BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006093
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 154/344 (44%), Gaps = 46/344 (13%)
Query: 259 VITELGYPYEAIRVETSDGYVLLLERIP--RRDA-----RKAVYLQHGILDSSMGWVSNG 311
+IT GYP E V T DGY+L ++RIP R+++ R +LQHG+L S+ W+SN
Sbjct: 19 MITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNL 78
Query: 312 VVGSPAFAAYDQGYDVFLGNFRG-LVSREHVNKDISSRRYWKYSINEHGTEDIPAMIEKI 370
S AF D GYDV+LGN RG +R ++ S +W +S +E D+PA I+ I
Sbjct: 79 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 138
Query: 371 HEIKTSELKISQPDVKEEINEAQPYKLCAICHSLGGAAILMYVITCRIEEKPHRLSRLIL 430
LK + D KL + HS G + ++ + R+
Sbjct: 139 -------LKKTGQD-----------KLHYVGHSQG--TTIGFIAFSTNPKLAKRIKTFYA 178
Query: 431 LSPAGFHDDSTLVF--TVAEYLFLVSAPILAYIV-PAFYIPTKFFRMLLNKLARDFHNYP 487
L+P +T+ + T+ L LV + + I + P FF LA + +
Sbjct: 179 LAPV-----ATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQF---LATEVCSRE 230
Query: 488 AVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVAHHLAQMKHTGKFRMFDY 547
V L + + G D+ N + + L Y ++ G S + H +Q +GKF+ FD+
Sbjct: 231 TVDLLCSNALFIICGFDTMN-LNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDW 289
Query: 548 GSVRENMEVYGSPEPVDLGEYYRFID--IPVDLVAGRKDKVIRP 589
GS +NM Y P YY D +P+ + G D + P
Sbjct: 290 GSPVQNMMHYHQSMP----PYYNLTDMHVPIAVWNGGNDLLADP 329
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 149/347 (42%), Gaps = 46/347 (13%)
Query: 259 VITELGYPYEAIRVETSDGYVLLLERIP-------RRDARKAVYLQHGILDSSMGWVSNG 311
+IT GYP E V T DGY+L + RIP R V+LQHG+L S+ W+SN
Sbjct: 11 MITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISNL 70
Query: 312 VVGSPAFAAYDQGYDVFLGNFRG-LVSREHVNKDISSRRYWKYSINEHGTEDIPAMIEKI 370
S AF D GYDV+LGN RG +R ++ S +W +S +E D+PA I+ I
Sbjct: 71 PNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFI 130
Query: 371 HEIKTSELKISQPDVKEEINEAQPYKLCAICHSLGGAAILMYVITCRIEEKPHRLSRLIL 430
+K + K +L + HS G + ++ R+
Sbjct: 131 --VKKTGQK----------------QLHYVGHSQG--TTIGFIAFSTNPSLAKRIKTFYA 170
Query: 431 LSPAGFHDDSTLVFT--VAEYLFLVSAPILAYIV-PAFYIPTKFFRMLLNKLARDFHNYP 487
L+P +T+ +T + L V + +I + P FF LA + +
Sbjct: 171 LAPV-----ATVKYTKSLINKLRFVPQSLFKFIFGDKIFYPHNFFDQF---LATEVCSRE 222
Query: 488 AVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVAHHLAQMKHTGKFRMFDY 547
+ L + + G DS N+ L Y ++ G S + H Q +GKF+ +D+
Sbjct: 223 MLNLLCSNALFIICGFDSKNF-NTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDW 281
Query: 548 GSVRENMEVYGSPEPVDLGEYYRF--IDIPVDLVAGRKDKVIRPSMV 592
GS +N Y +P YY +++P+ + G KD + P V
Sbjct: 282 GSPVQNRMHYDQSQP----PYYNVTAMNVPIAVWNGGKDLLADPQDV 324
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 564 DLGEYYRFIDIPVDLVAGRKDKVIRPSMVRKHYRLMKDSGVDVSYNEFEYAHLDFTFSHR 623
DL R IPV + G +D V+ P++ R + ++ GV+V ++++ H + +
Sbjct: 157 DLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYPMGH-EVSLEEI 215
Query: 624 EELLAYVMSRL 634
++ A++ RL
Sbjct: 216 HDIGAWLRKRL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,789,757
Number of Sequences: 62578
Number of extensions: 837756
Number of successful extensions: 1665
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 9
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)