Query 006092
Match_columns 661
No_of_seqs 200 out of 280
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efl_A Formin-binding protein 95.2 3 0.0001 42.1 22.4 169 455-633 37-228 (305)
2 2efk_A CDC42-interacting prote 94.5 2.8 9.5E-05 42.4 19.8 173 442-627 20-215 (301)
3 2x3v_A Syndapin I, protein kin 92.7 5.6 0.00019 41.1 18.6 168 455-636 43-241 (337)
4 3haj_A Human pacsin2 F-BAR; pa 92.4 8.9 0.0003 42.1 20.6 171 455-639 45-246 (486)
5 2v0o_A FCHO2, FCH domain only 92.0 11 0.00036 37.5 23.1 46 584-630 163-208 (276)
6 2fic_A Bridging integrator 1; 91.0 13 0.00044 36.8 19.4 58 586-643 181-245 (251)
7 2q12_A DIP13 alpha, DCC-intera 90.9 14 0.00048 36.9 23.6 91 539-637 126-218 (265)
8 4dyl_A Tyrosine-protein kinase 89.4 23 0.00079 37.9 19.9 180 439-628 22-215 (406)
9 4h8s_A DCC-interacting protein 87.0 34 0.0012 36.2 22.3 25 539-563 149-173 (407)
10 3aco_A Pacsin2, protein kinase 85.6 36 0.0012 35.3 21.1 174 450-637 43-251 (350)
11 3abh_A Pacsin2, protein kinase 80.8 51 0.0017 33.4 18.7 176 450-639 43-253 (312)
12 3iot_A Maltose-binding protein 79.8 1.2 4E-05 47.7 4.0 25 25-49 348-372 (449)
13 1uru_A Amphiphysin; endocytosi 78.3 22 0.00075 34.6 12.5 111 307-421 119-236 (244)
14 4a3a_A Amphiphysin; structural 78.2 58 0.002 32.5 19.6 173 440-645 53-233 (243)
15 2v0o_A FCHO2, FCH domain only 78.0 47 0.0016 32.8 15.0 72 324-400 136-207 (276)
16 3i2w_A Syndapin, LD46328P; EFC 77.5 61 0.0021 32.4 16.6 177 455-640 31-232 (290)
17 1uru_A Amphiphysin; endocytosi 72.3 73 0.0025 30.8 22.9 40 608-647 197-236 (244)
18 1i4d_A Arfaptin 2, partner of 70.9 88 0.003 31.2 18.1 188 444-659 26-224 (224)
19 2q13_A DCC-interacting protein 66.1 1.3E+02 0.0045 31.4 25.1 25 539-563 126-150 (385)
20 2fic_A Bridging integrator 1; 64.1 82 0.0028 30.9 13.0 91 321-411 148-239 (251)
21 2z0v_A SH3-containing GRB2-lik 62.8 1.2E+02 0.0041 29.8 16.0 110 511-645 116-225 (240)
22 2j9w_A VPS28, VPS28-PROV prote 59.5 17 0.00059 32.1 6.1 80 371-458 18-99 (102)
23 2efl_A Formin-binding protein 59.0 1.1E+02 0.0038 30.4 13.1 47 319-365 132-186 (305)
24 2j9u_A VPS28, vacuolar protein 58.2 11 0.00039 32.9 4.6 79 371-457 15-93 (96)
25 4avm_A Bridging integrator 2; 50.6 1.9E+02 0.0066 28.4 15.8 32 440-471 48-79 (237)
26 3m3w_A Pacsin3, protein kinase 49.9 2.3E+02 0.0078 29.0 19.9 52 585-637 191-242 (320)
27 2efk_A CDC42-interacting prote 48.2 1.4E+02 0.0048 29.6 11.8 77 323-399 129-216 (301)
28 3caz_A BAR protein; thermo-aci 42.4 2.3E+02 0.0078 27.7 11.4 81 305-407 96-183 (294)
29 3aco_A Pacsin2, protein kinase 41.8 1.9E+02 0.0066 29.7 11.9 54 324-377 157-225 (350)
30 3i2w_A Syndapin, LD46328P; EFC 32.0 99 0.0034 30.9 7.6 73 323-400 134-221 (290)
31 3a98_B Engulfment and cell mot 31.4 23 0.0008 34.7 2.6 18 120-137 185-202 (203)
32 2xvc_A ESCRT-III, SSO0910; cel 31.4 26 0.0009 27.9 2.4 33 316-348 12-54 (59)
33 4dyl_A Tyrosine-protein kinase 31.1 2.2E+02 0.0074 30.3 10.4 68 324-398 134-214 (406)
34 3abh_A Pacsin2, protein kinase 28.4 2.8E+02 0.0097 27.7 10.4 72 324-400 157-243 (312)
35 2v66_B Nuclear distribution pr 27.2 2.7E+02 0.0093 24.8 8.5 65 496-561 19-87 (111)
36 1zww_A SH3-containing GRB2-lik 26.5 4.7E+02 0.016 25.7 16.7 128 494-646 112-242 (256)
37 2x3v_A Syndapin I, protein kin 26.1 5.2E+02 0.018 26.1 12.3 80 315-399 139-233 (337)
38 3rq9_A TSI2, type VI secretion 23.8 63 0.0021 26.9 3.4 35 367-401 8-45 (85)
39 3stq_A TSI2, putative uncharac 23.0 74 0.0025 27.2 3.8 34 367-400 33-69 (102)
40 2z73_A Rhodopsin; visual pigme 22.9 18 0.0006 37.9 0.0 10 16-25 252-261 (448)
41 3ok8_A Brain-specific angiogen 22.3 5.8E+02 0.02 25.3 19.1 33 442-474 16-48 (222)
42 4efa_E V-type proton ATPase su 20.7 3.1E+02 0.011 26.6 8.6 68 325-395 54-122 (233)
43 3haj_A Human pacsin2 F-BAR; pa 20.5 8.2E+02 0.028 26.3 23.1 25 443-467 137-161 (486)
No 1
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=95.21 E-value=3 Score=42.10 Aligned_cols=169 Identities=14% Similarity=0.184 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhh----H
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQ----I 530 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q----~ 530 (661)
|..=...-++|.+.|..|-+...-... .. ...|..+.+...|...+..+ +.+...-..|+..|..-+... .
T Consensus 37 ~~eRa~iE~eYak~L~kLa~~~~~~~~--~~-~~~~~~~t~~~aw~~~~~~~--e~~a~~h~~~a~~l~~~v~~~l~~~~ 111 (305)
T 2efl_A 37 VKERTEIELSYAKQLRNLSKKYQPKKN--SK-EEEEYKYTSCKAFISNLNEM--NDYAGQHEVISENMASQIIVDLARYV 111 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCC----------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc--cC-ccccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567789999999999997542110 00 01344678889998777654 333444444444442211110 0
Q ss_pred HHHH-Hhh------------------hhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHH
Q 006092 531 EERK-LHK------------------KIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKK 591 (661)
Q Consensus 531 eE~~-~k~------------------k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrk 591 (661)
++++ .++ .++.+.+.|+...+.++....++..... + ... ....+...+.+++..++
T Consensus 112 ~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~--~--~~~-s~~~~eK~~~k~~~~~~ 186 (305)
T 2efl_A 112 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA--D--INV-TKADVEKARQQAQIRHQ 186 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--TTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c--ccc-cHhHHHHHHHHHHHHHH
Confidence 1111 111 1223334444444555544444321100 0 000 01123333455666677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHH
Q 006092 592 RVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNAS 633 (661)
Q Consensus 592 rle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~ 633 (661)
+++..+..|..+|..++..--.....-+|.+|+.|..+=...
T Consensus 187 ~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r 228 (305)
T 2efl_A 187 MAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERR 228 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999988877655666777888877555443333
No 2
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=94.53 E-value=2.8 Score=42.42 Aligned_cols=173 Identities=9% Similarity=0.089 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 006092 442 AQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSA 521 (661)
Q Consensus 442 ~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~ 521 (661)
..+-.+|..| |..=...-++|.+.|..|-++..-.- ... ...-+.+.++..|...+..+ +.+...-..|+..
T Consensus 20 ~~~~~el~~f---~keRa~iE~eYak~L~kLakk~~~~~--~~~-~~~~~~~t~~~~w~~~l~~~--e~~a~~h~~~a~~ 91 (301)
T 2efk_A 20 LDLLDRYVKF---VKERTEVEQAYAKQLRSLVKKYLPKR--PAK-DDPESKFSQQQSFVQILQEV--NDFAGQRELVAEN 91 (301)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSCC----------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccc--ccc-ccccccchHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3444444433 33445667899999999998764210 000 00113458888998877653 2333333334433
Q ss_pred HHHHHHh-----hHHHHHHhh------------------hhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCh
Q 006092 522 IHAIFLQ-----QIEERKLHK------------------KIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHP 578 (661)
Q Consensus 522 v~~i~~~-----Q~eE~~~k~------------------k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~ 578 (661)
|..-+.. ..+-.+.+| .++...+.|+...+.++....++..... + +..+ ...
T Consensus 92 L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~--~--~~~s-~~~ 166 (301)
T 2efk_A 92 LSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQ--D--INAT-KAD 166 (301)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--TTSC-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--C--cccC-HHH
Confidence 3211100 111111111 1222333444444444444333321100 0 0010 112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHH
Q 006092 579 LILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALM 627 (661)
Q Consensus 579 ~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~ 627 (661)
+...+.+++....+++..+..|..+|..++..--.-...-+|.||+.|.
T Consensus 167 ~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ 215 (301)
T 2efk_A 167 VEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQ 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233466777777788889999999888877644455666777766543
No 3
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=92.73 E-value=5.6 Score=41.14 Aligned_cols=168 Identities=14% Similarity=0.177 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhH----
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQI---- 530 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~---- 530 (661)
|..=...-++|.+.|..|-++....... .|.+..|...|...+..+ +.+...-..|+..|..-+...-
T Consensus 43 ~keRa~iE~eYak~L~kLakk~~~~~~~------~~~~gtl~~aw~~~~~e~--e~~a~~H~~~a~~L~~~v~~~l~~~~ 114 (337)
T 2x3v_A 43 VQERAKIEKAYAQQLTDWAKRWRQLIEK------GPQYGSLERAWGAMMTEA--DKVSELHQEVKNSLLNEDLEKVKNWQ 114 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999999976532211 244567888898776543 2233333344444422111100
Q ss_pred HHH---------HHhh------------------hhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhH
Q 006092 531 EER---------KLHK------------------KIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKA 583 (661)
Q Consensus 531 eE~---------~~k~------------------k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr 583 (661)
.|. +.++ .++.+.+.|+...+..+..+.++.... .+ .... ...+..-+
T Consensus 115 ~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~--~~--~~~s-~k~~eK~~ 189 (337)
T 2x3v_A 115 KDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSK--TE--QSVT-PEQQKKLV 189 (337)
T ss_dssp HHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS--SCCC-HHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccc--cC--cccC-HHHHHHHH
Confidence 011 0111 122223333333333333332221111 01 0010 11233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKA 636 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~a 636 (661)
.+++.++.+++.....|..+|..+... -..+..-+|.+|+.|..+=...+..
T Consensus 190 ~k~~k~~~~~~~a~~~Y~~~v~~~n~~-~~~~~~~~~~~~~~~Q~le~~Rl~~ 241 (337)
T 2x3v_A 190 DKVDKCRQDVQKTQEKYEKVLEDVGKT-TPQYMEGMEQVFEQCQQFEEKRLVF 241 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888889999999999988877 5667778888888766544433333
No 4
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=92.38 E-value=8.9 Score=42.11 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhH----
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQI---- 530 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~---- 530 (661)
|..=...-+.|-+.|..|-+++...... .|....|+..|...+..+ +.+...-..|+..|..-+.+.-
T Consensus 45 ~keRa~iE~eYAk~L~kLakk~~~~~~~------~~e~gtl~~aw~~~~~e~--e~~a~~H~~~a~~L~~~v~~~l~~~~ 116 (486)
T 3haj_A 45 LHERARIEKAYAQQLTEWARRWRQLVEK------GPQYGTVEKAWMAFMSEA--ERVSELHLEVKASLMNDDFEKIKNWQ 116 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS------SSCCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555678899999999999975321111 233356788888777542 3344444455555422211100
Q ss_pred HHH---------HHh------------------hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhH
Q 006092 531 EER---------KLH------------------KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKA 583 (661)
Q Consensus 531 eE~---------~~k------------------~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr 583 (661)
+|+ +.+ +.++.+.+.|++..+..+....++..... + ... ....+...+
T Consensus 117 ~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~--d--~~~-t~k~~eK~~ 191 (486)
T 3haj_A 117 KEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA--D--PSL-NPEQLKKLQ 191 (486)
T ss_dssp HHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C--CCS-CSHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c--ccC-CHHHHHHHH
Confidence 010 111 12233333444444433333332221100 0 001 112233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA 639 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~ 639 (661)
.+++.++.+++..+..|..+|..++... .-...-+|.+|+.|..+-...+..+.+
T Consensus 192 ~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-~~y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 192 DKIEKCKQDVLKTKEKYEKSLKELDQGT-PQYMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888999999999988775 557788899888777766666665543
No 5
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=91.95 E-value=11 Score=37.52 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHH
Q 006092 584 AKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFS 630 (661)
Q Consensus 584 ~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs 630 (661)
..++.++.++......|..++..+....- .+..-+|.+|+.|..+=
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~-~~~~~~~~~~~~lQ~le 208 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYALAKA-DFEQKMTETAQKFQDIE 208 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 37888999999999999999998877654 34788888888765443
No 6
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=91.04 E-value=13 Score=36.75 Aligned_cols=58 Identities=5% Similarity=0.020 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 006092 586 VEALKKRVESEKAKYLNAAR-------ITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSH 643 (661)
Q Consensus 586 le~lrkrle~e~~~~~~~~~-------~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~ 643 (661)
+......++..++.|..... ...+.....+...|-.++.+-..|...|.+.|+.|...
T Consensus 181 l~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~ 245 (251)
T 2fic_A 181 IAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDV 245 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666653322 12223333344555555555566666666666666543
No 7
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=90.87 E-value=14 Score=36.89 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006092 539 IDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHP--LILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLK 616 (661)
Q Consensus 539 ~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~--~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq 616 (661)
+....|.|++....++..-.||...+. ....+ +.+-..+|...|+..+...-.|-..+..++..----+=
T Consensus 126 ~ke~kk~fdk~~~~yd~al~k~~~~~k--------~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~l 197 (265)
T 2q12_A 126 ILTLKEVFQIASNDHDAAINRYSRLSK--------KRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALL 197 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888764331 00111 12333556666666666555555555444432111122
Q ss_pred hCCHHHHHHHHHHHHHHHHHH
Q 006092 617 TSLPNVFQALMGFSNASAKAF 637 (661)
Q Consensus 617 ~gLp~vF~al~~Fs~~~~~ay 637 (661)
..|-..++|...|-..+.+.+
T Consensus 198 e~l~~~~~a~~~ff~~g~e~~ 218 (265)
T 2q12_A 198 EPLLGYMQAQISFFKMGSENL 218 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223334444444555554444
No 8
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=89.40 E-value=23 Score=37.91 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHH
Q 006092 439 QATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSF 518 (661)
Q Consensus 439 ~at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f 518 (661)
+.-.+|-.+|..| |..=...-++|-+.|..|-++...... .+..++..++..|..-+..+ +.+......|
T Consensus 22 ~~g~~lledl~~F---~reRA~IE~eYAk~L~kLakk~~~k~~-----~~~~~~~tl~~aW~~ll~et--e~~a~~H~~l 91 (406)
T 4dyl_A 22 EAELRLLEGMRKW---MAQRVKSDREYAGLLHHMSLQDSGGQS-----RAISPDSPISQSWAEITSQT--EGLSRLLRQH 91 (406)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC-----------------CCSHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccc-----cCCCCCChHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3344454455443 334467789999999999986432111 11122345668887776643 3333333333
Q ss_pred HHHHHHHH-----HhhHHHHHHhhhhh----HHHHHHHHHH-HHHHHHHHhhhccccCCC----CCCCCCCCChhhhhHH
Q 006092 519 LSAIHAIF-----LQQIEERKLHKKID----RLEKRLQKEF-NSMAEMEQRFEGNFAVGV----EHPELSPKHPLILKAA 584 (661)
Q Consensus 519 ~~~v~~i~-----~~Q~eE~~~k~k~e----~~~kelekk~-~~l~~~e~k~~~~~~~~~----~~~~~~~~~~~~~kr~ 584 (661)
+..+..-+ .-+.+-.+.+|+.+ .+.+++.+.. ..|+..-++|...-...+ ..........+..-+.
T Consensus 92 ae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~ 171 (406)
T 4dyl_A 92 AEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKD 171 (406)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Confidence 33332211 11111122223222 2233333333 333333222221100000 0000000112233346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHH
Q 006092 585 KVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMG 628 (661)
Q Consensus 585 ~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~ 628 (661)
+++....++...+..|..++..++...-.--...||.||+.+-.
T Consensus 172 k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~ 215 (406)
T 4dyl_A 172 KYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQD 215 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 77777888888889999999888876666677889999876544
No 9
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=86.96 E-value=34 Score=36.24 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcc
Q 006092 539 IDRLEKRLQKEFNSMAEMEQRFEGN 563 (661)
Q Consensus 539 ~e~~~kelekk~~~l~~~e~k~~~~ 563 (661)
+..+.|.|++....++.+-.||...
T Consensus 149 ~ke~kK~Fek~~~~Yd~~l~Ky~~~ 173 (407)
T 4h8s_A 149 VSTLKDLFGLASNEHDLSMAKYSRL 173 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888888654
No 10
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=85.64 E-value=36 Score=35.26 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=95.1
Q ss_pred HHHHhHHHHH----HHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 006092 450 SWYNSFCKLT----KFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAI 525 (661)
Q Consensus 450 ~W~~sF~~~i----~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i 525 (661)
.|+.-|..|+ ..-++|.+.|..|-++...... ..|.+..|+..|..-+..+ +.+...-..|+..|..-
T Consensus 43 ~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~------~~~e~gtl~~aw~~l~~e~--e~~a~~H~~la~~L~~~ 114 (350)
T 3aco_A 43 RLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVE------KGPQYGTVEKAWMAFMSEA--ERVSELHLEVKASLMND 114 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4455555554 5678999999999997643221 1344568888898665532 22333333344433322
Q ss_pred HHhhHH-------------------------------HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 006092 526 FLQQIE-------------------------------ERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELS 574 (661)
Q Consensus 526 ~~~Q~e-------------------------------E~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~ 574 (661)
+...-. -..+...++.+.+.|+...+..+..+.++....+ + ....
T Consensus 115 v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~--d--~~~~ 190 (350)
T 3aco_A 115 DFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA--D--PSLN 190 (350)
T ss_dssp HHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSS--S--SSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C--ccCC
Confidence 211000 0001122344445666666666666655532211 1 0000
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHH
Q 006092 575 PKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAF 637 (661)
Q Consensus 575 ~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~ay 637 (661)
...+..-+.+++.++..++.....|..+|..++... .-...-+|.+|+.|..+=..-+..+
T Consensus 191 -~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-~~~~~~~~~~~~~~Q~lee~Rl~~l 251 (350)
T 3aco_A 191 -PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT-PQYMENMEQVFEQCQQFEEKRLRFF 251 (350)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222245677778888888999999999888765 4466678888886665554444433
No 11
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=80.84 E-value=51 Score=33.39 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=92.7
Q ss_pred HHHHhHHHHH----HHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 006092 450 SWYNSFCKLT----KFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAI 525 (661)
Q Consensus 450 ~W~~sF~~~i----~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i 525 (661)
.|+.-|..|+ ..-+.|.+.|..|-++....... .|.+..+...|..-+..+ +.+...-..|+..|+..
T Consensus 43 ~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~------~~e~gtl~~aw~~i~~e~--e~~a~~H~~~a~~L~~~ 114 (312)
T 3abh_A 43 RLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEK------GPQYGTVEKAWMAFMSEA--ERVSELHLEVKASLMND 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4444455554 56789999999999975421110 234468888887665432 22222223333333321
Q ss_pred HHh-------------------------------hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 006092 526 FLQ-------------------------------QIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELS 574 (661)
Q Consensus 526 ~~~-------------------------------Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~ 574 (661)
+.. |..-..+...++.+.+.|+...+.++....++....+ + ....
T Consensus 115 v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~--d--~~~~ 190 (312)
T 3abh_A 115 DFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA--D--PSLN 190 (312)
T ss_dssp HHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--C--TTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--C--CcCC
Confidence 111 0001111122444555566666555555544422111 0 0000
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHH
Q 006092 575 PKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEA 639 (661)
Q Consensus 575 ~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~ 639 (661)
...+..-+.+++.++..++.....|..+|..++...- -...-+|.+|+.|..+=..-+..+.+
T Consensus 191 -~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~-~~~~~~~~~~~~~Q~lee~Rl~~lk~ 253 (312)
T 3abh_A 191 -PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP-QYMENMEQVFEQCQQFEEKRLRFFRE 253 (312)
T ss_dssp -SHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112112245666777888889999999998887653 35667888888776665544444433
No 12
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=79.81 E-value=1.2 Score=47.74 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhhhh
Q 006092 25 KQLVGVRGQFAEAQLAYLRALKNTG 49 (661)
Q Consensus 25 k~av~~R~~laaah~~y~~sLr~~g 49 (661)
..++..+.....|-......++.+|
T Consensus 348 ~~~~~G~~~~eeal~~~~~~~~~i~ 372 (449)
T 3iot_A 348 INAASGRQTVDAALAAAQTNAAAMA 372 (449)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3344444344444444444444444
No 13
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=78.26 E-value=22 Score=34.62 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhcC---CchhhhHHHHHHHHhhhhhHHHHHhhHHHHHh
Q 006092 307 ITLAKLYATEQKLYKE----VKEEERTKVEHEKKSMILQKQDEEN---HDWTKIEKIRLSVDSLEVDIRRLQHSISETCS 379 (661)
Q Consensus 307 sTLdkLyaWEKKLY~E----VKa~E~~r~~yekK~~~Lr~~d~rg---~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~ 379 (661)
..|..|. +.|.+ +|-.+.-++.||+.-..|.++..++ .+..+|.++...+......+.-.-.-+-.---
T Consensus 119 ~Pl~~~~----~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp 194 (244)
T 1uru_A 119 IPLNTYT----GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELP 194 (244)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555 34544 4567888999999988888887654 44445544444443333333322222333334
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006092 380 SILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRL 421 (661)
Q Consensus 380 ~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~ 421 (661)
.+..+|.+-+.|.|..+|.......+.|.+.|+.=..++..+
T Consensus 195 ~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l 236 (244)
T 1uru_A 195 ALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 236 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888999999999999999888888777655555544
No 14
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=78.15 E-value=58 Score=32.47 Aligned_cols=173 Identities=12% Similarity=0.147 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHH-HHHhhccCChHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCEN-WQLVFDKLPEKVASEAINSF 518 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~-W~~~ld~lp~~~v~~aIk~f 518 (661)
.+..|..++..|..+......+|..+.++|.+ ++.|...... ..+.+...|.. |.+--++|++ .++.-|..|
T Consensus 53 ~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~-----ly~p~~~~~~-~~~~~~~~~~~l~~d~~~~l~d-~~l~Pl~~l 125 (243)
T 4a3a_A 53 EGTRLQRELRGYLAAIKGMQEASMKLTESLHE-----VYEPDWYGRE-DVKMVGEKCDVLWEDFHQKLVD-GSLLTLDTY 125 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCTTSTTHH-HHHHHHHHHHHHHHHHHHHHHH-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCccccCcc-chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 56778888888888888888999888888876 3333211100 12344555543 7666666654 344556666
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 006092 519 LSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKA 598 (661)
Q Consensus 519 ~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~ 598 (661)
.+.+..|- ...++|- .--=||++-...++.+..|= .+++ .++......++..+.
T Consensus 126 ~~~f~~i~------k~I~KR~-~KllDYD~~~~k~~kL~~K~--------------~kd~-----~kl~kae~el~~Ak~ 179 (243)
T 4a3a_A 126 LGQFPDIK------NRIAKRS-RKLVDYDSARHHLEALQSSK--------------RKDE-----SRISKAEEEFQKAQK 179 (243)
T ss_dssp HHTHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHTCS--------------SCCH-----HHHHHHHHHHHHHHH
T ss_pred HHHChHHH------HHHHHhc-chHHHHHHHHHHHHHHHhcc--------------cccH-----HHHHHHHHHHHHHHH
Confidence 66555541 1111111 11114454444444433220 0222 255556677777777
Q ss_pred HHHHHHHHHHH-------hhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006092 599 KYLNAARITQA-------MTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIK 645 (661)
Q Consensus 599 ~~~~~~~~tr~-------~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~ 645 (661)
.|.....+... ....-+..+|-.++..-..|..++.+.|.+|.....
T Consensus 180 ~Ye~lN~~L~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~ 233 (243)
T 4a3a_A 180 VFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77655433222 223333334444555555666677777777665544
No 15
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=77.97 E-value=47 Score=32.75 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=56.5
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHHH
Q 006092 324 KEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISGL 400 (661)
Q Consensus 324 Ka~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~GL 400 (661)
++-++.|..|+++|..+.+....|.....++|.++-+......+..+++..+.+-. +. ++..|++++.++.|
T Consensus 136 ~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~---~~--~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 136 QALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKA---DF--EQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
Confidence 45678899999999999887777888889999999999888888888887775543 33 46778877766543
No 16
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=77.50 E-value=61 Score=32.41 Aligned_cols=177 Identities=15% Similarity=0.221 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhH----
Q 006092 455 FCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQI---- 530 (661)
Q Consensus 455 F~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~---- 530 (661)
|..=...-++|.+.|..|-+++...... .|....|+..|..-+.. .+.+...-..|+..|..-+...-
T Consensus 31 ~keRa~iE~~Yak~L~kL~~~~~~~~~~------~~~~gs~~~aw~~~~~~--~e~~a~~h~~~a~~l~~~v~~~l~~~~ 102 (290)
T 3i2w_A 31 IQERADIEKGYAKSLRTWSKKWGELIEK------GPEYGTTEAAWKGVLTE--SERISDVHMKIKDNLCNDVNSQIKTWQ 102 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567899999999999875321111 23456788899877654 23345555555555533222111
Q ss_pred HHH--------HHhhhh----hHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-C--CCCC-hhhhhH-----HHHHHH
Q 006092 531 EER--------KLHKKI----DRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPE-L--SPKH-PLILKA-----AKVEAL 589 (661)
Q Consensus 531 eE~--------~~k~k~----e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~-~--~~~~-~~~~kr-----~~le~l 589 (661)
.+. +.+++. ..+.+.+.+....+...-.+|...-...+.... . ...+ .++.|. .+++.+
T Consensus 103 ~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~ 182 (290)
T 3i2w_A 103 KENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKT 182 (290)
T ss_dssp HHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTT
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHH
Confidence 111 112222 233445555555555555555322111110000 0 0000 112221 124445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHH
Q 006092 590 KKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEAL 640 (661)
Q Consensus 590 rkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l 640 (661)
..+++..+..|...|..++..... ....+|.+|+.+.++=...+..+.++
T Consensus 183 ~~~~~~a~~~Y~~~v~~~n~~~~~-~~~~~p~~~~~~Q~lee~Ri~~lk~~ 232 (290)
T 3i2w_A 183 KDQVQKCREKYEQAIAEITKYNSV-YIEDMTSVFEKCQTFEKTRLQFFKEI 232 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666888899999999999888765 79999999987776666666555553
No 17
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=72.28 E-value=73 Score=30.81 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 006092 608 QAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKVA 647 (661)
Q Consensus 608 r~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~~ 647 (661)
.......+...|-.++.+-..|...+.+.|+.|...-...
T Consensus 197 ~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l 236 (244)
T 1uru_A 197 YDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 236 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777788888888899988898887755543
No 18
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=70.91 E-value=88 Score=31.17 Aligned_cols=188 Identities=12% Similarity=0.105 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 006092 444 LEAEVTSWYNSFCKLTKFQRDYVRTLSGWIKLTECLVDEHQRSNCSSTIRRLCENWQLVFDKLPEKVASEAINSFLSAIH 523 (661)
Q Consensus 444 Le~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~~~~~~~~~~~~~~~~ppIf~lc~~W~~~ld~lp~~~v~~aIk~f~~~v~ 523 (661)
|-.-+......|+.++..|+++=..+..==.+ .| .+-..|.--.+=+..+.+ -...++.+|+-|.++|+
T Consensus 26 L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~---~p-------~l~~~f~~~~~~~r~~~k-~g~~Ll~~L~~f~s~l~ 94 (224)
T 1i4d_A 26 VLQLGRALTAHLYSLLQTQHALGDAFADLSQK---SP-------ELQEEFGYNAETQKLLCK-NGETLLGAVNFFVSSIN 94 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CG-------GGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---Cc-------HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 33344556677888888888877766543332 11 144555555555555544 44678899999999999
Q ss_pred HHHHhhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 006092 524 AIFLQQIEERKLH-KKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALKKRVESEKAKYLN 602 (661)
Q Consensus 524 ~i~~~Q~eE~~~k-~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~ 602 (661)
++..+=.+.-.+- ++-+..+=||.-=...++++.. .+. +. .+ .. .++...+.+.+.+++|.+
T Consensus 95 T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~--~~~----~~-------~~--l~--rve~~q~~~~~ak~kf~k 157 (224)
T 1i4d_A 95 TLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSL--GPR----DA-------GT--RG--RLESAQATFQAHRDKYEK 157 (224)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhc--ccc----cc-------cc--hh--hHHHHHHHHHHHHHHHHH
Confidence 9987766654432 2223333333322222221111 100 00 01 11 344577777888888888
Q ss_pred HHHHHH-------HhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHH---HhhhcCCCCCCCcc
Q 006092 603 AARITQ-------AMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIK---VAARHNAPEYPEDQ 659 (661)
Q Consensus 603 ~~~~tr-------~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~---~~~~~~~~~~~~~~ 659 (661)
.-.++- +.-.+-+...|-..-.||..|.+.|.++++....+-. .......|+|+|.|
T Consensus 158 LR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f~i~~~~~~~~~~s~le~~ 224 (224)
T 1i4d_A 158 LRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ 224 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccCCCCCCCCcccccC
Confidence 765552 3334667777777888999999999999977654221 23355678888764
No 19
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=66.12 E-value=1.3e+02 Score=31.39 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcc
Q 006092 539 IDRLEKRLQKEFNSMAEMEQRFEGN 563 (661)
Q Consensus 539 ~e~~~kelekk~~~l~~~e~k~~~~ 563 (661)
+....|.|++....++..-.||...
T Consensus 126 ~ke~kk~fek~~~~yd~al~k~~~~ 150 (385)
T 2q13_A 126 ILTLKEVFQIASNDHDAAINRYSRL 150 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466788899888899888888644
No 20
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=64.08 E-value=82 Score=30.86 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=50.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhcCC-chhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccchhhhHHHHHHHH
Q 006092 321 KEVKEEERTKVEHEKKSMILQKQDEENH-DWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEELYPQLATLISG 399 (661)
Q Consensus 321 ~EVKa~E~~r~~yekK~~~Lr~~d~rg~-~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeEL~PQL~eLi~G 399 (661)
+-+|-.+.-++.||+.-..|+++..++. +..+|-++...++.....+.-.-.-+-.---.+..+|-+-+-|.|..++..
T Consensus 148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~ 227 (251)
T 2fic_A 148 SRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL 227 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999988777777665554 455666655555444444432222222333345555666667777777777
Q ss_pred HHHHHHHHHHHH
Q 006092 400 LMRMWRKMYECL 411 (661)
Q Consensus 400 L~~MWk~M~ecH 411 (661)
-....+.|.+.+
T Consensus 228 Q~~f~~~~~~~~ 239 (251)
T 2fic_A 228 EENFHKEMSKLN 239 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766665554433
No 21
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=62.80 E-value=1.2e+02 Score=29.80 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCChhhhhHHHHHHHH
Q 006092 511 ASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEHPELSPKHPLILKAAKVEALK 590 (661)
Q Consensus 511 v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~~~~~~~~~~~~kr~~le~lr 590 (661)
...+-++|..-++.++...-.+. ...+|.++++...++....|+.. .. +.+++..+
T Consensus 116 ~~~v~~~~l~pL~~~l~~d~k~i------~~~rKkle~~rLd~D~ak~k~~k----------------~~--eeEl~~A~ 171 (240)
T 2z0v_A 116 DINVKQTFIDPLQLLQDKDLKEI------GHHLKKLEGRRLDYDYKKKRVGK----------------IP--DEEVRQAV 171 (240)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHH------HHHHHHHHHHHHHHHHHHTTTTS----------------SC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcc----------------cc--HHHHHHHH
Confidence 34445555555555554433322 34456677777777766665531 00 33666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006092 591 KRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIK 645 (661)
Q Consensus 591 krle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~ 645 (661)
.+++...+-....+...-+.-...|. .|-.+.+|-..|-..|.+.+++|.....
T Consensus 172 ~~fe~~~e~~~~~m~~~~~~~~e~l~-~l~~~v~aQl~y~~~~~e~L~~l~~~l~ 225 (240)
T 2z0v_A 172 EKFEESKELAERSMFNFLENDVEQVS-QLAVFIEAALDYHRQSTEILQELQSKLQ 225 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555554444444444445555 6667777777778888888887776554
No 22
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=59.51 E-value=17 Score=32.06 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=44.5
Q ss_pred HhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHH
Q 006092 371 QHSISETCSSILNVIDEELYPQLATLISGLMRMWR--KMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEV 448 (661)
Q Consensus 371 iq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk--~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el 448 (661)
|..||++.-.|--. ++|+|-|.+|+.+|.+|=. .=.+.+.+-.+-+..++ .....+.-+| +-++||--.|
T Consensus 18 IT~mDaLKLn~~a~--DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln---~M~AsdeL~e---~q~RqllfDl 89 (102)
T 2j9w_A 18 ITVMDKLRLEIRAM--DEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLS---SMSASDELDD---SQVRQMLFDL 89 (102)
T ss_dssp HHHHHHHHTTCCBH--HHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHH---TSCTTCBCCH---HHHHHHHHHH
T ss_pred HHHHHHHHhcchhH--HhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHc---CCcccccCCH---HHHHHHHHHH
Confidence 45667666655444 6999999999999999921 11233433333444443 4433333333 2444444445
Q ss_pred HHHHHhHHHH
Q 006092 449 TSWYNSFCKL 458 (661)
Q Consensus 449 ~~W~~sF~~~ 458 (661)
..=|..|...
T Consensus 90 e~aY~~F~~~ 99 (102)
T 2j9w_A 90 ESAYNAFNRF 99 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 23
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=59.01 E-value=1.1e+02 Score=30.37 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhc--------CCchhhhHHHHHHHHhhhh
Q 006092 319 LYKEVKEEERTKVEHEKKSMILQKQDEE--------NHDWTKIEKIRLSVDSLEV 365 (661)
Q Consensus 319 LY~EVKa~E~~r~~yekK~~~Lr~~d~r--------g~~~~~idkTra~Vk~L~t 365 (661)
|-+=++.-++.|..|+.+|+.+.+...+ +.....++|++.-+.....
T Consensus 132 ~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~ 186 (305)
T 2efl_A 132 IETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQ 186 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHH
Confidence 3333456678899999999888765432 3333467777766544433
No 24
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=58.22 E-value=11 Score=32.88 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=43.7
Q ss_pred HhhHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCchhHHHHHHHHHHHHHH
Q 006092 371 QHSISETCSSILNVIDEELYPQLATLISGLMRMWRKMYECLQVQNHISQRLNHVTDNQSMDFTTDYHHQATAQLEAEVTS 450 (661)
Q Consensus 371 iq~vdsis~~I~kLRDeEL~PQL~eLi~GL~~MWk~M~ecH~~Q~~ii~~~~~l~~~~~~~~~s~~h~~at~qLe~el~~ 450 (661)
|..+|++.-.|--. ++|+|-|.+|+.+|.+|=..=.+.+.+-.+-+..++ .....+.-+| +-++||--.|..
T Consensus 15 IT~mDaLKL~~~a~--DqLhP~L~dL~~sl~r~~~~dfegk~kv~~Wl~~Ln---~M~AsdeL~e---~q~RqllfDle~ 86 (96)
T 2j9u_A 15 ITVMDALKLNYNAK--DQLHPLLAELLISINRVTRDDFENRSKLIDWIVRIN---KLSIGDTLTE---TQIRELLFDLEL 86 (96)
T ss_dssp HHHHHHHHTTCCBH--HHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHH---TSCTTCBCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhH--HhhCchHHHHHHHccCCCCCCCchHHHHHHHHHHHc---CCcccccCCH---HHHHHHHHHHHH
Confidence 45666665555444 699999999999999983111233333333344443 4433333333 244455555555
Q ss_pred HHHhHHH
Q 006092 451 WYNSFCK 457 (661)
Q Consensus 451 W~~sF~~ 457 (661)
=|.+|..
T Consensus 87 aY~~F~~ 93 (96)
T 2j9u_A 87 AYKSFYA 93 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 25
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=50.58 E-value=1.9e+02 Score=28.39 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006092 440 ATAQLEAEVTSWYNSFCKLTKFQRDYVRTLSG 471 (661)
Q Consensus 440 at~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~ 471 (661)
.+..|..++..|..+...+..+|..+.++|.+
T Consensus 48 ~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~ 79 (237)
T 4avm_A 48 EGHKLYKDLKNFLSAVKVMHESSKRVSETLQE 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777777766666644
No 26
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=49.88 E-value=2.3e+02 Score=28.98 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHH
Q 006092 585 KVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAF 637 (661)
Q Consensus 585 ~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~ay 637 (661)
+++.+...++..+..|..++..+..... --...+|.||+.+..+=..-+..+
T Consensus 191 k~~k~~~~~~~a~~~Y~~~l~~~n~~~~-~y~~~~~~~~~~~Q~lEe~Ri~~l 242 (320)
T 3m3w_A 191 RVGRCTKEAEKMKTQYEQTLAELNRYTP-RYMEDMEQAFESCQAAERQRLLFF 242 (320)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667778888899999988887663 356778888876554444333333
No 27
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=48.20 E-value=1.4e+02 Score=29.59 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhhcCCc--------hhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhccccc---chhhh
Q 006092 323 VKEEERTKVEHEKKSMILQKQDEENHD--------WTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVID---EELYP 391 (661)
Q Consensus 323 VKa~E~~r~~yekK~~~Lr~~d~rg~~--------~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRD---eEL~P 391 (661)
++.-++.|..|++.|..+.+...+... ...++|.++-+......+.-+-..=-......|+.+. .+.+|
T Consensus 129 ~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p 208 (301)
T 2efk_A 129 FKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMP 208 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999888765444322 1345555555443333222222221222223344433 35567
Q ss_pred HHHHHHHH
Q 006092 392 QLATLISG 399 (661)
Q Consensus 392 QL~eLi~G 399 (661)
++++-++.
T Consensus 209 ~~~~~lQ~ 216 (301)
T 2efk_A 209 QIFDKLQD 216 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 28
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=42.40 E-value=2.3e+02 Score=27.65 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHH
Q 006092 305 HCITLAKLYATEQKLYKE-------VKEEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISET 377 (661)
Q Consensus 305 hssTLdkLyaWEKKLY~E-------VKa~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsi 377 (661)
|.--+-||+.==.|.+++ .+.-..+|..||----.+..|+.+..++.+|.....-+++-.|-+.
T Consensus 96 hgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYk--------- 166 (294)
T 3caz_A 96 HGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYS--------- 166 (294)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHH---------
Confidence 445556666555565554 4577899999999888889999989999999888877777666554
Q ss_pred HhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 006092 378 CSSILNVIDEELYPQLATLISGLMRMWRKM 407 (661)
Q Consensus 378 s~~I~kLRDeEL~PQL~eLi~GL~~MWk~M 407 (661)
--+.+||+.|-..|+.-
T Consensus 167 -------------qvcsDiInkMnkll~n~ 183 (294)
T 3caz_A 167 -------------SVCADLIQKMETVWKKH 183 (294)
T ss_dssp -------------HHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHH
Confidence 22467888888888754
No 29
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=41.80 E-value=1.9e+02 Score=29.68 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=31.4
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhc-----C---CchhhhHHHHHHHHhh-------hhhHHHHHhhHHHH
Q 006092 324 KEEERTKVEHEKKSMILQKQDEE-----N---HDWTKIEKIRLSVDSL-------EVDIRRLQHSISET 377 (661)
Q Consensus 324 Ka~E~~r~~yekK~~~Lr~~d~r-----g---~~~~~idkTra~Vk~L-------~tri~Vaiq~vdsi 377 (661)
+.-++.|..|+++|+.+.....+ | .....++|.+.-+..+ ...|..+++..+.+
T Consensus 157 ~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 225 (350)
T 3aco_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG 225 (350)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999887665431 1 1234455555554444 44455555555443
No 30
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=31.99 E-value=99 Score=30.86 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhhc--------CCchhhh-------HHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccc
Q 006092 323 VKEEERTKVEHEKKSMILQKQDEE--------NHDWTKI-------EKIRLSVDSLEVDIRRLQHSISETCSSILNVIDE 387 (661)
Q Consensus 323 VKa~E~~r~~yekK~~~Lr~~d~r--------g~~~~~i-------dkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDe 387 (661)
++.-++.|..|++.|...+....+ +.....+ +++...+......|..+++....+-.. . +
T Consensus 134 ~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~---~--~ 208 (290)
T 3i2w_A 134 LAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV---Y--I 208 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHH---H--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---H--H
Confidence 345678899999999875444321 1112223 333444555566666666666555332 1 5
Q ss_pred hhhhHHHHHHHHH
Q 006092 388 ELYPQLATLISGL 400 (661)
Q Consensus 388 EL~PQL~eLi~GL 400 (661)
+.+|++++-+|.|
T Consensus 209 ~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 209 EDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666555543
No 31
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=31.42 E-value=23 Score=34.70 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCcCCCCC
Q 006092 120 STSPPQIGTSVWDYLDPF 137 (661)
Q Consensus 120 pPPPpPp~~ssWDffdPf 137 (661)
-|||.||.++.||||+-|
T Consensus 185 ~~ppip~~P~~~dF~~~~ 202 (203)
T 3a98_B 185 APPPIPKEPSNYDFVYDC 202 (203)
T ss_dssp SCCCCCCCCSCCCCSSCC
T ss_pred CCCCCCcCCCCcceeeec
Confidence 345566666789998754
No 32
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=31.35 E-value=26 Score=27.86 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHHHHHHHhh----------hhhHHHHHHHHHHHhhhhhcCC
Q 006092 316 EQKLYKEVKEE----------ERTKVEHEKKSMILQKQDEENH 348 (661)
Q Consensus 316 EKKLY~EVKa~----------E~~r~~yekK~~~Lr~~d~rg~ 348 (661)
|.+||++++.. .+.++.=|.=+..||+|++||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 88999999964 4444455666789999999995
No 33
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.11 E-value=2.2e+02 Score=30.26 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=36.0
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhcCCch---hhhHHHHHHHHh-------hhhhHHHHHhhHHHHHhhhcccccc---hhh
Q 006092 324 KEEERTKVEHEKKSMILQKQDEENHDW---TKIEKIRLSVDS-------LEVDIRRLQHSISETCSSILNVIDE---ELY 390 (661)
Q Consensus 324 Ka~E~~r~~yekK~~~Lr~~d~rg~~~---~~idkTra~Vk~-------L~tri~Vaiq~vdsis~~I~kLRDe---EL~ 390 (661)
+.-++.|..|++.|+.......+-.+. ..++|++.-... .+..|..++++. |+.++. +.+
T Consensus 134 ~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~l 206 (406)
T 4dyl_A 134 QDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLL 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 566788999999998876554432111 234444444433 334555555443 333333 667
Q ss_pred hHHHHHHH
Q 006092 391 PQLATLIS 398 (661)
Q Consensus 391 PQL~eLi~ 398 (661)
|++++-++
T Consensus 207 p~~~d~lQ 214 (406)
T 4dyl_A 207 PGLLRSLQ 214 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666433
No 34
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=28.36 E-value=2.8e+02 Score=27.74 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=46.1
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhc-----C---Cc-------hhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhcccccch
Q 006092 324 KEEERTKVEHEKKSMILQKQDEE-----N---HD-------WTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNVIDEE 388 (661)
Q Consensus 324 Ka~E~~r~~yekK~~~Lr~~d~r-----g---~~-------~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kLRDeE 388 (661)
+.-++.|..|+++|+.+.....+ | .. ..+++|++..+......|..+++..+.+-..- ++
T Consensus 157 ~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-----~~ 231 (312)
T 3abh_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY-----ME 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HH
Confidence 44578899999999987665431 1 11 12345666667777788888888887763332 35
Q ss_pred hhhHHHHHHHHH
Q 006092 389 LYPQLATLISGL 400 (661)
Q Consensus 389 L~PQL~eLi~GL 400 (661)
.+|.+++-++.|
T Consensus 232 ~~~~~~~~~Q~l 243 (312)
T 3abh_A 232 NMEQVFEQCQQF 243 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666655554
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.23 E-value=2.7e+02 Score=24.75 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHhhh
Q 006092 496 CENWQLVFDKLPEKVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNS----MAEMEQRFE 561 (661)
Q Consensus 496 c~~W~~~ld~lp~~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~----l~~~e~k~~ 561 (661)
+..|...+.. ...+...+|.++=..|..+-.....=+..-|..|...-||||..+. |.+++.||.
T Consensus 19 ~e~~k~K~~~-~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 19 VEALKEKLEH-QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 6788888877 5567777888888888887655555555556778888899988754 888888885
No 36
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=26.48 E-value=4.7e+02 Score=25.67 Aligned_cols=128 Identities=10% Similarity=0.145 Sum_probs=67.7
Q ss_pred HHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 006092 494 RLCENWQLVFDKLPE---KVASEAINSFLSAIHAIFLQQIEERKLHKKIDRLEKRLQKEFNSMAEMEQRFEGNFAVGVEH 570 (661)
Q Consensus 494 ~lc~~W~~~ld~lp~---~~v~~aIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~kelekk~~~l~~~e~k~~~~~~~~~~~ 570 (661)
..+..+..++.+|-+ .-....-+.|+.-++.++...-.+.+ ...|.++++...++....|+...
T Consensus 112 ~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~------k~rkkl~~~rLdyD~~k~k~~k~------- 178 (256)
T 1zww_A 112 PALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQ------HHLKKLEGRRLDFGYKKKRQGKI------- 178 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHH------HHHHHHHHHHHHHHHHHHTTTTS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccc-------
Confidence 344444444444332 22334445555566555544433322 33455555656666555554310
Q ss_pred CCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006092 571 PELSPKHPLILKAAKVEALKKRVESEKAKYLNAARITQAMTLNNLKTSLPNVFQALMGFSNASAKAFEALHSHIKV 646 (661)
Q Consensus 571 ~~~~~~~~~~~kr~~le~lrkrle~e~~~~~~~~~~tr~~tl~~Lq~gLp~vF~al~~Fs~~~~~aye~l~~~~~~ 646 (661)
. +.+++..+.+.+.-.+.....+...-+.....+ ..|-.+.+|-..|-..|.+.+++|......
T Consensus 179 ---------~--eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e~~-~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 179 ---------P--DEELRQALEKFDESKEIAESSMFNLLEMDIEQV-SQLSALVQAQLEYHKQAVQILQQVTVRLEE 242 (256)
T ss_dssp ---------C--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 235665666655555444444443333333444 556677778888888888888888776553
No 37
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=26.08 E-value=5.2e+02 Score=26.05 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-----c---CCchhhhHHHHHHHH-------hhhhhHHHHHhhHHHHHh
Q 006092 315 TEQKLYKEVKEEERTKVEHEKKSMILQKQDE-----E---NHDWTKIEKIRLSVD-------SLEVDIRRLQHSISETCS 379 (661)
Q Consensus 315 WEKKLY~EVKa~E~~r~~yekK~~~Lr~~d~-----r---g~~~~~idkTra~Vk-------~L~tri~Vaiq~vdsis~ 379 (661)
.+|.|=+=++.-++.|..|+.+|+.+..... + +.....++|.+.-+. .....|..+++..+.+-.
T Consensus 139 ~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~ 218 (337)
T 2x3v_A 139 AQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTP 218 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444456668889999999988553321 1 122334455444444 444455555555554422
Q ss_pred hhcccccchhhhHHHHHHHH
Q 006092 380 SILNVIDEELYPQLATLISG 399 (661)
Q Consensus 380 ~I~kLRDeEL~PQL~eLi~G 399 (661)
. =++.+|.+++.++.
T Consensus 219 ~-----~~~~~~~~~~~~Q~ 233 (337)
T 2x3v_A 219 Q-----YMEGMEQVFEQCQQ 233 (337)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 1 13445666555554
No 38
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=23.82 E-value=63 Score=26.91 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHHHHhhHHHHHhhhcccccchhhhH---HHHHHHHHH
Q 006092 367 IRRLQHSISETCSSILNVIDEELYPQ---LATLISGLM 401 (661)
Q Consensus 367 i~Vaiq~vdsis~~I~kLRDeEL~PQ---L~eLi~GL~ 401 (661)
++|+||+|++-.+++..+-|++--|- |-.|+-|+-
T Consensus 8 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~fd 45 (85)
T 3rq9_A 8 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYD 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhhH
Confidence 67999999999999999999999998 666666654
No 39
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=23.03 E-value=74 Score=27.19 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHhhHHHHHhhhcccccchhhhH---HHHHHHHH
Q 006092 367 IRRLQHSISETCSSILNVIDEELYPQ---LATLISGL 400 (661)
Q Consensus 367 i~Vaiq~vdsis~~I~kLRDeEL~PQ---L~eLi~GL 400 (661)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 33 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 69 (102)
T 3stq_A 33 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhh
Confidence 67999999999999999999999998 55555554
No 40
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=22.92 E-value=18 Score=37.87 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 006092 16 ICRQRKRAMK 25 (661)
Q Consensus 16 ~CkeRkr~~k 25 (661)
.++.++|..|
T Consensus 252 ~~~~~~k~~~ 261 (448)
T 2z73_A 252 GANAEMRLAK 261 (448)
T ss_dssp HHHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 3444444444
No 41
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=22.33 E-value=5.8e+02 Score=25.26 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006092 442 AQLEAEVTSWYNSFCKLTKFQRDYVRTLSGWIK 474 (661)
Q Consensus 442 ~qLe~el~~W~~sF~~~i~~Qk~Yv~aLn~WL~ 474 (661)
.-..+.+..++=...++|+.-+.|.+||++=..
T Consensus 16 ~~y~nimeqfnP~l~nlv~lg~~Y~kAl~a~~~ 48 (222)
T 3ok8_A 16 AIYKSIMEQFNPALENLVYLGNNYLRAFHALSE 48 (222)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 344556777777788888888888888777655
No 42
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.68 E-value=3.1e+02 Score=26.61 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=46.0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhhHHHHHhhHHHHHhhhccc-ccchhhhHHHH
Q 006092 325 EEERTKVEHEKKSMILQKQDEENHDWTKIEKIRLSVDSLEVDIRRLQHSISETCSSILNV-IDEELYPQLAT 395 (661)
Q Consensus 325 a~E~~r~~yekK~~~Lr~~d~rg~~~~~idkTra~Vk~L~tri~Vaiq~vdsis~~I~kL-RDeEL~PQL~e 395 (661)
+..+++-.|+||-++...+..+-. +...-++| .+-|.+|=-+--...+.+-.++.+| .|.+-|+.|+.
T Consensus 54 ~~~~i~~~~ek~~kq~e~~~~i~~-S~~~~~aR--~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~ 122 (233)
T 4efa_E 54 ETNNIDGNFKSKLKKAMLSQQITK-STIANKMR--LKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQ 122 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 446677788888877765554432 22223333 4557777777778888888888888 47888888765
No 43
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.54 E-value=8.2e+02 Score=26.32 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 006092 443 QLEAEVTSWYNSFCKLTKFQRDYVR 467 (661)
Q Consensus 443 qLe~el~~W~~sF~~~i~~Qk~Yv~ 467 (661)
.+......|...+..+.++.+.|-.
T Consensus 137 ~~~k~qk~l~~~~~~l~KaKk~Y~~ 161 (486)
T 3haj_A 137 GFRKAQKPWAKKLKEVEAAKKAHHA 161 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777777777755
Done!