156 i~~~~~~~~------------~~~~~niE~~A-R~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~G-- 220 (662)
++++...+. .....+.+..| |.+||.+|.++|+++|+++||||||+||++|| +|.||.+..+
T Consensus 68 vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kDq 144 (346)
T PRK00143 68 VVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKDQ 144 (346)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcCh
Confidence 998754221 11223566666 55899999999999999999999999999998 9999998887
Q ss_pred ---cccccccc--ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHH
Q 006087 221 ---LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRN 272 (662)
Q Consensus 221 ---LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RN 272 (662)
|.+|+... .+++|+.. ++|+||++||+++||+|.++|++++.+|..+
T Consensus 145 sy~l~~l~~~~l~~~i~PL~~-----~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~ 196 (346)
T PRK00143 145 SYFLYQLTQEQLAKLLFPLGE-----LTKPEVREIAEEAGLPVAKKKDSQGICFIGE 196 (346)
T ss_pred hhhhccCCHHHhcceeccCcc-----CCHHHHHHHHHHcCCCcCCCCCCCcccCCCc
Confidence 67776432 34556554 5789999999999999999999999888654
No 10
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.88 E-value=1.7e-22 Score=199.79 Aligned_cols=154 Identities=22% Similarity=0.239 Sum_probs=120.6
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc-
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD- 163 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~- 163 (662)
|+||+|||+||+++++++++.. + .++.++|||||.+ +.+|.+.++++|+++||++++++++...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~--~-----------~~v~~v~vd~g~~--~~~~~~~~~~~a~~lgi~~~~~~~~~~~~ 65 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL--G-----------DRVLAVTATSPLF--PRRELEEAKRLAKEIGIRHEVIETDELDD 65 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh--C-----------CcEEEEEeCCCCC--CHHHHHHHHHHHHHcCCcEEEEeCCcccc
Confidence 6899999999999999987531 1 1578999999987 4678899999999999999999876321
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccccc
Q 006087 164 --GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (662)
Q Consensus 164 --~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~ 241 (662)
......+.+..||..||.++.++|+++|+++|++|||+||++|+ ..|+..+.. ..+++|++.. .
T Consensus 66 ~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~----------~~~~~~~~~-~~iirPL~~~---~ 131 (202)
T cd01990 66 PEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDY----------RPGLKALRE-LGVRSPLAEA---G 131 (202)
T ss_pred HHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCccc----------ChHHHHHHH-cCCcCchhhc---C
Confidence 11112234568999999999999999999999999999999984 122222221 2367887731 2
Q ss_pred cCHHHHHHHHHhCCCCeeeCCCCCCC
Q 006087 242 LKNHSILLICQGGNRDWVEDPTNRSP 267 (662)
Q Consensus 242 i~k~eI~~ya~~~gI~w~eDpSN~d~ 267 (662)
++|.||+.||++.|++|++||+|.+.
T Consensus 132 ~~K~ei~~~a~~~gl~~~~~~~~~c~ 157 (202)
T cd01990 132 LGKAEIRELARELGLPTWDKPAMACL 157 (202)
T ss_pred CCHHHHHHHHHHcCCCCcCCCCcchH
Confidence 46899999999999999999999874
No 11
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.86 E-value=1.8e-21 Score=209.17 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=136.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-----C-CCcHHHHHHHHHHHHHcCCeEEEE
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-----R-EESKEEANIVSHRVSDMGIRCEIV 157 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-----R-~eS~~Ea~~V~~~c~kLGIp~~i~ 157 (662)
+|+||+|||+||+++++++++ .++ +++++|+|++. + ..+.+|.+.++++|+++|||++++
T Consensus 1 kVlValSGGvDSsvla~lL~~---~g~-----------~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vv 66 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE---QGY-----------EVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVV 66 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH---cCC-----------cEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 589999999999999999864 232 68899999875 2 246788899999999999999999
Q ss_pred EcccccC------------CCCCCCHHHHH-HHHHHHHHHHHHHHcCCcccccccccChhhHH-HHHHhhccCCCcC---
Q 006087 158 RCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL-FILRLSRNSGVLG--- 220 (662)
Q Consensus 158 ~~~~~~~------------~~~~~niE~~A-R~~RY~~L~e~A~e~G~d~LatGHhaDDqaET-~LmrL~RGsGi~G--- 220 (662)
+++..+. .....+.+..| |.+||.+|.++|+++|+++|+||||++|+.|+ ..++|.||.+..+
T Consensus 67 d~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqs 146 (349)
T cd01998 67 NFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQS 146 (349)
T ss_pred ECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcc
Confidence 8753211 11224567666 55799999999999999999999999999998 8899999988765
Q ss_pred --cccccccc--ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 221 --LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 221 --LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
|++|+... .+++|+.. ++|.||+.||+++|++..++|.+++.+|.
T Consensus 147 y~L~~~~~~~l~~ii~PL~~-----~~K~eVr~~A~~~gl~~~~k~~s~~iCFi 195 (349)
T cd01998 147 YFLSQLSQEQLSRLIFPLGD-----LTKPEVREIAKELGLPVAKKKDSQGICFI 195 (349)
T ss_pred eEeccCCHHHHhheeecCCC-----CCHHHHHHHHHHcCCCCCCCCCCCceEEe
Confidence 77886432 35566654 56899999999999999999999998875
No 12
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.84 E-value=2e-20 Score=196.98 Aligned_cols=162 Identities=19% Similarity=0.109 Sum_probs=123.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~ 162 (662)
+|+||+|||+||++|++++++.. | .++.|+|||||+.+ ..|.+.++++|+++|+ ++++++.+..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l--G-----------~~v~aV~vd~g~~~--~~E~~~~~~~~~~~g~i~~~vvd~~e~ 65 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI--G-----------DRLTCVFVDNGLLR--KNEAERVEELFSKLLGINLIVVDASER 65 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh--C-----------CcEEEEEecCCCCC--hHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 58999999999999999997632 2 16899999999864 3577889999999987 9999987653
Q ss_pred cCC--CCCCCHHHH---HHHHHHHHHHHHHHHcC-CcccccccccChhhHHHHHHhhccCCC---cCccccccc--cccc
Q 006087 163 DGR--PKQGHLQEA---ARDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSRNSGV---LGLAGMAFS--SQIF 231 (662)
Q Consensus 163 ~~~--~~~~niE~~---AR~~RY~~L~e~A~e~G-~d~LatGHhaDDqaET~LmrL~RGsGi---~GLaGM~~~--~~i~ 231 (662)
+.. ....+.+.. ++..+|+.|.+.|++.| +++|++|||+||++|+..++.. +..+ .++.||+.. .+++
T Consensus 66 fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~-~~~IKs~~n~~Gl~a~~~~~vi 144 (295)
T cd01997 66 FLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGS-ADTIKSHHNVGGLPEDMKLKLI 144 (295)
T ss_pred HHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccc-cccccccccccccchHhhCCcc
Confidence 221 112345554 45789999999999999 9999999999999999887654 2222 245566643 2467
Q ss_pred cccccccccccCHHHHHHHHHhCCCCe---eeCC-CCCC
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNRDW---VEDP-TNRS 266 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI~w---~eDp-SN~d 266 (662)
+|+.. +.|+||++++++.|+|+ +.-| +-..
T Consensus 145 ~PL~~-----l~K~EVR~lar~lGLp~~~~~~~Pfp~p~ 178 (295)
T cd01997 145 EPLRD-----LFKDEVRELGRELGLPEEIVERHPFPGPG 178 (295)
T ss_pred ccccc-----CcHHHHHHHHHHcCCCchhhCCCCCCCCc
Confidence 88775 56899999999999998 6667 4333
No 13
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.83 E-value=3e-20 Score=200.50 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=137.5
Q ss_pred CCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEE
Q 006087 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (662)
Q Consensus 78 ~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~ 157 (662)
+++++++|+||+|||+||+++++++++ .|+ +++++|+|++.+.++.++.+.++++|+++|||++++
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~---~G~-----------~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vv 66 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLE---AGY-----------EVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITY 66 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHH---cCC-----------eEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEE
Confidence 467889999999999999999999964 332 689999998766566778889999999999999998
Q ss_pred Eccccc-----------C-CCCCCCHHHHHHH-HHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcC----
Q 006087 158 RCDWLD-----------G-RPKQGHLQEAARD-MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG---- 220 (662)
Q Consensus 158 ~~~~~~-----------~-~~~~~niE~~AR~-~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~G---- 220 (662)
+++..+ + .....+.+..|+. +||.+|.++|+++|+++|+||||+.++.++-..+|.||.+...
T Consensus 67 d~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSy 146 (360)
T PRK14665 67 DARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSF 146 (360)
T ss_pred ecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceE
Confidence 875321 1 1223467877755 8999999999999999999999999887776777889887664
Q ss_pred -cccccccc--ccccccccccccccCHHHHHHHHHhCCC-CeeeCCCCCCCchh
Q 006087 221 -LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNR-DWVEDPTNRSPLFV 270 (662)
Q Consensus 221 -LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI-~w~eDpSN~d~~y~ 270 (662)
|+.++... .+++|+. .++|.||+++|++.|+ +..+.+..++.+|.
T Consensus 147 fL~~l~~~~l~~~ifPLg-----~~~K~eVr~~A~~~gl~~~a~k~eSq~iCF~ 195 (360)
T PRK14665 147 FLWGLRQEILQRMLLPMG-----GMTKSEARAYAAERGFEKVAKKRDSLGVCFC 195 (360)
T ss_pred EecCCCHHHHhheeccCc-----CCCHHHHHHHHHHCCCCccCcCCCCCccccC
Confidence 55555321 2445554 4578999999999997 56788888888875
No 14
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.83 E-value=6.1e-20 Score=188.93 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=121.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcc
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
+.++|+||+|||+||++|++++++. |. ++.++|+|++.. +.+|.+.++++|+++||++++++++
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~---g~-----------~v~av~~~~~~~--~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA---GT-----------EVLAITVVSPSI--SPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh---CC-----------CEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 3588999999999999999998753 32 688999999754 3457788999999999999999876
Q ss_pred ccc--CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccccccc
Q 006087 161 WLD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (662)
Q Consensus 161 ~~~--~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~ 238 (662)
... ......+.+..|+..+|..+.++|+++|+++|++|||+||++++- .|+.++.. ....+|+...
T Consensus 75 ~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r----------pg~~a~~~-~~~~~PL~~~- 142 (252)
T TIGR00268 75 KMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR----------PGYRAVKE-FNGVSPWAEF- 142 (252)
T ss_pred HHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc----------HHHHHHHH-cCCCCcchhc-
Confidence 421 111222456678899999999999999999999999999998741 22322221 1234676542
Q ss_pred ccccCHHHHHHHHHhCCCCeeeCCCCCCC
Q 006087 239 HDDLKNHSILLICQGGNRDWVEDPTNRSP 267 (662)
Q Consensus 239 r~~i~k~eI~~ya~~~gI~w~eDpSN~d~ 267 (662)
.++|.||+.|+++.|+||++||+|.+.
T Consensus 143 --~l~K~eIr~la~~~gl~~~~~ps~~Cl 169 (252)
T TIGR00268 143 --GITKKEIREIAKSLGISFPDKPSEACL 169 (252)
T ss_pred --CCCHHHHHHHHHHcCCCccCCCCCCce
Confidence 357999999999999999999998774
No 15
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.82 E-value=9.9e-20 Score=193.10 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=114.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHH-HHHcCCeEEEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR-VSDMGIRCEIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~-c~kLGIp~~i~~~~~ 161 (662)
++|+||+|||+||++|++++++.. | .+++|+|||||+++. .|.+.+.+. ++++||+++++++++
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~--G-----------~~v~av~vd~G~~~~--~E~e~~~~~~~~~lgi~~~vvd~~e 81 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI--G-----------DRLTCVFVDHGLLRK--GEAEQVVKTFGDRLGLNLVYVDAKE 81 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh--C-----------CCEEEEEEeCCCCCh--HHHHHHHHHHHHHcCCcEEEEeCcH
Confidence 789999999999999999987632 2 168999999999853 345555555 558999999998876
Q ss_pred ccCCC--CCCCHHH---HHHHHHHHHHHHHHHHcC-CcccccccccChhhHHHHHHhhccC-----CCcCccccccc--c
Q 006087 162 LDGRP--KQGHLQE---AARDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSRNS-----GVLGLAGMAFS--S 228 (662)
Q Consensus 162 ~~~~~--~~~niE~---~AR~~RY~~L~e~A~e~G-~d~LatGHhaDDqaET~LmrL~RGs-----Gi~GLaGM~~~--~ 228 (662)
.+... ...+.+. .+...+|..|.++|+++| +++|++|||+||++|++. |. ...++.||+.. .
T Consensus 82 ~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~-----G~~~~iks~~~~~gl~~~~~~ 156 (311)
T TIGR00884 82 RFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAA-----GTAHVIKSHHNVGGLPEDMKL 156 (311)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhcc-----ChhHhhhccCccccCChhhcC
Confidence 33211 1223333 355668899999999999 999999999999999974 21 11245566543 2
Q ss_pred ccccccccccccccCHHHHHHHHHhCCCCe---eeCC
Q 006087 229 QIFSSYAYSCHDDLKNHSILLICQGGNRDW---VEDP 262 (662)
Q Consensus 229 ~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w---~eDp 262 (662)
++++|+.. +.|+||+.+++++|+|+ +.-|
T Consensus 157 ~ii~PL~~-----l~K~EVr~la~~lgLp~~~~~~~P 188 (311)
T TIGR00884 157 KLVEPLRE-----LFKDEVRKLGKELGLPEEIVWRHP 188 (311)
T ss_pred ceEEEccc-----CcHHHHHHHHHHcCCCHHHhhCCC
Confidence 36777765 56899999999999994 4455
No 16
>PRK00919 GMP synthase subunit B; Validated
Probab=99.80 E-value=1e-18 Score=184.91 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
+..|.++-.+.+... +. +++++||+|||+||++|++++++.. | .+++|+|||||+++ ..|.+.
T Consensus 4 ~~~~~~~~~~~l~~~-~~-~~kVlVa~SGGVDSsvla~la~~~l--G-----------~~v~aV~vD~G~~~--~~E~e~ 66 (307)
T PRK00919 4 PEKFIEEAIEEIREE-IG-DGKAIIALSGGVDSSVAAVLAHRAI--G-----------DRLTPVFVDTGLMR--KGETER 66 (307)
T ss_pred HHHHHHHHHHHHHHH-hC-CCCEEEEecCCHHHHHHHHHHHHHh--C-----------CeEEEEEEECCCCC--HHHHHH
Confidence 344444433333332 33 3899999999999999999987632 2 16899999999974 578889
Q ss_pred HHHHHHHcCCeEEEEEcccccCC--CCCCCHH---HHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCC
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQ---EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG 217 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~~--~~~~niE---~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsG 217 (662)
++++|+++ +++++++++..+.. +...+.+ ..|...+|..|.++|++.|+++|++|||+||++|+ +| |
T Consensus 67 a~~~~~~~-i~~~vvd~~e~fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~------r~-~ 138 (307)
T PRK00919 67 IKETFSDM-LNLRIVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES------EG-G 138 (307)
T ss_pred HHHHHhcc-CCcEEEECCHHHHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhc------cC-c
Confidence 99999988 99999887642211 1112333 34566789999999999999999999999999998 33 2
Q ss_pred Cc---Ccccccccc--ccccccccccccccCHHHHHHHHHhCCCCee
Q 006087 218 VL---GLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 218 i~---GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
+. ++.|++... .+++|+.. +.|+||+.+++++|+|+.
T Consensus 139 iks~~nv~gl~~~~~~~Ii~PL~~-----l~K~EVr~la~~lGLp~~ 180 (307)
T PRK00919 139 IKSHHNVGGLPEGMVLKIVEPLRD-----LYKDEVREVARALGLPEE 180 (307)
T ss_pred ccccccccccChhhcCCcccCchh-----CcHHHHHHHHHHcCCChh
Confidence 32 455555432 36777765 468999999999999986
No 17
>PRK08349 hypothetical protein; Validated
Probab=99.78 E-value=2.3e-18 Score=170.92 Aligned_cols=149 Identities=12% Similarity=0.053 Sum_probs=107.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeE---EEEEcc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC---EIVRCD 160 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~---~i~~~~ 160 (662)
+++|++|||.||+++++++++ .|+ ++.++|+|++. .+.....+.++.+++.+|+++ +++++.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~---~g~-----------~v~av~~d~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR---RGV-----------EVYPVHFRQDE-KKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH---cCC-----------eEEEEEEeCCH-HHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 689999999999999998863 232 78999999952 122222333444555557886 333221
Q ss_pred ccc--------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccc
Q 006087 161 WLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 161 ~~~--------~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~r 232 (662)
... ......+.+..||..+|.++.++|.++|+++|+||||.||.+++.++|+.++.... ++ .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~~~---~i----~i~r 139 (198)
T PRK08349 67 EEQGPVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVISTAT---DL----PVLR 139 (198)
T ss_pred HHhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccccc---CC----eEEc
Confidence 010 00112357888999999999999999999999999999999999999998875321 12 2678
Q ss_pred ccccccccccCHHHHHHHHHhCCCCee
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
|++. ++|.||+.|+++.|++..
T Consensus 140 PL~~-----~~K~eI~~~a~~~g~~~~ 161 (198)
T PRK08349 140 PLIG-----LDKEEIVKIAKEIGTFEI 161 (198)
T ss_pred CCCC-----CCHHHHHHHHHHcCChhh
Confidence 8875 468999999999996543
No 18
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.78 E-value=1.4e-18 Score=187.16 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=127.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC--------CcHHHHHHHHHHHHHcCCeE
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRC 154 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~--------eS~~Ea~~V~~~c~kLGIp~ 154 (662)
++|+||+|||+||+++++++++ .|+ +++++|+++..++ .+.++.+.++++|+.+|||+
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~---~G~-----------~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~ 66 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ---QGY-----------EVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPL 66 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---cCC-----------eEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCE
Confidence 3799999999999999999864 232 6899999764331 24567889999999999999
Q ss_pred EEEEccccc-----------C-CCCCCCHHHHH-HHHHHHHHHHHHHHc-CCcccccccccChhhHHHHHHhhccCC---
Q 006087 155 EIVRCDWLD-----------G-RPKQGHLQEAA-RDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSG--- 217 (662)
Q Consensus 155 ~i~~~~~~~-----------~-~~~~~niE~~A-R~~RY~~L~e~A~e~-G~d~LatGHhaDDqaET~LmrL~RGsG--- 217 (662)
++++++..+ + .....|.+..| |.+||+.|.++|++. |+++||||||++|+-++...++.+|.+
T Consensus 67 ~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~k 146 (352)
T TIGR00420 67 EKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNK 146 (352)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCc
Confidence 999875322 0 11234677777 556799999999996 999999999996654444445666654
Q ss_pred --CcCccccccc--cccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 218 --VLGLAGMAFS--SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 218 --i~GLaGM~~~--~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
...|++++.. ..+++|+.. ++|.||+.||+++|++|.+.|..++.+|.
T Consensus 147 Dqsy~L~~l~~~~l~~~i~PL~~-----~~K~EVr~~A~~~gl~~~~k~~Sq~iCFi 198 (352)
T TIGR00420 147 DQSYFLYHLSHEQLAKLLFPLGE-----LLKPEVRQIAKNAGLPTAEKKDSQGICFI 198 (352)
T ss_pred CcceecccCCHHHhhhhcccCCC-----CCHHHHHHHHHHcCCCCCCCCCCCCeEEe
Confidence 2346666532 234566654 57899999999999999999999998864
No 19
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.77 E-value=5.2e-18 Score=164.88 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=115.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCc--HHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS--~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+|+||+|||+||+++++++++. |. ++.++|+|+|++... .+++..+.+.+.++++++.+..++.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~---g~-----------~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 66 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR---GI-----------EVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIF 66 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc---CC-----------eEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 5899999999999999998752 32 689999999997543 2345556666677887775443332
Q ss_pred cc------C-CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccc
Q 006087 162 LD------G-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (662)
Q Consensus 162 ~~------~-~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPl 234 (662)
.. . .....+.+..||..+|..+.++|+++|+++|++|||+||.+++.++++..... .....+++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~~-------~~~~~i~rPl 139 (177)
T cd01712 67 TFFVQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVISS-------GTDLPILRPL 139 (177)
T ss_pred cHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhccc-------CCCCeEECCC
Confidence 11 1 12234788999999999999999999999999999999999999999876431 1112367888
Q ss_pred ccccccccCHHHHHHHHHhCCCCeeeC
Q 006087 235 AYSCHDDLKNHSILLICQGGNRDWVED 261 (662)
Q Consensus 235 L~~~r~~i~k~eI~~ya~~~gI~w~eD 261 (662)
+. ++|.||+.+++++|++-+.-
T Consensus 140 ~~-----~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 140 IG-----FDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred CC-----CCHHHHHHHHHHcCCcceec
Confidence 75 46899999999999886543
No 20
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.76 E-value=5.4e-18 Score=159.50 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=118.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
+|+||+|||+||+||++++.++.... .++.++|+|+|.. .++..++++++|+++|++++++..+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-----------~~~~~v~~dtg~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-----------KPVPVIFLDTGYE--FPETYEFVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-----------cCceEEEeCCCCC--CHHHHHHHHHHHHHhCCCeEEECCCccH
Confidence 58999999999999999998653211 1578999999984 5678889999999999999988765432
Q ss_pred C---------C-CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccc
Q 006087 164 G---------R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (662)
Q Consensus 164 ~---------~-~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rP 233 (662)
. . ....+.+..|+..|+..+.+++++.|.+.+++||++||..|+.+++...+ .....++ ..++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~--~~~~~~~----~~~~P 141 (173)
T cd01713 68 AEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWT--DDGKGGI----LKVNP 141 (173)
T ss_pred HHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCccccc--cCCCCCc----EEEcc
Confidence 1 0 11235677889999999999999999999999999999999999887621 1111111 24677
Q ss_pred cccccccccCHHHHHHHHHhCCCCee
Q 006087 234 YAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 234 lL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
++. +++++|..|++++|++|.
T Consensus 142 l~~-----w~~~di~~~~~~~~l~~~ 162 (173)
T cd01713 142 LLD-----WTYEDVWAYLARHGLPYN 162 (173)
T ss_pred hhc-----CCHHHHHHHHHHcCCCCC
Confidence 775 468899999999999884
No 21
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.75 E-value=4.4e-18 Score=183.73 Aligned_cols=171 Identities=12% Similarity=0.118 Sum_probs=129.6
Q ss_pred CCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEE
Q 006087 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (662)
Q Consensus 78 ~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~ 157 (662)
|+.++++|+||+|||+||+++++++++ .|+ +++++|+++. . +|.+.++++|+++|||++++
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~---~G~-----------eV~av~~~~~-~----~e~~~a~~va~~LGI~~~vv 61 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQE---QGY-----------EIVGVTMRVW-G----DEPQDARELAARMGIEHYVA 61 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHH---cCC-----------cEEEEEecCc-c----hhHHHHHHHHHHhCCCEEEE
Confidence 356778999999999999999998763 332 6899999863 2 23456899999999999999
Q ss_pred EcccccC------------CCCCCCHHHHHH-HHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcC----
Q 006087 158 RCDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG---- 220 (662)
Q Consensus 158 ~~~~~~~------------~~~~~niE~~AR-~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~G---- 220 (662)
+++..+. .....|.+..|+ .+||++|.++|++.|+++||||||+++......++|.||.+...
T Consensus 62 d~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsy 141 (362)
T PRK14664 62 DERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSY 141 (362)
T ss_pred eChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHH
Confidence 8763211 112347888886 57999999999999999999999997754445678889986553
Q ss_pred -ccccccccccccccccccccccCHHHHHHHHHhCCCCe-eeCCCCCCCchh
Q 006087 221 -LAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW-VEDPTNRSPLFV 270 (662)
Q Consensus 221 -LaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w-~eDpSN~d~~y~ 270 (662)
|+.+++. .+.+.+ +|..+++|.||+.||+++|++- .+.+..++.+|.
T Consensus 142 fl~~l~~~--~l~~~i-fPLg~~~K~evr~~A~~~gl~~~a~k~dSq~iCFi 190 (362)
T PRK14664 142 FLWRLGQD--ILRRCI-FPLGNYTKQTVREYLREKGYEAKSKEGESMEVCFI 190 (362)
T ss_pred HHHhcCHH--HHhHHh-ccCccCCHHHHHHHHHHcCCCCCCCCCCCCcceee
Confidence 4455432 222222 3345678999999999999997 788899998986
No 22
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.74 E-value=2e-17 Score=180.13 Aligned_cols=150 Identities=18% Similarity=0.143 Sum_probs=112.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
.++|+||+|||+||++|++++++. .+ + .+++++|+|+|+++ +|.+.++++|+++||++++++++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~--~g---------~-~~Viav~vd~g~~~---~e~~~a~~~a~~lGi~~~vvd~~e 66 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK--YG---------Y-DEVITVTVDVGQPE---EEIKEAEEKAKKLGDKHYTIDAKE 66 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh--cC---------C-CEEEEEEEECCCCh---HHHHHHHHHHHHcCCCEEEEeCHH
Confidence 378999999999999999998641 11 1 16899999999863 466779999999999999988763
Q ss_pred ccCC--------C---CC--CCHHHHHHHHHHHHHHHHHHHcCCccccccc--ccChhh--HHHHHHhhccCCCcCcccc
Q 006087 162 LDGR--------P---KQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAH--HADDQA--ELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 162 ~~~~--------~---~~--~niE~~AR~~RY~~L~e~A~e~G~d~LatGH--haDDqa--ET~LmrL~RGsGi~GLaGM 224 (662)
.+.. . .. ......||..||.+|.++|+++|+++|++|| +.|||+ |+.+ ++. +|.++
T Consensus 67 ef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~----~a~---~l~vi 139 (394)
T PRK13820 67 EFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVF----RAS---DLEVI 139 (394)
T ss_pred HHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhh----Hhh---cCeee
Confidence 2210 0 01 1334689999999999999999999999999 555999 7763 332 24444
Q ss_pred ccccccccccccccccccCHHHHHHHHHhCCCCeeeCCC
Q 006087 225 AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPT 263 (662)
Q Consensus 225 ~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpS 263 (662)
.|.+ . ..++|+||++||+++||++..++.
T Consensus 140 aP~r-------e---~~ltK~ei~~ya~~~gip~~~~~~ 168 (394)
T PRK13820 140 APIR-------E---LNLTREWEIEYAKEKGIPVPVGKE 168 (394)
T ss_pred Cchh-------c---cCCCHHHHHHHHHHcCCCCCcCCC
Confidence 4322 2 134789999999999999976543
No 23
>PRK14561 hypothetical protein; Provisional
Probab=99.72 E-value=2.2e-17 Score=164.12 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=114.9
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+||+|||+||+++++++.++ . ++.++|+|+|++ .|.++++++|+.+|+++++++++...
T Consensus 2 kV~ValSGG~DSslll~~l~~~----~-----------~v~a~t~~~g~~----~e~~~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF----Y-----------DVELVTVNFGVL----DSWKHAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc----C-----------CeEEEEEecCch----hHHHHHHHHHHHhCCCEEEEECCHHH
Confidence 7999999999999999987542 1 467899999985 35778999999999999999877532
Q ss_pred CCC------CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccc
Q 006087 164 GRP------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (662)
Q Consensus 164 ~~~------~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~ 237 (662)
... ..+.+...+..+|+.++...+ +|+++|++|||+||.+||++++..++ +.+..||. +++|++.
T Consensus 63 ~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a--~~~~~gi~----iirPL~~- 133 (194)
T PRK14561 63 LEKAVDMIIEDGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQS--LEDRKGVQ----YIRPLLG- 133 (194)
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhh--hhcCCCcE----EEeeCCC-
Confidence 100 001122234578888888877 99999999999999999999998884 33444542 5788884
Q ss_pred cccccCHHHHHHHHHhCCCCeeeCCCCCCC--chhHHHHHHhh
Q 006087 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSP--LFVRNRIRMSL 278 (662)
Q Consensus 238 ~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~--~y~RNrIR~~L 278 (662)
++|.+|+.++++. +...+-+|+.-+ .|. +-||..+
T Consensus 134 ----~~K~eI~~la~~l-~~~~~~~~~~~~~~~~~-~~~~~~~ 170 (194)
T PRK14561 134 ----FGRKTIDRLVERL-FEIEEGESEEIPKSDYE-TELRELL 170 (194)
T ss_pred ----CCHHHHHHHHHhh-EEEEeccCCCcCccchH-HHHHHHH
Confidence 4688999998864 233344554432 343 4444444
No 24
>PLN02347 GMP synthetase
Probab=99.69 E-value=2.6e-16 Score=177.70 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=128.9
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|...+|+|+.+|+ +..-+.+..+.+.+.+ .+.++|+||+|||+||+++++++++... .
T Consensus 196 ~NFl~~ic~~~~~~~--~~~~~~~~i~~i~~~~-----~~~~~vvvalSGGVDSsvla~l~~~alG-------------~ 255 (536)
T PLN02347 196 RHFLFDVCGVTADWK--MQDVLEEQIELIKATV-----GPDEHVICALSGGVDSTVAATLVHKAIG-------------D 255 (536)
T ss_pred HHHHHHHhCcCCCcC--cchHHHHHHHHHHHHh-----ccCCeEEEEecCChhHHHHHHHHHHHhC-------------C
Confidence 457788899999999 4433444455555444 3357899999999999999999986432 1
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCC--CCCCHHHHHHHHHH---HHHHHHHH----HcCC
Q 006087 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRY---RLFQKVCI----QHQI 192 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~--~~~niE~~AR~~RY---~~L~e~A~----e~G~ 192 (662)
++.|++||+|+.+.+ +..+.++.+|+++||++++++++..+... ...|.|+.|...+. ..|.+.++ +.|.
T Consensus 256 ~v~av~id~g~~~~~-E~~~~~~~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~ 334 (536)
T PLN02347 256 RLHCVFVDNGLLRYK-EQERVMETFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQKLGK 334 (536)
T ss_pred cEEEEEEeCCCCChh-HHHHHHHHHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHHhhCC
Confidence 689999999987543 23344478999999999999987644322 22378887766655 66666653 3444
Q ss_pred --cccccccccChhhHHHHHHhhccC------CCc---Ccccccccc--ccccccccccccccCHHHHHHHHHhCCCC
Q 006087 193 --GVLLIAHHADDQAELFILRLSRNS------GVL---GLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRD 257 (662)
Q Consensus 193 --d~LatGHhaDDqaET~LmrL~RGs------Gi~---GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~ 257 (662)
++|+.|++++|..|+. .| .|. .++ ...|++... +++.|+ .++.|.||++++++.|++
T Consensus 335 ~~~~l~qGt~~~D~~es~-~r--~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL-----~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 335 KPAFLVQGTLYPDVIESC-PP--PGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPL-----KLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred CCcEEccCCccccccccc-CC--CCCccccccceeeecccccChHHHHCccccch-----hhCcHHHHHHHHHHcCCC
Confidence 8999999999999961 11 111 111 234444322 234444 347799999999999998
No 25
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.67 E-value=2.2e-16 Score=140.94 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=71.0
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccC
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~ 164 (662)
|+||+|||+||+++++++.++. . ++.++|+|||++++++ ..+++|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~---~-----------~~~~~~~~~~~~~~~~----~~~~~~~~--------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG---Y-----------QVIAVTVDHGISPRLE----DAKEIAKE--------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC---C-----------CEEEEEEcCCCcccHH----HHHHHHHH---------------
Confidence 6899999999999999987641 1 5789999999987443 34455544
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh
Q 006087 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (662)
Q Consensus 165 ~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~ 213 (662)
.||+.+.++|++.|+++|++|||+||++||++|+.+
T Consensus 48 -------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~ 83 (103)
T cd01986 48 -------------AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA 83 (103)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 899999999999999999999999999999999987
No 26
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.66 E-value=9.1e-16 Score=166.51 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=117.4
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHc---C--CeEE
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM---G--IRCE 155 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kL---G--Ip~~ 155 (662)
.+++++|++|||.||+++++++.+ .|. ++.++|+|++.. .+.++.+.++++|+++ + ++++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k---rG~-----------~V~av~~~~~~~-~~~~~~~~v~~l~~~l~~~~~~~~l~ 235 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK---RGC-----------RVVAVHFFNEPA-ASEKAREKVERLANSLNETGGSVKLY 235 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH---cCC-----------eEEEEEEeCCCC-ccHHHHHHHHHHHHHHhhcCCCceEE
Confidence 357999999999999999999864 332 689999998764 3456778899999987 4 4666
Q ss_pred EEEcccccC----CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 156 IVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 156 i~~~~~~~~----~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
++++..... .......+..||..+|.++.++|++.|+++|+||||++|.+++.++++.--. . .....++
T Consensus 236 ~v~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~-----~--~~~~~I~ 308 (371)
T TIGR00342 236 VFDFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQ-----A--VSNTPIL 308 (371)
T ss_pred EEeCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHh-----c--cCCCCEE
Confidence 665432211 0112245678999999999999999999999999999999999988863110 0 0112367
Q ss_pred cccccccccccCHHHHHHHHHhCCC-CeeeCCCCCC
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNR-DWVEDPTNRS 266 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI-~w~eDpSN~d 266 (662)
+|++. ++|.||+.++++.|. ++...|.+.+
T Consensus 309 rPLi~-----~~K~EIi~~a~~iG~~~~s~~~~~~c 339 (371)
T TIGR00342 309 RPLIG-----MDKEEIIELAKEIGTYEISIEPHEDC 339 (371)
T ss_pred eCCCC-----CCHHHHHHHHHHhCCcceeecCCCce
Confidence 88874 468999999999996 4445566655
No 27
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.65 E-value=2e-15 Score=154.13 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=127.6
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
..+++||+|||+||++|+.++.+...+ ++.|+|||...-+ ..+.+.++.+|+++||.|.++..+.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~-------------~v~AvTv~sP~~p--~~e~e~A~~~A~~iGi~H~~i~~~~ 81 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGD-------------NVVAVTVDSPYIP--RREIEEAKNIAKEIGIRHEFIKMNR 81 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhcc-------------ceEEEEEecCCCC--hhhhhHHHHHHHHhCCcceeeehhh
Confidence 469999999999999999998764322 6899999987533 3466778899999999999998875
Q ss_pred cc--CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccc
Q 006087 162 LD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (662)
Q Consensus 162 ~~--~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r 239 (662)
.. ...+..+-|..|+...|..+.+.|.+.|+++|+-|.|+||.-+ +-.|+...... ++..|++.+
T Consensus 82 ~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~----------~RPG~rA~kE~-gi~sPl~e~-- 148 (269)
T COG1606 82 MDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD----------YRPGLRALKEL-GIRSPLAEF-- 148 (269)
T ss_pred cchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC----------CCcchhhHHhc-CCCChHHHh--
Confidence 54 1223457788999999999999999999999999999999655 34566555543 466788765
Q ss_pred cccCHHHHHHHHHhCCCCeeeCCCCCCCc
Q 006087 240 DDLKNHSILLICQGGNRDWVEDPTNRSPL 268 (662)
Q Consensus 240 ~~i~k~eI~~ya~~~gI~w~eDpSN~d~~ 268 (662)
.+++++|+.+++..|++|++.|+-.+..
T Consensus 149 -gitk~eIre~a~~lgl~~~~kp~~aCl~ 176 (269)
T COG1606 149 -GITKKEIREIAKSLGLPTWDKPSMACLA 176 (269)
T ss_pred -CCcHHHHHHHHHHcCCCcccCccccccc
Confidence 6789999999999999999999887743
No 28
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.65 E-value=1.6e-16 Score=171.17 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=110.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC-------cHHHHHHHHHHHHHcCCeEE
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRCE 155 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e-------S~~Ea~~V~~~c~kLGIp~~ 155 (662)
.||+||+|||+||++.++||+ ++|+ +++++|+...--.+ +.++.+.+++.|++|||||+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk---~~G~-----------~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~ 66 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK---EQGY-----------DVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHY 66 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH---HCT------------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EE
T ss_pred CeEEEEccCCHHHHHHHHHHH---hhcc-----------cceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEE
Confidence 489999999999999999986 3553 79999987654322 34678899999999999999
Q ss_pred EEEcccccC------------CCCCCCHHHHH-HHHHHHHHHHHHHH-cCCcccccccccChhhH--HHHHHhhccCCCc
Q 006087 156 IVRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAE--LFILRLSRNSGVL 219 (662)
Q Consensus 156 i~~~~~~~~------------~~~~~niE~~A-R~~RY~~L~e~A~e-~G~d~LatGHhaDDqaE--T~LmrL~RGsGi~ 219 (662)
++++...+. .....|++..| |.+++++|.++|.+ .|+++|||||++.-.-. +--.+|.||....
T Consensus 67 v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~ 146 (356)
T PF03054_consen 67 VVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPK 146 (356)
T ss_dssp EEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTT
T ss_pred EEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCC
Confidence 999875431 12345888888 78999999999999 99999999999852222 3334566665433
Q ss_pred -----CccccccccccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 220 -----GLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 220 -----GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
.|++++.. .++ .+.+|..+++|.||+++|++.|++-.+.+..++.+|.
T Consensus 147 KDQSYfL~~l~~~--~L~-~~~FPLG~~~K~eVR~iA~~~gl~~a~k~eSq~iCFi 199 (356)
T PF03054_consen 147 KDQSYFLSRLPQE--QLS-RLIFPLGELTKEEVREIAREAGLPVAEKKESQGICFI 199 (356)
T ss_dssp C--GGGGTT--HH--HHC-CEE-TCCCS-HHHHHHHHHHCT-TTTT-----SSTTT
T ss_pred CCceEEEEecCHH--HHH-hhcCCCCCCCHHHHHHHHHhcCCcccCccccceEEEe
Confidence 46666643 233 3445667889999999999999998888888888875
No 29
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.60 E-value=6e-15 Score=142.11 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=100.9
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+|++|||+||+++++++.+ .+. ++.++|+|+|.+. ..+.+.++++|+++| |+.....
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~---~~~-----------~v~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~~~~---- 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK---EGY-----------EVHALSFDYGQRH--AKEEEAAKLIAEKLG-PSTYVPA---- 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH---cCC-----------cEEEEEEECCCCC--hhHHHHHHHHHHHHC-CCEEEeC----
Confidence 589999999999999998864 221 5889999999763 345578999999999 4433221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh------HHHHHHhhccCCCcCccccccccccccccccc
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa------ET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~ 237 (662)
.+ ...+.++.++|.++|+++|++|||+||.. ++++..+.+..+...-.++ .+++|++.
T Consensus 60 -----~~------~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~PL~~- 123 (169)
T cd01995 60 -----RN------LIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGI----KIHAPLID- 123 (169)
T ss_pred -----cC------HHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHHHhhcCCCe----EEEeCccc-
Confidence 01 13457889999999999999999999964 4554333221111111122 25778875
Q ss_pred cccccCHHHHHHHHHhCCCCeeeCCCCCCC
Q 006087 238 CHDDLKNHSILLICQGGNRDWVEDPTNRSP 267 (662)
Q Consensus 238 ~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~ 267 (662)
++|.+|+.+++++|++|..+-|=..+
T Consensus 124 ----~~K~ei~~~~~~~g~~~~~s~sC~~~ 149 (169)
T cd01995 124 ----LSKAEIVRLGGELGVPLELTWSCYNG 149 (169)
T ss_pred ----CCHHHHHHHHhHcCCChhheeeccCC
Confidence 46889999999999999876654443
No 30
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.59 E-value=1.6e-14 Score=148.61 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHH
Q 006087 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (662)
Q Consensus 64 ~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V 143 (662)
+++.+.+.+.+...+ .++|+||+|||+||+++++++.+.. + .++++++++++.. .+..|.+.+
T Consensus 7 ~~l~~~l~~~v~~~~---~~~V~vglSGGiDSsvla~l~~~~~--~-----------~~~~~~~~~~~~~-~~~~e~~~a 69 (250)
T TIGR00552 7 EEIEDFLRGYVQKSG---AKGVVLGLSGGIDSAVVAALCVEAL--G-----------EQNHALLLPHSVQ-TPEQDVQDA 69 (250)
T ss_pred HHHHHHHHHHHHHhC---CCCEEEECCCcHHHHHHHHHHHHhh--C-----------CceEEEEECCccC-CCHHHHHHH
Confidence 344555555555543 5789999999999999999886532 1 1567889999853 356788899
Q ss_pred HHHHHHcCCeEEEEEcccccC-------C--CCCC--CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHh
Q 006087 144 SHRVSDMGIRCEIVRCDWLDG-------R--PKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~-------~--~~~~--niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL 212 (662)
+++|+.+||++++++++.... . +... ..+..|..+|+.+|..+|+++|+.+|+||||.++..
T Consensus 70 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~------- 142 (250)
T TIGR00552 70 LALAEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML------- 142 (250)
T ss_pred HHHHHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh-------
Confidence 999999999999988764321 0 1110 124556669999999999999999999999976532
Q ss_pred hccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCCe--eeCCCCCC
Q 006087 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW--VEDPTNRS 266 (662)
Q Consensus 213 ~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w--~eDpSN~d 266 (662)
|-+.. .|- ....++|+.. +.|.+|+.+|+.+|+|. .+.|...+
T Consensus 143 --G~~t~--~gd--~~~~i~PL~~-----l~K~eV~~lA~~~g~p~~i~~k~psa~ 187 (250)
T TIGR00552 143 --GYFTK--YGD--GGCDIAPIGD-----LFKTQVYELAKRLNVPERIIEKPPTAD 187 (250)
T ss_pred --CCeec--ccC--CccCccccCC-----CcHHHHHHHHHHHCccHHHhCCCCCcC
Confidence 21111 110 0113577755 45789999999999985 45555554
No 31
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.59 E-value=5.5e-15 Score=146.78 Aligned_cols=149 Identities=16% Similarity=0.208 Sum_probs=107.0
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccC
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~ 164 (662)
++|++|||+||+++++++.+ .+. ++.++|+|+|.+ ...|.+.++++|+++|+++++++++....
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~---~g~-----------~v~~~~~~~~~~--~~~e~~~a~~~a~~lgi~~~~~~~~~~~~ 64 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD---EGY-----------EVHAITFDYGQR--HSRELESARKIAEALGIEHHVIDLSLLKQ 64 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH---cCC-----------cEEEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEEechhhcc
Confidence 48999999999999998864 221 688999999976 35688899999999999999988764211
Q ss_pred -C----------CC-CCCHH-------HHHHHHHH-HHHHHHHHHcCCcccccccccChhh------HHHHHHhhccCCC
Q 006087 165 -R----------PK-QGHLQ-------EAARDMRY-RLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGV 218 (662)
Q Consensus 165 -~----------~~-~~niE-------~~AR~~RY-~~L~e~A~e~G~d~LatGHhaDDqa------ET~LmrL~RGsGi 218 (662)
. +. ..+.+ -.+|...+ ..+..+|+++|++.|++|||+||.+ ++|++++......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~ 144 (201)
T TIGR00364 65 LGGSALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL 144 (201)
T ss_pred cccccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh
Confidence 0 00 00111 01344443 7778999999999999999999974 7888887654321
Q ss_pred cCccccccccccccccccccccccCHHHHHHHHHhCC---CCe
Q 006087 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN---RDW 258 (662)
Q Consensus 219 ~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~g---I~w 258 (662)
..-.+ -.+++|++. ++|.||+++++++| ++|
T Consensus 145 ~~~~~----~~i~~Pl~~-----~~K~eI~~la~~~g~~~~~~ 178 (201)
T TIGR00364 145 GMLTP----VKIRAPLMD-----LTKAEIVQLADELGVLDLVI 178 (201)
T ss_pred hcCCC----eEEEECCcC-----CCHHHHHHHHHHcCCccccH
Confidence 10111 126778775 46899999999999 775
No 32
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.58 E-value=2.1e-14 Score=156.34 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=113.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcC-------CeE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-------IRC 154 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLG-------Ip~ 154 (662)
+.++++++|||.||.++++++.+ .|. ++.++|+|+| ..+.+.|+++|+.++ +++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~k---rG~-----------~V~~v~f~~g-----~~~~e~v~~la~~L~~~~~~~~i~l 240 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMK---RGV-----------EVIPVHIYMG-----EKTLEKVRKIWNQLKKYHYGGKAEL 240 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHH---cCC-----------eEEEEEEEeC-----HHHHHHHHHHHHHhcccccCCcceE
Confidence 47999999999999999999864 342 7899999987 345677899999888 556
Q ss_pred EEEEccc----cc---CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccc
Q 006087 155 EIVRCDW----LD---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS 227 (662)
Q Consensus 155 ~i~~~~~----~~---~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~ 227 (662)
+++++.. .. .....+..+..||..+|..+.++|+++|+++|+|||+++|.+++.++|+..-.... .+
T Consensus 241 ~~v~~~~~~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~~---~l--- 314 (381)
T PRK08384 241 IVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQAS---DL--- 314 (381)
T ss_pred EEEChHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhccC---CC---
Confidence 6666431 10 01123457889999999999999999999999999999999999998874311000 11
Q ss_pred cccccccccccccccCHHHHHHHHHhCC-CCeeeCCC
Q 006087 228 SQIFSSYAYSCHDDLKNHSILLICQGGN-RDWVEDPT 263 (662)
Q Consensus 228 ~~i~rPlL~~~r~~i~k~eI~~ya~~~g-I~w~eDpS 263 (662)
.+++|++.. .|.||+++|++.| .+...-|.
T Consensus 315 -pilRPLi~~-----dK~EIi~~Ar~iGT~~~s~~~~ 345 (381)
T PRK08384 315 -PIYRPLIGM-----DKEEIVAIAKTIGTFELSTLPE 345 (381)
T ss_pred -cEEeeCCCC-----CHHHHHHHHHHcCCcccccCCC
Confidence 367888754 5899999999999 65444333
No 33
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.57 E-value=1.8e-14 Score=157.48 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=111.9
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~ 162 (662)
+|+||+|||+||+++++++++ .|. +++|+|+|+|.+ .+|.+.+++.|+++|+ ++++++++..
T Consensus 1 kVvla~SGGlDSsvll~~l~e---~g~-----------~V~av~id~Gq~---~~e~~~a~~~a~~lGi~~~~viD~~~e 63 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLRE---KGY-----------EVIAYTADVGQP---EEDIDAIPEKALEYGAENHYTIDAREE 63 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHH---cCC-----------EEEEEEEecCCC---hHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 589999999999999998864 232 799999999975 5678889999999998 7999988633
Q ss_pred cCC----C-CCCC---------HHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCcccccc
Q 006087 163 DGR----P-KQGH---------LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAF 226 (662)
Q Consensus 163 ~~~----~-~~~n---------iE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM~~ 226 (662)
+.. + ...+ ....||.++|..+.++|++.|+++|+.||+. |||+. +.|..+.... ++
T Consensus 64 f~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr--f~r~~~~~~~-~l----- 135 (394)
T TIGR00032 64 FVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER--FERSIRLLNP-DL----- 135 (394)
T ss_pred HHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH--HHHHHHHhCC-CC-----
Confidence 211 1 0111 1235899999999999999999999999977 59876 3444443222 22
Q ss_pred ccccccccccccccccCHHHHHHHHHhCCCCeeeCCCC
Q 006087 227 SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTN 264 (662)
Q Consensus 227 ~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN 264 (662)
+++.|+... .+.+++++.|++++||++..++.+
T Consensus 136 --~viaPLrew---~l~r~ei~~ya~~~Gip~~~~~~~ 168 (394)
T TIGR00032 136 --KVIAPWRDL---NFTREEEIEYAIQCGIPYPMSKEK 168 (394)
T ss_pred --eEECchhhc---CCCHHHHHHHHHHcCCCeeEecCC
Confidence 245666332 236889999999999999877543
No 34
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.9e-14 Score=154.14 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=126.9
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-C----CCcHHHHHHHHHHHHHcCCeEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-R----EESKEEANIVSHRVSDMGIRCEI 156 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-R----~eS~~Ea~~V~~~c~kLGIp~~i 156 (662)
..||+||+|||+||++.++||++ +|+ +++++|+.... . ..|.+|...+++.|+++|||+++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~---QGy-----------eViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~ 68 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKE---QGY-----------EVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYV 68 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHH---cCC-----------eEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEE
Confidence 47899999999999999999963 454 78999985433 1 35778889999999999999999
Q ss_pred EEcccccC------------CCCCCCHHHHH-HHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCc----
Q 006087 157 VRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL---- 219 (662)
Q Consensus 157 ~~~~~~~~------------~~~~~niE~~A-R~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~---- 219 (662)
+++...+. .....|++..| |.+.++.|.+.|.++|+++|||||++.=.-..--..|.||....
T Consensus 69 vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQs 148 (356)
T COG0482 69 VDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQS 148 (356)
T ss_pred EchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchh
Confidence 98864321 12345889999 99999999999999999999999998532211012244544322
Q ss_pred -CccccccccccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCch
Q 006087 220 -GLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLF 269 (662)
Q Consensus 220 -GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y 269 (662)
.|..+...+ +.+++ +|..+++|.+++.+|.+.|++..+.+-..+.+|
T Consensus 149 YfL~~~~~~q--l~~~l-FPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICF 196 (356)
T COG0482 149 YFLYALSQEQ--LERLL-FPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICF 196 (356)
T ss_pred heecccCHHH--Hhhcc-ccCCCCCHHHHHHHHHHcCCCccCcccCCccee
Confidence 244443321 33333 445678999999999999999998888888776
No 35
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.53 E-value=5.8e-14 Score=153.43 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=115.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~ 161 (662)
++|+||+|||+||+++++++++- .|. +++++|+|+|.+ +|.+.+++.|+++|+ +++++++..
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~--lG~-----------eViavt~d~Gq~----~dle~a~~~A~~lGi~~~~viD~~~ 65 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET--YGC-----------EVIAFTADVGQG----EELEPIREKALKSGASEIYVEDLRE 65 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh--hCC-----------eEEEEEEecCCH----HHHHHHHHHHHHcCCCeEEEEcCHH
Confidence 68999999999999999988641 132 689999999975 577889999999998 677776652
Q ss_pred cc--------C------CCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCccccc
Q 006087 162 LD--------G------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (662)
Q Consensus 162 ~~--------~------~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM~ 225 (662)
.+ . .....+.+..||..-++.|.++|+++|+++|++|||+ |||..- + .|+.++.
T Consensus 66 ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf---~-------~g~~al~ 135 (399)
T PRK00509 66 EFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRF---E-------LGIAALA 135 (399)
T ss_pred HHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHH---H-------HHHHHhC
Confidence 21 1 1123367888999999999999999999999999999 999862 1 1344444
Q ss_pred ccccccccccccccccc-CHHHHHHHHHhCCCCeeeCCC
Q 006087 226 FSSQIFSSYAYSCHDDL-KNHSILLICQGGNRDWVEDPT 263 (662)
Q Consensus 226 ~~~~i~rPlL~~~r~~i-~k~eI~~ya~~~gI~w~eDpS 263 (662)
|..+++.|+... .+ +|+++++||+++|||.-.++.
T Consensus 136 pel~VisPlre~---~~~tK~eir~~A~~~Gipv~~~~~ 171 (399)
T PRK00509 136 PDLKVIAPWREW---DLKSREELIAYAEEHGIPIPVTKK 171 (399)
T ss_pred CCCeeecchhhc---CCCCHHHHHHHHHHcCCCCCCCCC
Confidence 444566676553 34 799999999999999854443
No 36
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.52 E-value=4.2e-14 Score=145.77 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-CCCcHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEAN 141 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-R~eS~~Ea~ 141 (662)
.++..++++++++ ++++++|+|||+||++++.|+++.... ++++++||||| |. .|.+
T Consensus 8 ie~~i~~ir~~vg------~~kvi~alSGGVDSsv~a~L~~~AiGd-------------~l~cvfVD~GLlR~---~E~e 65 (315)
T COG0519 8 IEEAIEEIREQVG------DGKVILALSGGVDSSVAAVLAHRAIGD-------------QLTCVFVDHGLLRK---GEAE 65 (315)
T ss_pred HHHHHHHHHHHhC------CceEEEEecCCCcHHHHHHHHHHHhhc-------------ceEEEEecCCcccC---CcHH
Confidence 3444445555443 389999999999999999999876543 68999999995 53 3445
Q ss_pred HHHHHHH-HcCCeEEEEEcccccCCCCC--CCHHHHHHHHHH---HHHHHHHHHcCCcccccccccChhhHHHHHHhhcc
Q 006087 142 IVSHRVS-DMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRY---RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (662)
Q Consensus 142 ~V~~~c~-kLGIp~~i~~~~~~~~~~~~--~niE~~AR~~RY---~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RG 215 (662)
.|.+... .+|+++.+++....+..... ...|+..+.+.. +.|++.|++.++++|+.|.-+.|.+|+. .|
T Consensus 66 ~V~~~f~~~~~~nl~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~-----~g 140 (315)
T COG0519 66 QVVEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESG-----TG 140 (315)
T ss_pred HHHHHHHhhcCCceEEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeec-----CC
Confidence 5666554 59999999887665543322 356776655554 4588999999999999999999999986 33
Q ss_pred C--CCc---Cccccccccc--cccccccccccccCHHHHHHHHHhCCCCe
Q 006087 216 S--GVL---GLAGMAFSSQ--IFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 216 s--Gi~---GLaGM~~~~~--i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
. +++ ...|+|...+ ++.|+-.+ -|+|++..+++.|+|-
T Consensus 141 ~~~~IKSHHNVGGLP~~m~lkLvEPLr~L-----fKDEVR~lg~~LGlp~ 185 (315)
T COG0519 141 KAGTIKSHHNVGGLPEDMKLKLVEPLREL-----FKDEVRELGRELGLPE 185 (315)
T ss_pred CCCccccccccCCCccccceeeeHHHHHH-----hHHHHHHHHHHhCCCH
Confidence 2 222 3667776543 55665444 4789999999999973
No 37
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.52 E-value=3.5e-14 Score=148.91 Aligned_cols=199 Identities=20% Similarity=0.222 Sum_probs=151.6
Q ss_pred HcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEE
Q 006087 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155 (662)
Q Consensus 76 ~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~ 155 (662)
+..+..+++|.++.|||.||++|++.+..+... +++..++..+.+|||++..-+.-...|+....++|+|+.
T Consensus 45 n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r--------~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ 116 (347)
T KOG2840|consen 45 NKLFARGERVAIGASGGKDSTVLAYVLDALNER--------HDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLC 116 (347)
T ss_pred cCccCCCCccccccccchhHHHHHHHHHHhhhh--------cCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceE
Confidence 345888999999999999999999998876543 122347888899999987666666778888999999999
Q ss_pred EEEcccccC-CCC----------CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCC--CcCcc
Q 006087 156 IVRCDWLDG-RPK----------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG--VLGLA 222 (662)
Q Consensus 156 i~~~~~~~~-~~~----------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsG--i~GLa 222 (662)
++......+ +.. ..|-+..|-..|++++.+-+...|+..++|||++||.+||++||++||-. ...+.
T Consensus 117 ivs~~dl~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~ 196 (347)
T KOG2840|consen 117 IVSYKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERLT 196 (347)
T ss_pred EecHHHHhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhcc
Confidence 998764332 110 22445567899999999999999999999999999999999999999852 11222
Q ss_pred cccccc-cc-ccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhccC
Q 006087 223 GMAFSS-QI-FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 283 (662)
Q Consensus 223 GM~~~~-~i-~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~~ 283 (662)
.+..-. .. ..|-+.+.+ ...+.||..|+....+.|+.-.+++.+.-.|..-|..|.+++.
T Consensus 197 ~~~t~~~e~~~~~r~kplk-~~~~keivLya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~ 258 (347)
T KOG2840|consen 197 EITTPSLEMGIIPRLKPLK-YASEKEIVLYASLSKLRYFSTECVKAPGASRGDARILLKDLER 258 (347)
T ss_pred ccccCccccCccccccccc-cchhhehhhHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhh
Confidence 221110 01 133444443 2356788889999999999999999999889999999998873
No 38
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.52 E-value=5.6e-14 Score=153.72 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=113.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcC-----CeEE
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-----IRCE 155 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLG-----Ip~~ 155 (662)
.+++++|++|||.||+++++++.+ .|. ++.++|++..- -.+..+.+.++++|++++ ++++
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k---~G~-----------~v~av~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~i~~~ 239 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMK---RGV-----------EIEAVHFHSPP-YTSERAKEKVIDLARILAKYGGRIKLH 239 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHH---CCC-----------EEEEEEEeCCC-CCcHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 357999999999999999999854 332 68899995411 123456677888888774 9999
Q ss_pred EEEccccc--CCCCCC--CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 156 IVRCDWLD--GRPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 156 i~~~~~~~--~~~~~~--niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
++++++.. ...... ..+-.||..+|.++..+|+++|+++|+||||++|.+++.+.++. + +..... ..++
T Consensus 240 vv~~~~~~~~i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~-~--i~~~~~----~~V~ 312 (394)
T PRK01565 240 VVPFTEIQEEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMY-A--INAVTN----LPVL 312 (394)
T ss_pred EEECHHHHHHHhhcCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHH-H--HhhccC----cEEE
Confidence 99987642 111111 12336899999999999999999999999999999976665553 1 111111 2367
Q ss_pred cccccccccccCHHHHHHHHHhCCC-CeeeCCCCCC
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNR-DWVEDPTNRS 266 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI-~w~eDpSN~d 266 (662)
+|++. +.|.||+.++++.|. +|...|+..+
T Consensus 313 rPLig-----~~K~EI~~lAr~iG~~~~s~~p~~~c 343 (394)
T PRK01565 313 RPLIG-----MDKEEIIEIAKEIGTYDISILPYEDC 343 (394)
T ss_pred ECCCC-----CCHHHHHHHHHHhCCHHHhcCCCcCe
Confidence 88864 568999999999997 5545566544
No 39
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.45 E-value=1.5e-12 Score=137.91 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=111.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
++++|++|||+||++||+|+.+....+ ...+.++|||.|. +.++..+++.++|+++|+++++......
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~----------~~~~~vl~iDTG~--~FpEt~ef~d~~a~~~gl~l~v~~~~~~ 95 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG----------KLPFPLLHVDTGW--KFPEMIEFRDRRAKELGLELIVHSNPEG 95 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc----------CCCeeEEEEeCCC--CCHHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 689999999999999999997643211 1246789999997 3467778999999999999998765421
Q ss_pred cC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh----hHHHHHH---hhccCCCcCccccccc-----
Q 006087 163 DG---RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ----AELFILR---LSRNSGVLGLAGMAFS----- 227 (662)
Q Consensus 163 ~~---~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq----aET~Lmr---L~RGsGi~GLaGM~~~----- 227 (662)
.. .+...+.+..|...+...|.++++++|++++++||+.||- .|+++.- ..++. . ..++|.
T Consensus 96 i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~~~~~wd-~---~~q~Pelw~~~ 171 (301)
T PRK05253 96 IARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQWD-P---KNQRPELWNLY 171 (301)
T ss_pred HhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccccccccccC-c---cccChhhhhhc
Confidence 11 1122346788999999999999999999999999999994 3454421 11111 0 011110
Q ss_pred --------cccccccccccccccCHHHHHHHHHhCCCCeeeC
Q 006087 228 --------SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261 (662)
Q Consensus 228 --------~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eD 261 (662)
.-.+.|++ .++..+|..|+..+|||+..-
T Consensus 172 ~~~~~~g~~~rV~PL~-----~Wte~DIw~Yi~~~~IP~~pL 208 (301)
T PRK05253 172 NGRINKGEHIRVFPLS-----NWTELDIWQYIERENIPIVPL 208 (301)
T ss_pred cccccCCCeEEEeehh-----hCCHHHHHHHHHHcCCCCCcc
Confidence 00134554 456899999999999998543
No 40
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.45 E-value=1.8e-13 Score=129.71 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=82.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
.++|++|||+||+++++++.+.. + .++.++|+|||++ ++++.++++++|++ |+++....+++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~--~-----------~~v~~v~~~~g~~--~~~~~~~~~~~a~~-g~~~~~~~~~~~~ 66 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY--G-----------LNPLAVTVDNGFN--SEEAVKNIKNLIKK-GLDLDHLVINPEE 66 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh--C-----------CceEEEEeCCCCC--CHHHHHHHHHHHHh-CCCeEEEecCHHH
Confidence 58999999999999999986421 1 1478899999997 35567889999999 8887766665432
Q ss_pred CC--------CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 164 GR--------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 164 ~~--------~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
.. ....+++..|+..||.++.++|++.|+++|++|||+|+.
T Consensus 67 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~ 115 (154)
T cd01996 67 MKDLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQE 115 (154)
T ss_pred HHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHh
Confidence 10 012345667899999999999999999999999999985
No 41
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.43 E-value=7.8e-13 Score=144.83 Aligned_cols=153 Identities=13% Similarity=0.111 Sum_probs=111.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeE-EEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC-EIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~-~i~~~~~ 161 (662)
++|+||+|||+||+++++++++- .| .+++++|+|.|.+ .+|.+.+++.|+++||++ +++++..
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~--~G-----------~eViav~id~Gq~---~~el~~a~~~A~~lGi~~~~v~dl~~ 69 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLREN--YG-----------CEVVCFTADVGQG---IEELEGLEAKAKASGAKQLVVKDLRE 69 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHh--hC-----------CeEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 68999999999999999988641 12 2689999999964 357788999999999974 6666543
Q ss_pred ccC----CCC-CCC---------HHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCccccc
Q 006087 162 LDG----RPK-QGH---------LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (662)
Q Consensus 162 ~~~----~~~-~~n---------iE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM~ 225 (662)
.+. .+. ..| .-..+|..-+..+.++|++.|+++|+.||+. |||..- + .|+..+.
T Consensus 70 ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf---~-------~~~~al~ 139 (404)
T PLN00200 70 EFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRF---E-------LTFFALN 139 (404)
T ss_pred HHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHH---H-------HHHHHhC
Confidence 221 110 001 1135688999999999999999999999999 999862 1 1233444
Q ss_pred ccccccccccccccccc-CHHHHHHHHHhCCCCeeeCCCC
Q 006087 226 FSSQIFSSYAYSCHDDL-KNHSILLICQGGNRDWVEDPTN 264 (662)
Q Consensus 226 ~~~~i~rPlL~~~r~~i-~k~eI~~ya~~~gI~w~eDpSN 264 (662)
|..+++.|+... .+ +|+++++||+++|||....|.+
T Consensus 140 pel~ViaPlre~---~~~~r~e~~~~A~~~Gipv~~~~~~ 176 (404)
T PLN00200 140 PELKVVAPWREW---DIKGREDLIEYAKKHNIPVPVTKKS 176 (404)
T ss_pred CCCeeeCchhhc---CCCCHHHHHHHHHHcCCCCCCCCCC
Confidence 433456676553 34 4899999999999997766653
No 42
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.43 E-value=4.1e-13 Score=146.55 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~ 160 (662)
.++|+||+|||+||+++++++++ .|. +++|+|+|.|.++ .+|.+.+++.|+++|+ +|++++++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e---~G~-----------~Viavt~d~gq~~--~~El~~a~~~A~~lG~~~~~viD~~ 65 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE---RGY-----------AVHTVFADTGGVD--AEERDFIEKRAAELGAASHVTVDGG 65 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH---cCC-----------cEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEecCH
Confidence 36899999999999999998864 332 6899999999864 4678889999999998 69999876
Q ss_pred cccCCC--------------CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccc--cChhhHHHHHHhhccCCCcCcccc
Q 006087 161 WLDGRP--------------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 161 ~~~~~~--------------~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHh--aDDqaET~LmrL~RGsGi~GLaGM 224 (662)
..+... ...+.+ ..|-..+..|.++|+++|+++|++|+| .|||..- + .|+..+
T Consensus 66 eef~e~vi~p~i~aNa~y~G~yPl~~-~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rf---r-------pg~~Al 134 (400)
T PRK04527 66 PAIWEGFVKPLVWAGEGYQGQYPLLV-SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRF---D-------LAVKAL 134 (400)
T ss_pred HHHHHHHHHHHHhcchhhcCCCCCcc-ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhc---c-------HHHHHh
Confidence 533110 011222 368889999999999999999999999 8999862 1 123333
Q ss_pred cccccccccccccc--ccccCHHHHHHHHHhCCCCeeeCCCCCC
Q 006087 225 AFSSQIFSSYAYSC--HDDLKNHSILLICQGGNRDWVEDPTNRS 266 (662)
Q Consensus 225 ~~~~~i~rPlL~~~--r~~i~k~eI~~ya~~~gI~w~eDpSN~d 266 (662)
. ..+++.|+.... +.+ .+++.++||+++|||.-.++.+++
T Consensus 135 ~-el~ViaPlre~~~~k~~-~R~~~i~ya~~~gipv~~~~~~yS 176 (400)
T PRK04527 135 G-DYQIVAPIREIQKEHTQ-TRAYEQKYLEERGFGVRAKQKAYT 176 (400)
T ss_pred h-cCCccchHHHhcCcccc-cHHHHHHHHHHcCCCCCCCCCCcc
Confidence 3 223566765432 112 355667899999999855544443
No 43
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.39 E-value=2.1e-12 Score=140.95 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=107.3
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEccccc
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDWLD 163 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~~~~ 163 (662)
|+||+|||.||+++++++++. + + .+++++|+|+|.+. ++.+.+++.|+++|++ +++++++..+
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~--------~--~eV~av~~d~Gq~~---~~~e~a~~~a~~lG~~~~~viD~~~ef 64 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---G--------G--YEVIAVTADVGQPE---EEIEAIEEKALKLGAKKHVVVDLREEF 64 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---C--------C--CeEEEEEEECCCcc---hhHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 689999999999999988642 1 1 26899999999753 2337799999999996 8888765422
Q ss_pred C----CC----C---CC---CHHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCccccccc
Q 006087 164 G----RP----K---QG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAFS 227 (662)
Q Consensus 164 ~----~~----~---~~---niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM~~~ 227 (662)
. .+ . .+ .....||..-+..+.++|++.|+++|++|||. +||.. +-. ++..+.+.
T Consensus 65 ~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~r-----f~~-----~~~al~pe 134 (385)
T cd01999 65 VEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVR-----FEL-----AFYALNPD 134 (385)
T ss_pred HHHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHH-----HHH-----HHHhhCCC
Confidence 1 00 0 01 12345899989999999999999999999998 49874 111 12223333
Q ss_pred cccccccccccccccCHHHHHHHHHhCCCCeeeC
Q 006087 228 SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED 261 (662)
Q Consensus 228 ~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eD 261 (662)
.+++.|+... ..++|++++.||+++|||+...
T Consensus 135 l~ViaPlre~--~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 135 LKIIAPWRDW--EFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred CEEEcchhhh--hcCCHHHHHHHHHHcCCCCccc
Confidence 3456776654 2457999999999999998654
No 44
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.38 E-value=1.9e-12 Score=145.22 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=107.7
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHc----CCeEEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM----GIRCEIV 157 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kL----GIp~~i~ 157 (662)
.++++|++|||.||+++++++.. .|. ++.++|+|+|.+.....+.+.++.+|+++ +++++++
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~k---rG~-----------~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v 242 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMR---RGS-----------RVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISV 242 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHH---cCC-----------EEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEE
Confidence 47999999999999999998853 332 78999999998743333455555565555 4566666
Q ss_pred EcccccC---CCCCCCHH-HHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccc
Q 006087 158 RCDWLDG---RPKQGHLQ-EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (662)
Q Consensus 158 ~~~~~~~---~~~~~niE-~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rP 233 (662)
++..... .....+.+ ..+|+.-+..-..+|++.|++.|+||||++|.+-+.+++|.+.+.. .++ .+++|
T Consensus 243 ~~~~~~~~i~~~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~~---~~~----~v~rP 315 (482)
T PRK01269 243 DFEPVVGEILEKVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDNV---TDT----LILRP 315 (482)
T ss_pred ecHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhhh---cCC----ceecC
Confidence 6432111 00001111 1445455555589999999999999999999999999998774311 112 25678
Q ss_pred cccccccccCHHHHHHHHHhCCCCeeeCCCCC
Q 006087 234 YAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 234 lL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
++.. .|.||..+|++.|+.....++.+
T Consensus 316 Li~~-----dK~EIi~~a~~ig~~~~s~~~p~ 342 (482)
T PRK01269 316 LIAM-----DKEDIIDLAREIGTEDFAKTMPE 342 (482)
T ss_pred CcCC-----CHHHHHHHHHHhCChhhcccCCC
Confidence 7754 58999999999998544445543
No 45
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.34 E-value=1.3e-11 Score=126.48 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=105.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~~ 161 (662)
++++|++|||.||+++++++.+ .+ .+++++|+|+|.|. ..|.+.++++|+++||+ |+++++++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~---~~-----------~~v~alt~dygq~~--~~El~~a~~ia~~~gi~~h~vid~~~ 65 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ---QY-----------DEVHCVTFDYGQRH--RAEIDVARELALKLGARAHKVLDVTL 65 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh---cC-----------CeEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4799999999999999988753 22 16899999999885 46888899999999996 99998886
Q ss_pred ccC--C----------CCC----C---CHHHHHHHHHHHHHHH-HHHHcCCcccccccccChhh------HHHHHH---h
Q 006087 162 LDG--R----------PKQ----G---HLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHADDQA------ELFILR---L 212 (662)
Q Consensus 162 ~~~--~----------~~~----~---niE~~AR~~RY~~L~e-~A~e~G~d~LatGHhaDDqa------ET~Lmr---L 212 (662)
... . +.. . +..--+|...+-.+.. +|...|++.|++|-|++|.. ..|+-. +
T Consensus 66 l~~l~~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~ 145 (231)
T PRK11106 66 LNELAVSSLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHA 145 (231)
T ss_pred cccccccccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHH
Confidence 431 0 100 0 1112478888888776 89999999999999999853 222222 1
Q ss_pred hc-cCCCcCccccccccccccccccccccccCHHHHHHHHHhCC-CCe
Q 006087 213 SR-NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN-RDW 258 (662)
Q Consensus 213 ~R-GsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~g-I~w 258 (662)
++ |+ .....+..|++. ++|.||+.++++.| +||
T Consensus 146 ~~~~~--------~~~i~I~aPl~~-----lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 146 VSLGM--------AKDIRFETPLMW-----LNKAETWALADYYGQLDL 180 (231)
T ss_pred HHhcc--------CCCcEEEecCCC-----CCHHHHHHHHHHcCCccc
Confidence 11 11 000225667765 56899999999999 888
No 46
>PRK13980 NAD synthetase; Provisional
Probab=99.34 E-value=2.3e-11 Score=126.53 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=114.4
Q ss_pred chHHHHHHH----HHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH
Q 006087 62 DMTKYREAF----SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (662)
Q Consensus 62 ~~~~~~~~f----~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~ 137 (662)
+.+++.+.+ ++.+...+. ++|+||+|||+||+++++++.+.... .++.++|++++.. +.
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g~---~~vvv~lSGGiDSsv~a~l~~~~~~~------------~~v~av~~~~~~~--~~ 71 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAGA---KGVVLGLSGGIDSAVVAYLAVKALGK------------ENVLALLMPSSVS--PP 71 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcCC---CcEEEECCCCHHHHHHHHHHHHHhCc------------cceEEEEeeCCCC--CH
Confidence 444444444 444444332 68999999999999999998764211 1688999999964 45
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcccccC-----CCC--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHH
Q 006087 138 EEANIVSHRVSDMGIRCEIVRCDWLDG-----RPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (662)
Q Consensus 138 ~Ea~~V~~~c~kLGIp~~i~~~~~~~~-----~~~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lm 210 (662)
.+.+.++++|+.+||++++++++.... -+. ....+..+.++|+..|..+|+++|+.+|.||.. .|..+
T Consensus 72 ~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~----sE~~~- 146 (265)
T PRK13980 72 EDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK----SELLL- 146 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH----hHHHh-
Confidence 678889999999999999998753210 011 123567788899999999999999888877633 33321
Q ss_pred HhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCC
Q 006087 211 RLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRS 266 (662)
Q Consensus 211 rL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d 266 (662)
.-++ ..|=.+ ..+.|+. .+.|.+|+..++..|+| +++-|...+
T Consensus 147 --G~~t-~~gD~~-----~~l~Pl~-----~l~K~eV~~la~~lgip~~i~~k~psa~ 191 (265)
T PRK13980 147 --GYFT-KYGDGA-----VDLNPIG-----DLYKTQVRELARHLGVPEDIIEKPPSAD 191 (265)
T ss_pred --CCcc-CCCCcc-----cCcccCC-----CCcHHHHHHHHHHHCchHHHhCCCCCcC
Confidence 1111 111000 1245664 45688999999999999 566666555
No 47
>PRK08576 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=136.76 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=101.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.+|+||+|||+||++|++++.+.. + .+.++|+|.|.- .++..++++++|+++||++++...+..
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~--~------------~V~aV~iDTG~e--~pet~e~~~~lae~LGI~lii~~v~~~ 298 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAF--G------------DVTAVYVDTGYE--MPLTDEYVEKVAEKLGVDLIRAGVDVP 298 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhC--C------------CCEEEEeCCCCC--ChHHHHHHHHHHHHcCCCEEEcccCHH
Confidence 489999999999999999886531 1 367999999973 456678899999999999988333211
Q ss_pred cC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccc
Q 006087 163 DG---RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (662)
Q Consensus 163 ~~---~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r 239 (662)
.. .......+..|...+++.|.++++++|++++++||. +|+..+--+....-..-.+..++ ..++|+..
T Consensus 299 ~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R-~dES~~R~~~p~v~~~~~~~~~v----~rI~PL~~--- 370 (438)
T PRK08576 299 MPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR-DGESARRRLRPPVVERKTNFGKI----LVVMPIKF--- 370 (438)
T ss_pred HHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee-HHHhHHhhcCCcccccccCCCCe----EEEeChhh---
Confidence 10 010112345688889999999999999999999996 55544321110000000011111 13566664
Q ss_pred cccCHHHHHHHHHhCCCCee
Q 006087 240 DDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 240 ~~i~k~eI~~ya~~~gI~w~ 259 (662)
++..+|..|+..+|+|+.
T Consensus 371 --Wte~DV~~YI~~~gLP~n 388 (438)
T PRK08576 371 --WSGAMVQLYILMNGLELN 388 (438)
T ss_pred --CCHHHHHHHHHHhCCCCC
Confidence 467899999999999973
No 48
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.31 E-value=1.6e-11 Score=126.22 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHH
Q 006087 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (662)
Q Consensus 66 ~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~ 145 (662)
+...+++.+...+ .++|+||+|||+||+++++++.+.... .++.+++++++.. +..+.+.+++
T Consensus 10 l~~~l~~~~~~~~---~~~vvv~lSGGiDSs~~a~la~~~~~~------------~~v~~~~~~~~~~--~~~~~~~a~~ 72 (248)
T cd00553 10 LVLFLRDYLRKSG---FKGVVLGLSGGIDSALVAALAVRALGR------------ENVLALFMPSRYS--SEETREDAKE 72 (248)
T ss_pred HHHHHHHHHHHhC---CCCEEEeCCCcHHHHHHHHHHHHHhCc------------ccEEEEECCCCCC--CHHHHHHHHH
Confidence 3344445555433 367999999999999999999764321 2688999998864 3568888999
Q ss_pred HHHHcCCeEEEEEcccccC------C------CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh
Q 006087 146 RVSDMGIRCEIVRCDWLDG------R------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (662)
Q Consensus 146 ~c~kLGIp~~i~~~~~~~~------~------~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~ 213 (662)
+|+.+||++++++++.... . +.....+..+.++|...|..+|+++|+.++.||| ..|+++....
T Consensus 73 ~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn----~~E~~~G~~t 148 (248)
T cd00553 73 LAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN----KSELLLGYFT 148 (248)
T ss_pred HHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc----HhHHHhCCee
Confidence 9999999999988754221 0 0011235566778999999999999998888887 5676542211
Q ss_pred ccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 214 RNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 214 RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
. .|-. ...++|+.. +.|.+|+.+|+..|+|.
T Consensus 149 ~-------~gd~--~~~i~Pl~~-----l~K~eV~~la~~~~ip~ 179 (248)
T cd00553 149 K-------YGDG--AADINPIGD-----LYKTQVRELARYLGVPE 179 (248)
T ss_pred c-------cCCc--ccCccccCC-----CcHHHHHHHHHHHCchH
Confidence 1 1110 124566654 45889999999999885
No 49
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.31 E-value=9.5e-12 Score=133.95 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=102.9
Q ss_pred hhhhccCCCCccccccchHHHHHHHHHHHHHcC-CCCC-CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcE
Q 006087 46 RLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAG-LKPH-HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123 (662)
Q Consensus 46 ~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~-i~~~-~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L 123 (662)
..+|+.=..+.-..+++..+-.+++.+.+.... -..+ -.++||||||+||++++++++.. .| .++
T Consensus 21 ~GvC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~--~g-----------l~~ 87 (343)
T TIGR03573 21 DGVCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKK--LG-----------LNP 87 (343)
T ss_pred CCCchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHH--hC-----------Cce
Confidence 456654444443344555554555665555432 1111 46999999999999999888532 22 157
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCC-------CCCCCHHHHHHHHHHHHHHHHHHHcCCcccc
Q 006087 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196 (662)
Q Consensus 124 ~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~-------~~~~niE~~AR~~RY~~L~e~A~e~G~d~La 196 (662)
.|+|+|+|+. ++.+.+.++++|+++|++++++..++.... ...++++..|...++..+.++|+++|+.+|+
T Consensus 88 l~vt~~~~~~--~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il 165 (343)
T TIGR03573 88 LLVTVDPGWN--TELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLII 165 (343)
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEE
Confidence 8899999996 456677899999999999999988754311 1234567778889999999999999999999
Q ss_pred cccccC
Q 006087 197 IAHHAD 202 (662)
Q Consensus 197 tGHhaD 202 (662)
+|||+|
T Consensus 166 ~G~~~d 171 (343)
T TIGR03573 166 WGENIA 171 (343)
T ss_pred eCCCHH
Confidence 999998
No 50
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.6e-11 Score=126.84 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=117.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEE-eC------CCCCCcHHHHHHHHHHHHHcCCe
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV-DH------GLREESKEEANIVSHRVSDMGIR 153 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhV-DH------GLR~eS~~Ea~~V~~~c~kLGIp 153 (662)
.-++|+||+|||+||.+.++||+. +|+ ++.++++ |+ |-+.-.+.|.+.|+..|++++||
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~---~g~-----------~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~ 69 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA---RGY-----------NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIP 69 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh---cCC-----------CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCe
Confidence 347899999999999999999863 443 6778875 33 32434567888999999999999
Q ss_pred EEEEEccccc-----------CCC-CCCCHHHHH-HHHHHHHHHHHH-HHcCCcccccccccChhhHHHH---HHhhccC
Q 006087 154 CEIVRCDWLD-----------GRP-KQGHLQEAA-RDMRYRLFQKVC-IQHQIGVLLIAHHADDQAELFI---LRLSRNS 216 (662)
Q Consensus 154 ~~i~~~~~~~-----------~~~-~~~niE~~A-R~~RY~~L~e~A-~e~G~d~LatGHhaDDqaET~L---mrL~RGs 216 (662)
++.+++..+. +.. ...|+.--| |.++++.|.++| .+.|+|+|+|||+|.-..|... .+|..+.
T Consensus 70 ~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~ 149 (377)
T KOG2805|consen 70 LHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISK 149 (377)
T ss_pred eEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecc
Confidence 9999875221 111 122433334 788899555555 5689999999999865444321 2233333
Q ss_pred CCc-----CccccccccccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 217 GVL-----GLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 217 Gi~-----GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
... .|++|.... +.. +.+|...++|.|+...|++.|++-.+.|..+...|.
T Consensus 150 d~~KDQt~FL~~in~~~--L~r-~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICFv 205 (377)
T KOG2805|consen 150 DMVKDQTYFLSTINQTQ--LKR-LLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICFV 205 (377)
T ss_pred cccCCceeEeecccHHH--HHh-hhccCcccCHHHHHHHHHhcCCccccCcccceeEEe
Confidence 211 244443221 222 334567788999999999999998888888887774
No 51
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.22 E-value=2.9e-10 Score=120.21 Aligned_cols=159 Identities=17% Similarity=0.029 Sum_probs=108.4
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
+.+|++|||+||+|||||+.+....+ ...+.++|||.|.- -.+-.+++.++|+++|+++++.......
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~----------~~p~~vl~IDTG~~--F~Et~efrd~~a~~~gl~l~v~~~~~~~ 88 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPG----------PLPFPLLHVDTGWK--FREMIAFRDHMVAKYGLRLIVHSNEEGI 88 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhccc----------CCCeEEEEEecCCC--CHHHHHHHHHHHHHhCCCEEEEechhhh
Confidence 46889999999999999997653211 12567899999983 4566789999999999999998764321
Q ss_pred C--C-CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh--ccCCCcC--ccccccc---------
Q 006087 164 G--R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS--RNSGVLG--LAGMAFS--------- 227 (662)
Q Consensus 164 ~--~-~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~--RGsGi~G--LaGM~~~--------- 227 (662)
. . +...+....|...+...|.+.++++|++++++||..||.....=+++. |.+...+ -..-|..
T Consensus 89 ~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~~ 168 (294)
T TIGR02039 89 ADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRIS 168 (294)
T ss_pred hcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccccCccccCchhhhccccccc
Confidence 1 1 112234557788888999999999999999999999998765433322 1111000 0000000
Q ss_pred ---cccccccccccccccCHHHHHHHHHhCCCCee
Q 006087 228 ---SQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 228 ---~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
.--+.|++ +++..+|..|+..+|||+.
T Consensus 169 ~g~~~RV~PL~-----~WTe~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 169 KGESVRVFPLS-----NWTELDIWRYIAAENIPIV 198 (294)
T ss_pred cCCcEEEechh-----hCCHHHHHHHHHHcCCCCC
Confidence 00122433 5678999999999999984
No 52
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.18 E-value=1.2e-10 Score=117.67 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~ 162 (662)
|++|.+|||.||++++++++. ++ .++.++|||||.| ...|.+.++++|+++|+ +|+++++++.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~---~~-----------~~v~al~~~YGq~--~~~El~~a~~i~~~l~v~~~~~i~l~~~ 64 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKK---EG-----------YEVYALTFDYGQR--HRRELEAAKKIAKKLGVKEHEVIDLSFL 64 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHH---H------------SEEEEEEEESSST--TCHHHHHHHHHHHHCT-SEEEEEE-CHH
T ss_pred CEEEEeCCCHHHHHHHHHHHH---cC-----------CeEEEEEEECCCC--CHHHHHHHHHHHHHhCCCCCEEeeHHHH
Confidence 689999999999999998763 22 2789999999999 35788899999999999 9999998842
Q ss_pred cC-C-----CCCCCHHH----------HHHHHHHHHHH----HHHHHcCCcccccccccChh------hHHHHHHhhccC
Q 006087 163 DG-R-----PKQGHLQE----------AARDMRYRLFQ----KVCIQHQIGVLLIAHHADDQ------AELFILRLSRNS 216 (662)
Q Consensus 163 ~~-~-----~~~~niE~----------~AR~~RY~~L~----e~A~e~G~d~LatGHhaDDq------aET~LmrL~RGs 216 (662)
.. . .....++. .=-..|..+|. .+|...|++.|++|.|.+|. -..|+.++.+--
T Consensus 65 ~~~~~s~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~ 144 (209)
T PF06508_consen 65 KEIGGSALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLL 144 (209)
T ss_dssp HHCSCHHHHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHH
T ss_pred HhhCCCcccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHH
Confidence 21 0 00001111 11123444444 46778999999999999884 244544432210
Q ss_pred CCcCccccccccccccccccccccccCHHHHHHHHHhCCCCeeeCCCCC
Q 006087 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 217 Gi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
. +. ....-.+..|++. ++|.||...+.+.|.+|-.--|=+
T Consensus 145 ~---~~-~~~~v~i~~P~~~-----~tK~eiv~~~~~lg~~~~~T~SCy 184 (209)
T PF06508_consen 145 N---LG-EGGPVRIETPLID-----LTKAEIVKLGVELGVPLELTWSCY 184 (209)
T ss_dssp H---HH-HTS--EEE-TTTT-------HHHHHHHHHHTTHHHHH-B-ST
T ss_pred H---hc-CCCCEEEEecCCC-----CCHHHHHHHHHHcCCCHHHccCCC
Confidence 0 00 1001124566665 468899999999998775544443
No 53
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=99.18 E-value=4.4e-11 Score=102.71 Aligned_cols=74 Identities=27% Similarity=0.363 Sum_probs=62.6
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccC
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~ 164 (662)
|+|++|||+||+++++++.++...+ .++.++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~-----------~~~~~~~~~----------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGG-----------PEVVALVVV----------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcC-----------CCEEEEEeH-----------------------------------
Confidence 6899999999999999998764221 267888888
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCC
Q 006087 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG 217 (662)
Q Consensus 165 ~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsG 217 (662)
.||+.+.++++++|+++|++|||.+|++|+.++++..+.+
T Consensus 35 -------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~ 74 (86)
T cd01984 35 -------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLV 74 (86)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhh
Confidence 8999999999999999999999999999999887544433
No 54
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.14 E-value=4.5e-10 Score=115.35 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=102.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
++|+|++|||+||+|||+|+.+. + .++.++++|+|. +.++-.++++++++++|++++++..+..
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~---~-----------~~i~vvfiDTG~--~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV---D-----------PDIPVIFLDTGY--LFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc---C-----------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 56999999999999999999753 1 146789999998 5677788999999999999999876432
Q ss_pred cC-------CCCC---CCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccc
Q 006087 163 DG-------RPKQ---GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 163 ~~-------~~~~---~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~r 232 (662)
.. .... .+.+..|...+..-|.+++++.++ +++||..||-..--.+.... ..+ +. .-+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R~~~~~~~---~~~--~~----~rv~ 173 (241)
T PRK02090 105 AAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTRANLPVLE---IDG--GR----FKIN 173 (241)
T ss_pred HHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchhccCceee---ecC--Ce----EEEe
Confidence 10 0001 245678899999999999998876 88999988743211111000 001 11 1234
Q ss_pred ccccccccccCHHHHHHHHHhCCCCee
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
|+.. ++..+|..|+..+|||+.
T Consensus 174 Pi~~-----Wt~~dV~~Yi~~~~lp~~ 195 (241)
T PRK02090 174 PLAD-----WTNEDVWAYLKEHDLPYH 195 (241)
T ss_pred ehhh-----CCHHHHHHHHHHcCCCCC
Confidence 5554 468899999999999983
No 55
>PTZ00323 NAD+ synthase; Provisional
Probab=99.05 E-value=4.9e-09 Score=111.08 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=101.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
.++++||+|||+||.+++.++.+..+... .+ ...++++.-.. ..++.+.+.++++|+.+||++++++++.
T Consensus 46 ~~~vVVglSGGVDSav~aaLa~~alg~~~------~~---~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~ 115 (294)
T PTZ00323 46 LKGCVTSVSGGIDSAVVLALCARAMRMPN------SP---IQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTE 115 (294)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhcccc------CC---ceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 46899999999999999999886543210 00 12233344332 2467788899999999999999998874
Q ss_pred ccC------C-----C----CCCCHHHHHHHHHHHHHHHHHHHcCCccccccc-ccChhhHHHHHHhhccCCCcCccccc
Q 006087 162 LDG------R-----P----KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH-HADDQAELFILRLSRNSGVLGLAGMA 225 (662)
Q Consensus 162 ~~~------~-----~----~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGH-haDDqaET~LmrL~RGsGi~GLaGM~ 225 (662)
... . . ..++.+...|...--.+.+.+.+.|.+.|+.|. |++|.... =+.-..|.|...
T Consensus 116 l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~-Gy~t~~GDg~~d----- 189 (294)
T PTZ00323 116 IHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDGYL-GYFCKAGDGVVD----- 189 (294)
T ss_pred HHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhhHh-chHhhcCCCCcC-----
Confidence 320 0 0 011233333443333355566678999999999 99996332 111222322111
Q ss_pred cccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCCc
Q 006087 226 FSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSPL 268 (662)
Q Consensus 226 ~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~~ 268 (662)
+-|.. .+.|.+|+.+++..|+| .++-|...+..
T Consensus 190 -----~~pia-----~L~K~eVr~LAr~l~lp~~i~~kppSA~L~ 224 (294)
T PTZ00323 190 -----VQLIS-----DLHKSEVFLVARELGVPENTLQAAPSADLW 224 (294)
T ss_pred -----chhhc-----CCcHHHHHHHHHHcCCCHHHhcCCCCcCcC
Confidence 12332 45689999999999999 67777766643
No 56
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.01 E-value=2.6e-09 Score=108.48 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=105.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.+.+|-+|||.||+++++++++ ++. +++++++|||.|+ ..|.+.++++|+++||+++++++++.
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~---~~~-----------ev~alsfdYGQrh--~~Ele~A~~iak~lgv~~~iid~~~~ 66 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKK---EGY-----------EVHALTFDYGQRH--RKELEAAKELAKKLGVPHHIIDVDLL 66 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHh---cCC-----------EEEEEEeeCCCCc--HHHHHHHHHHHHHcCCCeEEechhHH
Confidence 5789999999999999988753 322 7999999999997 67899999999999999999998875
Q ss_pred cCC---CCC-CC--H------HH-------HHHHHHHHH-HHHHHHHcCCcccccccccChhh------------HHHHH
Q 006087 163 DGR---PKQ-GH--L------QE-------AARDMRYRL-FQKVCIQHQIGVLLIAHHADDQA------------ELFIL 210 (662)
Q Consensus 163 ~~~---~~~-~n--i------E~-------~AR~~RY~~-L~e~A~e~G~d~LatGHhaDDqa------------ET~Lm 210 (662)
... ... ++ + ++ -+|..-+-. -.-+|...|++.|++|-|..|-. -..++
T Consensus 67 ~~~~~saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~ 146 (222)
T COG0603 67 GEIGGSALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEAL 146 (222)
T ss_pred hhcCCCcCcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHHHHHHH
Confidence 411 100 00 1 11 124443322 23467789999999999998752 22344
Q ss_pred HhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCCeeeCCCCC
Q 006087 211 RLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 211 rL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
++..+.|+.+ +..|+.. ++|.+|...+.+.|.++-..-|=+
T Consensus 147 ~l~~~~~~~~---------i~aPl~~-----l~Ka~iv~l~~elg~~~~~T~SCY 187 (222)
T COG0603 147 NLGTEKGVRI---------IHAPLME-----LTKAEIVKLADELGVPLELTWSCY 187 (222)
T ss_pred HhhccCCccE---------EeCCeee-----ccHHHHHHHHHHhCCcchhceEEe
Confidence 5544444332 2456654 468899989999998775444433
No 57
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.00 E-value=1.3e-09 Score=118.59 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=120.6
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
..|...+|+|.++|+ +-.-.++=+..+.+.++ ..+|++++|||+||+++..|+.++...+
T Consensus 198 ~nFl~~vc~~~~n~t--menre~e~I~~i~k~vG------~~~Vl~~vSGgvdStV~a~Ll~~alg~~------------ 257 (552)
T KOG1622|consen 198 KNFLFDVCGCSGNFT--MENREEECINEIRKWVG------DYKVLVAVSGGVDSTVCAALLRRALGPD------------ 257 (552)
T ss_pred HHHHHHHcCCccCcc--hhhhhHHHHHHHHHHhc------ccceEEEecCCchHHHHHHHHHHhhCCC------------
Confidence 668889999999999 43333333344444443 3789999999999999999988754321
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCC--CCHHHHHHHHHHH---HHHHHHH----HcCC
Q 006087 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYR---LFQKVCI----QHQI 192 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~--~niE~~AR~~RY~---~L~e~A~----e~G~ 192 (662)
+++|+|||.|+- ...|++.|++...++||++++++....+..... .+.|+....+-.. .+...+. +++-
T Consensus 258 R~~ai~vdNG~m--rk~Ea~~V~~tl~~lgi~i~v~~as~~f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~l~~k~~~ 335 (552)
T KOG1622|consen 258 RVHAIHVDNGFM--RKKEAEQVEKTLVYLGIPITVVDASETFLSKLKGVTDPEEKRKIIGRTFIKVFDPVASELNKKHGE 335 (552)
T ss_pred ceEEEEecccch--hhhHHHHHHHHHHHcCCceEEeechHHHHHhhcccCCHHHhceecccceeeeCcHHHHHhhhccCc
Confidence 689999999963 246778899988889999999987766543222 2555543222221 1223333 3333
Q ss_pred --cccccccccChhhHHHHHHhhccCCCc-------Ccccccccc----ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 193 --GVLLIAHHADDQAELFILRLSRNSGVL-------GLAGMAFSS----QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 193 --d~LatGHhaDDqaET~LmrL~RGsGi~-------GLaGM~~~~----~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
.++|.|.-..|.+|... ..|+|.. ...|+.... +++.|+ .++-++|++...+.+|+|-
T Consensus 336 ~~~flaQgtL~Pd~ieS~s---~~g~~~a~tIKThhn~~~L~r~lrklgK~iepl-----k~~~kDEvr~lgk~lGlp~ 406 (552)
T KOG1622|consen 336 KESFLAQGTLRPDLIESAS---VYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPL-----KDFHKDEVRELGKDLGLPE 406 (552)
T ss_pred cceeeecccccchhhhhcc---ccCCchhhhhhcccccchHHHHHHHhcccCchh-----HHHHHHHHHHhhhhcCCch
Confidence 38999999999999753 3444311 011121111 123333 3455788999999999874
No 58
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.91 E-value=9.1e-09 Score=103.27 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe-CCC-CCCcHHHHHHHHHHHHHcC----CeEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-HGL-REESKEEANIVSHRVSDMG----IRCE 155 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD-HGL-R~eS~~Ea~~V~~~c~kLG----Ip~~ 155 (662)
..|+++.+|||.||.+.++++. ++|. ++.++|++ +.+ .+.+.+.+..+.+...+++ ++++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~---krG~-----------~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~ 68 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMM---KRGC-----------EVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLY 68 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHH---CBT------------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEE
T ss_pred CceEEEEecCCccHHHHHHHHH---HCCC-----------EEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEE
Confidence 4689999999999999999885 3442 79999998 222 2334444444444444444 5677
Q ss_pred EEEcccccC----CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 156 IVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 156 i~~~~~~~~----~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
++++..... .....+.+-.||..-|+...++|++.|++.|+||..+...+-..+-||.-= ....++ .++
T Consensus 69 ~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i---~~~~~~----pIl 141 (197)
T PF02568_consen 69 VVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVI---ESASDL----PIL 141 (197)
T ss_dssp EECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHH---GGG--S-----EE
T ss_pred EECcHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhh---hcccCC----cee
Confidence 766543211 112346788899999999999999999999999999988765444444211 111122 278
Q ss_pred cccccccccccCHHHHHHHHHhCCC
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNR 256 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI 256 (662)
||++.+ .|+||..+|++.|.
T Consensus 142 RPLig~-----dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 142 RPLIGF-----DKEEIIEIARKIGT 161 (197)
T ss_dssp -TTTT-------HHHHHHHHHHTT-
T ss_pred CCcCCC-----CHHHHHHHHHHhCc
Confidence 898864 58999999999984
No 59
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.90 E-value=2.3e-08 Score=106.54 Aligned_cols=160 Identities=11% Similarity=-0.007 Sum_probs=103.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
+++++++|||+||+|||+|+.+....+ + ..+-++|||.|. +-++-.+|+.++++++|+++++......
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~--------~--~~~pvl~VDTG~--~FpEt~efrD~~a~~~gl~Liv~~~~~~ 105 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT--------R--PPFPLLHVDTTW--KFREMIDFRDRRAKELGLDLVVHHNPDG 105 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc--------C--CCeeEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEecChHH
Confidence 467999999999999999997653211 1 146689999997 3456678899999999999988754322
Q ss_pred cCC---CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh--ccCC--CcCccccccccc------
Q 006087 163 DGR---PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS--RNSG--VLGLAGMAFSSQ------ 229 (662)
Q Consensus 163 ~~~---~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~--RGsG--i~GLaGM~~~~~------ 229 (662)
... +-..+....|...+-..|.+...++|++.+++|+..||-..-.=++++ |... .+--.+-|+...
T Consensus 106 ~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~~~wD~~~qrPelw~~~n~~~ 185 (312)
T PRK12563 106 IARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLYNARL 185 (312)
T ss_pred HHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccccccCccccChhhhhhccccc
Confidence 111 111134455666666899999999999999999999986543222221 1110 000000010000
Q ss_pred ------cccccccccccccCHHHHHHHHHhCCCCee
Q 006087 230 ------IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 230 ------i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
-+.|++ .++..+|..|...++||+.
T Consensus 186 ~~g~~~RV~PL~-----~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 186 RRGESLRVFPLS-----NWTELDVWQYIAREKIPLV 216 (312)
T ss_pred cCCceEEEecch-----hCCHHHHHHHHHHcCCCCC
Confidence 123333 5678999999999999983
No 60
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.85 E-value=4.3e-08 Score=98.06 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=96.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCc----HHHHHHHHHHHHHcCCeEEEEEc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS----~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
|++|++|||+||+++++++.+ .|. ++.+++++......+ ..+.+.+++.|+.+|||++++.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~---~G~-----------~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE---EGH-----------EVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH---cCC-----------EEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 589999999999999998864 332 678888775543322 22566789999999999998876
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccc
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r 239 (662)
+. +.+.. ...-+..+.+++++ |++.|+.|.+.+|.--+..-+++...|+. .+-|+....
T Consensus 67 ~~--------~~e~~-~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~----------~~~PLW~~~- 125 (194)
T cd01994 67 SG--------EEEDE-VEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLE----------PLAPLWGRD- 125 (194)
T ss_pred CC--------CchHH-HHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCE----------EEecccCCC-
Confidence 31 11122 24556777787777 99999999999998877777777776543 234555432
Q ss_pred cccCHHHHHHHHHhCCCCeeeCCCC
Q 006087 240 DDLKNHSILLICQGGNRDWVEDPTN 264 (662)
Q Consensus 240 ~~i~k~eI~~ya~~~gI~w~eDpSN 264 (662)
..++..-.-+.|+..+--..+
T Consensus 126 ----~~~ll~e~~~~g~~~~iv~v~ 146 (194)
T cd01994 126 ----QEELLREMIEAGFKAIIIKVA 146 (194)
T ss_pred ----HHHHHHHHHHcCCeEEEEEec
Confidence 234443344667665544333
No 61
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=98.75 E-value=2.7e-08 Score=94.97 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=86.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
.|+|++|||+||+|+|+|+.+... ++.++|+|+|. +.++-.++++++++++|+++++.......
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~--------------~~~vv~~dtg~--e~p~t~~~~~~~~~~~~~~i~~~~~~~~~ 64 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR--------------KVPVVFIDTGY--EFPETYEFVDELAKRYGIPIIVYRPPETF 64 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT--------------TCEEEEEE-ST--B-HHHHHHHHHHHHHTTCEEEEEETTSHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC--------------CCcEEEEecCc--cCHHHHHHHHHHHhhhhhhhhhcccccch
Confidence 379999999999999999976542 23588999997 56777789999999999997776554321
Q ss_pred CC-----C-CCCCHHH-HHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccccc
Q 006087 164 GR-----P-KQGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (662)
Q Consensus 164 ~~-----~-~~~niE~-~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~ 236 (662)
.. . .....+. .+...+-+-+.++.++++...+++|--+|+-..-...+.....+ ..+. ...+.|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~R~~~~~~~~~~-----~~~~-~~~~~Pi~- 137 (174)
T PF01507_consen 65 EQRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPRRAKLPMFEFDE-----DNPK-IIRVYPIA- 137 (174)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTGCCGSSSEEEET-----TTTS-EEEE-TTT-
T ss_pred hhccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhhhhhchhhhccc-----ccCC-EEEEEehh-
Confidence 10 0 0111222 34556667788888899989999999888744311111111000 0000 00133554
Q ss_pred ccccccCHHHHHHHHHhCCCCe
Q 006087 237 SCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 237 ~~r~~i~k~eI~~ya~~~gI~w 258 (662)
+.++++|..|.+++|+++
T Consensus 138 ----~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 138 ----DWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp ----T--HHHHHHHHHHHT--B
T ss_pred ----hCCHHHHHHHHHHhcCCC
Confidence 457899999999999986
No 62
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.67 E-value=3.6e-08 Score=100.98 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEE
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~ 158 (662)
+..+.+|++++|||.||++++.++++.... .+.+++++++... .+|..++++.|+.+|++++++.
T Consensus 12 ~~~~~~v~~~LSGGlDSs~va~~~~~~~~~-------------~~~~~~~~~~~~~--~~e~~~a~~~a~~l~~~~~~~~ 76 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLLPE-------------PVKTFSIGFGFEG--SDEREYARRVAEHLGTEHHEVE 76 (269)
T ss_pred hccCCceEEeecccHHHHHHHHHHHHhhCC-------------CCceEEEeeCCCC--CChHHHHHHHHHHhCCcceEEE
Confidence 344688999999999999999988653211 2457788887543 3467889999999999999988
Q ss_pred cccccCCCC-------CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 159 CDWLDGRPK-------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 159 ~~~~~~~~~-------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
++....... ..+....+-...+.++.+.+.+.|++++++||.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 77 FTPADLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 754221000 01111122335566788889999999999999999863
No 63
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.64 E-value=4e-07 Score=94.04 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHH
Q 006087 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144 (662)
Q Consensus 65 ~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~ 144 (662)
.+...+++.+.+.+. ++++||+|||+||.+++.|+++.... .++++++++.+.. +..+.+.+.
T Consensus 4 ~l~~~L~~~~~~~g~---~~vVvglSGGiDSav~A~La~~Alg~------------~~v~~v~mp~~~~--~~~~~~~A~ 66 (242)
T PF02540_consen 4 ALVDFLRDYVKKSGA---KGVVVGLSGGIDSAVVAALAVKALGP------------DNVLAVIMPSGFS--SEEDIEDAK 66 (242)
T ss_dssp HHHHHHHHHHHHHTT---SEEEEEETSSHHHHHHHHHHHHHHGG------------GEEEEEEEESSTS--THHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---CeEEEEcCCCCCHHHHHHHHHHHhhh------------ccccccccccccC--ChHHHHHHH
Confidence 445555666666543 68999999999999999999876522 1688999996653 567778899
Q ss_pred HHHHHcCCeEEEEEcccccCC--C----CC--CCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccC
Q 006087 145 HRVSDMGIRCEIVRCDWLDGR--P----KQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (662)
Q Consensus 145 ~~c~kLGIp~~i~~~~~~~~~--~----~~--~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGs 216 (662)
++|+++||++.+++++..... . .. ...+...-+.|...+..+|..+|+ +++|. ++..|. ++-...--
T Consensus 67 ~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~--lVlgT--~N~sE~-~~Gy~T~~ 141 (242)
T PF02540_consen 67 ELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY--LVLGT--GNKSEL-LLGYFTKY 141 (242)
T ss_dssp HHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE--EEBE----CHHHH-HHTCSHTT
T ss_pred HHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce--EEecC--CcHHHh-hcCccccc
Confidence 999999999999987643210 0 00 011222344777788888888764 55554 445553 22211111
Q ss_pred CCcCccccccccccccccccccccccCHHHHHHHHHhCCCC
Q 006087 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257 (662)
Q Consensus 217 Gi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~ 257 (662)
| +|-. -+.|+- ++.|.||..+++..|+|
T Consensus 142 G-D~~~-------d~~Pi~-----~L~K~eV~~la~~l~ip 169 (242)
T PF02540_consen 142 G-DGAG-------DIAPIA-----DLYKTEVRELARYLGIP 169 (242)
T ss_dssp T-TTSS-------SBETTT-----TS-HHHHHHHHHHTTCG
T ss_pred C-cccc-------cceeeC-----CcCHHHHHHHHHHHhhH
Confidence 1 1111 134444 34588999999999965
No 64
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.59 E-value=6.9e-07 Score=104.61 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHh-CCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEc
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~-~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
..++|+||+|||+||++++.++.+... .|.. ..+++++++ -+ +..|+...+.++++|+.+||+++++++
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~--------~~~v~~v~m-p~-~~ss~~s~~~a~~la~~LGi~~~~i~I 429 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLP--------RKNILAYTM-PG-FATTDRTKNNAVALMKALGVTAREIDI 429 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCC--------cceEEEEEC-CC-CCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 368999999999999988877765432 1210 136888888 34 356677788899999999999999987
Q ss_pred cccc------C-CC-----C--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhcc
Q 006087 160 DWLD------G-RP-----K--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (662)
Q Consensus 160 ~~~~------~-~~-----~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RG 215 (662)
+... . .+ . ....|..+-++|...|..+|.+.|+.+|.|| |..|+.+......
T Consensus 430 ~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg----n~sE~~~Gy~T~~ 495 (679)
T PRK02628 430 RPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG----DLSELALGWCTYG 495 (679)
T ss_pred HHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC----chhhHHhCceecC
Confidence 5321 0 01 0 1123455666788999999999999999999 7899988776654
No 65
>PRK05370 argininosuccinate synthase; Validated
Probab=98.56 E-value=4.5e-07 Score=100.21 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=105.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEE
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIV 157 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~ 157 (662)
+.+++||++|+|||.||.+++.+|++ +++ +|+|+++|-|.- ..+|.+.+++-|.++|. +++++
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e---~~~-----------eVia~~aDvGQ~--~~ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQ---KGA-----------VPYAYTANLGQP--DEDDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHh---cCC-----------eEEEEEEECCCC--CccchHHHHHHHHHhCCCEEEEe
Confidence 45689999999999999999988863 232 799999999942 12456678999999998 79998
Q ss_pred EcccccCC---CC-CCC-------------HHHHHHHHHHHHHHHHHHHcCCcccccccc--cChhh--HHHHHHhhccC
Q 006087 158 RCDWLDGR---PK-QGH-------------LQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQA--ELFILRLSRNS 216 (662)
Q Consensus 158 ~~~~~~~~---~~-~~n-------------iE~~AR~~RY~~L~e~A~e~G~d~LatGHh--aDDqa--ET~LmrL~RGs 216 (662)
++...+.. +. +.| .-..+|.+--..+.++|++.|+++|+-|-+ .|||+ |-.+..
T Consensus 72 Dlr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~a----- 146 (447)
T PRK05370 72 DCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLL----- 146 (447)
T ss_pred ccHHHHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHH-----
Confidence 87654321 10 011 122467777788999999999999977765 47985 433222
Q ss_pred CCcCccccccccccccccccccc--cccCHHHHHHHHHhCCCCeeeC
Q 006087 217 GVLGLAGMAFSSQIFSSYAYSCH--DDLKNHSILLICQGGNRDWVED 261 (662)
Q Consensus 217 Gi~GLaGM~~~~~i~rPlL~~~r--~~i~k~eI~~ya~~~gI~w~eD 261 (662)
+.|...++.|.-.... ..-++++.++||+++|||.-.+
T Consensus 147 -------L~P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~ 186 (447)
T PRK05370 147 -------TNPELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMS 186 (447)
T ss_pred -------hCCCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCcc
Confidence 2333334444332110 0115788888999999997544
No 66
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.53 E-value=9.3e-07 Score=89.92 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=91.3
Q ss_pred EEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEE-EEEEeCCCCCC----cHHHHHHHHHHHHHcCCeEEEEEcc
Q 006087 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLREE----SKEEANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 86 LVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~-AvhVDHGLR~e----S~~Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
++++|||+||+++++++++ +|+ ++. ++|++. .+.+ ...+.+.++..|+.+|||+++++++
T Consensus 1 ~vl~SGGkDS~~al~~a~~---~G~-----------~v~~l~~~~~-~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALE---EGH-----------EVRCLITVVP-ENEESYMFHTPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CeeecCcHHHHHHHHHHHH---cCC-----------EEEEEEEecc-CCCCccccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 4799999999999998864 332 454 446553 2111 1235667899999999999988765
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccccccccc
Q 006087 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240 (662)
Q Consensus 161 ~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~ 240 (662)
+. ...+. ..-+.++.+++++ |++.|++|-+.+|..-+-..+++...|+ + .+.|+...
T Consensus 66 ~~------~~~~~---~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~~gl------~----~~~PLw~~--- 122 (218)
T TIGR03679 66 GE------KEKEV---EDLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICEELGL------K----VFAPLWGR--- 122 (218)
T ss_pred CC------ChHHH---HHHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHhCCC------e----EEeehhcC---
Confidence 31 01111 1144556666555 9999999999998766666666655443 2 45677654
Q ss_pred ccCHHHHHHHHHhCCCCeeeCCCC
Q 006087 241 DLKNHSILLICQGGNRDWVEDPTN 264 (662)
Q Consensus 241 ~i~k~eI~~ya~~~gI~w~eDpSN 264 (662)
.+.++..-+...|+..+--..+
T Consensus 123 --~~~el~~~~~~~G~~~~i~~v~ 144 (218)
T TIGR03679 123 --DQEEYLRELVERGFRFIIVSVS 144 (218)
T ss_pred --CHHHHHHHHHHCCCEEEEEEEe
Confidence 3567777788888887654443
No 67
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.48 E-value=2.3e-06 Score=86.02 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=96.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
++++|++|||+||+|||+|+.+.. . ++.++++|.|+ +-++-.+++.++++.+|+++++...++.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~---~-----------~~~v~f~DTg~--efpeT~efv~~~~~~~~l~i~~~~~~~~ 77 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS---P-----------DIPVIFLDTGY--HFPETYELIDELTERYPLNIKVYKPDLS 77 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC---C-----------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCchh
Confidence 469999999999999999997531 1 35578999998 5566678899999999998887765432
Q ss_pred cC------C-C-CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccc
Q 006087 163 DG------R-P-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (662)
Q Consensus 163 ~~------~-~-~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPl 234 (662)
.. . . -..+....|+..+-.-|.++.++++...+++|--+||-..--.+... + .+ .-.. ..-+.|+
T Consensus 78 ~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R~~~~~~--~-~~---~~~~-~~~v~PI 150 (212)
T TIGR00434 78 LAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSRANLSIL--N-ID---EKFG-ILKVLPL 150 (212)
T ss_pred HHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccccCCcee--e-ec---CCCC-cEEEeeh
Confidence 11 0 0 01133445666666778888888777777888777764221100000 0 00 0000 0013454
Q ss_pred ccccccccCHHHHHHHHHhCCCCe
Q 006087 235 AYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 235 L~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
+ +.+..+|..|+.++|+||
T Consensus 151 ~-----dWt~~dVw~Yi~~~~lp~ 169 (212)
T TIGR00434 151 I-----DWTWKDVYQYIDAHNLPY 169 (212)
T ss_pred h-----hCCHHHHHHHHHHcCCCC
Confidence 4 457899999999999997
No 68
>PRK08557 hypothetical protein; Provisional
Probab=98.47 E-value=2.5e-06 Score=94.67 Aligned_cols=149 Identities=16% Similarity=0.106 Sum_probs=92.9
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcc-
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD- 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~- 160 (662)
+..++|++|||+||+|+++++.+. +. ++.++++|+|+. .++-.++++++++++|+++++...+
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~---~~-----------~i~vvfvDTG~e--fpET~e~ve~v~~~ygl~i~v~~~~~ 244 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV---IP-----------DLEVIFIDTGLE--YPETINYVKDFAKKYDLNLDTLDGDN 244 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh---CC-----------CCEEEEEECCCC--CHHHHHHHHHHHHHhCCCEEEEechH
Confidence 467999999999999999988653 11 457899999984 4555788999999999999887643
Q ss_pred -cc----cCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccc
Q 006087 161 -WL----DGRPKQGHLQEAARDMRYRLFQKVCIQ---HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 161 -~~----~~~~~~~niE~~AR~~RY~~L~e~A~e---~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~r 232 (662)
|. .+.|. ...-..|+..+-.-|.++.++ .+....++|--+++-..-.-+...+.+| ..+...-+.
T Consensus 245 f~~~~~~~G~Ps-~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra~~~~~~~~~------~~~~~~~i~ 317 (417)
T PRK08557 245 FWENLEKEGIPT-KDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRANLDYERKSG------FIDFQTNVF 317 (417)
T ss_pred HHHHHhhccCCc-ccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhccCceecccc------cccCceeEE
Confidence 11 11111 122234455566667777765 2334567787666543321111111111 111010134
Q ss_pred ccccccccccCHHHHHHHHHhCCCCe
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
|++. .+..+|..|+.++++||
T Consensus 318 PI~~-----Wt~~dVW~YI~~~~lp~ 338 (417)
T PRK08557 318 PILD-----WNSLDIWSYIYLNDILY 338 (417)
T ss_pred eccc-----CCHHHHHHHHHHcCCCC
Confidence 5543 45789999999999998
No 69
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.46 E-value=1.7e-06 Score=93.71 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEcc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~ 160 (662)
.+||++|+|||.|.++.+-+|++ ++ | .+++++++|-|.- .+|.+.+++-|.++|.. ++++++.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e---~~--------~--~eVia~tadvGQ~---eed~~~i~eKA~~~Ga~~~~viD~r 67 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKE---KG--------G--AEVIAVTADVGQP---EEDLDAIREKALELGAEEAYVIDAR 67 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHH---hc--------C--ceEEEEEEeCCCC---hHHhHHHHHHHHHhCCceEEEeecH
Confidence 47999999999999999887753 22 1 2799999999963 56788899999999976 8888876
Q ss_pred cccCC----C----C---C---CCHHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCcccc
Q 006087 161 WLDGR----P----K---Q---GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 161 ~~~~~----~----~---~---~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM 224 (662)
..+.. + . . ...-+.||.+--..+-++|++.|++.|+-|-+. |||+--- . +...+
T Consensus 68 eeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe-----~-----~~~al 137 (403)
T COG0137 68 EEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFE-----L-----AILAL 137 (403)
T ss_pred HHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeee-----e-----ehhhh
Confidence 54421 0 0 0 012245788888999999999999999776654 7885210 0 11223
Q ss_pred ccccccccccccccccccCHHHHHHHHHhCCCCeeeC-CCCCC
Q 006087 225 AFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVED-PTNRS 266 (662)
Q Consensus 225 ~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eD-pSN~d 266 (662)
.|..+++.|... -.+.+++..+|++++|||.-.| .++++
T Consensus 138 ~p~lkiiAP~Re---w~~~R~~~i~Ya~~~gipv~~~~~kpyS 177 (403)
T COG0137 138 NPDLKIIAPWRE---WNLTREEEIEYAEEHGIPVKATKEKPYS 177 (403)
T ss_pred CCCcEEEeehhh---hccChHHHHHHHHHcCCCccccCCCCcc
Confidence 333345555442 2455788888999999999666 33444
No 70
>PRK13794 hypothetical protein; Provisional
Probab=98.46 E-value=2.7e-06 Score=95.99 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=95.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcc-
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD- 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~- 160 (662)
+++++||+|||+||+|+|+++.+.. + .++.++++|+|+ +.++..++++++++++|+++++...+
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~--~-----------~~~~vvfiDTG~--efpet~e~i~~~~~~~gl~i~~~~~~~ 311 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKAL--G-----------INFPVLFNDTGL--EFPETLENVEDVEKHYGLEIIRTKSEE 311 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHh--C-----------CCeEEEEEECCC--CChHHHHHHHHHHHhcCCcEEEEchHH
Confidence 4689999999999999999886532 1 146789999998 45667788999999999999887643
Q ss_pred -cc----cCCCCCCCHHHHHHHHHHHHHHHHHHHc--CCcccccccccChhhHHHHHHh-hccCCCcCcccccccccccc
Q 006087 161 -WL----DGRPKQGHLQEAARDMRYRLFQKVCIQH--QIGVLLIAHHADDQAELFILRL-SRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 161 -~~----~~~~~~~niE~~AR~~RY~~L~e~A~e~--G~d~LatGHhaDDqaET~LmrL-~RGsGi~GLaGM~~~~~i~r 232 (662)
|. .+.|. .+....|+..+-.-+.++.++. |....++|--.++-..--.+.. .+..+..| .-.+.
T Consensus 312 f~~~~~~~G~P~-~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~~~~~~~~~~~~-------~~~~~ 383 (479)
T PRK13794 312 FWEKLEEYGPPA-RDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKKPRIWRNPYIKK-------QILAA 383 (479)
T ss_pred HHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcCcccccccCcCC-------cEEEe
Confidence 11 11121 1223345666666677776653 4456677876665432211110 01111111 00134
Q ss_pred ccccccccccCHHHHHHHHHhCCCCe
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
|++ +.+..+|..|+..+++||
T Consensus 384 PI~-----~Wt~~dVw~Yi~~~~lp~ 404 (479)
T PRK13794 384 PIL-----HWTAMHVWIYLFREKAPY 404 (479)
T ss_pred chH-----hCCHHHHHHHHHHcCCCC
Confidence 554 356789999999999998
No 71
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.45 E-value=9.5e-07 Score=96.79 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=88.9
Q ss_pred EEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcccccC
Q 006087 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDG 164 (662)
Q Consensus 86 LVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~~~ 164 (662)
++|+|||.||++++.+|++ ++ + .+++|+++|-|.- ++|.+.+++.|.++|. +++++++...+.
T Consensus 1 VLAySGGLDTS~~l~~L~e---~~--------~--~~Via~~aDlGq~---~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKE---EG--------G--YEVIAVTADLGQP---DEDLEAIEEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp EEE--SSHHHHHHHHHHHH---TT--------T--EEEEEEEEESSST----S-HHHHHHHHHHHT-SEEEEEE-HHHHH
T ss_pred CeeeCCChHHHHHHHHHHh---hc--------C--ceEEEEEEECCCc---HHHHHHHHHHHHhcCCceeeecchHHHHH
Confidence 5899999999999988763 32 1 2899999999973 3567778999999997 999998765432
Q ss_pred C----C----C---CC---CHHHHHHHHHHHHHHHHHHHcCCccccccccc--Chhh--HHHHHHhhccCCCcCcccccc
Q 006087 165 R----P----K---QG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQA--ELFILRLSRNSGVLGLAGMAF 226 (662)
Q Consensus 165 ~----~----~---~~---niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqa--ET~LmrL~RGsGi~GLaGM~~ 226 (662)
. + . .+ ..-..+|.+--+.+-++|++.|+++|+-|-+. |||+ |..+..| .|
T Consensus 65 ~~~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al------------~P 132 (388)
T PF00764_consen 65 EDYIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRAL------------AP 132 (388)
T ss_dssp HHTHHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHH------------ST
T ss_pred HHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHh------------Cc
Confidence 1 0 0 01 01124688888889999999999999766554 8986 3333222 22
Q ss_pred ccccccccccccccccCHHHHHHHHHhCCCCeeeCC
Q 006087 227 SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262 (662)
Q Consensus 227 ~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDp 262 (662)
..+++.|.... .+.+++..+||+++|||.-.++
T Consensus 133 ~l~viaP~Rd~---~~~R~~~i~ya~~~gIpv~~~~ 165 (388)
T PF00764_consen 133 ELKVIAPWRDW---EFSREEEIEYAKKHGIPVPVTK 165 (388)
T ss_dssp TSEEE-GGGHH---HHHHHHHHHHHHHTT----SS-
T ss_pred CCcEecccchh---hhhHHHHHHHHHHcCCCCCCCC
Confidence 22344454332 3447788889999999876553
No 72
>PRK13795 hypothetical protein; Provisional
Probab=98.44 E-value=2.3e-06 Score=99.55 Aligned_cols=150 Identities=14% Similarity=0.035 Sum_probs=94.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++|+||+|||+||+||++|+.+.. . ++.++++|+|+. .++..++++++++++|+++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~---~-----------~~~vvfiDTg~e--fpet~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL---K-----------DFKAFFNNTGLE--FPETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC---C-----------CcEEEEEeCCCC--CHHHHHHHHHHHHHcCCcEEEEcccH
Confidence 4689999999999999999987531 1 357899999984 45677899999999999999887642
Q ss_pred ccCC------CCCCCHHHHHHHHHHHHHHHHHHHcC--CcccccccccChhhHHHHHHh-hccCCCcCcccccccccccc
Q 006087 162 LDGR------PKQGHLQEAARDMRYRLFQKVCIQHQ--IGVLLIAHHADDQAELFILRL-SRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 162 ~~~~------~~~~niE~~AR~~RY~~L~e~A~e~G--~d~LatGHhaDDqaET~LmrL-~RGsGi~GLaGM~~~~~i~r 232 (662)
.+.. +........|+..+-+-+.++.++.. ....++|-..++-..-.-+.. .+.....|. -.+.
T Consensus 307 ~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~~~~~~~~~~~~~~-------~~~~ 379 (636)
T PRK13795 307 AFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAKSPRVWRNPWVPNQ-------IGAS 379 (636)
T ss_pred hHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhhCcccccCCCCCCc-------EEEe
Confidence 2110 00111223345555566666666652 235667887777543221111 011001110 0134
Q ss_pred ccccccccccCHHHHHHHHHhCCCCee
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
|++ +.+..+|..|...+++||.
T Consensus 380 PI~-----~Wt~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 380 PIQ-----DWTALEVWLYIFWRKLPYN 401 (636)
T ss_pred chH-----hCCHHHHHHHHHHhCCCCC
Confidence 554 4567899999999999983
No 73
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.42 E-value=9.3e-07 Score=88.72 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHH
Q 006087 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144 (662)
Q Consensus 65 ~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~ 144 (662)
||++.|.+.+... +..+.+|.+.+|||.||.+++.++++ ..+ ..+.+++++.+-.. ..|...++
T Consensus 1 ~~r~~l~~av~~r-l~~~~~i~~~LSGGlDSs~i~~~~~~--~~~-----------~~~~~~t~~~~~~~--~~e~~~a~ 64 (255)
T PF00733_consen 1 ELRELLEEAVARR-LRSDKPIGILLSGGLDSSAIAALAAR--QGG-----------PPIKTFTIGFEDDD--YDEREYAR 64 (255)
T ss_dssp HHHHHHHHHHHHH-CGCTSEEEEE--SSHHHHHHHHHHHH--TCC-----------SEEEEEEEECSSCC----HHHHHH
T ss_pred CHHHHHHHHHHHH-HhcCCCEEEECCCChhHHHHHHHHHH--hhC-----------CceeEEEEEcCCCc--chhHHHHH
Confidence 4666777777653 33578999999999999999998875 111 15778887776432 23888899
Q ss_pred HHHHHcCCeEEEEEcccccCCC-------CCCCHHH--HHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 145 HRVSDMGIRCEIVRCDWLDGRP-------KQGHLQE--AARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 145 ~~c~kLGIp~~i~~~~~~~~~~-------~~~niE~--~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
+.|+.+|++|+.+.++.....+ ....+.. .+-..-+..+.+.+++.|.+.+++||-+|...
T Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 65 KVARHLGLEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHT-EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHH
T ss_pred HHhcccccccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEecccccccc
Confidence 9999999999888765432100 0001111 22222334456677788999999999998643
No 74
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.32 E-value=1.1e-05 Score=86.92 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHH
Q 006087 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (662)
Q Consensus 66 ~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~ 145 (662)
+.+.+++.+.... ..++|+|++|||+||.++++++.+.... .++.+++++.+. .+.+|.+.++.
T Consensus 19 i~~~l~~~V~~~~--~~~~VvVgLSGGIDSSvvaaLa~~a~g~------------~~v~av~~~~~~--s~~~e~~~A~~ 82 (326)
T PRK00876 19 IRAAIREQVRGTL--RRRGVVLGLSGGIDSSVTAALCVRALGK------------ERVYGLLMPERD--SSPESLRLGRE 82 (326)
T ss_pred HHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHhhCC------------CcEEEEEecCCC--CChHHHHHHHH
Confidence 3344444444422 1248999999999999999988653211 157888888764 34677888999
Q ss_pred HHHHcCCeEEEEEccc
Q 006087 146 RVSDMGIRCEIVRCDW 161 (662)
Q Consensus 146 ~c~kLGIp~~i~~~~~ 161 (662)
+|+.+||++++++++.
T Consensus 83 lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 83 VAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHcCCCEEEEECch
Confidence 9999999999988754
No 75
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.31 E-value=6.6e-06 Score=84.25 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
++++++++|||+||+|+|+|+.+.... ++-+++||.|. +-++-.+++.++.+++|+++.+....-
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~-------------~i~vv~vDTg~--~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEP-------------MIPVIFIDTLY--HFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCC-------------CCCEEEEeCCC--CCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 467999999999999999999865311 34588999997 445667789999999995544443221
Q ss_pred cc---------CCC-CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 162 LD---------GRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 162 ~~---------~~~-~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
.. +.. -..+.+..|+..+-.-|.++.++++.+.+++|--.++-..---+.... .+.-.|+- -+
T Consensus 90 ~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~Ra~~~~~~---~d~~~~~~----kv 162 (226)
T TIGR02057 90 CESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSARANLPVIE---IDEQNGIL----KV 162 (226)
T ss_pred chhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCccccCCcccc---ccCCCCeE----EE
Confidence 00 000 012356667777778888988888888899997665532100000000 00000111 13
Q ss_pred cccccccccccCHHHHHHHHHhCCCCe
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
.|++ ..+..+|..|..+++||+
T Consensus 163 ~Pi~-----~Wt~~dVw~Yi~~~~lP~ 184 (226)
T TIGR02057 163 NPLI-----DWTFEQVYQYLDAHNVPY 184 (226)
T ss_pred eehh-----hCCHHHHHHHHHHcCCCC
Confidence 4554 356789999999999998
No 76
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=8.8e-06 Score=87.21 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHHHH-------cCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEE-EEEeCCCC
Q 006087 62 DMTKYREAFSRRMAM-------AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA-ITVDHGLR 133 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~-------~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~A-vhVDHGLR 133 (662)
+-++|.+.++..++. .+..+.+.+++++|||.-|++||+.++.+.++.. .-.-..++ .+.+ ++.-.+-
T Consensus 35 C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k-~~~~~~~~--tv~v~~~~~~~~- 110 (396)
T KOG2594|consen 35 CDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLK-NKRLRRDF--TVLVLVVFQEFT- 110 (396)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhh-hhhcCcCC--ceEEEEEEEecc-
Confidence 346666666655554 3466778999999999999999998873322210 00001222 2322 2222222
Q ss_pred CCcHHHHHHHHHHHHHc--CCeEEEEEcccc--cC----------------CCC-------CC--CHHHHHHHHHHHHHH
Q 006087 134 EESKEEANIVSHRVSDM--GIRCEIVRCDWL--DG----------------RPK-------QG--HLQEAARDMRYRLFQ 184 (662)
Q Consensus 134 ~eS~~Ea~~V~~~c~kL--GIp~~i~~~~~~--~~----------------~~~-------~~--niE~~AR~~RY~~L~ 184 (662)
++....+..++.-.+. ..++.+.-+... +. +.. .. +-|+.-+.+|-..+.
T Consensus 111 -~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll~ 189 (396)
T KOG2594|consen 111 -DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLLQ 189 (396)
T ss_pred -chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCceeecchhhcccccccccchHHHHHHHHHHHHHH
Confidence 3434444445444332 122222111110 00 000 00 135666888999999
Q ss_pred HHHHHcCCcccccccccChhhHHHHHHhhccCCCc--Ccccccccc-----ccccccccccccccCHHHHHHHHHhCCCC
Q 006087 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL--GLAGMAFSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRD 257 (662)
Q Consensus 185 e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~--GLaGM~~~~-----~i~rPlL~~~r~~i~k~eI~~ya~~~gI~ 257 (662)
.+|.++||+.|+.||+.+|.++-+|-.++.|-|.. -.-..-..+ .++||+- ++.+.||..|+.-.|++
T Consensus 190 ~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLr-----Dl~~~Ei~~y~~l~~l~ 264 (396)
T KOG2594|consen 190 KVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLR-----DLLSLEITSYCLLDGLA 264 (396)
T ss_pred HHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHH-----HHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999887665532 111111111 1334433 45678999999999998
Q ss_pred e
Q 006087 258 W 258 (662)
Q Consensus 258 w 258 (662)
|
T Consensus 265 ~ 265 (396)
T KOG2594|consen 265 Y 265 (396)
T ss_pred c
Confidence 7
No 77
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.28 E-value=2.2e-06 Score=95.80 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHH
Q 006087 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (662)
Q Consensus 64 ~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V 143 (662)
+.+.+.|.+.+... +..+.+|.+.+|||.||.+++.++.+.... ..+.+++++++-..+ .+|..++
T Consensus 236 e~l~~~l~~aV~~r-~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~------------~~~~~~t~~~~~~~~-~~E~~~A 301 (467)
T TIGR01536 236 DELRSLLEDAVKRR-LVADVPVGVLLSGGLDSSLVAAIARREAPR------------GPVHTFSIGFEGSPD-FDESPYA 301 (467)
T ss_pred HHHHHHHHHHHHHH-hccCCceEEEecCChhHHHHHHHHHHhcCC------------CCceEEEEecCCCCC-CChHHHH
Confidence 34555555555443 345678999999999999999888653211 035677887752112 3467789
Q ss_pred HHHHHHcCCeEEEEEcccccCCCC-------CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPK-------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~-------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
++.|+.+|++|+++.++....... ...+..........++.+.++++|++++++||.+|+.
T Consensus 302 ~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDEl 369 (467)
T TIGR01536 302 RKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADEL 369 (467)
T ss_pred HHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchhc
Confidence 999999999999887753211000 0011111223333467788999999999999999984
No 78
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.07 E-value=2.5e-05 Score=81.66 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=98.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
..+++++|||+||+|+++|+.+... ++.++|+|.|+ +-.+-.+++.++++++|+++.+...+..
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~~--------------~~~vif~DTg~--~f~Et~~~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAFP--------------DFPVIFLDTGY--HFPETYEFRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhcC--------------CCcEEEEeCCC--cCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 4489999999999999999875421 25689999997 3456678899999999999887765432
Q ss_pred cCCC-------CCCCHHH-HHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccc
Q 006087 163 DGRP-------KQGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (662)
Q Consensus 163 ~~~~-------~~~niE~-~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPl 234 (662)
.... ...+... .|...+-.-|.++.++++.+.+++|--.|+...-.-++.....+..+ ..--+-|+
T Consensus 104 ~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak~~~~~~~~~~~------~~~rv~Pl 177 (261)
T COG0175 104 VAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKLPVVSFDSEFG------ESIRVNPL 177 (261)
T ss_pred hhhhhhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccccccCceeccccCcC------CeEEEcch
Confidence 2111 0123222 34555556788888888888899998777654433333222221110 00012344
Q ss_pred ccccccccCHHHHHHHHHhCCCCe
Q 006087 235 AYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 235 L~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
. +.+..+|-.|...+++||
T Consensus 178 ~-----~Wt~~dVw~Yi~~~~lp~ 196 (261)
T COG0175 178 A-----DWTELDVWLYILANNLPY 196 (261)
T ss_pred h-----cCCHHHHHHHHHHhCCCC
Confidence 4 467899999999999998
No 79
>PRK13981 NAD synthetase; Provisional
Probab=98.05 E-value=3e-05 Score=88.56 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHcCC-CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHH
Q 006087 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i-~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~ 141 (662)
.+++.+.+...+..+.- ...++++||+|||+||.+++.|+.+.... .+++++++.... .+..+.+
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~------------~~v~~~~~p~~~--~~~~~~~ 325 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA------------ERVRAVMMPSRY--TSEESLD 325 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc------------CcEEEEECCCCC--CCHHHHH
Confidence 34444444444443321 12468999999999999999988653221 157787776432 2345677
Q ss_pred HHHHHHHHcCCeEEEEEcccccC------CC----C--CCCHHHHHHHHHHHHHHHHHHHcCCccccccccc
Q 006087 142 IVSHRVSDMGIRCEIVRCDWLDG------RP----K--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (662)
Q Consensus 142 ~V~~~c~kLGIp~~i~~~~~~~~------~~----~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha 201 (662)
.++++|+.+||++++++++.... .+ . .-..+..-.+.|...|..+|..+|+-++-|||--
T Consensus 326 ~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~s 397 (540)
T PRK13981 326 DAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKS 397 (540)
T ss_pred HHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccC
Confidence 78999999999999988764210 00 0 1112333355677889999999988777777633
No 80
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.81 E-value=0.00013 Score=79.96 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=96.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHH-HHc-----CCeEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV-SDM-----GIRCE 155 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c-~kL-----GIp~~ 155 (662)
..++++-+|||.||=+..+++. +.|. .+.++|++-.-- .+++..+.+..++ ..+ .+.++
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~m---kRG~-----------~v~~v~f~~~p~-~~~~a~~k~~~l~~~~~~~~~~~~~~~ 239 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMM---KRGV-----------EVIPVHFGNPPY-TSEKAREKVVALALLRLTSYGGKVRLY 239 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHH---hcCC-----------EEEEEEEcCCCC-chHHHHHHHHHHHhhhhcccCCceEEE
Confidence 4689999999999999999874 3442 688888853211 2233333334443 222 35566
Q ss_pred EEEcccccC----CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccc--cc
Q 006087 156 IVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS--SQ 229 (662)
Q Consensus 156 i~~~~~~~~----~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~--~~ 229 (662)
++++..... ....+...-.+|+.-|+.-.++|++.|+..|+||-.+...+-..+-||. .+... ..
T Consensus 240 ~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~---------~i~~~t~~p 310 (383)
T COG0301 240 VVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLR---------VIDSVTNTP 310 (383)
T ss_pred EEchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHH---------HHHhccCCc
Confidence 665532211 0111234557899999999999999999999999999988766555542 11111 23
Q ss_pred cccccccccccccCHHHHHHHHHhCC
Q 006087 230 IFSSYAYSCHDDLKNHSILLICQGGN 255 (662)
Q Consensus 230 i~rPlL~~~r~~i~k~eI~~ya~~~g 255 (662)
++||++.. .|+||..+|++.|
T Consensus 311 IlRPLI~~-----DK~eIi~~Ar~Ig 331 (383)
T COG0301 311 VLRPLIGL-----DKEEIIEIARRIG 331 (383)
T ss_pred eeccccCC-----CHHHHHHHHHHhC
Confidence 78998864 5789999999887
No 81
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.75 E-value=0.00017 Score=73.02 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=91.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
-+++||+|||+||+|.+.++.. .+++||.|----.+.-...+...|..+|+.+..+..+..
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~-------------------~g~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~ 121 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRW-------------------AGFTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLE 121 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHh-------------------hceeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHH
Confidence 6899999999999998877642 136788874311223334567888899987766554432
Q ss_pred cCC----CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccccccccc
Q 006087 163 DGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (662)
Q Consensus 163 ~~~----~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~ 238 (662)
... +..-.+|-.|-.+-.....+.+++.+++.+++|.-+. .|. ..+.+..++++-.+- .
T Consensus 122 ~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlLs-----------~G~-----~svy~eD~i~rlnlP-A 184 (255)
T COG1365 122 DIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLLS-----------TGY-----GSVYREDGIFRLNLP-A 184 (255)
T ss_pred HHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccccc-----------ccc-----cceeccCCEEEEccH-H
Confidence 211 1123578888888788888999999999999985322 232 234444455542211 1
Q ss_pred ccccCHHHHHHHHHhCCCCe
Q 006087 239 HDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 239 r~~i~k~eI~~ya~~~gI~w 258 (662)
..-++|.|++.+++.+++..
T Consensus 185 flAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 185 FLALTKDELRSILKWNGYEL 204 (255)
T ss_pred HHhhCcHHHHHHHHhcCccc
Confidence 12457899999999888754
No 82
>PRK06850 hypothetical protein; Provisional
Probab=97.73 E-value=0.00056 Score=77.73 Aligned_cols=168 Identities=12% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CCcH----HHHHHHHHHHHHcCCeEE
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK----EEANIVSHRVSDMGIRCE 155 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~eS~----~Ea~~V~~~c~kLGIp~~ 155 (662)
.+..++||+|||+||+|+|.|+.+.... .+. .+-...+.+++.|.|+- |+-. ...+.++..|++.|+|+.
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~Al~~-lp~----e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~ 107 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNALAG-LPP----EKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPIT 107 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHHHHh-cch----hccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceE
Confidence 3567899999999999999988654322 110 01112578888899973 2211 223445667889999987
Q ss_pred EEEcccc-----------cCCCCCCCHHHHH-HHHHH----HHHHHHHHHcCCcccccccccChhhHHH-HHHhhccCCC
Q 006087 156 IVRCDWL-----------DGRPKQGHLQEAA-RDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELF-ILRLSRNSGV 218 (662)
Q Consensus 156 i~~~~~~-----------~~~~~~~niE~~A-R~~RY----~~L~e~A~e~G~d~LatGHhaDDqaET~-LmrL~RGsGi 218 (662)
+..+.-. .+.|...+---+| ..++- +++.+..+++|-..+++|--.+--+.-- .|......+
T Consensus 108 ~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~RA~~m~~~~~~~- 186 (507)
T PRK06850 108 PHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAARAQVMAKHEIEG- 186 (507)
T ss_pred EEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHHHhhhhhhcccC-
Confidence 6443210 0011001111112 22333 3344444566777788887665432211 011111111
Q ss_pred cCcccccc--ccccccccccccccccCHHHHHHHHHhCCCCee
Q 006087 219 LGLAGMAF--SSQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 219 ~GLaGM~~--~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
..+.--+. ..-.+.|.. +++..+|-.|...++.||-
T Consensus 187 ~rl~~~~~~~~~~v~~PI~-----dWs~dDVW~YL~~~~~P~g 224 (507)
T PRK06850 187 SRLSRHTTLPNAFVYTPIE-----DWSNDDVWKYLLQWENPWG 224 (507)
T ss_pred cceeeccCCCCcEEEeChH-----hCCHHHHHHHHHhcCCCCC
Confidence 01111000 001234443 4567899999999999984
No 83
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.73 E-value=0.00026 Score=74.58 Aligned_cols=159 Identities=14% Similarity=0.023 Sum_probs=88.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHh-CCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRC 159 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~-~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~ 159 (662)
...++||+|||.||.+.+.|+..... .+.. ..+....++++..-+.- .+ +...++..|+.+|+ ++.++++
T Consensus 38 ~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~----~~~~~~~~~~l~mP~~~-~~---~~~da~~la~~lgi~~~~~i~I 109 (268)
T PRK00768 38 LKSLVLGISGGQDSTLAGRLAQLAVEELRAE----TGDDDYQFIAVRLPYGV-QA---DEDDAQDALAFIQPDRVLTVNI 109 (268)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHHhccc----ccCcceeEEEEECCCCC-cC---CHHHHHHHHHhcCCCeeEEEEC
Confidence 46799999999999999988776543 2110 00011124444443321 22 34556788899999 7888876
Q ss_pred ccccC------CC----C-CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc
Q 006087 160 DWLDG------RP----K-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS 228 (662)
Q Consensus 160 ~~~~~------~~----~-~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~ 228 (662)
+.... .+ . ....+...-+.|-..+..+|...|+ +++|. .+..|-. +-...--| +|-+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~--lvlgT--~N~sE~~-~Gy~TkyG-D~~~------ 177 (268)
T PRK00768 110 KPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGG--LVVGT--DHAAEAV-TGFFTKFG-DGGA------ 177 (268)
T ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCC--EEEcC--CcccHHH-hCceeccC-Cccc------
Confidence 53110 01 0 0012333345677888888888775 44444 2233421 11111001 1111
Q ss_pred ccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCC
Q 006087 229 QIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRS 266 (662)
Q Consensus 229 ~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d 266 (662)
-+.|+.. +.|.+|+++++..|+| .++-|...+
T Consensus 178 -d~~pi~~-----L~KteV~~La~~l~vP~~ii~k~Psa~ 211 (268)
T PRK00768 178 -DILPLFG-----LNKRQGRALLAALGAPEHLYEKVPTAD 211 (268)
T ss_pred -cchhhcC-----CcHHHHHHHHHHhCCCHHHhcCCCCCC
Confidence 2345443 4578999999999998 555555554
No 84
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=97.60 E-value=0.00082 Score=75.42 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=88.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CCcH----HHHHHHHHHHHHcCCeEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK----EEANIVSHRVSDMGIRCEI 156 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~eS~----~Ea~~V~~~c~kLGIp~~i 156 (662)
+..++||+|||+||+|+|.|+.+.... .+. .+....+.+++.|.|.- |+-. ...+.+++.|+++|+|+.+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~-lp~----e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~ 87 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAA-LPA----EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEP 87 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHh-ccc----cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 466899999999999999988654321 110 01112577888899973 2211 1223456778888988776
Q ss_pred EEcccc-----------cCCCC-CCCHHHHHHHHHH----HHHHHHHHHcCCcccccccccChhhHHHH-HHhhccCCC-
Q 006087 157 VRCDWL-----------DGRPK-QGHLQEAARDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELFI-LRLSRNSGV- 218 (662)
Q Consensus 157 ~~~~~~-----------~~~~~-~~niE~~AR~~RY----~~L~e~A~e~G~d~LatGHhaDDqaET~L-mrL~RGsGi- 218 (662)
..+.-. .+.|. .....-.+..++- +++.++.+++|-..+++|--.+.-+.--- |.--.++..
T Consensus 88 ~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~k~e~~~~r 167 (447)
T TIGR03183 88 HRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVMEKHESGSLR 167 (447)
T ss_pred EecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhhhhcccccc
Confidence 443211 01110 1111111222332 34555566677788888877664322110 111111111
Q ss_pred cCccccccc--cccccccccccccccCHHHHHHHHHhCCCCee
Q 006087 219 LGLAGMAFS--SQIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 219 ~GLaGM~~~--~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
.+++--... .-.+.|.. +.+..+|-.|...++.||-
T Consensus 168 ~~l~~~~~~~~~~v~~PI~-----dWs~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 168 DRLSRNSSLPNSWVYSPIE-----DWSNDDVWMYLLQVPNPWG 205 (447)
T ss_pred ccccccCCCCCcEEEEChH-----hCCHHHHHHHHHhcCCCCC
Confidence 111110000 01244544 4567899999999999883
No 85
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00019 Score=69.98 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=67.4
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
++-|-+|||+||+..+.+|..+ |+ ++..|+||+|+-++ .+.+++.|+.+|.||.++.++-.-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl---gy-----------ev~LVTvnFGv~d~----~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL---GY-----------EVELVTVNFGVLDS----WKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh---CC-----------CcEEEEEEeccccc----hhhHHHHHHHhCCCcceeccCHHH
Confidence 4778999999999988887642 32 67889999998643 357788899999999999876321
Q ss_pred -----------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 164 -----------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 164 -----------~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
+.|. +.+|-. --.+++-+|.. -++.|+-|...||.+-+
T Consensus 64 le~A~em~iedg~P~-~aIq~i----H~~alE~~A~r-~~~~iaDGTRRDDrvP~ 112 (198)
T COG2117 64 LEDAVEMIIEDGYPR-NAIQYI----HEMALEALASR-EVDRIADGTRRDDRVPK 112 (198)
T ss_pred HHHHHHHHHhcCCCc-hHHHHH----HHHHHHHHHHH-HHHHHcCCCcccccCcc
Confidence 1111 112221 11335555554 56778888888886543
No 86
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.57 E-value=0.00083 Score=70.80 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-CCCcHHHHHHHHHH
Q 006087 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEANIVSHR 146 (662)
Q Consensus 68 ~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-R~eS~~Ea~~V~~~ 146 (662)
..++..+...+. ++++||+|||.||++.+.|+.+....+. ...++.++...++- - ..+.+.++..
T Consensus 14 ~fl~~~l~~~~~---k~~VlGiSGGiDSa~~~~La~~A~~~~~--------~~~~~~av~mP~~~~~---~~~~~da~~~ 79 (268)
T COG0171 14 DFLRDYLKKAGF---KGVVLGLSGGIDSALVLALAVRALGKGD--------SKENVLAVRLPYGYTV---QADEEDAQDL 79 (268)
T ss_pred HHHHHHHHHcCC---CCeEEEcccChHHHHHHHHHHHHhcccc--------chhheeeEECCCCCcc---ccCHHHHHHH
Confidence 334444444333 5799999999999999998876543210 01247788888773 2 2344556788
Q ss_pred HHHcCCeEEEEEcccccC-------CCCCC------CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh
Q 006087 147 VSDMGIRCEIVRCDWLDG-------RPKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (662)
Q Consensus 147 c~kLGIp~~i~~~~~~~~-------~~~~~------niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~ 213 (662)
|+.+|+....+.+..... ....+ ..+..--+.|...+..+|.++|.=+|=||| ..|..+=-..
T Consensus 80 ~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn----~sE~~~Gy~T 155 (268)
T COG0171 80 AEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN----KSELALGYFT 155 (268)
T ss_pred HHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc----HHHHhcCcee
Confidence 899999977766542110 00001 123333456788888999887765554444 4554311111
Q ss_pred ccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC
Q 006087 214 RNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257 (662)
Q Consensus 214 RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~ 257 (662)
.. | +|-++ +.|+.. +.|.+|..+++..|+|
T Consensus 156 ky-G-Dg~~d-------~~Pi~~-----L~KtqV~~La~~l~ip 185 (268)
T COG0171 156 KY-G-DGAVD-------INPIAD-----LYKTQVYALARHLGIP 185 (268)
T ss_pred cc-c-CcccC-------hhhhcC-----CcHHHHHHHHHHcCCC
Confidence 11 0 12222 234443 4578888899988877
No 87
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.47 E-value=0.00025 Score=81.96 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
.+.+++.+.+.+..... .+.+|.|.+|||.||++++.++.+....... ...+...+..++ .|+.+ ..|..+
T Consensus 207 ~~~lr~~L~~aV~~rl~-sdvpvgv~LSGGLDSSlIaala~~~~~~~~~----~~~~~~~l~tfs--ig~~~--~~D~~~ 277 (578)
T PLN02549 207 PLVLREAFEKAVIKRLM-TDVPFGVLLSGGLDSSLVASIAARHLAETKA----ARQWGQQLHSFC--VGLEG--SPDLKA 277 (578)
T ss_pred HHHHHHHHHHHHHHHhc-cCCceeEeecCCccHHHHHHHHHHhhhhccc----ccccCCCceEEe--cCCCC--CCHHHH
Confidence 46677777777776543 3567999999999999999988764322100 000001344444 45532 347778
Q ss_pred HHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHH------------HHHHHHHHHHHHHcCCcccccccccChh
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR------------DMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR------------~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
+++.|+.+|.+|+.+.++..... .++++..+ ..=.-++.+.+++.|+++|++|..+|+.
T Consensus 278 Ar~vA~~lg~~h~ev~~~~~e~~---~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDEl 348 (578)
T PLN02549 278 AREVADYLGTVHHEFHFTVQEGI---DAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEI 348 (578)
T ss_pred HHHHHHHhCCCCeEEEEChHHHH---HHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhh
Confidence 99999999999998876532210 01111111 0112346677888999999999999986
No 88
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.45 E-value=0.0012 Score=67.92 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=66.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCc----HHHHHHHHHHHHHcCCeEEEEEc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS----~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
|+++.+|||+||+..++.+.+ + + ++.++..-..-..++ ....+.++..|+.+|||++....
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~---~-~-----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~ 66 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALE---E-H-----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYT 66 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHH---c-C-----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEc
Confidence 689999999999999987653 1 1 233333222211111 12346688999999999977654
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCC
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi 218 (662)
.+. .+ ...+-|.+..++.|++.|++|.-..+.--+..-+.+...|+
T Consensus 67 ~~~--------~e-----~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl 112 (222)
T TIGR00289 67 SGE--------EE-----KEVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRELGL 112 (222)
T ss_pred CCc--------hh-----HHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCC
Confidence 321 11 12233444556679999999987765445555566665543
No 89
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00059 Score=72.39 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=92.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEcc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~ 160 (662)
.+++++|.|||.|..+.+.+|++ +|+ +++|..-|-|. .+|-+.+++-|.+.|-. +.+.++.
T Consensus 5 ~~~vVLAySGgLDTscil~WLke---qGy-----------eViay~AnvGQ----~edfe~ar~kAlk~Gakk~~~ed~~ 66 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKE---QGY-----------EVIAYLANVGQ----KEDFEEARKKALKSGAKKVVVEDVR 66 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHh---cCc-----------eEEEeeccccc----hhhHHHHHHhhhhcCceEEEehhhh
Confidence 46899999999999999888764 443 78888889886 34555577888888865 4444444
Q ss_pred cccC----CCC-CC-C-HH-------HHHHHHHHHHHHHHHHHcCCccccccccc--ChhhH--HHHHHhhccCCCcCcc
Q 006087 161 WLDG----RPK-QG-H-LQ-------EAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAE--LFILRLSRNSGVLGLA 222 (662)
Q Consensus 161 ~~~~----~~~-~~-n-iE-------~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaE--T~LmrL~RGsGi~GLa 222 (662)
.++. +|. +. . .| ..||..--...-++|.+.|+.++.-|-+. |||+- --+.
T Consensus 67 ~eFvedfi~Pa~qs~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~y------------ 134 (412)
T KOG1706|consen 67 EEFVEDFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFY------------ 134 (412)
T ss_pred HHHHhhcchhhhhhcchhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeeeeeee------------
Confidence 3321 111 00 0 11 13455555566788999999888766654 68763 1111
Q ss_pred ccccccccccccccc--cccccCHHHHHHHHHhCCCCeeeCCCCC
Q 006087 223 GMAFSSQIFSSYAYS--CHDDLKNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 223 GM~~~~~i~rPlL~~--~r~~i~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
.+.|..+.+.|.-.+ .-..--++++.+||+++|||.-..|-|.
T Consensus 135 sl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~p 179 (412)
T KOG1706|consen 135 SLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNP 179 (412)
T ss_pred ccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCCC
Confidence 122222222222111 0001135788899999999976655554
No 90
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.19 E-value=0.0018 Score=75.50 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHH
Q 006087 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (662)
Q Consensus 66 ~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~ 145 (662)
+.+.|.+.+... +..+.+|.+.+|||.||.+++.++.+.... .+.++++.+.- ...+|..++++
T Consensus 243 l~~~l~~aV~~r-l~~d~~vg~~LSGGlDSs~Iaa~~~~~~~~-------------~i~t~s~~~~~--~~~dE~~~A~~ 306 (628)
T TIGR03108 243 LIERLREAVRSR-MVADVPLGAFLSGGVDSSAVVALMAGLSDT-------------PVNTCSIAFDD--PAFDESAYARQ 306 (628)
T ss_pred HHHHHHHHHHHH-HhcCCcceEeecCCccHHHHHHHHHHhcCC-------------CCcEEEEecCC--CCCChHHHHHH
Confidence 444444444443 344678999999999999998877542111 34556665532 12367788999
Q ss_pred HHHHcCCeEEEEEcccccC-----------CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 146 RVSDMGIRCEIVRCDWLDG-----------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 146 ~c~kLGIp~~i~~~~~~~~-----------~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
.|+.+|++|+++.++.... .|. .+ ..-...| ++.+.+++ |++++++|+-+|-.
T Consensus 307 vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~P~-~~---~~~~~~~-~~~~~a~~-~~kV~LsG~GgDEl 370 (628)
T TIGR03108 307 VAERYGTNHRVETVDPDDFSLVDRLAGLYDEPF-AD---SSALPTY-RVCELARK-RVTVALSGDGGDEL 370 (628)
T ss_pred HHHHhCCCCeEEecCHHHHHHHHHHHHHhCCCC-CC---chHHHHH-HHHHHHHC-CCCEEEeccchhhc
Confidence 9999999999887653221 010 00 0111223 23444544 68999999988853
No 91
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.17 E-value=0.0012 Score=76.46 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
.+.+++.+.+.+.... ..+.+|.+.+|||.||.+++.++.+....+.. ....-+...+.+++|. +. ++ .|..+
T Consensus 219 ~~~lr~~L~~AV~~rl-~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~--~~~~~~~~~l~tfsig--~~-~~-~D~~~ 291 (586)
T PTZ00077 219 LEEIREALEAAVRKRL-MGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEI--DLSKRGMPKLHSFCIG--LE-GS-PDLKA 291 (586)
T ss_pred HHHHHHHHHHHHHHHh-cCCCceEEEecCCchHHHHHHHHHHhhccccc--ccccccCCCceEEEcC--CC-CC-chHHH
Confidence 3556666666666543 34578999999999999999988764321100 0000000135555554 32 23 57788
Q ss_pred HHHHHHHcCCeEEEEEcccccC------------CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDG------------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~------------~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
+++.|+.+|.+|+.+.++.... .+....+ .+-..-| ++.+.+++.|+++|++|.-+|..
T Consensus 292 Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~--~~~~p~y-ll~r~a~~~gvkVvLsGeGaDEl 362 (586)
T PTZ00077 292 ARKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTI--RASTPMY-LLSRRIKALGIKMVLSGEGSDEL 362 (586)
T ss_pred HHHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCc--chHHHHH-HHHHHHHhcCCeEEEecCchhhh
Confidence 9999999999998887643211 0000001 1112222 56677888899999999888865
No 92
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.04 E-value=0.0019 Score=74.46 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
.+.+++.+.+.+.... ..+.+|.+.+|||.||++++.++++..............|...+..++|... ++ .|..+
T Consensus 209 ~~~lr~~L~~aV~~rl-~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~---~~-~D~~~ 283 (554)
T PRK09431 209 KNELRDALEAAVKKRL-MSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE---GS-PDLKA 283 (554)
T ss_pred HHHHHHHHHHHHHHHh-cCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC---CC-ChHHH
Confidence 3456666666666543 3457899999999999999998876432110000000001013555565442 22 37788
Q ss_pred HHHHHHHcCCeEEEEEcccccCCCCCCCHHH-------------HHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-------------AARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~-------------~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
+++.|+.+|.+|+.+.++...... .+++ .+-.. .-++.+.++..|++++++|.-+|-
T Consensus 284 A~~vA~~lg~~h~~v~~t~~e~~~---~l~~vi~~le~~dp~~~~~~~p-~yll~~~~~~~gvkvvLsGeGaDE 353 (554)
T PRK09431 284 AREVADHLGTVHHEIHFTVQEGLD---ALRDVIYHLETYDVTTIRASTP-MYLMARKIKAMGIKMVLSGEGADE 353 (554)
T ss_pred HHHHHHHhCCccEEEEeCHHHHHH---HHHHHHHHHhccCCccchhHHH-HHHHHHHHHHcCCEEEEecCchhh
Confidence 999999999999988764321100 0000 11111 123455555677888888877774
No 93
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.03 E-value=0.0017 Score=75.37 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC-cHHHHHHHH
Q 006087 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-SKEEANIVS 144 (662)
Q Consensus 66 ~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e-S~~Ea~~V~ 144 (662)
+.+.+.+.+.... ..+.+|.+.+|||.||.+++.++.+.... .+.+++|.+.--++ ..+|..+++
T Consensus 245 l~~~L~~AV~~rl-~sd~pvg~~LSGGlDSs~Iaa~~~~~~~~-------------~l~tftigf~~~~~~~~dE~~~A~ 310 (589)
T TIGR03104 245 ILEALRLAVKRRL-VADVPVGVLLSGGLDSSLIVGLLAEAGVD-------------GLRTFSIGFEDVGGEKGDEFEYSD 310 (589)
T ss_pred HHHHHHHHHHHHh-hcCCceeEEecCCccHHHHHHHHHHhcCC-------------CceEEEEEecCCCCCCCChHHHHH
Confidence 4444555554433 44678999999999999998887642110 34566665531111 235788999
Q ss_pred HHHHHcCCeEEEEEcccccC------------CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 145 HRVSDMGIRCEIVRCDWLDG------------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 145 ~~c~kLGIp~~i~~~~~~~~------------~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
+.|+.+|.+|+.+.++.... .|. .+.... ..| ++.+.+++ +++++++|+-+|-.
T Consensus 311 ~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~-~~~~~~---~~~-~l~~~a~~-~~kV~LsGeGaDEl 376 (589)
T TIGR03104 311 IIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPM-VSHDCV---AFY-LLSEEVSK-HVKVVQSGQGADEV 376 (589)
T ss_pred HHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCC-CCchHH---HHH-HHHHHHhC-CCeEEeecCchHhc
Confidence 99999999998887643211 111 111111 112 35566655 69999999988854
No 94
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=96.62 E-value=0.018 Score=57.53 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=83.5
Q ss_pred ChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc--------
Q 006087 92 GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD-------- 163 (662)
Q Consensus 92 G~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~-------- 163 (662)
|.||+||++|+.+... ++.+++||.|+ +-++-.+++.++++++|+++++...+...
T Consensus 2 ~~~s~Vll~L~~~~~~--------------~~~vifvDTg~--~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~ 65 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRP--------------DVKVFFLDTGR--LFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEY 65 (191)
T ss_pred ChHHHHHHHHHHhcCC--------------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHc
Confidence 7899999999975321 35688999998 45666778999999999998887543210
Q ss_pred CCCC-CCC-HHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccccc
Q 006087 164 GRPK-QGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (662)
Q Consensus 164 ~~~~-~~n-iE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~ 241 (662)
+.+. ..+ ....|...+-.-|.++.++ .+.+++|--.++-..--.+......... |+ --+.|++ .
T Consensus 66 G~~~~~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~~~~~~~~~~---~~----~~~~Pi~-----~ 131 (191)
T TIGR02055 66 GLNLFYRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRAQAPFLEIDEAF---GL----VKINPLA-----D 131 (191)
T ss_pred CcccccccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhcCCceeeecCCC---Ce----EEEEecc-----c
Confidence 1110 011 3344566666667776654 5667788766654322111111111000 10 0134554 4
Q ss_pred cCHHHHHHHHHhCCCCe
Q 006087 242 LKNHSILLICQGGNRDW 258 (662)
Q Consensus 242 i~k~eI~~ya~~~gI~w 258 (662)
.+..+|..|..++|||+
T Consensus 132 Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 132 WTSEDVWEYIADNELPY 148 (191)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 56889999999999998
No 95
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=96.61 E-value=0.011 Score=68.01 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
.+.+.+.+...+...+ .....+.+.+|||+||++++.++++..... ...-++|.+.- ....|..+
T Consensus 212 ~~~l~~~l~~sV~~r~-~advpvg~~lSGGlDSS~Iaa~a~~~~~~~------------~~~~fsvg~~~--~~~~D~~~ 276 (542)
T COG0367 212 AEHLRSLLEDAVKRRL-VADVPVGVFLSGGLDSSLIAAIAAEELGKE------------GKTTFTVGFED--SDSPDAKY 276 (542)
T ss_pred HHHHHHHHHHHHHHHh-ccCCcEEEEeCCCccHHHHHHHHHHhcccc------------ceeeeEeecCC--CCCchHHH
Confidence 4555666666666544 335789999999999999999987643221 01114555542 21358889
Q ss_pred HHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHH--------------HHHHHHHHHHcCCcccccccccCh
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR--------------YRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~R--------------Y~~L~e~A~e~G~d~LatGHhaDD 203 (662)
+++.|+.+|.+|+...+.... +.++..+.- .-++.+.++++|+.++++|.-+|-
T Consensus 277 a~~~A~~lg~~h~~~~~~~~e-------~~~~~~~vv~~~~~p~~~~~~~ply~~~~~a~~~g~kVvLSGeGADE 344 (542)
T COG0367 277 ARAVAKFLGTPHHEIILTNEE-------LLNALPEVVKALDTPGGMAASIPLYLLSRKARAEGEKVVLSGEGADE 344 (542)
T ss_pred HHHHHHHhCCCcEEEeecHHH-------HHHHHHHHHhhcCCCCcccchhHHHHHHHhhhhcCcEEeecCccHHH
Confidence 999999999999887765322 111111111 234667778888888888888875
No 96
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.60 E-value=0.044 Score=56.51 Aligned_cols=139 Identities=11% Similarity=0.078 Sum_probs=76.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEE-EE-EeCCC-CC-CcHHHHHHHHHHHHHcCCeEEEEEc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA-IT-VDHGL-RE-ESKEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~A-vh-VDHGL-R~-eS~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
|+++-+|||+||+..++.+.+- + ++.+ ++ +..+- |- .-.--.+.++..|+.+|||++....
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~-----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----H-----------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----C-----------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 5788999999999998876531 1 2222 22 33321 10 0001235678899999999865432
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccccccccccc
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r 239 (662)
+ +.-++ -.+-|.+..++.|++.|++|.-..+.--+..-+++...|+. .+.|+....
T Consensus 67 ~--------~~~e~-----~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~----------~~~PLW~~~- 122 (223)
T TIGR00290 67 E--------GTEED-----EVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLK----------SFAPLWHRD- 122 (223)
T ss_pred C--------CCccH-----HHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCE----------EeccccCCC-
Confidence 1 11111 11234455555699999999876544444455666555432 234555432
Q ss_pred cccCHHHHHHHHHhCCCCeeeCCCCC
Q 006087 240 DDLKNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 240 ~~i~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
..++..-.-+.|+..+--..|.
T Consensus 123 ----~~~ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 123 ----PEKLMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred ----HHHHHHHHHHcCCeEEEEEEec
Confidence 2334433446677766544443
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.25 E-value=0.058 Score=61.15 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=88.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++++++.|||.|| +|++++.+. +. .+-++++|.|.- -++--+++.++.+++|+++++..-+.
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~---~~-----------~ipV~flDTG~l--FpETy~~~d~v~~~ygl~l~~~~p~~ 177 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLT---GR-----------PFRVFSLDTGRL--NPETYRFFDAVEKQYGIRIEYMFPDA 177 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHh---CC-----------CCcEEEecCCCC--CHHHHHHHHHHHHHhCCceEEECCCc
Confidence 35799999988776 577877643 11 345889999963 45556788888999999988763321
Q ss_pred cc--------CCCC--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH-HHHHhhc-cCCCcCccc-ccccc
Q 006087 162 LD--------GRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL-FILRLSR-NSGVLGLAG-MAFSS 228 (662)
Q Consensus 162 ~~--------~~~~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET-~LmrL~R-GsGi~GLaG-M~~~~ 228 (662)
.. +... ..+....|+..+-+-|.+..+. ++..+||--.+.-.-| --+.... .....+..| -....
T Consensus 178 ~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~~~i 255 (463)
T TIGR00424 178 VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLV 255 (463)
T ss_pred chHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCccccccCCcccccccccccccCCCceE
Confidence 00 0000 1134566777777778887764 5678888655532201 1111110 000000000 00000
Q ss_pred ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 229 QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 229 ~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
-+.|++ ..+..+|..|..++++||
T Consensus 256 -KvnPLa-----~Wt~~dVw~Yi~~~~LP~ 279 (463)
T TIGR00424 256 -KWNPVA-----NVEGKDVWNFLRTMDVPV 279 (463)
T ss_pred -EEeecc-----cCCHHHHHHHHHHcCCCC
Confidence 134554 456789999999999997
No 98
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.88 E-value=0.017 Score=62.41 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q 006087 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149 (662)
Q Consensus 80 ~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~k 149 (662)
..-++|.|+||||+||.++|+|+.++.++... .++.+.|+|+--. =..-..+|++.-..
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~---------~~i~VlfiD~E~Q--Ys~TidyV~em~~~ 83 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR---------DKISVLFIDWEAQ--YSCTIDYVQEMRES 83 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC---------CceEEEEEcchhh--hhhHHHHHHHHHhc
Confidence 34578999999999999999999988765321 1478889997421 11234567776664
No 99
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=95.80 E-value=0.027 Score=51.27 Aligned_cols=58 Identities=24% Similarity=0.148 Sum_probs=49.0
Q ss_pred ccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc--CCCHHHHHHHH
Q 006087 231 FSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCSFKSELQAV 293 (662)
Q Consensus 231 ~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~--~~~f~~~L~~~ 293 (662)
++|++.+ ++.||..||..+||+++.+++.++....|..+|..|..+. .|++..++...
T Consensus 4 IRPL~~v-----~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s 63 (104)
T TIGR00269 4 IKPLRYI-----PEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRG 63 (104)
T ss_pred ccccccC-----CHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHH
Confidence 5777754 5789999999999999999999999999999999998887 67777765443
No 100
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=95.52 E-value=0.068 Score=54.91 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=53.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHH--HHHHHHHHHHHcCCeEEEEEccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE--EANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~--Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
|+++-+|||+||+..++.+.+ + +. ....+-+++++.+.-... -.+.++..|+.+|||+.....+-
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~---~-~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g 68 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALR---Q-HE---------VVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSG 68 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHH---T--E---------EEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE--
T ss_pred cEEEEEcCcHHHHHHHHHHHH---h-CC---------ccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccC
Confidence 688899999999999887643 1 10 122222355543311000 13467888899999998876541
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc-ChhhHHHHHHhhccCC
Q 006087 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA-DDQAELFILRLSRNSG 217 (662)
Q Consensus 162 ~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha-DDqaET~LmrL~RGsG 217 (662)
. ..... +-|.+..++.+++.+++|--. +||- +..-+++...|
T Consensus 69 ~-----~~~~~--------~~l~~~l~~~~v~~vv~GdI~~~~~r-~~~e~vc~~lG 111 (218)
T PF01902_consen 69 D-----EEDYV--------EDLKEALKELKVEAVVFGDIDSEYQR-NWVERVCERLG 111 (218)
T ss_dssp ------CCCHH--------HHHHHHHCTC--SEEE--TTS-HHHH-HHHHHHHHHCT
T ss_pred c-----cchhh--------HHHHHHHHHcCCCEEEECcCCcHHHH-HHHHHHHHHcC
Confidence 1 11111 223444566779999999865 4443 33345555544
No 101
>PLN02309 5'-adenylylsulfate reductase
Probab=95.44 E-value=0.18 Score=57.11 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=87.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++++++.|||.|| +|++++.+. +. ++-++++|.|.- -++--+++.++.+++|+++++..-+.
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~---~~-----------~ipV~flDTG~l--fpETy~~~d~v~~~ygl~i~~~~P~~ 172 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLT---GR-----------PFRVFSLDTGRL--NPETYRLFDAVEKHYGIRIEYMFPDA 172 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHh---CC-----------CCcEEEecCCCC--CHHHHHHHHHHHHHhCCceEEECCCc
Confidence 36799999977666 566776542 11 344789999973 35556788899999999988763221
Q ss_pred cc--------CCCC--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH-HHHHhh-ccCCCcCcc-cccccc
Q 006087 162 LD--------GRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL-FILRLS-RNSGVLGLA-GMAFSS 228 (662)
Q Consensus 162 ~~--------~~~~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET-~LmrL~-RGsGi~GLa-GM~~~~ 228 (662)
.. +... ..+....|+..+-+=|.+..+. .+..+||--.|+-.-| -=+.+. ...+..|.. |.....
T Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~l 250 (457)
T PLN02309 173 VEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLV 250 (457)
T ss_pred chHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCccccccCCeeeecccccccccCCCCee
Confidence 10 0000 1134556677777778877764 4678888655542211 001111 111111100 000000
Q ss_pred ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 229 QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 229 ~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
-+.|++ ..+..+|..|.+++++||
T Consensus 251 -KvnPl~-----~Wt~~dVw~Yi~~~~lP~ 274 (457)
T PLN02309 251 -KWNPLA-----NVTGNEVWNFLRTMDVPV 274 (457)
T ss_pred -EEcccc-----cCCHHHHHHHHHHcCCCC
Confidence 134555 456789999999999997
No 102
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.06 E-value=0.3 Score=43.90 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=67.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC----CcHHHHHHHHHHHHHcCCeEEEEEc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE----ESKEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~----eS~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
+|+||++|+..|..++..+..+.... ...+.++||..+... +..+..+.+.+.+++.+++..+..
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~----------~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL----------KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLP- 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh----------CCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe-
Confidence 58999999999999888776654431 126888998765331 222334456677888888754331
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccC
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGs 216 (662)
.+++ .+.+.+.+++++++.|++|+|..- .+-++..|+
T Consensus 70 --------~~~~--------~~~I~~~~~~~~~dllviG~~~~~----~~~~~~~Gs 106 (124)
T cd01987 70 --------GDDV--------AEAIVEFAREHNVTQIVVGKSRRS----RWRELFRGS 106 (124)
T ss_pred --------CCcH--------HHHHHHHHHHcCCCEEEeCCCCCc----hHHHHhccc
Confidence 1122 245778899999999999999763 344455555
No 103
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=94.89 E-value=0.17 Score=60.34 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=47.1
Q ss_pred CCeEEEEEcCChhHHHHHHHH-------HhhHhCCCCCC----------------CCCCCCcCcEEEEEEeCCCCCCcHH
Q 006087 82 HHRIALGVSGGPDSMALCVLT-------AGWKTGGFNQN----------------GEAGEFIDGLLAITVDHGLREESKE 138 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL-------~~~~~~g~~~~----------------~~~~g~~~~L~AvhVDHGLR~eS~~ 138 (662)
.++++|++|||.||.+.+.+. .+....|...+ ....++... ...+|--+-+..|++
T Consensus 348 ~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~mp~~~ss~~ 426 (700)
T PLN02339 348 ASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKR-IFYTVYMGSENSSEE 426 (700)
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcc-eeEEEECCCCCCCHH
Confidence 468999999999999866553 22121111000 000000001 123344444556777
Q ss_pred HHHHHHHHHHHcCCeEEEEEcc
Q 006087 139 EANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 139 Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
....++++|+.+|+.|+.++++
T Consensus 427 t~~~A~~la~~lG~~~~~i~I~ 448 (700)
T PLN02339 427 TRSRAKQLADEIGSSHLDVKID 448 (700)
T ss_pred HHHHHHHHHHHHCCCEEEEeCH
Confidence 7788999999999999999887
No 104
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.96 E-value=0.95 Score=46.78 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=61.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH----HHHHHHHHHHHHcCCeEEEEEc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK----EEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~----~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
++++-+|||+||...+|.+. +.|. ++..+..=+--+++|- .-...+...|+.+|||+.....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~---~~G~-----------eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLAL---EEGH-----------EVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHH---HcCC-----------eeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEec
Confidence 57888999999988888664 3332 3333222121122221 1234677888999999876654
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCC
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi 218 (662)
+... ...++ -+.+..+..+++.|+.|--+.+-=-|-+-|+++-.|+
T Consensus 68 ~g~~----e~eve---------~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl 113 (223)
T COG2102 68 SGEE----EREVE---------ELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGL 113 (223)
T ss_pred Cccc----hhhHH---------HHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCC
Confidence 3311 01122 2444445566889998876653333334566665543
No 105
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.74 E-value=0.93 Score=50.86 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=82.6
Q ss_pred cccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHh-hHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH
Q 006087 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAG-WKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (662)
Q Consensus 59 ~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~-~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~ 137 (662)
.|++...++..|.+.+.+.... +.++.|-+|||.||...+.++.+ +++... ..|- .++.+. -|+- +|+
T Consensus 203 ~p~d~~~~r~~~~~aV~KRLM~-d~p~GvLLSGGLDSSLvAsia~R~lk~~~~-----~~~~--~lhsFa--IGle-~SP 271 (543)
T KOG0571|consen 203 TPLDYLALRHTLEKAVRKRLMT-DVPFGVLLSGGLDSSLVASIAARELKKAQA-----ARGS--KLHSFA--IGLE-DSP 271 (543)
T ss_pred CcccHHHHHHHHHHHHHHHhhc-cCceeEEeeCCchHHHHHHHHHHHHHHhhh-----hcCC--CceEEE--ecCC-CCh
Confidence 4788888888898888765433 46799999999999988876543 332110 1121 344433 4663 443
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcccccCCCC----CCCHHH------HHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPK----QGHLQE------AARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 138 ~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~----~~niE~------~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
|...+++.|+-+|.+|+...+....+-.. .-.+|. .|..-. -+|.+..+++|...|+-|--+|..
T Consensus 272 -DL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpm-yLlsr~Ikk~gvkmvlSGEGsDEi 346 (543)
T KOG0571|consen 272 -DLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPM-YLLSRKIKKLGVKMVLSGEGSDEI 346 (543)
T ss_pred -hHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCch-HHHHHHHHhcceEEEEecCCchhh
Confidence 56678999999999999887754321000 000110 112222 356777888888888888776654
No 106
>PRK10490 sensor protein KdpD; Provisional
Probab=92.65 E-value=0.81 Score=55.99 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-CCCcHH---HHHHHHHHHHHcCCeEE
Q 006087 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKE---EANIVSHRVSDMGIRCE 155 (662)
Q Consensus 80 ~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-R~eS~~---Ea~~V~~~c~kLGIp~~ 155 (662)
.-+++|+|++||++.|-.|..-..++.... ..+++|+||+..- ...+.+ ......++|+++|.+.+
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~----------~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~ 317 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARL----------GSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETA 317 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhc----------CCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 446889999999999988877665554331 1268999998652 222222 22233469999999966
Q ss_pred EEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 156 i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
++.- +++- +.+.++|+++|++.|++|+...-
T Consensus 318 ~~~~---------~dva--------~~i~~~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 318 TLSD---------PAEE--------KAVLRYAREHNLGKIIIGRRASR 348 (895)
T ss_pred EEeC---------CCHH--------HHHHHHHHHhCCCEEEECCCCCC
Confidence 5531 1222 34778999999999999998654
No 107
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=91.73 E-value=2.3 Score=38.09 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=60.1
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC-----------cHHHHHHHHHHHHHcCC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-----------SKEEANIVSHRVSDMGI 152 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e-----------S~~Ea~~V~~~c~kLGI 152 (662)
+|+|++.|..+|..++.....+.... ..+++++||-...... ..+..+.+.+.+.+.|+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~----------~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ----------NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC----------CCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 58999999999998887766554321 1268888874332211 12233445566677888
Q ss_pred eEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 153 p~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
+.+..... .+++- +.+.+++++++++.|++|++...
T Consensus 71 ~~~~~~~~-------~~~~~--------~~I~~~a~~~~~dlIV~G~~~~~ 106 (132)
T cd01988 71 PVHTIIRI-------DHDIA--------SGILRTAKERQADLIIMGWHGST 106 (132)
T ss_pred ceEEEEEe-------cCCHH--------HHHHHHHHhcCCCEEEEecCCCC
Confidence 76544311 11111 33667888999999999999654
No 108
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=91.57 E-value=3.2 Score=36.17 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=59.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC--------cHHHHHHHHHH---HHHcCC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--------SKEEANIVSHR---VSDMGI 152 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e--------S~~Ea~~V~~~---c~kLGI 152 (662)
+|+|+++|+..+-.++..+..+.... ..++.++||....-.. ..+..+...++ +...|+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~----------~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL----------GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999888776654431 1278899987543211 11222223333 334677
Q ss_pred eEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 153 p~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
+.+..... ++. ...+.+.+++.+++.|++|.+....
T Consensus 71 ~~~~~~~~--------~~~--------~~~i~~~~~~~~~dlvvig~~~~~~ 106 (130)
T cd00293 71 KVETVVLE--------GDP--------AEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred ceEEEEec--------CCC--------HHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 76544321 111 2457788899999999999977653
No 109
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.53 E-value=2.8 Score=50.50 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CCcHHH---HHHHHHHHHHcCCeEEE
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE---ANIVSHRVSDMGIRCEI 156 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~eS~~E---a~~V~~~c~kLGIp~~i 156 (662)
.+++|+|++||++.|-.|..-..++... +...++|+||+.+=. ..+.++ .....++|+.+|-++.+
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~----------~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~ 316 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASR----------LHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVT 316 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHH----------hCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEE
Confidence 3489999999999999998766655433 112689999986633 233333 34467899999998877
Q ss_pred EEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh-----HHHHHHhhccC
Q 006087 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-----ELFILRLSRNS 216 (662)
Q Consensus 157 ~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa-----ET~LmrL~RGs 216 (662)
+.- +++. +.+.++|+.+++..|++|.+..-.- +.+.-+|.|..
T Consensus 317 l~~---------~dv~--------~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~ 364 (890)
T COG2205 317 LYG---------GDVA--------KAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREA 364 (890)
T ss_pred EeC---------CcHH--------HHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcC
Confidence 642 1222 2367889999999999998775332 44555665543
No 110
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=87.10 E-value=5.5 Score=36.78 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=55.1
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC--CC-c-------------HHH----HHHH
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--EE-S-------------KEE----ANIV 143 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR--~e-S-------------~~E----a~~V 143 (662)
+|+||+.|...|..++..+..+... ....++++||-.... .. . .++ .+.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~----------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT----------KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPY 70 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC----------CCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998877654322 112688888743210 00 0 001 1112
Q ss_pred HHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
.+.|+..|++....... .+++ .+.+.++|++.+++.|++|.|..
T Consensus 71 ~~~~~~~~~~~~~~~~~-------g~~~--------~~~I~~~a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 71 RCFCSRKGVQCEDVVLE-------DDDV--------AKAIVEYVADHGITKLVMGASSD 114 (146)
T ss_pred HHHHhhcCCeEEEEEEe-------CCcH--------HHHHHHHHHHcCCCEEEEeccCC
Confidence 23444567766544321 1122 23366778999999999998865
No 111
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=86.67 E-value=10 Score=40.40 Aligned_cols=146 Identities=17% Similarity=0.187 Sum_probs=90.6
Q ss_pred hhhhhhhhccccccCCCceeecccchh--hhhh--hccCCCCccccccchHHHHHHHHHHHHHcC-------CCCCCeEE
Q 006087 18 LSTLVARLSLSSVKCRIPFTRSQYLPS--IRLF--CKCSHAHAVEYLTDMTKYREAFSRRMAMAG-------LKPHHRIA 86 (662)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~~--c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~-------i~~~~kVL 86 (662)
+++-|+.++ ...--+-.-.+||... .++| |+.... ..+.+.+.+.+.|...-...+ -...+||+
T Consensus 20 iVaais~~l--~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~---~~~~~~~~l~~~f~~~a~~f~m~~~~~~~~~~~ri~ 94 (287)
T COG0788 20 IVAAISGFL--AEHGCNIVDSDQFDDPETGRFFMRVEFEGE---GGPLDREALRAAFAPLAEEFGMDWRLHDAAQRKRIA 94 (287)
T ss_pred cHHHHHHHH--HHcCCceeecccccccccCeEEEEEEEecC---CCcccHHHHHHHHHHHHHhhCceeEEeccccCceEE
Confidence 445555555 4444455566666221 2333 333331 123667888888877444322 13457899
Q ss_pred EEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCC
Q 006087 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP 166 (662)
Q Consensus 87 VAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~ 166 (662)
+-|| +-+-+|..||.+|..- .++.++.+|.=||- ..+.+++.+|||++.+.++-.
T Consensus 95 i~VS--K~~HCL~DLL~r~~~g---------~L~~eI~~VIsNH~----------dl~~~v~~~~IPfhhip~~~~---- 149 (287)
T COG0788 95 ILVS--KEDHCLGDLLYRWRIG---------ELPAEIVAVISNHD----------DLRPLVERFDIPFHHIPVTKE---- 149 (287)
T ss_pred EEEe--chHHHHHHHHHHHhcC---------CcCCceEEEEcCCH----------HHHHHHHHcCCCeeeccCCCC----
Confidence 9998 5788999999887532 23457778777883 256778899999998875421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc
Q 006087 167 KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (662)
Q Consensus 167 ~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha 201 (662)
...|..+| +.++..++|++.|++|-+.
T Consensus 150 --~k~e~E~~------~~~ll~~~~~DlvVLARYM 176 (287)
T COG0788 150 --NKAEAEAR------LLELLEEYGADLVVLARYM 176 (287)
T ss_pred --cchHHHHH------HHHHHHHhCCCEEeehhhH
Confidence 11344444 3467778899999998643
No 112
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=84.08 E-value=13 Score=37.28 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=79.7
Q ss_pred EEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHH--HHHHHHHHHHHcCCeEEEEEccccc
Q 006087 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE--EANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 86 LVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~--Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||=+==||||++-+..|. ..|. ++++.+.|..+-|.+.- =.+.++++|+++||++.+.+.+...
T Consensus 2 LLH~CCaPCs~~~~~~L~---~~g~-----------~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~ 67 (176)
T PF02677_consen 2 LLHICCAPCSTYPLERLR---EEGF-----------DVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEE 67 (176)
T ss_pred eeeecCccccHHHHHHHH---HCCC-----------CeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHH
Confidence 344456899998876654 3442 68888999999875432 2455889999999999877644211
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccc----ccC-hhhHHHHHHhhccCC
Q 006087 164 ---------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH----HAD-DQAELFILRLSRNSG 217 (662)
Q Consensus 164 ---------~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGH----haD-DqaET~LmrL~RGsG 217 (662)
..|..|.-+..|=.+|.+.-.+.|+++|+++..|.= |.| |++..+-.+++.-.|
T Consensus 68 w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~g 135 (176)
T PF02677_consen 68 WLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTTTLLISPYKNHELINEIGERLAKEYG 135 (176)
T ss_pred HHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEccccCcCccCHHHHHHHHHHHHHhhC
Confidence 012234567788888999999999999999766542 333 566666555555443
No 113
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=83.47 E-value=13 Score=39.86 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=67.9
Q ss_pred ccchHHHHHHHHH-HHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC
Q 006087 60 LTDMTKYREAFSR-RMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (662)
Q Consensus 60 ~i~~~~~~~~f~~-~i~~~~-------i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG 131 (662)
..+++++.+.|.+ .-...+ .....||+|-+||+. | .|-.++..+.. | .++.++.++.-||.
T Consensus 54 ~~~~~~l~~~l~~~~~~~~~l~i~l~~~~~~~ki~vl~Sg~g-~-nl~~l~~~~~~-g--------~l~~~i~~visn~~ 122 (280)
T TIGR00655 54 RLEESSLLAAFKSALAEKFEMTWELILADKLKRVAILVSKED-H-CLGDLLWRWYS-G--------ELDAEIALVISNHE 122 (280)
T ss_pred CCCHHHHHHHHHHHHHHHhCCEEEEecCCCCcEEEEEEcCCC-h-hHHHHHHHHHc-C--------CCCcEEEEEEEcCh
Confidence 3567888888877 433322 123468999999993 3 33444554432 2 12346777777873
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 132 LR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
+ +..+|+++|||+++..... .+.++ --..+.++.++++.|+|+++-..-=.-+.+
T Consensus 123 ---~-------~~~~A~~~gIp~~~~~~~~-------~~~~~-----~e~~~~~~l~~~~~Dlivlagym~il~~~~ 177 (280)
T TIGR00655 123 ---D-------LRSLVERFGIPFHYIPATK-------DNRVE-----HEKRQLELLKQYQVDLVVLAKYMQILSPDF 177 (280)
T ss_pred ---h-------HHHHHHHhCCCEEEcCCCC-------cchhh-----hHHHHHHHHHHhCCCEEEEeCchhhCCHHH
Confidence 1 2336889999998764210 11111 112355667788999999886544333333
No 114
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=82.65 E-value=2.2 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHh
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKT 107 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~ 107 (662)
.+|.|-+|||+|||++++|++....
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp 275 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVP 275 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcC
Confidence 6899999999999999999987543
No 115
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.43 E-value=16 Score=37.31 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=75.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH--HHHHHHHHHcCCeEEEEEc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA--NIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea--~~V~~~c~kLGIp~~i~~~ 159 (662)
..+|||=+--+|||.-.+.-+.+ .|. ++++.+-|-.+.|.+.-+. +.+.++|+++||++.--+.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~---~~~-----------~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY 68 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRD---SGI-----------KITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDY 68 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHh---cCc-----------ceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCc
Confidence 36799999999999888766543 221 5677778988887665443 4578999999999876554
Q ss_pred -c---ccc------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 006087 160 -D---WLD------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (662)
Q Consensus 160 -~---~~~------~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatG 198 (662)
+ |.. ..+..|--+..|=++|.+.-.+.|.++|++++-|+
T Consensus 69 ~~~~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~fttt 117 (204)
T COG1636 69 EDLEKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTTT 117 (204)
T ss_pred ccHHHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhhh
Confidence 1 211 11234456788999999999999999999987554
No 116
>PRK09982 universal stress protein UspD; Provisional
Probab=81.23 E-value=14 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=26.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD 129 (662)
++|+||+.|+.+|..++..+..+.+.. +.+++++||-
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~----------~a~l~llhV~ 40 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHN----------DAHLTLIHID 40 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHh----------CCeEEEEEEc
Confidence 589999999999988877665544321 1268888884
No 117
>PRK10116 universal stress protein UspC; Provisional
Probab=80.61 E-value=24 Score=32.28 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=58.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEE-eCC-CC----C----CcH-----HHHHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV-DHG-LR----E----ESK-----EEANIVSHRV 147 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhV-DHG-LR----~----eS~-----~Ea~~V~~~c 147 (662)
++|+|++-|..+|..++.....+.+.. ..+++++|+ +.. .. . +.. +..++.++++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV----------NGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLI 73 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh----------CCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999988776655543321 125777776 221 00 0 000 0012345556
Q ss_pred HHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 148 ~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
...|++.....+ + .|+. ...+.+.|++.++|.|++|+|...-.+.+
T Consensus 74 ~~~~~~~~~~~~-~------~G~~--------~~~I~~~a~~~~~DLiV~g~~~~~~~~~~ 119 (142)
T PRK10116 74 QDADYPIEKTFI-A------YGEL--------SEHILEVCRKHHFDLVICGNHNHSFFSRA 119 (142)
T ss_pred HhcCCCeEEEEE-e------cCCH--------HHHHHHHHHHhCCCEEEEcCCcchHHHHH
Confidence 677776532222 1 1211 13356788999999999999987554443
No 118
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=80.58 E-value=16 Score=33.63 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=54.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC---C----C-cHH--------HHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---E----E-SKE--------EANIVSHR 146 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR---~----e-S~~--------Ea~~V~~~ 146 (662)
++|+||+-|...|..++..+..+.... ..+++++||+.... . . ..+ ..+.++++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPY----------NAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTEL 73 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhh----------CCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 689999999999988876655543321 12688889853210 0 0 000 01223444
Q ss_pred HHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc
Q 006087 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (662)
Q Consensus 147 c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha 201 (662)
++..|++...... +. |+. +..+.+.|+++++|.|++|+|.
T Consensus 74 ~~~~~~~~~~~~~-~~------G~p--------~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 74 STNAGYPITETLS-GS------GDL--------GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred HHhCCCCceEEEE-Ee------cCH--------HHHHHHHHHHhCCCEEEEeCcc
Confidence 5556766432211 11 111 1235567899999999999995
No 119
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=78.42 E-value=20 Score=38.59 Aligned_cols=117 Identities=11% Similarity=0.143 Sum_probs=70.9
Q ss_pred cccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC
Q 006087 59 YLTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (662)
Q Consensus 59 ~~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG 131 (662)
...+++++.+.|.+.-...++ ....||+|-+||+.= .|-.|+..++. | .++.++.+|.-||.
T Consensus 63 ~~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg~g~--nl~al~~~~~~-~--------~l~~~i~~visn~~ 131 (289)
T PRK13010 63 EAASVDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFDH--CLNDLLYRWRM-G--------ELDMDIVGIISNHP 131 (289)
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEecCCCCeEEEEEEeCCCc--cHHHHHHHHHC-C--------CCCcEEEEEEECCh
Confidence 345678888888776555432 234689999999843 33344454432 2 13346777777873
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 132 LR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
+ +.++|+++|||+++++... ......+ ..+.++.++++.|.++++-...=.-+.+
T Consensus 132 -------~---~~~~A~~~gIp~~~~~~~~----~~~~~~~--------~~~~~~l~~~~~Dlivlagym~il~~~~ 186 (289)
T PRK13010 132 -------D---LQPLAVQHDIPFHHLPVTP----DTKAQQE--------AQILDLIETSGAELVVLARYMQVLSDDL 186 (289)
T ss_pred -------h---HHHHHHHcCCCEEEeCCCc----ccccchH--------HHHHHHHHHhCCCEEEEehhhhhCCHHH
Confidence 1 2488999999998875321 1111111 2355667788999999987554443443
No 120
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=76.41 E-value=28 Score=37.31 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=67.8
Q ss_pred ccccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC
Q 006087 58 EYLTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (662)
Q Consensus 58 ~~~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH 130 (662)
+.+.+.+.+.+.|.+.-...++ .+..||+|-+||+ ...|-.|+..+.. + .++.++.+|.-|+
T Consensus 58 ~~~~~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~--gsnl~al~~~~~~-~--------~~~~~i~~visn~ 126 (286)
T PRK06027 58 GLIFNLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKE--DHCLGDLLWRWRS-G--------ELPVEIAAVISNH 126 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCC--CCCHHHHHHHHHc-C--------CCCcEEEEEEEcC
Confidence 3456688888888766655432 3457899999999 3444445554432 2 1234677777676
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 131 GLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
. .+..+|+++|||+++.+... . . ....+ ..+.++.++++.|.|+++-..-
T Consensus 127 ~----------~~~~lA~~~gIp~~~~~~~~--~-~-~~~~~--------~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 127 D----------DLRSLVERFGIPFHHVPVTK--E-T-KAEAE--------ARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred h----------hHHHHHHHhCCCEEEeccCc--c-c-cchhH--------HHHHHHHHHhCCCEEEEecchh
Confidence 2 23456999999998764321 0 0 01111 2255666778899999886443
No 121
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=74.29 E-value=39 Score=36.29 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=70.5
Q ss_pred cccccchHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe
Q 006087 57 VEYLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (662)
Q Consensus 57 ~~~~i~~~~~~~~f~~~i~~~~-------i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD 129 (662)
+|...+.+.+++.|.+.-...+ -.+..||+|.+||+ . ..|-.|+..++ .| .++.++.+|.-|
T Consensus 57 ~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~-g-~nl~al~~~~~-~~--------~~~~~i~~visn 125 (286)
T PRK13011 57 SEEGLDEDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKF-D-HCLNDLLYRWR-IG--------ELPMDIVGVVSN 125 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCC-c-ccHHHHHHHHH-cC--------CCCcEEEEEEEC
Confidence 3445568888888877655433 23456899999997 3 33344444433 22 123367777778
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 130 HGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
|. .+..+|+++|||+++.+.. + .+.++. -..+.++.++++.|.++++...-=.-+.+
T Consensus 126 ~~----------~~~~lA~~~gIp~~~~~~~-----~--~~~~~~-----~~~~~~~l~~~~~Dlivlagy~~il~~~~ 182 (286)
T PRK13011 126 HP----------DLEPLAAWHGIPFHHFPIT-----P--DTKPQQ-----EAQVLDVVEESGAELVVLARYMQVLSPEL 182 (286)
T ss_pred Cc----------cHHHHHHHhCCCEEEeCCC-----c--Cchhhh-----HHHHHHHHHHhCcCEEEEeChhhhCCHHH
Confidence 63 1455689999999876421 1 111111 11255666778999999987554333333
No 122
>PRK15005 universal stress protein F; Provisional
Probab=70.82 E-value=18 Score=33.21 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCcccccccccC
Q 006087 182 LFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 182 ~L~e~A~e~G~d~LatGHhaD 202 (662)
.+.+.++++++|.|++|+|..
T Consensus 98 ~I~~~a~~~~~DLIV~Gs~~~ 118 (144)
T PRK15005 98 RILELAKKIPADMIIIASHRP 118 (144)
T ss_pred HHHHHHHHcCCCEEEEeCCCC
Confidence 366778999999999998753
No 123
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=64.76 E-value=16 Score=31.89 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH-------HHHHHHH---------HH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK-------EEANIVS---------HR 146 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~-------~Ea~~V~---------~~ 146 (662)
++|+|+++|+.+|-.++..+..+.... ..+++++||..-...... .+..... ..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~----------~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS----------GAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEE 72 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh----------CCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHH
Confidence 689999999999999887666554321 126889998754321110 0000000 01
Q ss_pred HHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 147 c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
+...+.......... ++. .+.+.+++++.+++.|++|++..
T Consensus 73 ~~~~~~~~~~~~~~~-------~~~--------~~~i~~~~~~~~~dliv~G~~~~ 113 (140)
T PF00582_consen 73 AEAEGGIVIEVVIES-------GDV--------ADAIIEFAEEHNADLIVMGSRGR 113 (140)
T ss_dssp HHHHTTSEEEEEEEE-------SSH--------HHHHHHHHHHTTCSEEEEESSST
T ss_pred HhhhccceeEEEEEe-------ecc--------chhhhhccccccceeEEEeccCC
Confidence 222344333332221 121 13366788999999999999873
No 124
>PRK15456 universal stress protein UspG; Provisional
Probab=63.57 E-value=81 Score=29.02 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=17.1
Q ss_pred HHHHHHHcCCcccccccccC
Q 006087 183 FQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 183 L~e~A~e~G~d~LatGHhaD 202 (662)
+.++++++++|.|++|+|..
T Consensus 97 I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 97 VNELAEELGADVVVIGSRNP 116 (142)
T ss_pred HHHHHhhcCCCEEEEcCCCC
Confidence 56678899999999999875
No 125
>PRK11175 universal stress protein UspE; Provisional
Probab=59.24 E-value=72 Score=33.24 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=55.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEE--eCCCC------CCc-H-------HH-HHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV--DHGLR------EES-K-------EE-ANIVSH 145 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhV--DHGLR------~eS-~-------~E-a~~V~~ 145 (662)
++|+|++.|..+|-..+.....+.+.. ...++++|+ +.... .+. . ++ .+.+++
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRN----------GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhc----------CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 579999999999888776655443321 115666665 22111 000 0 00 111223
Q ss_pred HH---HHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 146 RV---SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 146 ~c---~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
.+ ...|++....-. |. +.+ ...+.+.|+++++|.|++|+|.....+..
T Consensus 74 ~~~~~~~~~~~~~~~v~-~~------g~~--------~~~i~~~a~~~~~DLiV~G~~~~~~~~~~ 124 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVV-WH------NRP--------FEAIIQEVIAGGHDLVVKMTHQHDKLESV 124 (305)
T ss_pred HHHHHhhcCCceEEEEe-cC------CCc--------HHHHHHHHHhcCCCEEEEeCCCCcHHHhh
Confidence 22 334665544321 21 111 24577888999999999999977654443
No 126
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=57.86 E-value=99 Score=32.54 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=58.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC-C-cHHHH----------HHHHHHHHHcC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-E-SKEEA----------NIVSHRVSDMG 151 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~-e-S~~Ea----------~~V~~~c~kLG 151 (662)
|++--+|||+||.--++-+ .+.|. +++|+ -| +++ + +.+|. ..+.-+++-++
T Consensus 2 rvvaLiSGGKDScynmm~c---v~~gH-----------eiVaL-an--l~p~~d~~delDSyMyQtVGh~~i~lyaecm~ 64 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCC---VRLGH-----------EIVAL-AN--LHPKEDESDELDSYMYQTVGHDVIDLYAECMG 64 (277)
T ss_pred cEEEEEeCChHHHHHHHHH---HHcCC-----------eeeee-ec--ccCCcccchhHHHHHHHhhhHHHHHHHHHHhc
Confidence 5788899999997655433 23342 34443 22 343 2 11121 22445788899
Q ss_pred CeEEEEEccccc------CCCCCC-CHHHHHHHHHHHHHHHHHHHc-CCcccccccccChhhHH
Q 006087 152 IRCEIVRCDWLD------GRPKQG-HLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAEL 207 (662)
Q Consensus 152 Ip~~i~~~~~~~------~~~~~~-niE~~AR~~RY~~L~e~A~e~-G~d~LatGHhaDDqaET 207 (662)
+|++..++.-.. +....+ .+|+ -|.++...-+++ ..+.|.+|--+.|.--|
T Consensus 65 lPlyrr~i~g~s~nq~l~Y~~t~~DEvED-----Ly~ll~~VK~~~p~~eaVS~GAIlS~YQr~ 123 (277)
T KOG2316|consen 65 LPLYRRRIRGRSINQKLQYTKTEGDEVED-----LYELLKTVKEKIPDVEAVSVGAILSDYQRT 123 (277)
T ss_pred CceeeeeccCcccccccccccCCCchHHH-----HHHHHHHHHhhCCCceeeehhhhHhHHHHH
Confidence 999887654211 111111 2333 477787777777 67888888888775333
No 127
>PRK11175 universal stress protein UspE; Provisional
Probab=55.61 E-value=58 Score=33.92 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 142 ~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
.++++++.+|++.....+ . .|++. ..+.+.+++.++|.|++|+|..-
T Consensus 227 ~l~~~~~~~~~~~~~~~v--~-----~G~~~--------~~I~~~a~~~~~DLIVmG~~~~~ 273 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHV--E-----EGLPE--------EVIPDLAEHLDAELVILGTVGRT 273 (305)
T ss_pred HHHHHHHHhCCChhheee--c-----cCCHH--------HHHHHHHHHhCCCEEEECCCccC
Confidence 456677777876432211 1 12222 23667899999999999998653
No 128
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=52.77 E-value=1.2e+02 Score=31.64 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEeCCC--CCCcHH-HHHHHHH
Q 006087 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGL--REESKE-EANIVSH 145 (662)
Q Consensus 70 f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVDHGL--R~eS~~-Ea~~V~~ 145 (662)
+.+.+....+..++.+.+|+|||..=.-+...|.+. ...... | .++..+.+|-.+ -.+.++ -..++++
T Consensus 20 i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~-------w-~~v~if~~DEr~~Vp~~~~~Sn~~~~~~ 91 (253)
T PTZ00285 20 IIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVS-------F-SNVVTFNMDEYVGLPRDHPQSYHYFMKE 91 (253)
T ss_pred HHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCc-------h-hHeEEECCcEEecCCCCchHHHHHHHHH
Confidence 333333324456778999999998777666555532 222221 2 167777888654 222221 1223443
Q ss_pred -HHHHcCCeEE-EEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 006087 146 -RVSDMGIRCE-IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (662)
Q Consensus 146 -~c~kLGIp~~-i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatG 198 (662)
+...++||-. +..++ ....+++++|+ ||+... .+..++|.+++|
T Consensus 92 ~l~~~~~ip~~~~~~~~-----~~~~~~~~~~~--~y~~~i--~~~~~~Dl~lLG 137 (253)
T PTZ00285 92 NFFDHVDIKEENRHILN-----GTAPDLEEECR--RYEEKI--RAVGGIDLFLAG 137 (253)
T ss_pred HHhccCCCCHhhEEcCC-----CCCcCHHHHHH--HHHHHH--HHhCCCcEEEeC
Confidence 3445566531 11111 11124566664 465322 122357777664
No 129
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=51.34 E-value=1.9e+02 Score=32.23 Aligned_cols=105 Identities=8% Similarity=0.001 Sum_probs=57.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEE-eCCCC-CC---cHHH----HHHHHHHHHH---
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV-DHGLR-EE---SKEE----ANIVSHRVSD--- 149 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhV-DHGLR-~e---S~~E----a~~V~~~c~k--- 149 (662)
-+||+||+-|..-|.-.+.-+.++.+.. |...+++++|| ++... .. ...+ .+.+++.+++
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~--------g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEA--------AETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhc--------CCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3689999999999987765554443321 00126888886 33211 11 0011 2334445544
Q ss_pred ---cCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 150 ---MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 150 ---LGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
.|++++..-..-..+--..|++- +.+.++|+++++|.|++|--.+
T Consensus 77 ~~~~gV~ve~~vv~~~~~~~~~G~pa--------e~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 77 DDASSVTIETALLGTDEYLFGPGDYA--------EVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred cccCCCceEEEEEeccccccCCCCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 47876544321100000112221 2356889999999999997665
No 130
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=49.74 E-value=11 Score=32.14 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=23.1
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceEecc
Q 006087 627 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660 (662)
Q Consensus 627 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p 660 (662)
+.++-+.- .-||..-|..+|||.. +|++++||
T Consensus 22 ~lKk~~~e-~kIP~~~R~~~Pll~~-~~~iv~v~ 53 (74)
T PF11734_consen 22 KLKKLFQE-AKIPPWQRDRLPLLCD-GGEIVWVP 53 (74)
T ss_dssp EHHHHHHH-CT--HHHCCCSEEEEE-TTEEEEET
T ss_pred hHHHHHHH-cCCCHHHHCcEEEEEE-CCEEEEEe
Confidence 34444443 4699999999999999 77999987
No 131
>PLN02828 formyltetrahydrofolate deformylase
Probab=49.57 E-value=1.4e+02 Score=31.97 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHHcCC----------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC
Q 006087 62 DMTKYREAFSRRMAMAGL----------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~i----------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG 131 (662)
+.+.+.+.|...-...+. .+..||+|-+||+.= .|-.|+..++. | .++.++.+|.-||-
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~g~--nl~~ll~~~~~-g--------~l~~eI~~ViSn~~ 108 (268)
T PLN02828 40 PRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQDH--CLIDLLHRWQD-G--------RLPVDITCVISNHE 108 (268)
T ss_pred CHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCCCh--hHHHHHHhhhc-C--------CCCceEEEEEeCCC
Confidence 456777666654333222 345789999999853 33445555533 2 13346777777874
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEEE
Q 006087 132 LREESKEEANIVSHRVSDMGIRCEIVR 158 (662)
Q Consensus 132 LR~eS~~Ea~~V~~~c~kLGIp~~i~~ 158 (662)
=.+. ..+.++|+++|||++++.
T Consensus 109 ~~~~-----a~~~~~A~~~gIP~~~~~ 130 (268)
T PLN02828 109 RGPN-----THVMRFLERHGIPYHYLP 130 (268)
T ss_pred CCCC-----chHHHHHHHcCCCEEEeC
Confidence 2111 246788999999998764
No 132
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.75 E-value=53 Score=29.93 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=40.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC---CC--------CCCcHHHHHHHHHHHHHcCC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GL--------REESKEEANIVSHRVSDMGI 152 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH---GL--------R~eS~~Ea~~V~~~c~kLGI 152 (662)
+|+|+++||.=|+.++.-++++.++ .|++..+.++.+.- .. -|.-.--...+++.+...||
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~--------~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKE--------RGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGI 73 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCC
Confidence 5899999999998888877765443 23333444443220 00 11112233457888888899
Q ss_pred eEEEEE
Q 006087 153 RCEIVR 158 (662)
Q Consensus 153 p~~i~~ 158 (662)
|+.+++
T Consensus 74 pv~~I~ 79 (99)
T cd05565 74 KLVTTT 79 (99)
T ss_pred CEEEeC
Confidence 987765
No 133
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=41.94 E-value=55 Score=34.01 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=60.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC-CCCcHHHHHHHHHHHHHcC-CeEEEEEc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEANIVSHRVSDMG-IRCEIVRC 159 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL-R~eS~~Ea~~V~~~c~kLG-Ip~~i~~~ 159 (662)
+.-+..|+||--| +|+...++. .+. .+-++.+|.+- -|+. -....+.=+++| |++++...
T Consensus 46 ~~~~q~a~~G~~~-lvlid~~~~---~~~-----------~~~l~~idT~~~~PeT---~~l~d~VekkY~~i~I~~~~p 107 (261)
T KOG0189|consen 46 PNLFQTAASGLEG-LVLIDMLSK---TGR-----------PFRLFFIDTLHHFPET---LRLFDAVEKKYGNIRIHVYFP 107 (261)
T ss_pred hhHHHHHhccccc-hHHHHHHHH---cCC-----------CceeEEeeccccChHH---HHHHHHHHHhcCceEEEEEcc
Confidence 4557788998776 455555543 221 23466788652 2332 233334445788 88887754
Q ss_pred ccccC----CCC------CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 160 DWLDG----RPK------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 160 ~~~~~----~~~------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
+.... ..+ ..+-++.+|..+-+-+.+.-+.+++..++||...|
T Consensus 108 d~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRks 160 (261)
T KOG0189|consen 108 DAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKS 160 (261)
T ss_pred hhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEeccccc
Confidence 42110 011 11235666766667777778888889999998665
No 134
>PRK06852 aldolase; Validated
Probab=40.54 E-value=1.9e+02 Score=31.52 Aligned_cols=107 Identities=8% Similarity=-0.130 Sum_probs=58.6
Q ss_pred CCeEEEEEcCC----------hhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC--cHHHHHHHHHHHHH
Q 006087 82 HHRIALGVSGG----------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSD 149 (662)
Q Consensus 82 ~~kVLVAVSGG----------~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e--S~~Ea~~V~~~c~k 149 (662)
+-.++|=+||+ +++ .+..-..+..+-|. ..|++.+-+.+||+.|-..| .-++...+.+-|++
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~-~l~~sVeeAvrlG~-----~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~ 165 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLS-RQLLDVEQVVEFKE-----NSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHK 165 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccc-cceecHHHHHhcCC-----ccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 45699999986 445 44433444333321 11222356778999994322 22345566788999
Q ss_pred cCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccc
Q 006087 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (662)
Q Consensus 150 LGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHh 200 (662)
+|+|+.................+ .+. ...++|.++|+|.|=|-=.
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~----~ia--~aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPH----LIA--GAAGVAACLGADFVKVNYP 210 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHH----HHH--HHHHHHHHHcCCEEEecCC
Confidence 99997653322111001111222 222 2337888999998876654
No 135
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=38.90 E-value=2.2e+02 Score=29.42 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEe--CCCCCCcH--HHHHHHHHHHHHcCCeEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVD--HGLREESK--EEANIVSHRVSDMGIRCEI 156 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVD--HGLR~eS~--~Ea~~V~~~c~kLGIp~~i 156 (662)
++..++|||||.-=..++..+... ..... .| .++.++.+| .|.-.++. ......+.++++++++...
T Consensus 32 ~~~~~iglsgG~T~~~~~~~L~~~~~~~~~-------~~-~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~~~~ 103 (261)
T PRK00443 32 ERPFVLGLATGSSPLETYKALIELHKAGKV-------DF-SRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDIPPEN 103 (261)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhhhcCC-------ch-HHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCCCHHH
Confidence 345689999998766666555421 11111 12 267888888 55543221 1222455677888877543
Q ss_pred E
Q 006087 157 V 157 (662)
Q Consensus 157 ~ 157 (662)
+
T Consensus 104 ~ 104 (261)
T PRK00443 104 I 104 (261)
T ss_pred e
Confidence 3
No 136
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.44 E-value=1.1e+02 Score=32.65 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=56.8
Q ss_pred CCeEEEEEcCC------hhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCc--HHHHHHHHHHHHHcCCe
Q 006087 82 HHRIALGVSGG------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSHRVSDMGIR 153 (662)
Q Consensus 82 ~~kVLVAVSGG------~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS--~~Ea~~V~~~c~kLGIp 153 (662)
+..++|=+||| ++...+..-..+..+.|. +-+.+||+.|-..|. -++...+.+-|.++|+|
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA-----------dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA-----------CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC-----------CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 35699999997 332333322333333332 456789999943222 23455677889999999
Q ss_pred EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccc
Q 006087 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (662)
Q Consensus 154 ~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHh 200 (662)
+.. |. +....+..... --..-.+++.++|+|.|=|-=.
T Consensus 143 lla----~~---prG~~~~~~~~--~ia~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 143 VMA----VT---AVGKDMVRDAR--YFSLATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred EEE----Ee---cCCCCcCchHH--HHHHHHHHHHHHcCCEEecCCC
Confidence 765 22 11111222111 2234557888999998876554
No 137
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=36.57 E-value=1.4e+02 Score=30.22 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=49.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|=+||+....- .++..+...+ +...+.++.-|+. ++ .+.++|+++|||+...+...
T Consensus 2 ~ki~vl~sg~gs~~~--~ll~~~~~~~---------~~~~I~~vvs~~~---~~-----~~~~~a~~~gIp~~~~~~~~- 61 (200)
T PRK05647 2 KRIVVLASGNGSNLQ--AIIDACAAGQ---------LPAEIVAVISDRP---DA-----YGLERAEAAGIPTFVLDHKD- 61 (200)
T ss_pred ceEEEEEcCCChhHH--HHHHHHHcCC---------CCcEEEEEEecCc---cc-----hHHHHHHHcCCCEEEECccc-
Confidence 479999999844332 3344443322 1124555445653 22 26788999999987653210
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
. .+-+... ..+.++.++.++|++++++...
T Consensus 62 -~----~~~~~~~-----~~~~~~l~~~~~D~iv~~~~~~ 91 (200)
T PRK05647 62 -F----PSREAFD-----AALVEALDAYQPDLVVLAGFMR 91 (200)
T ss_pred -c----CchhHhH-----HHHHHHHHHhCcCEEEhHHhhh
Confidence 0 0111111 1244556677899988876543
No 138
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.17 E-value=75 Score=28.47 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=41.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC----C-------CCCCcHHHHHHHHHHHHHcC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH----G-------LREESKEEANIVSHRVSDMG 151 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH----G-------LR~eS~~Ea~~V~~~c~kLG 151 (662)
.+|++++.+|.=|..++.-++++.++ .|++.++.++.+.- . +-+.-......+++.++..|
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~--------~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEE--------YGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKG 75 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHH--------CCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcC
Confidence 68999999999888777656555433 23333333333210 0 01122334566888888899
Q ss_pred CeEEEEEc
Q 006087 152 IRCEIVRC 159 (662)
Q Consensus 152 Ip~~i~~~ 159 (662)
+|..+++-
T Consensus 76 ipv~~I~~ 83 (95)
T TIGR00853 76 IPVEVING 83 (95)
T ss_pred CCEEEeCh
Confidence 99887653
No 139
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=35.33 E-value=3.3e+02 Score=32.36 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhC-CCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH
Q 006087 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~-g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea 140 (662)
+|++..+++.+++.+ +++|+|-=---+|.++...++....+. |. .-+..+|-|.+.+.=.-..
T Consensus 54 ~m~~a~~ri~~ai~~-----~e~I~I~gDyD~DGitstail~~~L~~~g~-----------~~~~~~IP~R~~eGYGl~~ 117 (575)
T PRK11070 54 GIEKAVELLYNALRE-----GTRIIVVGDFDADGATSTALSVLALRSLGC-----------SNVDYLVPNRFEDGYGLSP 117 (575)
T ss_pred CHHHHHHHHHHHHHC-----CCEEEEEEecCccHHHHHHHHHHHHHHcCC-----------CceEEEeCCCCcCCCCCCH
Confidence 355555555555544 688988877788877766665543332 21 1123355543321000011
Q ss_pred HHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
..+.++.+ .|..+.| .+|- ..++.++. +.|+++|+++|+|-||..
T Consensus 118 ~~i~~~~~-~~~~LiI-tvD~-----Gi~~~e~i----------~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 118 EVVDQAHA-RGAQLIV-TVDN-----GISSHAGV----------AHAHALGIPVLVTDHHLP 162 (575)
T ss_pred HHHHHHHh-cCCCEEE-EEcC-----CcCCHHHH----------HHHHHCCCCEEEECCCCC
Confidence 23444443 4776543 3332 23345544 457788999999999965
No 140
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.35 E-value=49 Score=30.72 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
+||+|+++|+....-...++..+++.|
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g 27 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAG 27 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCC
Confidence 489999999999999888888877654
No 141
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.79 E-value=3.6e+02 Score=31.08 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=62.8
Q ss_pred EEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccC
Q 006087 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (662)
Q Consensus 85 VLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~ 164 (662)
.+||+=|..=.+....|+..++++++ .+..|..|. .|+. ..+..+.++++.|+|++-..
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~~~-----------kvllVaaD~-~RpA---A~eQL~~La~q~~v~~f~~~------ 162 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKKGK-----------KVLLVAADT-YRPA---AIEQLKQLAEQVGVPFFGSG------ 162 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHcCC-----------ceEEEeccc-CChH---HHHHHHHHHHHcCCceecCC------
Confidence 57889999899998888877776543 455666775 4653 34568899999999986431
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHH
Q 006087 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (662)
Q Consensus 165 ~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lmr 211 (662)
...++-+.|+.. -+.+++.++|+|++=.-...+++.-||.
T Consensus 163 --~~~~Pv~Iak~a-----l~~ak~~~~DvvIvDTAGRl~ide~Lm~ 202 (451)
T COG0541 163 --TEKDPVEIAKAA-----LEKAKEEGYDVVIVDTAGRLHIDEELMD 202 (451)
T ss_pred --CCCCHHHHHHHH-----HHHHHHcCCCEEEEeCCCcccccHHHHH
Confidence 111234444432 2456677788877654444444444443
No 142
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.69 E-value=3.3e+02 Score=27.44 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=53.9
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+|-+||+.....- ++..+...+ +..++.+|..|+. + ..+.++|+++|||+++.....
T Consensus 2 riail~sg~gs~~~~--ll~~~~~~~---------l~~~I~~vi~~~~---~-----~~~~~~A~~~gip~~~~~~~~-- 60 (190)
T TIGR00639 2 RIVVLISGNGSNLQA--IIDACKEGK---------IPASVVLVISNKP---D-----AYGLERAAQAGIPTFVLSLKD-- 60 (190)
T ss_pred eEEEEEcCCChhHHH--HHHHHHcCC---------CCceEEEEEECCc---c-----chHHHHHHHcCCCEEEECccc--
Confidence 789999998655443 344443322 2235656556763 1 245788999999987643211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
.. +.+. .=..+.++.++.+.|+++++...-=.-+.+
T Consensus 61 ~~----~~~~-----~~~~~~~~l~~~~~D~iv~~~~~~il~~~~ 96 (190)
T TIGR00639 61 FP----SREA-----FDQAIIEELRAHEVDLVVLAGFMRILGPTF 96 (190)
T ss_pred cC----chhh-----hhHHHHHHHHhcCCCEEEEeCcchhCCHHH
Confidence 00 1010 012355666778999998887654333333
No 143
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=32.91 E-value=67 Score=34.98 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 170 HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 170 niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
++.-.|+..-.+|+.+++++.++..+.|.|..+|.++.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~l 223 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATL 223 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHh
Confidence 35556677777899999999999999999999997653
No 144
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=32.38 E-value=83 Score=32.40 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH 130 (662)
+.++| |++|.||+.-|--++.++...++.+. .++++|-|-
T Consensus 84 i~~~D-vviaiS~SGeT~el~~~~~~aK~~g~-----------~liaiT~~~ 123 (202)
T COG0794 84 ITPGD-VVIAISGSGETKELLNLAPKAKRLGA-----------KLIAITSNP 123 (202)
T ss_pred CCCCC-EEEEEeCCCcHHHHHHHHHHHHHcCC-----------cEEEEeCCC
Confidence 45544 99999999999999999887766542 688888664
No 145
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.70 E-value=4.8e+02 Score=28.19 Aligned_cols=26 Identities=0% Similarity=-0.125 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHcCCCCCCeEEEEEcCC
Q 006087 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGG 92 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG 92 (662)
+++..+..++++-.. +..|++.+|-|
T Consensus 27 n~e~~~avi~AAe~~-----~sPvIl~~~~~ 52 (283)
T PRK07998 27 NLETTISILNAIERS-----GLPNFIQIAPT 52 (283)
T ss_pred CHHHHHHHHHHHHHh-----CCCEEEECcHh
Confidence 355555555554443 35678777654
No 146
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.23 E-value=1.9e+02 Score=29.78 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeEEEEEcCC---hhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH
Q 006087 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (662)
Q Consensus 61 i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG---~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~ 137 (662)
.+.+++.+++...+.... +-.-+-=--|+ .|..++-.++..+++.| ..+||..-.+.|.
T Consensus 71 ~~~~~i~~~l~~al~~vp---~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~g---------------l~FvDS~T~~~s~ 132 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVP---GAVGVNNHMGSRFTSDREAMRWVLEVLKERG---------------LFFVDSRTTPRSV 132 (213)
T ss_dssp S-HHHHHHHHHHHHCCST---T-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT----------------EEEE-S--TT-S
T ss_pred CCHHHHHHHHHHHHHHCC---CcEEEecCCCccccCCHHHHHHHHHHHHHcC---------------CEEEeCCCCcccH
Confidence 445667777776665432 11111111232 47777777777777664 2579988766553
Q ss_pred HHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhH
Q 006087 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (662)
Q Consensus 138 ~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaE 206 (662)
+.+.|+++|+|....++-.. . ..+.++..+. ...+.++|+++|. .|++||-...-++
T Consensus 133 -----a~~~A~~~gvp~~~rdvfLD---~-~~~~~~I~~q--l~~~~~~A~~~G~-aI~Igh~~p~Tl~ 189 (213)
T PF04748_consen 133 -----APQVAKELGVPAARRDVFLD---N-DQDEAAIRRQ--LDQAARIARKQGS-AIAIGHPRPETLE 189 (213)
T ss_dssp -----HHHHHHHCT--EEE-SEETT---S-T-SHHHHHHH--HHHHHHHHHCCSE-EEEEEE-SCCHHH
T ss_pred -----HHHHHHHcCCCEEeeceecC---C-CCCHHHHHHH--HHHHHHhhhhcCc-EEEEEcCCHHHHH
Confidence 56778899999877654221 1 1233444333 4557788888774 6889998877554
No 147
>PRK05920 aromatic acid decarboxylase; Validated
Probab=30.22 E-value=94 Score=31.92 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
.+++|++|+|||.=+.-.+.+++.+.+.|
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g 30 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAAD 30 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCC
Confidence 35789999999998888888888887655
No 148
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.06 E-value=1.6e+02 Score=27.07 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=40.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC---C----------CCCcHHHHHHHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG---L----------REESKEEANIVSHRVSD 149 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG---L----------R~eS~~Ea~~V~~~c~k 149 (662)
.+|++++.||.=|..++.-++++.+. .|+...+.++-+.-. . -+.-.-..+.+++.|+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e--------~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~ 73 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKE--------QGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK 73 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHH--------CCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh
Confidence 37999999999777666666655432 233223333322100 0 01112234457888888
Q ss_pred cCCeEEEEEcc
Q 006087 150 MGIRCEIVRCD 160 (662)
Q Consensus 150 LGIp~~i~~~~ 160 (662)
.|+|..+++-.
T Consensus 74 ~~ipv~~I~~~ 84 (104)
T PRK09590 74 VGKPVVQIPPQ 84 (104)
T ss_pred cCCCEEEeCHH
Confidence 99999887543
No 149
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=29.26 E-value=3.6e+02 Score=27.45 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=36.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHH--HHHHHH-HHHHcCCe
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE--ANIVSH-RVSDMGIR 153 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~E--a~~V~~-~c~kLGIp 153 (662)
+.++.+|+|||.-=..+...+.... ... | .++..+.+|..+=+....+ ..++++ +....+++
T Consensus 22 ~~~~~l~lsGGstp~~~y~~L~~~~--~i~-------w-~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ll~~~~~~ 86 (219)
T cd01400 22 RGRFSLALSGGSTPKPLYELLAAAP--ALD-------W-SKVHVFLGDERCVPPDDPDSNYRLAREALLSHVAIP 86 (219)
T ss_pred cCeEEEEECCCccHHHHHHHhcccc--CCC-------C-ceEEEEEeeccccCCCCcccHHHHHHHHhhccCCCC
Confidence 4689999999998887776554311 121 2 2678888997653221111 223443 34555665
No 150
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=28.31 E-value=1.3e+02 Score=29.09 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc
Q 006087 137 KEEANIVSHRVSD-MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (662)
Q Consensus 137 ~~Ea~~V~~~c~k-LGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha 201 (662)
+.+.+.+.+.+.+ .++.+.+++- .........+..... ..-+..|.++|+++|+..|++.|..
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~-l~~~~~~~~~~~~~~-~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDP-LQSLHDGDENSNSAV-AQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE--GGGG--S-TT-HHHH-HHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcC-HHHHhcCCCCCHHHH-HHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3445556777776 6888887762 111111112222332 4456778899999999988888864
No 151
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.48 E-value=91 Score=31.22 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
||+||+|||.-..-...++..+++.|
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g 26 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAG 26 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 58999999999988888888887654
No 152
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.09 E-value=1e+02 Score=30.91 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++|+||+||+.-+.-...++..+++.|
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g 28 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRG 28 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCC
Confidence 589999999999998888888876554
No 153
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.92 E-value=1.3e+02 Score=30.85 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCChhHHH-HHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSma-LL~LL~~~~~~g 109 (662)
.+++|++|+|||.=+.- ...++..+.+.|
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G 33 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEG 33 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCc
Confidence 46899999999988887 577888876654
No 154
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=24.93 E-value=1.2e+02 Score=30.20 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++|+||+||+.-..-...++..+++.|
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g 27 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLG 27 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCC
Confidence 479999999998887788888776544
No 155
>PLN02360 probable 6-phosphogluconolactonase
Probab=24.85 E-value=4.8e+02 Score=27.56 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEeCCCC
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVDHGLR 133 (662)
++++..+.+|+|||. ...++..+... ..... .| .++..+.+|..+-
T Consensus 38 ~~~~~~~~lalsGGS-~~~~~~~L~~~~~~~~i-------dW-~~v~~f~~DER~V 84 (268)
T PLN02360 38 VKERGVFAIALSGGS-LISFMGKLCEAPYNKTV-------DW-AKWYIFWADERVV 84 (268)
T ss_pred HHhCCcEEEEECCCC-HHHHHHHHhccccccCC-------CC-ceEEEEeeecccC
Confidence 456678999999996 34333333211 00111 22 2678888998654
No 156
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.62 E-value=5.8e+02 Score=29.15 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCCC--CCcHHHHHHHHHHHHHcCCeE--EEEEcccccCCCCCCCHHHHHHHHHHHH---HHHHHHHcCCccccc--ccc
Q 006087 130 HGLR--EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDMRYRL---FQKVCIQHQIGVLLI--AHH 200 (662)
Q Consensus 130 HGLR--~eS~~Ea~~V~~~c~kLGIp~--~i~~~~~~~~~~~~~niE~~AR~~RY~~---L~e~A~e~G~d~Lat--GHh 200 (662)
++|+ +-++++++..++.|+++|+.. .+.+.... -+ -.+....-|+.=++. -.+.|.+.|+.+|++ |++
T Consensus 166 r~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl--IN-LASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~ 242 (413)
T PTZ00372 166 RTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL--IN-LANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGST 242 (413)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce--ec-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4554 457788999999999998753 33333321 11 112222222222222 335788899998885 665
Q ss_pred cC
Q 006087 201 AD 202 (662)
Q Consensus 201 aD 202 (662)
..
T Consensus 243 ~~ 244 (413)
T PTZ00372 243 VG 244 (413)
T ss_pred CC
Confidence 43
No 157
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=24.30 E-value=1.2e+02 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHh
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKT 107 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~ 107 (662)
.+|++|+|||.-+.-...++..+.+
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k 26 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRD 26 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHh
Confidence 4799999999998888888888765
No 158
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.35 E-value=1e+03 Score=26.31 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=24.2
Q ss_pred cEEEEEEeCCCCCCc------HHHHHHHHHHHHHcCCeEEEE
Q 006087 122 GLLAITVDHGLREES------KEEANIVSHRVSDMGIRCEIV 157 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS------~~Ea~~V~~~c~kLGIp~~i~ 157 (662)
+.+.++|++|--.+. .+....+.+.|+++|+|+.+.
T Consensus 121 dAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 121 DAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred CEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 456778998854121 123455678899999998775
No 159
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.24 E-value=2.6e+02 Score=28.19 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEE
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~ 157 (662)
-++||.+|-.=++.++.|+..++.++. ++..++.|. .|. .-.+..+.+|+.+|+|++..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~-----------~v~lis~D~-~R~---ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGK-----------KVALISADT-YRI---GAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-------------EEEEEEST-SST---HHHHHHHHHHHHHTEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccc-----------cceeecCCC-CCc---cHHHHHHHHHHHhccccchh
Confidence 368999999999999999888765532 567778885 353 23456899999999998653
No 160
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=23.22 E-value=3.9e+02 Score=27.38 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=50.8
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+|-+||+.=-+-. ++..++ .+ .++.++.++..|.. + ..+.++|+++|||++..... .
T Consensus 1 ki~vl~Sg~Gsn~~a--l~~~~~-~~--------~l~~~i~~visn~~---~-----~~~~~~A~~~gIp~~~~~~~--~ 59 (207)
T PLN02331 1 KLAVFVSGGGSNFRA--IHDACL-DG--------RVNGDVVVVVTNKP---G-----CGGAEYARENGIPVLVYPKT--K 59 (207)
T ss_pred CEEEEEeCCChhHHH--HHHHHH-cC--------CCCeEEEEEEEeCC---C-----ChHHHHHHHhCCCEEEeccc--c
Confidence 588999998755544 333332 22 12336666666753 1 13578899999998764321 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
..+ |...-..+.+..++++.|.++++...-
T Consensus 60 ~~~---------~~~~~~~~~~~l~~~~~Dliv~agy~~ 89 (207)
T PLN02331 60 GEP---------DGLSPDELVDALRGAGVDFVLLAGYLK 89 (207)
T ss_pred CCC---------cccchHHHHHHHHhcCCCEEEEeCcch
Confidence 001 011112244556678999999987654
No 161
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=4.7e+02 Score=27.93 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=65.9
Q ss_pred cccchHHHHHHHHHHHHHcC----CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC
Q 006087 59 YLTDMTKYREAFSRRMAMAG----LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134 (662)
Q Consensus 59 ~~i~~~~~~~~f~~~i~~~~----i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~ 134 (662)
.....++..+++...+.... +.. ...=.+.--.| +|-.++..+++++ .+++|-|.-+
T Consensus 101 ~~~s~~e~~~rl~~a~~~v~~~~GlnN--hmGs~~tsn~~--aM~~~m~~Lk~r~---------------l~flDs~T~a 161 (250)
T COG2861 101 PGMSAEEILRRLRKAMNKVPDAVGLNN--HMGSRFTSNED--AMEKLMEALKERG---------------LYFLDSGTIA 161 (250)
T ss_pred cCCCHHHHHHHHHHHHhhCccceeehh--hhhhhhcCcHH--HHHHHHHHHHHCC---------------eEEEcccccc
Confidence 34446677778877776531 111 11112222222 3334555555543 4579998765
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 135 eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
.|- +-+++++.|||+...++-.. . ..+ +++-....+.+.++|+++| ..|+.||-.+
T Consensus 162 ~S~-----a~~iAk~~gVp~~~rdvfLD---~-e~~--~~~V~kql~~~~~~Ark~G-~ai~IGh~~~ 217 (250)
T COG2861 162 NSL-----AGKIAKEIGVPVIKRDVFLD---D-EDT--EAAVLKQLDAAEKLARKNG-SAIGIGHPHK 217 (250)
T ss_pred cch-----hhhhHhhcCCceeeeeeeec---C-cCC--HHHHHHHHHHHHHHHHhcC-ceEEecCCch
Confidence 542 46778899999876654221 1 112 3444455677899999987 5699999754
No 162
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=22.97 E-value=1e+02 Score=33.05 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEcccccCCCC-CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC--------hhhH
Q 006087 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--------DQAE 206 (662)
Q Consensus 136 S~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~-~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD--------DqaE 206 (662)
..+..+.-.++|.++|++...++.-|...... ..++-..--..--.-+.++|++.|...++-.|+.. +|.|
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~ 109 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLD 109 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHH
Confidence 46677778899999999999998888631100 00010111112234466789999999999999766 4555
Q ss_pred HHHHHhhccCCCcC
Q 006087 207 LFILRLSRNSGVLG 220 (662)
Q Consensus 207 T~LmrL~RGsGi~G 220 (662)
.++-++ ..-|+.|
T Consensus 110 ~~f~~~-~~~Gv~G 122 (273)
T PF10566_consen 110 EAFKLY-AKWGVKG 122 (273)
T ss_dssp HHHHHH-HHCTEEE
T ss_pred HHHHHH-HHcCCCE
Confidence 544444 3334443
No 163
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.91 E-value=5.5e+02 Score=31.01 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=54.4
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEeCCC--CCCcHH-HHHHHHH-HHHHcCCe
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGL--REESKE-EANIVSH-RVSDMGIR 153 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVDHGL--R~eS~~-Ea~~V~~-~c~kLGIp 153 (662)
+..++.+.+|+|||..=..+...|.+. ...+..+ .++..+.+|.-+ -+++.+ -..++++ +....+||
T Consensus 55 ~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w--------~~V~~F~~DEr~~vp~d~~~Sn~~~~re~L~~~i~Ip 126 (652)
T PRK02122 55 QAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSF--------KNVITFNLDEYYPMQPDSLQSYHRFMKENLFDHVDIP 126 (652)
T ss_pred HHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCc--------hheEEEeCeeccCCCCCcHHHHHHHHHHHhhccCCCC
Confidence 455778999999998877776665543 2222222 167777788654 333222 1223333 33455555
Q ss_pred EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 006087 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (662)
Q Consensus 154 ~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatG 198 (662)
-.-+.+. ........+++.|+. |+... .+.-|+|.+++|
T Consensus 127 ~~ni~~~--dg~~~~~~~~~~~~~--Ye~~I--~~~gg~DlvLLG 165 (652)
T PRK02122 127 PENIHIP--DGTIPKEEIDEYCRD--YEEKI--EAAGGIDFQLLG 165 (652)
T ss_pred HHHeecC--CCccCcCCHHHHHHH--HHHHH--HhhCCCcEEEeC
Confidence 3222211 111011246777764 44222 222368888874
No 164
>TIGR03356 BGL beta-galactosidase.
Probab=22.90 E-value=1.1e+02 Score=34.66 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=43.7
Q ss_pred HHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 145 ~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
++.+++|++++-..++|....|.....-....-.+|.-+.+.++++|+..++|=||-|
T Consensus 61 ~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 61 ALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 3456799999999999976555411112334456788999999999999999999976
No 165
>PRK13390 acyl-CoA synthetase; Provisional
Probab=22.75 E-value=4.3e+02 Score=29.27 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
+.+..+++.+.+...++.++++|+|...-|+|.++++..+.. .| ..++.+|.++++ ++
T Consensus 30 l~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~---~G-------------a~~~~l~~~~~~---~~--- 87 (501)
T PRK13390 30 LDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALR---SG-------------LYITAINHHLTA---PE--- 87 (501)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH---hC-------------CEEeccccCCCH---HH---
Confidence 444556666777788999999999999999999998654432 22 346678888753 22
Q ss_pred HHHHHHHcCCeEEEE
Q 006087 143 VSHRVSDMGIRCEIV 157 (662)
Q Consensus 143 V~~~c~kLGIp~~i~ 157 (662)
+..++...+..+.+.
T Consensus 88 ~~~~~~~~~~~~~i~ 102 (501)
T PRK13390 88 ADYIVGDSGARVLVA 102 (501)
T ss_pred HHHHHHhcCCcEEEE
Confidence 345555666665543
No 166
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.56 E-value=1.6e+02 Score=26.24 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=40.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe----CC-------CCCCcHHHHHHHHHHHHHcCC
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD----HG-------LREESKEEANIVSHRVSDMGI 152 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD----HG-------LR~eS~~Ea~~V~~~c~kLGI 152 (662)
+|++++.+|.=|..++.-++++..+ .|++.++.+..+. .. +-|.-..+...+++.+...++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~ 72 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEK--------RGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGI 72 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHH--------CCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCC
Confidence 5899999999888777656555433 2332233333321 00 012223345557777778899
Q ss_pred eEEEEEcc
Q 006087 153 RCEIVRCD 160 (662)
Q Consensus 153 p~~i~~~~ 160 (662)
|+..++..
T Consensus 73 pv~~I~~~ 80 (96)
T cd05564 73 PVAVIDMM 80 (96)
T ss_pred cEEEcChH
Confidence 98877543
No 167
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=3.8e+02 Score=25.78 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcCCh----------hHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC
Q 006087 68 EAFSRRMAMAGLKPHHRIALGVSGGP----------DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (662)
Q Consensus 68 ~~f~~~i~~~~i~~~~kVLVAVSGG~----------DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e 135 (662)
+.|.+.+.. +.++++|.|+|+|++ |-++..-+.....+. .+.++..|||+-|-|+.
T Consensus 13 e~~~~~~~~--~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~----------ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 13 ESFEETLKN--VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH----------APEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHH--HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh----------CCCceEEEEEEecCCCc
Confidence 445554444 345788999999999 566665555543332 12368889999997753
No 168
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.89 E-value=1.5e+02 Score=33.26 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
.+++|++|+||+..+.-.+.++..+.+.|
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g 30 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQG 30 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhCC
Confidence 36799999999999988888888876554
No 169
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=20.56 E-value=1.3e+02 Score=31.16 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHH-------------------------HHHHHHHHHHHHHHHHc
Q 006087 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-------------------------AARDMRYRLFQKVCIQH 190 (662)
Q Consensus 136 S~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~-------------------------~AR~~RY~~L~e~A~e~ 190 (662)
.+++.+.+...+.+.|+.=+-.++...- ..|.-|- +-|.-...++.++|.+.
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~L---SGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGEL---SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCcccc---CchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 3566777888888888854433332110 0111111 22677778899999999
Q ss_pred CCcccccccccChhhH
Q 006087 191 QIGVLLIAHHADDQAE 206 (662)
Q Consensus 191 G~d~LatGHhaDDqaE 206 (662)
+...+++.||.+|..-
T Consensus 180 ~~TllmVTH~~~Da~~ 195 (231)
T COG3840 180 KMTLLMVTHHPEDAAR 195 (231)
T ss_pred CCEEEEEeCCHHHHHH
Confidence 9999999999999653
Done!