Query 006087
Match_columns 662
No_of_seqs 325 out of 2234
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2k_A TRNA(Ile)-lysidine synt 100.0 6.2E-45 2.1E-49 401.0 25.6 298 69-384 4-313 (464)
2 1wy5_A TILS, hypothetical UPF0 100.0 6.9E-45 2.4E-49 381.8 21.6 305 63-402 4-315 (317)
3 1ni5_A Putative cell cycle pro 100.0 2.9E-43 1E-47 384.8 26.1 293 79-402 10-312 (433)
4 3k32_A Uncharacterized protein 99.9 3.4E-26 1.1E-30 225.9 5.1 164 83-280 7-179 (203)
5 3tqi_A GMP synthase [glutamine 99.9 1.4E-24 4.9E-29 242.7 10.1 196 42-265 198-407 (527)
6 2der_A TRNA-specific 2-thiouri 99.9 4.1E-23 1.4E-27 222.6 10.2 172 80-270 15-213 (380)
7 2hma_A Probable tRNA (5-methyl 99.9 4.4E-23 1.5E-27 222.0 9.7 171 81-270 8-205 (376)
8 2ywb_A GMP synthase [glutamine 99.8 2.7E-21 9.4E-26 215.0 13.6 184 42-258 178-373 (503)
9 3bl5_A Queuosine biosynthesis 99.8 2.6E-21 8.9E-26 189.9 9.1 152 82-257 3-176 (219)
10 1gpm_A GMP synthetase, XMP ami 99.8 1.5E-20 5E-25 210.2 13.3 187 42-258 195-395 (525)
11 2vxo_A GMP synthase [glutamine 99.8 1.8E-20 6.1E-25 215.7 14.2 199 42-267 208-445 (697)
12 2dpl_A GMP synthetase, GMP syn 99.8 3.4E-20 1.2E-24 194.5 13.8 167 63-258 3-180 (308)
13 3uow_A GMP synthetase; structu 99.8 2.1E-19 7.3E-24 202.2 14.9 195 42-264 223-435 (556)
14 2pg3_A Queuosine biosynthesis 99.8 1.7E-19 5.8E-24 180.2 7.1 152 83-258 3-181 (232)
15 1sur_A PAPS reductase; assimil 99.8 1.4E-18 4.6E-23 171.9 10.8 148 82-259 44-201 (215)
16 2c5s_A THII, probable thiamine 99.7 3E-18 1E-22 186.3 12.3 156 82-264 187-352 (413)
17 2e18_A NH(3)-dependent NAD(+) 99.7 2.2E-17 7.4E-22 168.0 12.2 172 61-269 4-185 (257)
18 1kor_A Argininosuccinate synth 99.7 2.3E-17 7.7E-22 179.1 12.6 153 83-265 1-171 (400)
19 2nz2_A Argininosuccinate synth 99.7 3E-17 1E-21 178.8 12.5 165 82-275 5-188 (413)
20 1k92_A Argininosuccinate synth 99.7 4.1E-17 1.4E-21 179.2 12.9 156 79-260 7-184 (455)
21 3p52_A NH(3)-dependent NAD(+) 99.7 1.3E-16 4.3E-21 162.9 11.3 174 62-269 5-189 (249)
22 1xng_A NH(3)-dependent NAD(+) 99.7 5.2E-16 1.8E-20 159.0 14.8 175 62-269 4-188 (268)
23 1zun_A Sulfate adenylyltransfe 99.6 1.4E-15 4.9E-20 160.7 13.7 159 83-262 47-228 (325)
24 2o8v_A Phosphoadenosine phosph 99.6 9.5E-16 3.3E-20 156.0 11.3 148 82-259 45-202 (252)
25 3fiu_A NH(3)-dependent NAD(+) 99.6 3.2E-15 1.1E-19 152.4 13.5 175 61-269 7-198 (249)
26 2oq2_A Phosphoadenosine phosph 99.5 1.2E-13 4.1E-18 141.3 10.8 150 83-259 42-207 (261)
27 1vl2_A Argininosuccinate synth 99.5 1.8E-13 6E-18 149.2 11.8 151 82-260 14-183 (421)
28 2goy_A Adenosine phosphosulfat 99.3 4.1E-12 1.4E-16 130.9 8.4 151 82-259 54-216 (275)
29 1wxi_A NH(3)-dependent NAD(+) 99.2 1.3E-10 4.6E-15 120.0 14.3 189 49-267 11-214 (275)
30 1vbk_A Hypothetical protein PH 99.2 2.7E-11 9.4E-16 127.0 8.1 120 82-256 179-307 (307)
31 2wsi_A FAD synthetase; transfe 99.2 3.2E-10 1.1E-14 118.8 15.7 147 82-259 53-214 (306)
32 1kqp_A NAD+ synthase, NH(3)-de 99.2 1.8E-10 6.2E-15 118.7 13.2 186 49-267 10-211 (271)
33 3q4g_A NH(3)-dependent NAD(+) 99.1 2.7E-10 9.4E-15 118.2 10.6 190 46-267 9-223 (279)
34 3n05_A NH(3)-dependent NAD(+) 99.0 2.3E-09 7.9E-14 121.3 12.5 162 62-255 305-473 (590)
35 3dpi_A NAD+ synthetase; ssgcid 98.9 4.1E-09 1.4E-13 109.7 11.5 171 64-265 31-221 (285)
36 3ilv_A Glutamine-dependent NAD 98.4 9.9E-07 3.4E-11 100.8 12.0 165 82-266 303-518 (634)
37 1ct9_A Asparagine synthetase B 98.2 4.5E-06 1.5E-10 94.0 12.0 137 63-205 208-354 (553)
38 3rjz_A N-type ATP pyrophosphat 98.2 4.2E-06 1.4E-10 85.0 9.9 139 83-264 5-148 (237)
39 3sdb_A Glutamine-dependent NAD 98.1 5.5E-06 1.9E-10 95.5 10.6 117 70-199 352-483 (680)
40 1jgt_A Beta-lactam synthetase; 98.1 5.6E-06 1.9E-10 92.4 9.7 120 66-205 226-354 (513)
41 1q15_A CARA; CMPR, (2S,5S)-5-c 98.1 4.3E-06 1.5E-10 93.1 8.0 134 53-205 201-351 (503)
42 3fwk_A FMN adenylyltransferase 97.9 0.00014 4.9E-09 76.3 15.7 147 82-259 58-217 (308)
43 4f4h_A Glutamine dependent NAD 96.9 0.0036 1.2E-07 70.7 11.6 114 72-206 293-418 (565)
44 3hgm_A Universal stress protei 91.6 0.58 2E-05 41.3 8.2 94 83-202 3-121 (147)
45 1tq8_A Hypothetical protein RV 90.9 2.1 7.2E-05 39.3 11.6 102 79-207 14-135 (163)
46 3dlo_A Universal stress protei 90.2 1.1 3.7E-05 40.9 8.9 96 83-202 25-128 (155)
47 3loq_A Universal stress protei 89.6 3.1 0.00011 41.4 12.5 99 81-207 169-267 (294)
48 3fdx_A Putative filament prote 89.4 0.17 6E-06 44.6 2.7 96 83-201 2-116 (143)
49 3idf_A USP-like protein; unive 89.2 1.7 5.8E-05 37.9 9.1 93 83-203 2-113 (138)
50 3tnj_A Universal stress protei 88.8 1.5 5.2E-05 38.8 8.5 98 82-205 6-123 (150)
51 3s3t_A Nucleotide-binding prot 88.2 0.46 1.6E-05 42.0 4.6 94 83-202 6-119 (146)
52 1jmv_A USPA, universal stress 88.1 1.7 6E-05 38.0 8.3 98 83-206 3-116 (141)
53 2z08_A Universal stress protei 86.6 2.4 8.2E-05 37.1 8.3 94 83-202 3-110 (137)
54 1mjh_A Protein (ATP-binding do 85.1 4.9 0.00017 36.0 9.8 95 82-202 5-131 (162)
55 2dum_A Hypothetical protein PH 85.1 1.8 6.2E-05 39.3 7.0 96 82-203 5-129 (170)
56 3fg9_A Protein of universal st 83.3 5 0.00017 35.8 9.0 97 82-203 15-131 (156)
57 2gm3_A Unknown protein; AT3G01 80.0 13 0.00043 33.8 10.7 100 82-204 5-137 (175)
58 3n0v_A Formyltetrahydrofolate 79.2 27 0.00092 35.9 13.8 119 59-210 60-185 (286)
59 3mt0_A Uncharacterized protein 77.6 5.1 0.00017 39.8 7.7 95 82-203 7-101 (290)
60 3mt0_A Uncharacterized protein 76.6 4.6 0.00016 40.2 7.0 98 81-203 133-249 (290)
61 3lou_A Formyltetrahydrofolate 71.9 59 0.002 33.5 14.2 119 60-211 66-191 (292)
62 3o1l_A Formyltetrahydrofolate 69.6 40 0.0014 35.0 12.3 116 60-208 76-198 (302)
63 3olq_A Universal stress protei 69.0 17 0.00057 36.3 9.1 104 81-207 155-282 (319)
64 3loq_A Universal stress protei 58.4 15 0.00051 36.4 6.4 99 82-206 22-138 (294)
65 3hj7_A TRNA(Ile)-lysidine synt 53.6 9.4 0.00032 35.5 3.6 33 627-660 75-107 (142)
66 3p9x_A Phosphoribosylglycinami 50.7 1.3E+02 0.0045 29.5 11.6 98 83-210 3-100 (211)
67 3olq_A Universal stress protei 50.7 37 0.0013 33.7 7.9 96 83-203 8-123 (319)
68 3obi_A Formyltetrahydrofolate 47.6 51 0.0018 33.9 8.4 119 60-211 60-186 (288)
69 3ab8_A Putative uncharacterize 43.8 28 0.00095 33.7 5.5 37 83-129 1-37 (268)
70 3e15_A Glucose-6-phosphate 1-d 43.8 83 0.0028 32.8 9.3 103 78-198 55-165 (312)
71 2qv5_A AGR_C_5032P, uncharacte 41.2 1E+02 0.0035 31.3 9.3 114 61-207 107-226 (261)
72 3da8_A Probable 5'-phosphoribo 41.0 1.2E+02 0.0039 29.9 9.5 96 83-210 13-108 (215)
73 3cis_A Uncharacterized protein 40.8 56 0.0019 32.5 7.3 39 82-130 171-209 (309)
74 3av3_A Phosphoribosylglycinami 40.2 1.9E+02 0.0066 28.0 10.9 97 83-209 4-100 (212)
75 3zqu_A Probable aromatic acid 39.9 36 0.0012 33.5 5.6 29 81-109 3-31 (209)
76 3nrb_A Formyltetrahydrofolate 39.4 80 0.0027 32.4 8.3 117 63-211 62-185 (287)
77 2ywr_A Phosphoribosylglycinami 39.1 1.1E+02 0.0037 29.9 8.9 89 84-202 3-91 (216)
78 3auf_A Glycinamide ribonucleot 35.4 1.3E+02 0.0045 29.7 8.9 97 83-209 23-119 (229)
79 2nly_A BH1492 protein, diverge 34.2 1.9E+02 0.0064 29.1 9.9 111 61-203 80-196 (245)
80 3cis_A Uncharacterized protein 34.1 53 0.0018 32.6 5.9 38 82-129 19-56 (309)
81 1ne7_A Glucosamine-6-phosphate 31.4 2.1E+02 0.007 28.9 9.9 100 82-198 32-137 (289)
82 2ejb_A Probable aromatic acid 31.2 60 0.002 31.3 5.5 27 83-109 2-28 (189)
83 3kcq_A Phosphoribosylglycinami 29.3 1.9E+02 0.0064 28.4 8.8 95 81-210 7-101 (215)
84 3ab8_A Putative uncharacterize 27.5 1.1E+02 0.0037 29.4 6.7 89 81-199 153-242 (268)
85 1g63_A Epidermin modifying enz 26.4 48 0.0017 31.8 3.8 27 83-109 3-29 (181)
86 3qjg_A Epidermin biosynthesis 25.9 57 0.002 31.1 4.2 27 83-109 6-32 (175)
87 3nbm_A PTS system, lactose-spe 24.6 1.5E+02 0.0053 25.9 6.5 68 81-158 5-85 (108)
88 1p3y_1 MRSD protein; flavoprot 24.3 45 0.0016 32.3 3.2 27 82-108 8-34 (194)
89 3lqk_A Dipicolinate synthase s 23.7 50 0.0017 32.2 3.4 29 81-109 6-35 (201)
90 4ds3_A Phosphoribosylglycinami 23.7 5.1E+02 0.017 25.1 10.9 97 83-209 8-104 (209)
91 3mcu_A Dipicolinate synthase, 23.6 57 0.002 32.0 3.8 29 81-109 4-33 (207)
92 3hn6_A Glucosamine-6-phosphate 23.2 3E+02 0.01 28.0 9.4 100 82-198 53-158 (289)
93 1jkx_A GART;, phosphoribosylgl 22.9 4.4E+02 0.015 25.4 10.1 96 84-209 2-97 (212)
94 3tqr_A Phosphoribosylglycinami 22.2 3.6E+02 0.012 26.3 9.4 96 83-209 6-101 (215)
95 1qzu_A Hypothetical protein MD 21.8 49 0.0017 32.3 2.9 27 81-107 18-44 (206)
96 2ri0_A Glucosamine-6-phosphate 21.4 2.9E+02 0.0098 26.5 8.4 91 86-199 31-126 (234)
97 1mvl_A PPC decarboxylase athal 20.4 85 0.0029 30.8 4.3 27 82-108 19-45 (209)
No 1
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=6.2e-45 Score=401.00 Aligned_cols=298 Identities=23% Similarity=0.289 Sum_probs=240.1
Q ss_pred HHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CCcHHHHHHHHHH
Q 006087 69 AFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146 (662)
Q Consensus 69 ~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~eS~~Ea~~V~~~ 146 (662)
+|.+.+..+. +.++++|+||||||+|||||+++++++.... | +++.|+|||||+| ++|++|+++|+++
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~--------~--~~v~avhvdhglrg~~s~~~~~~v~~~ 73 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW--------K--LQVIAAHVDHMFRGRESEEEMEFVKRF 73 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT--------T--CBCEEEEEECTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc--------C--CeEEEEEEECCCCccccHHHHHHHHHH
Confidence 4666777764 8889999999999999999999998875431 2 2688999999999 7788999999999
Q ss_pred HHHcCCeEEEEEcccccC-CCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccc
Q 006087 147 VSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (662)
Q Consensus 147 c~kLGIp~~i~~~~~~~~-~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~ 225 (662)
|+++|||+++.+++.... .....++|++||.+||++|.++|+++|+++|+||||+|||+||+||++.||+|+.||+||+
T Consensus 74 ~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~ 153 (464)
T 3a2k_A 74 CVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIP 153 (464)
T ss_dssp HHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSC
T ss_pred HHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCC
Confidence 999999999998865321 1223478999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-----ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHH
Q 006087 226 FSS-----QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISAC 297 (662)
Q Consensus 226 ~~~-----~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~l 297 (662)
+.+ .++||++.+ ++.||+.||+++|++|++||||++..|.||+||+.+.|.. +|.+..++.++++.+
T Consensus 154 ~~~~~~~~~iiRPLl~~-----~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~ 228 (464)
T 3a2k_A 154 VKRPFHGGYLIRPFLAV-----SRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMM 228 (464)
T ss_dssp SEEECSSSEEECGGGGS-----CHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccccCCCCEEECCCccC-----cHHHHHHHHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHH
Confidence 864 477888754 5789999999999999999999999999999999987765 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCC-cccccCchHHHHHHHHHcCCC
Q 006087 298 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR-QRPVRGSTSKLLLHYIRTFPC 376 (662)
Q Consensus 298 ~~~~~~Le~~~~~ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~-~~~~R~~~l~~Ll~~lr~~~~ 376 (662)
+++.+++++.++..+.+.+...+ +...++...|... .....++++...+...++. ...+....+..+++.+.....
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (464)
T 3a2k_A 229 AEDEQFLEELAADALNKVMEKQH-RDAALSIGPFLEL--PRPLQRRVLQLLLLRLYGGVPPTLTSVHIGHILMLCERGRP 305 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTEECSS-SSCEECHHHHHHS--CHHHHHHHHHHHHHHTTSCCTTCCHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHHHHHHHhhhccC-CcEEEEHHHHhcC--CHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcCCC
Confidence 99999999998888776642222 3346776666432 2234556777777766543 345556667777777765333
Q ss_pred CCceeecc
Q 006087 377 KTSLTAAG 384 (662)
Q Consensus 377 ~~~~Tl~G 384 (662)
+..+.++|
T Consensus 306 ~~~~~l~~ 313 (464)
T 3a2k_A 306 SGMIDLPK 313 (464)
T ss_dssp EEEEECST
T ss_pred CcEEEeCC
Confidence 33455643
No 2
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=6.9e-45 Score=381.79 Aligned_cols=305 Identities=17% Similarity=0.190 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCc-EEEEEEeCCCCCCcHHHH
Q 006087 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEA 140 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~-L~AvhVDHGLR~eS~~Ea 140 (662)
++.+.++|.+.+..+. +.++++|+||||||+||++|+++++++... .| .+ +.++|||||+|+++++|+
T Consensus 4 ~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~--------~g--~~~v~av~vd~g~r~~s~~~~ 73 (317)
T 1wy5_A 4 ESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY--------FS--LKEVALAHFNHMLRESAERDE 73 (317)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT--------TT--CSEEEEEEEECCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH--------cC--CCEEEEEEEECCCCcccHHHH
Confidence 4567888888888764 788999999999999999999999865321 12 36 899999999998889999
Q ss_pred HHHHHHHHHcCCeEEEEEcccccCC-CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCc
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLDGR-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~~~-~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~ 219 (662)
++++++|+++|||++++++++.... ....++|..||.+||++|.++|+++|+++|+||||+|||+||++|++.||+|+.
T Consensus 74 ~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~ 153 (317)
T 1wy5_A 74 EFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLD 153 (317)
T ss_dssp HHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999987653211 123479999999999999999999999999999999999999999999999999
Q ss_pred Ccccccccc-ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHH
Q 006087 220 GLAGMAFSS-QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVIS 295 (662)
Q Consensus 220 GLaGM~~~~-~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~ 295 (662)
||+||++.. .+++|++.+ +|.||..||+++|++|++||||.++.|.||+||+.+.|.. +|.+..++.++++
T Consensus 154 gl~~~~~~~~~iirPLl~~-----~k~eI~~~~~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~~~~~ 228 (317)
T 1wy5_A 154 GLIGFLPKEEVIRRPLYYV-----KRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLKMVK 228 (317)
T ss_dssp HHHCSCSEETTEECTTTTC-----CHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHHCTTHHHHHHHHHH
T ss_pred cccCCCCCCCeEECCCccC-----CHHHHHHHHHHcCCCeeECCCCCCCccHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999998753 477888864 5789999999999999999999999999999999887754 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHcCC
Q 006087 296 ACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP 375 (662)
Q Consensus 296 ~l~~~~~~Le~~~~~ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~~~~~R~~~l~~Ll~~lr~~~ 375 (662)
.++++.++++..++..+.+.. . ...++...|...+ ..+.++++...+... ....+..+++.+..
T Consensus 229 ~~~~~~~~l~~~~~~~~~~~~---~--~~~l~~~~l~~~~--~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~-- 292 (317)
T 1wy5_A 229 VLRAEREFLEEEAQKLYKEVK---K--GNCLDVKKLKEKP--LALQRRVIRKFIGEK-------DYEKVELVRSLLEK-- 292 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHE---E--TTEECHHHHTTSC--HHHHHHHHHHHHTCC-------CHHHHHHHHGGGTS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc---c--CcEEcHHHHhcCC--HHHHHHHHHHHHHHC-------CHHHHHHHHHHHhc--
Confidence 999999999999887776642 1 1346666664432 233445555444321 23334555544444
Q ss_pred CCCceeecceEEecCCCCCCCeEEEEe
Q 006087 376 CKTSLTAAGCYLCPTPGSRGTKALVCS 402 (662)
Q Consensus 376 ~~~~~Tl~Gc~i~~~~~~~g~~vlV~~ 402 (662)
++.++++|++.. ...++.+++++
T Consensus 293 -~~~~~l~~~~~~---~~~~~~l~~~~ 315 (317)
T 1wy5_A 293 -GGEVNLGKGKVL---KRKERWLCFSP 315 (317)
T ss_dssp -CCEEESSSEEEE---ETTEEBC----
T ss_pred -CCEEEcCCCEEE---EEECCEEEEEe
Confidence 457899887632 22344555544
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=2.9e-43 Score=384.77 Aligned_cols=293 Identities=20% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEE
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~ 158 (662)
+.++++|+||||||+|||||+++++++.... .| +++.|+|||||+|++|++|+++|+++|+++|||+++.+
T Consensus 10 l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-------~g--~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-------PG--VALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-------TT--CEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-------CC--CeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4678999999999999999999998875421 12 37899999999999899999999999999999999998
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-----ccccc
Q 006087 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-----QIFSS 233 (662)
Q Consensus 159 ~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-----~i~rP 233 (662)
+++. ....++|++||.+||++|.++|+ ++++|+||||+|||+||+|||+.||+|+.||+||++.+ .++||
T Consensus 81 ~~~~---~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~~~~~~iiRP 155 (433)
T 1ni5_A 81 VQLA---QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRP 155 (433)
T ss_dssp CCCC---CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEETTEEEECG
T ss_pred ecCC---CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCccccCCceEEcc
Confidence 7653 22357899999999999999996 49999999999999999999999999999999999864 47788
Q ss_pred cccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006087 234 YAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTRSYVEHVCSN 310 (662)
Q Consensus 234 lL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~l~~~~~~Le~~~~~ 310 (662)
++.+ +|.||+.||+++|++|++||||+++.|.||+||+.+.|.. +|.+...+.++++.++++.+++++.++.
T Consensus 156 Ll~~-----~k~eI~~y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~~~~~l~~~~~~ 230 (433)
T 1ni5_A 156 LLAR-----TRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLAD 230 (433)
T ss_dssp GGSC-----CHHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccC-----CHHHHHHHHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8754 5789999999999999999999999999999999988765 6899999999999999999999999888
Q ss_pred HHHhhhhhcCCceeEEeccccCCCChHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHcCCC--CCceeecceEEe
Q 006087 311 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPC--KTSLTAAGCYLC 388 (662)
Q Consensus 311 ll~~~v~~~~~g~~vid~~~l~~~~i~~~~~~r~L~~~l~~is~~~~~~R~~~l~~Ll~~lr~~~~--~~~~Tl~Gc~i~ 388 (662)
.+.+.+. ..+ .++...|.... ....++++...+...+. ..+....+..+++.+..... ...++++|+.+.
T Consensus 231 ~~~~~~~--~~~--~l~~~~l~~~~--~~~~~~~l~~~l~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 302 (433)
T 1ni5_A 231 DLAHCQS--PQG--TLQIVPMLAMS--DARRAAIIRRWLAGQNA--PMPSRDALVRIWQEVALAREDASPCLRLGAFEIR 302 (433)
T ss_dssp HHHHHBC--SSS--CEESGGGTTSC--HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHTTTSCGGGCCEEEETTEEEE
T ss_pred HHHHhhc--cCC--eEcHHHHhcCC--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCCCCceEEcCCEEEE
Confidence 7776643 223 46767665432 23344566655554332 34455556666665543221 236888998763
Q ss_pred cCCCCCCCeEEEEe
Q 006087 389 PTPGSRGTKALVCS 402 (662)
Q Consensus 389 ~~~~~~g~~vlV~~ 402 (662)
. .++.+++.+
T Consensus 303 ~----~~~~l~~~~ 312 (433)
T 1ni5_A 303 R----YQSQLWWIK 312 (433)
T ss_dssp E----SSSEEEEEE
T ss_pred E----ECCEEEEEE
Confidence 2 344555543
No 4
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=3.4e-26 Score=225.94 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=122.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
++|+||+|||+||+++++++++ .| .++.++|||||+++ |.++++++|+++||++++++++..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~---~g-----------~~v~~~~v~~~~~~----~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK---LG-----------YNPHLITINFGVIP----SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH---TT-----------EEEEEEEEECSSSC----TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred CeEEEEEECcHHHHHHHHHHHH---cC-----------CCeEEEEEeCCCch----HHHHHHHHHHHhCCCEEEEECCHH
Confidence 6899999999999999998864 22 26899999999986 567899999999999999987643
Q ss_pred cCC------CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccc--ccccccc
Q 006087 163 DGR------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFS--SQIFSSY 234 (662)
Q Consensus 163 ~~~------~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~--~~i~rPl 234 (662)
+.. ...+.....|...|+.+|.++|+ |+++|+||||+||++||+.+ .|+.+++.. ..++||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~--------~gl~~~~~~~~~~iirPL 138 (203)
T 3k32_A 69 IVEKAADMIIEHKYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSY--------SEIQSLEMRKNIQYITPL 138 (203)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCH--------HHHHHHHHHHTCEEECGG
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcch--------hhccCcccccCCeEEecc
Confidence 110 00111234566677888888887 99999999999999999654 244555432 2367888
Q ss_pred ccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchhH-HHHHHhhhh
Q 006087 235 AYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFVR-NRIRMSLGD 280 (662)
Q Consensus 235 L~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~R-NrIR~~L~~ 280 (662)
+.+ +|.||+.|++++ +.|++||||.++.+.+ ++||+.|.+
T Consensus 139 l~~-----~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~ 179 (203)
T 3k32_A 139 MGF-----GYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKE 179 (203)
T ss_dssp GGC-----CHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHH
T ss_pred CCC-----CHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHHHHhh
Confidence 754 578999999998 9999999999887765 888877765
No 5
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.90 E-value=1.4e-24 Score=242.70 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=133.7
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|++.+|+|..+|+. ..-.++..+.+++.+. +++|+||+|||+||+++++++++... .
T Consensus 198 ~nF~~~i~~~~~~w~~--~~~~~~~i~~i~~~v~------~~kvlvalSGGvDSsvla~ll~~~~G-------------~ 256 (527)
T 3tqi_A 198 AHFVIHICQCIPNWTT--KHIIEDSIRDIQEKVG------KEQVIVGLSGGVDSAVTATLVHKAIG-------------D 256 (527)
T ss_dssp HHHHHTTSCCCCCCCS--HHHHHHHHHHHHHHHT------TSCEEEECTTTHHHHHHHHHHHHHHG-------------G
T ss_pred hhhhhhcccccchhhH--HHHHHHHHHHHHHhcC------CCeEEEEEecCcCHHHHHHHHHHHhC-------------C
Confidence 5588889999999993 2224444445554443 37899999999999999999986422 2
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHH-HHHHHcCCeEEEEEcccccCCC--CCCCHHH---HHHHHHHHHHHHHHHHcCCccc
Q 006087 122 GLLAITVDHGLREESKEEANIVS-HRVSDMGIRCEIVRCDWLDGRP--KQGHLQE---AARDMRYRLFQKVCIQHQIGVL 195 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~-~~c~kLGIp~~i~~~~~~~~~~--~~~niE~---~AR~~RY~~L~e~A~e~G~d~L 195 (662)
++.++|||||++.. +|.+.+. .+|+++||++++++++..+... ...+.+. .++..||++|.++|++.|+++|
T Consensus 257 ~v~av~vd~g~~~~--~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~l 334 (527)
T 3tqi_A 257 QLVCVLVDTGLLRL--NEVDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWL 334 (527)
T ss_dssp GEEEEEECCSCSCT--THHHHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEE
T ss_pred eEEEEEeccCCCCh--hHHHHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEE
Confidence 68999999999842 3444454 5999999999999876543221 1224444 3456789999999999999999
Q ss_pred ccccccChhhHHHHHHhhccCCCc---Ccccccccc--ccccccccccccccCHHHHHHHHHhCCCCe---eeCCCCC
Q 006087 196 LIAHHADDQAELFILRLSRNSGVL---GLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDW---VEDPTNR 265 (662)
Q Consensus 196 atGHhaDDqaET~LmrL~RGsGi~---GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w---~eDpSN~ 265 (662)
++|||+||++||++||..++..+. ++.||+... .+++|++. +.|+||++|++++|+|| +.+|+..
T Consensus 335 a~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~-----l~K~EIr~~a~~lGlp~~~v~~~P~p~ 407 (527)
T 3tqi_A 335 GQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRE-----LFKDEVRKLGLELGLPADLIYRHPFPG 407 (527)
T ss_dssp ECCCCHHHHHCC--------------------------CEECTTTT-----CCHHHHHHHHHHHTCCHHHHTCCCCCT
T ss_pred EccccCCccccccccCCChhheeeeecccccCcccccCccccchhc-----CCHHHHHHHHHHcCCChhhhccCCCCC
Confidence 999999999999999854333343 466777543 36778775 46899999999999999 7888554
No 6
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.88 E-value=4.1e-23 Score=222.59 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=128.7
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC------cHHHHHHHHHHHHHcCCe
Q 006087 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE------SKEEANIVSHRVSDMGIR 153 (662)
Q Consensus 80 ~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e------S~~Ea~~V~~~c~kLGIp 153 (662)
.++++|+||+|||+||++++++|++ .|+ +++++|+||+.+.+ +.++.+.++++|+++|||
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~---~G~-----------~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp 80 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQ---QGY-----------QVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE 80 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHT---TCC-----------EEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHH---cCC-----------eEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCc
Confidence 4578999999999999999999864 232 79999999998742 567889999999999999
Q ss_pred EEEEEccccc-----------C-CCCCCCHHHHHHH-HHHHHHHHHHHH-cCCcccccccccChhhHHHHHHhhccCCCc
Q 006087 154 CEIVRCDWLD-----------G-RPKQGHLQEAARD-MRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (662)
Q Consensus 154 ~~i~~~~~~~-----------~-~~~~~niE~~AR~-~RY~~L~e~A~e-~G~d~LatGHhaDDqaET~LmrL~RGsGi~ 219 (662)
+++++++..+ + .....|.+..|+. +||+.|.++|.+ +|+++|+||||++|+.|+..+++.+|.+..
T Consensus 81 ~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~ 160 (380)
T 2der_A 81 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSN 160 (380)
T ss_dssp EEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccc
Confidence 9999986321 1 1123478877755 699999999998 999999999999999999999999998765
Q ss_pred C-----cccccccc--ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 220 G-----LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 220 G-----LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
+ |.+|+... .+++|+.. ++|.||++||+++|++|.+||+|.+..|.
T Consensus 161 kdqsy~L~~l~~~~l~~~i~PL~~-----~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~ 213 (380)
T 2der_A 161 KDQSYFLYTLSHEQIAQSLFPVGE-----LEKPQVRKIAEDLGLVTAKKKDSTGICFI 213 (380)
T ss_dssp TCCGGGGSSCCHHHHHHEECCGGG-----SCHHHHHHHHHHTTCC-------------
T ss_pred cccceeecCCChhhcceeEccCCC-----CCHHHHHHHHHHcCCCCccCCCCCCcccc
Confidence 5 67776432 35677764 46899999999999999999999998873
No 7
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.88 E-value=4.4e-23 Score=222.00 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=141.0
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC------CcHHHHHHHHHHHHHcCCeE
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE------ESKEEANIVSHRVSDMGIRC 154 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~------eS~~Ea~~V~~~c~kLGIp~ 154 (662)
++++|+||+|||+||+++++++++ .|+ ++.++|++|+.++ .+.++.+.++++|+++|||+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~---~G~-----------~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~ 73 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE---QGY-----------DVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPY 73 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH---cCC-----------cEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcE
Confidence 457999999999999999999875 232 7899999999874 25678899999999999999
Q ss_pred EEEEcccccC------------CCCCCCHHHHH-HHHHHHHHHHHHHHcCCcccccccccChhh-HHHHHHhhccCCCcC
Q 006087 155 EIVRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLG 220 (662)
Q Consensus 155 ~i~~~~~~~~------------~~~~~niE~~A-R~~RY~~L~e~A~e~G~d~LatGHhaDDqa-ET~LmrL~RGsGi~G 220 (662)
++++++..+. .....|.+..| |.+||.+|.++|+++|+++|+||||++|++ |+.++++.||.+..+
T Consensus 74 ~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~k 153 (376)
T 2hma_A 74 YSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGK 153 (376)
T ss_dssp EEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTT
T ss_pred EEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhcccccc
Confidence 9999864321 11234677766 778899999999999999999999999999 999999999987765
Q ss_pred -----cccccccc--ccccccccccccccCHHHHHHHHHhCCCCeeeCCCCCCCchh
Q 006087 221 -----LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDPTNRSPLFV 270 (662)
Q Consensus 221 -----LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDpSN~d~~y~ 270 (662)
|.+|+... .+++|+.. ++|.||++||+++|++|.++|++.+.+|.
T Consensus 154 dqsyfL~~l~~~~l~~~i~PL~~-----~~K~eVr~~A~~~gl~~~~k~~s~~~cf~ 205 (376)
T 2hma_A 154 DQTYFLSQLSQEQLQKTMFPLGH-----LEKPEVRRLAEEAGLSTAKKKDSTGICFI 205 (376)
T ss_dssp CCGGGGTTCCHHHHTTEECTTTT-----CCHHHHHHHHHHTTCTTTTCCCCCSCTTT
T ss_pred ccchhccCCChhhcCcEEecCcC-----CCHHHHHHHHHHcCCCcccCCCCCCcccc
Confidence 77776532 35667664 46899999999999999999999988774
No 8
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.85 E-value=2.7e-21 Score=214.98 Aligned_cols=184 Identities=18% Similarity=0.124 Sum_probs=127.5
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|+ .+|+|..+|+ ++.+.++..+.++.. + .+++|+||+|||+||+++++++++. |.
T Consensus 178 ~~F~-~~~~~~~~~~------~~~~~~~~i~~ir~~-~-~~~kvvvalSGGvDSsvla~ll~~~---g~----------- 234 (503)
T 2ywb_A 178 ENFL-ELAGVKRDWT------PEHVLEELLREVRER-A-GKDRVLLAVSGGVDSSTLALLLAKA---GV----------- 234 (503)
T ss_dssp HHHH-HHTTCCCCCC------HHHHHHHHHHHHHHH-H-TTSEEEEEECSSHHHHHHHHHHHHH---TC-----------
T ss_pred HHHH-HHhhhhcccc------chhhhHHHHHhhhhh-c-cCccEEEEecCCcchHHHHHHHHHc---CC-----------
Confidence 3466 7799999998 333333333333322 1 2379999999999999999999764 32
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCC--CCCCCHHH---HHHHHHHHHHHHHHHHc-CCccc
Q 006087 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQE---AARDMRYRLFQKVCIQH-QIGVL 195 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~--~~~~niE~---~AR~~RY~~L~e~A~e~-G~d~L 195 (662)
++.++|||||++.. +|.+.++++|+++||++++++.+..+.. ....+.+. .++..||+.|.++|+++ |+++|
T Consensus 235 ~v~av~vd~g~~~~--~e~~~v~~~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~l 312 (503)
T 2ywb_A 235 DHLAVFVDHGLLRL--GEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFL 312 (503)
T ss_dssp EEEEEEEECSCSCT--THHHHHHHHHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEE
T ss_pred eEEEEEEeCCCCCh--HHHHHHHHHHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEE
Confidence 78999999998632 4677899999999999999988753211 11123333 23446899999999999 99999
Q ss_pred ccccccChhhHHHHHHhhccCC----CcCcccccccc--ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 196 LIAHHADDQAELFILRLSRNSG----VLGLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 196 atGHhaDDqaET~LmrL~RGsG----i~GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
++|||+||++||.++ ++++ ..++.|++... .+++|+.. +.|+||++|++++|+||
T Consensus 313 a~G~~~~D~~Et~~~---g~~~~iks~~~l~~l~~~~~~~ii~PL~~-----l~K~EVr~~a~~~glp~ 373 (503)
T 2ywb_A 313 AQGTLYPDVIESAGG---HGAAKIKSHHNVGGLPEDLEFELLEPFRL-----LFKDEVRELALLLGLPD 373 (503)
T ss_dssp ECCCCHHHHHC--------------------CCCSSCCCEEECTTTT-----CCHHHHHHHHHHTTCCH
T ss_pred EECCcCccchhhccC---CcccccccccccccccccccCceEehhhc-----CCHHHHHHHHHHcCCCh
Confidence 999999999999765 2221 13466776543 36778765 45889999999999997
No 9
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.84 E-value=2.6e-21 Score=189.92 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=112.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++|+||+|||+||+++++++++. + .++.++|||||++.. +|.++++++|+++||+++++++++
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~---~-----------~~v~~~~~~~~~~~~--~e~~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE---F-----------EEVETVTFHYNQRHS--QEVEVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH---C-----------SEEEEEEEESSCTTC--HHHHHHHHHHHTTCCCEEEEECGG
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc---C-----------CceEEEEEeCCCCCH--HHHHHHHHHHHHhCCCeEEEeChH
Confidence 478999999999999999998652 2 168899999999864 678899999999999999998875
Q ss_pred ccC-------CC---------CCCCHHHHHHHHHH-HHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccc
Q 006087 162 LDG-------RP---------KQGHLQEAARDMRY-RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 162 ~~~-------~~---------~~~niE~~AR~~RY-~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM 224 (662)
... .+ ...+.+..||..|| .++.++|+++|+++|+||||+||++| ++..|++++.++.+|
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~---~~~~~~~~~~~l~~~ 143 (219)
T 3bl5_A 67 LNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSG---YPDCRDEFVKSCNVT 143 (219)
T ss_dssp GGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----C---CGGGSHHHHHHHHHH
T ss_pred HhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCC---CCCCCHHHHHHHHHH
Confidence 210 00 00111225899999 78899999999999999999999988 355555555566554
Q ss_pred cc-----ccccccccccccccccCHHHHHHHHHhCCCC
Q 006087 225 AF-----SSQIFSSYAYSCHDDLKNHSILLICQGGNRD 257 (662)
Q Consensus 225 ~~-----~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~ 257 (662)
.. ...+++|++. ++|.||+.|++++|+|
T Consensus 144 ~~~~~~~~~~ii~PL~~-----~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 144 VNLAMEKPFVIHTPLMW-----LNKAETWKLADELGAL 176 (219)
T ss_dssp HHHHHTSCCEEECTTTT-----CCHHHHHHHHHHTTCH
T ss_pred HHhccCCCeEEEecccc-----CCHHHHHHHHHHcCCC
Confidence 32 1236788875 4689999999999994
No 10
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.83 E-value=1.5e-20 Score=210.18 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=126.9
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|+..+|+|..+|+ ++.+.+...+.++.. +. +++++||+|||+||+++++++++... .
T Consensus 195 ~nF~~~i~~~~~~~~------~~~~~~~~~~~ir~~-v~-~~~vvvalSGGvDSsv~a~ll~~a~G-------------~ 253 (525)
T 1gpm_A 195 ERFVRDICQCEALWT------PAKIIDDAVARIREQ-VG-DDKVILGLSGGVDSSVTAMLLHRAIG-------------K 253 (525)
T ss_dssp HHHHHTTSCCCCCCC------HHHHHHHHHHHHHHH-HT-TCEEEEECCSSHHHHHHHHHHHHHHG-------------G
T ss_pred HHHHHhhhhccccch------HHHHHHhhhhhhhhh-hc-ccceEEEecCCCCHHHHHHHHHHHhC-------------C
Confidence 457788899999998 333333333333332 11 27999999999999999999876422 1
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHH-HHHHcCCeEEEEEcccccCC--CCCCCHHH---HHHHHHHHHHHHHHHHc-CCcc
Q 006087 122 GLLAITVDHGLREESKEEANIVSH-RVSDMGIRCEIVRCDWLDGR--PKQGHLQE---AARDMRYRLFQKVCIQH-QIGV 194 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~-~c~kLGIp~~i~~~~~~~~~--~~~~niE~---~AR~~RY~~L~e~A~e~-G~d~ 194 (662)
++.++|||||++... |.+.+.+ +|+++||++++++++..+.. ....+.+. .++..||++|.++|+++ |+++
T Consensus 254 ~v~av~v~~g~~~~~--e~~~~~~~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~ 331 (525)
T 1gpm_A 254 NLTCVFVDNGLLRLN--EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKW 331 (525)
T ss_dssp GEEEEEEECSCSCTT--HHHHHHHHHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred CEEEEEEeCCCCCch--HHHHHHHHHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCE
Confidence 689999999997543 4455655 89999999999988653211 11224443 45667899999999999 9999
Q ss_pred cccccccChhhHHHHHH-hhccCCC----cCcccccccc--ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 195 LLIAHHADDQAELFILR-LSRNSGV----LGLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 195 LatGHhaDDqaET~Lmr-L~RGsGi----~GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
|++|||+||++||+ + ..+|++. .+++||+... .+++|+.. +.|.||+++++++|+|+
T Consensus 332 l~~Gt~~~D~~E~~--~~~~~~s~~iks~~~l~gl~~~~~~~~i~PL~~-----l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 332 LAQGTIYPDVIESA--ASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKE-----LFKDEVRKIGLELGLPY 395 (525)
T ss_dssp EECCCCHHHHHHTT--C----------------------CCEEECTTTT-----CCHHHHHHHHHHTTCCH
T ss_pred EEeCCCCcchhhhc--CccccccccccccccccccccccCCcEEehhhc-----CCHHHHHHHHHHcCCCH
Confidence 99999999999995 3 3355543 2677887654 36777765 45789999999999996
No 11
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=215.72 Aligned_cols=199 Identities=13% Similarity=0.136 Sum_probs=144.4
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|++.+|+|..+|+ ++.+.+++.+.++.+. .+++++||+|||+||+++++|+++.. | +.
T Consensus 208 ~nFl~~i~~~~~~~~------~~~~~~~~i~~Ir~~v--~~~~vvv~lSGGvDSsVla~Ll~~al--G----------~~ 267 (697)
T 2vxo_A 208 KNFLYDIAGCSGTFT------VQNRELECIREIKERV--GTSKVLVLLSGGVDSTVCTALLNRAL--N----------QE 267 (697)
T ss_dssp HHHHTTTTCCCSCCC------HHHHHHHHHHHHHHHH--TTCEEEEECCSSHHHHHHHHHHHHHS--C----------GG
T ss_pred hhhhhccccccccch------hhHHHHHHHHHHHHHh--cccceEEEccCchHHHHHHHHHHHhc--C----------Cc
Confidence 457778899999998 3344444444443321 23799999999999999999987532 2 02
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCC----------------CCCC-----HHHHHHHH--
Q 006087 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP----------------KQGH-----LQEAARDM-- 178 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~----------------~~~n-----iE~~AR~~-- 178 (662)
++.++|||||++.+ .|.+.++++|+++||++++++++..+... ..++ .++.+|.+
T Consensus 268 ~V~aV~vd~g~~~~--~e~e~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig 345 (697)
T 2vxo_A 268 QVIAVHIDNGFMRK--RESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIG 345 (697)
T ss_dssp GEEEEEEECSCCCS--STTHHHHHHHHHTTCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHH
T ss_pred eEEEEEeccccCCc--chHHHHHHHHHHhCCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHHHhHHH
Confidence 68999999999743 34577899999999999999886432110 0011 24566765
Q ss_pred --HHHHHHHHHHHcCCc----ccccccccChhhHHHHHHhhccCCCc----Cccccccc----cccccccccccccccCH
Q 006087 179 --RYRLFQKVCIQHQIG----VLLIAHHADDQAELFILRLSRNSGVL----GLAGMAFS----SQIFSSYAYSCHDDLKN 244 (662)
Q Consensus 179 --RY~~L~e~A~e~G~d----~LatGHhaDDqaET~LmrL~RGsGi~----GLaGM~~~----~~i~rPlL~~~r~~i~k 244 (662)
+++++.++|++.|++ +|++|||++|++||+.+.+.+|++.. ++.|++.. ..+++|+.. +.|
T Consensus 346 ~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~-----L~K 420 (697)
T 2vxo_A 346 DTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD-----FHK 420 (697)
T ss_dssp HHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGG-----SCH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEeccc-----CCH
Confidence 667778888999988 99999999999999999988887653 45666532 236777765 458
Q ss_pred HHHHHHHHhCCCCe--eeCCCCCCC
Q 006087 245 HSILLICQGGNRDW--VEDPTNRSP 267 (662)
Q Consensus 245 ~eI~~ya~~~gI~w--~eDpSN~d~ 267 (662)
.||+++++++|+|| +..+...++
T Consensus 421 ~EVr~la~~lGlP~~i~~r~Ps~gp 445 (697)
T 2vxo_A 421 DEVRILGRELGLPEELVSRHPFPGP 445 (697)
T ss_dssp HHHHHHHHHTTCCHHHHTCCCCCTT
T ss_pred HHHHHHHHHcCCCcceeeCCCCCCC
Confidence 99999999999999 444444443
No 12
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.82 E-value=3.4e-20 Score=194.46 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
|+.|.+...+.++.. + .+++|+||+|||+||+++++++++... .++.++|||||++.. .|.+.
T Consensus 3 ~~~~~~~~~~~ir~~-v-~~~kvlvalSGGvDSsvla~ll~~~~g-------------~~v~av~vd~g~~~~--~e~~~ 65 (308)
T 2dpl_A 3 WGRFVEEKVREIRET-V-GDSKAIIALSGGVDSSTAAVLAHKAIG-------------DRLHAVFVNTGFLRK--GEPEF 65 (308)
T ss_dssp HHHHHHHHHHHHHHH-H-TTSCEEEECCSSHHHHHHHHHHHHHHG-------------GGEEEEEEECSCCCT--THHHH
T ss_pred HHHHHHHHHHHHHHH-h-CCCCEEEEEeChHHHHHHHHHHHHhhC-------------CCEEEEEEcCCCCCh--HHHHH
Confidence 444444444444432 1 147999999999999999999976421 268999999999643 34556
Q ss_pred HHH-HHHHcCCeEEEEEcccccCC--CCCCCHHH---HHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccC
Q 006087 143 VSH-RVSDMGIRCEIVRCDWLDGR--PKQGHLQE---AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (662)
Q Consensus 143 V~~-~c~kLGIp~~i~~~~~~~~~--~~~~niE~---~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGs 216 (662)
+++ +|+++||++++++++..+.. ....+.+. .++..||.+|.++|+++|+++|++|||+||++||..
T Consensus 66 ~~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~------- 138 (308)
T 2dpl_A 66 VVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG------- 138 (308)
T ss_dssp HHHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--------------
T ss_pred HHHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhcc-------
Confidence 777 55689999999988753211 11123433 356789999999999999999999999999999842
Q ss_pred CCcC---cccccccc--ccccccccccccccCHHHHHHHHHhCCCCe
Q 006087 217 GVLG---LAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRDW 258 (662)
Q Consensus 217 Gi~G---LaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w 258 (662)
|+.+ +.||+... .+++|++. +.|+||+.|++++|+||
T Consensus 139 ~iks~~~~~~l~~~~~~~virPL~~-----l~K~EI~~~a~~~glp~ 180 (308)
T 2dpl_A 139 KIKSHHNVGGLPEKLNLKLIEPLRD-----LYKDEVRELAKFLGLPE 180 (308)
T ss_dssp --------------CCCEEECTTTT-----CCHHHHHHHHHHTTCCH
T ss_pred chhhhhccccCCccCCCeEEEEccc-----CCHHHHHHHHHHhCCCc
Confidence 3333 33555432 36788775 45899999999999997
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.80 E-value=2.1e-19 Score=202.19 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=132.2
Q ss_pred chhhhhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcC
Q 006087 42 LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121 (662)
Q Consensus 42 ~~f~~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~ 121 (662)
.-|+..+|+|...|+ ++.+.++..+.++.. .++++|+||+|||+||+++++|+++... .
T Consensus 223 ~nFl~~i~g~~~~~~------~~~~~~~~i~~ir~~--g~~~~vvvalSGGvDSsv~a~ll~~~~G-------------~ 281 (556)
T 3uow_A 223 YNFAYNICKCKKQFD------PIRYHELELKNIEKY--KHDHYVIAAMSGGIDSTVAAAYTHKIFK-------------E 281 (556)
T ss_dssp HHHHTTTTCCCC-CC------HHHHHHHHHHHHGGG--TTTCEEEEECCSSHHHHHHHHHHHHHHG-------------G
T ss_pred HHHHHHhhccccccc------cccccccceeeeeec--CCCceEEEEcccCCCHHHHHHHHHHHhC-------------C
Confidence 457778899999999 455666666666665 4578999999999999999999976322 1
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCeEEEEEcccccCCC--CCCCHHHHHHHH----HHHHHHHHHHHcCC--
Q 006087 122 GLLAITVDHGLREESKEEANIVSHRVSDM-GIRCEIVRCDWLDGRP--KQGHLQEAARDM----RYRLFQKVCIQHQI-- 192 (662)
Q Consensus 122 ~L~AvhVDHGLR~eS~~Ea~~V~~~c~kL-GIp~~i~~~~~~~~~~--~~~niE~~AR~~----RY~~L~e~A~e~G~-- 192 (662)
+++++|||||++... +..+.++.+|+.+ ||++++++++..+... ...+.+ ..|.. ++..|.+.|++.|.
T Consensus 282 ~v~~v~vd~g~~~~~-e~~~~~~~~~~~l~gi~~~~vd~~~~f~~~l~g~~~pe-~kr~iig~~f~~vf~~~A~~~~~~~ 359 (556)
T 3uow_A 282 RFFGIFIDNGLLRKN-EAENVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPE-QKRKIIGKLFIEEFEKAVNNIDIDI 359 (556)
T ss_dssp GEEEEEEECSCSCTT-HHHHHHHHHHHHCTTSEEEEEECHHHHHHHTTTCCCHH-HHHHHHHHHHHHHHHHHHHTTCCCG
T ss_pred eEEEEEEecCCCChH-HHHHHHHHHHHhcCCCCeEEeccHHHHHHhhcCCCChH-HHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 689999999997432 3333346789999 9999999987543211 112333 33444 88999999999986
Q ss_pred --cccccccccChhhHHHHHHhhcc--CCCcCcccccccc--ccccccccccccccCHHHHHHHHHhCCCC---eeeCCC
Q 006087 193 --GVLLIAHHADDQAELFILRLSRN--SGVLGLAGMAFSS--QIFSSYAYSCHDDLKNHSILLICQGGNRD---WVEDPT 263 (662)
Q Consensus 193 --d~LatGHhaDDqaET~LmrL~RG--sGi~GLaGM~~~~--~i~rPlL~~~r~~i~k~eI~~ya~~~gI~---w~eDpS 263 (662)
++|++||++||++|++.++-... .....+.|++... .+++|+.. +.|.||+++++++|+| .+.-|+
T Consensus 360 ~~~~la~Gt~y~D~ies~~~~g~~~~iks~~n~~gl~~~~~~~li~PL~~-----l~K~EVr~la~~lGlp~~~~~r~P~ 434 (556)
T 3uow_A 360 NKTFLLQGTLYPDIIESKCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKY-----LFKDDVKTLSRELNLPEEITNRHPF 434 (556)
T ss_dssp GGEEEECCCCHHHHHHHSCC-------------------CCCEEECTTTT-----CCHHHHHHHHHTTTCCHHHHHCCCC
T ss_pred cccccccCccChHHHhhcccccccceecccccccccccccccceEeeccc-----CcHHHHHHHHHHcCCCHHHhCCCCC
Confidence 89999999999999975431000 0011245565433 25667654 5689999999999999 455554
Q ss_pred C
Q 006087 264 N 264 (662)
Q Consensus 264 N 264 (662)
.
T Consensus 435 p 435 (556)
T 3uow_A 435 P 435 (556)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.77 E-value=1.7e-19 Score=180.15 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=111.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~~ 161 (662)
++++|++|||+||+++++++.+. + .++.++|+|||.|. ..|.+.++++|+++||+ ++++++++
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~---~-----------~~v~av~~~~g~~~--~~e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD---Y-----------DDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---C-----------SEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCEEEEecCcHHHHHHHHHHHHc---C-----------CCEEEEEEECCCCC--HHHHHHHHHHHHHhCCCceEEEeChh
Confidence 58999999999999999988642 2 16889999999985 46788999999999999 99998772
Q ss_pred cc--C----------CCC----CC---CHHHHHHHHHHHHH-HHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCc
Q 006087 162 LD--G----------RPK----QG---HLQEAARDMRYRLF-QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (662)
Q Consensus 162 ~~--~----------~~~----~~---niE~~AR~~RY~~L-~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GL 221 (662)
.. . .+. .+ +.+..||..+|..+ .++|+++|+++|++|||+||++| ++..|+..+.|+
T Consensus 67 l~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~---~~~~r~~~~~~~ 143 (232)
T 2pg3_A 67 LNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSG---YPDCRDEFVKAL 143 (232)
T ss_dssp HHHTSHHHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSC---CGGGSHHHHHHH
T ss_pred HHHHhhhhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCC---CCCCCHHHHHHH
Confidence 11 0 000 01 22245799998877 89999999999999999999987 223333322333
Q ss_pred ccccc-----ccccccccccccccccCHHHHHHHHHhCCC-Ce
Q 006087 222 AGMAF-----SSQIFSSYAYSCHDDLKNHSILLICQGGNR-DW 258 (662)
Q Consensus 222 aGM~~-----~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI-~w 258 (662)
..+.. ...+++|++. ++|.||+.|++++|+ |+
T Consensus 144 ~~~~~~~~~~~~~i~~PL~~-----~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 144 NQAIVLGIARDIRFETPLMW-----LNKAETWALADYYQQLDT 181 (232)
T ss_dssp HHHHHHHHTSCCEEECTTTT-----CCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCCCCeEEEEecCC-----CCHHHHHHHHHHcCCCcc
Confidence 22211 1236778775 468999999999999 75
No 15
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.76 E-value=1.4e-18 Score=171.93 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=107.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++|+||+|||+||+|||+++.++. . ++.++|||||++ .+++.++++++|+++||++++...+.
T Consensus 44 ~~~v~Va~SGGkDS~vLL~ll~~~~---~-----------~v~~v~vd~g~~--~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQIR---P-----------DIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHS---T-----------TCEEEEEECSCB--CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhC---C-----------CCeEEEeeCCCC--CHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 4799999999999999999997642 1 568999999997 35678899999999999999987654
Q ss_pred cc-------CCCCCCC---HHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 162 LD-------GRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 162 ~~-------~~~~~~n---iE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
.. +..-..+ ....|...+...|.++++++|+++++||||+||..++..|+..+.. .| ..++
T Consensus 108 ~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~~~~~~~~~-----~~----~~~i 178 (215)
T 1sur_A 108 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQ-----RG----VFKV 178 (215)
T ss_dssp CHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTTTCCSEEEE-----TT----EEEE
T ss_pred CHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhcCCCccccC-----CC----EEEE
Confidence 21 0000001 1123455556678899999999999999999996654333322100 00 1256
Q ss_pred cccccccccccCHHHHHHHHHhCCCCee
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
+|++. ++++||..|++++|+||.
T Consensus 179 ~PLl~-----~t~~dI~~y~~~~~lp~~ 201 (215)
T 1sur_A 179 LPIID-----WDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp CTTTT-----CCHHHHHHHHHHHTCCCC
T ss_pred echHh-----CCHHHHHHHHHHhCCCCC
Confidence 78775 468999999999999994
No 16
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.75 E-value=3e-18 Score=186.31 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=118.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHc-----CCeEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-----GIRCEI 156 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kL-----GIp~~i 156 (662)
+++++||+|||+||+++++++.+ .| .++.|+|||++. -.+..+.+.++++|+.+ ||++++
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~---~G-----------~~v~av~v~~~~-~~~~~~~~~v~~~a~~l~~~~ggi~~~v 251 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK---RG-----------VSVEAVHFHSPP-FTSERAKQKVIDLAQELTKYCKRVTLHL 251 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH---BT-----------EEEEEEEEECTT-TSCHHHHHHHHHHHHHHGGGSSCEEEEE
T ss_pred CCeEEEEeCCCChHHHHHHHHHH---cC-----------CcEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 57899999999999999999864 23 278999999851 12466778889999999 999999
Q ss_pred EEcccccCC----CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccccccc
Q 006087 157 VRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 157 ~~~~~~~~~----~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~r 232 (662)
++++..... ......+..||..+|+++.++|+++|+++|+||||+||++||+++++..... ..++ .+++
T Consensus 252 v~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~---~~~~----~vir 324 (413)
T 2c5s_A 252 VPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINE---VTNY----PVIR 324 (413)
T ss_dssp EECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGG---GCCS----CEEC
T ss_pred EECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHhcccc---cCCC----EEEe
Confidence 987653210 1112366789999999999999999999999999999999998887753110 0111 2678
Q ss_pred ccccccccccCHHHHHHHHHhCCCCeee-CCCC
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNRDWVE-DPTN 264 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI~w~e-DpSN 264 (662)
|++. +.|.||+.+|++.|++.+. .|++
T Consensus 325 PL~~-----l~K~eI~~~a~~~Gl~~~~~~p~~ 352 (413)
T 2c5s_A 325 PLIT-----MDKLEIIKIAEEIGTYDISIRPYE 352 (413)
T ss_dssp TTTT-----CCHHHHHHHHHHTTCHHHHTSCC-
T ss_pred ccCC-----CCHHHHHHHHHHcCCCccccCCCC
Confidence 8875 4689999999999985443 3444
No 17
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.71 E-value=2.2e-17 Score=168.04 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH
Q 006087 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (662)
Q Consensus 61 i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea 140 (662)
++++++.+.+...+..+ ..++|+||+|||+||+++++++.+.... .++.++|++||.+ +|.
T Consensus 4 ~~~~~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~------------~~v~av~~~~~~~----~~~ 64 (257)
T 2e18_A 4 LDYDKVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGK------------EKVLGLIMPYFEN----KDV 64 (257)
T ss_dssp ECHHHHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECCSSCS----THH
T ss_pred CCHHHHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCC------------CcEEEEEeCCCCc----hHH
Confidence 45777788888888876 4678999999999999999998764310 2689999999964 567
Q ss_pred HHHHHHHHHcCCeEEEEEcccccC------CC--CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHh
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLDG------RP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~~------~~--~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL 212 (662)
+.++++|+.+|+++++++++.... .. ..-..+..++.+||.++.++|+++|+.+|+|||+.+|+
T Consensus 65 ~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~-------- 136 (257)
T 2e18_A 65 EDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFL-------- 136 (257)
T ss_dssp HHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHH--------
T ss_pred HHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHh--------
Confidence 789999999999999988764210 00 00124555556999999999999999999999998775
Q ss_pred hccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCCch
Q 006087 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSPLF 269 (662)
Q Consensus 213 ~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~~y 269 (662)
+|.+.. .| ....+++|+.. +.|.+|+.|++.+|+| ++++|.+.+..+
T Consensus 137 -~Gy~t~--~g--~~~~~i~Pl~~-----l~K~ev~~la~~~gip~~i~~~~ps~~l~~ 185 (257)
T 2e18_A 137 -TGYFTK--WG--DGASDYAPIIN-----LYKTEVWEIAKRIGVPERIVKKKPSAGLWE 185 (257)
T ss_dssp -HTCSCT--TS--TTCSSBCTTTT-----SCHHHHHHHHHHHTCCHHHHHSCCCCCSST
T ss_pred -cCCeec--cC--CCccCEeecCC-----CcHHHHHHHHHHcCCCHHHhCCCCCCCcCC
Confidence 232221 11 01125678765 4689999999999999 688999988765
No 18
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.71 E-value=2.3e-17 Score=179.06 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=112.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~ 161 (662)
++|+||+|||+||+++++++++.. + .+++++|||||+ + +|.++++++|+++|+ ++++++++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~--g-----------~~V~av~vd~g~-~---~e~e~a~~~A~~lGi~~~~vvd~~~ 63 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY--R-----------AEVIAFTADIGQ-G---EEVEEAREKALRTGASKAIALDLKE 63 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--T-----------CEEEEEEEESSC-S---SCHHHHHHHHHHHTCSEEEEEECHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh--C-----------CcEEEEEEeCCC-H---HHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 479999999999999999986521 2 268999999998 2 357789999999999 899988762
Q ss_pred cc--------CCC----C--CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC--hhhHHHHHHhhccCCCcCccccc
Q 006087 162 LD--------GRP----K--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--DQAELFILRLSRNSGVLGLAGMA 225 (662)
Q Consensus 162 ~~--------~~~----~--~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD--DqaET~LmrL~RGsGi~GLaGM~ 225 (662)
.+ ... . -..-...||..||..|.++|+++|+++|++|||+| ||+|+-+ |+.++.
T Consensus 64 ef~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~----------g~~~l~ 133 (400)
T 1kor_A 64 EFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFEL----------TAYALK 133 (400)
T ss_dssp HHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHH----------HHHHHC
T ss_pred HHHHHhhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHH----------HHHhcC
Confidence 11 000 0 00112248999999999999999999999999997 9999521 244554
Q ss_pred ccccccccccccccccc-CHHHHHHHHHhCCCCeeeCCCCC
Q 006087 226 FSSQIFSSYAYSCHDDL-KNHSILLICQGGNRDWVEDPTNR 265 (662)
Q Consensus 226 ~~~~i~rPlL~~~r~~i-~k~eI~~ya~~~gI~w~eDpSN~ 265 (662)
+...+++|+... .+ +|.+|+.|++++||||..++++.
T Consensus 134 p~l~ii~PL~~~---~~~tK~eI~~ya~~~gip~~~~~~~p 171 (400)
T 1kor_A 134 PDIKVIAPWREW---SFQGRKEMIAYAEAHGIPVPVTQEKP 171 (400)
T ss_dssp TTCEEECGGGTC---CCCSHHHHHHHHHHTTCCCC-----C
T ss_pred CCCEEEEeeccc---ccCCHHHHHHHHHHcCCCcccCCCCC
Confidence 444567887754 23 68999999999999999766543
No 19
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=178.75 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=116.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe-EEEEEcc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp-~~i~~~~ 160 (662)
+++|+||+|||+||+++++++++ .|. +++++|+|||.+ +|.+.++++|+++|++ +++++++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e---~G~-----------eV~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~ 66 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKE---QGY-----------DVIAYLANIGQK----EDFEEARKKALKLGAKKVFIEDVS 66 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHH---TTE-----------EEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred CCeEEEEEcChHHHHHHHHHHHH---cCC-----------EEEEEEEECCcH----HHHHHHHHHHHHhCCCEEEEEeCh
Confidence 57899999999999999999864 232 789999999986 3467899999999998 8888765
Q ss_pred cccC---------CC-C----CCCHHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCcccc
Q 006087 161 WLDG---------RP-K----QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 161 ~~~~---------~~-~----~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM 224 (662)
..+. .. . ...-...+|..||..|.++|++.|+++|++|||+ |||+|.. + |+.++
T Consensus 67 ~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~---l-------g~~~l 136 (413)
T 2nz2_A 67 REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFE---L-------SCYSL 136 (413)
T ss_dssp HHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHH---H-------HHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHH---H-------HHHhc
Confidence 2110 00 0 0001224899999999999999999999999999 8999832 2 12223
Q ss_pred ccccccccccccccc-ccc-CHHHHHHHHHhCCCCeeeCCCCCCCchhHHHHH
Q 006087 225 AFSSQIFSSYAYSCH-DDL-KNHSILLICQGGNRDWVEDPTNRSPLFVRNRIR 275 (662)
Q Consensus 225 ~~~~~i~rPlL~~~r-~~i-~k~eI~~ya~~~gI~w~eDpSN~d~~y~RNrIR 275 (662)
.+...+++|+..... ..+ +|++|+.||+++|+||.++|.+.. .+.+|.++
T Consensus 137 ~p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~~~~-S~d~n~~g 188 (413)
T 2nz2_A 137 APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPW-SMDENLMH 188 (413)
T ss_dssp CTTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCCCSS-CEEECSSC
T ss_pred CCCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCCCCC-CCChhhhh
Confidence 222235566651100 123 689999999999999998776642 34455543
No 20
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.70 E-value=4.1e-17 Score=179.20 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEE
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIV 157 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~ 157 (662)
+.+++||+||+|||+||+++++++++ .|+ +++++|+|||.+. .+|.+++++.|+++|| +++++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e---~G~-----------eViavtvd~Gq~~--~~ele~a~~~A~~lGi~~~~vv 70 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQ---KGA-----------VPYAYTANLGQPD--EEDYDAIPRRAMEYGAENARLI 70 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEECCCTT--CSCTTHHHHHHHHHTCSEEEEE
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHH---cCC-----------EEEEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEEE
Confidence 56789999999999999999999864 232 7999999999863 2467789999999999 89999
Q ss_pred EcccccCC--------------CC---CCCHHHHHHHHHHHHHHHHHHHcCCcccccccc--cChhhHHHHHHhhccCCC
Q 006087 158 RCDWLDGR--------------PK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGV 218 (662)
Q Consensus 158 ~~~~~~~~--------------~~---~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHh--aDDqaET~LmrL~RGsGi 218 (662)
+++..+.. .. .......||..+|.+|.++|++.|+++|++||| .|||+.- ++...+..
T Consensus 71 D~~eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf---~~~~~al~ 147 (455)
T 1k92_A 71 DCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERF---YRYGLLTN 147 (455)
T ss_dssp ECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHH---HHHHHHHC
T ss_pred eChHHHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHH---HHHHHhcC
Confidence 87532110 00 123456789999999999999999999999997 5899752 21110101
Q ss_pred cCccccccccccccccccc--cccccCHHHHHHHHHhCCCCeee
Q 006087 219 LGLAGMAFSSQIFSSYAYS--CHDDLKNHSILLICQGGNRDWVE 260 (662)
Q Consensus 219 ~GLaGM~~~~~i~rPlL~~--~r~~i~k~eI~~ya~~~gI~w~e 260 (662)
.++.. +.|+..+ ....++|+||+.||+++||||..
T Consensus 148 p~l~v-------iaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 148 AELQI-------YKPWLDTDFIDELGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp TTCEE-------ECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCC
T ss_pred CCCEE-------ECeeccccccccCCCHHHHHHHHHHcCCCccc
Confidence 12333 3444331 00125799999999999999974
No 21
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.67 E-value=1.3e-16 Score=162.95 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH
Q 006087 62 DMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea 140 (662)
+.+++.+.+...+..+. -...++|+||+|||+||+++++++++.. | .++.++|++|+.+. .++.
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~--g-----------~~v~av~~~~~~~~--~~~~ 69 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRAL--K-----------ENVFALLMPTQISN--KANL 69 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHH--T-----------TSEEEEECCSCCSS--CHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHc--C-----------CcEEEEEecCCCCC--HHHH
Confidence 44555555444444331 1224789999999999999999987642 2 16899999999763 3566
Q ss_pred HHHHHHHHHcCCeEEEEEccccc---CC----CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH-HHh
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLD---GR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI-LRL 212 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~---~~----~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L-mrL 212 (662)
+.++++|+.+||++++++++... .. +...+.+..|+++||.++..+|+++|+.+|.|||.. |+++ +..
T Consensus 70 ~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~s----e~~~g~~t 145 (249)
T 3p52_A 70 EDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKS----ELLLGYGT 145 (249)
T ss_dssp HHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH----HHHHTCSC
T ss_pred HHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCHH----HHHccchh
Confidence 78899999999999998775321 11 111246788899999999999999999999998753 3322 111
Q ss_pred hccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCCch
Q 006087 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSPLF 269 (662)
Q Consensus 213 ~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~~y 269 (662)
..|.+. ..++|+.. +.|.||+++|+..|+| +++.|++.+...
T Consensus 146 ~~gd~~----------~~i~PL~~-----l~K~eV~~la~~~gip~~i~~k~psa~L~~ 189 (249)
T 3p52_A 146 IYGDLA----------CAFNPIGS-----LYKSEIYALAKYLNLHENFIKKAPSADLWE 189 (249)
T ss_dssp TTTTTC----------CSEETTTT-----SCHHHHHHHHHHTTCCHHHHHC--------
T ss_pred hhcccc----------CccccccC-----CcHHHHHHHHHHcCCcHHhcCCCCCcccCC
Confidence 122211 24677754 5689999999999999 899999998664
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.66 E-value=5.2e-16 Score=159.03 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH
Q 006087 62 DMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea 140 (662)
+.+++.+.+...+..+. ....++|+||+|||+||+++++++.+... .++.++|++|+.. +.+|.
T Consensus 4 ~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~-------------~~v~av~~~~~~~--~~~e~ 68 (268)
T 1xng_A 4 DYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFK-------------ENAHALLMPSSVS--MPENK 68 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHG-------------GGEEEEECCCSSS--CHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCC-------------CCEEEEEeCCCCC--CHHHH
Confidence 34455555554444331 12356899999999999999999876431 1689999999974 57788
Q ss_pred HHHHHHHHHcCCeEEEEEccccc------CCCC-CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhh
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLD------GRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~------~~~~-~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~ 213 (662)
+.++++|+.+||++++++++... .... ....+..++.+||.+|.++|+++|+.+|+|||. .|++
T Consensus 69 ~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~----~E~~----- 139 (268)
T 1xng_A 69 TDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SERM----- 139 (268)
T ss_dssp HHHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHHH-----
T ss_pred HHHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH----HHHh-----
Confidence 99999999999999998775421 0000 012566778899999999999999999999984 4554
Q ss_pred ccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCCch
Q 006087 214 RNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSPLF 269 (662)
Q Consensus 214 RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~~y 269 (662)
.|-+.. .|- ...+++|+.. +.|.+|+.|++..|+| ++++|.+.+..+
T Consensus 140 ~Gy~t~--~gd--~~~~i~PL~~-----l~K~ev~~la~~~gip~~i~~k~psa~l~~ 188 (268)
T 1xng_A 140 LGYGTL--FGD--LACAINPIGE-----LFKTEVYELARRLNIPKKILNKPPSADLFV 188 (268)
T ss_dssp HTCSCT--TTT--TCCSEETTTT-----SCHHHHHHHHHHTTCCHHHHTSCCCCCSST
T ss_pred cCcccc--cCC--CCeeEEecCC-----CCHHHHHHHHHHcCCcHHHhcCCCCcCcCC
Confidence 232211 111 1125678765 4588999999999999 788999888765
No 23
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.63 E-value=1.4e-15 Score=160.69 Aligned_cols=159 Identities=13% Similarity=-0.051 Sum_probs=110.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
++++||+|||+||+|||+|+.++.... + ..+.++|||||++ .+++.+++.++|+++||++++...+..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~--------~--~~i~vv~vDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~~ 114 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG--------K--LPFPVMHVDTRWK--FQEMYRFRDQMVEEMGLDLITHINPDG 114 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS--------C--CSSCEEEECCSCC--CHHHHHHHHHHHHTTTCCEEEECC---
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc--------C--CCEEEEEEECCCC--CHHHHHHHHHHHHHcCCCEEEEeCchH
Confidence 589999999999999999998764321 1 1456899999997 357889999999999999999876542
Q ss_pred cCCC---CCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhc--cCCCcCccccccc----------
Q 006087 163 DGRP---KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR--NSGVLGLAGMAFS---------- 227 (662)
Q Consensus 163 ~~~~---~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~R--GsGi~GLaGM~~~---------- 227 (662)
.... ...+....|...+...|.++++++|++++++||++||......|++.+ |+ +.++.+.
T Consensus 115 ~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~~----~~~~d~~~~rp~l~~~~ 190 (325)
T 1zun_A 115 VAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDS----KHRWDPKNQRPELWNVY 190 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECT----TCCBCGGGCCCCCSSCC
T ss_pred HhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceecccc----ccccCccccCcchhhhc
Confidence 1100 001112345666678899999999999999999999876554555543 32 2222221
Q ss_pred --------cccccccccccccccCHHHHHHHHHhCCCCeeeCC
Q 006087 228 --------SQIFSSYAYSCHDDLKNHSILLICQGGNRDWVEDP 262 (662)
Q Consensus 228 --------~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~eDp 262 (662)
...++|++. +++.+|..|++++||||...-
T Consensus 191 n~~~~~g~~~~i~PLl~-----wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 191 NGNVNKGESIRVFPLSN-----WTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp CCCCCTTCEEEECTTTT-----CCHHHHHHHHHHHTCCCCSCC
T ss_pred cccccCCCeEEEEchhh-----CCHHHHHHHHHHhCCCcchhh
Confidence 112466654 578999999999999995433
No 24
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.62 E-value=9.5e-16 Score=156.03 Aligned_cols=148 Identities=9% Similarity=-0.011 Sum_probs=106.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++|+||+|||+||+||++++.+.. . ++.++|+|||++ .+++.++++++|+++||+++++..+.
T Consensus 45 ~~~v~va~SGG~DS~vLL~ll~~~~---~-----------~v~vv~idtg~~--~~et~~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQIR---P-----------DIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp CSCEEEECCCSTTHHHHHHHHHHHS---T-----------TCEEEECCCSCB--CHHHHHHHHHHHHHTTCEEEECCCSS
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHhC---C-----------CCeEEEecCCCC--CHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 4689999999999999999997642 1 467999999996 35678899999999999999886553
Q ss_pred ccC---CCCC----CCH---HHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCccccccccccc
Q 006087 162 LDG---RPKQ----GHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (662)
Q Consensus 162 ~~~---~~~~----~ni---E~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~ 231 (662)
... .... .+. ...|...+...|.+++++.|+++++|||++||..++..|+.... ......+
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R~~l~~~~~---------~~~~~~i 179 (252)
T 2o8v_A 109 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAI---------QRGVFKV 179 (252)
T ss_dssp CHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCCTTSCSEEE---------SSSSEEE
T ss_pred CHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccccccCceeec---------CCCeEEE
Confidence 210 0000 011 22445555667888999999999999999999765433332210 0001246
Q ss_pred cccccccccccCHHHHHHHHHhCCCCee
Q 006087 232 SSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 232 rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
+|++. +++++|..|++++|+||.
T Consensus 180 ~PL~~-----wt~~dV~~y~~~~~lp~~ 202 (252)
T 2o8v_A 180 LPIID-----WDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp CGGGS-----CCHHHHHHHHHHTTCCCC
T ss_pred echhh-----CCHHHHHHHHHHcCCCCC
Confidence 77765 568999999999999984
No 25
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.61 E-value=3.2e-15 Score=152.44 Aligned_cols=175 Identities=12% Similarity=0.087 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHH
Q 006087 61 TDMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (662)
Q Consensus 61 i~~~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~E 139 (662)
++++++.+++...+..+. -...++|+||+|||+||+++++++++. +. +.+++|++++. .+..|
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~---~~-----------~~~av~~~~~~--~~~~~ 70 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKT---GL-----------PTTALILPSDN--NQHQD 70 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHT---TS-----------CEEEEECCCTT--SCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHh---CC-----------CCEEEEecCCC--CCHHH
Confidence 456666666655555432 233478999999999999999998752 11 23499999985 35678
Q ss_pred HHHHHHHHHHcCCeEEEEEcccccC------C---CCCCCHHHHH-----HHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 140 ANIVSHRVSDMGIRCEIVRCDWLDG------R---PKQGHLQEAA-----RDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 140 a~~V~~~c~kLGIp~~i~~~~~~~~------~---~~~~niE~~A-----R~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
.+.++++|+.+||++++++++.... . +.....+..| +++|+..+..+|+++|+.+|+|||..
T Consensus 71 ~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~s---- 146 (249)
T 3fiu_A 71 MQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNAC---- 146 (249)
T ss_dssp HHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHH----
T ss_pred HHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCHH----
Confidence 8899999999999999988753210 0 1001222333 88999999999999999999999753
Q ss_pred HHHHHHhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCCch
Q 006087 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSPLF 269 (662)
Q Consensus 206 ET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~~y 269 (662)
|++. | ...+.|-. ...++|+.. +.|.+|+.+|+..|+| +++.|.+.+..+
T Consensus 147 E~~~-----G--~~t~~gd~--~~~i~PL~~-----l~K~eVr~lA~~lglp~~i~~k~psa~L~~ 198 (249)
T 3fiu_A 147 EWYM-----G--YFTKFGDG--AADILPLVN-----LKKSQVFELGKYLDVPKNILDKAPSAGLWQ 198 (249)
T ss_dssp HHHH-----T--CSCTTTTT--CCSBCTTTT-----CCHHHHHHHHHHTTCCHHHHHSCCCCCSST
T ss_pred HHhc-----C--chhccCCC--Ccceeeccc-----CcHHHHHHHHHHcCCcHHHccCCCCCccCC
Confidence 5542 1 11111110 125677764 5689999999999999 999999999876
No 26
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=141.32 Aligned_cols=150 Identities=6% Similarity=-0.053 Sum_probs=101.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC----eEEEEE
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI----RCEIVR 158 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI----p~~i~~ 158 (662)
++|+||+|||+||+|||+++.+.... ..++.++|+|+|++ .++..++++++|+++|+ ++++..
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-----------~~~i~vv~iDtg~~--~~et~~~v~~~~~~~gl~~~~~l~v~~ 108 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-----------YYMPELLFIDTLHH--FPQTLTLKNEIEKKYYQPKNQTIHVYK 108 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-----------SCCCEEEEECCSCB--CHHHHHHHHHHHHHHTGGGTCCCEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-----------CCCeeEEEecCCCC--CHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 37999999999999999999865321 01467899999997 35678899999999999 998876
Q ss_pred cccc----cC-CCCCCCHHH-----HHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhccCCCcCcccccccc
Q 006087 159 CDWL----DG-RPKQGHLQE-----AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS 228 (662)
Q Consensus 159 ~~~~----~~-~~~~~niE~-----~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~ 228 (662)
.+.. .. .....++.. .|...+-..|.++++++|++.+++||++||... |. ++. ...+.+..
T Consensus 109 ~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~-------R~-~~~-~~~~~~~~ 179 (261)
T 2oq2_A 109 PDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSA-------RS-QLS-IIEIDELN 179 (261)
T ss_dssp STTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGG-------GG-GCC-SEEEETTT
T ss_pred cCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHH-------Hc-cCC-ceeecCCC
Confidence 5410 00 000112222 233333456778899999999999999999633 21 111 11111111
Q ss_pred c--cccccccccccccCHHHHHHHHHhCCCCee
Q 006087 229 Q--IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 229 ~--i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
+ .++|++. +++.+|..|++++||||.
T Consensus 180 ~~~ki~PL~~-----wt~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 180 GILKINPLIN-----WTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp TEEEECTTTT-----CCHHHHHHHHHHHTCCCC
T ss_pred CeEEEechHh-----CCHHHHHHHHHHcCCCCC
Confidence 1 2567765 568999999999999985
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.46 E-value=1.8e-13 Score=149.17 Aligned_cols=151 Identities=10% Similarity=0.061 Sum_probs=105.9
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~ 160 (662)
.+||+||+|||+||+++++++++ +|+ +++++|+|.|.+ +|.+.+++.|+++|| +++++++.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke---~G~-----------eViavt~d~Gq~----~Ele~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE---KGF-----------DVIAYVANVGQK----DDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH---CCC-----------eEEEEEEEcCCH----HHHHHHHHHHHHcCCceEEEEecH
Confidence 47899999999999999998864 343 799999999985 346678999999999 99999886
Q ss_pred cccC--------CCC------CCCHHHHHHHHHHHHHHHHHHHcCCccccccccc--ChhhHHHHHHhhccCCCcCcccc
Q 006087 161 WLDG--------RPK------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (662)
Q Consensus 161 ~~~~--------~~~------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha--DDqaET~LmrL~RGsGi~GLaGM 224 (662)
..+. ... .......||..-+..+.++|++.|+++|++|||+ +||..--+. ++ ++
T Consensus 76 eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~--~~--------al 145 (421)
T 1vl2_A 76 REFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELT--YA--------AL 145 (421)
T ss_dssp HHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHH--HH--------HH
T ss_pred HHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHH--HH--------hc
Confidence 3221 110 1122334788888999999999999999999997 677531110 01 11
Q ss_pred cccccccccccc--ccccccCHHHHHHHHHhCCCCeee
Q 006087 225 AFSSQIFSSYAY--SCHDDLKNHSILLICQGGNRDWVE 260 (662)
Q Consensus 225 ~~~~~i~rPlL~--~~r~~i~k~eI~~ya~~~gI~w~e 260 (662)
.+...++.|+.. .....++|.||++||+++|+|+..
T Consensus 146 ~p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 146 NPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp CTTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred CCCCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 111234556554 110115789999999999999875
No 28
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.28 E-value=4.1e-12 Score=130.94 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=99.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
+++|+||+| |+||+|||+++.+. +. ++.++|+|+|++ .++..++++++|+++||++++...+.
T Consensus 54 g~~i~Va~S-GkDS~vLL~Ll~~~---~~-----------~i~vv~iDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 54 GDELWISFS-GAEDVVLVDMAWKL---NR-----------NVKVFSLDTGRL--HPETYRFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp STTEEEECC-SSTTHHHHHHHHHH---CT-----------TCCEEEECCSCC--CHHHHHHHHHHHHHHTCCCEEECCCH
T ss_pred CCCEEEEee-cHHHHHHHHHHHHh---CC-----------CceEEEEeCCCC--CHHHHHHHHHHHHHHCCeEEEEeCCc
Confidence 378999999 99999999999764 21 456899999996 46678899999999999999886542
Q ss_pred cc----CCC-CCC-----CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh-HHHHHHhhccCCCcCccccc-cccc
Q 006087 162 LD----GRP-KQG-----HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLGLAGMA-FSSQ 229 (662)
Q Consensus 162 ~~----~~~-~~~-----niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa-ET~LmrL~RGsGi~GLaGM~-~~~~ 229 (662)
.. ... ... +....|+..+..-|.++.+ +++.+++||++||.. ....|+..+... ++. +. ....
T Consensus 117 ~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~~R~~~~~~~~d~--~~~-~~~~g~~ 191 (275)
T 2goy_A 117 RLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGTRSQVAVLEIDG--AFS-TPEKPLY 191 (275)
T ss_dssp HHHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTSCSCCCCSEEECT--TTC-CSSSCCE
T ss_pred cCHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhhhhhhCccccccc--ccc-cCCCCeE
Confidence 10 000 000 1233455555556666665 567899999999963 212222222111 000 00 0011
Q ss_pred cccccccccccccCHHHHHHHHHhCCCCee
Q 006087 230 IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 230 i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
.++|++. +++++|..|++++|+||.
T Consensus 192 ~i~PL~~-----wt~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 192 KFNPLSS-----MTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp EECTTTT-----CCHHHHHHHHHHTTCCCC
T ss_pred EEechHh-----CCHHHHHHHHHHhCCCCC
Confidence 4677765 568999999999999983
No 29
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.19 E-value=1.3e-10 Score=120.05 Aligned_cols=189 Identities=11% Similarity=0.028 Sum_probs=111.6
Q ss_pred hccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhC-CCCCCCCCCCCcCcEEEEE
Q 006087 49 CKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAIT 127 (662)
Q Consensus 49 c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~-g~~~~~~~~g~~~~L~Avh 127 (662)
.++...|+.. .........+...+...+. .++++||+|||+||++++.|++..... |... . ..+ .++++++
T Consensus 11 ~~~~~~~~~~--~~i~~~~~~L~~~l~~~g~--~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~-~-~~~--~~v~av~ 82 (275)
T 1wxi_A 11 LGAKPQINAE--EEIRRSVDFLKSYLQTYPF--IKSLVLGISGGQDSTLAGKLCQMAINELRLET-G-NES--LQFIAVR 82 (275)
T ss_dssp HTCCSCCCHH--HHHHHHHHHHHHHHHHSTT--CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHH-C-CTT--CEEEEEE
T ss_pred hCCCCCCCHH--HHHHHHHHHHHHHHHHcCC--CCCEEEECcCcHHHHHHHHHHHHHHHHhcccc-c-ccc--ceEEEEE
Confidence 4566666522 2223344445555555441 258999999999999999888764310 0000 0 001 1688999
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEccccc----------CCCCCC-CHHHHHHHHHHHHHHHHHHHcCCccc
Q 006087 128 VDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLD----------GRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195 (662)
Q Consensus 128 VDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~~----------~~~~~~-niE~~AR~~RY~~L~e~A~e~G~d~L 195 (662)
++|+.+. +.+.++++|+.+|| +|++++++... +.+... ..+....+.|...+..+|.+.|+.+|
T Consensus 83 ~~~~~~~----~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl 158 (275)
T 1wxi_A 83 LPYGVQA----DEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVV 158 (275)
T ss_dssp CCSSSCT----THHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEB
T ss_pred eCCCCcc----CHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEE
Confidence 9987542 34557888999999 99988765321 001000 12333335688889999999999999
Q ss_pred ccccccChhhHHHHHHhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCC
Q 006087 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSP 267 (662)
Q Consensus 196 atGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~ 267 (662)
.|||..++. .|-. -..|- ....+.|+. ++.|.+|+.+++..|+| .++-|...+.
T Consensus 159 gTgn~~E~~---------~Gy~--t~~gd--~~~~~~PL~-----~l~K~eVr~la~~lglp~~i~~k~psa~L 214 (275)
T 1wxi_A 159 GTDHAAEAI---------TGFF--TKYGD--GGTDINPLY-----RLNKRQGKQLLAALACPEHLYKKAPTADL 214 (275)
T ss_dssp CCCCHHHHT---------TTCS--CTTTT--TCCSBCTTT-----TCCHHHHHHHHHHTTCCGGGTSCC-----
T ss_pred ECccHHHHc---------cCcc--cccCC--Cccceeecc-----CCCHHHHHHHHHHhCCcHhhccCCCCCcc
Confidence 999875541 2211 11110 012345554 45689999999999998 4555555553
No 30
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.17 E-value=2.7e-11 Score=127.03 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=87.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHc-------CCeE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-------GIRC 154 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kL-------GIp~ 154 (662)
.++++|++|| .||+++++++.+ +|+ ++.++|+|++. .+.+.++++|+.+ +||+
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~---~G~-----------~v~~v~~~~~~-----~~~~~a~~~a~~l~~~~~~~~i~~ 238 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMK---RGV-----------EVIPVYIGKDD-----KNLEKVRSLWNLLKRYSYGSKGFL 238 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHH---BTC-----------EEEEEEESCSS-----HHHHHHHHHHHHHHTTCTTSCCCC
T ss_pred CCcEEEEEeC-CcHHHHHHHHHh---CCC-----------eEEEEEEEECH-----HHHHHHHHHHHHHhhhccCCCCcE
Confidence 4699999999 999999998863 443 78999999543 3466788888888 8999
Q ss_pred EEEE-cccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh-HHHHHHhhccCCCcCcccccccccccc
Q 006087 155 EIVR-CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLGLAGMAFSSQIFS 232 (662)
Q Consensus 155 ~i~~-~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa-ET~LmrL~RGsGi~GLaGM~~~~~i~r 232 (662)
++++ +... . ++|.+.|+++|+||||++|.+ +|..|+..... .. ..+++
T Consensus 239 ~vv~~~~~~---------~------------~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~~~~-----~~----~~vl~ 288 (307)
T 1vbk_A 239 VVAESFDRV---------L------------KLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKM-----FP----VPVYY 288 (307)
T ss_dssp EEESSHHHH---------H------------HHHHHHTCCEEECCCCGGGCCTTCHHHHHHHHH-----CS----SCEEC
T ss_pred EEeCCCHHH---------H------------HHHHHcCCCEEEECcccchhccccHHHhhhccC-----cC----CeEEE
Confidence 8875 3211 1 788999999999999998764 45444332211 11 12567
Q ss_pred ccccccccccCHHHHHHHHHhCCC
Q 006087 233 SYAYSCHDDLKNHSILLICQGGNR 256 (662)
Q Consensus 233 PlL~~~r~~i~k~eI~~ya~~~gI 256 (662)
|++. ++|.||+.+|++.|+
T Consensus 289 PL~~-----~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 289 PLIA-----LPEEYIKSVKERLGL 307 (307)
T ss_dssp HHHH-----SCHHHHHHHHHHHTC
T ss_pred ccCC-----CCHHHHHHHHHHcCC
Confidence 7764 468899999998874
No 31
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.2e-10 Score=118.79 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=94.7
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCC------CC-CCCCC-CCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGF------NQ-NGEAG-EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR 153 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~------~~-~~~~~-g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp 153 (662)
+++|+||+|||+||+|||+|+.+...... .. ..... ....++.++|+|.|. +.++..+++.++++++|++
T Consensus 53 ~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~--~fpet~~fv~~~~~~ygl~ 130 (306)
T 2wsi_A 53 NGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE--TFPTLENFVLETSERYCLS 130 (306)
T ss_dssp SSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT--CCHHHHHHHHHHHHHTTEE
T ss_pred cCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC--CCHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999876421100 00 00000 001257899999986 5788899999999999999
Q ss_pred EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCcccccccccChhhHHHHHHhhccCCCcCcccccccc-c--
Q 006087 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS-Q-- 229 (662)
Q Consensus 154 ~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e-~G~d~LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~-~-- 229 (662)
+++...++.. ...+.+. +.++++. -+.+.|++||+.||.. .| ++..+.... +
T Consensus 131 l~v~~~~~~~----~~~l~~~--------~~~~~k~~p~~~aii~G~Rrdds~-------~r-----~l~~~~~~d~~~p 186 (306)
T 2wsi_A 131 LYESQRQSGA----SVNMADA--------FRDFIKIYPETEAIVIGIRHTDPF-------GE-----ALKPIQRTDSNWP 186 (306)
T ss_dssp EEECCC---------CCHHHH--------HHHHHHHCTTCCEEECCCCCCSSS-------CC-----CCCSEEECCTTSC
T ss_pred EEEEeCCccc----cccHHHH--------HHHHHhhCCCCcEEEEEEeccccc-------cc-----ccCceeccCCCCC
Confidence 9877654321 1234433 3344555 3788999999999954 11 222222111 0
Q ss_pred ---cccccccccccccCHHHHHHHHHhCCCCee
Q 006087 230 ---IFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 230 ---i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
.+.|++. +++.||..|+..++|||.
T Consensus 187 ~~~ri~PL~d-----Wt~~DVw~Yi~~~~lpy~ 214 (306)
T 2wsi_A 187 DFMRLQPLLH-----WDLTNIWSFLLYSNEPIC 214 (306)
T ss_dssp SCEEECTTTT-----CCHHHHHHHHHHHCCCBC
T ss_pred CcEEEeChHH-----CCHHHHHHHHHHcCCCCC
Confidence 1456554 678999999999999993
No 32
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.16 E-value=1.8e-10 Score=118.66 Aligned_cols=186 Identities=12% Similarity=0.025 Sum_probs=114.2
Q ss_pred hccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhC-CCCCCCCCCCCcCcEEEEE
Q 006087 49 CKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAIT 127 (662)
Q Consensus 49 c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~-g~~~~~~~~g~~~~L~Avh 127 (662)
.++...|+. ....+.+...+...+...+. .+|+||+|||+||+++++|++..... |.. .+ ..++++++
T Consensus 10 ~~~~~~~~~--~~~i~~~~~~L~d~v~~~g~---~~vvvgLSGGvDSsv~a~La~~a~~~lg~~-----~~-~~~v~av~ 78 (271)
T 1kqp_A 10 LHVKPSIDP--KQEIEDRVNFLKQYVKKTGA---KGFVLGISGGQDSTLAGRLAQLAVESIREE-----GG-DAQFIAVR 78 (271)
T ss_dssp HTCCSSCCH--HHHHHHHHHHHHHHHHHHTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHHT-----TC-CCEEEEEE
T ss_pred hCCCCCCCH--HHHHHHHHHHHHHHHHHcCC---CCEEEECCCCHHHHHHHHHHHHHHHHhccc-----CC-CceEEEEE
Confidence 466667762 22233345555566655543 58999999999999999888754310 000 00 01688999
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEccccc-----------CCCCCC-CHHHHHHHHHHHHHHHHHHHcCCcc
Q 006087 128 VDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLD-----------GRPKQG-HLQEAARDMRYRLFQKVCIQHQIGV 194 (662)
Q Consensus 128 VDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~~-----------~~~~~~-niE~~AR~~RY~~L~e~A~e~G~d~ 194 (662)
++++.+. +.+.++++|+.+|+ +|++++++... ..+... ..+....+.|...+..+|.++|+.+
T Consensus 79 ~~~~~~~----d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lv 154 (271)
T 1kqp_A 79 LPHGTQQ----DEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLV 154 (271)
T ss_dssp CCSSSCT----THHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred eCCCCCC----CHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCEE
Confidence 9987542 34567888999999 99988765321 111100 1222323478888899999999999
Q ss_pred cccccccChhhHHHHHHhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eeeCCCCCCC
Q 006087 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVEDPTNRSP 267 (662)
Q Consensus 195 LatGHhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~eDpSN~d~ 267 (662)
+.|||..++ ..|-. -..|- ....+.|+. ++.|.+|+.+++..|+| .++-|...+.
T Consensus 155 l~tgn~~E~---------~~Gy~--t~~gd--~~~~~~Pl~-----~l~K~eVr~la~~lglp~~i~~k~psa~L 211 (271)
T 1kqp_A 155 LGTDHAAEA---------VTGFF--TKYGD--GGADLLPLT-----GLTKRQGRTLLKELGAPERLYLKEPTADL 211 (271)
T ss_dssp BCCCCHHHH---------TTTCS--CTTTT--TCCSBCTTT-----TCCHHHHHHHHHHTTCCTHHHHSCCBCCC
T ss_pred EECccHHHh---------ccCCc--ccccc--ccccccccc-----cCCHHHHHHHHHHcCCCHhhccCCCCccc
Confidence 988886442 12211 11110 011345554 45689999999999998 4555665654
No 33
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.08 E-value=2.7e-10 Score=118.20 Aligned_cols=190 Identities=13% Similarity=0.008 Sum_probs=118.8
Q ss_pred hhhhccCCCCccccccchHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhC-CCCCCCCCCCCcCcEE
Q 006087 46 RLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLL 124 (662)
Q Consensus 46 ~~~c~~~~~~~~~~~i~~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~-g~~~~~~~~g~~~~L~ 124 (662)
...|++.+.|. .....+.....++..+...++ ++++||+|||+||++++.++++.... |.. ......+++
T Consensus 9 ~~~~~~~~~~~--~~~~i~~~v~~L~d~l~~~g~---~~vvvglSGGvDSal~a~l~~~A~~~Lg~~----~~~~~~~v~ 79 (279)
T 3q4g_A 9 REEMRVLPSID--PQFEIERRVAFIKRKLTEARY---KSLVLGISGGVDSTTCGRLAQLAVEELNQQ----HNTTEYQFI 79 (279)
T ss_dssp HHHHTCCSSCC--HHHHHHHHHHHHHHHHHHHTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHHH----TTCSCCEEE
T ss_pred HHHHCCCCCCC--HHHHHHHHHHHHHHHHHHcCC---CCEEEEccCCHHHHHHHHHHHHHHHHhCcc----cccCCceEE
Confidence 34599998887 333344455556666666553 58999999999999999987653211 000 000012689
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHcCC-eEEEEEcccccCC-----------------CCCC---CHHHHHHHHHHHHH
Q 006087 125 AITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDGR-----------------PKQG---HLQEAARDMRYRLF 183 (662)
Q Consensus 125 AvhVDHGLR~eS~~Ea~~V~~~c~kLGI-p~~i~~~~~~~~~-----------------~~~~---niE~~AR~~RY~~L 183 (662)
+++++++-+. + .+.++++|+.+|+ ++++++++..... .... ..+....+.|...+
T Consensus 80 av~~p~~~~~-~---~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~L 155 (279)
T 3q4g_A 80 AVRLPYGEQK-D---EDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQ 155 (279)
T ss_dssp EEECCSSSCS-C---HHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCChH-H---HHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHH
Confidence 9999988542 2 3567889999999 8998886532110 0001 13444566789999
Q ss_pred HHHHHHcCCcccccccccChhhHHHHHHhh-ccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCC--eee
Q 006087 184 QKVCIQHQIGVLLIAHHADDQAELFILRLS-RNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRD--WVE 260 (662)
Q Consensus 184 ~e~A~e~G~d~LatGHhaDDqaET~LmrL~-RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~--w~e 260 (662)
..+|.++|+-+|.|||-. |..+--.. .|.| - ..+.|+- ++.|.+|+++|+..|+| .++
T Consensus 156 y~~A~~~g~lVlgTgn~s----E~~~Gy~TkyGD~---~-------~di~Pl~-----dl~Kt~Vr~LA~~lgiP~~i~~ 216 (279)
T 3q4g_A 156 YEIAGYVGGLVLGTDHSA----ENITGFYTKFGDG---A-------CDLAPLF-----GLNKRQVRLLAKTLGAPEQLVY 216 (279)
T ss_dssp HHHHHHHTEEEBCCCCHH----HHHHTCSCTTTTT---C-------CSBCTTT-----TCCHHHHHHHHHHTTCCHHHHT
T ss_pred HHHHHHCCCEEecCccHH----hhhccchhhcCCc---c-------cceeecC-----CCcHHHHHHHHHHhCCcHHHhc
Confidence 999999998777777643 33211000 1211 1 1244553 45689999999999998 455
Q ss_pred CCCCCCC
Q 006087 261 DPTNRSP 267 (662)
Q Consensus 261 DpSN~d~ 267 (662)
-|...+.
T Consensus 217 K~PSa~L 223 (279)
T 3q4g_A 217 KTPTADL 223 (279)
T ss_dssp CCCSCCC
T ss_pred CCCCCCc
Confidence 5555553
No 34
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.96 E-value=2.3e-09 Score=121.34 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=106.4
Q ss_pred chHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHH
Q 006087 62 DMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (662)
Q Consensus 62 ~~~~~~~~f~~~i~~~~-i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea 140 (662)
..+++.+.+...+..+. -...++|+||+|||+||+++++|+++.. |. .++.+++++++.. +..|.
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~al--G~----------~~v~~v~m~~~~~--~~~~~ 370 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDAL--GA----------QNVYGVSMPSKYS--SDHSK 370 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHH--CG----------GGEEEEECCCSSC--CHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHh--Cc----------ccEEEEEECCCCC--CHHHH
Confidence 35566666555555432 1223689999999999999999887532 20 1689999998753 56788
Q ss_pred HHHHHHHHHcCCeEEEEEcccccCC------CCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHHhhc
Q 006087 141 NIVSHRVSDMGIRCEIVRCDWLDGR------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR 214 (662)
Q Consensus 141 ~~V~~~c~kLGIp~~i~~~~~~~~~------~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~LmrL~R 214 (662)
+.++++|+.+||++++++++..+.. ......+......|..++..+|.+.|+.+|.|| |+++.+ .
T Consensus 371 ~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~--------~ 441 (590)
T 3n05_A 371 GDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA--------V 441 (590)
T ss_dssp HHHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH--------H
T ss_pred HHHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh--------c
Confidence 8999999999999999887643210 000012334456688999999999999999999 444422 1
Q ss_pred cCCCcCccccccccccccccccccccccCHHHHHHHHHhCC
Q 006087 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGN 255 (662)
Q Consensus 215 GsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~g 255 (662)
|-.. ..|-. ...+.|+. .+.|.+|+.+++..|
T Consensus 442 Gy~t--~~gd~--~~~~~Pl~-----~l~K~eVr~la~~lg 473 (590)
T 3n05_A 442 GYST--LYGDS--VGAYGPIK-----DVYKTSIFRLAEWRN 473 (590)
T ss_dssp TCCC--SSCTT--SCSBCTTT-----TSCHHHHHHHHHHHH
T ss_pred Cchh--hcCCC--ccceeecC-----CCcHHHHHHHHHHhC
Confidence 2111 11100 11345654 456889999998776
No 35
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.92 E-value=4.1e-09 Score=109.74 Aligned_cols=171 Identities=15% Similarity=0.048 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHh-CCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 64 ~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~-~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
+.....++..+...++ ++++||+|||+||.+++++++...+ .|. .|...+++++++.++-+ .+.+.
T Consensus 31 ~~~v~~L~d~l~~~g~---~~vvvglSGGiDSal~a~La~~A~daLG~------~~~~~~viav~~p~~~~----~~~~d 97 (285)
T 3dpi_A 31 ERRIGFVADYLRTAGL---RACVLGISGGIDSSTAGRLAQLAVERLRA------SGYDARFVAMRLPYGAQ----HDEAD 97 (285)
T ss_dssp HHHHHHHHHHHHHHTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHH------TTCCCEEEEEECCSCC-------CHH
T ss_pred HHHHHHHHHHHHHcCC---CcEEEEccCChhHHHHHHHHHHHHHHhcc------cCcccEEEEEEcCCCCH----HHHHH
Confidence 3334444555555553 5799999999999999888764321 110 01112577888887632 34456
Q ss_pred HHHHHHHcC-CeEEEEEcccccC------C----CCCC------CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 143 VSHRVSDMG-IRCEIVRCDWLDG------R----PKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 143 V~~~c~kLG-Ip~~i~~~~~~~~------~----~~~~------niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
+++.|+.+| |+++++++...+. . +..+ ..+...+++|...+..+|.++|+-+|.|||-.....
T Consensus 98 A~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE~~~ 177 (285)
T 3dpi_A 98 ARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESVM 177 (285)
T ss_dssp HHHHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHhhhC
Confidence 788899999 7999988753211 0 0000 134455778999999999999997777766544332
Q ss_pred HHHHHHhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhCCCCe--eeCCCCC
Q 006087 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGGNRDW--VEDPTNR 265 (662)
Q Consensus 206 ET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w--~eDpSN~ 265 (662)
-.+ ...|.| - ..+.|+. .+.|.+|+.+++..|+|. ++-|...
T Consensus 178 Gy~---T~~GD~---~-------~~~~Pl~-----~l~K~eV~~la~~lg~p~~i~~k~pSa 221 (285)
T 3dpi_A 178 GFF---TKFGDG---G-------ADVLPLA-----GLTKRRVRALARMLGADEPLVLKTPTA 221 (285)
T ss_dssp HHH---HCCCCC---C-------CSBCTTT-----TCCHHHHHHHHHHTTCCHHHHTCCCHH
T ss_pred Ccc---cccCCC---c-------eeEeeec-----CCcHHHHHHHHHHcCCCHHHhcCCCCC
Confidence 111 112322 1 1345664 456889999999999983 4444433
No 36
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.40 E-value=9.9e-07 Score=100.82 Aligned_cols=165 Identities=14% Similarity=0.024 Sum_probs=93.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHh-----hHhCCCCCCC------CCCCCc----------------CcEEEEEEeCCCCC
Q 006087 82 HHRIALGVSGGPDSMALCVLTAG-----WKTGGFNQNG------EAGEFI----------------DGLLAITVDHGLRE 134 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~-----~~~~g~~~~~------~~~g~~----------------~~L~AvhVDHGLR~ 134 (662)
.++++||+|||+||.+++.|++. ....|...+. +...++ .-+.++++....
T Consensus 303 ~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~~~-- 380 (634)
T 3ilv_A 303 SKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQSTRN-- 380 (634)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEECTT--
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCCCC--
Confidence 36799999999999988877431 1112210000 000000 006788877332
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEEcccccC-----------C-CC--CC--CHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 006087 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDG-----------R-PK--QG--HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (662)
Q Consensus 135 eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~-----------~-~~--~~--niE~~AR~~RY~~L~e~A~e~G~d~LatG 198 (662)
.+..+.+.++++|+.+||++++++++..+. . +. .. ..+....+.|...+..+|.+.|+.+|.||
T Consensus 381 ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A~~~g~lvlgTg 460 (634)
T 3ilv_A 381 SGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLTNVKQALLITTS 460 (634)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHHHHHTCEEBCCC
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHHHHhcCCEEeccC
Confidence 345666778899999999999998753221 0 00 01 13444556788899999999999888888
Q ss_pred cccChhhHHHHHHhhccCCCcCccccccccccccccccccccccCHHHHHHHHHhC----CCC----eeeCCCCCC
Q 006087 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLICQGG----NRD----WVEDPTNRS 266 (662)
Q Consensus 199 HhaDDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~~r~~i~k~eI~~ya~~~----gI~----w~eDpSN~d 266 (662)
| ..|.. .|-... .|= ....+.|+ .++.|.+|+.+++.. |+| .++-|...+
T Consensus 461 n----ksE~~-----~Gy~T~--ygD--~~~~~~Pl-----~~l~KteVr~la~~l~~~~glp~l~~i~~k~pSae 518 (634)
T 3ilv_A 461 N----RSEGD-----VGYATM--DGD--TAGGIAPI-----AGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAE 518 (634)
T ss_dssp C----HHHHH-----TTCSCT--TTT--TCSSBBTT-----TTSCHHHHHHHHHHHHHHSCCGGGSSCC-------
T ss_pred c----hhhHh-----hCCccc--cCC--cccCCccc-----CCCcHHHHHHHHHHHHHcCCCchHHHHcCCCCCcC
Confidence 6 33432 221111 010 00123454 356688999988887 887 444444443
No 37
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.23 E-value=4.5e-06 Score=94.00 Aligned_cols=137 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHH
Q 006087 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~ 142 (662)
.+++++.+.+.+..... .+.+|+|++|||.||++++.++++..............+...+.++++.+. ++ .|..+
T Consensus 208 ~~~lr~~L~~aV~~rl~-sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~---~~-~E~~~ 282 (553)
T 1ct9_A 208 KNELRQALEDSVKSHLM-SDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP---GS-PDLKA 282 (553)
T ss_dssp HHHHHHHHHHHHHHHTC-CSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST---TC-HHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC---CC-cHHHH
Confidence 56777778777776543 356899999999999999998876432100000000000002556677552 23 57889
Q ss_pred HHHHHHHcCCeEEEEEcccccCCC---------CCCCH-HHHHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 143 VSHRVSDMGIRCEIVRCDWLDGRP---------KQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 143 V~~~c~kLGIp~~i~~~~~~~~~~---------~~~ni-E~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
+++.|+.+|++|+++.++...... ...+. ...+.... .++.+.+++.|+++|++||.+|+..
T Consensus 283 A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~-~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 283 AQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPM-YLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred HHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHH-HHHHHHHHHcCCeEEEECCCchhcc
Confidence 999999999999998875421100 00111 11122223 3677788899999999999999753
No 38
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.20 E-value=4.2e-06 Score=84.99 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=78.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcH----HHHHHHHHHHHHcCCeEEEEE
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK----EEANIVSHRVSDMGIRCEIVR 158 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~----~Ea~~V~~~c~kLGIp~~i~~ 158 (662)
.|++|++|||+||++.++++.+ +|+ ++.+++..++.+.++. .+.+.++..|+.+|||+++++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~---~G~-----------eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~ 70 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK---NRF-----------SVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGF 70 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEecCcHHHHHHHHHHHH---cCC-----------eEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEE
Confidence 5899999999999999988753 342 6788877776542221 234567889999999999998
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc-ChhhHHHHHHhhccCCCcCccccccccccccccccc
Q 006087 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA-DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (662)
Q Consensus 159 ~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha-DDqaET~LmrL~RGsGi~GLaGM~~~~~i~rPlL~~ 237 (662)
+.+.. ....+ -|.+..++.|++.+++|--. ++|. +-.-+.+...|+. .+-|+...
T Consensus 71 ~~g~~----~~e~e---------~l~~~l~~~~i~~vv~Gdi~s~yqr-~r~e~vc~~~gl~----------~~~PLW~~ 126 (237)
T 3rjz_A 71 TQGEK----EKEVE---------DLKRVLSGLKIQGIVAGALASKYQR-KRIEKVAKELGLE----------VYTPAWGR 126 (237)
T ss_dssp C----------CHH---------HHHHHHTTSCCSEEECC---CCSHH-HHHHHHHHHTTCE----------EECSSSSC
T ss_pred CCCCc----hHHHH---------HHHHHHHhcCCcEEEECCcchHHHH-HHHHHHHHHcCCE----------EEccccCC
Confidence 75421 11122 23334445589999999865 4443 3334444443332 23455443
Q ss_pred cccccCHHHHHHHHHhCCCCeeeCCCC
Q 006087 238 CHDDLKNHSILLICQGGNRDWVEDPTN 264 (662)
Q Consensus 238 ~r~~i~k~eI~~ya~~~gI~w~eDpSN 264 (662)
. ..++..-.-+.|+..+--..+
T Consensus 127 d-----~~~Ll~e~i~~G~~aiiv~v~ 148 (237)
T 3rjz_A 127 D-----AKEYMRELLNLGFKIMVVGVS 148 (237)
T ss_dssp C-----HHHHHHHHHHTTCEEEEEEEE
T ss_pred C-----HHHHHHHHHHCCCEEEEEEEe
Confidence 2 334444344567766544443
No 39
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.14 E-value=5.5e-06 Score=95.50 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHh-CCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHH
Q 006087 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148 (662)
Q Consensus 70 f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~-~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~ 148 (662)
+.+.+...+ .++++||+|||+||++++.++++... .|.. ..++++++++.... +.++.+.++++|+
T Consensus 352 l~~~l~~~g---~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~--------~~~v~~v~m~~~~~--~~~~~~~A~~la~ 418 (680)
T 3sdb_A 352 LEQRLRALD---YPKVVIGVSGGLDSTHALIVATHAMDREGRP--------RSDILAFALPGFAT--GEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHTT---SCEEEEECCSSHHHHHHHHHHHHHHHHTTCC--------GGGEEEEECCC----------CHHHHHHH
T ss_pred HHHHHHHcC---CCcEEEEecCCccHHHHHHHHHHHHHHhCCC--------CceEEEEEECCCCC--CHHHHHHHHHHHH
Confidence 334444433 36899999999999987777764322 1210 12689999986653 3456667899999
Q ss_pred HcCCeEEEEEcccccC------CC--------CCCCHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 006087 149 DMGIRCEIVRCDWLDG------RP--------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (662)
Q Consensus 149 kLGIp~~i~~~~~~~~------~~--------~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGH 199 (662)
.+||+|++++++.... .+ ..-..+....+.|...+..+|.+.|+-++.|||
T Consensus 419 ~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn 483 (680)
T 3sdb_A 419 ALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD 483 (680)
T ss_dssp HHTCEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC
T ss_pred HcCCCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc
Confidence 9999999988763210 00 001124444557888999999999986666654
No 40
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.11 E-value=5.6e-06 Score=92.38 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHH
Q 006087 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (662)
Q Consensus 66 ~~~~f~~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~ 145 (662)
+.+.+.+.+.... ..+.+|++++|||.||.+++.++++.. . .+.++++.+.- ..|..++++
T Consensus 226 l~~~L~~aV~~rl-~sd~~vgv~LSGGlDSS~vaala~~~~-~-------------~v~tfti~~~~----~~E~~~A~~ 286 (513)
T 1jgt_A 226 VRAALEKAVAQRV-TPGDTPLVVLSGGIDSSGVAACAHRAA-G-------------ELDTVSMGTDT----SNEFREARA 286 (513)
T ss_dssp HHHHHHHHHHHHS-CTTCCCEEECCSSHHHHHHHHHHHHHH-S-------------SCEEEEEECSS----CCCHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCcEEEECCCcHHHHHHHHHHHHhC-C-------------CceEEEcCCCC----CCHHHHHHH
Confidence 4444444444433 345789999999999999999887642 1 35577776632 246778899
Q ss_pred HHHHcCCeEEEEEcccccCCCC---------CCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 146 RVSDMGIRCEIVRCDWLDGRPK---------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 146 ~c~kLGIp~~i~~~~~~~~~~~---------~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
.|+.+|++|+++.++....... ..+.....-..-..++.+.+ +.|++++++||.+|+..
T Consensus 287 vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElf 354 (513)
T 1jgt_A 287 VVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPL 354 (513)
T ss_dssp HHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHH
T ss_pred HHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcc
Confidence 9999999999988764311000 00111111111122444555 68999999999999863
No 41
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.09 E-value=4.3e-06 Score=93.09 Aligned_cols=134 Identities=12% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCCccccc-----cchHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEE
Q 006087 53 HAHAVEYL-----TDMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124 (662)
Q Consensus 53 ~~~~~~~~-----i~~~~~~~~f~~~i~~~---~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~ 124 (662)
.-|+++.. .+.++..+++.+.+..+ .+..+.+|++++|||.||.+++.++++. + ..+.
T Consensus 201 ~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~---~-----------~~~~ 266 (503)
T 1q15_A 201 RTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH---F-----------KKLN 266 (503)
T ss_dssp EESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT---C-----------SEEE
T ss_pred eecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh---C-----------CCcE
Confidence 45665432 34455555554444422 1334578999999999999999887532 1 1466
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCC---------CCCCHHHHHHHHHHHHHHHHHHHcCCccc
Q 006087 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVL 195 (662)
Q Consensus 125 AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~---------~~~niE~~AR~~RY~~L~e~A~e~G~d~L 195 (662)
++++.+.- ..|..++++.|+.+|++|+++.++...... ...+.....-....-++.+.| +.|+.++
T Consensus 267 ~~t~~~~~----~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~Vv 341 (503)
T 1q15_A 267 TYSIGTEL----SNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCM 341 (503)
T ss_dssp EEEEEETT----BCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEE
T ss_pred EEEEeCCC----ccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEE
Confidence 77776541 245678899999999999998876421100 000111111122333556666 6789999
Q ss_pred ccccccChhh
Q 006087 196 LIAHHADDQA 205 (662)
Q Consensus 196 atGHhaDDqa 205 (662)
++|+.+|+..
T Consensus 342 ltG~GaDElf 351 (503)
T 1q15_A 342 LTGYGSDLLF 351 (503)
T ss_dssp ECCTTHHHHH
T ss_pred EeCCChhhhc
Confidence 9999999864
No 42
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=97.94 E-value=0.00014 Score=76.34 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=86.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhC------CCC-CCCCCCCCc-CcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCe
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTG------GFN-QNGEAGEFI-DGLLAITVDHGLREESKEEANIVSHRVSDMGIR 153 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~------g~~-~~~~~~g~~-~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp 153 (662)
++++++++|||+||+|||+|+.+.... +.. ......+.+ ..+-++|+|.|. .-++-.+++.++++++|++
T Consensus 58 ~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~--~FpET~ef~d~~~~~ygL~ 135 (308)
T 3fwk_A 58 NGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDD--TFKTLENFIEETSLRYSLS 135 (308)
T ss_dssp SSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTT--CCHHHHHHHHHHHHHTTEE
T ss_pred cCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCC--CCHHHHHHHHHHHHHhCCc
Confidence 367999999999999999998764210 000 000000000 256789999997 4566778999999999998
Q ss_pred EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCcccccccccChhhHHHHHHhhccCCCcCcc----cccccc
Q 006087 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVLGLA----GMAFSS 228 (662)
Q Consensus 154 ~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~-G~d~LatGHhaDDqaET~LmrL~RGsGi~GLa----GM~~~~ 228 (662)
+++...+. ..... +.+.++.+.. +++.+++|--.+|- + |. .+.-+. +.+...
T Consensus 136 L~v~~p~~------~~~~~--------~~cc~~~K~~P~~~AwitG~RR~e~--~------Ra-~l~~~e~~d~~w~~~i 192 (308)
T 3fwk_A 136 LYESDRDK------CETMA--------EAFETFLQVFPETKAIVIGIRHTDP--F------GE-HLKPIQKTDANWPDFY 192 (308)
T ss_dssp EEECCTTS------CCCHH--------HHHHHHHHHCTTCCEEECCCCTTST--T------CT-TCCSEEECCTTSCSCE
T ss_pred EEEeCCCC------CHHHH--------HHHHHHHHhCCCCCEEEEEeecCCc--c------cC-CCCeeeccCCCCCCeE
Confidence 87654221 11122 2444555555 68889999877741 1 11 111010 000000
Q ss_pred ccccccccccccccCHHHHHHHHHhCCCCee
Q 006087 229 QIFSSYAYSCHDDLKNHSILLICQGGNRDWV 259 (662)
Q Consensus 229 ~i~rPlL~~~r~~i~k~eI~~ya~~~gI~w~ 259 (662)
-+.|++ +.+..+|-.|..++++||.
T Consensus 193 -KVnPL~-----dWT~~DVW~YI~~~~LPyn 217 (308)
T 3fwk_A 193 -RLQPLL-----HWNLANIWSFLLYSNEPIC 217 (308)
T ss_dssp -EECTTT-----TCCHHHHHHHHHHHTCCCC
T ss_pred -EEechh-----hCCHHHHHHHHHHcCCCCC
Confidence 123544 4578899999999999973
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=96.93 E-value=0.0036 Score=70.72 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=74.0
Q ss_pred HHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcC
Q 006087 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG 151 (662)
Q Consensus 72 ~~i~~~~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLG 151 (662)
..+.+.++ ++++|++|||.||.+.+.++.+.... .++.++++- -+..|+.....++++|+.+|
T Consensus 293 dy~~k~g~---~~~vlglSGGiDSal~~~la~~alg~------------~~v~~v~mp--~~~ts~~t~~~a~~la~~lg 355 (565)
T 4f4h_A 293 DYIGKNGF---PGAIIGLSGGVDSALVLAVAVDALGA------------ERVRAVMMP--SRYTAGISTTDAADMARRVG 355 (565)
T ss_dssp HHHHHTTC---CCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECC--CTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC---CcEEEecCCCccHHHHHHHHHHHhCC------------ccEEEEecc--ccccccchHHHHHHHHHHhC
Confidence 44444444 57999999999999888887654321 157776653 34456666777889999999
Q ss_pred CeEEEEEccccc-------CCC---CC-C-CHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhH
Q 006087 152 IRCEIVRCDWLD-------GRP---KQ-G-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (662)
Q Consensus 152 Ip~~i~~~~~~~-------~~~---~~-~-niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaE 206 (662)
+.++.++++... ... .. . ..|..--+.|-..|..+|.++|.=+|-|| |..|
T Consensus 356 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTg----n~sE 418 (565)
T 4f4h_A 356 VRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTG----NKSE 418 (565)
T ss_dssp CEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC----CHHH
T ss_pred CceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCC----chhh
Confidence 999988775211 000 01 1 13333344677789999999987555444 4556
No 44
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=91.62 E-value=0.58 Score=41.28 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC------------------CC----CcHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL------------------RE----ESKEEA 140 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL------------------R~----eS~~Ea 140 (662)
++|+|++.|...|..++..+..+.... ...++++||-... .. +..+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT----------GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIA 72 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH----------CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHH
Confidence 589999999999998887666554321 1268899985421 10 011122
Q ss_pred HHHHHHHHHcCCeE---EEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 141 NIVSHRVSDMGIRC---EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 141 ~~V~~~c~kLGIp~---~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
+.+.+.++..|++. ...- . .+++. ..+.+.|+++++|.|++|+|..
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~---~-----~g~~~--------~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 73 VQAKTRATELGVPADKVRAFV---K-----GGRPS--------RTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HHHHHHHHHTTCCGGGEEEEE---E-----ESCHH--------HHHHHHHHHTTCSEEEECSSCT
T ss_pred HHHHHHHHhcCCCccceEEEE---e-----cCCHH--------HHHHHHHHHhCCCEEEEeCCCC
Confidence 33455667778876 4321 1 12222 3366788899999999998754
No 45
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=90.90 E-value=2.1 Score=39.27 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEE--EEe-CC----------------CCCCcHHH
Q 006087 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI--TVD-HG----------------LREESKEE 139 (662)
Q Consensus 79 i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~Av--hVD-HG----------------LR~eS~~E 139 (662)
....++|+|++.|...|..++..+..+...+ .++.++ ||- .. ++.+..+.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~~~-----------a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-----------AKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHTTT-----------SEEEEEEECCC--------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhCCC-----------CEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHH
Confidence 3445799999999999998887666554311 267788 652 11 11112222
Q ss_pred HHHHHHHHHHcCCe-EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 140 ANIVSHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 140 a~~V~~~c~kLGIp-~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
.+.+.+.++..|++ +.+.-. .+++ ...+.++|++.++|.|++|.+.....+.
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~--------~G~~--------~~~I~~~a~~~~~DLIV~G~~g~~~~~~ 135 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPI--------VGAP--------VDALVNLADEEKADLLVVGNVGLSTIAG 135 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEE--------CSSH--------HHHHHHHHHHTTCSEEEEECCCCCSHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEe--------cCCH--------HHHHHHHHHhcCCCEEEECCCCCCcccc
Confidence 33445556667887 554321 1222 1236678889999999999986654443
No 46
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=90.25 E-value=1.1 Score=40.91 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=61.2
Q ss_pred CeEEEEEcC-ChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC-------cHHHHHHHHHHHHHcCCeE
Q 006087 83 HRIALGVSG-GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRC 154 (662)
Q Consensus 83 ~kVLVAVSG-G~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e-------S~~Ea~~V~~~c~kLGIp~ 154 (662)
++|+||+.| ...|..++..+..+.... ...+.++||-....+. ..+..+.+.+.+++.|+++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~----------~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 94 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR----------GVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEG 94 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH----------TCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 689999999 999998887766554321 1268899986543211 1122233455666778887
Q ss_pred EEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 155 ~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
.+... .. .+++. +.+.+.|++.++|.|++|.+..
T Consensus 95 ~~~~~-v~-----~G~~~--------~~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 95 EEHLL-VR-----GKEPP--------DDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp EEEEE-ES-----SSCHH--------HHHHHHHHHTTCSEEEEECCEE
T ss_pred eEEEE-ec-----CCCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 65321 11 12222 3467788999999999998754
No 47
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=89.65 E-value=3.1 Score=41.40 Aligned_cols=99 Identities=7% Similarity=-0.020 Sum_probs=66.3
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcc
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
+.++|+||+.|+..|...+..+..+.... ...+.++||...-. ..+..+.+.+.+++.|++..+.-.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~----------~~~l~ll~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~- 235 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKT----------GGELHIIHVSEDGD--KTADLRVMEEVIGAEGIEVHVHIE- 235 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEECSSSC--CHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhc----------CCEEEEEEEccCch--HHHHHHHHHHHHHHcCCcEEEEEe-
Confidence 34789999999999998777666554321 12688889865422 344555677778888998554321
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 161 ~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
.+++. ..+.+++++.+++.|++|.+...-.+.
T Consensus 236 -------~g~~~--------~~I~~~a~~~~~dLlV~G~~~~~~~~~ 267 (294)
T 3loq_A 236 -------SGTPH--------KAILAKREEINATTIFMGSRGAGSVMT 267 (294)
T ss_dssp -------CSCHH--------HHHHHHHHHTTCSEEEEECCCCSCHHH
T ss_pred -------cCCHH--------HHHHHHHHhcCcCEEEEeCCCCCCccc
Confidence 12222 346678889999999999986644443
No 48
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=89.40 E-value=0.17 Score=44.61 Aligned_cols=96 Identities=9% Similarity=0.029 Sum_probs=56.5
Q ss_pred CeEEEEEcCChh--HHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC-------------C----cHHHHHHH
Q 006087 83 HRIALGVSGGPD--SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------------E----SKEEANIV 143 (662)
Q Consensus 83 ~kVLVAVSGG~D--SmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~-------------e----S~~Ea~~V 143 (662)
++|+|++.|... |..++..+..+.... ..+++++||-..... . ..+..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID----------DAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH----------TCEEEEEEEECC----------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc----------CCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHH
Confidence 689999999999 887776655543321 126888898543210 0 01123345
Q ss_pred HHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccccc
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHha 201 (662)
+++++++|++......... .|++. ..+.+.++++++|.|++|+|.
T Consensus 72 ~~~~~~~~~~~~~v~~~~~-----~g~~~--------~~I~~~a~~~~~dliV~G~~~ 116 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVA-----EGSPK--------DKILALAKSLPADLVIIASHR 116 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEE-----ESCHH--------HHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHcCCCCCceEEEEE-----ecChH--------HHHHHHHHHhCCCEEEEeCCC
Confidence 6677777765211111111 12222 336678899999999999984
No 49
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=89.21 E-value=1.7 Score=37.91 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=56.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhH-hCCCCCCCCCCCCcCcEEEEEEeCCCCCC------------------cHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGLREE------------------SKEEANIV 143 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~-~~g~~~~~~~~g~~~~L~AvhVDHGLR~e------------------S~~Ea~~V 143 (662)
++|+|++.|...|..++..+..+. ... ...++++||-...... ..+..+.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDA----------DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCT----------TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCC----------CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998888776665 321 1278899986553311 11112233
Q ss_pred HHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
.+.+...|+++...-. .|++. +.+.+.++ ++|.|++|+|...
T Consensus 72 ~~~~~~~g~~~~~~v~--------~g~~~--------~~I~~~a~--~~dliV~G~~~~~ 113 (138)
T 3idf_A 72 STFFTEKGINPFVVIK--------EGEPV--------EMVLEEAK--DYNLLIIGSSENS 113 (138)
T ss_dssp HHHHHTTTCCCEEEEE--------ESCHH--------HHHHHHHT--TCSEEEEECCTTS
T ss_pred HHHHHHCCCCeEEEEe--------cCChH--------HHHHHHHh--cCCEEEEeCCCcc
Confidence 4445556877654321 12221 23455565 8999999987643
No 50
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.82 E-value=1.5 Score=38.84 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=58.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC--------------CCc-----HHHHHH
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--------------EES-----KEEANI 142 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR--------------~eS-----~~Ea~~ 142 (662)
-++|+|++.|...|..++..+..+.... ...++++||-.... .+. .+-.+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI----------GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQK 75 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHH----------TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999998887666554321 12688888743210 001 122344
Q ss_pred HHHHHHHcCCeE-EEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhh
Q 006087 143 VSHRVSDMGIRC-EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (662)
Q Consensus 143 V~~~c~kLGIp~-~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqa 205 (662)
+.++++++|++. ... +. .+++. +.+.+.|+++++|.|++|+|.....
T Consensus 76 l~~~~~~~~~~~~~~~-~~-------~g~~~--------~~I~~~a~~~~~dliV~G~~~~~~~ 123 (150)
T 3tnj_A 76 LSQIGNTLGIDPAHRW-LV-------WGEPR--------EEIIRIAEQENVDLIVVGSHGRHGL 123 (150)
T ss_dssp HHHHHHHHTCCGGGEE-EE-------ESCHH--------HHHHHHHHHTTCSEEEEEEC-----
T ss_pred HHHHHHHcCCCcceEE-Ee-------cCCHH--------HHHHHHHHHcCCCEEEEecCCCCCc
Confidence 667778888873 211 11 12222 3467789999999999998865433
No 51
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=88.21 E-value=0.46 Score=41.98 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=55.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC-CC-----------------cHHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE-----------------SKEEANIVS 144 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR-~e-----------------S~~Ea~~V~ 144 (662)
++|+|++.|...|..++..+..+.... ...++++||-.... .. ..+..+.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH----------QANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQ 75 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 689999999999988887666554321 12688889743221 00 011112233
Q ss_pred HHHHHcCC-eEEEEEcccccCCCCCCCHHHHHHHHHHHHHHH-HHHHcCCcccccccccC
Q 006087 145 HRVSDMGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 145 ~~c~kLGI-p~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e-~A~e~G~d~LatGHhaD 202 (662)
+.+...|+ ++...-. .|++. ..+.+ .|++.++|.|++|+|..
T Consensus 76 ~~~~~~g~~~~~~~~~--------~g~~~--------~~I~~~~a~~~~~dliV~G~~~~ 119 (146)
T 3s3t_A 76 QFVATTSAPNLKTEIS--------YGIPK--------HTIEDYAKQHPEIDLIVLGATGT 119 (146)
T ss_dssp HHHTTSSCCCCEEEEE--------EECHH--------HHHHHHHHHSTTCCEEEEESCCS
T ss_pred HHHHhcCCcceEEEEe--------cCChH--------HHHHHHHHhhcCCCEEEECCCCC
Confidence 34445677 5543321 12221 23556 88899999999998754
No 52
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=88.06 E-value=1.7 Score=38.00 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=59.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe-C-C--CCC------------CcHHHHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-H-G--LRE------------ESKEEANIVSHR 146 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD-H-G--LR~------------eS~~Ea~~V~~~ 146 (662)
++|+|++.|...|..++..+..+.... ...++++||. . . ... ...+-.+.+.++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRH----------DAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHH----------TCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhc----------CCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 589999999999988776655544321 1268888885 2 1 110 011223456677
Q ss_pred HHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhH
Q 006087 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (662)
Q Consensus 147 c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaE 206 (662)
+++.|++.....+. .|++. +.+.+.|++.++|.|++|+| ....+
T Consensus 73 ~~~~~~~~~~~~~~-------~g~~~--------~~I~~~a~~~~~dliV~G~~-~~~~~ 116 (141)
T 1jmv_A 73 AESVDYPISEKLSG-------SGDLG--------QVLSDAIEQYDVDLLVTGHH-QDFWS 116 (141)
T ss_dssp HHHSSSCCCCEEEE-------EECHH--------HHHHHHHHHTTCCEEEEEEC-CCCHH
T ss_pred HHHcCCCceEEEEe-------cCCHH--------HHHHHHHHhcCCCEEEEeCC-Cchhh
Confidence 78888875211111 12221 23567888999999999998 54433
No 53
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=86.59 E-value=2.4 Score=37.08 Aligned_cols=94 Identities=7% Similarity=0.099 Sum_probs=55.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC----C---CC----c--HHHHHHHHHHHHH
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL----R---EE----S--KEEANIVSHRVSD 149 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL----R---~e----S--~~Ea~~V~~~c~k 149 (662)
++|+|++.|...|..++..+..+.... ...++++||.... . ++ . .+..+.+.++++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH----------GARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL 72 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999988776655543321 1268888885421 1 00 0 0112234445554
Q ss_pred cCC-eEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 150 MGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 150 LGI-p~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
.|+ ++.+... .+++. +.+.+.|+++++|.|++|+|..
T Consensus 73 ~g~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~dliV~G~~~~ 110 (137)
T 2z08_A 73 TGVPKEDALLL--------EGVPA--------EAILQAARAEKADLIVMGTRGL 110 (137)
T ss_dssp HCCCGGGEEEE--------ESSHH--------HHHHHHHHHTTCSEEEEESSCT
T ss_pred cCCCccEEEEE--------ecCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 677 5433211 12221 3466788999999999998753
No 54
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=85.12 E-value=4.9 Score=36.04 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC----------CC-------CCc-----H--
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG----------LR-------EES-----K-- 137 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG----------LR-------~eS-----~-- 137 (662)
-++|+||+.|...|..++..+..+... +..+++++||-.. +. +.. .
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTL----------KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCS----------SCCEEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh----------cCCeEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 368999999999999887766554322 1137888887321 10 110 0
Q ss_pred ----H----HHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 138 ----E----EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 138 ----~----Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
+ ..+.+.+.++..|+++.+.- .. |++. +.+.+.|+++++|.|++|+|..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v-~~-------G~~~--------~~I~~~a~~~~~dlIV~G~~g~ 131 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDII-VV-------GIPH--------EEIVKIAEDEGVDIIIMGSHGK 131 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEE-EE-------ECHH--------HHHHHHHHHTTCSEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEE-cC-------CCHH--------HHHHHHHHHcCCCEEEEcCCCC
Confidence 0 01112233445688765442 11 2222 2366788999999999998754
No 55
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=85.08 E-value=1.8 Score=39.33 Aligned_cols=96 Identities=7% Similarity=0.062 Sum_probs=56.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC---------CC----------CCc----HH
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG---------LR----------EES----KE 138 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG---------LR----------~eS----~~ 138 (662)
-++|+|++.|..+|..++..+..+... +...++++||-.. +- .+. .+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKM----------EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKE 74 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCS----------CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHH
Confidence 368999999999999887766654322 1126888887321 10 010 01
Q ss_pred ----HHHHHHHHHHHcCCeEEE--EEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 139 ----EANIVSHRVSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 139 ----Ea~~V~~~c~kLGIp~~i--~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
..+.+.+.++..|+++.. .- . .+++ ...+.+.|+++++|.|++|+|...
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~-~-------~g~~--------~~~I~~~a~~~~~DlIV~G~~g~~ 129 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTII-R-------FGIP--------WDEIVKVAEEENVSLIILPSRGKL 129 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEE-E-------EECH--------HHHHHHHHHHTTCSEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEE-e-------cCCh--------HHHHHHHHHHcCCCEEEECCCCCC
Confidence 111233334456887654 21 1 1222 133667889999999999988543
No 56
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=83.29 E-value=5 Score=35.81 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=57.4
Q ss_pred CCeEEEEEc--CChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC----------------CcHHHHHHH
Q 006087 82 HHRIALGVS--GGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE----------------ESKEEANIV 143 (662)
Q Consensus 82 ~~kVLVAVS--GG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~----------------eS~~Ea~~V 143 (662)
-++|+|++. |...|..++..+..+.... ...++++||-..... +..+..+.+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY----------DVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH----------TCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 478999999 9999998887666554321 126888998543210 011112223
Q ss_pred HHHHHHcCCe-EEEEEcccccCCCCCCCHHHHHHHHHHHHHHHH-HHHcCCcccccccccCh
Q 006087 144 SHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV-CIQHQIGVLLIAHHADD 203 (662)
Q Consensus 144 ~~~c~kLGIp-~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~-A~e~G~d~LatGHhaDD 203 (662)
.+.++..|++ +...-. . .|++. ..+.+. |++.++|.|++|+|...
T Consensus 85 ~~~~~~~g~~~~~~~v~-~------~g~~~--------~~I~~~~a~~~~~DlIV~G~~g~~ 131 (156)
T 3fg9_A 85 VQLAEQRGVNQVEPLVY-E------GGDVD--------DVILEQVIPEFKPDLLVTGADTEF 131 (156)
T ss_dssp HHHHHHHTCSSEEEEEE-E------CSCHH--------HHHHHTHHHHHCCSEEEEETTCCC
T ss_pred HHHHHHcCCCceEEEEE-e------CCCHH--------HHHHHHHHHhcCCCEEEECCCCCC
Confidence 3446667884 543321 1 12221 335666 88999999999998654
No 57
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=80.02 E-value=13 Score=33.84 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCh---------hHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC----CC---C--CcHH-----
Q 006087 82 HHRIALGVSGGP---------DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG----LR---E--ESKE----- 138 (662)
Q Consensus 82 ~~kVLVAVSGG~---------DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG----LR---~--eS~~----- 138 (662)
-++|+|++.|.. .|..++..+..+..... .....++++||-.. +. . .+..
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~-------~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSN-------TSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTC-------TTSEEEEEEEEEC----------CCCCSHHHHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhccc-------CCCCEEEEEEEeecccccccccccccCCHHHHHHH
Confidence 368999999999 88877776655321100 01126888887421 10 0 0011
Q ss_pred -------HHHH---HHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChh
Q 006087 139 -------EANI---VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (662)
Q Consensus 139 -------Ea~~---V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDq 204 (662)
..+. +.+.+...|+++.+.-. .+++ ...+.+.|++++++.|++|+|...-
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~--------~G~~--------~~~I~~~a~~~~~DLIVmG~~g~~~ 137 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIK--------TGDP--------KDVICQEVKRVRPDFLVVGSRGLGR 137 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCEEEEEEE--------ESCH--------HHHHHHHHHHHCCSEEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEe--------cCCH--------HHHHHHHHHHhCCCEEEEeCCCCCh
Confidence 0112 23335567887654321 1222 1346678889999999999886543
No 58
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=79.17 E-value=27 Score=35.94 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=73.9
Q ss_pred cccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCC
Q 006087 59 YLTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (662)
Q Consensus 59 ~~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHG 131 (662)
...+.+.+.+.|.+.-...++ ....||+|-+||+. ..|-.|+..+.. | .++.++.+|.-||.
T Consensus 60 ~~~~~~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~-g--------~l~~~i~~Visn~~ 128 (286)
T 3n0v_A 60 DDFDEAGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKAD--HCLNDLLYRQRI-G--------QLGMDVVAVVSNHP 128 (286)
T ss_dssp SSCCHHHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCC--HHHHHHHHHHHT-T--------SSCCEEEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCC--CCHHHHHHHHHC-C--------CCCcEEEEEEeCcH
Confidence 346788888888765444332 23468999999984 455566665543 2 12347888777874
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHH
Q 006087 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (662)
Q Consensus 132 LR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lm 210 (662)
+ ++.+|+++|||++..+... .+-++ --..+.+..++++.|.|+++....=.-+.++-
T Consensus 129 ---~-------~~~~A~~~gIp~~~~~~~~-------~~r~~-----~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~ 185 (286)
T 3n0v_A 129 ---D-------LEPLAHWHKIPYYHFALDP-------KDKPG-----QERKVLQVIEETGAELVILARYMQVLSPELCR 185 (286)
T ss_dssp ---T-------THHHHHHTTCCEEECCCBT-------TBHHH-----HHHHHHHHHHHHTCSEEEESSCCSCCCHHHHH
T ss_pred ---H-------HHHHHHHcCCCEEEeCCCc-------CCHHH-----HHHHHHHHHHhcCCCEEEecccccccCHHHHh
Confidence 2 2356889999998754210 11111 11235566778899999999876544455443
No 59
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=77.65 E-value=5.1 Score=39.81 Aligned_cols=95 Identities=9% Similarity=0.099 Sum_probs=64.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccc
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~ 161 (662)
-++|+|++.|...|..++..+..+.... ...++++||... .+..+..+.+.+.+...|+++..... +
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 73 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVT----------QSHLHLLVCEKR--RDHSAALNDLAQELREEGYSVSTNQA-W 73 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHH----------CCEEEEEEECSS--SCCHHHHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhc----------CCeEEEEEeeCc--HHHHHHHHHHHHHHhhCCCeEEEEEE-e
Confidence 4789999999999988877665554321 126889998663 34445555566666778988765532 1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 162 ~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
.+++. ..+.+.+++.++|.|++|++...
T Consensus 74 ------~g~~~--------~~i~~~a~~~~~dliV~G~~~~~ 101 (290)
T 3mt0_A 74 ------KDSLH--------QTIIAEQQAEGCGLIIKQHFPDN 101 (290)
T ss_dssp ------SSSHH--------HHHHHHHHHHTCSEEEEECCCSC
T ss_pred ------CCCHH--------HHHHHHHHhcCCCEEEEecccCC
Confidence 12221 33567788899999999998754
No 60
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=76.58 E-value=4.6 Score=40.17 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=58.3
Q ss_pred CCCeEEEEEcCChh-------HHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC-----C-------cHHHHH
Q 006087 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-----E-------SKEEAN 141 (662)
Q Consensus 81 ~~~kVLVAVSGG~D-------SmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~-----e-------S~~Ea~ 141 (662)
+.++|+||+.|+.. |..++..+..+.... ...++++||...... + ..+..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA----------KATLHVISAHPSPMLSSADPTFQLSETIEARYRE 202 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT----------TCEEEEEEEEC---------CHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc----------CCeEEEEEEecCccccccCchhHHHHHHHHHHHH
Confidence 35799999999987 777766655544321 126888998653210 0 011233
Q ss_pred HHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 142 ~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
.+.++++++|++.....+ . .+++. ..+.++++++++|.|++|+|...
T Consensus 203 ~l~~~~~~~g~~~~~~~v--~-----~g~~~--------~~I~~~a~~~~~dLiVmG~~g~~ 249 (290)
T 3mt0_A 203 ACRTFQAEYGFSDEQLHI--E-----EGPAD--------VLIPRTAQKLDAVVTVIGTVART 249 (290)
T ss_dssp HHHHHHHHHTCCTTTEEE--E-----ESCHH--------HHHHHHHHHHTCSEEEEECCSSC
T ss_pred HHHHHHHHcCCCcceEEE--e-----ccCHH--------HHHHHHHHhcCCCEEEECCCCCc
Confidence 466678888884211111 0 12222 34667889999999999987653
No 61
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=71.88 E-value=59 Score=33.48 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC
Q 006087 60 LTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (662)
Q Consensus 60 ~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL 132 (662)
..+.+.+.+.|.+.-...++ ....||+|-+||+. | .|-.|+..+.... ++.++.+|.-||.
T Consensus 66 ~~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g-~-~l~~ll~~~~~g~---------l~~~i~~Visn~~- 133 (292)
T 3lou_A 66 ALRVDALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLE-H-CLADLLFRWKMGE---------LKMDIVGIVSNHP- 133 (292)
T ss_dssp -CCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCC-H-HHHHHHHHHHHTS---------SCCEEEEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHhcCcEEEeeccCCCCEEEEEEcCCC-c-CHHHHHHHHHcCC---------CCcEEEEEEeCcH-
Confidence 35678888888765444332 23468999999984 3 5666666654321 2347778777873
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHH
Q 006087 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (662)
Q Consensus 133 R~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lmr 211 (662)
+ ++.+|+++|||++..+.. . .+-++. -..+.+..++++.|.|+++....=.-+.++-.
T Consensus 134 --~-------~~~~A~~~gIp~~~~~~~-----~--~~r~~~-----~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~ 191 (292)
T 3lou_A 134 --D-------FAPLAAQHGLPFRHFPIT-----A--DTKAQQ-----EAQWLDVFETSGAELVILARYMQVLSPEASAR 191 (292)
T ss_dssp --T-------THHHHHHTTCCEEECCCC-----S--SCHHHH-----HHHHHHHHHHHTCSEEEESSCCSCCCHHHHHH
T ss_pred --H-------HHHHHHHcCCCEEEeCCC-----c--CCHHHH-----HHHHHHHHHHhCCCEEEecCchhhCCHHHHhh
Confidence 2 235688999999865321 1 111111 12355667788999999998765444454433
No 62
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=69.64 E-value=40 Score=34.99 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCC
Q 006087 60 LTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (662)
Q Consensus 60 ~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGL 132 (662)
..+.+.+.+.|.+.-...++ .+..||+|-+||+ +| .|-.|+..+.. | .++.++.+|.-||.
T Consensus 76 ~~~~~~L~~~l~~la~~l~m~~~l~~~~~~~ri~vl~Sg~-g~-nl~~ll~~~~~-g--------~l~~~I~~Visn~~- 143 (302)
T 3o1l_A 76 PFDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRE-SH-CLADLLHRWHS-D--------ELDCDIACVISNHQ- 143 (302)
T ss_dssp SSCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSC-CH-HHHHHHHHHHT-T--------CSCSEEEEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHHhCCeeeecccCCCcEEEEEEeCC-ch-hHHHHHHHHHC-C--------CCCcEEEEEEECcH-
Confidence 35688888888765444332 2456899999998 34 56666665543 2 12347888888873
Q ss_pred CCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHH
Q 006087 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (662)
Q Consensus 133 R~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~ 208 (662)
+ ++++|+++|||++..+... .+-++. -..+.+..++.+.|.|+++-...=.-+.+
T Consensus 144 --~-------~~~~A~~~gIp~~~~~~~~-------~~r~~~-----~~~~~~~l~~~~~DliVlagym~IL~~~~ 198 (302)
T 3o1l_A 144 --D-------LRSMVEWHDIPYYHVPVDP-------KDKEPA-----FAEVSRLVGHHQADVVVLARYMQILPPQL 198 (302)
T ss_dssp --T-------THHHHHTTTCCEEECCCCS-------SCCHHH-----HHHHHHHHHHTTCSEEEESSCCSCCCTTH
T ss_pred --H-------HHHHHHHcCCCEEEcCCCc-------CCHHHH-----HHHHHHHHHHhCCCEEEHhHhhhhcCHHH
Confidence 2 3467899999997753210 111111 12355667788999999987654333333
No 63
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=68.98 E-value=17 Score=36.26 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCChh-------HHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC--------CcH--------
Q 006087 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESK-------- 137 (662)
Q Consensus 81 ~~~kVLVAVSGG~D-------SmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~--------eS~-------- 137 (662)
+.++|+||+.|+.+ |..++..+..+.....+ ...+.++||...... ...
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~--------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQK--------DPDVHLLSAYPVAPINIAIELPDFDPNLYNNALR 226 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCS--------SCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccC--------CCeEEEEEeecCcchhhhccCCcccHHHHHHHHH
Confidence 35799999999994 46555544443322100 126888998543211 110
Q ss_pred -HHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 138 -EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 138 -~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
+-.+.++++++++|++.....+ . .++.. ..+.+++++++++.|++|.|..--.+.
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~v--~-----~g~~~--------~~I~~~a~~~~~dLiV~G~~g~~~~~~ 282 (319)
T 3olq_A 227 GQHLIAMKELRQKFSIPEEKTHV--K-----EGLPE--------QVIPQVCEELNAGIVVLGILGRTGLSA 282 (319)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEE--E-----ESCHH--------HHHHHHHHHTTEEEEEEECCSCCSTHH
T ss_pred HHHHHHHHHHHHHhCCCcccEEE--e-----cCCcH--------HHHHHHHHHhCCCEEEEeccCccCCcc
Confidence 1134566777888875110111 0 12221 346788999999999999986654443
No 64
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=58.36 E-value=15 Score=36.37 Aligned_cols=99 Identities=11% Similarity=0.148 Sum_probs=58.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC---------C---------CcHHHHHHH
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---------E---------ESKEEANIV 143 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR---------~---------eS~~Ea~~V 143 (662)
-++|+|++.|...|..++..+..+.... ...++++||-.... . ++.+..+.+
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVG----------VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTT----------CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988876665554331 12688888632111 0 011122334
Q ss_pred HHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhH
Q 006087 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (662)
Q Consensus 144 ~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaE 206 (662)
.+.+...|+++....+.+ .+++. . .+ .+++.++|.|++|.+......
T Consensus 92 ~~~~~~~g~~~~~~~v~~------~g~~~---~-----~I--~a~~~~~DliV~G~~g~~~~~ 138 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFP------AGDPV---V-----EI--IKASENYSFIAMGSRGASKFK 138 (294)
T ss_dssp HHHHHHTTCEEEECSSCC------EECHH---H-----HH--HHHHTTSSEEEEECCCCCHHH
T ss_pred HHHHHHcCCCcceeEeec------cCChh---H-----he--eeccCCCCEEEEcCCCCcccc
Confidence 455667788876511111 12222 1 12 788899999999988765443
No 65
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=53.56 E-value=9.4 Score=35.49 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.4
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceEecc
Q 006087 627 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 660 (662)
Q Consensus 627 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p 660 (662)
+.++-+.-.| ||...|..+|||.+.+|++++||
T Consensus 75 kLKklf~d~k-IP~~~R~~~Pll~~~~~~IiwV~ 107 (142)
T 3hj7_A 75 KLKEIFIEAK-IPRMERDRWPIVEDADGRILWVP 107 (142)
T ss_dssp EHHHHHHHTT-CCHHHHTTCCEEECTTCCEEEET
T ss_pred cHHHHHHHcC-CCHHHhCCceEEEECCCeEEEEe
Confidence 6778888877 99999999999999889999987
No 66
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=50.72 E-value=1.3e+02 Score=29.45 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=58.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|-+||+. |- |-.|+...+ .+ .++.++.+|.-|+ +++ .+.++|+++|||+++.+..
T Consensus 3 ~riavl~Sg~G-sn-l~ali~~~~-~~--------~l~~eI~~Visn~---~~a-----~v~~~A~~~gIp~~~~~~~-- 61 (211)
T 3p9x_A 3 KRVAIFASGSG-TN-AEAIIQSQK-AG--------QLPCEVALLITDK---PGA-----KVVERVKVHEIPVCALDPK-- 61 (211)
T ss_dssp CEEEEECCTTC-HH-HHHHHHHHH-TT--------CCSSEEEEEEESC---SSS-----HHHHHHHTTTCCEEECCGG--
T ss_pred CEEEEEEeCCc-hH-HHHHHHHHH-cC--------CCCcEEEEEEECC---CCc-----HHHHHHHHcCCCEEEeChh--
Confidence 47999999975 43 344444332 22 1233677776664 232 5889999999998765321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lm 210 (662)
.. .+-++. -..+.+..++.+.|.|+++....=.-+.++-
T Consensus 62 ~~----~~r~~~-----d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~ 100 (211)
T 3p9x_A 62 TY----PSKEAY-----EIEVVQQLKEKQIDFVVLAGYMRLVGPTLLG 100 (211)
T ss_dssp GS----SSHHHH-----HHHHHHHHHHTTCCEEEESSCCSCCCHHHHH
T ss_pred hc----Cchhhh-----HHHHHHHHHhcCCCEEEEeCchhhcCHHHHh
Confidence 11 111111 1235566778899999998876544444443
No 67
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=50.72 E-value=37 Score=33.66 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=55.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC----C----CcH--------HH-HHHHH-
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----E----ESK--------EE-ANIVS- 144 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR----~----eS~--------~E-a~~V~- 144 (662)
++|+|++.|...|..++..+..+.... ...++++||-.... . +.. ++ .+.++
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN----------GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH----------CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc----------CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHH
Confidence 689999999999887776655443321 12688889743211 0 000 00 11222
Q ss_pred --HHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 145 --HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 145 --~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
+.+...|+++.+... |. +++ ...+.+.+++.++|.|++|++...
T Consensus 78 ~~~~~~~~~v~~~~~~~-~~------g~~--------~~~i~~~a~~~~~DLiV~G~~g~~ 123 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVI-WH------NRP--------YEAIIEEVITDKHDLLIKMAHQHD 123 (319)
T ss_dssp HHHHHHHTTCCEEEEEE-EC------SCH--------HHHHHHHHHHHTCSEEEEEEBCC-
T ss_pred HHHHHhhcCCeEEEEEE-ec------CCh--------HHHHHHHHHhcCCCEEEEecCcCc
Confidence 233456888765532 11 222 233667788889999999998754
No 68
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=47.65 E-value=51 Score=33.87 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred ccchHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC-C
Q 006087 60 LTDMTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH-G 131 (662)
Q Consensus 60 ~i~~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH-G 131 (662)
..+.+.+.+.|.+.-...++ ....||+|-+||+. | .|-.|+..+.. | .++.++.+|.-|| .
T Consensus 60 ~~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g-~-nl~~ll~~~~~-g--------~l~~~i~~Visn~p~ 128 (288)
T 3obi_A 60 VIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSD-H-CLADILYRWRV-G--------DLHMIPTAIVSNHPR 128 (288)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEEEEEETTSCEEEEEEECSCC-H-HHHHHHHHHHT-T--------SSCEEEEEEEESSCG
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEeeccCCCcEEEEEEcCCC-C-CHHHHHHHHHC-C--------CCCeEEEEEEcCCCh
Confidence 45688888888765554432 23458999999984 4 44455555532 2 1234677777787 2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHH
Q 006087 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (662)
Q Consensus 132 LR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lmr 211 (662)
- ++++|+++|||++..+.. . .+-++ --..+.+..++++.|.|+++....=.-+.++-.
T Consensus 129 ~----------~~~~A~~~gIp~~~~~~~-----~--~~r~~-----~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~ 186 (288)
T 3obi_A 129 E----------TFSGFDFGDIPFYHFPVN-----K--DTRRQ-----QEAAITALIAQTHTDLVVLARYMQILSDEMSAR 186 (288)
T ss_dssp G----------GSCCTTTTTCCEEECCCC-----T--TTHHH-----HHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHH
T ss_pred h----------HHHHHHHcCCCEEEeCCC-----c--ccHHH-----HHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhh
Confidence 1 235678999998865321 1 11111 112355667788999999998765444454433
No 69
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=43.78 E-value=28 Score=33.73 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=25.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD 129 (662)
++|+|++.|...|..++..+..+.... ...++++||-
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~ 37 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL----------SAPLTVLFVV 37 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH----------TCCEEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh----------CCcEEEEEEe
Confidence 379999999999988776655543321 1268888873
No 70
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=43.76 E-value=83 Score=32.80 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=55.5
Q ss_pred CCCCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCC----CCcHHHHHHHHHHHHHcCCe
Q 006087 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----EESKEEANIVSHRVSDMGIR 153 (662)
Q Consensus 78 ~i~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR----~eS~~Ea~~V~~~c~kLGIp 153 (662)
.+..+++..+|+|||.-=..+...|......+.. | .++..+.+|.-+- ++|-. .+.+.+....+|+
T Consensus 55 ~~~~~~~~~l~LsgGsTP~~ly~~L~~~~~~~id-------w-~~V~~f~~DEr~vp~d~~~Sn~--~~~~~l~~~v~i~ 124 (312)
T 3e15_A 55 LSKEGGHVVIGLSGGKTPIDVYKNIALVKDIKID-------T-SKLIFFIIDERYKRDDHKFSNY--NNIKFLFESLKIN 124 (312)
T ss_dssp HHSTTCCCEEEECCSHHHHHHHHHHTTCCSSCCC-------G-GGCEEEESEEECCTTCCTTCHH--HHHHHHHHHTTCC
T ss_pred hhhhCCCEEEEEeCCCCHHHHHHHHHHhhccCCC-------c-cceEEEEeeeecCCCCChHHHH--HHHHHHHhcCCCC
Confidence 3556678999999997666665555422111222 2 1677888884332 23432 2346777888886
Q ss_pred E--EEEEcccccCCCCCCCHHHHHHHHHHHH-HHHHHHH-cCCcccccc
Q 006087 154 C--EIVRCDWLDGRPKQGHLQEAARDMRYRL-FQKVCIQ-HQIGVLLIA 198 (662)
Q Consensus 154 ~--~i~~~~~~~~~~~~~niE~~AR~~RY~~-L~e~A~e-~G~d~LatG 198 (662)
- .+...+ . ..++++.|+ +|+. +.+...+ -|+|.+++|
T Consensus 125 ~~~~i~~~~---g---~~d~~~~a~--~Ye~~I~~~~~~~g~~DL~LLG 165 (312)
T 3e15_A 125 EKEQLYRPD---T---SKNIVECVR--DYNEKIKNMVKKYTKVDIAILG 165 (312)
T ss_dssp HHHHEECCC---T---TSCHHHHHH--HHHHHHHHHHHHHCSCCEEEEC
T ss_pred ccccEEcCC---C---CcCHHHHHH--HHHHHHHHHHhhcCCCcEEEEc
Confidence 2 222211 1 135666665 4543 3222222 467777765
No 71
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=41.18 E-value=1e+02 Score=31.34 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=69.7
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeEEEEEc---CC---hhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC
Q 006087 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVS---GG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134 (662)
Q Consensus 61 i~~~~~~~~f~~~i~~~~i~~~~kVLVAVS---GG---~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~ 134 (662)
.+.+++.+.+...+.... + ++|+- |+ .|.-++-.++..+++.| .++||-+.-+
T Consensus 107 ~s~~ei~~~l~~al~~vP---~---a~GvnNHmGS~~T~~~~~M~~vm~~L~~~g---------------L~FlDS~Ts~ 165 (261)
T 2qv5_A 107 DPAKVNIDRLHRSMAKIT---N---YTGVMNYLGGRFLAEQSALEPVMRDIGKRG---------------LLFLDDGSSA 165 (261)
T ss_dssp SCHHHHHHHHHHHHTTCC---C---CSEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECSCCT
T ss_pred CCHHHHHHHHHHHHHHCC---C---cEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCCCc
Confidence 446777777777665532 1 22222 33 36666666677666654 2579998866
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHH
Q 006087 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (662)
Q Consensus 135 eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET 207 (662)
.|. +.+.|+++|+|+...++-.. . ..+.....+ ....+.++|+++| ..|++||-..+-++.
T Consensus 166 ~S~-----a~~~A~~~gvp~~~rdvFLD---~-~~~~~~I~~--qL~~a~~~Ar~~G-~AIaIGhp~p~Ti~a 226 (261)
T 2qv5_A 166 QSL-----SGGIAKAISAPQGFADVLLD---G-EVTEASILR--KLDDLERIARRNG-QAIGVASAFDESIAA 226 (261)
T ss_dssp TCC-----HHHHHHHHTCCEEECSEETT---S-SCSHHHHHH--HHHHHHHHHHHHS-EEEEEEECCHHHHHH
T ss_pred ccH-----HHHHHHHcCCCeEEeeeecC---C-CCCHHHHHH--HHHHHHHHHHhcC-cEEEEeCCCHHHHHH
Confidence 553 56778899999876443211 1 122332222 2345778899998 579999988876543
No 72
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=40.99 E-value=1.2e+02 Score=29.93 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|-+||+.-.+. .++..+.. . ++.++.+|.-|+. + .+.++|+++|||++..+..
T Consensus 13 ~ri~vl~SG~gsnl~--all~~~~~-~---------~~~eI~~Vis~~~-a--------~~~~~A~~~gIp~~~~~~~-- 69 (215)
T 3da8_A 13 ARLVVLASGTGSLLR--SLLDAAVG-D---------YPARVVAVGVDRE-C--------RAAEIAAEASVPVFTVRLA-- 69 (215)
T ss_dssp EEEEEEESSCCHHHH--HHHHHSST-T---------CSEEEEEEEESSC-C--------HHHHHHHHTTCCEEECCGG--
T ss_pred cEEEEEEeCChHHHH--HHHHHHhc-c---------CCCeEEEEEeCCc-h--------HHHHHHHHcCCCEEEeCcc--
Confidence 479999999865443 33333321 1 2236777666663 2 3578899999998876432
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lm 210 (662)
.+ .+-++. -..+.+..++++.|.|+++....=.-+.++-
T Consensus 70 ~~----~~r~~~-----d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~ 108 (215)
T 3da8_A 70 DH----PSRDAW-----DVAITAATAAHEPDLVVSAGFMRILGPQFLS 108 (215)
T ss_dssp GS----SSHHHH-----HHHHHHHHHTTCCSEEEEEECCSCCCHHHHH
T ss_pred cc----cchhhh-----hHHHHHHHHhhCCCEEEEcCchhhCCHHHHh
Confidence 11 111211 1235667778999999998876544444443
No 73
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=40.79 E-value=56 Score=32.47 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=28.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeC
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDH 130 (662)
.++|+||+.|+..|..++..+..+.... ...+.++||..
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~ 209 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASRR----------NVDLVALHAWS 209 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHHT----------TCCEEEEEESC
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc----------CCEEEEEEEee
Confidence 4689999999999988777666554321 12688999854
No 74
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=40.19 E-value=1.9e+02 Score=27.99 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=55.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|-+||..+-+. .++..+.... +..++.+|.-|+ +++ .+.++|+++|||++...-.
T Consensus 4 ~ki~vl~sG~g~~~~--~~l~~l~~~~---------l~~~I~~Vit~~---~~~-----~v~~~A~~~gIp~~~~~~~-- 62 (212)
T 3av3_A 4 KRLAVFASGSGTNFQ--AIVDAAKRGD---------LPARVALLVCDR---PGA-----KVIERAARENVPAFVFSPK-- 62 (212)
T ss_dssp EEEEEECCSSCHHHH--HHHHHHHTTC---------CCEEEEEEEESS---TTC-----HHHHHHHHTTCCEEECCGG--
T ss_pred cEEEEEEECCcHHHH--HHHHHHHhCC---------CCCeEEEEEeCC---CCc-----HHHHHHHHcCCCEEEeCcc--
Confidence 379999999976433 3344443321 112566665553 222 4788999999998764321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L 209 (662)
.. .+-++.- ..+.+..++++.|.|+++....=.-+.++
T Consensus 63 ~~----~~~~~~~-----~~~~~~l~~~~~Dliv~a~y~~il~~~~l 100 (212)
T 3av3_A 63 DY----PSKAAFE-----SEILRELKGRQIDWIALAGYMRLIGPTLL 100 (212)
T ss_dssp GS----SSHHHHH-----HHHHHHHHHTTCCEEEESSCCSCCCHHHH
T ss_pred cc----cchhhhH-----HHHHHHHHhcCCCEEEEchhhhhCCHHHH
Confidence 10 1111111 12455667889999999876554444443
No 75
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=39.95 E-value=36 Score=33.49 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++++|+||+|||.-..-...++..+++.|
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~g 31 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQEE 31 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 35799999999999999999988887664
No 76
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=39.41 E-value=80 Score=32.42 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHcCC-------CCCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCC
Q 006087 63 MTKYREAFSRRMAMAGL-------KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (662)
Q Consensus 63 ~~~~~~~f~~~i~~~~i-------~~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~e 135 (662)
.+.+.+.|.+.-...++ ....||+|-+||+. ..|-.|+..+.... ++.++.+|.-||. +
T Consensus 62 ~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~---------l~~~i~~Visn~~---~ 127 (287)
T 3nrb_A 62 VNDFNSAFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGE---------LDMEVVGIISNHP---R 127 (287)
T ss_dssp -CHHHHHHHHHHGGGTCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTS---------SCCEEEEEEESSC---G
T ss_pred HHHHHHHHHHHHHHcCCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCC---------CCeEEEEEEeCCh---H
Confidence 45777777654443332 23468999999984 35555666554321 2347778777874 1
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHHH
Q 006087 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (662)
Q Consensus 136 S~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lmr 211 (662)
+ ++++|+++|||++..+... .+ |..--..+.+..++++.|.|+++....=.-+.++-.
T Consensus 128 ----a--~~~~A~~~gIp~~~~~~~~-------~~-----r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~ 185 (287)
T 3nrb_A 128 ----E--ALSVSLVGDIPFHYLPVTP-------AT-----KAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAF 185 (287)
T ss_dssp ----G--GCCCCCCTTSCEEECCCCG-------GG-----HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHH
T ss_pred ----H--HHHHHHHcCCCEEEEeccC-------cc-----hhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhh
Confidence 1 5567889999988653210 11 111112355677788999999998765444444433
No 77
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=39.11 E-value=1.1e+02 Score=29.87 Aligned_cols=89 Identities=11% Similarity=0.215 Sum_probs=50.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||++.+||..+-+. .++..+...+ ++.++.+|..|. ++. .+.++|+++|||+.+.+-. .
T Consensus 3 rI~vl~SG~g~~~~--~~l~~l~~~~---------~~~~i~~Vvs~~---~~~-----~~~~~A~~~gIp~~~~~~~--~ 61 (216)
T 2ywr_A 3 KIGVLVSGRGSNLQ--AIIDAIESGK---------VNASIELVISDN---PKA-----YAIERCKKHNVECKVIQRK--E 61 (216)
T ss_dssp EEEEEECSCCHHHH--HHHHHHHTTS---------SCEEEEEEEESC---TTC-----HHHHHHHHHTCCEEECCGG--G
T ss_pred EEEEEEeCCcHHHH--HHHHHHHhCC---------CCCeEEEEEeCC---CCh-----HHHHHHHHcCCCEEEeCcc--c
Confidence 79999999875432 2334333221 122555655554 222 3678999999998764321 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaD 202 (662)
. .+-++.- ..+.+..++.+.|.|+++....
T Consensus 62 ~----~~r~~~~-----~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 62 F----PSKKEFE-----ERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp S----SSHHHHH-----HHHHHHHHHTTCCEEEESSCCS
T ss_pred c----cchhhhh-----HHHHHHHHhcCCCEEEEeCchh
Confidence 1 1111111 2245566778999999887644
No 78
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=35.42 E-value=1.3e+02 Score=29.70 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=54.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||++.+||..+-+ ..++..+.... +..++.+|..|. ++. .+.++|+++|||+++.+-.
T Consensus 23 ~rI~~l~SG~g~~~--~~~l~~l~~~~---------~~~~I~~Vvt~~---~~~-----~~~~~A~~~gIp~~~~~~~-- 81 (229)
T 3auf_A 23 IRIGVLISGSGTNL--QAILDGCREGR---------IPGRVAVVISDR---ADA-----YGLERARRAGVDALHMDPA-- 81 (229)
T ss_dssp EEEEEEESSCCHHH--HHHHHHHHTTS---------SSEEEEEEEESS---TTC-----HHHHHHHHTTCEEEECCGG--
T ss_pred cEEEEEEeCCcHHH--HHHHHHHHhCC---------CCCeEEEEEcCC---Cch-----HHHHHHHHcCCCEEEECcc--
Confidence 48999999997543 23334333221 112566665553 222 3678999999998764321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L 209 (662)
.. .+-++.- ..+.+..++.+.|.|+++...-=.-+.++
T Consensus 82 ~~----~~r~~~~-----~~~~~~l~~~~~Dliv~agy~~IL~~~~l 119 (229)
T 3auf_A 82 AY----PSRTAFD-----AALAERLQAYGVDLVCLAGYMRLVRGPML 119 (229)
T ss_dssp GS----SSHHHHH-----HHHHHHHHHTTCSEEEESSCCSCCCHHHH
T ss_pred cc----cchhhcc-----HHHHHHHHhcCCCEEEEcChhHhCCHHHH
Confidence 10 1111111 22455667789999999876543334443
No 79
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=34.23 E-value=1.9e+02 Score=29.07 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=67.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCeEEEEEc---CC---hhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC
Q 006087 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVS---GG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134 (662)
Q Consensus 61 i~~~~~~~~f~~~i~~~~i~~~~kVLVAVS---GG---~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~ 134 (662)
.+.+++...+...+....- ++|+. |+ .|.-++-.++..+++.| .++||-+.-+
T Consensus 80 ~s~~ei~~~l~~al~~vP~------a~GvnNHmGS~~T~~~~~m~~vm~~l~~~g---------------L~fvDS~Ts~ 138 (245)
T 2nly_A 80 LSVGEVKSRVRKAFDDIPY------AVGLNNHMGSKIVENEKIMRAILEVVKEKN---------------AFIIDSGTSP 138 (245)
T ss_dssp CCHHHHHHHHHHHHHHSTT------CCEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECCCCS
T ss_pred CCHHHHHHHHHHHHHHCCC------cEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCCCc
Confidence 3467788888877776421 22332 22 26666666677666654 2579998765
Q ss_pred CcHHHHHHHHHHHHHcCCeEEEEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccCh
Q 006087 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (662)
Q Consensus 135 eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDD 203 (662)
.|. +.+.|+++|+|+...++-. .....+.....+.+ ..+.++|+++| ..|++||-..+
T Consensus 139 ~S~-----a~~~A~~~gvp~~~rdvFL---D~~~~~~~~I~~ql--~~a~~~A~~~G-~aIaIGhp~p~ 196 (245)
T 2nly_A 139 HSL-----IPQLAEELEVPYATRSIFL---DNTHSSRKEVIKNM--RKLAKKAKQGS-EPIGIGHVGVR 196 (245)
T ss_dssp SCS-----HHHHHHHTTCCEEECCEES---CCTTCCHHHHHHHH--HHHHHHHHTTS-CCEEEEECSTT
T ss_pred ccH-----HHHHHHHcCCCeEEeeEEC---CCCCCCHHHHHHHH--HHHHHHHhhcC-cEEEEECCCCC
Confidence 553 5677889999987644321 11012333333333 34778888888 46899998776
No 80
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=34.07 E-value=53 Score=32.61 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=26.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD 129 (662)
.++|+|++.|...|..++..+..+.... ...++++||-
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~ 56 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR----------KIPLTLVHAV 56 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH----------TCCEEEEEEC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc----------CCcEEEEEEe
Confidence 4789999999999988776655443321 1268888874
No 81
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=31.38 E-value=2.1e+02 Score=28.91 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEe--CCCCC---CcHHHHHHHHHHHHHcCCeEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVD--HGLRE---ESKEEANIVSHRVSDMGIRCE 155 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVD--HGLR~---eS~~Ea~~V~~~c~kLGIp~~ 155 (662)
+....||+|||.-=..+...|... ...... | .++.++.+| .|+-+ +|. .....+.++++++++..
T Consensus 32 ~~~~~lglsgGsTp~~~~~~L~~~~~~~~i~-------~-~~v~v~~lDEr~gv~~~~~~Sn-~~~~~~~l~~~~~~~~~ 102 (289)
T 1ne7_A 32 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLS-------F-KYVKTFNMDEYVGLPRDHPESY-HSFMWNNFFKHIDIHPE 102 (289)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHHHTTSCC-------C-TTEEEEESEEETTSCTTSTTSH-HHHHHHHTGGGSCCCGG
T ss_pred CCCEEEEEcCCccHHHHHHHHHhhhhccCCC-------c-hheEEEeCceeecCCCCcHHHH-HHHHHHHhhccCCCCHH
Confidence 344899999997555555444322 111221 2 168888899 66642 332 33345566778887654
Q ss_pred EEEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 006087 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (662)
Q Consensus 156 i~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatG 198 (662)
.+.... ....+.++.| .+|+...+.+ .++|.+++|
T Consensus 103 ~i~~p~----~~~~~~e~~~--~~ye~~i~~~--~~~Dl~lLG 137 (289)
T 1ne7_A 103 NTHILD----GNAVDLQAEC--DAFEEKIKAA--GGIELFVGG 137 (289)
T ss_dssp GEECCC----TTCSSHHHHH--HHHHHHHHHT--TSCSEEEEC
T ss_pred HEecCC----CCCCCHHHHH--HHHHHHHHhc--CCCCEEEEc
Confidence 333211 0112566655 4454433221 356766665
No 82
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=31.16 E-value=60 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++|+||+|||....-...++..+++.|
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~g 28 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEELD 28 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 489999999999888888888776654
No 83
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=29.31 E-value=1.9e+02 Score=28.40 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcc
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
+..||+|-+||+..-+. .++..+.. + +++.++.+|.-|+. +.. ..++|+++|||++..+-.
T Consensus 7 ~~~ri~vl~SG~gsnl~--all~~~~~-~--------~~~~~I~~Vis~~~---~a~-----~l~~A~~~gIp~~~~~~~ 67 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLE--ALAKAFST-E--------ESSVVISCVISNNA---EAR-----GLLIAQSYGIPTFVVKRK 67 (215)
T ss_dssp CCEEEEEEESSCCHHHH--HHHHHTCC-C---------CSEEEEEEEESCT---TCT-----HHHHHHHTTCCEEECCBT
T ss_pred CCCEEEEEEECCcHHHH--HHHHHHHc-C--------CCCcEEEEEEeCCc---chH-----HHHHHHHcCCCEEEeCcc
Confidence 34689999999854433 23333321 1 12336777766752 221 357889999998765311
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHHH
Q 006087 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (662)
Q Consensus 161 ~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~Lm 210 (662)
. .. . ..+.+..++++.|.|+++....=.-+.++-
T Consensus 68 -----~-~~---~-------~~~~~~L~~~~~Dlivlagy~~IL~~~~l~ 101 (215)
T 3kcq_A 68 -----P-LD---I-------EHISTVLREHDVDLVCLAGFMSILPEKFVT 101 (215)
T ss_dssp -----T-BC---H-------HHHHHHHHHTTCSEEEESSCCSCCCHHHHH
T ss_pred -----c-CC---h-------HHHHHHHHHhCCCEEEEeCCceEeCHHHHh
Confidence 0 01 1 345566778899999999876544444443
No 84
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=27.50 E-value=1.1e+02 Score=29.45 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhC-CCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEc
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~-g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~ 159 (662)
+.++|+||+.|+.+|..++..+..+... + ..+.++||...- .+..+..+.+.+.+...|++..+.-.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~-----------a~l~ll~v~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~ 220 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALG-----------LGVRVVSVHEDP-ARAEAWALEAEAYLRDHGVEASALVL 220 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHT-----------CCEEEEEECSSH-HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCC-----------CEEEEEEEcCcH-HHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3478999999999998776655444321 2 158888986431 11122334456666777888654321
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 006087 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (662)
Q Consensus 160 ~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGH 199 (662)
.+++. +.+.+.+++. +.|++|+
T Consensus 221 --------~g~~~--------~~i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 221 --------GGDAA--------DHLLRLQGPG--DLLALGA 242 (268)
T ss_dssp --------CSCHH--------HHHHHHCCTT--EEEEEEC
T ss_pred --------CCChH--------HHHHHHHHhC--CEEEECC
Confidence 12222 2245566665 8999998
No 85
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=26.41 E-value=48 Score=31.75 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=22.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++|+||+|||....-...++..+++.|
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~g 29 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQHF 29 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 579999999999998888888776543
No 86
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.86 E-value=57 Score=31.12 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCC
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g 109 (662)
++|+||+|||.-..-...++..+++.|
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~~g 32 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKSKF 32 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTTTC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHCC
Confidence 689999999999888788887776544
No 87
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.61 E-value=1.5e+02 Score=25.87 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=39.7
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCC-------------CcHHHHHHHHHHH
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------------ESKEEANIVSHRV 147 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~-------------eS~~Ea~~V~~~c 147 (662)
+..+|++.++||.=|..|+.-+++..++ +|+ ++.+..+.++--. .-.-....+++.|
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~--------~gi--~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~ 74 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANL--------TEV--RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDA 74 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHH--------HTC--SEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH--------CCC--ceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHh
Confidence 4568999999998777766655544322 123 3333334443111 1111234577888
Q ss_pred HHcCCeEEEEE
Q 006087 148 SDMGIRCEIVR 158 (662)
Q Consensus 148 ~kLGIp~~i~~ 158 (662)
...|+|+.+++
T Consensus 75 ~~~~ipV~vI~ 85 (108)
T 3nbm_A 75 ERLGIQIVATR 85 (108)
T ss_dssp TTTTCEEEECC
T ss_pred hhcCCcEEEeC
Confidence 88899988765
No 88
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=24.32 E-value=45 Score=32.30 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhC
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTG 108 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~ 108 (662)
+++|+||+|||.-..-...++..+++.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~ 34 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSF 34 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC
Confidence 579999999999888777777776544
No 89
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=23.74 E-value=50 Score=32.21 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCChhHH-HHHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSM-ALCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSm-aLL~LL~~~~~~g 109 (662)
.+++|+||+|||.-.. -.+.++..+++.|
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g 35 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELG 35 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCC
Confidence 4589999999998777 5566777776654
No 90
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=23.69 E-value=5.1e+02 Score=25.12 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=55.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|-+||+.--+. .++..+.. + +++.++.+|.-|+ ++.. ..++|+++|||+++.+...
T Consensus 8 ~ri~vl~SG~gsnl~--all~~~~~-~--------~l~~~I~~Visn~---~~a~-----~l~~A~~~gIp~~~~~~~~- 67 (209)
T 4ds3_A 8 NRVVIFISGGGSNME--ALIRAAQA-P--------GFPAEIVAVFSDK---AEAG-----GLAKAEAAGIATQVFKRKD- 67 (209)
T ss_dssp EEEEEEESSCCHHHH--HHHHHHTS-T--------TCSEEEEEEEESC---TTCT-----HHHHHHHTTCCEEECCGGG-
T ss_pred ccEEEEEECCcHHHH--HHHHHHHc-C--------CCCcEEEEEEECC---cccH-----HHHHHHHcCCCEEEeCccc-
Confidence 479999999854433 23333322 1 1233677776674 2221 2578999999987654211
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L 209 (662)
. .+-++. -..+.+..++++.|.|+++....=.-+.++
T Consensus 68 -~----~~r~~~-----d~~~~~~l~~~~~Dliv~agy~~il~~~~l 104 (209)
T 4ds3_A 68 -F----ASKEAH-----EDAILAALDVLKPDIICLAGYMRLLSGRFI 104 (209)
T ss_dssp -S----SSHHHH-----HHHHHHHHHHHCCSEEEESSCCSCCCHHHH
T ss_pred -c----CCHHHH-----HHHHHHHHHhcCCCEEEEeccccCcCHHHH
Confidence 1 111111 134556677889999999987654434443
No 91
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=23.56 E-value=57 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCChhHHH-HHHHHHhhHhCC
Q 006087 81 PHHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSma-LL~LL~~~~~~g 109 (662)
.+++|+||+|||.-..- .+.++..+++.|
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g 33 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEG 33 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhCC
Confidence 35799999999975442 456677766654
No 92
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=23.21 E-value=3e+02 Score=27.96 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=51.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhh-HhCCCCCCCCCCCCcCcEEEEEEeC--CCCCCcHH-HHHHHH-HHHHHcCCeEEE
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDH--GLREESKE-EANIVS-HRVSDMGIRCEI 156 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~-~~~g~~~~~~~~g~~~~L~AvhVDH--GLR~eS~~-Ea~~V~-~~c~kLGIp~~i 156 (662)
+++..+|+|||.-=..+...|.+. ...+..+ .++..+.+|- |+-++.++ -..+++ .+....+|+-.-
T Consensus 53 ~~~~~l~LsgGsTP~~~y~~L~~~~~~~~idw--------~~v~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i~~~~ 124 (289)
T 3hn6_A 53 ENPFILGLPTGSSPIGMYKNLIELNKNKKISF--------QNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKEN 124 (289)
T ss_dssp TBCEEEEECCSSTTHHHHHHHHHHHHTTSCCC--------TTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGGG
T ss_pred CCcEEEEECCCccHHHHHHHHHHhHhhcCCCc--------hheEEEeCcceecCCCCcHHHHHHHHHHHhhccCCCCHHH
Confidence 446899999997666665555432 2223322 1678888886 55433221 122333 344566665322
Q ss_pred EEcccccCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCcccccc
Q 006087 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIA 198 (662)
Q Consensus 157 ~~~~~~~~~~~~~niE~~AR~~RY~~L~e~A~e~-G~d~LatG 198 (662)
+.. .. ....++++.|+ +|+.. .++. ++|.+++|
T Consensus 125 i~~--~~--~~~~d~~~~a~--~Ye~~---i~~~~~~Dl~lLG 158 (289)
T 3hn6_A 125 INI--LN--GNASNLKKECE--EYEKK---IKSFGGIMLFVGG 158 (289)
T ss_dssp EEC--CC--TTCSSHHHHHH--HHHHH---HHHTTSCSEEEEE
T ss_pred eec--CC--CCCCCHHHHHH--HHHHH---HhhcCCCCEEEEc
Confidence 211 00 11135677765 35432 2233 67888775
No 93
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=22.90 E-value=4.4e+02 Score=25.44 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=54.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEccccc
Q 006087 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (662)
Q Consensus 84 kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~~ 163 (662)
||+|-+||+.-. |-.++..+.... ++.++.+|..|.. +. .+.++|+++|||++..+-. .
T Consensus 2 ri~vl~Sg~gsn--l~ali~~~~~~~---------~~~~i~~Vis~~~---~~-----~~~~~A~~~gIp~~~~~~~--~ 60 (212)
T 1jkx_A 2 NIVVLISGNGSN--LQAIIDACKTNK---------IKGTVRAVFSNKA---DA-----FGLERARQAGIATHTLIAS--A 60 (212)
T ss_dssp EEEEEESSCCHH--HHHHHHHHHTTS---------SSSEEEEEEESCT---TC-----HHHHHHHHTTCEEEECCGG--G
T ss_pred EEEEEEECCcHH--HHHHHHHHHcCC---------CCceEEEEEeCCC---ch-----HHHHHHHHcCCcEEEeCcc--c
Confidence 789999998732 333444433221 1236666666642 22 3678999999998764311 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH
Q 006087 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (662)
Q Consensus 164 ~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L 209 (662)
. .+-++.- ..+.+..++.+.|.|+++...-=.-+.++
T Consensus 61 ~----~~r~~~~-----~~~~~~l~~~~~Dliv~agy~~il~~~~l 97 (212)
T 1jkx_A 61 F----DSREAYD-----RELIHEIDMYAPDVVVLAGFMRILSPAFV 97 (212)
T ss_dssp C----SSHHHHH-----HHHHHHHGGGCCSEEEESSCCSCCCHHHH
T ss_pred c----cchhhcc-----HHHHHHHHhcCCCEEEEeChhhhCCHHHH
Confidence 0 1111111 22455667789999999876543334443
No 94
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=22.25 E-value=3.6e+02 Score=26.32 Aligned_cols=96 Identities=13% Similarity=0.165 Sum_probs=55.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCeEEEEEcccc
Q 006087 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (662)
Q Consensus 83 ~kVLVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVDHGLR~eS~~Ea~~V~~~c~kLGIp~~i~~~~~~ 162 (662)
.||+|-+||+.--+. .++..+. .+ ++.++.+|.-|+ ++. ...++|+++|||++..+..
T Consensus 6 ~riavl~SG~Gsnl~--all~~~~-~~---------~~~eI~~Vis~~---~~a-----~~~~~A~~~gIp~~~~~~~-- 63 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQ--AIIGAIQ-KG---------LAIEIRAVISNR---ADA-----YGLKRAQQADIPTHIIPHE-- 63 (215)
T ss_dssp EEEEEEESSCCHHHH--HHHHHHH-TT---------CSEEEEEEEESC---TTC-----HHHHHHHHTTCCEEECCGG--
T ss_pred cEEEEEEeCCcHHHH--HHHHHHH-cC---------CCCEEEEEEeCC---cch-----HHHHHHHHcCCCEEEeCcc--
Confidence 579999999754333 2333332 21 123677766664 232 2367899999998765321
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHcCCcccccccccChhhHHHH
Q 006087 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (662)
Q Consensus 163 ~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGHhaDDqaET~L 209 (662)
.. .+-++. -..+.+..++++.|.|+++....=.-+.++
T Consensus 64 ~~----~~r~~~-----d~~~~~~l~~~~~Dliv~agy~~il~~~~l 101 (215)
T 3tqr_A 64 EF----PSRTDF-----ESTLQKTIDHYDPKLIVLAGFMRKLGKAFV 101 (215)
T ss_dssp GS----SSHHHH-----HHHHHHHHHTTCCSEEEESSCCSCCCHHHH
T ss_pred cc----CchhHh-----HHHHHHHHHhcCCCEEEEccchhhCCHHHH
Confidence 11 111111 123566778899999999887654444444
No 95
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.76 E-value=49 Score=32.35 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhHh
Q 006087 81 PHHRIALGVSGGPDSMALCVLTAGWKT 107 (662)
Q Consensus 81 ~~~kVLVAVSGG~DSmaLL~LL~~~~~ 107 (662)
.+.+|+||+|||....-...++..+++
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~ 44 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLD 44 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC-
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhc
Confidence 357899999999998888788777654
No 96
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=21.36 E-value=2.9e+02 Score=26.52 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=50.1
Q ss_pred EEEEcCChhHHHHHHHHHhhHhCCCCCCCCCCCCcCcEEEEEEe--CCCCC---CcHHHHHHHHHHHHHcCCeEEEEEcc
Q 006087 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD--HGLRE---ESKEEANIVSHRVSDMGIRCEIVRCD 160 (662)
Q Consensus 86 LVAVSGG~DSmaLL~LL~~~~~~g~~~~~~~~g~~~~L~AvhVD--HGLR~---eS~~Ea~~V~~~c~kLGIp~~i~~~~ 160 (662)
.||+|||.-=..+...|. ..... | .++.++.+| .|+-+ +| ......+.++++++++.....
T Consensus 31 ~i~ls~G~T~~~~~~~L~---~~~~~-------~-~~v~v~~ldEr~gv~~~~~~s-n~~~~~~~l~~~~~~~~~~~~-- 96 (234)
T 2ri0_A 31 TLGLATGSTPLELYKEIR---ESHLD-------F-SDMVSINLDEYVGLSADDKQS-YAYFMKQNLFAAKPFKKSYLP-- 96 (234)
T ss_dssp EEEECCSSTTHHHHHHHH---TSCCC-------C-TTCEEEESEEETTCCTTSTTS-HHHHHHHHTTTTSCCSEEECC--
T ss_pred EEEEcCCCCHHHHHHHHH---hcCCC-------h-hheEEEeCeeecCCCCCChHH-HHHHHHHHHhccCCCcHhhcC--
Confidence 899999965555544443 21111 1 156778888 46642 33 233445667788899876321
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 006087 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (662)
Q Consensus 161 ~~~~~~~~~niE~~AR~~RY~~L~e~A~e~G~d~LatGH 199 (662)
. +...+.++.| .+|+...+. .++|.+++|=
T Consensus 97 ~----~~~~~~~~~~--~~y~~~i~~---~~~Dl~llGi 126 (234)
T 2ri0_A 97 N----GLAADLAKET--EYYDQILAQ---YPIDLQILGI 126 (234)
T ss_dssp C----TTCSCHHHHH--HHHHHHHHH---SCCSEEEECC
T ss_pred C----CCCCCHHHHH--HHHHHHHHh---CCCCEEEEcc
Confidence 1 1123566544 445443332 5677777663
No 97
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=20.38 E-value=85 Score=30.82 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhHhC
Q 006087 82 HHRIALGVSGGPDSMALCVLTAGWKTG 108 (662)
Q Consensus 82 ~~kVLVAVSGG~DSmaLL~LL~~~~~~ 108 (662)
+.+|+||+|||.-..-...++..+++.
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~~ 45 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTEW 45 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHTT
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhcC
Confidence 578999999999888777777777543
Done!