Query 006092
Match_columns 661
No_of_seqs 200 out of 280
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 18:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 7E-109 2E-113 866.6 32.7 302 219-525 1-312 (312)
2 PF04783 DUF630: Protein of un 99.9 2.5E-26 5.3E-31 185.9 6.4 60 1-60 1-60 (60)
3 KOG1924 RhoA GTPase effector D 96.8 0.0026 5.6E-08 74.0 7.4 37 217-253 744-780 (1102)
4 KOG1924 RhoA GTPase effector D 96.6 0.018 4E-07 67.2 11.8 26 374-399 801-826 (1102)
5 cd07599 BAR_Rvs167p The Bin/Am 96.3 0.75 1.6E-05 46.7 20.8 177 439-639 16-196 (216)
6 cd07591 BAR_Rvs161p The Bin/Am 95.3 2.1 4.5E-05 44.2 19.3 157 439-640 25-192 (224)
7 cd07676 F-BAR_FBP17 The F-BAR 94.1 8.9 0.00019 40.4 22.3 65 583-647 169-233 (253)
8 cd07598 BAR_FAM92 The Bin/Amph 93.8 8 0.00017 39.7 19.2 177 439-647 11-205 (211)
9 cd07675 F-BAR_FNBP1L The F-BAR 93.5 12 0.00025 39.7 20.4 153 492-649 61-234 (252)
10 cd07653 F-BAR_CIP4-like The F- 93.2 12 0.00025 38.7 22.5 182 455-646 28-230 (251)
11 cd07657 F-BAR_Fes_Fer The F-BA 92.5 15 0.00033 38.2 22.4 199 438-646 7-230 (237)
12 COG5178 PRP8 U5 snRNP spliceos 90.4 0.2 4.4E-06 60.8 3.2 27 451-477 659-685 (2365)
13 PF03114 BAR: BAR domain; Int 90.2 20 0.00043 35.2 22.1 60 583-642 167-226 (229)
14 PF01213 CAP_N: Adenylate cycl 87.4 0.88 1.9E-05 49.3 5.3 46 14-60 156-203 (312)
15 KOG1923 Rac1 GTPase effector F 86.7 1.4 3E-05 52.3 6.6 12 357-368 517-528 (830)
16 KOG2675 Adenylate cyclase-asso 86.3 0.92 2E-05 50.7 4.8 26 36-61 183-208 (480)
17 cd07603 BAR_ACAPs The Bin/Amph 84.3 51 0.0011 33.6 22.6 155 440-640 17-189 (200)
18 cd07637 BAR_ACAP3 The Bin/Amph 83.7 55 0.0012 33.4 22.6 116 506-637 54-186 (200)
19 smart00721 BAR BAR domain. 79.9 70 0.0015 32.1 20.8 184 441-643 29-236 (239)
20 PF03114 BAR: BAR domain; Int 76.0 45 0.00098 32.7 12.3 95 307-409 118-219 (229)
21 PF01690 PLRV_ORF5: Potato lea 75.3 2.1 4.5E-05 48.4 2.7 19 306-324 431-449 (465)
22 KOG2675 Adenylate cyclase-asso 74.0 5.5 0.00012 44.7 5.5 18 36-53 197-214 (480)
23 cd07638 BAR_ACAP2 The Bin/Amph 73.5 1.1E+02 0.0024 31.3 22.6 99 441-561 11-125 (200)
24 cd07635 BAR_GRAF2 The Bin/Amph 72.5 1.2E+02 0.0027 31.2 22.3 100 440-562 17-132 (207)
25 cd07627 BAR_Vps5p The Bin/Amph 72.4 1.2E+02 0.0026 31.0 20.8 188 436-640 8-213 (216)
26 cd07655 F-BAR_PACSIN The F-BAR 72.2 1.3E+02 0.0029 31.5 21.1 175 455-641 28-231 (258)
27 cd07652 F-BAR_Rgd1 The F-BAR ( 70.6 1.4E+02 0.003 31.0 23.7 53 587-639 168-220 (234)
28 cd07659 BAR_PICK1 The Bin/Amph 70.4 1.4E+02 0.003 31.0 17.7 102 375-536 2-104 (215)
29 cd07634 BAR_GAP10-like The Bin 70.1 1.4E+02 0.003 30.8 21.8 40 439-478 16-55 (207)
30 cd07639 BAR_ACAP1 The Bin/Amph 70.0 1.4E+02 0.0029 30.7 20.6 91 442-561 19-125 (200)
31 smart00721 BAR BAR domain. 69.6 52 0.0011 33.1 11.2 88 321-408 138-227 (239)
32 cd07680 F-BAR_PACSIN1 The F-BA 69.5 1.6E+02 0.0035 31.3 21.2 177 449-637 18-227 (258)
33 cd07602 BAR_RhoGAP_OPHN1-like 69.5 1.4E+02 0.0031 30.7 22.4 102 439-563 16-133 (207)
34 cd07589 BAR_DNMBP The Bin/Amph 69.0 1.3E+02 0.0029 30.2 16.6 46 589-642 131-176 (195)
35 KOG1925 Rac1 GTPase effector F 66.8 9.5 0.00021 43.6 5.4 31 494-524 605-645 (817)
36 cd07673 F-BAR_FCHO2 The F-BAR 66.4 1.7E+02 0.0037 31.0 14.6 85 306-399 116-200 (269)
37 cd07307 BAR The Bin/Amphiphysi 66.2 1.2E+02 0.0026 28.6 23.8 70 392-469 8-77 (194)
38 cd07601 BAR_APPL The Bin/Amphi 65.8 1.7E+02 0.0037 30.3 22.3 98 440-562 17-130 (215)
39 cd07590 BAR_Bin3 The Bin/Amphi 65.3 1.8E+02 0.0039 30.3 20.2 92 489-604 64-165 (225)
40 cd07633 BAR_OPHN1 The Bin/Amph 63.8 1.8E+02 0.004 30.0 21.5 100 440-562 17-132 (207)
41 PRK15319 AIDA autotransporter- 63.4 9.9 0.00021 49.5 5.3 11 239-249 1888-1898(2039)
42 PF09325 Vps5: Vps5 C terminal 62.7 1.8E+02 0.0038 29.4 21.7 184 436-640 28-233 (236)
43 cd07596 BAR_SNX The Bin/Amphip 61.6 1.1E+02 0.0025 30.0 11.7 56 327-382 120-176 (218)
44 cd07648 F-BAR_FCHO The F-BAR ( 61.0 2.1E+02 0.0046 29.8 22.0 42 584-626 150-191 (261)
45 cd07636 BAR_GRAF The Bin/Amphi 59.5 2.2E+02 0.0047 29.4 21.4 101 438-562 15-132 (207)
46 PF10168 Nup88: Nuclear pore c 59.1 1.9E+02 0.004 35.3 14.7 101 511-633 541-641 (717)
47 cd07604 BAR_ASAPs The Bin/Amph 57.1 2.4E+02 0.0052 29.1 22.9 198 432-644 9-212 (215)
48 cd07593 BAR_MUG137_fungi The B 56.3 2.5E+02 0.0054 29.1 21.7 173 440-643 8-207 (215)
49 PF01213 CAP_N: Adenylate cycl 55.5 9.9 0.00022 41.3 3.1 30 26-55 183-212 (312)
50 cd07606 BAR_SFC_plant The Bin/ 53.7 2.6E+02 0.0057 28.6 21.5 36 437-472 13-48 (202)
51 PF09325 Vps5: Vps5 C terminal 53.0 1.1E+02 0.0024 30.9 10.1 91 327-417 138-229 (236)
52 cd07307 BAR The Bin/Amphiphysi 52.1 2.1E+02 0.0045 26.9 23.7 57 585-642 129-186 (194)
53 cd07641 BAR_ASAP1 The Bin/Amph 49.7 3.2E+02 0.007 28.4 20.9 185 445-644 22-212 (215)
54 cd07674 F-BAR_FCHO1 The F-BAR 48.3 3.5E+02 0.0076 28.4 21.0 43 584-627 150-192 (261)
55 COG5178 PRP8 U5 snRNP spliceos 48.2 14 0.00031 45.9 3.1 22 304-325 613-634 (2365)
56 cd07651 F-BAR_PombeCdc15_like 48.1 1.1E+02 0.0023 31.6 9.2 71 324-399 121-200 (236)
57 cd07642 BAR_ASAP2 The Bin/Amph 48.1 3.4E+02 0.0074 28.2 21.8 198 434-644 11-212 (215)
58 PF04782 DUF632: Protein of un 48.0 4E+02 0.0087 29.1 13.8 84 507-613 72-158 (312)
59 PF01690 PLRV_ORF5: Potato lea 47.6 14 0.0003 42.1 2.7 7 87-93 21-27 (465)
60 PHA03211 serine/threonine kina 46.9 20 0.00044 40.7 4.0 7 229-235 146-152 (461)
61 PF06637 PV-1: PV-1 protein (P 46.7 70 0.0015 35.7 7.7 8 12-19 313-320 (442)
62 cd07600 BAR_Gvp36 The Bin/Amph 45.9 3.8E+02 0.0083 28.2 16.0 66 490-561 103-171 (242)
63 PF13805 Pil1: Eisosome compon 45.2 3.7E+02 0.008 29.0 12.6 98 342-453 156-264 (271)
64 PF12408 DUF3666: Ribose-5-pho 43.9 18 0.00038 28.9 2.0 29 217-245 4-32 (48)
65 PRK14153 heat shock protein Gr 43.6 1.9E+02 0.0042 29.5 9.9 53 530-601 26-78 (194)
66 KOG3771 Amphiphysin [Intracell 42.6 5.9E+02 0.013 29.4 17.7 107 440-559 45-151 (460)
67 KOG3671 Actin regulatory prote 42.0 37 0.0008 39.0 4.9 14 21-34 289-302 (569)
68 cd07651 F-BAR_PombeCdc15_like 40.7 4.2E+02 0.0091 27.2 21.8 54 584-638 157-210 (236)
69 cd07588 BAR_Amphiphysin The Bi 40.1 4.4E+02 0.0095 27.2 19.2 158 440-638 27-185 (211)
70 cd07673 F-BAR_FCHO2 The F-BAR 39.8 4.9E+02 0.011 27.6 19.1 44 583-627 156-199 (269)
71 KOG3671 Actin regulatory prote 39.4 40 0.00086 38.8 4.6 8 268-275 537-544 (569)
72 cd07671 F-BAR_PSTPIP1 The F-BA 38.7 4.8E+02 0.01 27.3 20.5 140 453-609 26-185 (242)
73 cd03568 VHS_STAM VHS domain fa 37.8 1.7E+02 0.0037 28.2 8.2 97 372-478 37-133 (144)
74 cd07617 BAR_Endophilin_B2 The 36.4 5.2E+02 0.011 27.0 14.5 113 495-641 97-217 (220)
75 cd07659 BAR_PICK1 The Bin/Amph 35.4 1.7E+02 0.0036 30.4 7.9 66 322-387 104-169 (215)
76 cd07656 F-BAR_srGAP The F-BAR 35.1 5.5E+02 0.012 26.9 19.4 45 582-626 188-232 (241)
77 KOG2391 Vacuolar sorting prote 35.1 70 0.0015 35.3 5.5 49 70-142 145-193 (365)
78 PF05308 Mito_fiss_reg: Mitoch 35.0 99 0.0021 32.8 6.6 10 219-228 239-248 (253)
79 PRK11546 zraP zinc resistance 34.3 81 0.0018 30.7 5.3 51 327-386 53-103 (143)
80 cd07613 BAR_Endophilin_A1 The 33.3 5.8E+02 0.013 26.6 15.8 124 496-645 93-217 (223)
81 KOG4196 bZIP transcription fac 32.7 3.7E+02 0.008 25.9 9.2 10 504-513 22-31 (135)
82 cd07654 F-BAR_FCHSD The F-BAR 32.5 6.4E+02 0.014 26.9 23.3 49 586-634 186-234 (264)
83 KOG0774 Transcription factor P 31.3 2.4E+02 0.0053 30.2 8.5 64 579-642 102-168 (334)
84 cd07596 BAR_SNX The Bin/Amphip 30.8 5.2E+02 0.011 25.3 24.5 39 517-558 100-138 (218)
85 smart00872 Alpha-mann_mid Alph 30.0 97 0.0021 26.4 4.6 53 354-411 6-58 (79)
86 PF06989 BAALC_N: BAALC N-term 29.2 23 0.00051 28.1 0.6 12 1-12 1-12 (53)
87 KOG4503 Uncharacterized conser 29.2 56 0.0012 33.6 3.4 39 489-527 146-187 (230)
88 COG5085 Predicted membrane pro 29.2 56 0.0012 33.6 3.4 39 489-527 146-187 (230)
89 PF10475 DUF2450: Protein of u 28.8 7.2E+02 0.016 26.5 12.0 84 321-405 74-158 (291)
90 PHA03211 serine/threonine kina 28.6 79 0.0017 36.0 5.0 7 394-400 267-273 (461)
91 KOG4657 Uncharacterized conser 28.0 6.3E+02 0.014 26.6 10.6 84 514-609 42-128 (246)
92 cd07647 F-BAR_PSTPIP The F-BAR 27.9 6.9E+02 0.015 25.8 23.1 147 454-625 27-200 (239)
93 PRK14849 putative lipoprotein/ 27.6 41 0.00088 44.3 2.6 11 238-248 1645-1655(1806)
94 PRK15313 autotransport protein 27.5 57 0.0012 40.4 3.6 6 243-248 804-809 (955)
95 PF08397 IMD: IRSp53/MIM homol 27.3 6.8E+02 0.015 25.5 16.1 32 440-471 11-42 (219)
96 smart00509 TFS2N Domain in the 27.2 90 0.002 26.7 3.9 54 353-408 18-73 (75)
97 PF08629 PDE8: PDE8 phosphodie 27.0 7.5 0.00016 30.8 -2.4 7 1-7 1-7 (52)
98 cd07645 I-BAR_IMD_BAIAP2L1 Inv 26.5 7.7E+02 0.017 25.9 16.7 33 442-474 9-41 (226)
99 cd07611 BAR_Amphiphysin_I_II T 26.2 7.5E+02 0.016 25.6 19.4 159 440-639 27-186 (211)
100 PF09241 Herp-Cyclin: Herpesvi 25.5 40 0.00086 29.9 1.4 14 386-399 18-31 (106)
101 PHA03247 large tegument protei 25.4 1.1E+02 0.0023 42.1 5.6 45 66-130 2910-2954(3151)
102 PF14644 DUF4456: Domain of un 24.9 7.4E+02 0.016 25.2 15.8 99 537-644 88-186 (208)
103 cd07612 BAR_Bin2 The Bin/Amphi 24.7 8E+02 0.017 25.4 19.2 167 440-642 27-204 (211)
104 PF03997 VPS28: VPS28 protein; 24.5 1.4E+02 0.0029 30.4 5.2 79 372-453 106-185 (188)
105 PF04065 Not3: Not1 N-terminal 24.4 3.7E+02 0.0081 28.2 8.5 87 509-611 15-101 (233)
106 cd07674 F-BAR_FCHO1 The F-BAR 24.1 7.5E+02 0.016 25.9 11.0 37 325-361 124-160 (261)
107 KOG2008 BTK-associated SH3-dom 23.8 3.1E+02 0.0068 30.1 7.9 82 303-387 148-233 (426)
108 KOG3397 Acetyltransferases [Ge 23.2 79 0.0017 32.0 3.2 6 21-26 102-107 (225)
109 KOG3284 Vacuolar sorting prote 23.2 2.9E+02 0.0062 28.3 7.0 75 371-450 131-208 (213)
110 PF06456 Arfaptin: Arfaptin-li 22.8 6.8E+02 0.015 26.1 10.1 87 323-409 136-227 (229)
111 PRK14145 heat shock protein Gr 22.3 5.1E+02 0.011 26.5 8.8 17 584-600 73-89 (196)
112 PF07111 HCR: Alpha helical co 22.1 1.5E+03 0.033 27.7 15.7 130 516-646 269-409 (739)
113 cd07627 BAR_Vps5p The Bin/Amph 22.0 6.1E+02 0.013 25.8 9.5 58 326-383 117-175 (216)
114 cd07631 BAR_APPL1 The Bin/Amph 21.5 9.4E+02 0.02 25.1 22.0 98 440-562 17-130 (215)
115 PF10669 Phage_Gp23: Protein g 21.1 3.4E+02 0.0075 24.9 6.4 66 318-384 43-108 (121)
116 PF08655 DASH_Ask1: DASH compl 20.6 1.7E+02 0.0036 25.0 4.1 49 361-409 2-56 (66)
117 KOG0810 SNARE protein Syntaxin 20.6 1.1E+03 0.024 25.6 12.1 135 509-649 43-210 (297)
118 cd07619 BAR_Rich2 The Bin/Amph 20.5 1E+03 0.022 25.2 18.6 134 514-655 104-241 (248)
119 cd07618 BAR_Rich1 The Bin/Amph 20.4 1E+03 0.022 25.2 16.7 130 517-655 107-239 (246)
120 cd07632 BAR_APPL2 The Bin/Amph 20.2 1E+03 0.022 24.9 16.1 55 507-561 59-129 (215)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=7.3e-109 Score=866.64 Aligned_cols=302 Identities=43% Similarity=0.649 Sum_probs=278.6
Q ss_pred cHHHHHHHHHHHHHHHhcccchhhhhhhcCCCCCCCCCcccccccccccccccccccccccccccc-cccCCCCCCCCCC
Q 006092 219 TLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSFPPHNFEESKRNMSSSAKVFSALSWSWSSRSL-QFKQGAVPLGGSS 297 (661)
Q Consensus 219 dl~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~~~~~~~~~~~k~~~s~~vl~~~s~s~s~k~~-~~~~d~~~~~~~~ 297 (661)
||++||||||++|+|||+||+|||+||||+|++||+.+ .+.++++++|++++++++|+|++++. ....++ .+.+
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~--~~~~~~~~~s~~~~~~~~w~~s~~s~~~~~~~~---~~~~ 75 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNF--SDLKGKVDHSSRVLSPISWSRSSSSRISNSDSD---FDEE 75 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCccc--ccccccccchhhhccccccCCCCCCcccccccC---cCcc
Confidence 79999999999999999999999999999999999865 34567788999999999999988763 222121 1223
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHH
Q 006092 298 EPCGPGAHCITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISET 377 (661)
Q Consensus 298 ~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsi 377 (661)
.++++|+||||||||||||||||+|||++|+||++|||||++||+||+||+++.+|||||++|++|||||+|+||+||+|
T Consensus 76 ~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~L~tri~Vaiq~v~si 155 (312)
T PF04782_consen 76 ECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKDLHTRIRVAIQSVDSI 155 (312)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHhHHH
Q 006092 378 CSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCK 457 (661)
Q Consensus 378 s~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~W~~sF~~ 457 (661)
|++|+|||||||||||+|||+||++|||+|+||||+|++||+++++|++++++.+|+++||+||+|||.||++|++||++
T Consensus 156 S~~I~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~ 235 (312)
T PF04782_consen 156 SKRIEKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCK 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-cC-----CCCCC---CCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 006092 458 LTKFQRDYVRTLSGWIKLTECLV-DE-----HQRSN---CSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAI 525 (661)
Q Consensus 458 ~i~~Qk~Yv~aLn~WL~~~~~~~-~~-----~~~~~---~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i 525 (661)
||++||+||+||||||++|+.++ ++ .++++ ++||||+||++|+++||+||+++|++||++|+++||+|
T Consensus 236 ~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 236 WIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999643 22 23444 49999999999999999999999999999999999976
No 2
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=99.93 E-value=2.5e-26 Score=185.92 Aligned_cols=60 Identities=48% Similarity=0.861 Sum_probs=59.3
Q ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHhhhccccccc
Q 006092 1 MGCVTSRIDKDERVQICRQRKRAMKQLVGVRGQFAEAQLAYLRALKNTGVTLRQFTESES 60 (661)
Q Consensus 1 MGC~~SKid~eeav~~CkeRkr~~k~av~~R~~laaah~~y~~sLr~~g~al~~Fa~~e~ 60 (661)
|||++||+|+||+|++||+||+|||+||++||+||+||.+|++|||+||+||++|+++|+
T Consensus 1 MGC~~SK~d~eeaV~~CkeRkr~~k~Av~~R~~lAaaH~aY~~SLr~~g~aL~~F~~~et 60 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKERKRLMKQAVDARYALAAAHAAYIQSLRNVGAALRQFAEGET 60 (60)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.81 E-value=0.0026 Score=73.95 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=25.2
Q ss_pred cCcHHHHHHHHHHHHHHHhcccchhhhhhhcCCCCCC
Q 006092 217 KKTLDGIIKELDDYFLKASAGGKEIAVLVDINKGGSF 253 (661)
Q Consensus 217 ~kdl~ev~keI~~~F~kAs~sg~eVs~mLEa~k~~~~ 253 (661)
....+.-+.+|...|.--++.-.=|.+|+++.+++.+
T Consensus 744 e~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pR 780 (1102)
T KOG1924|consen 744 EQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPR 780 (1102)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChh
Confidence 3455666667777777777777777777777777554
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.55 E-value=0.018 Score=67.21 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=14.7
Q ss_pred HHHHHhhhcccccchhhhHHHHHHHH
Q 006092 374 ISETCSSILNVIDEELYPQLATLISG 399 (661)
Q Consensus 374 vdsis~~I~kLRDeEL~PQL~eLi~G 399 (661)
|-+.+..-+.||-.|=|-.|+|||--
T Consensus 801 i~avt~ACEE~rkSesFs~lLeLvLl 826 (1102)
T KOG1924|consen 801 IVAVTAACEELRKSESFSKLLELVLL 826 (1102)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444556666666666666643
No 5
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=96.29 E-value=0.75 Score=46.73 Aligned_cols=177 Identities=16% Similarity=0.205 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-CCChHHHHHHHHHHhhccCChHHHHHHHHH
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSN-CSSTIRRLCENWQLVFDKLPEKVASEAINS 517 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~-~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~ 517 (661)
..+..|-.++..|..++....++|.++++++.+=.. +...+...+.+. .++....-|.+|...+..|-. .+..-+..
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~-p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~-~~~~~l~~ 93 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD-PIVGPKESVGSHPAPESTLARLSRYVKALEELKK-ELLEELEF 93 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 366788899999999999999999999998877544 111111122221 134566788999999888843 33333333
Q ss_pred HHHHHHHHHHhhHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCCCCChhhhh-HHHHHHHHHHHH
Q 006092 518 FLSAIHAIFLQQIEERK-LHKKIDRLEKRLQKEFNSMAEMEQRFEG-NFAVGVEHPELSPKHPLILK-AAKVEALKKRVE 594 (661)
Q Consensus 518 f~~~v~~i~~~Q~eE~~-~k~k~e~~~kelekk~~~l~~~e~k~~~-~~~~~~~~~~~~~~~~~~~k-r~~le~lrkrle 594 (661)
|-..|- .-..+.. +=..+..+-+.=++|...++....++.. ... +.+.+.| ..++..+.++++
T Consensus 94 i~~~V~----~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~----------k~~~~~kd~~kl~kae~~l~ 159 (216)
T cd07599 94 FEERVI----LPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQK----------KKELSLKDEKQLAKLERKLE 159 (216)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc----------CCCCChhHHHHHHHHHHHHH
Confidence 322211 1111111 0011122222233333334444443332 110 0111111 257888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHH
Q 006092 595 SEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA 639 (661)
Q Consensus 595 ~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~ 639 (661)
.+++.|...- +-|+.-||.+|.....|-..++.+|=-
T Consensus 160 ~a~~~y~~lN--------~~Lk~eLP~l~~~~~~~~~~~~~~~~~ 196 (216)
T cd07599 160 EAKEEYEALN--------ELLKSELPKLLALADEFLPPLFKSFYY 196 (216)
T ss_pred HHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999984332 558999999999999999999887644
No 6
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=95.30 E-value=2.1 Score=44.20 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHH------
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVAS------ 512 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~------ 512 (661)
..+..|-.++..|..++..+.++|....++|.+ ++.|..++ ....+|..|...++.|.+..+.
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~-----lY~p~~~~------~~~~~~~~y~~~v~~l~~~~~~el~~~~ 93 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS-----FYGDAGDK------DGAMLSQEYKQAVEELDAETVKELDGPY 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCCCc------cHhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467889999999999999999999999999976 44443322 2256888888888777433322
Q ss_pred -----HHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHH
Q 006092 513 -----EAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVE 587 (661)
Q Consensus 513 -----~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le 587 (661)
.=|..|.+.+..|-.. . +|.+.-.-|+++-...++.+..|- .+++ .+|.
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~------I-kKR~~KllDYD~~~~k~~kl~~K~--------------~kd~-----~kL~ 147 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEA------I-KKRNHKLLDYDAARAKVRKLIDKP--------------SEDP-----TKLP 147 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHH------H-HHHHhhHhhHHHHHHHHHHHHhcc--------------cCCH-----HHHH
Confidence 2222332222222111 1 111111224444444444333221 0122 4788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHH
Q 006092 588 ALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEAL 640 (661)
Q Consensus 588 ~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l 640 (661)
.+.+.++.+++.|.... +-|+.-||.+|.+-..|-..|++++=.+
T Consensus 148 kae~el~~a~~~Ye~lN--------~~Lk~ELP~l~~~r~~~l~~~f~s~~~i 192 (224)
T cd07591 148 RAEKELDEAKEVYETLN--------DQLKTELPQLVDLRIPYLDPSFEAFVKI 192 (224)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999995443 4578888888887777777776665443
No 7
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.13 E-value=8.9 Score=40.35 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006092 583 AAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVA 647 (661)
Q Consensus 583 r~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~~ 647 (661)
+..++....-++..+..|...+..++...-.-...-||.||+.|-+|-..-+.-+.++......+
T Consensus 169 k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~ 233 (253)
T cd07676 169 RQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEV 233 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666778899999999888777667788999999888888877777777776655443
No 8
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.81 E-value=8 Score=39.71 Aligned_cols=177 Identities=12% Similarity=0.188 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCC---h-------
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLP---E------- 508 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp---~------- 508 (661)
+..-.||.-+...|..|..++...+.+-.++-.--+-+...-+.. .|.+-.-...|...+.+|. .
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E-----~~~L~~~L~~lae~~~~i~d~~q~qv~~l~ 85 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE-----NPSLKQGLKNFAECLAALQDYRQAEVERLE 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355679999999999999999999999888877766443222111 5677777777777777776 2
Q ss_pred HHHHHHHHHHHHHHHHH-------HHhhHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHhhhccccCCCCCCCCCCCChhh
Q 006092 509 KVASEAINSFLSAIHAI-------FLQQIEERKLHKKIDRLEKRLQK-EFNSMAEMEQRFEGNFAVGVEHPELSPKHPLI 580 (661)
Q Consensus 509 ~~v~~aIk~f~~~v~~i-------~~~Q~eE~~~k~k~e~~~kelek-k~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~ 580 (661)
..+++-|+.|...+.+. ...|..+.+++.+.+.+. .-.+ -...+.+++.++.
T Consensus 86 ~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk-~~~~~d~~~i~eaE~~l~------------------- 145 (211)
T cd07598 86 AKVVQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLR-QKNPSDRQIISQAESELQ------------------- 145 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchhhHHHHHHHHHH-------------------
Confidence 33445555555554322 112222222222222220 0000 0001112222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006092 581 LKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVA 647 (661)
Q Consensus 581 ~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~~ 647 (661)
.=+..++...+.+++|+.++.+. -+.-|+..|-....+++.|....++.|-.++.....+
T Consensus 146 ~a~~d~~r~s~~l~ee~~rFe~~-------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~ 205 (211)
T cd07598 146 KASVDANRSTKELEEQMDNFEKQ-------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNI 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11224555556666666666432 3566888888889999999999999888888766543
No 9
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.54 E-value=12 Score=39.65 Aligned_cols=153 Identities=10% Similarity=0.168 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhccC----------ChH---HHHHHHHHHHHHHHHHHHhhHHHHH-Hhhh-------hhHHHHHHHHHH
Q 006092 492 IRRLCENWQLVFDKL----------PEK---VASEAINSFLSAIHAIFLQQIEERK-LHKK-------IDRLEKRLQKEF 550 (661)
Q Consensus 492 If~lc~~W~~~ld~l----------p~~---~v~~aIk~f~~~v~~i~~~Q~eE~~-~k~k-------~e~~~kelekk~ 550 (661)
.+..|..|..-|..+ .+. .|+..|..++..+...-..+-.+.+ .++. ++...|.|++-.
T Consensus 61 ~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~ac 140 (252)
T cd07675 61 RFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFEREC 140 (252)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566675555444 222 2555667777777766666532222 2222 233333444433
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHH
Q 006092 551 NSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFS 630 (661)
Q Consensus 551 ~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs 630 (661)
+..+....++..-. .| +. ..+..+..=+..++...+-.|..+..|...+..++...----..-||.||.-|-+|-
T Consensus 141 ke~E~A~~k~~ka~--~d--~~-~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~le 215 (252)
T cd07675 141 REAEKAQQSYERLD--ND--TN-ATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMD 215 (252)
T ss_pred HHHHHHHHHHHhcc--cC--cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 33444444443211 11 11 112223222345555556667778899888888866555555666999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhh
Q 006092 631 NASAKAFEALHSHIKVAAR 649 (661)
Q Consensus 631 ~~~~~aye~l~~~~~~~~~ 649 (661)
..-+.-+.+++..+..+.+
T Consensus 216 E~Ri~~l~e~~~~~~~~E~ 234 (252)
T cd07675 216 ERRTVKLSECYRGFADSER 234 (252)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887665443
No 10
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=93.22 E-value=12 Score=38.74 Aligned_cols=182 Identities=14% Similarity=0.186 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCC----------h---HHHHHHHHHHHHH
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLP----------E---KVASEAINSFLSA 521 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp----------~---~~v~~aIk~f~~~ 521 (661)
|..=....++|-+.|..|-+....... .+..+.+.+...|...+..+- + ..|.+-++.|...
T Consensus 28 ~keRa~iE~eYak~L~kLa~k~~~~~~-----~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~ 102 (251)
T cd07653 28 VKERAAIEQEYAKKLRKLVKKYLPKKK-----EEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-----CCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567789999999999886542111 111134567788887764311 1 1233333444333
Q ss_pred HHHHHHhhHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHH
Q 006092 522 IHAIFLQQIEER--------KLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRV 593 (661)
Q Consensus 522 v~~i~~~Q~eE~--------~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrl 593 (661)
......+..++. +.-+.++...+.|++..+..+....++..... .+.. ....+..-+..+......+
T Consensus 103 ~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~----~~~~-s~~~~eK~~~k~~k~~~~~ 177 (251)
T cd07653 103 LRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADA----DMNL-TKADVEKAKANANLKTQAA 177 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhcc-chhhHHHHHHHHHHHHHHH
Confidence 322222111111 11122333344444444444444444432110 0000 0112222334555555666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006092 594 ESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV 646 (661)
Q Consensus 594 e~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~ 646 (661)
+..+..|..++..++..--.--...||.||+.|..|=...++.+.++.....+
T Consensus 178 ~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~ 230 (251)
T cd07653 178 EEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAE 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67888898888887665555667899999998888877777777776654443
No 11
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=92.48 E-value=15 Score=38.23 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHH---
Q 006092 438 HQATAQLEAEVTSWYNSFCKL----TKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKV--- 510 (661)
Q Consensus 438 ~~at~qLe~el~~W~~sF~~~----i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~--- 510 (661)
|.|.+.+-.-=..|-..+.+| +..-++|-+.|..=-+. . ....++...|.+.+|..|...|+.+-+-.
T Consensus 7 h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq----~-~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~ 81 (237)
T cd07657 7 HEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQ----G-LKIEAGDDLQGSPISKSWKEIMDSTDQLSKLI 81 (237)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-CcCCCcccCCcChHHHHHHHHHHHHHHHHHHH
Confidence 445544444444454555444 45678999998754432 1 11122333457778999999887643211
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhHHHHH-Hhh-------hhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 006092 511 ----------ASEAINSFLSAIHAIFLQQIEERK-LHK-------KIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPE 572 (661)
Q Consensus 511 ----------v~~aIk~f~~~v~~i~~~Q~eE~~-~k~-------k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~ 572 (661)
+...|..+......+..+..++.. +.. .++.+.|.|++-.+..+....|+..... ++ .
T Consensus 82 ~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~--~~--~ 157 (237)
T cd07657 82 KQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV--KG--G 157 (237)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--c
Confidence 122344444444444433322211 111 1233334444444444444455532210 10 0
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006092 573 LSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV 646 (661)
Q Consensus 573 ~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~ 646 (661)
..+-.+...+..+.....++...++-|.-.+..++..--.-...-||.||..|-++--.......++....-+
T Consensus 158 -~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 158 -RGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112333444556666666777888888888888887777788999999999988888777776666554433
No 12
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.41 E-value=0.2 Score=60.81 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 006092 451 WYNSFCKLTKFQRDYVRTLSGWIKLTE 477 (661)
Q Consensus 451 W~~sF~~~i~~Qk~Yv~aLn~WL~~~~ 477 (661)
|.-+..-|...=|+-|--|-.||-.-+
T Consensus 659 W~p~WRvWlfflRG~iPLLeRyignLv 685 (2365)
T COG5178 659 WGPQWRVWLFFLRGHIPLLERYIGNLV 685 (2365)
T ss_pred ccHHHHHHHHHHhcccHHHHHHHhHHH
Confidence 888888999999999999999998543
No 13
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=90.16 E-value=20 Score=35.21 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006092 583 AAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHS 642 (661)
Q Consensus 583 r~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~ 642 (661)
..+++..+...+.....+...+.....+....|...|..+.++...|...+.+.+++|..
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~ 226 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQP 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555555555555555666666666667777777777777666654
No 14
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=87.40 E-value=0.88 Score=49.30 Aligned_cols=46 Identities=9% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHhhhhhHhhhccccccc
Q 006092 14 VQICRQRKRAMKQ--LVGVRGQFAEAQLAYLRALKNTGVTLRQFTESES 60 (661)
Q Consensus 14 v~~CkeRkr~~k~--av~~R~~laaah~~y~~sLr~~g~al~~Fa~~e~ 60 (661)
|.-|++=-.|+-. ..+.|. --..|+.+++++.++=..|+.|+-.+.
T Consensus 156 V~e~~dsA~Fy~NRVLke~K~-kd~~hveWvks~~~l~~~L~~YVke~h 203 (312)
T PF01213_consen 156 VKEMKDSAQFYTNRVLKEYKE-KDPKHVEWVKSFKALLKELQAYVKEHH 203 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-T-HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444544444443 222222 246799999999999889998877543
No 15
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.68 E-value=1.4 Score=52.28 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.7
Q ss_pred HHHHHhhhhhHH
Q 006092 357 RLSVDSLEVDIR 368 (661)
Q Consensus 357 ra~Vk~L~tri~ 368 (661)
+..|.+|+.|+.
T Consensus 517 lskIErle~kla 528 (830)
T KOG1923|consen 517 LSKIERLEEKLA 528 (830)
T ss_pred hhhhhhhHHHHH
Confidence 344555555543
No 16
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=86.33 E-value=0.92 Score=50.66 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhHhhhcccccccc
Q 006092 36 EAQLAYLRALKNTGVTLRQFTESESL 61 (661)
Q Consensus 36 aah~~y~~sLr~~g~al~~Fa~~e~~ 61 (661)
.-|..++.++.++=.-|+.|+-.+..
T Consensus 183 ~~hveWvKa~l~l~~eL~~YVk~hht 208 (480)
T KOG2675|consen 183 PRHVEWVKAYLALFLELQAYVKEHHT 208 (480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44788888888887778877766543
No 17
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.30 E-value=51 Score=33.56 Aligned_cols=155 Identities=12% Similarity=0.142 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
....|-......+.+...++++|+.|+.+|+.-=.-| ..|..+..+++.|+
T Consensus 17 ~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~-----------------------------~~d~~i~~~l~kF~ 67 (200)
T cd07603 17 RLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF-----------------------------RDDSLVQNCLNKFI 67 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------------------CCcHHHHHHHHHHH
Confidence 3444555555566667777777788877777432211 23446678888888
Q ss_pred HHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhH
Q 006092 520 SAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKA 583 (661)
Q Consensus 520 ~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr 583 (661)
..+..||..+..=..+- +.+..+.|.|+|-...++..-.|+...+. .+ |
T Consensus 68 ~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K---------~K-~----- 132 (200)
T cd07603 68 QALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPR---------SK-P----- 132 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CC-H-----
Confidence 88888877655422111 34567788899988888888888764321 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhCC-HHHHHHHHHHHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNA-ARITQAMTLNNLKTSL-PNVFQALMGFSNASAKAFEAL 640 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~-~~~tr~~tl~~Lq~gL-p~vF~al~~Fs~~~~~aye~l 640 (661)
..++.....|..++..|..+ +..+- .+|.+|+.= ..+.++|-+|-.++..-|..=
T Consensus 133 ~~~~Ea~~~L~~~Rk~f~~~sldyv~--~in~iq~kKk~e~le~ll~~~~A~~tff~qG 189 (200)
T cd07603 133 QEAEEATNILTATRSCFRHTALDYVL--QINVLQAKKRHEILSTLLSYMHAQFTFFHQG 189 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 24445555666666666554 22222 234454321 377888888888877666543
No 18
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.67 E-value=55 Score=33.41 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 006092 506 LPEKVASEAINSFLSAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVE 569 (661)
Q Consensus 506 lp~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~ 569 (661)
+.|.++.++++.|+..+..||..+..=..+- +.+..+.|.|+|-...++..-.|+...+
T Consensus 54 ~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k----- 128 (200)
T cd07637 54 KKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAP----- 128 (200)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----
Confidence 4566788999999999999988776433221 3345777888888888877766654321
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCC-HHHHHHHHHHHHHHHHHH
Q 006092 570 HPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSL-PNVFQALMGFSNASAKAF 637 (661)
Q Consensus 570 ~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gL-p~vF~al~~Fs~~~~~ay 637 (661)
.+.| ..++.....|...+..|..+.-..- ..+|.+|..= -.+.++|.+|-.+...-|
T Consensus 129 -----~kk~-----~~l~Ea~~~L~~~Rk~f~~asLdyv-~~ln~iq~kKk~e~le~ll~~~~a~~tff 186 (200)
T cd07637 129 -----RHKP-----HEVEEATSTLTITRKCFRHLALDYV-LQINVLQAKKKFEILDSMLSFMHAQYTFF 186 (200)
T ss_pred -----CCCh-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1344445555555555554322111 1234444322 234556666655555444
No 19
>smart00721 BAR BAR domain.
Probab=79.92 E-value=70 Score=32.15 Aligned_cols=184 Identities=15% Similarity=0.190 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHh------hh---ccc--cCCCCCCCCChHHHHHHHHHHhhccC
Q 006092 441 TAQLEAEVTSWYNSFCKLTKFQRDYV---RTLSGWIKL------TE---CLV--DEHQRSNCSSTIRRLCENWQLVFDKL 506 (661)
Q Consensus 441 t~qLe~el~~W~~sF~~~i~~Qk~Yv---~aLn~WL~~------~~---~~~--~~~~~~~~~ppIf~lc~~W~~~ld~l 506 (661)
-.+||..+........++++.=+.|+ .++..=+.- ++ +.+ ....+.. ..++...+.....++.++
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 107 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGA-DSSYGKALDKLGEALKKL 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCc-hhHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777 444333221 11 111 0111111 334554555444444433
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhH
Q 006092 507 ---PEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKA 583 (661)
Q Consensus 507 ---p~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr 583 (661)
.... ....+.|+..+..++..+-.+.+. ..|.++++...++....++........ .+ . +.
T Consensus 108 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~------~~kk~~~~~lDyD~~~~kl~~~~~~~~-~~------~---~~ 170 (239)
T smart00721 108 LQVEESL-SQVKRTFILPLLNFLLGEFKEIKK------ARKKLERKLLDYDSARHKLKKAKKSKE-KK------K---DE 170 (239)
T ss_pred HhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhcc-CC------h---hh
Confidence 3333 555666677676666555544442 234444444444444444322110000 00 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006092 584 AKVEALKKRVESEKAKYLNAAR-------ITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSH 643 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~-------~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~ 643 (661)
++..++..++..+..|...-. ..-+.....+...|-.++.|-..|...+.+.+++|...
T Consensus 171 -kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~ 236 (239)
T smart00721 171 -KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQ 236 (239)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665322 22223333355566677777777888887777777543
No 20
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=75.97 E-value=45 Score=32.69 Aligned_cols=95 Identities=17% Similarity=0.338 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhcCCc---hhhhHHHHHHHHhhhhhHHHHHhhHHHHHh
Q 006092 307 ITLAKLYATEQKLYKE----VKEEERTKVEHEKKSMILQKQDEENHD---WTKIEKIRLSVDSLEVDIRRLQHSISETCS 379 (661)
Q Consensus 307 sTLdkLyaWEKKLY~E----VKa~E~~r~~yekK~~~Lr~~d~rg~~---~~~idkTra~Vk~L~tri~Vaiq~vdsis~ 379 (661)
..++.|--+= +.|.+ +|..+..+++||+-...+.+...++.. ..+++.++..-..+...+...+..
T Consensus 118 ~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~------ 190 (229)
T PF03114_consen 118 TVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK------ 190 (229)
T ss_dssp HTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3344444444 55544 456788999999999999988865543 567777777777777777766664
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHHH
Q 006092 380 SILNVIDEELYPQLATLISGLMRMWRKMYE 409 (661)
Q Consensus 380 ~I~kLRDeEL~PQL~eLi~GL~~MWk~M~e 409 (661)
|...|.+-|-+.|..+|.......+.+++
T Consensus 191 -l~~~~~~~l~~~l~~~i~~q~~~~~~~~~ 219 (229)
T PF03114_consen 191 -LFAKRQDILEPCLQSFIEAQLQYFQQLYQ 219 (229)
T ss_dssp -HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777779999999988777776654
No 21
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=75.27 E-value=2.1 Score=48.43 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006092 306 CITLAKLYATEQKLYKEVK 324 (661)
Q Consensus 306 ssTLdkLyaWEKKLY~EVK 324 (661)
..+|.+|=.=|+.=|+=+|
T Consensus 431 ~~~L~kLTteQR~eYeRIR 449 (465)
T PF01690_consen 431 DEKLSKLTTEQRAEYERIR 449 (465)
T ss_pred hhhhcccCHHHHHHHHHHH
Confidence 4555555555555444444
No 22
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=74.05 E-value=5.5 Score=44.72 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhhHhhh
Q 006092 36 EAQLAYLRALKNTGVTLR 53 (661)
Q Consensus 36 aah~~y~~sLr~~g~al~ 53 (661)
.--..|++..-.||..+.
T Consensus 197 ~eL~~YVk~hhtTGl~W~ 214 (480)
T KOG2675|consen 197 LELQAYVKEHHTTGLVWN 214 (480)
T ss_pred HHHHHHHHHhccccceec
Confidence 335678888888887765
No 23
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.52 E-value=1.1e+02 Score=31.25 Aligned_cols=99 Identities=11% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 006092 441 TAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLS 520 (661)
Q Consensus 441 t~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~ 520 (661)
...||..+.+..-.-..++.+++.|+.|......- +..++. -.-.|+.+.++|+.|+.
T Consensus 11 ~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~----------------l~d~~~------~~~~De~i~~~l~kF~~ 68 (200)
T cd07638 11 VAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNG----------------IRDLAQ------YSSKDAVIETSLTKFSD 68 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHHHH------hCCcchhhHHHHHHHHH
Confidence 34566666666666666666666666554433330 111111 11355577788888888
Q ss_pred HHHHHHHhhHHHHHH-----h-----------hhhhHHHHHHHHHHHHHHHHHHhhh
Q 006092 521 AIHAIFLQQIEERKL-----H-----------KKIDRLEKRLQKEFNSMAEMEQRFE 561 (661)
Q Consensus 521 ~v~~i~~~Q~eE~~~-----k-----------~k~e~~~kelekk~~~l~~~e~k~~ 561 (661)
.+..|...+..=..| . +++..+.|.|+|-...+...-.|+.
T Consensus 69 ~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~ 125 (200)
T cd07638 69 TLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNA 125 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 887766554431111 1 2334556667776665555555553
No 24
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=72.51 E-value=1.2e+02 Score=31.22 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
....|-........+...+.++||.|+.+|+.-=.-|+--...++ +..+...++.|+
T Consensus 17 ~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dd-----------------------e~~i~~sl~ef~ 73 (207)
T cd07635 17 FIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDD-----------------------ERCIDASLQEFS 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccch-----------------------hHHHHHHHHHHH
Confidence 345566666777788888999999999999988776653221111 111125555555
Q ss_pred HHHHHHHHhhHH-------HHHH---------hhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006092 520 SAIHAIFLQQIE-------ERKL---------HKKIDRLEKRLQKEFNSMAEMEQRFEG 562 (661)
Q Consensus 520 ~~v~~i~~~Q~e-------E~~~---------k~k~e~~~kelekk~~~l~~~e~k~~~ 562 (661)
..+..|..+... -..+ =+.+....|.|+|....++..-.|+..
T Consensus 74 ~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ 132 (207)
T cd07635 74 NFLKNLEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLN 132 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 555555444321 0000 023456678888888888888878653
No 25
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=72.38 E-value=1.2e+02 Score=30.97 Aligned_cols=188 Identities=12% Similarity=0.201 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHH-------HhhccCCh
Q 006092 436 YHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQ-------LVFDKLPE 508 (661)
Q Consensus 436 ~h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~-------~~ld~lp~ 508 (661)
.+++-.-+||.-|..-+.+-..+++.+++...++..-=.-+..+-... ..|.+-..+..-. ..+.+..+
T Consensus 8 ~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E----~~~~l~~~l~~~a~~~~~~~~~~~~~a~ 83 (216)
T cd07627 8 EKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLE----LSKSLSDLLAALAEVQKRIKESLERQAL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999888877655332211100 0233333333333 33344444
Q ss_pred HHHHH---HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHH
Q 006092 509 KVASE---AINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAK 585 (661)
Q Consensus 509 ~~v~~---aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~ 585 (661)
.++.. .|+.++..+.++-.-=..-.+.....+.+.++|.|+...+..+... + -++.+-+.....+
T Consensus 84 ~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~--------~----~s~~~K~~~~~~e 151 (216)
T cd07627 84 QDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ--------G----KTQQEKLNSLLSE 151 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------C----CChHHHHHHHHHH
Confidence 44444 5555555444442221122233344578888999988888876521 0 0112234444456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhhCCHHHHHHHHHHHHHHHHHHHHH
Q 006092 586 VEALKKRVESEKAKYLNAARITQAMTLNN--------LKTSLPNVFQALMGFSNASAKAFEAL 640 (661)
Q Consensus 586 le~lrkrle~e~~~~~~~~~~tr~~tl~~--------Lq~gLp~vF~al~~Fs~~~~~aye~l 640 (661)
|+.+.++++..+..|......++. -+.. ++..|-..-+++..|...+.+.++..
T Consensus 152 i~~~e~~~~~a~~~~e~is~~~k~-El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 152 LEEAERRASELKKEFEEVSELIKS-ELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777655443332 2233 33344444444444444444444443
No 26
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=72.17 E-value=1.3e+02 Score=31.51 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCCh-------------HHHHHHHHHHHHH
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPE-------------KVASEAINSFLSA 521 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~-------------~~v~~aIk~f~~~ 521 (661)
|..=..--+.|-+.|..|-++....... .|..-.|...|...+..+-. .+|.+.|+.|...
T Consensus 28 ~kERa~IE~~Yak~L~kLakk~~~~~~~------~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e 101 (258)
T cd07655 28 VQERAEIEKAYAKKLKEWAKKWRDLIEK------GPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKE 101 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667899999999999864422221 22333566777665543211 2344455555432
Q ss_pred H-HHH-----HHh----------hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHH
Q 006092 522 I-HAI-----FLQ----------QIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAK 585 (661)
Q Consensus 522 v-~~i-----~~~----------Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~ 585 (661)
. |.. -+. |..-.+.-++++...+.|+...+..+....++....+ + +... ...+..=+.+
T Consensus 102 ~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~--d--~~~~-~~eleK~~~k 176 (258)
T cd07655 102 NYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKS--D--TSLS-PDQVKKLQDK 176 (258)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--C--ccCC-HHHHHHHHHH
Confidence 1 111 000 0000011133455556666666666665555542221 0 0111 1112222355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHH
Q 006092 586 VEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALH 641 (661)
Q Consensus 586 le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~ 641 (661)
++.....++..+..|...+..+.... .--..-+|.+|+.+..|=..=++.+.++.
T Consensus 177 ~~k~~~~~~~~~~~Y~~~l~~~n~~~-~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l 231 (258)
T cd07655 177 VEKCKQEVSKTKDKYEKALEDLNKYN-PRYMEDMEQVFDKCQEFEEKRLDFFKEIL 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788889999998887776 45777899999988877666555555533
No 27
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=70.59 E-value=1.4e+02 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHH
Q 006092 587 EALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA 639 (661)
Q Consensus 587 e~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~ 639 (661)
+.+.+++++...-|...++.++.---.-+-+.+|.||..|-++-..|-.+...
T Consensus 168 e~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~ 220 (234)
T cd07652 168 DELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRL 220 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 57888999999999999888776555556688999999999998888776543
No 28
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=70.37 E-value=1.4e+02 Score=30.96 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=75.0
Q ss_pred HHHHhhhcccccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 006092 375 SETCSSILNVIDEE-LYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYN 453 (661)
Q Consensus 375 dsis~~I~kLRDeE-L~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~W~~ 453 (661)
|+..++|+.|||.+ .|-+|+++...|++-.-.|..+|+.=-.+..++. . .+++.+ -+.
T Consensus 2 d~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~-~-----re~~p~---------------l~e 60 (215)
T cd07659 2 DGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIG-V-----REPQPA---------------ASE 60 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-----cCCChh---------------HHH
Confidence 45678899999864 6889999999999999999988887766666652 1 122222 235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006092 454 SFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEER 533 (661)
Q Consensus 454 sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~eE~ 533 (661)
.|...-.+||.+.+ ..+..+.||+-|+++|++++.+=.+.-
T Consensus 61 eF~~~ae~hR~l~k---------------------------------------~G~~ll~ai~~~~s~l~T~l~KaipDT 101 (215)
T cd07659 61 AFTKFGEAHRSIEK---------------------------------------FGIELLKTLKPMLSDLGTYLNKAIPDT 101 (215)
T ss_pred HHHHhHHHHHHHHH---------------------------------------hHHHHHHHhHHHHHHHHHHHHhhCchH
Confidence 68888888888765 235677899999999999998877665
Q ss_pred HHh
Q 006092 534 KLH 536 (661)
Q Consensus 534 ~~k 536 (661)
++-
T Consensus 102 ~lT 104 (215)
T cd07659 102 KLT 104 (215)
T ss_pred HHH
Confidence 544
No 29
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=70.08 E-value=1.4e+02 Score=30.84 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTEC 478 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~ 478 (661)
+..-.|-........+...+.++|+.|+.+|+.-=.-|+-
T Consensus 16 ~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~ig 55 (207)
T cd07634 16 KFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3456677778888889999999999999999998776764
No 30
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.97 E-value=1.4e+02 Score=30.69 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 006092 442 AQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSA 521 (661)
Q Consensus 442 ~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~ 521 (661)
..|-.-....+.+...++++|+.|+.+|+.-=..| +.|..+.++++.|+..
T Consensus 19 ~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~-----------------------------~~D~~i~~~l~kFs~~ 69 (200)
T cd07639 19 EKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHG-----------------------------PKDPMMAECLEKFSDG 69 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------------------CCCchhHHHHHHHHHH
Confidence 34444455555666666666666666666543212 2222366677777776
Q ss_pred HHHHHHhhHH-----HHHHh-----------hhhhHHHHHHHHHHHHHHHHHHhhh
Q 006092 522 IHAIFLQQIE-----ERKLH-----------KKIDRLEKRLQKEFNSMAEMEQRFE 561 (661)
Q Consensus 522 v~~i~~~Q~e-----E~~~k-----------~k~e~~~kelekk~~~l~~~e~k~~ 561 (661)
+..|...+.+ +.-.. +++..+.|.|+|-...++..-.|+.
T Consensus 70 l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~ 125 (200)
T cd07639 70 LNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNA 125 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHh
Confidence 6666444322 11111 2344666777777777776666654
No 31
>smart00721 BAR BAR domain.
Probab=69.58 E-value=52 Score=33.11 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=57.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhcCCch--hhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHH
Q 006092 321 KEVKEEERTKVEHEKKSMILQKQDEENHDW--TKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLIS 398 (661)
Q Consensus 321 ~EVKa~E~~r~~yekK~~~Lr~~d~rg~~~--~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~ 398 (661)
+.+|-.+..|+.||.....|.++..++... .++.+++..++.....+.-.-.-+-.---.+...|.+.+.|+|..|+.
T Consensus 138 ~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~ 217 (239)
T smart00721 138 KARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIE 217 (239)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 445677999999999998887775554332 166666666666666666544444444445556666678888888887
Q ss_pred HHHHHHHHHH
Q 006092 399 GLMRMWRKMY 408 (661)
Q Consensus 399 GL~~MWk~M~ 408 (661)
.-..-.+.++
T Consensus 218 aq~~y~~~~~ 227 (239)
T smart00721 218 AQLNFHRESY 227 (239)
T ss_pred HHHHHHHHHH
Confidence 7555444433
No 32
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=69.45 E-value=1.6e+02 Score=31.30 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=92.4
Q ss_pred HHHHHhHHHHH----HHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccC---Ch--HHHHHHH-HHH
Q 006092 449 TSWYNSFCKLT----KFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKL---PE--KVASEAI-NSF 518 (661)
Q Consensus 449 ~~W~~sF~~~i----~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~l---p~--~~v~~aI-k~f 518 (661)
..|+.-+..|+ ..-+.|.+.|..|.++....++ ..|.+..|+..|...+..+ .. ..+.+.| ...
T Consensus 18 ~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~------~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~ 91 (258)
T cd07680 18 HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIE------KGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNED 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555554 3468899999999997553221 1345678888888765432 11 1111111 111
Q ss_pred HHHH--------HHHHHhhHHHHH---------Hh------hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 006092 519 LSAI--------HAIFLQQIEERK---------LH------KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSP 575 (661)
Q Consensus 519 ~~~v--------~~i~~~Q~eE~~---------~k------~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~ 575 (661)
...| |.-+.++-.|.+ || ++++...|.|++..+.-+....++..-.+ + + ...
T Consensus 92 ~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~--d--~-~~s 166 (258)
T cd07680 92 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKA--E--Q-SVT 166 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--c--C-CCC
Confidence 1111 111111111111 11 23455555666555544444333321110 1 1 111
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHH
Q 006092 576 KHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAF 637 (661)
Q Consensus 576 ~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~ay 637 (661)
...+..=+..++.++.-+++.+..|...+...... -..-..-+|.||+.+-.|=..-+.-+
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~fl 227 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFL 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333334678888888999999999999888665 45557778888887776644444333
No 33
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=69.45 E-value=1.4e+02 Score=30.72 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHH
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSF 518 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f 518 (661)
+....|-........+...+.++||.|+.+|+..=.-|+-....+ .+..+.++++.|
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tD-----------------------De~~i~~~L~kF 72 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTD-----------------------DEIEIAESLKEF 72 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcc-----------------------cHHHHHHHHHHH
Confidence 345566666777777888888888888888888776555311100 112345677777
Q ss_pred HHHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 006092 519 LSAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEGN 563 (661)
Q Consensus 519 ~~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~~ 563 (661)
+..|..|-..+..=..+- +.+....|.|+|....++..-.|+...
T Consensus 73 ~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~l 133 (207)
T cd07602 73 GRLIETVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNL 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777665544433211110 234456678888888888888887643
No 34
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=69.00 E-value=1.3e+02 Score=30.23 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006092 589 LKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHS 642 (661)
Q Consensus 589 lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~ 642 (661)
..+.+++.++.|... -+.|+.-||.+|+.-..|-..|+.+|=.+-.
T Consensus 131 ~e~~l~~a~~~y~~l--------N~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~ 176 (195)
T cd07589 131 VDEELEEAANQYEAL--------NAQLKEELPKFNQLTAQLLETCLKSFVELQR 176 (195)
T ss_pred hHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666322 2568999999999999999999998866544
No 35
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=66.80 E-value=9.5 Score=43.60 Aligned_cols=31 Identities=10% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHhh----------ccCChHHHHHHHHHHHHHHHH
Q 006092 494 RLCENWQLVF----------DKLPEKVASEAINSFLSAIHA 524 (661)
Q Consensus 494 ~lc~~W~~~l----------d~lp~~~v~~aIk~f~~~v~~ 524 (661)
++||.|+..| -.+--..++.-|..|+..-++
T Consensus 605 r~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRT 645 (817)
T KOG1925|consen 605 RVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRT 645 (817)
T ss_pred HHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhh
Confidence 4677776543 333446677777888766544
No 36
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.36 E-value=1.7e+02 Score=31.02 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccc
Q 006092 306 CITLAKLYATEQKLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVI 385 (661)
Q Consensus 306 ssTLdkLyaWEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLR 385 (661)
..+++.+..| .+++ ++-++.|..|+..|...-++-.-|+....|||++.-++.....|..+++..+.+-. +
T Consensus 116 ~~~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~ 186 (269)
T cd07673 116 AGTLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----D 186 (269)
T ss_pred hhHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 3567777777 4444 45567789999999887666666777788888888888877777777776665422 2
Q ss_pred cchhhhHHHHHHHH
Q 006092 386 DEELYPQLATLISG 399 (661)
Q Consensus 386 DeEL~PQL~eLi~G 399 (661)
=++-+|+..+-+|-
T Consensus 187 ~~~~m~~~~~~~Q~ 200 (269)
T cd07673 187 FEQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 25666766666654
No 37
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=66.23 E-value=1.2e+02 Score=28.57 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006092 392 QLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTL 469 (661)
Q Consensus 392 QL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aL 469 (661)
.+-.|+.....|...+.++...+......+..+.......... .|-..+..+...+..+......|+..+
T Consensus 8 ~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~l~~~l~~~~~~~~~l~~~~~~~~~~~ 77 (194)
T cd07307 8 LLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNT--------DLGEALEKFGKIQKELEEFRDQLEQKL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888888888888888877776544332211 455566666666666665555555544
No 38
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.78 E-value=1.7e+02 Score=30.29 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
.+.+|-........+...+..+|+.|+.+|+..=+.. |.+| -.|..++.+++.|+
T Consensus 17 ~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~----------------f~~~---------~dDe~~~~~l~kFs 71 (215)
T cd07601 17 YMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQK----------------FELG---------RDDEILVSTLKQFS 71 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cCCC---------CCcHHHHHHHHHHH
Confidence 4556666666666666677777777777666543210 0001 34555667777777
Q ss_pred HHHHHHHHhhHHHHHH-----h-----------hhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006092 520 SAIHAIFLQQIEERKL-----H-----------KKIDRLEKRLQKEFNSMAEMEQRFEG 562 (661)
Q Consensus 520 ~~v~~i~~~Q~eE~~~-----k-----------~k~e~~~kelekk~~~l~~~e~k~~~ 562 (661)
..+..|...+..=..+ . +.+..+.|.|+|-...++..-.|+..
T Consensus 72 ~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~ 130 (215)
T cd07601 72 KVVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSR 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 7776655443321110 0 23446667777777777777777754
No 39
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.28 E-value=1.8e+02 Score=30.31 Aligned_cols=92 Identities=14% Similarity=0.223 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHhhccCCh----------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006092 489 SSTIRRLCENWQLVFDKLPE----------KVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQ 558 (661)
Q Consensus 489 ~ppIf~lc~~W~~~ld~lp~----------~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~ 558 (661)
.|....+|++|...++.|.+ +-|++=|+.|.+.+..|=. ..+ |.+.-.-|+++....++.+..
T Consensus 64 ~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~------~I~-KR~~Kl~DYD~~r~~~~kl~~ 136 (225)
T cd07590 64 NDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNA------AIK-RREQSLQEYERLQAKVEKLAE 136 (225)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-HHHhHHHHHHHHHHHHHHHHh
Confidence 46677799999988877653 2356777777777766611 121 223333567776666666554
Q ss_pred hhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006092 559 RFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAA 604 (661)
Q Consensus 559 k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~ 604 (661)
|-. ++ .+..+|...++.++..+..|....
T Consensus 137 K~~--------------k~---~~~~KL~kae~el~~Ak~~ye~~N 165 (225)
T cd07590 137 KEK--------------TG---PNLAKLEQAEKALAAARADFEKQN 165 (225)
T ss_pred Ccc--------------CC---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 01 112467777888888888886554
No 40
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.82 E-value=1.8e+02 Score=29.97 Aligned_cols=100 Identities=8% Similarity=0.021 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
..-.|......-..+...+..+||.|+.+|+..=.-|+-.... =.+..+.++++.|+
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~t-----------------------dde~~I~~sL~~F~ 73 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLT-----------------------DDEINIAESFKEFA 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-----------------------chHHHHHHHHHHHH
Confidence 3445666667777888899999999999999877766531110 02334668888888
Q ss_pred HHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006092 520 SAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEG 562 (661)
Q Consensus 520 ~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~ 562 (661)
..+..|...+..=..+- +++....|.|+|....+...-.|+..
T Consensus 74 ~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~ 132 (207)
T cd07633 74 ELLQEVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVN 132 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhc
Confidence 88877766554311111 23455567778877777776666643
No 41
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=63.45 E-value=9.9 Score=49.53 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.2
Q ss_pred chhhhhhhcCC
Q 006092 239 KEIAVLVDINK 249 (661)
Q Consensus 239 ~eVs~mLEa~k 249 (661)
+-++.=||+++
T Consensus 1888 ~G~taSLEaGY 1898 (2039)
T PRK15319 1888 TANAVSLETGY 1898 (2039)
T ss_pred EEEEEEEEcce
Confidence 34444455553
No 42
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.69 E-value=1.8e+02 Score=29.38 Aligned_cols=184 Identities=15% Similarity=0.243 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc--cccCCCCCCCCChHHHHHHHHHHhhccCChH----
Q 006092 436 YHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTEC--LVDEHQRSNCSSTIRRLCENWQLVFDKLPEK---- 509 (661)
Q Consensus 436 ~h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~--~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~---- 509 (661)
..++-.-.||.-|..-+..+..+++.++++..++..--..... ..+. .+++-..|..-..+++++.+-
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~------~~~l~~~l~~l~~~~~~~~~~~~~~ 101 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEE------EKSLSEALSQLAEAFEKISELLEEQ 101 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC------CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999999888765442111 1111 122333333333333333221
Q ss_pred ------HHHHHHHHHH---HHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhh
Q 006092 510 ------VASEAINSFL---SAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLI 580 (661)
Q Consensus 510 ------~v~~aIk~f~---~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~ 580 (661)
...+.|+-++ .+|+.++.+... ...-.+.+.+++.++...+..+...-. ++.+-+.
T Consensus 102 a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~---~~~~~~~a~~~l~kkk~~~~kl~~~~~------------~~~~k~~ 166 (236)
T PF09325_consen 102 ANQEEETLGEPLREYLRYIESVKEALNRRDK---KLIEYQNAEKELQKKKAQLEKLKASGK------------NRQDKVE 166 (236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccch------------hhhHHHH
Confidence 1122232222 222222222211 112235666777777776665443210 1112233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhCCHHHHHHHHHHHHHHHHHHHHH
Q 006092 581 LKAAKVEALKKRVESEKAKYLNAARITQA-------MTLNNLKTSLPNVFQALMGFSNASAKAFEAL 640 (661)
Q Consensus 581 ~kr~~le~lrkrle~e~~~~~~~~~~tr~-------~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l 640 (661)
.-..+++.++++++..+..|.......+. -....++..|-..-+....|...++++++.+
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33456677777777666666655444332 2234455555555555666666666666554
No 43
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.60 E-value=1.1e+02 Score=29.95 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHhhhhhcCC-chhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhc
Q 006092 327 ERTKVEHEKKSMILQKQDEENH-DWTKIEKIRLSVDSLEVDIRRLQHSISETCSSIL 382 (661)
Q Consensus 327 E~~r~~yekK~~~Lr~~d~rg~-~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~ 382 (661)
+.+.....+|-+.|.++...+. ...+|++++..|..++..+..+..-.+.|+..|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777665 7789999999999999999999999988887765
No 44
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.01 E-value=2.1e+02 Score=29.78 Aligned_cols=42 Identities=7% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQAL 626 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al 626 (661)
.+++.++.+++.....|...|......... ...-+|.+|+.+
T Consensus 150 k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~-~~~~m~~~~~~~ 191 (261)
T cd07648 150 KEIEKAEAKLKKAQDEYKALVEKYNNIRAD-FETKMTDSCKRF 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 378899999999999999999888765544 567777777443
No 45
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=59.47 E-value=2.2e+02 Score=29.40 Aligned_cols=101 Identities=9% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCCh-HHHHHHHH
Q 006092 438 HQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPE-KVASEAIN 516 (661)
Q Consensus 438 ~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~-~~v~~aIk 516 (661)
.+....|.........+...+.++||.|+.+|+..=.-|+-... ..| ..+.++++
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~------------------------~dDe~~I~~~L~ 70 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAE------------------------TDDEICIARSLQ 70 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc------------------------cccHHHHHHHHH
Confidence 34567777777888888889999999999999998776653211 111 12336666
Q ss_pred HHHHHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006092 517 SFLSAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEG 562 (661)
Q Consensus 517 ~f~~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~ 562 (661)
.|+..+..|...+..=..+- +++....|.|+|....++..-.|+..
T Consensus 71 kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ 132 (207)
T cd07636 71 EFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLN 132 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhc
Confidence 66666655544433211110 23456667888888888888777754
No 46
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.14 E-value=1.9e+02 Score=35.26 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHH
Q 006092 511 ASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALK 590 (661)
Q Consensus 511 v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lr 590 (661)
+..|++.|-.- -|..++.-....++|+..+..+.++++..|+.++.+... + +..-+.|.
T Consensus 541 L~~a~~vlree--Yi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~----------------l---~~~ae~La 599 (717)
T PF10168_consen 541 LSQATKVLREE--YIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKS----------------L---RESAEKLA 599 (717)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H---HHHHHHHH
Confidence 44455555431 223333334455677888888888888888887765432 1 12446677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHH
Q 006092 591 KRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNAS 633 (661)
Q Consensus 591 krle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~ 633 (661)
.|+|+..+++...++-... -+..++..+|.+=.|=.+|..+.
T Consensus 600 eR~e~a~d~Qe~L~~R~~~-vl~~l~~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDR-VLQLLNSQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccCCCCCHHHHHHHHHH
Confidence 7888888888777654432 24566777886555544554443
No 47
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=57.14 E-value=2.4e+02 Score=29.13 Aligned_cols=198 Identities=11% Similarity=0.102 Sum_probs=92.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhh---ccCCh
Q 006092 432 FTTDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVF---DKLPE 508 (661)
Q Consensus 432 ~~s~~h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~l---d~lp~ 508 (661)
...+.|+.....|-.-+...+.+-..++++++.|+.+|..-=..|+-. ..|-|-.........+ ..+-+
T Consensus 9 e~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~--------~~~~i~~~l~kF~~~l~El~~~~~ 80 (215)
T cd07604 9 ESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSR--------EEEDLGAAFLKFSVFTKELAALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCc--------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777778888888888888887733222210 0111111111121111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCC-CCCCCCCChh--hhhHHH
Q 006092 509 KVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVE-HPELSPKHPL--ILKAAK 585 (661)
Q Consensus 509 ~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~-~~~~~~~~~~--~~kr~~ 585 (661)
.-+..+-..+..-+..++.-+-..- .+.+.|.|+|....++....++...+. .+. ...+- +.++ .+=-..
T Consensus 81 ~L~~~~~~~i~~pL~~f~k~dL~~~-----k~e~KK~fdK~s~~ye~~~~k~~k~Kk-~~~~~~~~~-r~e~~~~e~~~~ 153 (215)
T cd07604 81 NLMQNLNNIIMFPLDSLLKGDLKGS-----KGDLKKPFDKAWKDYETKASKIEKEKK-QLAKEAGMI-RTEITGAEIAEE 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhhhhhc-chhhhhhhHHHH
Confidence 2222222222222222222221110 013334444444433333333321111 000 00000 0001 111236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006092 586 VEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHI 644 (661)
Q Consensus 586 le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~ 644 (661)
++.-|+....+.-.|--.+..+++.---.+-..|-..|+|...|-....++++++..+.
T Consensus 154 l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 154 MEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66777777777777766666666654444555666777777777777777777765543
No 48
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=56.32 E-value=2.5e+02 Score=29.06 Aligned_cols=173 Identities=16% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc--------cccC----------CCCCCCC--ChHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTEC--------LVDE----------HQRSNCS--STIRRLCENW 499 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~--------~~~~----------~~~~~~~--ppIf~lc~~W 499 (661)
--.+||.++..++....+++++=..||+ ||.+-.- .|.. ..+.... -.....|.+=
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~----~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a 83 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVE----YLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRA 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Confidence 3578999999999999999999999988 4443320 0100 0111111 1123345555
Q ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChh
Q 006092 500 QLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPL 579 (661)
Q Consensus 500 ~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~ 579 (661)
...|..+-+.-+.....+|+..|+.... +..+ ....+|.|+.+...++....|+..-.. . +
T Consensus 84 ~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~------i~k~RKkLe~rRLdyD~~ksk~~kak~-~---------~-- 144 (215)
T cd07593 84 HCKIGTLQEEFADRLSDTFLANIERSLA-EMKE------YHSARKKLESRRLAYDAALTKSQKAKK-E---------D-- 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHhccc-c---------c--
Confidence 5555555555556666677777766654 2222 223445566666666666655542211 0 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006092 580 ILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKT-------SLPNVFQALMGFSNASAKAFEALHSH 643 (661)
Q Consensus 580 ~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~-------gLp~vF~al~~Fs~~~~~aye~l~~~ 643 (661)
..++..++.+..+|..+..++...= -++.. .|-.+.+|-.+|=..|.+.+++|...
T Consensus 145 -------~~~eeElr~Ae~kfees~E~a~~~M-~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 207 (215)
T cd07593 145 -------SRLEEELRRAKAKYEESSEDVEARM-VAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQS 207 (215)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1245566666777777766665421 23333 46666677777777788887777654
No 49
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=55.46 E-value=9.9 Score=41.33 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=17.8
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhHhhhcc
Q 006092 26 QLVGVRGQFAEAQLAYLRALKNTGVTLRQF 55 (661)
Q Consensus 26 ~av~~R~~laaah~~y~~sLr~~g~al~~F 55 (661)
++|+.=..+-.+-..|+...-.||..+..-
T Consensus 183 eWvks~~~l~~~L~~YVke~httGl~WN~~ 212 (312)
T PF01213_consen 183 EWVKSFKALLKELQAYVKEHHTTGLSWNPK 212 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTS----TT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCcccCCc
Confidence 355555555566778999998998877643
No 50
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.70 E-value=2.6e+02 Score=28.57 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006092 437 HHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGW 472 (661)
Q Consensus 437 h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~W 472 (661)
=+..+.+|-.....|..+...+..+++.|+.+|..-
T Consensus 13 l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f 48 (202)
T cd07606 13 LRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEF 48 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777778888888888888888887665
No 51
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.95 E-value=1.1e+02 Score=30.93 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHhhhhhcC-CchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHH
Q 006092 327 ERTKVEHEKKSMILQKQDEEN-HDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWR 405 (661)
Q Consensus 327 E~~r~~yekK~~~Lr~~d~rg-~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk 405 (661)
+.+.-.++||-..+.++...| ....+++.....|..+..++..+-+..+.|+..|.+=.+.==.=...++-..|..+..
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888887774 3458999999999999999999999999999876531111111223445555555556
Q ss_pred HHHHHHHHHHHH
Q 006092 406 KMYECLQVQNHI 417 (661)
Q Consensus 406 ~M~ecH~~Q~~i 417 (661)
.+.++|+....+
T Consensus 218 ~~i~~~~~~~~~ 229 (236)
T PF09325_consen 218 SQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 52
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=52.09 E-value=2.1e+02 Score=26.87 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 006092 585 KVEALKKRVESEKAKYLNAARITQAMTLNNLKTS-LPNVFQALMGFSNASAKAFEALHS 642 (661)
Q Consensus 585 ~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~g-Lp~vF~al~~Fs~~~~~aye~l~~ 642 (661)
++......++..+..|.......... ++.|+.+ .+.+...|..|...-+..|+....
T Consensus 129 ~l~~~~~~~~~ar~~y~~~~~~~~~~-l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~ 186 (194)
T cd07307 129 KLAEAEEELQEAKEKYEELREELIED-LNKLEEKRKELFLSLLLSFIEAQSEFFKEVLK 186 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555666666666666654443322 2223222 223444555555555555554433
No 53
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=49.73 E-value=3.2e+02 Score=28.41 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=91.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHH
Q 006092 445 EAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLP--EKVASEAINSFLSAI 522 (661)
Q Consensus 445 e~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp--~~~v~~aIk~f~~~v 522 (661)
-.-+..-+.+=..+|.+++.||.+|+.-=..|+.+.+ |.|- .++.++. -+++..-.+.++..+
T Consensus 22 ~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd--------~~i~-------~a~~kfs~~~~El~~~~k~L~~~~ 86 (215)
T cd07641 22 KKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDN--------PDLG-------TAFVKFSTLTKELSTLLKNLLQGL 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--------hhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566788888888888877666654332 2222 2233322 256666777777777
Q ss_pred HHHHHhhHHHHHHh--hhhh-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC-hhhhhHHHHHHHHHHHHHHHH
Q 006092 523 HAIFLQQIEERKLH--KKID-RLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKH-PLILKAAKVEALKKRVESEKA 598 (661)
Q Consensus 523 ~~i~~~Q~eE~~~k--~k~e-~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~-~~~~kr~~le~lrkrle~e~~ 598 (661)
..|+..|-+-.=.. |++. .+.|.|+|-.+.++.--.|.....-......+..+.. --.+=-..++.-|+-..-..=
T Consensus 87 ~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~ 166 (215)
T cd07641 87 SHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMC 166 (215)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHH
Confidence 77776665421111 2233 3444444444443333333221100000000000000 000111245555666665555
Q ss_pred HHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006092 599 KYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHI 644 (661)
Q Consensus 599 ~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~ 644 (661)
.|.-.|.+.+...=--+-.+|-..|+|-..|-..-.++.+++..+.
T Consensus 167 dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~ 212 (215)
T cd07641 167 EYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI 212 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666555555543333334566777777777777777777776544
No 54
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.34 E-value=3.5e+02 Score=28.42 Aligned_cols=43 Identities=5% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALM 627 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~ 627 (661)
.+++.++.|++.....|.+++..+.... ..+...+|.||+.+-
T Consensus 150 k~leK~~~K~~ka~~~y~~~~~ky~~~~-~~~~~~m~~~~~~~Q 192 (261)
T cd07674 150 KELEKAELKTKKAAESLRGSVEKYNRAR-GDFEQKMLESAQKFQ 192 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4788888888888888999888877654 447788888887554
No 55
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.24 E-value=14 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=9.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHh
Q 006092 304 AHCITLAKLYATEQKLYKEVKE 325 (661)
Q Consensus 304 shssTLdkLyaWEKKLY~EVKa 325 (661)
+|-..|-=+|-.--||-.-+||
T Consensus 613 NhvGqLTGiYRYKYklM~QIra 634 (2365)
T COG5178 613 NHVGQLTGIYRYKYKLMKQIRA 634 (2365)
T ss_pred hcchhheehhHHHHHHHHHHHH
Confidence 3444444444444444444443
No 56
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=48.10 E-value=1.1e+02 Score=31.56 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=41.5
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhcC--Cchhhh-------HHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHH
Q 006092 324 KEEERTKVEHEKKSMILQKQDEEN--HDWTKI-------EKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLA 394 (661)
Q Consensus 324 Ka~E~~r~~yekK~~~Lr~~d~rg--~~~~~i-------dkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~ 394 (661)
++-++.|..|++.|..++.....+ .....+ +|++..|......|.++++....+-.. =++-+|.++
T Consensus 121 ~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~-----~~~~~~~~~ 195 (236)
T cd07651 121 KYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEI-----WNREWKAAL 195 (236)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 355788999999998887665432 122234 445555555556666666655544331 234446666
Q ss_pred HHHHH
Q 006092 395 TLISG 399 (661)
Q Consensus 395 eLi~G 399 (661)
+.+|-
T Consensus 196 ~~~Q~ 200 (236)
T cd07651 196 DDFQD 200 (236)
T ss_pred HHHHH
Confidence 55554
No 57
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=48.09 E-value=3.4e+02 Score=28.23 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=103.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHH
Q 006092 434 TDYHHQATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASE 513 (661)
Q Consensus 434 s~~h~~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~ 513 (661)
-|.-|.....+..-|..-|.+=..+|.+++.|+.+|..-=..|++..+ +.. --.|.-+-.-. .++..
T Consensus 11 l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd--~~~---~~~l~kf~~~~--------~El~~ 77 (215)
T cd07642 11 LDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDD--PDL---GSAFLKFSVFT--------KELTA 77 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc--HHH---HHHHHHHHHHH--------HHHHH
Confidence 344556667788888999999999999999999999887666775321 111 12222233333 34444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH--hhhh-hHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChh-hhhHHHHHHH
Q 006092 514 AINSFLSAIHAIFLQQIEERKL--HKKI-DRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPL-ILKAAKVEAL 589 (661)
Q Consensus 514 aIk~f~~~v~~i~~~Q~eE~~~--k~k~-e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~-~~kr~~le~l 589 (661)
-.+.+...+..++..+-+-.=. -|++ +.+.|.++|....++....|............+..+.... .+=-..+++-
T Consensus 78 l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~ 157 (215)
T cd07642 78 LFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKE 157 (215)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHH
Confidence 4445555555555444432211 1233 2444555555554444433332111000000001000000 1112356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006092 590 KKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHI 644 (661)
Q Consensus 590 rkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~ 644 (661)
|+-...+.--|.-.+...+..---.|-..|-..|+|-..|-..-.+..++|-.+.
T Consensus 158 R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 158 RRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777766666665555555544444555566667777777777777776665544
No 58
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=48.01 E-value=4e+02 Score=29.15 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhH
Q 006092 507 PEKVASEAINSFLSAIHAIFLQQIEERKLH---KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKA 583 (661)
Q Consensus 507 p~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k---~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr 583 (661)
...+......+..+.+..|+.= |.|+= |--|.++.+++||.+.|+..+.|-.. +
T Consensus 72 ~~~~~~~~~gshssTLdkLyaW---EKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg~~---------------~----- 128 (312)
T PF04782_consen 72 FDEEECMGSGSHSSTLDKLYAW---EKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKGAD---------------S----- 128 (312)
T ss_pred cCcccCcccchHHHHHHHHHHH---HHHHHHHHHccHHHHHHHHHHHHHHHHHHhCCcc---------------H-----
Confidence 3444455567777888777642 22222 23477889999999999998865221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLN 613 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~ 613 (661)
.++|..|.-++.-..++.-+++.+.+.+..
T Consensus 129 ~kidkTra~v~~L~tri~Vaiq~v~siS~~ 158 (312)
T PF04782_consen 129 SKIDKTRASVKDLHTRIRVAIQSVDSISKR 158 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256666766666666666666666655543
No 59
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=47.56 E-value=14 Score=42.10 Aligned_cols=7 Identities=43% Similarity=0.956 Sum_probs=2.5
Q ss_pred CCCCCCC
Q 006092 87 PPPPFSP 93 (661)
Q Consensus 87 P~Pp~sp 93 (661)
|.|.+.|
T Consensus 21 P~PePtP 27 (465)
T PF01690_consen 21 PTPEPTP 27 (465)
T ss_pred ccCCCcc
Confidence 3333333
No 60
>PHA03211 serine/threonine kinase US3; Provisional
Probab=46.92 E-value=20 Score=40.72 Aligned_cols=7 Identities=14% Similarity=-0.149 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 006092 229 DYFLKAS 235 (661)
Q Consensus 229 ~~F~kAs 235 (661)
..+.++.
T Consensus 146 ~~~~~~~ 152 (461)
T PHA03211 146 REAARAI 152 (461)
T ss_pred hhhhhhc
Confidence 3344333
No 61
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=46.72 E-value=70 Score=35.75 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 006092 12 ERVQICRQ 19 (661)
Q Consensus 12 eav~~Cke 19 (661)
-++.-|.+
T Consensus 313 ~~l~a~qe 320 (442)
T PF06637_consen 313 QGLQASQE 320 (442)
T ss_pred HHHHHHHH
Confidence 34444444
No 62
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.91 E-value=3.8e+02 Score=28.20 Aligned_cols=66 Identities=6% Similarity=0.156 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 006092 490 STIRRLCENWQLVFDKLPE---KVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFE 561 (661)
Q Consensus 490 ppIf~lc~~W~~~ld~lp~---~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~ 561 (661)
.|+=.....|..+..+|-+ .--....++|..-++.++..+-.+.+ ..+|.++.+...|+....++.
T Consensus 103 s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~------k~RKkle~~RLd~D~~K~~~~ 171 (242)
T cd07600 103 DPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAH------KARKKVEDKRLQLDTARAELK 171 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888877 44556678899999998887755443 233455555555555555553
No 63
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=45.21 E-value=3.7e+02 Score=28.96 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred hhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006092 342 KQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRL 421 (661)
Q Consensus 342 ~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~ 421 (661)
++..++-+..+|-..+..+..++....|+--.+..+... -|=.+|.-+|.+|.||=++|..|..-.
T Consensus 156 kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~--------------~lKEa~~~~f~Al~E~aEK~~Ila~~g 221 (271)
T PF13805_consen 156 KLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ--------------KLKEAYSLKFDALIERAEKQAILAEYG 221 (271)
T ss_dssp HHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788888888888888888887666666654 567899999999999999999777754
Q ss_pred hccCC----CCC--CCCCc-----hhHHHHHHHHHHHHHHHHH
Q 006092 422 NHVTD----NQS--MDFTT-----DYHHQATAQLEAEVTSWYN 453 (661)
Q Consensus 422 ~~l~~----~~~--~~~~s-----~~h~~at~qLe~el~~W~~ 453 (661)
|.|-. .+. +.... +.-+++....|..|..|..
T Consensus 222 k~Ll~lldd~pv~PG~~r~~Y~g~~~t~qIl~dAe~~L~~w~~ 264 (271)
T PF13805_consen 222 KRLLELLDDTPVVPGDTRPPYDGYEQTRQILNDAERALRSWQP 264 (271)
T ss_dssp HHHHTTS------TTS-------HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhCcc
Confidence 44432 211 11111 2223444566677777754
No 64
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=43.86 E-value=18 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=21.0
Q ss_pred cCcHHHHHHHHHHHHHHHhcccchhhhhh
Q 006092 217 KKTLDGIIKELDDYFLKASAGGKEIAVLV 245 (661)
Q Consensus 217 ~kdl~ev~keI~~~F~kAs~sg~eVs~mL 245 (661)
.|||++++++||--|+|.+-+|......+
T Consensus 4 ~k~ll~iLk~iDqdLvK~AisGe~Fqe~F 32 (48)
T PF12408_consen 4 YKDLLDILKAIDQDLVKTAISGERFQECF 32 (48)
T ss_dssp S--HHHHHHHS-HHHHHHHT-SHHHHHHH
T ss_pred hhhHHHHHHHhCHHHHHHHhccHHHHHHH
Confidence 36999999999999999999997655443
No 65
>PRK14153 heat shock protein GrpE; Provisional
Probab=43.59 E-value=1.9e+02 Score=29.51 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 006092 530 IEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYL 601 (661)
Q Consensus 530 ~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~ 601 (661)
.+|++...+.+.+..+++.....+.++..+|.- ..+..+.+|+|++.|++...
T Consensus 26 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR-------------------~~AEfeN~rKR~~kE~e~~~ 78 (194)
T PRK14153 26 AEELKEEPEDSTADSETEKCREEIESLKEQLFR-------------------LAAEFDNFRKRTAREMEENR 78 (194)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 455665555666667776666666666666641 14688999999988877653
No 66
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.64 E-value=5.9e+02 Score=29.42 Aligned_cols=107 Identities=7% Similarity=0.089 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
.+..|-.++.+|..+.+.++.+|+..-+.|.. ++.|+.. -.-..--|+.+|+.--..++..=.+-|+.-|..|.
T Consensus 45 e~~kLqkd~k~y~~av~am~~a~~~l~e~l~e-----iy~p~~~-g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~ 118 (460)
T KOG3771|consen 45 EGKRLQKDLKNYLDAVRAMLAASKKLAESLQE-----IYEPDWP-GRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYL 118 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 55677788888888888888888877666532 2222100 00014456666665444455444566777788888
Q ss_pred HHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 006092 520 SAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQR 559 (661)
Q Consensus 520 ~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k 559 (661)
..+-.| ..+..||-. ---||++....|+.++.+
T Consensus 119 ~~fpdi------k~~i~KR~~-Kl~DyD~~r~~~~kvq~~ 151 (460)
T KOG3771|consen 119 GQFPDI------KKAIAKRGR-KLVDYDSARHSFEKLQAK 151 (460)
T ss_pred hhchhH------HHHHHhhcc-hhhhhHHHHHHHHHHHHh
Confidence 776555 222222211 111677776666666543
No 67
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=42.02 E-value=37 Score=39.04 Aligned_cols=14 Identities=0% Similarity=-0.071 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhh
Q 006092 21 KRAMKQLVGVRGQF 34 (661)
Q Consensus 21 kr~~k~av~~R~~l 34 (661)
+.|+...|...+.-
T Consensus 289 ~~fi~~fi~k~~~~ 302 (569)
T KOG3671|consen 289 MKFIYDFIQKNPNG 302 (569)
T ss_pred ccccccchhcCCCC
Confidence 44444444444333
No 68
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=40.73 E-value=4.2e+02 Score=27.18 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFE 638 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye 638 (661)
.+++.....+...+..|...+..++...-- ...-+|.+|+.+-.|=..=++.+.
T Consensus 157 ~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~-~~~~~~~~~~~~Q~lEe~Ri~~lk 210 (236)
T cd07651 157 AKLNKAQSSINSSRRDYQNAVKALRELNEI-WNREWKAALDDFQDLEEERIQFLK 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666778899999888776543 566667777766554444333333
No 69
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=40.10 E-value=4.4e+02 Score=27.18 Aligned_cols=158 Identities=13% Similarity=0.201 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHH-HHHhhccCChHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCEN-WQLVFDKLPEKVASEAINSF 518 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~-W~~~ld~lp~~~v~~aIk~f 518 (661)
.|..|-.++..+..+.....++|+.+-++|.. ++.|.....+ ..-.|+..+.. |.+--+.| .+.|+.-|+.|
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~-----lY~p~~~~~~-~~~~v~e~~d~~~~~l~~~l-~~~Vl~Pl~~~ 99 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKE-----LYEPDWPGRE-HLASIFEQLDLLWNDLEEKL-SDQVLGPLTAY 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCccccHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45667777777777777788888888888752 3333321111 01223333332 44432333 67788888888
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 006092 519 LSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKA 598 (661)
Q Consensus 519 ~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~ 598 (661)
.+.+..|-..= ++ .+.-.=|+++-...++.+..|=. ++ ..+|-..++.++..+.
T Consensus 100 ~s~f~~i~k~I------~K-R~~KllDYDr~r~~~~kL~~K~~--------------kd-----e~KL~kae~el~~Ak~ 153 (211)
T cd07588 100 QSQFPEVKKRI------AK-RGRKLVDYDSARHNLEALKAKKK--------------VD-----DQKLTKAEEELQQAKK 153 (211)
T ss_pred HHHHHHHHHHH------HH-HhhHHHhHHHHHHHHHHHHhccc--------------cc-----HhhHHHHHHHHHHHHH
Confidence 88887773221 11 11111256666666665544311 11 1256667788888888
Q ss_pred HHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHH
Q 006092 599 KYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFE 638 (661)
Q Consensus 599 ~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye 638 (661)
.|.... +-|+.-||.+|+.=..|-.-|++++-
T Consensus 154 ~Ye~lN--------~~L~~ELP~L~~~ri~f~~p~F~sl~ 185 (211)
T cd07588 154 VYEELN--------TELHEELPALYDSRIAFYVDTLQSIF 185 (211)
T ss_pred HHHHHH--------HHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 885443 33566666666655555555555443
No 70
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.80 E-value=4.9e+02 Score=27.64 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHH
Q 006092 583 AAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALM 627 (661)
Q Consensus 583 r~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~ 627 (661)
+.++|.++.++....+.|...+......+. -...-+|.+|+.+.
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-~~~~~m~~~~~~~Q 199 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKA-DFEQKMTETAQKFQ 199 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 458899999999999999999888776554 45666777666443
No 71
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=39.39 E-value=40 Score=38.81 Aligned_cols=8 Identities=25% Similarity=0.218 Sum_probs=3.3
Q ss_pred cccccccc
Q 006092 268 SAKVFSAL 275 (661)
Q Consensus 268 s~~vl~~~ 275 (661)
..++|..+
T Consensus 537 l~~~m~ar 544 (569)
T KOG3671|consen 537 LANLMDAR 544 (569)
T ss_pred HHHHHHHH
Confidence 33444433
No 72
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=38.67 E-value=4.8e+02 Score=27.29 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=77.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhcc---CCh--HHHHHHHHHHHHHHHHHHH
Q 006092 453 NSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDK---LPE--KVASEAINSFLSAIHAIFL 527 (661)
Q Consensus 453 ~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~---lp~--~~v~~aIk~f~~~v~~i~~ 527 (661)
..|..=+..-+.|-+.|..|-++... ...+..+...|...+.. +.. ..+...|.+-+..|..+..
T Consensus 26 ~f~keRa~iE~~Yak~L~kl~kk~~~----------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f~~ 95 (242)
T cd07671 26 ELLKQRAQAEERYGKELVQIARKAGG----------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEFRE 95 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999997542 12357788888766532 222 3444555555444555555
Q ss_pred hhHHHHHH---------------hhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHH
Q 006092 528 QQIEERKL---------------HKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKR 592 (661)
Q Consensus 528 ~Q~eE~~~---------------k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkr 592 (661)
-|.++.+. -++++...+.|+..-+..+...+.+.... +. .....+..-+.++...+..
T Consensus 96 ~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~------~~-~t~keleK~~~K~~k~~~~ 168 (242)
T cd07671 96 RQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSS------ST-GNPKQSEKSQNKAKQCRDA 168 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cc-CCHHHHHHHHHHHHHHHHH
Confidence 55553221 12334445555555555554433221110 00 1112233334566666667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006092 593 VESEKAKYLNAARITQA 609 (661)
Q Consensus 593 le~e~~~~~~~~~~tr~ 609 (661)
++..+..|...|.....
T Consensus 169 ~~~a~~~Y~~~v~~l~~ 185 (242)
T cd07671 169 ATEAERVYKQNIEQLDK 185 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888888775433
No 73
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=37.85 E-value=1.7e+02 Score=28.16 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=59.5
Q ss_pred hhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 006092 372 HSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTSW 451 (661)
Q Consensus 372 q~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~W 451 (661)
.+|-+|-++|.. +|...+=+=+.|++-++.=--....-.=.-...+.++..+.... .|...-..+-.-++.|
T Consensus 37 ~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-------~~~~Vk~kil~li~~W 108 (144)
T cd03568 37 DCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-------VHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-------CCHHHHHHHHHHHHHH
Confidence 444455555554 56555555666777655444333332333444555554443221 4556666667778999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 006092 452 YNSFCKLTKFQRDYVRTLSGWIKLTEC 478 (661)
Q Consensus 452 ~~sF~~~i~~Qk~Yv~aLn~WL~~~~~ 478 (661)
..+|.+ ..+-.||..++..|+.--+
T Consensus 109 ~~~f~~--~~~l~~i~~~y~~L~~~G~ 133 (144)
T cd03568 109 ADEFKN--DPSLSLMSDLYKKLKNEGP 133 (144)
T ss_pred HHHhCC--CcccHHHHHHHHHHHHcCC
Confidence 999995 4678899999999996444
No 74
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=36.38 E-value=5.2e+02 Score=26.97 Aligned_cols=113 Identities=10% Similarity=0.130 Sum_probs=64.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 006092 495 LCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEE-RKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPEL 573 (661)
Q Consensus 495 lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~ 573 (661)
.|.+=...|..+-+.-...+-.+|+.-++.++..+..+ ++.++|++.-+=+|+-+...+..-
T Consensus 97 ~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ka----------------- 159 (220)
T cd07617 97 KVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKA----------------- 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 35555555666666666677789999999999877744 445555555444555544333210
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------CCHHHHHHHHHHHHHHHHHHHHHH
Q 006092 574 SPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKT-------SLPNVFQALMGFSNASAKAFEALH 641 (661)
Q Consensus 574 ~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~-------gLp~vF~al~~Fs~~~~~aye~l~ 641 (661)
...++..+++|..+..+++. .+-++.. .|-.+.+|-..|-..|.+..++|.
T Consensus 160 ----------------e~elr~A~~kf~~~~E~a~~-~M~~il~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~ 217 (220)
T cd07617 160 ----------------EHELRVAQTEFDRQAEVTRL-LLEGISSTHVNHLRCLHEFVEAQATYYAQCYRHMLDLQ 217 (220)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11333444555555554444 2223333 355566666666666666666654
No 75
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=35.39 E-value=1.7e+02 Score=30.42 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=49.6
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccc
Q 006092 322 EVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDE 387 (661)
Q Consensus 322 EVKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDe 387 (661)
=||.-+..|++|+--|-.|.-++....+...+|.+-.-|+.-.-.++.-.+.-..--.+-.|||.+
T Consensus 104 TikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D 169 (215)
T cd07659 104 TIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999998877777777777666666666666666666666666666654
No 76
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.13 E-value=5.5e+02 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHH
Q 006092 582 KAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQAL 626 (661)
Q Consensus 582 kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al 626 (661)
.+..+.....+....++-|.-++..+++.--.-....||.||..|
T Consensus 188 ~k~k~~~~~~k~~~akNeYll~l~~aN~~~~~yy~~~lp~lld~l 232 (241)
T cd07656 188 RQAKYSEAKLKCTKARNEYLLNLAAANATIHKYFVQDLSDLIDCM 232 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 335566666677788888888888888877778889999999887
No 77
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.09 E-value=70 Score=35.27 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccccccccccccCCCCCCCCCCCCCCCCcCCCCCCCCCc
Q 006092 70 GPALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSVWDYLDPFTSSSP 142 (661)
Q Consensus 70 ~~~P~psp~pspPPpPPP~Pp~sp~~~~~~~~~~~~~~~~~~~~~~~~~~pPPPpPp~~ssWDffdPf~p~~~ 142 (661)
+.|++|+|.|+-.+-+||++|..++.. +|-|||||++..+ |.|+...+.
T Consensus 145 ~~~~~p~p~p~~~~~~~p~~p~~~~~~---------------------~p~p~p~~~~gas---~~~~~~~d~ 193 (365)
T KOG2391|consen 145 SLPSPPPPYPQTEYNTPPLKPKGSAYK---------------------PPLPPPPPPGGAS---ALPYMTDDN 193 (365)
T ss_pred CCCCCCCCCCcccCCCCCCCCCCcCcC---------------------CCCCCCCCCCccc---cCcccCCCC
No 78
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=35.04 E-value=99 Score=32.79 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=8.4
Q ss_pred cHHHHHHHHH
Q 006092 219 TLDGIIKELD 228 (661)
Q Consensus 219 dl~ev~keI~ 228 (661)
++++|+||+.
T Consensus 239 nMldVLKDmn 248 (253)
T PF05308_consen 239 NMLDVLKDMN 248 (253)
T ss_pred cHHHHHHhhh
Confidence 6889999885
No 79
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.31 E-value=81 Score=30.72 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhccccc
Q 006092 327 ERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVID 386 (661)
Q Consensus 327 E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRD 386 (661)
++|+-+|..+...||.+ +-.-|+.++.|.+.=..+-+.|.+.+++|..||+
T Consensus 53 q~I~~~f~~~t~~LRqq---------L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQ---------LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34555555555555542 3344455555555555555555566666666655
No 80
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=33.35 E-value=5.8e+02 Score=26.64 Aligned_cols=124 Identities=10% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 006092 496 CENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEE-RKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELS 574 (661)
Q Consensus 496 c~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~ 574 (661)
|.+=...|...-..-...+=.+|+.-++.+...+..+ ++++|| |+.+...|+...+|+...
T Consensus 93 ~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKk-------Le~rRLd~D~~K~r~~k~----------- 154 (223)
T cd07613 93 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKK-------LEGRRLDFDYKKKRQGKI----------- 154 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHhCCCC-----------
Confidence 4444444555555566667778888888876666543 334444 444444455444443210
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006092 575 PKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIK 645 (661)
Q Consensus 575 ~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~ 645 (661)
-+.+++..+.+.++-.+-....+...-+.-...++ .|-.+.+|-.+|=..|.+.+++|...-+
T Consensus 155 -------~eeElr~A~~kFees~E~a~~~M~n~l~~e~e~~~-~L~~fveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 155 -------PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVS-QLSALVQAQLEYHKQATQILQQVTVKLE 217 (223)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 03355555555555555444444433333223333 6888899999999999999999987655
No 81
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.75 E-value=3.7e+02 Score=25.92 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=7.3
Q ss_pred ccCChHHHHH
Q 006092 504 DKLPEKVASE 513 (661)
Q Consensus 504 d~lp~~~v~~ 513 (661)
|+|+|++++.
T Consensus 22 d~lsDd~Lvs 31 (135)
T KOG4196|consen 22 DRLSDDELVS 31 (135)
T ss_pred CCcCHHHHHH
Confidence 8888877653
No 82
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.52 E-value=6.4e+02 Score=26.86 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHH
Q 006092 586 VEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASA 634 (661)
Q Consensus 586 le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~ 634 (661)
...+..++...++-|.-.+..+++---.--...||.||..|..=-...+
T Consensus 186 ~~~~~~k~~~akNeYll~L~~aN~~q~kYY~~dLP~lld~ld~~~~~~l 234 (264)
T cd07654 186 KAECSSKATAARNDYLLNLAATNAHQDRYYQTDLPAIIKALDGELYDHL 234 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccHHHHH
Confidence 3334556678888898888888887778888999999998754333333
No 83
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=31.33 E-value=2.4e+02 Score=30.19 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhhCCHHH-HHHHHHHHHHHHHHHHHHHH
Q 006092 579 LILKAAKVEALKKRVESEKAKYLNAARITQA--MTLNNLKTSLPNV-FQALMGFSNASAKAFEALHS 642 (661)
Q Consensus 579 ~~~kr~~le~lrkrle~e~~~~~~~~~~tr~--~tl~~Lq~gLp~v-F~al~~Fs~~~~~aye~l~~ 642 (661)
-++=|++|-.+|+-++.|.++|.++|..--. +.|---|+.+.+| |+.++.|-..-.+-|+.+..
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq~ 168 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSRTRPIMPKEIERMVQIISKKFSHIQM 168 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999985443 3333336665444 56666555555555554443
No 84
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.79 E-value=5.2e+02 Score=25.25 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 006092 517 SFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQ 558 (661)
Q Consensus 517 ~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~ 558 (661)
.|+..|+.++..+.. .....+.+.+.+.++...+..+..
T Consensus 100 ~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~~~kl~~ 138 (218)
T cd07596 100 RYCQAVKETLDDRAD---ALLTLQSLKKDLASKKAQLEKLKA 138 (218)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566667776666542 223356777888888888887664
No 85
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=30.01 E-value=97 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 006092 354 EKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECL 411 (661)
Q Consensus 354 dkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH 411 (661)
-.||..+|.+.-++-..++.++....-+...-...-||+ .-|..+||.|+.+|
T Consensus 6 ~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~-----~~l~~~wk~ll~~q 58 (79)
T smart00872 6 YTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPS-----EQLEELWKALLLNQ 58 (79)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHhc
Confidence 347788888888888777887777665543322233554 35788999988764
No 86
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=29.17 E-value=23 Score=28.09 Aligned_cols=12 Identities=58% Similarity=0.783 Sum_probs=9.3
Q ss_pred CCCccccCCchH
Q 006092 1 MGCVTSRIDKDE 12 (661)
Q Consensus 1 MGC~~SKid~ee 12 (661)
|||+.||.|.-|
T Consensus 1 mgcggsradaie 12 (53)
T PF06989_consen 1 MGCGGSRADAIE 12 (53)
T ss_pred CCCCcccccccc
Confidence 999999886433
No 87
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=29.17 E-value=56 Score=33.61 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHhhccCChHHH---HHHHHHHHHHHHHHHH
Q 006092 489 SSTIRRLCENWQLVFDKLPEKVA---SEAINSFLSAIHAIFL 527 (661)
Q Consensus 489 ~ppIf~lc~~W~~~ld~lp~~~v---~~aIk~f~~~v~~i~~ 527 (661)
.|.|+.+|+.|.+-|++..--.+ .-+-+.|+.+|.+++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T KOG4503|consen 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999322111 1233555555555544
No 88
>COG5085 Predicted membrane protein [Function unknown]
Probab=29.17 E-value=56 Score=33.61 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHhhccCChHHH---HHHHHHHHHHHHHHHH
Q 006092 489 SSTIRRLCENWQLVFDKLPEKVA---SEAINSFLSAIHAIFL 527 (661)
Q Consensus 489 ~ppIf~lc~~W~~~ld~lp~~~v---~~aIk~f~~~v~~i~~ 527 (661)
.|.|+.+|+.|.+-|++..--.+ .-+-+.|+.+|.+++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T COG5085 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999322111 1233555555555544
No 89
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.79 E-value=7.2e+02 Score=26.45 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhc-CCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHH
Q 006092 321 KEVKEEERTKVEHEKKSMILQKQDEE-NHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISG 399 (661)
Q Consensus 321 ~EVKa~E~~r~~yekK~~~Lr~~d~r-g~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~G 399 (661)
+++...=..-..-.++.+..++.-.+ |-......+.|..++.|...+. .|+.|-.+-.+|+.|=.+.=||.=++||..
T Consensus 74 ~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~-~i~~v~~~~~~l~~ll~~~dy~~Al~li~~ 152 (291)
T PF10475_consen 74 DELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLE-QIKTVQQTQSRLQELLEEGDYPGALDLIEE 152 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333333333444455555544333 5556666666667766665543 567777777888888888888888888887
Q ss_pred HHHHHH
Q 006092 400 LMRMWR 405 (661)
Q Consensus 400 L~~MWk 405 (661)
.-.++.
T Consensus 153 ~~~~l~ 158 (291)
T PF10475_consen 153 CQQLLE 158 (291)
T ss_pred HHHHHH
Confidence 776664
No 90
>PHA03211 serine/threonine kinase US3; Provisional
Probab=28.64 E-value=79 Score=35.97 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 006092 394 ATLISGL 400 (661)
Q Consensus 394 ~eLi~GL 400 (661)
.+|+.||
T Consensus 267 ~qi~~aL 273 (461)
T PHA03211 267 RQLLSAI 273 (461)
T ss_pred HHHHHHH
Confidence 3334443
No 91
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=6.3e+02 Score=26.61 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHH
Q 006092 514 AINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRV 593 (661)
Q Consensus 514 aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrl 593 (661)
.+.+.+.-.+.|-..|.|+.+.+.-+..+.-++.+...-+++-+..... -...+..++.++|.+++++
T Consensus 42 ~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~------------ieqeik~~q~elEvl~~n~ 109 (246)
T KOG4657|consen 42 SMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMG------------IEQEIKATQSELEVLRRNL 109 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 3444444445777778888888777777777776666543333222211 0134556677788777654
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 006092 594 ---ESEKAKYLNAARITQA 609 (661)
Q Consensus 594 ---e~e~~~~~~~~~~tr~ 609 (661)
++|+..|...+++-|.
T Consensus 110 Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 110 QLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 4666666666666654
No 92
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.87 E-value=6.9e+02 Score=25.77 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhcc---CCh--HHHHHHHHHHHHHHHHHHHh
Q 006092 454 SFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDK---LPE--KVASEAINSFLSAIHAIFLQ 528 (661)
Q Consensus 454 sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~---lp~--~~v~~aIk~f~~~v~~i~~~ 528 (661)
-|..=...-++|.+.|..|-+.... .+..-.|...|...+.. +.. ..+...|...+..|..+...
T Consensus 27 f~keRa~iE~eYak~L~kLak~~~~----------~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~ 96 (239)
T cd07647 27 FLKQRAKAEEDYGKALLKLSKSAGP----------GDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREK 96 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC----------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566789999999999886321 12223556667654432 222 23444555555555444433
Q ss_pred hHHHHHH---------------hhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHH
Q 006092 529 QIEERKL---------------HKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRV 593 (661)
Q Consensus 529 Q~eE~~~---------------k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrl 593 (661)
+.++.+. -+.++.+.+.|+.+.+.++...++|..... .++. .++|.++.++
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~------------~~~~--ke~eK~~~K~ 162 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSS------------GAQP--KEAEKLKKKA 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CCCH--HHHHHHHHHH
Confidence 3332110 023344455666666666666655543210 0111 2455555554
Q ss_pred -------HHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHH
Q 006092 594 -------ESEKAKYLNAARITQAMTLNNLKTSLPNVFQA 625 (661)
Q Consensus 594 -------e~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~a 625 (661)
+..+..|...|...+..... ...-++.+|+.
T Consensus 163 ~k~~~~~~~a~~~Y~~~v~~l~~~~~~-~~~~~~~~~~~ 200 (239)
T cd07647 163 AQCKTSAEEADSAYKSSIGCLEDARVE-WESEHATACQV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44678898888776655532 44444444433
No 93
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=27.59 E-value=41 Score=44.29 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=5.2
Q ss_pred cchhhhhhhcC
Q 006092 238 GKEIAVLVDIN 248 (661)
Q Consensus 238 g~eVs~mLEa~ 248 (661)
++-++-=||++
T Consensus 1645 s~G~taSLEaG 1655 (1806)
T PRK14849 1645 SRGVTASVEGG 1655 (1806)
T ss_pred cEEEEEEEEcc
Confidence 33344445554
No 94
>PRK15313 autotransport protein MisL; Provisional
Probab=27.48 E-value=57 Score=40.40 Aligned_cols=6 Identities=17% Similarity=0.208 Sum_probs=2.3
Q ss_pred hhhhcC
Q 006092 243 VLVDIN 248 (661)
Q Consensus 243 ~mLEa~ 248 (661)
-=||++
T Consensus 804 aSLEaG 809 (955)
T PRK15313 804 ASVEAG 809 (955)
T ss_pred EEEEcc
Confidence 334433
No 95
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=27.35 E-value=6.8e+02 Score=25.51 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSG 471 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~ 471 (661)
+-.+|-.--.+.+.+|...+.+.+.|+.||..
T Consensus 11 ~~e~lv~~~~kY~~al~~~~~a~~~f~dal~k 42 (219)
T PF08397_consen 11 AWENLVSLGKKYQKALRAMSQAAAAFFDALQK 42 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677778888888888888888755
No 96
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=27.23 E-value=90 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=42.1
Q ss_pred hHHHHHHHHhhhhhHHHHHhhHHHH--HhhhcccccchhhhHHHHHHHHHHHHHHHHH
Q 006092 353 IEKIRLSVDSLEVDIRRLQHSISET--CSSILNVIDEELYPQLATLISGLMRMWRKMY 408 (661)
Q Consensus 353 idkTra~Vk~L~tri~Vaiq~vdsi--s~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ 408 (661)
.+..-..++.|.. +.++.+.+.+| -..+++||.-. -|++-.|...|.+=||.+.
T Consensus 18 ~~~~l~~L~~L~~-~~~t~~~L~~T~iG~~v~~Lrkh~-~~~I~~~A~~Li~~WK~~v 73 (75)
T smart00509 18 VSRCLDILKKLKK-LPITVDLLEETRIGKKVNGLRKHK-NEEIRKLAKKLIKSWKKLV 73 (75)
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHCcHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHh
Confidence 4556666777775 66777666654 48899999875 6999999999999999875
No 97
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=27.03 E-value=7.5 Score=30.81 Aligned_cols=7 Identities=57% Similarity=1.065 Sum_probs=4.2
Q ss_pred CCCcccc
Q 006092 1 MGCVTSR 7 (661)
Q Consensus 1 MGC~~SK 7 (661)
|||+.|-
T Consensus 1 mgcapsi 7 (52)
T PF08629_consen 1 MGCAPSI 7 (52)
T ss_pred CCcCCcE
Confidence 6666663
No 98
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=26.47 E-value=7.7e+02 Score=25.88 Aligned_cols=33 Identities=6% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006092 442 AQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIK 474 (661)
Q Consensus 442 ~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~ 474 (661)
.--...+..+.=+..++|..=|+|.+||++=-.
T Consensus 9 ~~ykni~eqfnP~lrnLv~lGk~Y~KA~~a~~~ 41 (226)
T cd07645 9 STYKNVMEQFNPGLRNLINLGKNYEKAVNAMVL 41 (226)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 344566777888888888888888888887655
No 99
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=26.19 E-value=7.5e+02 Score=25.64 Aligned_cols=159 Identities=14% Similarity=0.255 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHH-HHHHHhhccCChHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLC-ENWQLVFDKLPEKVASEAINSF 518 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc-~~W~~~ld~lp~~~v~~aIk~f 518 (661)
.|..|-.++..+..+.....++|+.+-++|. .++.|.....+. .--|..-+ ..|.+--+.+-+. |++-|..|
T Consensus 27 ~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~-----e~Y~p~~~g~~~-~~~~~~~~d~~~~dl~~~lv~~-vl~P~~~~ 99 (211)
T cd07611 27 EGTRLQRELRAYLAAIKGMQEASKKLTESLH-----EVYEPDWYGRDD-VKTIGEKCDLLWEDFHQKLVDG-ALLTLDTY 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCcccccch-HHHHHhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5677778888888888888888888888887 344444221111 00011111 1233332333222 78888888
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 006092 519 LSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKA 598 (661)
Q Consensus 519 ~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~ 598 (661)
.+.+..|=. ..+|| +.--=||++....++.+..|= .+++ .+|-..++-++.++.
T Consensus 100 ~s~f~~I~~------~I~KR-~hKllDYD~~r~~~~kL~~k~--------------~kDe-----~KL~kAe~el~~Ak~ 153 (211)
T cd07611 100 LGQFPDIKN------RIAKR-SRKLVDYDSARHHLEALQTSK--------------RKDE-----GRIAKAEEEFQKAQK 153 (211)
T ss_pred HHHHHHHHH------HHHHH-HHHHhhHHHHHHHHHHHhccc--------------cccH-----HHHHHHHHHHHHHHH
Confidence 888777722 11111 111126666666666655331 0111 256666777777777
Q ss_pred HHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHH
Q 006092 599 KYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA 639 (661)
Q Consensus 599 ~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~ 639 (661)
.|..... -|+.-||.+|..=..|---|++++-.
T Consensus 154 ~ye~lN~--------~Lk~ELP~L~~~Ri~f~~psFeal~~ 186 (211)
T cd07611 154 VFEEFNV--------DLQEELPSLWSRRVGFYVNTFKNVSS 186 (211)
T ss_pred HHHHHHH--------HHHHHHHHHHHhhhHHhhhhHHHHHH
Confidence 7754432 34555555555544444444444433
No 100
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=25.49 E-value=40 Score=29.88 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.2
Q ss_pred cchhhhHHHHHHHH
Q 006092 386 DEELYPQLATLISG 399 (661)
Q Consensus 386 DeEL~PQL~eLi~G 399 (661)
-|||||||.|+..-
T Consensus 18 pe~~wpql~e~~s~ 31 (106)
T PF09241_consen 18 PEDFWPQLFEATSI 31 (106)
T ss_dssp -GGGHHHHHHHHHH
T ss_pred cHHHhHHHHHHHHH
Confidence 48999999998754
No 101
>PHA03247 large tegument protein UL36; Provisional
Probab=25.43 E-value=1.1e+02 Score=42.09 Aligned_cols=45 Identities=33% Similarity=0.707 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 006092 66 TPPRGPALPPSPPPPLPPSPPPPPPFSPDLRKVDDDKRDELVHEENIDINEIGSSTSPPQIGTSV 130 (661)
Q Consensus 66 ~~~~~~~P~psp~pspPPpPPP~Pp~sp~~~~~~~~~~~~~~~~~~~~~~~~~~pPPPpPp~~ss 130 (661)
++....+|.|+++++++|+|.|+++.++... ++++|+|.|+..+.
T Consensus 2910 ~Pp~p~Pp~P~p~~p~~psp~PP~ppPprP~--------------------pp~~P~~~p~~~~~ 2954 (3151)
T PHA03247 2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ--------------------PPLAPTTDPAGAGE 2954 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCCCCCC
No 102
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=24.92 E-value=7.4e+02 Score=25.17 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=61.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006092 537 KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLK 616 (661)
Q Consensus 537 ~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq 616 (661)
........+|+++.+.+....+.+...- .|.++ ....+.+|++|..+=++-...+..+|...+..-+....
T Consensus 88 ~~~~~i~~~f~~~~~~~~~~k~~h~~~L-----rP~Lg----hP~~~~eL~~L~~~E~~R~~~~~~~I~~~~~~l~~~~~ 158 (208)
T PF14644_consen 88 EAMKAIQEEFEQQQKQWEQQKDQHEQQL-----RPNLG----HPDNRQELESLCEREEKRQKEHQEAIQNFWEKLLEEVR 158 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777665553221 12221 11235577777776556666677777777777777766
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006092 617 TSLPNVFQALMGFSNASAKAFEALHSHI 644 (661)
Q Consensus 617 ~gLp~vF~al~~Fs~~~~~aye~l~~~~ 644 (661)
..-..-+.+|..|+...+.-|.++.+.-
T Consensus 159 ~~a~~f~~~l~~~~~~ll~~lD~~vt~d 186 (208)
T PF14644_consen 159 KEAQMFVARLAQFTEKLLLLLDEVVTPD 186 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 6666666777777777777776665543
No 103
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=24.67 E-value=8e+02 Score=25.44 Aligned_cols=167 Identities=12% Similarity=0.142 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHH----HHHHHHHhhccCChHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRR----LCENWQLVFDKLPEKVASEAI 515 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~----lc~~W~~~ld~lp~~~v~~aI 515 (661)
.|..|-.++...-.+....-++|+..-++|.+ ++.|...+.+- .--|.. +|++....+. +.|++-|
T Consensus 27 ~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e-----~Y~~~~~~~~~-~~~v~e~~d~~~~~~~~~~~----~~vL~pi 96 (211)
T cd07612 27 DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD-----IYEPDWDGHED-LGAIVEGEDLLWNDYEAKLH----DQALRTM 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCcCcccH-HHHHHhccHHHHHHHHHHHH----HHHHHHH
Confidence 56777778888888888888889998888887 33343322111 001111 3444443333 3488999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHH
Q 006092 516 NSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVES 595 (661)
Q Consensus 516 k~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~ 595 (661)
..|.+.+-.|=.. .+||- .--=|+++....++.+..+= .++ ..++-..++.++.
T Consensus 97 ~~~~s~f~~i~~~------i~KR~-~KllDYD~~R~~~~kl~~k~--------------~kD-----~~KL~kAe~el~~ 150 (211)
T cd07612 97 ESYMAQFPDVKER------VAKRG-RKLVDYDSARHHLEALQNAK--------------KKD-----DAKIAKAEEEFNR 150 (211)
T ss_pred HHHHHHHHHHHHH------HHHHH-HHHhhHHHHHHHHHHHHhcc--------------ccc-----HHHHHHHHHHHHH
Confidence 9999887776211 11111 11125555555555544320 011 2356667777777
Q ss_pred HHHHHHHHHHHHHH-------hhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006092 596 EKAKYLNAARITQA-------MTLNNLKTSLPNVFQALMGFSNASAKAFEALHS 642 (661)
Q Consensus 596 e~~~~~~~~~~tr~-------~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~ 642 (661)
.+..|.....+-.. .-+..+..+|-.||.+=..|..+..+.|..|..
T Consensus 151 Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~ 204 (211)
T cd07612 151 AQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777554432221 111222233333333334566666666665544
No 104
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=24.52 E-value=1.4e+02 Score=30.43 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=39.6
Q ss_pred hhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCCchhHHHHHHHHHHHHHH
Q 006092 372 HSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSM-DFTTDYHHQATAQLEAEVTS 450 (661)
Q Consensus 372 q~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~-~~~s~~h~~at~qLe~el~~ 450 (661)
..||++--.+.-. ++|+|-|.+|+.+|.+|=..--+.--. .++++=+..|+..... +.+.+.-||....||..-..
T Consensus 106 T~mDaLKLn~~a~--DqLhPlL~dL~~slnr~~~~~~dfe~r-~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDle~aY~~ 182 (188)
T PF03997_consen 106 TLMDALKLNYRAK--DQLHPLLSDLMQSLNRVTDLPPDFEGR-SKLVEWLIKLNGMKASDELSEEQARQLLFDLESAYNA 182 (188)
T ss_dssp HHHHHHHTT--BH--HHHHHHHHHHHHHHHHCTTS-TT-CCH-HHHHHHHHHHHTS-TT-B--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhccchhH--hhHhhHHHHHHHHHhccCCCCCCCccH-HHHHHHHHHHhCCCcccccCHHHHHHHHHHHHHHHHH
Confidence 4556555544333 599999999999999995422222111 1233333334444433 34444455555555555444
Q ss_pred HHH
Q 006092 451 WYN 453 (661)
Q Consensus 451 W~~ 453 (661)
++.
T Consensus 183 F~~ 185 (188)
T PF03997_consen 183 FYR 185 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 105
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.38 E-value=3.7e+02 Score=28.22 Aligned_cols=87 Identities=13% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHH
Q 006092 509 KVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEA 588 (661)
Q Consensus 509 ~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~ 588 (661)
+-|.++|..|=..-..+.. ..-..||.|.| -||.|.++-|+++...+-.-.+ .+.+-+| ..|..
T Consensus 15 Kkv~EG~~~F~~i~~K~~~--~~n~~QKEK~E---~DLKkEIKKLQR~RdQIK~W~~----------~~diKdk-~~L~e 78 (233)
T PF04065_consen 15 KKVQEGVEEFDEIYEKVES--ATNQNQKEKLE---ADLKKEIKKLQRLRDQIKTWLS----------SNDIKDK-KKLLE 78 (233)
T ss_pred HHHHHHHHHHHHHHHHHHc--ccCcchHHHHH---HHHHHHHHHHHHHHHHHHHHcc----------CcccccH-HHHHH
Confidence 4577888888666555433 23455665554 5788888888887766532211 1123334 46888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006092 589 LKKRVESEKAKYLNAARITQAMT 611 (661)
Q Consensus 589 lrkrle~e~~~~~~~~~~tr~~t 611 (661)
.|+.+|..+++|...=+.+...+
T Consensus 79 ~Rk~IE~~MErFK~vEkesKtKa 101 (233)
T PF04065_consen 79 NRKLIEEQMERFKVVEKESKTKA 101 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999977666554433
No 106
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.09 E-value=7.5e+02 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 006092 325 EEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVD 361 (661)
Q Consensus 325 a~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk 361 (661)
+-++-|..|++.|+...+.-.-|.....++|.+.-++
T Consensus 124 ~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ 160 (261)
T cd07674 124 HLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTK 160 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3456789999999988776544544455555553333
No 107
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=23.83 E-value=3.1e+02 Score=30.12 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=57.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHH
Q 006092 303 GAHCITLAKLYATEQKLYKEVK----EEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETC 378 (661)
Q Consensus 303 gshssTLdkLyaWEKKLY~EVK----a~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis 378 (661)
.-|++|.-++++-+-+|-+=-| |--+-|.-|++|...-+.+++-- ..|+-..+.|..----|..+++.++-||
T Consensus 148 ~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk---~tv~~Leaev~~~K~~Y~~slrnLE~IS 224 (426)
T KOG2008|consen 148 LVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK---KTVDDLEAEVTLAKGEYKMSLRNLEMIS 224 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4699999999988766655333 33455778888887766655432 2355555556655566788999999999
Q ss_pred hhhcccccc
Q 006092 379 SSILNVIDE 387 (661)
Q Consensus 379 ~~I~kLRDe 387 (661)
.+|+.=|-.
T Consensus 225 d~IHeeRss 233 (426)
T KOG2008|consen 225 DEIHEERSS 233 (426)
T ss_pred HHHHHhhhh
Confidence 999876643
No 108
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=23.21 E-value=79 Score=31.96 Aligned_cols=6 Identities=50% Similarity=0.362 Sum_probs=3.2
Q ss_pred HHHHHH
Q 006092 21 KRAMKQ 26 (661)
Q Consensus 21 kr~~k~ 26 (661)
|++||.
T Consensus 102 k~lMk~ 107 (225)
T KOG3397|consen 102 KFLMKS 107 (225)
T ss_pred HHHHHH
Confidence 455555
No 109
>KOG3284 consensus Vacuolar sorting protein VPS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=2.9e+02 Score=28.33 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=48.1
Q ss_pred HhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCCCCCc-hhHHHHHHHHHHH
Q 006092 371 QHSISETCSSILNVIDEELYPQLATLISGLMRMWR--KMYECLQVQNHISQRLNHVTDNQSMDFTT-DYHHQATAQLEAE 447 (661)
Q Consensus 371 iq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk--~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s-~~h~~at~qLe~e 447 (661)
|..||++--.|+-. ++|||-|-||+..|-||=+ -=.+|-.+=.+-+..+ +.+..+..-+ ..-||....||..
T Consensus 131 IT~mDaLrLn~~A~--Dql~PlL~dL~~smnrls~~p~dfe~r~Kv~~Wl~rl---s~M~asDeL~e~q~RqllfDLEsA 205 (213)
T KOG3284|consen 131 ITVMDALRLNINAV--DQLYPLLSDLSASMNRLSRLPPDFEGRTKVKQWLIRL---SKMSASDELTEQQVRQLLFDLESA 205 (213)
T ss_pred HHHHHHHHHhhHHH--HhhcchHHHHHHHHHhhccCCccchhHHHHHHHHHHH---hcccccccccHHHHHHHHHHHHHH
Confidence 56677777777666 8999999999999998876 4445555444444444 3444344444 4456666666665
Q ss_pred HHH
Q 006092 448 VTS 450 (661)
Q Consensus 448 l~~ 450 (661)
-..
T Consensus 206 Y~~ 208 (213)
T KOG3284|consen 206 YNS 208 (213)
T ss_pred HHH
Confidence 443
No 110
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=22.77 E-value=6.8e+02 Score=26.05 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHhhhh-----hcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHH
Q 006092 323 VKEEERTKVEHEKKSMILQKQD-----EENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLI 397 (661)
Q Consensus 323 VKa~E~~r~~yekK~~~Lr~~d-----~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi 397 (661)
||.-|..|++|+--|..|+.++ .......++.++..-+..-.+|+.=.-.-|..=..-+..=|-.-+.-||.-|.
T Consensus 136 ik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~ 215 (229)
T PF06456_consen 136 IKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQ 215 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 006092 398 SGLMRMWRKMYE 409 (661)
Q Consensus 398 ~GL~~MWk~M~e 409 (661)
.+|+.-|....+
T Consensus 216 ~al~~y~~~~~~ 227 (229)
T PF06456_consen 216 NALAAYFSGNAQ 227 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHh
No 111
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.30 E-value=5.1e+02 Score=26.55 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKY 600 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~ 600 (661)
+..+.+|+|++.|++..
T Consensus 73 AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 73 AEFENYRKRTEKEKSEM 89 (196)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777888887776655
No 112
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.06 E-value=1.5e+03 Score=27.70 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhh-hhhHHHHHHHHHH-HHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHH
Q 006092 516 NSFLSAIHAIFLQQIEERKLHK-KIDRLEKRLQKEF-NSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRV 593 (661)
Q Consensus 516 k~f~~~v~~i~~~Q~eE~~~k~-k~e~~~kelekk~-~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrl 593 (661)
..=+.++..|+.-|++|+-.|. ..+.+.+++.+|. ..|..|..|.-..- +-=...++...+.+..-+.++..|.+.+
T Consensus 269 qVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLm-VQLkaQeleh~~~~~qL~~qVAsLQeev 347 (739)
T PF07111_consen 269 QVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALM-VQLKAQELEHRDSVKQLRGQVASLQEEV 347 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3345667889999999999886 4788999999997 55888988752100 0000112334455555556676776666
Q ss_pred HHHHHHHHH---HHH------HHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006092 594 ESEKAKYLN---AAR------ITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV 646 (661)
Q Consensus 594 e~e~~~~~~---~~~------~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~ 646 (661)
..+.....- +++ .+..+....||.-|-..+++...--.-+..+-+.|..-++.
T Consensus 348 ~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ea 409 (739)
T PF07111_consen 348 ASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEA 409 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332211 121 11123335688888888888777666666655555554443
No 113
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=21.96 E-value=6.1e+02 Score=25.79 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhcCC-chhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcc
Q 006092 326 EERTKVEHEKKSMILQKQDEENH-DWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILN 383 (661)
Q Consensus 326 ~E~~r~~yekK~~~Lr~~d~rg~-~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~k 383 (661)
-+.+...++||-..+-++...|. ...+++.....|+.++.+...+-+..+.||..|.+
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~ 175 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888888877765442 46799999999999999999999999999988753
No 114
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=21.55 E-value=9.4e+02 Score=25.10 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFL 519 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~ 519 (661)
-|.||-..++.-+-+-.++-.+|+.+-+.|+.+=+.+-- ++. .|+.+.++|+.|+
T Consensus 17 ~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~----------------~~~---------dDe~i~~~L~kFs 71 (215)
T cd07631 17 YFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP----------------LGG---------DDEVMSSTLQQFS 71 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------cCC---------CcHHHHHHHHHHH
Confidence 478899999999999999999999999999988764321 011 7888899999999
Q ss_pred HHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006092 520 SAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFEG 562 (661)
Q Consensus 520 ~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~~ 562 (661)
..|..|...+..=..|- +++..+.|.|+|-...++..-.|+..
T Consensus 72 ~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~ 130 (215)
T cd07631 72 KVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSR 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 99987766655311110 24456667788877778777777754
No 115
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.07 E-value=3.4e+02 Score=24.88 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhccc
Q 006092 318 KLYKEVKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNV 384 (661)
Q Consensus 318 KLY~EVKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kL 384 (661)
-|--|.|. |.-+++-++--+-=-.-+.|..-...+|+.+..+..----|.--.|+||+.|+.+-+|
T Consensus 43 ~~r~~MKE-ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~Lm~rQN~mm~~qqqsidslsksvgkl 108 (121)
T PF10669_consen 43 QVRIRMKE-ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSLSKSVGKL 108 (121)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 34455555 4444443332222223344445556677777776666666667789999999998876
No 116
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.65 E-value=1.7e+02 Score=24.99 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=39.4
Q ss_pred HhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHHHH------HHHHHHHH
Q 006092 361 DSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGLM------RMWRKMYE 409 (661)
Q Consensus 361 k~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL~------~MWk~M~e 409 (661)
+.|.=.|....|-||+==++.+++--..+.|.+-+--..-. .+|+.|+|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45777889999999999999999999999999876554443 77777776
No 117
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.60 E-value=1.1e+03 Score=25.63 Aligned_cols=135 Identities=10% Similarity=0.201 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHhhhhhHHHHHHHHHHHHHHH----HHHhhhccccCCCCCCCCCCCC
Q 006092 509 KVASEAINSFLSAIHAIFLQQIE-------ERKLHKKIDRLEKRLQKEFNSMAE----MEQRFEGNFAVGVEHPELSPKH 577 (661)
Q Consensus 509 ~~v~~aIk~f~~~v~~i~~~Q~e-------E~~~k~k~e~~~kelekk~~~l~~----~e~k~~~~~~~~~~~~~~~~~~ 577 (661)
+++...|+.+...++.|-.+|.. +...+++.+.+..++.++.+.++. ++....... ..+ ....
T Consensus 43 e~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~----~~~--~~~~ 116 (297)
T KOG0810|consen 43 EEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE----TQN--RSSA 116 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccC--CCCc
Confidence 45667777777777777766643 555566777776666666655433 222221110 001 1123
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhhhh-hhhCCHHHH-HHHHHHHHHHHH
Q 006092 578 PLILKAAKVEALKKRVESEKAKYLNAARITQA--------------------MTLNN-LKTSLPNVF-QALMGFSNASAK 635 (661)
Q Consensus 578 ~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~--------------------~tl~~-Lq~gLp~vF-~al~~Fs~~~~~ 635 (661)
...-+|.....+.+++.+.+..|...=...++ -++.. +-+|-+.+| +.+-.=+....+
T Consensus 117 ~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~ 196 (297)
T KOG0810|consen 117 GLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQ 196 (297)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHH
Confidence 35567788999999999988877665332211 11222 233555554 444445666777
Q ss_pred HHHHHHHhHHHhhh
Q 006092 636 AFEALHSHIKVAAR 649 (661)
Q Consensus 636 aye~l~~~~~~~~~ 649 (661)
+|.++..+..++.+
T Consensus 197 ~l~Eiq~Rh~~ik~ 210 (297)
T KOG0810|consen 197 TLAEIQERHDEIKK 210 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777765443
No 118
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.54 E-value=1e+03 Score=25.23 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC-CCCChhhhhHHHHHHHHH
Q 006092 514 AINSFLSAIHAIFLQQIEE-RKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPEL-SPKHPLILKAAKVEALKK 591 (661)
Q Consensus 514 aIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~-~~~~~~~~kr~~le~lrk 591 (661)
.=++|+.-++.+.+....+ +++||++ +++...|+....|+..-+....+.... .+..+..+=|.++|.+..
T Consensus 104 i~~~fl~PL~~~le~dlk~I~k~RK~L-------e~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~ 176 (248)
T cd07619 104 IERDVVEPLYVLAEVEIPNIQKQRKHL-------AKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAAN 176 (248)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------HhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHH
Confidence 3456666666666654433 3344444 444444444444443211100000000 112233344566666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH--hhhcCCCCC
Q 006092 592 RVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV--AARHNAPEY 655 (661)
Q Consensus 592 rle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~--~~~~~~~~~ 655 (661)
+++..+..+...+-..=+.-+..-.- |..+.+|-.+|=..+++.++++....+. ....+.|.|
T Consensus 177 ~~e~~kd~~~~~m~~~l~~e~e~~~~-l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~~~k~~f 241 (248)
T cd07619 177 RMEICRDQLSADMYSFVAKEIDYANY-FQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPSY 241 (248)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 66655555444333222222222211 8899999999999999999999987665 445666666
No 119
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=20.35 E-value=1e+03 Score=25.16 Aligned_cols=130 Identities=9% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHH
Q 006092 517 SFLSAIHAIFLQQI-EERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVES 595 (661)
Q Consensus 517 ~f~~~v~~i~~~Q~-eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~ 595 (661)
+|+.-++.+.+... .=.++|++++..+=||+-+.+.+.....+ ++ ... .....-+..-+.+++.++.++|+
T Consensus 107 ~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~----~~-~~~---~~~~~K~~~l~ee~e~a~~k~E~ 178 (246)
T cd07618 107 DILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKS----SG-TNF---QAMPSKIDMLKEEMDEAGNKVEQ 178 (246)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhcccc----Cc-ccc---ccccchhhhhHHHHHHHHHHHHH
Confidence 88888888888775 34455555555444555444333321111 10 000 00011122224567888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH--hhhcCCCCC
Q 006092 596 EKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV--AARHNAPEY 655 (661)
Q Consensus 596 e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~--~~~~~~~~~ 655 (661)
.+..+...+-..=+.. ...=..|-.+.+|-.+|=..+++.++++....+. ....+.|.|
T Consensus 179 ~kD~~~~dm~~~l~~e-~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~~f 239 (246)
T cd07618 179 CKDQLAADMYNFASKE-GEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWMEKPAF 239 (246)
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 8888766433221111 2223457788999999999999999999886665 234555555
No 120
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=20.23 E-value=1e+03 Score=24.91 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------------hhhhHHHHHHHHHHHHHHHHHHhhh
Q 006092 507 PEKVASEAINSFLSAIHAIFLQQIEERKLH----------------KKIDRLEKRLQKEFNSMAEMEQRFE 561 (661)
Q Consensus 507 p~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k----------------~k~e~~~kelekk~~~l~~~e~k~~ 561 (661)
+|+++.++++.|+..|..|...+.+=..+- +++..+.|.|+|-...++..-.|+.
T Consensus 59 ~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Kna 129 (215)
T cd07632 59 GDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYS 129 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 788999999999999988876665422111 2344555677777777776666665
Done!