BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006089
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 166 bits (420), Expect = 4e-41, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
+G VPGVE+GD F +RME+ L+G+H S +GIDYM D E VA SI+SSGGY+D
Sbjct: 3 IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
++SD+LIY+GQGGN +K E DQ+L GNLAL+ S+ + + VRVIRG+K+ QSS
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
K YVYDGLY V+E W E G G +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 160 bits (404), Expect = 3e-39, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
+G VPGVE+GD F +R E+ L+G+H S +GIDY D E VA SI+SSGGY+D
Sbjct: 3 IGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYX---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
++SD+LIY+GQGGN +K E DQ+L GNLAL+ S+ + + VRVIRG+K+ QSS
Sbjct: 60 DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
K YVYDGLY V+E W E G G +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 150/297 (50%), Gaps = 45/297 (15%)
Query: 385 EAIPIALINDVDDEKGPAY-FTYLTTVKYSKSFRLTQPSF--GCNCYS--ACGPGNPN-C 438
E + L+N+VDDE P+ F +++ + ++ P+F GCNC S C NP+ C
Sbjct: 26 EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRC 85
Query: 439 SCVQK--NGGDFPYTANG-VLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTK 495
C+ F Y A G V +IYEC C C+ +C NRV Q G + L++FKTK
Sbjct: 86 ECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK 145
Query: 496 DRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNED---YVFDTTRTYDSFKWNY 552
++GWG+RSL AGTFI Y GEV+ +A + + ++D Y+FD D F
Sbjct: 146 EKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDL----DMF---- 197
Query: 553 EPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFV 612
DD S+ T + A+N G+V+RF NHSCSPN+ + + +
Sbjct: 198 -------DDASEYT----------VDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIY 240
Query: 613 HVAFFAMRHVPPMTELTYDYG--------ISKSDGGNYEPHRKKKCLCGTLKCRGYF 661
+AFFA++ + P+ ELT+DY S+ N +++C CG+ CRG+
Sbjct: 241 DLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 46/293 (15%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSA 430
++ D++ G E IPI +N VD E P+ + Y++ T + +T + C C
Sbjct: 30 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDD 88
Query: 431 CGPGNPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGL 485
C + NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL
Sbjct: 89 CS--SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGL 145
Query: 486 KVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTY 545
+ RL +++T+D GWG+RSL I GTF+CEY GE++ +A E S Y+FD
Sbjct: 146 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDS---YLFD----- 197
Query: 546 DSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFE 605
+++ D E Y I A+ GNV+RF+NH C PN+ +
Sbjct: 198 -----------LDNKD----GEVY------CIDARFYGNVSRFINHHCEPNLVPVRVFMA 236
Query: 606 NNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
+ + F +AFF+ R + +L +DYG D + C CG+ KCR
Sbjct: 237 HQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG----KLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 46/289 (15%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 88
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 89 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 147
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFK 549
+++T+D GWG+RSL I GTF+CEY GE++ +A E S Y+FD
Sbjct: 148 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDS---YLFD--------- 195
Query: 550 WNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNE 609
+++ D E Y I A+ GNV+RF+NH C PN+ + + +
Sbjct: 196 -------LDNKD----GEVY------CIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDL 238
Query: 610 SFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
F +AFF+ R + +L +DYG D + C CG+ KCR
Sbjct: 239 RFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG----KLFSCRCGSPKCR 283
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 145/293 (49%), Gaps = 46/293 (15%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSA 430
++ D++ G E IPI +N VD E P+ + Y++ T + +T + C C
Sbjct: 4 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDD 62
Query: 431 CGPGNPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGL 485
C + NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL
Sbjct: 63 CS--SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGL 119
Query: 486 KVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTY 545
+ RL +++T+D GWG+RSL I GTF+CEY GE++ +A E S Y+FD
Sbjct: 120 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDS---YLFD----- 171
Query: 546 DSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFE 605
+++ D E Y I A+ GNV+RF+NH C PN+ +
Sbjct: 172 -----------LDNKD----GEVY------CIDARFYGNVSRFINHHCEPNLVPVRVFMA 210
Query: 606 NNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
+ + F +AFF+ R + +L +DYG D + C CG+ KCR
Sbjct: 211 HQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG----KLFSCRCGSPKCR 259
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 54/297 (18%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT------TVKYSKSFRLTQPSFGCNCY 428
+I D++ G E +PI +N VD E P + Y++ T+ ++ Q C C
Sbjct: 9 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQ---HCTCV 65
Query: 429 SACGPGNPNCSCVQKNGGDFPYTANGVLVSR-----KPLIYECGPSCPCNRDCKNRVSQT 483
C + NC C Q + + Y +G L+ PLI+EC +C C R+CKNRV Q+
Sbjct: 66 DDCS--SSNCLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 122
Query: 484 GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA--RQDGEGSNEDYVFDT 541
G+KVRL +++T GWG+R+L I GTFICEY GE++ +A R+D + Y+FD
Sbjct: 123 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED-----DSYLFD- 176
Query: 542 TRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQP 601
+++ D E Y I A+ GN++RF+NH C PN+
Sbjct: 177 ---------------LDNKD----GEVY------CIDARYYGNISRFINHLCDPNIIPVR 211
Query: 602 IIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
+ + + F +AFF+ R + EL +DYG D + + C CG+ KC+
Sbjct: 212 VFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS----KYFTCQCGSEKCK 264
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 54/297 (18%)
Query: 375 LILPDLSSGAEAIPIALINDVDDEKGPAYFTYLT------TVKYSKSFRLTQPSFGCNCY 428
+I D++ G E +PI +N VD E P + Y++ T+ ++ Q C C
Sbjct: 11 IICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQ---HCTCV 67
Query: 429 SACGPGNPNCSCVQKNGGDFPYTANGVLVSR-----KPLIYECGPSCPCNRDCKNRVSQT 483
C + NC C Q + + Y +G L+ PLI+EC +C C R+CKNRV Q+
Sbjct: 68 DDCS--SSNCLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQS 124
Query: 484 GLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA--RQDGEGSNEDYVFDT 541
G+KVRL +++T GWG+R+L I GTFICEY GE++ +A R+D + Y+FD
Sbjct: 125 GIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRED-----DSYLFD- 178
Query: 542 TRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQP 601
+++ D E Y I A+ GN++RF+NH C PN+
Sbjct: 179 ---------------LDNKD----GEVY------CIDARYYGNISRFINHLCDPNIIPVR 213
Query: 602 IIFENNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
+ + + F +AFF+ R + EL +DYG D + + C CG+ KC+
Sbjct: 214 VFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKS----KYFTCQCGSEKCK 266
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 142/289 (49%), Gaps = 46/289 (15%)
Query: 379 DLSSGAEAIPIALINDVDDEKGPAYFTYLT----TVKYSKSFRLTQPSFGCNCYSACGPG 434
D++ G E IPI +N VD E P+ + Y++ T + +T + C C C
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCS-- 89
Query: 435 NPNCSCVQKNGGDFPYTANGVLV-----SRKPLIYECGPSCPCNRDCKNRVSQTGLKVRL 489
+ NC C Q + + Y +G L+ + PLI+EC +C C R+C+NRV Q GL+ RL
Sbjct: 90 SSNCMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 148
Query: 490 DVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFK 549
+++T+D GWG+RSL I GTF+CEY GE++ +A E S Y+FD
Sbjct: 149 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDS---YLFD--------- 196
Query: 550 WNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNE 609
+++ D E Y I A+ GNV+RF+NH C PN+ + + +
Sbjct: 197 -------LDNKD----GEVY------CIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDL 239
Query: 610 SFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCR 658
F +AFF+ R + +L +D G D + C CG+ KCR
Sbjct: 240 RFPRIAFFSTRLIEAGEQLGFDAGERFWDIKG----KLFSCRCGSPKCR 284
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 43/305 (14%)
Query: 387 IPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSF--GCNCYSACGPGNPNCSCVQKN 444
+PI+++N DD F ++ K+ + SF GC+C S C C+ +
Sbjct: 10 LPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEM 69
Query: 445 GGD-------------FPYTANG---------VLVSRKPLIYECGPSCPCNRDCKNRVSQ 482
D F Y + G VL S++P IYEC C C++DC NRV +
Sbjct: 70 APDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEP-IYECHQGCACSKDCPNRVVE 128
Query: 483 TGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA-RQDGEGSNEDYVFDT 541
G V L +F+TKDRGWG++ I+ G F+ Y GE++ +A R+ E +
Sbjct: 129 RGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAEST-------I 181
Query: 542 TRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQP 601
R D + + L + DP D+ + PL + + + RF+NHSC PN+
Sbjct: 182 ARRKDVYLF----ALDKFSDP-DSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFA 236
Query: 602 IIFENNNESFVHVAFFAMRHVPPMTELTYDY--GISKSDGGNYEPHR---KKKCLCGTLK 656
+ ++ ++ +A FA++ +P TELT+DY G++ + ++P + KCLCGT K
Sbjct: 237 RVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAK 296
Query: 657 CRGYF 661
CRGY
Sbjct: 297 CRGYL 301
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 69/321 (21%)
Query: 362 IQRWKDGMSGRV---GLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRL 418
+QRW+D ++ R G+I + N VD E P+ F Y+ K + L
Sbjct: 27 LQRWQDELNRRKNHKGMIFVE-------------NTVDLEGPPSDFYYINEYKPAPGISL 73
Query: 419 T-QPSFGCNC----YSACGPGNPNCSCVQKNGGDFPYTANG-VLVSRKPLIYECGPSCPC 472
+ +FGC+C + C P + G Y N + + IYEC C C
Sbjct: 74 VNEATFGCSCTDCFFQKCCPA--------EAGVLLAYNKNQQIKIPPGTPIYECNSRCQC 125
Query: 473 NRDCKNRVSQTGLKVRLDVFKTKD-RGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGE 531
DC NR+ Q G + L +F+T + RGWG+++L I+ +F+ EY GEV+ +A + G+
Sbjct: 126 GPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQ 185
Query: 532 GSNED---YVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARF 588
+ Y+FD D F + A GNV+ F
Sbjct: 186 FYDNKGITYLFDLDYESDEF---------------------------TVDAARYGNVSHF 218
Query: 589 MNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDY-----GISKSDGGNYE 643
+NHSC PN+ + +N + +A F+ R + ELT+DY G SD ++
Sbjct: 219 VNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHS 278
Query: 644 PHRKK---KCLCGTLKCRGYF 661
P +K+ C CG + CRGY
Sbjct: 279 PAKKRVRTVCKCGAVTCRGYL 299
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 118/259 (45%), Gaps = 44/259 (16%)
Query: 419 TQPSF-GCNCY-SACGPGNPNCSCVQKNGGDFPYTANGVLVS-------RKPLIYECGPS 469
TQ +F GC C + C PG CSC++ Y N L +P ++EC
Sbjct: 55 TQITFPGCICVKTPCLPGT--CSCLRHGEN---YDDNSCLRDIGSGGKYAEP-VFECNVL 108
Query: 470 CPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQD 529
C C+ C+NRV Q GL+ VFKT +GWGLR+L+ I G F+CEYAGEV+
Sbjct: 109 CRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVL-------- 160
Query: 530 GEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFM 589
G + + T++ DS NY + E E + + +GN+ RF+
Sbjct: 161 GFSEVQRRIHLQTKS-DS---NYIIAIREHVYNGQVMETF-------VDPTYIGNIGRFL 209
Query: 590 NHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYG-------ISKSDGGNY 642
NHSC PN+ P+ ++ +A FA + + P EL+YDY +S S
Sbjct: 210 NHSCEPNLLMIPVRIDS---MVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLD 266
Query: 643 EPHRKKKCLCGTLKCRGYF 661
+K C CG C +
Sbjct: 267 HGKLRKPCYCGAKSCTAFL 285
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 110/272 (40%), Gaps = 57/272 (20%)
Query: 399 KGPAYF------TYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTA 452
K P YF YLT K +KS R + C C + K+ A
Sbjct: 35 KMPCYFDLIEENVYLTERKKNKSHRDIK-RMQCECTP-----------LSKDERAQGEIA 82
Query: 453 NGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTF 512
G + L+ EC CP C NR Q ++V T+ +GWGLR+ + + TF
Sbjct: 83 CGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTF 142
Query: 513 ICEYAGEVVD--KFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYD 570
+ EY GEV+D +FKAR N++ + Y L D+
Sbjct: 143 VLEYCGEVLDHKEFKARVKEYARNKNIHY------------YFMALKNDE---------- 180
Query: 571 LPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTY 630
+I A GN +RFMNHSC PN Q + V FF + VP +ELT+
Sbjct: 181 -----IIDATQKGNCSRFMNHSCEPNCETQKWTVNGQ----LRVGFFTTKLVPSGSELTF 231
Query: 631 DYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG 662
DY + +KC CG+ CRGY G
Sbjct: 232 DYQFQRYG------KEAQKCFCGSANCRGYLG 257
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 41/207 (19%)
Query: 460 KPLIYECGP-SCPCNRDCKNRVSQTGLKVR-LDVFKTKDRGWGLRSLDPIRAGTFICEYA 517
+ + EC P +CPC C N+ Q V+ L+ F+ +++GWG+R+ +P++AG FI EY
Sbjct: 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYL 104
Query: 518 GEVV--DKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPL 575
GEVV +F+ R + N D + N + G +
Sbjct: 105 GEVVSEQEFRNRMIEQYHNHS---------DHYCLNLDSG-------------------M 136
Query: 576 VISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHVAFFAMRHVPPMTELTYDYGIS 635
VI + +GN ARF+NHSC PN Q + +A++ +P TELTYDY
Sbjct: 137 VIDSYRMGNEARFINHSCDPNCEMQKWSV----NGVYRIGLYALKDMPAGTELTYDYNFH 192
Query: 636 KSDGGNYEPHRKKKCLCGTLKCRGYFG 662
++ +++ C CG KCRG G
Sbjct: 193 -----SFNVEKQQLCKCGFEKCRGIIG 214
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 39/228 (17%)
Query: 436 PNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPS-CPCNRDCKNRVSQTGLKVRLDVFKT 494
P C+C K + P + ++R L+YEC P+ CP C+N+ +++F+T
Sbjct: 43 PRCNC--KATDENPCGIDSECINRM-LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRT 99
Query: 495 KDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTYDSFKWNYEP 554
RGWGLR+ I+ G F+ EY GE++D+ + R + E D T Y
Sbjct: 100 LQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQE---HDITNFY--------- 147
Query: 555 GLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFENNNESFVHV 614
L D D +I A GN ARFMNH C PN Q + V
Sbjct: 148 MLTLDKD-------------RIIDAGPKGNYARFMNHCCQPNCETQKWSVNGD----TRV 190
Query: 615 AFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYFG 662
FA+ + TELT++Y + G K C CG C G+ G
Sbjct: 191 GLFALSDIKAGTELTFNYNLECLGNG------KTVCKCGAPNCSGFLG 232
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 200 GVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAE 259
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD +
Sbjct: 15 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDVD 67
Query: 260 DSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRRAS 300
+ Y+G GG R EQ+ DQKL N AL + R
Sbjct: 68 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 127
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAF 356
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG +
Sbjct: 128 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPW 186
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 200 GVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAE 259
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD +
Sbjct: 7 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDVD 59
Query: 260 DSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRRAS 300
+ Y+G GG R EQ+ DQKL N AL + R
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAF 356
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG +
Sbjct: 120 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPW 178
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 200 GVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAE 259
G +PG+ +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD +
Sbjct: 10 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDVD 62
Query: 260 DSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRRAS 300
+ Y+G GG R EQ+ DQKL N AL + R
Sbjct: 63 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 122
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAF 356
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG +
Sbjct: 123 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPW 181
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 200 GVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAE 259
G +PG+ +G + FR+++ G+H +AGI RS+ A S++ +GGY+DD +
Sbjct: 7 GPIPGIPVGTXWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDVD 59
Query: 260 DSDILIYSGQGG----NANRKGEQAADQKLERGNLALE---------------RSLRRAS 300
+ Y+G GG R EQ+ DQKL N AL + R
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAF 356
VRV+R +K N ++ YDG+Y V + W EKGKSG +++Y L R +PG +
Sbjct: 120 PVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEPGPW 178
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDV 59
Query: 259 EDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRAS 300
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 60 DNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 119
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 120 PVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 175
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 7 FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDDV 59
Query: 259 EDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRAS 300
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 60 DNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 119
Query: 301 EVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 120 PVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 175
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 28/177 (15%)
Query: 198 RLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDD 257
G +PGV +G ++ FR+++ G+H +AGI RS+ A S++ +GGY+DD
Sbjct: 19 HFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH---GRSNDG----AYSLVLAGGYEDD 71
Query: 258 AEDSDILIYSGQGG----NANRKGEQAADQKLERGNLALE--------------RSLRRA 299
++ + Y+G GG R Q++DQKL N AL R+
Sbjct: 72 VDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQG 131
Query: 300 SEVRVIRGMKDAINQS---SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
VRV+R MK + ++ YDG+Y V + W E+GKSG +++Y L R +P
Sbjct: 132 KPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEP 188
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 72/176 (40%), Gaps = 35/176 (19%)
Query: 486 KVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGSNEDYVFDTTRTY 545
K + V+++ G GL I AG + EYAG V+ + + + Y
Sbjct: 51 KEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDK------------REKYY 98
Query: 546 DSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFMNHSCSPNVFWQPIIFE 605
DS I+D + V+ A GN ARF+NHSC PN + + I
Sbjct: 99 DSKGIGCYMFRIDDSE--------------VVDATMHGNAARFINHSCEPNCYSRVI--- 141
Query: 606 NNNESFVHVAFFAMRHVPPMTELTYDYGISKSDGGNYEPHRKKKCLCGTLKCRGYF 661
N + H+ FAMR + ELTYDY D N P C CG KCR +
Sbjct: 142 -NIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLP-----CNCGAKKCRKFL 191
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 200 GVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAE 259
G +PG+ +G + FR+++ G+H + GI RS+ A S++ +GG+ D+ +
Sbjct: 31 GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIH---GRSNDG----AYSLVLAGGFADEVD 83
Query: 260 DSDILIYSGQGG----NANRKGEQAADQKLERGNLAL---------------ERSLRRAS 300
D Y+G GG R G +ADQ L N AL R+ R
Sbjct: 84 RGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGK 143
Query: 301 EVRVIR---GMKDAINQSSKVYVYDGLYTVQESWTEKGKS-GCNIFKYKLVRIPGQPGAF 356
VRVIR G K + + YDG+Y V + W E S G +++Y L R +P +
Sbjct: 144 PVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPW 203
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 450 YTANGVLVSRKPLIYECGPSCPCNRDC--KNRVSQTGLKVRLDVFKTK-----DRGWGLR 502
+ N +V+ L C CP C N V+ T + + +VFK ++ +G+
Sbjct: 118 FNTNATIVAT--LTAACAQHCPEAMICVIANPVNST-IPITAEVFKKHGVYNPNKIFGVT 174
Query: 503 SLDPIRAGTFICEYAG 518
+LD +RA TF+ E G
Sbjct: 175 TLDIVRANTFVAELKG 190
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 530 GEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVAR 587
GEGS+ YV + D Y LIE D S+ E+ D LV SA + G + +
Sbjct: 60 GEGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLV-SAPHGGTIIK 116
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 530 GEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFM 589
GEGS YV + D ++Y LIE D DT E+ LV S G++ +
Sbjct: 59 GEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSG-GSIIKST 117
Query: 590 NH 591
+H
Sbjct: 118 SH 119
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 530 GEGSNEDYVFDTTRTYDSFKWNYEPGLIEDDDPSDTTEEYDLPYPLVISAKNVGNVARFM 589
GEGS YV + D ++Y LIE D DT E+ LV S G++ +
Sbjct: 59 GEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSG-GSIIKST 117
Query: 590 NH 591
+H
Sbjct: 118 SH 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,887,568
Number of Sequences: 62578
Number of extensions: 795358
Number of successful extensions: 1673
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 38
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)