Query 006094
Match_columns 661
No_of_seqs 505 out of 3241
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 18:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 4E-178 8E-183 1468.5 47.2 655 1-659 1-655 (656)
2 COG0572 Udk Uridine kinase [Nu 100.0 1.3E-34 2.8E-39 290.4 17.0 174 64-238 6-188 (218)
3 PTZ00301 uridine kinase; Provi 100.0 5E-30 1.1E-34 257.9 15.5 175 66-241 3-190 (210)
4 PF00485 PRK: Phosphoribulokin 100.0 1.6E-28 3.5E-33 242.4 12.7 171 68-240 1-188 (194)
5 cd02029 PRK_like Phosphoribulo 99.9 2E-27 4.4E-32 245.4 15.0 169 68-238 1-200 (277)
6 COG1437 CyaB Adenylate cyclase 99.9 1.5E-26 3.3E-31 224.5 16.2 151 261-413 12-177 (178)
7 PRK05480 uridine/cytidine kina 99.9 8.4E-26 1.8E-30 224.9 15.6 178 65-243 5-191 (209)
8 KOG4203 Armadillo/beta-Catenin 99.9 3.5E-27 7.5E-32 261.8 5.4 399 61-619 39-463 (473)
9 PLN02348 phosphoribulokinase 99.9 1.6E-25 3.4E-30 241.9 17.2 176 60-238 43-242 (395)
10 cd02028 UMPK_like Uridine mono 99.9 1.9E-25 4.1E-30 219.0 13.9 169 68-238 1-178 (179)
11 cd02025 PanK Pantothenate kina 99.9 2.2E-25 4.7E-30 225.5 13.5 174 68-241 1-211 (220)
12 PRK15453 phosphoribulokinase; 99.9 4.4E-25 9.5E-30 229.6 16.0 173 65-238 4-206 (290)
13 TIGR00318 cyaB adenylyl cyclas 99.9 1.5E-24 3.2E-29 212.2 17.1 147 263-410 14-173 (174)
14 TIGR00235 udk uridine kinase. 99.9 2.8E-24 6.1E-29 214.2 15.8 174 67-241 7-189 (207)
15 cd02023 UMPK Uridine monophosp 99.9 2.3E-23 5.1E-28 205.5 15.8 175 68-243 1-184 (198)
16 cd02026 PRK Phosphoribulokinas 99.9 5.9E-23 1.3E-27 214.3 16.1 171 68-241 1-178 (273)
17 PRK07429 phosphoribulokinase; 99.9 6.1E-23 1.3E-27 219.1 16.3 176 63-241 5-187 (327)
18 TIGR00554 panK_bact pantothena 99.9 6.4E-23 1.4E-27 215.5 15.7 179 63-241 59-279 (290)
19 PRK05439 pantothenate kinase; 99.9 1.5E-22 3.3E-27 214.3 17.0 180 62-241 82-299 (311)
20 PRK09270 nucleoside triphospha 99.8 2.7E-20 5.9E-25 188.7 14.4 180 62-243 29-224 (229)
21 PRK06696 uridine kinase; Valid 99.8 5.2E-20 1.1E-24 185.9 13.9 178 63-241 19-211 (223)
22 cd02024 NRK1 Nicotinamide ribo 99.8 2.4E-19 5.2E-24 177.7 7.9 158 68-225 1-179 (187)
23 cd07890 CYTH-like_AC_IV-like A 99.8 3.3E-18 7.2E-23 166.0 15.2 146 262-408 11-169 (169)
24 COG1135 AbcC ABC-type metal io 99.8 2.3E-20 5.1E-25 194.7 -4.2 265 33-338 1-296 (339)
25 PRK07667 uridine kinase; Provi 99.7 5.7E-18 1.2E-22 167.8 10.4 165 63-237 14-192 (193)
26 COG3842 PotA ABC-type spermidi 99.7 6.8E-19 1.5E-23 188.9 1.8 143 32-181 4-170 (352)
27 COG1126 GlnQ ABC-type polar am 99.7 2.6E-18 5.6E-23 172.0 5.0 168 33-214 2-196 (240)
28 COG3839 MalK ABC-type sugar tr 99.7 1.2E-17 2.5E-22 178.5 1.3 142 33-181 3-167 (338)
29 COG1116 TauB ABC-type nitrate/ 99.7 3.4E-17 7.4E-22 167.3 3.5 173 33-218 3-195 (248)
30 COG1136 SalX ABC-type antimicr 99.6 6.1E-17 1.3E-21 164.4 4.2 146 33-181 1-176 (226)
31 COG1118 CysA ABC-type sulfate/ 99.6 4.9E-17 1.1E-21 169.8 2.4 142 33-181 2-171 (345)
32 PRK06547 hypothetical protein; 99.6 3.5E-15 7.7E-20 146.0 12.2 153 63-238 12-171 (172)
33 TIGR02314 ABC_MetN D-methionin 99.6 2.5E-16 5.4E-21 169.5 2.9 145 33-180 1-173 (343)
34 COG1127 Ttg2A ABC-type transpo 99.6 1E-15 2.2E-20 155.6 5.6 200 31-270 6-235 (263)
35 COG1072 CoaA Panthothenate kin 99.6 1.4E-14 3E-19 150.0 13.5 179 60-240 76-271 (283)
36 COG1124 DppF ABC-type dipeptid 99.6 1.2E-15 2.6E-20 155.2 5.0 146 32-180 2-174 (252)
37 COG1125 OpuBA ABC-type proline 99.6 1.2E-15 2.6E-20 156.1 4.9 172 33-217 1-199 (309)
38 PRK08233 hypothetical protein; 99.6 2.9E-14 6.3E-19 137.5 14.0 152 66-240 3-161 (182)
39 cd02022 DPCK Dephospho-coenzym 99.5 5.5E-14 1.2E-18 137.6 8.9 161 68-244 1-178 (179)
40 PLN03046 D-glycerate 3-kinase; 99.5 1.2E-13 2.6E-18 150.8 12.4 164 64-228 210-431 (460)
41 PF01121 CoaE: Dephospho-CoA k 99.5 3E-14 6.6E-19 140.5 6.8 161 67-243 1-178 (180)
42 PRK11153 metN DL-methionine tr 99.5 9.7E-15 2.1E-19 157.1 3.4 145 33-180 1-173 (343)
43 COG3638 ABC-type phosphate/pho 99.5 1.5E-14 3.2E-19 146.8 4.2 143 32-180 2-180 (258)
44 PRK09452 potA putrescine/sperm 99.5 2E-14 4.4E-19 156.5 5.5 143 31-180 12-177 (375)
45 TIGR03265 PhnT2 putative 2-ami 99.5 1.9E-14 4.2E-19 155.5 5.1 142 32-180 3-167 (353)
46 PRK11432 fbpC ferric transport 99.5 2.9E-14 6.2E-19 154.1 5.2 142 32-180 5-169 (351)
47 PRK11650 ugpC glycerol-3-phosp 99.5 3.4E-14 7.3E-19 153.8 4.8 142 33-180 3-167 (356)
48 PRK13537 nodulation ABC transp 99.5 5.3E-14 1.2E-18 149.1 6.1 143 31-180 5-171 (306)
49 COG2884 FtsE Predicted ATPase 99.5 3.9E-14 8.4E-19 139.8 4.3 142 33-180 1-170 (223)
50 PRK11607 potG putrescine trans 99.4 4.7E-14 1E-18 153.8 5.1 143 31-180 17-182 (377)
51 COG0411 LivG ABC-type branched 99.4 4.3E-14 9.3E-19 144.1 4.1 199 32-270 3-239 (250)
52 PRK14732 coaE dephospho-CoA ki 99.4 9.6E-14 2.1E-18 138.6 6.0 161 68-244 1-178 (196)
53 PRK14730 coaE dephospho-CoA ki 99.4 1.7E-13 3.7E-18 136.5 7.2 162 67-243 2-181 (195)
54 COG1120 FepC ABC-type cobalami 99.4 5.9E-14 1.3E-18 145.3 3.8 165 41-214 6-199 (258)
55 PRK14734 coaE dephospho-CoA ki 99.4 3.1E-13 6.7E-18 135.2 8.7 164 67-244 2-182 (200)
56 PRK14733 coaE dephospho-CoA ki 99.4 4.4E-13 9.6E-18 134.8 9.8 163 65-244 5-186 (204)
57 PRK13536 nodulation factor exp 99.4 1.6E-13 3.4E-18 147.7 7.0 143 31-180 39-205 (340)
58 COG1131 CcmA ABC-type multidru 99.4 7.9E-14 1.7E-18 147.2 4.3 158 33-204 4-186 (293)
59 TIGR03258 PhnT 2-aminoethylpho 99.4 1.4E-13 3.1E-18 149.2 6.0 142 32-180 4-170 (362)
60 PRK10851 sulfate/thiosulfate t 99.4 1.9E-13 4.1E-18 147.8 6.4 141 33-180 2-169 (353)
61 COG1122 CbiO ABC-type cobalt t 99.4 4.6E-13 9.9E-18 137.4 8.9 142 33-180 3-171 (235)
62 PRK00081 coaE dephospho-CoA ki 99.4 6.4E-13 1.4E-17 132.0 9.6 162 66-243 2-180 (194)
63 PRK09473 oppD oligopeptide tra 99.4 2.9E-13 6.2E-18 145.1 7.2 153 25-180 4-194 (330)
64 PRK11000 maltose/maltodextrin 99.4 2E-13 4.3E-18 148.4 5.6 141 33-180 3-166 (369)
65 PRK14731 coaE dephospho-CoA ki 99.4 4.8E-13 1E-17 134.3 8.0 167 64-244 3-190 (208)
66 TIGR01288 nodI ATP-binding ABC 99.4 2.6E-13 5.7E-18 143.3 6.2 142 32-180 3-168 (303)
67 PTZ00451 dephospho-CoA kinase; 99.4 8.5E-13 1.8E-17 136.1 9.2 168 66-244 1-195 (244)
68 PLN02796 D-glycerate 3-kinase 99.4 2E-12 4.4E-17 138.8 12.4 175 51-226 80-317 (347)
69 TIGR00960 3a0501s02 Type II (G 99.4 4E-13 8.7E-18 134.3 6.2 143 33-180 1-171 (216)
70 PRK15079 oligopeptide ABC tran 99.4 4.2E-13 9.1E-18 143.9 6.7 147 31-180 6-194 (331)
71 cd03258 ABC_MetN_methionine_tr 99.4 4E-13 8.7E-18 135.8 6.1 145 33-180 1-173 (233)
72 COG1123 ATPase components of v 99.4 3.5E-13 7.6E-18 151.1 5.9 148 31-181 278-463 (539)
73 cd03261 ABC_Org_Solvent_Resist 99.4 5.9E-13 1.3E-17 134.9 7.0 139 35-180 2-169 (235)
74 PLN02422 dephospho-CoA kinase 99.4 1.1E-12 2.4E-17 134.3 8.5 164 67-244 2-182 (232)
75 PRK11629 lolD lipoprotein tran 99.4 6.6E-13 1.4E-17 134.5 6.8 146 32-180 4-178 (233)
76 KOG0058 Peptide exporter, ABC 99.4 1.7E-13 3.7E-18 156.2 2.8 195 7-214 433-663 (716)
77 PRK11308 dppF dipeptide transp 99.4 6.2E-13 1.3E-17 142.4 6.8 147 31-180 3-187 (327)
78 COG4555 NatA ABC-type Na+ tran 99.4 8.9E-14 1.9E-18 138.4 0.2 142 33-180 1-166 (245)
79 TIGR02315 ABC_phnC phosphonate 99.4 7.9E-13 1.7E-17 134.3 6.6 142 33-180 1-178 (243)
80 PRK09493 glnQ glutamine ABC tr 99.4 8E-13 1.7E-17 134.3 6.6 141 33-180 1-169 (240)
81 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 7.4E-13 1.6E-17 132.4 6.2 143 35-180 2-173 (218)
82 COG4152 ABC-type uncharacteriz 99.4 1.9E-13 4.1E-18 139.3 1.9 168 33-214 2-190 (300)
83 PRK11831 putative ABC transpor 99.3 9.2E-13 2E-17 136.7 6.7 143 31-180 5-176 (269)
84 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 4.7E-13 1E-17 138.2 4.3 143 32-181 3-173 (254)
85 COG4181 Predicted ABC-type tra 99.3 4.8E-13 1E-17 130.3 3.7 147 31-180 4-179 (228)
86 cd03296 ABC_CysA_sulfate_impor 99.3 1.4E-12 3E-17 132.7 7.2 141 33-180 2-169 (239)
87 cd03265 ABC_DrrA DrrA is the A 99.3 1.1E-12 2.5E-17 131.5 6.6 139 35-180 2-164 (220)
88 TIGR01188 drrA daunorubicin re 99.3 5.8E-13 1.3E-17 140.6 4.6 130 48-180 4-157 (302)
89 PF01928 CYTH: CYTH domain; I 99.3 8.1E-12 1.7E-16 121.8 12.3 131 275-409 30-183 (185)
90 PRK10584 putative ABC transpor 99.3 1.4E-12 3E-17 131.5 7.0 147 31-180 4-179 (228)
91 TIGR02673 FtsE cell division A 99.3 8.6E-13 1.9E-17 131.5 5.5 142 33-180 1-170 (214)
92 cd03293 ABC_NrtD_SsuB_transpor 99.3 1E-12 2.3E-17 131.8 6.1 143 35-180 2-164 (220)
93 TIGR02211 LolD_lipo_ex lipopro 99.3 1.2E-12 2.5E-17 131.3 6.3 144 34-180 2-174 (221)
94 PRK13643 cbiO cobalt transport 99.3 7.8E-13 1.7E-17 138.9 5.3 144 33-180 1-177 (288)
95 cd03269 ABC_putative_ATPase Th 99.3 1.2E-12 2.6E-17 130.3 6.2 139 35-180 2-161 (210)
96 cd03266 ABC_NatA_sodium_export 99.3 8E-13 1.7E-17 132.2 4.9 145 33-180 1-169 (218)
97 PRK10070 glycine betaine trans 99.3 7.4E-13 1.6E-17 145.5 4.9 130 48-180 39-197 (400)
98 PRK10619 histidine/lysine/argi 99.3 1.2E-12 2.7E-17 134.5 6.2 143 31-180 3-185 (257)
99 PRK13543 cytochrome c biogenes 99.3 2.9E-12 6.2E-17 128.5 8.6 142 32-180 10-170 (214)
100 COG0444 DppD ABC-type dipeptid 99.3 1.1E-12 2.3E-17 138.6 5.8 203 34-272 2-245 (316)
101 cd07762 CYTH-like_Pase_1 Uncha 99.3 1.3E-11 2.9E-16 121.8 13.0 119 278-400 27-171 (180)
102 PRK13646 cbiO cobalt transport 99.3 9.2E-13 2E-17 138.1 5.0 143 34-180 3-178 (286)
103 cd03219 ABC_Mj1267_LivG_branch 99.3 1.2E-12 2.6E-17 132.4 5.6 138 36-180 3-176 (236)
104 PRK13651 cobalt transporter AT 99.3 8.7E-13 1.9E-17 139.9 4.7 145 33-180 2-198 (305)
105 COG4608 AppF ABC-type oligopep 99.3 3.3E-12 7.2E-17 132.3 8.6 135 32-181 3-143 (268)
106 cd03218 ABC_YhbG The ABC trans 99.3 1.6E-12 3.5E-17 131.1 6.3 139 35-180 2-166 (232)
107 COG4598 HisP ABC-type histidin 99.3 8.1E-13 1.7E-17 129.6 3.7 168 33-214 6-212 (256)
108 cd03215 ABC_Carb_Monos_II This 99.3 2.8E-12 6E-17 125.5 7.5 123 32-180 3-137 (182)
109 PRK13637 cbiO cobalt transport 99.3 1.4E-12 3.1E-17 136.8 5.8 144 34-180 3-177 (287)
110 cd03230 ABC_DR_subfamily_A Thi 99.3 1.8E-12 3.8E-17 125.9 6.0 119 36-180 3-128 (173)
111 cd03233 ABC_PDR_domain1 The pl 99.3 1.9E-12 4.1E-17 129.0 6.3 138 34-180 4-151 (202)
112 TIGR01186 proV glycine betaine 99.3 7.4E-13 1.6E-17 143.8 3.6 130 48-180 4-162 (363)
113 cd03232 ABC_PDR_domain2 The pl 99.3 2.5E-12 5.3E-17 127.0 6.9 133 33-180 3-141 (192)
114 PRK14247 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 131.3 7.3 141 33-180 3-179 (250)
115 PRK13634 cbiO cobalt transport 99.3 1.4E-12 3E-17 137.2 5.3 143 34-180 3-178 (290)
116 PRK11614 livF leucine/isoleuci 99.3 1.1E-12 2.4E-17 133.0 4.5 142 32-180 4-170 (237)
117 cd03259 ABC_Carb_Solutes_like 99.3 1.7E-12 3.6E-17 129.5 5.5 139 35-180 2-163 (213)
118 cd03268 ABC_BcrA_bacitracin_re 99.3 2.2E-12 4.8E-17 128.2 6.3 139 35-180 2-159 (208)
119 PRK15093 antimicrobial peptide 99.3 2.5E-12 5.3E-17 137.8 7.1 145 33-180 3-191 (330)
120 COG4525 TauB ABC-type taurine 99.3 6.7E-13 1.5E-17 131.7 2.5 129 49-180 17-165 (259)
121 PRK11144 modC molybdate transp 99.3 2.2E-12 4.7E-17 139.4 6.7 138 33-180 1-161 (352)
122 TIGR03608 L_ocin_972_ABC putat 99.3 1.5E-12 3.3E-17 128.9 5.0 130 48-180 9-167 (206)
123 PRK13540 cytochrome c biogenes 99.3 3.1E-12 6.7E-17 126.9 7.0 141 33-180 1-160 (200)
124 PRK10908 cell division protein 99.3 2.2E-12 4.8E-17 129.6 5.9 142 33-180 1-170 (222)
125 PRK11022 dppD dipeptide transp 99.3 2E-12 4.4E-17 138.4 5.9 145 33-180 3-186 (326)
126 cd03224 ABC_TM1139_LivF_branch 99.3 2.1E-12 4.5E-17 129.3 5.6 139 35-180 2-165 (222)
127 PRK03333 coaE dephospho-CoA ki 99.3 5.2E-12 1.1E-16 138.7 9.1 257 67-348 2-288 (395)
128 PRK15439 autoinducer 2 ABC tra 99.3 2.3E-12 5E-17 145.3 6.5 147 27-180 5-173 (510)
129 PRK11300 livG leucine/isoleuci 99.3 3.5E-12 7.7E-17 130.6 7.0 142 32-180 4-186 (255)
130 PRK09536 btuD corrinoid ABC tr 99.3 2.9E-12 6.2E-17 140.9 6.7 141 33-180 3-172 (402)
131 PRK11124 artP arginine transpo 99.3 3.4E-12 7.4E-17 129.9 6.8 141 33-180 2-174 (242)
132 PRK14242 phosphate transporter 99.3 3.6E-12 7.8E-17 130.5 6.9 142 31-180 4-182 (253)
133 PRK14250 phosphate ABC transpo 99.3 2.9E-12 6.3E-17 130.7 6.2 140 33-180 3-164 (241)
134 PRK11248 tauB taurine transpor 99.3 2.9E-12 6.4E-17 132.2 6.3 141 33-180 1-161 (255)
135 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 4E-12 8.7E-17 129.0 7.0 141 33-180 1-165 (236)
136 PRK10261 glutathione transport 99.3 2.9E-12 6.3E-17 148.0 6.8 146 32-180 11-201 (623)
137 PRK13538 cytochrome c biogenes 99.3 3.7E-12 8E-17 126.7 6.6 141 33-180 1-162 (204)
138 PRK10895 lipopolysaccharide AB 99.3 4.1E-12 8.9E-17 129.2 7.1 141 33-180 3-170 (241)
139 PRK11264 putative amino-acid A 99.3 3.5E-12 7.6E-17 130.3 6.5 141 33-180 3-177 (250)
140 cd03257 ABC_NikE_OppD_transpor 99.3 3.4E-12 7.5E-17 128.1 6.3 145 33-180 1-178 (228)
141 PRK10247 putative ABC transpor 99.3 4.1E-12 8.9E-17 128.4 6.9 142 31-180 5-170 (225)
142 PRK13650 cbiO cobalt transport 99.3 2.9E-12 6.3E-17 133.9 5.9 145 32-180 3-173 (279)
143 PRK13641 cbiO cobalt transport 99.3 2.4E-12 5.2E-17 135.1 5.2 145 33-180 2-178 (287)
144 cd03246 ABCC_Protease_Secretio 99.3 2.7E-12 5.9E-17 124.6 5.2 120 35-180 2-129 (173)
145 PRK13631 cbiO cobalt transport 99.3 3.1E-12 6.7E-17 136.6 6.1 146 31-180 19-209 (320)
146 cd03256 ABC_PhnC_transporter A 99.3 3.5E-12 7.6E-17 129.3 6.1 139 35-180 2-177 (241)
147 PRK13647 cbiO cobalt transport 99.3 3E-12 6.6E-17 133.4 5.8 144 31-180 2-171 (274)
148 PRK11247 ssuB aliphatic sulfon 99.3 2.5E-12 5.5E-17 133.2 5.2 142 32-180 11-166 (257)
149 PRK10762 D-ribose transporter 99.3 3.8E-12 8.2E-17 143.1 7.0 142 32-180 3-174 (501)
150 PRK13539 cytochrome c biogenes 99.3 4.6E-12 9.9E-17 126.4 6.7 141 33-180 2-160 (207)
151 COG1137 YhbG ABC-type (unclass 99.3 5.5E-13 1.2E-17 132.6 0.1 159 33-205 4-190 (243)
152 cd03262 ABC_HisP_GlnQ_permease 99.3 3.9E-12 8.5E-17 126.6 6.0 139 35-180 2-168 (213)
153 TIGR03522 GldA_ABC_ATP gliding 99.3 4.3E-12 9.3E-17 134.1 6.6 141 33-180 2-166 (301)
154 cd03229 ABC_Class3 This class 99.3 2.9E-12 6.3E-17 124.9 4.9 121 36-180 3-133 (178)
155 cd03292 ABC_FtsE_transporter F 99.3 3E-12 6.4E-17 127.5 4.9 140 35-180 2-169 (214)
156 PRK13642 cbiO cobalt transport 99.3 3.6E-12 7.8E-17 133.0 5.7 145 32-180 3-173 (277)
157 PRK09700 D-allose transporter 99.3 4.8E-12 1E-16 142.5 6.9 142 32-180 4-178 (510)
158 PRK14267 phosphate ABC transpo 99.3 6.4E-12 1.4E-16 128.7 7.1 142 32-180 3-182 (253)
159 COG1117 PstB ABC-type phosphat 99.3 2E-12 4.3E-17 129.8 3.3 140 33-180 7-182 (253)
160 TIGR01189 ccmA heme ABC export 99.3 5.9E-12 1.3E-16 124.6 6.4 139 35-180 2-160 (198)
161 PRK14273 phosphate ABC transpo 99.3 4.6E-12 9.9E-17 130.0 5.8 143 30-180 4-183 (254)
162 PRK13633 cobalt transporter AT 99.3 6.2E-12 1.3E-16 131.4 6.8 147 31-180 2-177 (280)
163 TIGR03411 urea_trans_UrtD urea 99.3 6.9E-12 1.5E-16 127.5 6.9 141 33-180 2-176 (242)
164 cd03226 ABC_cobalt_CbiO_domain 99.3 4E-12 8.7E-17 126.2 5.0 128 50-180 13-159 (205)
165 PRK09984 phosphonate/organopho 99.3 6.5E-12 1.4E-16 129.6 6.8 142 32-180 3-185 (262)
166 PRK13652 cbiO cobalt transport 99.3 6.4E-12 1.4E-16 131.1 6.6 142 33-180 3-170 (277)
167 TIGR03410 urea_trans_UrtE urea 99.3 4.4E-12 9.6E-17 127.9 5.2 139 35-180 2-164 (230)
168 cd03301 ABC_MalK_N The N-termi 99.3 5.3E-12 1.2E-16 125.8 5.7 139 35-180 2-163 (213)
169 cd03263 ABC_subfamily_A The AB 99.3 3.4E-12 7.4E-17 127.8 4.3 141 35-180 2-166 (220)
170 cd07758 ThTPase Thiamine Triph 99.3 5.8E-11 1.3E-15 118.8 13.1 135 263-400 11-181 (196)
171 PRK14268 phosphate ABC transpo 99.2 5.4E-12 1.2E-16 130.0 5.7 141 32-180 11-187 (258)
172 PRK14272 phosphate ABC transpo 99.2 8.2E-12 1.8E-16 127.7 6.9 141 33-180 4-181 (252)
173 PRK10575 iron-hydroxamate tran 99.2 7.8E-12 1.7E-16 129.4 6.8 144 30-180 8-180 (265)
174 TIGR00152 dephospho-CoA kinase 99.2 1.2E-11 2.6E-16 121.6 7.8 163 68-244 1-180 (188)
175 cd03225 ABC_cobalt_CbiO_domain 99.2 5.9E-12 1.3E-16 125.3 5.5 128 50-180 14-167 (211)
176 PRK10261 glutathione transport 99.2 6.7E-12 1.4E-16 145.0 6.8 146 32-180 312-496 (623)
177 TIGR02324 CP_lyasePhnL phospho 99.2 9.3E-12 2E-16 125.1 7.0 145 33-180 1-182 (224)
178 PRK14248 phosphate ABC transpo 99.2 7.4E-12 1.6E-16 129.7 6.4 142 31-180 19-197 (268)
179 PRK14239 phosphate transporter 99.2 6.8E-12 1.5E-16 128.3 5.8 141 32-180 4-181 (252)
180 PRK14256 phosphate ABC transpo 99.2 1.1E-11 2.4E-16 127.0 7.3 143 31-180 2-181 (252)
181 COG0410 LivF ABC-type branched 99.2 4.4E-12 9.5E-17 128.6 4.2 140 32-178 2-167 (237)
182 cd03295 ABC_OpuCA_Osmoprotecti 99.2 8.1E-12 1.8E-16 127.3 6.1 139 35-180 2-168 (242)
183 PRK14235 phosphate transporter 99.2 1.1E-11 2.4E-16 128.5 7.2 142 31-180 17-196 (267)
184 PRK13639 cbiO cobalt transport 99.2 6.2E-12 1.4E-16 131.0 5.3 141 33-180 1-170 (275)
185 cd03294 ABC_Pro_Gly_Bertaine T 99.2 6.1E-12 1.3E-16 130.7 5.2 131 47-180 34-193 (269)
186 PRK10253 iron-enterobactin tra 99.2 9.3E-12 2E-16 128.9 6.4 143 31-180 5-176 (265)
187 PRK11231 fecE iron-dicitrate t 99.2 7.7E-12 1.7E-16 128.5 5.7 141 33-180 2-171 (255)
188 PRK13635 cbiO cobalt transport 99.2 6.8E-12 1.5E-16 131.2 5.4 144 32-180 4-173 (279)
189 TIGR00972 3a0107s01c2 phosphat 99.2 1.1E-11 2.4E-16 126.7 6.8 140 33-180 1-177 (247)
190 PRK13477 bifunctional pantoate 99.2 2.8E-11 6.1E-16 136.3 10.7 184 48-240 270-486 (512)
191 PRK13548 hmuV hemin importer A 99.2 1.1E-11 2.3E-16 128.1 6.7 141 33-180 2-173 (258)
192 PRK13648 cbiO cobalt transport 99.2 1.1E-11 2.3E-16 128.7 6.8 145 31-180 5-175 (269)
193 cd03231 ABC_CcmA_heme_exporter 99.2 8.5E-12 1.8E-16 124.0 5.7 139 35-180 2-158 (201)
194 PRK13636 cbiO cobalt transport 99.2 7.9E-12 1.7E-16 130.9 5.7 143 32-180 4-174 (283)
195 PRK14274 phosphate ABC transpo 99.2 1E-11 2.3E-16 127.8 6.5 142 31-180 10-188 (259)
196 TIGR03415 ABC_choXWV_ATP choli 99.2 4.1E-12 8.9E-17 138.8 3.6 132 46-180 33-197 (382)
197 PRK14262 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 126.9 6.4 140 33-180 3-179 (250)
198 PRK15112 antimicrobial peptide 99.2 9.1E-12 2E-16 129.2 5.9 146 32-180 3-182 (267)
199 PRK13638 cbiO cobalt transport 99.2 5.5E-12 1.2E-16 131.0 4.3 141 33-180 1-169 (271)
200 cd03235 ABC_Metallic_Cations A 99.2 6.9E-12 1.5E-16 125.1 4.8 137 37-180 3-165 (213)
201 COG2274 SunT ABC-type bacterio 99.2 2.8E-12 6E-17 149.5 2.2 163 12-180 443-642 (709)
202 KOG3220 Similar to bacterial d 99.2 1.3E-11 2.8E-16 122.7 6.4 165 66-244 1-182 (225)
203 PRK14249 phosphate ABC transpo 99.2 1.3E-11 2.8E-16 126.5 6.7 142 31-180 2-180 (251)
204 cd03213 ABCG_EPDR ABCG transpo 99.2 1E-11 2.2E-16 122.9 5.8 132 34-180 4-144 (194)
205 PRK13649 cbiO cobalt transport 99.2 8.1E-12 1.8E-16 130.2 5.1 143 34-180 3-178 (280)
206 TIGR01978 sufC FeS assembly AT 99.2 1.3E-11 2.9E-16 125.2 6.4 139 35-180 2-177 (243)
207 PRK14270 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 126.4 6.5 141 32-180 3-180 (251)
208 PRK14238 phosphate transporter 99.2 1.5E-11 3.2E-16 128.0 6.8 149 24-180 15-200 (271)
209 TIGR03873 F420-0_ABC_ATP propo 99.2 1.4E-11 3.1E-16 126.6 6.6 139 35-180 3-170 (256)
210 TIGR02142 modC_ABC molybdenum 99.2 1.3E-11 2.9E-16 133.4 6.5 123 55-180 15-164 (354)
211 PRK14253 phosphate ABC transpo 99.2 1.4E-11 3E-16 125.9 6.3 140 33-180 3-178 (249)
212 TIGR03740 galliderm_ABC gallid 99.2 1.4E-11 3.1E-16 123.8 6.3 139 35-180 2-157 (223)
213 PRK10744 pstB phosphate transp 99.2 1.1E-11 2.5E-16 127.8 5.7 142 31-180 11-189 (260)
214 PRK14240 phosphate transporter 99.2 1.5E-11 3.2E-16 125.8 6.4 140 33-180 3-179 (250)
215 TIGR02769 nickel_nikE nickel i 99.2 1.5E-11 3.2E-16 127.3 6.4 145 33-180 2-183 (265)
216 COG1132 MdlB ABC-type multidru 99.2 2.2E-12 4.9E-17 146.9 0.3 165 8-180 298-498 (567)
217 PRK14255 phosphate ABC transpo 99.2 2.1E-11 4.5E-16 124.9 7.2 141 32-180 4-181 (252)
218 COG1129 MglA ABC-type sugar tr 99.2 5.3E-12 1.1E-16 140.8 3.0 171 31-215 6-206 (500)
219 TIGR03269 met_CoM_red_A2 methy 99.2 1.3E-11 2.8E-16 139.4 6.1 147 31-180 277-460 (520)
220 PRK13644 cbiO cobalt transport 99.2 1E-11 2.2E-16 129.5 4.8 142 33-180 1-169 (274)
221 cd03300 ABC_PotA_N PotA is an 99.2 1.4E-11 3E-16 124.9 5.5 138 36-180 3-163 (232)
222 PRK11288 araG L-arabinose tran 99.2 1.7E-11 3.7E-16 137.9 6.7 142 32-180 3-173 (501)
223 PRK14261 phosphate ABC transpo 99.2 2.9E-11 6.2E-16 124.1 7.7 142 31-180 4-182 (253)
224 TIGR03005 ectoine_ehuA ectoine 99.2 1.8E-11 4E-16 125.4 6.2 139 35-180 2-179 (252)
225 PRK15134 microcin C ABC transp 99.2 1E-11 2.2E-16 140.6 4.6 147 31-180 273-458 (529)
226 PRK14269 phosphate ABC transpo 99.2 1.7E-11 3.6E-16 125.4 5.7 140 33-180 2-175 (246)
227 TIGR01166 cbiO cobalt transpor 99.2 1.2E-11 2.5E-16 121.5 4.3 128 49-180 4-160 (190)
228 PRK15134 microcin C ABC transp 99.2 2.5E-11 5.4E-16 137.4 7.5 146 32-180 4-189 (529)
229 PRK14241 phosphate transporter 99.2 3E-11 6.5E-16 124.4 7.4 142 32-180 3-181 (258)
230 COG1123 ATPase components of v 99.2 5.1E-11 1.1E-15 134.0 9.8 206 32-273 4-247 (539)
231 PRK13632 cbiO cobalt transport 99.2 1.7E-11 3.6E-16 127.5 5.5 145 31-180 5-175 (271)
232 cd03217 ABC_FeS_Assembly ABC-t 99.2 2.1E-11 4.5E-16 121.2 5.8 125 35-180 2-137 (200)
233 PRK09544 znuC high-affinity zi 99.2 3E-11 6.5E-16 124.6 7.1 138 32-180 3-153 (251)
234 PRK11701 phnK phosphonate C-P 99.2 2.7E-11 5.8E-16 124.8 6.7 143 31-180 4-184 (258)
235 PRK13549 xylose transporter AT 99.2 2.4E-11 5.3E-16 136.8 6.9 142 32-180 4-176 (506)
236 cd03247 ABCC_cytochrome_bd The 99.2 1E-11 2.2E-16 120.9 3.1 123 35-180 2-131 (178)
237 PRK10938 putative molybdenum t 99.2 2.6E-11 5.6E-16 135.9 6.6 140 33-180 3-168 (490)
238 cd03264 ABC_drug_resistance_li 99.2 2.2E-11 4.8E-16 121.3 5.4 138 35-180 2-163 (211)
239 PRK14265 phosphate ABC transpo 99.2 3.2E-11 6.9E-16 125.8 6.8 142 31-180 18-194 (274)
240 TIGR02982 heterocyst_DevA ABC 99.2 2.2E-11 4.8E-16 122.4 5.4 144 34-180 2-174 (220)
241 PRK14244 phosphate ABC transpo 99.2 2.8E-11 6E-16 124.0 6.0 138 35-180 7-182 (251)
242 COG4172 ABC-type uncharacteriz 99.2 2.2E-11 4.8E-16 131.4 5.4 207 33-275 276-521 (534)
243 PRK13645 cbiO cobalt transport 99.2 2.3E-11 5E-16 127.5 5.5 145 32-180 5-183 (289)
244 PRK14245 phosphate ABC transpo 99.2 3.6E-11 7.8E-16 123.1 6.7 141 32-180 2-179 (250)
245 PRK13541 cytochrome c biogenes 99.2 4.3E-11 9.3E-16 118.3 7.0 140 33-180 1-156 (195)
246 cd03228 ABCC_MRP_Like The MRP 99.2 1.5E-11 3.2E-16 119.3 3.4 120 35-180 2-129 (171)
247 PRK13640 cbiO cobalt transport 99.2 2.3E-11 5E-16 127.3 5.0 145 31-180 3-176 (282)
248 COG4619 ABC-type uncharacteriz 99.2 9.6E-12 2.1E-16 121.0 1.9 80 45-128 11-98 (223)
249 COG4604 CeuD ABC-type enteroch 99.2 1.3E-10 2.9E-15 115.7 9.9 164 33-214 1-196 (252)
250 TIGR02633 xylG D-xylose ABC tr 99.2 3.6E-11 7.8E-16 135.0 6.8 160 34-207 2-194 (500)
251 cd03223 ABCD_peroxisomal_ALDP 99.2 2E-11 4.4E-16 118.1 4.1 121 36-180 3-124 (166)
252 cd03234 ABCG_White The White s 99.2 2.6E-11 5.7E-16 122.3 5.0 144 34-180 4-176 (226)
253 TIGR00968 3a0106s01 sulfate AB 99.2 3.6E-11 7.8E-16 122.4 5.9 139 35-180 2-163 (237)
254 PRK14259 phosphate ABC transpo 99.1 3.8E-11 8.3E-16 124.8 6.2 142 31-180 11-187 (269)
255 COG0237 CoaE Dephospho-CoA kin 99.1 5.1E-11 1.1E-15 119.7 6.8 162 66-244 2-180 (201)
256 COG4175 ProV ABC-type proline/ 99.1 2.6E-11 5.7E-16 127.6 4.8 130 48-180 39-197 (386)
257 cd03260 ABC_PstB_phosphate_tra 99.1 4E-11 8.7E-16 120.8 5.9 138 35-180 2-174 (227)
258 PRK13549 xylose transporter AT 99.1 4E-11 8.7E-16 135.0 6.5 166 31-207 257-458 (506)
259 TIGR02868 CydC thiol reductant 99.1 1.8E-11 3.9E-16 138.2 3.6 165 9-180 301-503 (529)
260 PRK14237 phosphate transporter 99.1 4.2E-11 9.1E-16 124.2 6.0 145 28-180 15-196 (267)
261 cd03252 ABCC_Hemolysin The ABC 99.1 3E-11 6.5E-16 122.5 4.7 140 35-180 2-171 (237)
262 cd03248 ABCC_TAP TAP, the Tran 99.1 3.7E-11 8.1E-16 120.9 5.3 145 31-180 9-183 (226)
263 PRK14236 phosphate transporter 99.1 8.5E-11 1.8E-15 122.3 8.1 142 31-180 23-201 (272)
264 KOG0055 Multidrug/pheromone ex 99.1 8.7E-12 1.9E-16 149.3 0.8 174 2-180 948-1159(1228)
265 CHL00131 ycf16 sulfate ABC tra 99.1 5.4E-11 1.2E-15 121.7 6.5 143 31-180 5-184 (252)
266 PRK11819 putative ABC transpor 99.1 3.3E-11 7.1E-16 137.4 5.3 139 32-180 5-196 (556)
267 PRK10771 thiQ thiamine transpo 99.1 4.3E-11 9.3E-16 121.2 5.6 139 33-180 1-162 (232)
268 KOG0055 Multidrug/pheromone ex 99.1 1.2E-11 2.5E-16 148.3 1.5 195 7-214 316-548 (1228)
269 cd03251 ABCC_MsbA MsbA is an e 99.1 4.2E-11 9.1E-16 121.0 5.3 140 35-180 2-171 (234)
270 PRK09700 D-allose transporter 99.1 5.4E-11 1.2E-15 134.1 6.6 140 32-180 264-442 (510)
271 PRK10982 galactose/methyl gala 99.1 4.4E-11 9.6E-16 134.1 5.9 130 48-180 9-167 (491)
272 cd03298 ABC_ThiQ_thiamine_tran 99.1 4.4E-11 9.5E-16 119.2 5.2 137 35-180 2-161 (211)
273 PRK15064 ABC transporter ATP-b 99.1 3.6E-11 7.8E-16 136.2 5.0 137 33-180 1-188 (530)
274 cd03297 ABC_ModC_molybdenum_tr 99.1 4.8E-11 1E-15 119.3 5.2 129 46-180 9-164 (214)
275 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 4.3E-11 9.4E-16 121.4 4.9 141 35-180 2-172 (238)
276 PRK14251 phosphate ABC transpo 99.1 5.5E-11 1.2E-15 121.7 5.6 141 32-180 3-180 (251)
277 COG3845 ABC-type uncharacteriz 99.1 2.5E-11 5.3E-16 133.9 3.0 91 32-129 3-102 (501)
278 KOG2702 Predicted panthothenat 99.1 1.1E-10 2.3E-15 118.3 7.3 169 67-237 120-318 (323)
279 PRK10419 nikE nickel transport 99.1 7.2E-11 1.6E-15 122.7 6.3 145 33-180 3-184 (268)
280 TIGR02323 CP_lyasePhnK phospho 99.1 5.8E-11 1.3E-15 121.7 5.4 141 33-180 3-181 (253)
281 cd03369 ABCC_NFT1 Domain 2 of 99.1 3.4E-11 7.3E-16 119.8 3.6 143 32-180 5-158 (207)
282 PRK14271 phosphate ABC transpo 99.1 1E-10 2.2E-15 122.2 7.2 142 31-180 19-196 (276)
283 PRK14275 phosphate ABC transpo 99.1 7.6E-11 1.6E-15 123.8 6.2 142 31-180 37-215 (286)
284 PRK14254 phosphate ABC transpo 99.1 9.7E-11 2.1E-15 123.0 7.0 141 32-180 38-213 (285)
285 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 2.6E-11 5.7E-16 141.2 2.9 165 10-180 423-621 (686)
286 TIGR01277 thiQ thiamine ABC tr 99.1 8.4E-11 1.8E-15 117.6 6.0 137 35-180 2-161 (213)
287 cd03254 ABCC_Glucan_exporter_l 99.1 4.2E-11 9.1E-16 120.7 3.8 140 34-180 3-172 (229)
288 cd02020 CMPK Cytidine monophos 99.1 5.8E-10 1.3E-14 103.6 11.2 143 68-238 1-145 (147)
289 PRK14243 phosphate transporter 99.1 8.4E-11 1.8E-15 121.8 6.1 141 32-180 9-184 (264)
290 cd03267 ABC_NatA_like Similar 99.1 6.5E-11 1.4E-15 120.6 5.1 133 45-180 29-186 (236)
291 PRK15056 manganese/iron transp 99.1 1.2E-10 2.6E-15 121.2 7.2 141 33-180 6-175 (272)
292 TIGR01257 rim_protein retinal- 99.1 5.6E-11 1.2E-15 150.7 5.4 145 31-180 1935-2103(2272)
293 PRK14257 phosphate ABC transpo 99.1 7.9E-11 1.7E-15 126.4 5.7 144 31-180 78-258 (329)
294 PRK10418 nikD nickel transport 99.1 1E-10 2.2E-15 120.3 6.3 141 32-180 3-173 (254)
295 cd03245 ABCC_bacteriocin_expor 99.1 5E-11 1.1E-15 119.4 3.7 141 34-180 3-173 (220)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 6.1E-11 1.3E-15 135.1 5.0 139 32-180 3-194 (552)
297 TIGR03269 met_CoM_red_A2 methy 99.1 9.1E-11 2E-15 132.5 6.1 139 35-180 2-201 (520)
298 PRK15064 ABC transporter ATP-b 99.1 8.3E-11 1.8E-15 133.2 5.7 138 32-180 318-471 (530)
299 KOG3308 Uncharacterized protei 99.1 6.5E-11 1.4E-15 117.8 4.1 170 65-240 3-187 (225)
300 TIGR03796 NHPM_micro_ABC1 NHPM 99.1 2.4E-11 5.1E-16 142.1 1.2 142 33-180 477-648 (710)
301 COG3840 ThiQ ABC-type thiamine 99.1 7.1E-11 1.5E-15 116.4 4.3 123 55-180 17-162 (231)
302 COG4618 ArpD ABC-type protease 99.1 1.4E-10 2.9E-15 128.3 6.6 185 11-208 308-526 (580)
303 PRK14258 phosphate ABC transpo 99.1 1.2E-10 2.7E-15 120.3 6.0 141 32-180 6-183 (261)
304 cd03299 ABC_ModC_like Archeal 99.1 1.3E-10 2.8E-15 118.2 5.9 126 52-180 14-162 (235)
305 cd03289 ABCC_CFTR2 The CFTR su 99.1 8.4E-11 1.8E-15 123.2 4.6 89 34-128 3-98 (275)
306 PRK09580 sufC cysteine desulfu 99.1 1.9E-10 4.1E-15 117.3 6.8 141 33-180 1-178 (248)
307 PRK10535 macrolide transporter 99.1 1.7E-10 3.7E-15 134.0 7.3 146 32-180 3-177 (648)
308 cd03253 ABCC_ATM1_transporter 99.1 1.3E-10 2.7E-15 117.7 5.4 138 36-180 3-170 (236)
309 cd03216 ABC_Carb_Monos_I This 99.1 1.2E-10 2.6E-15 112.4 4.9 61 35-102 2-63 (163)
310 cd03244 ABCC_MRP_domain2 Domai 99.1 6.4E-11 1.4E-15 118.7 3.1 141 34-180 3-172 (221)
311 PRK14266 phosphate ABC transpo 99.1 2.3E-10 5E-15 117.0 7.2 140 33-180 3-179 (250)
312 cd03250 ABCC_MRP_domain1 Domai 99.1 5E-11 1.1E-15 118.3 2.2 136 35-180 2-160 (204)
313 TIGR01184 ntrCD nitrate transp 99.1 9.7E-11 2.1E-15 118.9 4.2 125 53-180 1-147 (230)
314 PRK10789 putative multidrug tr 99.1 5.2E-11 1.1E-15 136.1 2.3 166 9-180 284-484 (569)
315 PRK11160 cysteine/glutathione 99.1 4.1E-11 8.9E-16 137.1 1.5 167 8-180 307-508 (574)
316 TIGR02770 nickel_nikD nickel i 99.1 5.3E-11 1.1E-15 120.5 2.1 126 52-180 1-158 (230)
317 COG4167 SapF ABC-type antimicr 99.1 7.4E-11 1.6E-15 116.2 3.0 167 32-207 3-203 (267)
318 PRK14264 phosphate ABC transpo 99.0 2.7E-10 5.9E-15 120.7 7.4 141 32-180 44-233 (305)
319 cd03290 ABCC_SUR1_N The SUR do 99.0 1.3E-10 2.9E-15 116.4 4.8 127 50-180 14-173 (218)
320 TIGR01842 type_I_sec_PrtD type 99.0 5.2E-11 1.1E-15 135.2 2.0 166 9-180 288-487 (544)
321 PRK03695 vitamin B12-transport 99.0 1.2E-10 2.6E-15 119.6 4.4 75 52-129 11-92 (248)
322 PRK10762 D-ribose transporter 99.0 2E-10 4.4E-15 129.2 6.7 136 33-180 257-428 (501)
323 PRK11174 cysteine/glutathione 99.0 7.9E-11 1.7E-15 134.6 3.2 166 8-180 317-518 (588)
324 TIGR02633 xylG D-xylose ABC tr 99.0 2E-10 4.3E-15 129.1 6.3 145 32-180 256-436 (500)
325 TIGR00958 3a01208 Conjugate Tr 99.0 7.2E-11 1.6E-15 138.4 2.8 167 9-180 448-650 (711)
326 PTZ00265 multidrug resistance 99.0 7E-11 1.5E-15 147.7 2.8 196 7-214 1128-1419(1466)
327 PRK10790 putative multidrug tr 99.0 8.8E-11 1.9E-15 134.5 3.3 165 9-180 312-509 (592)
328 PRK13546 teichoic acids export 99.0 3.4E-10 7.4E-15 117.8 7.2 124 48-180 35-176 (264)
329 COG1134 TagH ABC-type polysacc 99.0 5.8E-10 1.3E-14 114.2 8.4 122 46-171 36-178 (249)
330 cd03214 ABC_Iron-Siderophores_ 99.0 1.6E-10 3.4E-15 113.0 4.1 112 49-180 11-130 (180)
331 PRK14260 phosphate ABC transpo 99.0 2.4E-10 5.2E-15 117.9 5.7 140 33-180 7-183 (259)
332 PRK14246 phosphate ABC transpo 99.0 1.8E-10 3.9E-15 119.1 4.4 143 31-180 8-186 (257)
333 TIGR03375 type_I_sec_LssB type 99.0 1.2E-10 2.6E-15 135.9 3.5 166 9-180 432-634 (694)
334 KOG0057 Mitochondrial Fe/S clu 99.0 3.8E-10 8.3E-15 125.8 7.1 140 34-180 352-520 (591)
335 TIGR02857 CydD thiol reductant 99.0 1.2E-10 2.6E-15 131.5 2.9 166 9-180 291-491 (529)
336 COG0396 sufC Cysteine desulfur 99.0 9.9E-11 2.1E-15 118.8 1.6 163 32-207 2-197 (251)
337 PRK15439 autoinducer 2 ABC tra 99.0 4.7E-10 1E-14 126.7 7.1 137 32-180 267-436 (510)
338 PTZ00265 multidrug resistance 99.0 9E-11 1.9E-15 146.8 1.4 117 8-129 351-482 (1466)
339 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 6.2E-10 1.3E-14 112.7 7.0 127 46-180 31-175 (224)
340 PRK10522 multidrug transporter 99.0 1.4E-10 3E-15 131.9 2.5 141 33-180 322-482 (547)
341 PRK13547 hmuV hemin importer A 99.0 9.5E-10 2.1E-14 115.0 8.1 90 33-129 1-106 (272)
342 PRK10982 galactose/methyl gala 99.0 7E-10 1.5E-14 124.5 7.4 140 32-180 249-424 (491)
343 COG4172 ABC-type uncharacteriz 99.0 2.5E-09 5.4E-14 115.9 11.1 148 31-181 4-191 (534)
344 COG4674 Uncharacterized ABC-ty 99.0 7.3E-10 1.6E-14 110.3 6.5 92 33-131 5-106 (249)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 4E-10 8.7E-15 128.4 5.4 138 32-180 321-476 (552)
346 TIGR00017 cmk cytidylate kinas 99.0 1.4E-09 3.1E-14 110.4 8.8 82 159-241 120-202 (217)
347 TIGR01193 bacteriocin_ABC ABC- 99.0 2.8E-10 6.1E-15 133.1 3.8 164 10-180 443-644 (708)
348 KOG0056 Heavy metal exporter H 99.0 1.9E-10 4.2E-15 126.3 2.2 163 11-180 508-707 (790)
349 PRK11819 putative ABC transpor 99.0 4.9E-10 1.1E-14 127.9 5.4 138 32-180 323-478 (556)
350 PRK11288 araG L-arabinose tran 99.0 4.9E-10 1.1E-14 126.1 5.4 127 51-180 267-429 (501)
351 COG4559 ABC-type hemin transpo 99.0 1E-09 2.3E-14 110.4 6.8 87 34-128 2-97 (259)
352 cd03222 ABC_RNaseL_inhibitor T 99.0 6.1E-10 1.3E-14 109.8 5.1 96 45-180 8-104 (177)
353 cd03288 ABCC_SUR2 The SUR doma 98.9 4.7E-10 1E-14 115.7 4.3 143 32-180 18-189 (257)
354 COG4148 ModC ABC-type molybdat 98.9 1.8E-10 3.9E-15 119.7 1.2 123 55-180 16-161 (352)
355 PRK11147 ABC transporter ATPas 98.9 6.2E-10 1.3E-14 129.1 5.5 139 31-180 317-473 (635)
356 PLN03232 ABC transporter C fam 98.9 1.1E-10 2.5E-15 146.4 -0.6 167 8-180 1199-1404(1495)
357 COG4778 PhnL ABC-type phosphon 98.9 1.9E-09 4.2E-14 105.3 8.0 167 31-207 2-205 (235)
358 PLN03211 ABC transporter G-25; 98.9 7.3E-10 1.6E-14 129.0 6.0 130 48-180 79-239 (659)
359 COG4988 CydD ABC-type transpor 98.9 4.4E-10 9.6E-15 126.3 3.8 168 8-180 287-489 (559)
360 PRK14252 phosphate ABC transpo 98.9 2.7E-09 5.9E-14 110.5 9.3 91 31-129 14-121 (265)
361 TIGR01257 rim_protein retinal- 98.9 7.6E-10 1.6E-14 140.7 6.1 144 32-180 927-1094(2272)
362 TIGR01194 cyc_pep_trnsptr cycl 98.9 3.9E-10 8.3E-15 128.7 3.2 143 33-180 337-503 (555)
363 PRK10938 putative molybdenum t 98.9 9E-10 1.9E-14 123.5 5.7 143 31-180 258-434 (490)
364 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 5.8E-10 1.3E-14 105.7 3.6 57 50-113 13-70 (144)
365 COG0283 Cmk Cytidylate kinase 98.9 3.6E-09 7.8E-14 106.7 9.3 81 160-241 121-202 (222)
366 PRK11176 lipid transporter ATP 98.9 4.7E-10 1E-14 128.1 3.2 142 33-180 341-513 (582)
367 PLN03130 ABC transporter C fam 98.9 2.1E-10 4.6E-15 144.7 0.4 166 9-180 1203-1407(1622)
368 PRK13409 putative ATPase RIL; 98.9 1.4E-09 3.1E-14 125.2 7.0 136 31-180 338-486 (590)
369 TIGR02204 MsbA_rel ABC transpo 98.9 4.7E-10 1E-14 127.9 2.8 143 33-180 337-509 (576)
370 TIGR02203 MsbA_lipidA lipid A 98.9 5.1E-10 1.1E-14 127.3 3.0 165 10-180 302-502 (571)
371 PRK13545 tagH teichoic acids e 98.9 1E-09 2.2E-14 124.0 5.2 138 32-180 20-176 (549)
372 TIGR01192 chvA glucan exporter 98.9 4.7E-10 1E-14 128.8 2.5 141 33-180 334-504 (585)
373 PRK10636 putative ABC transpor 98.9 1.2E-09 2.5E-14 127.0 5.5 141 33-180 1-182 (638)
374 PRK10636 putative ABC transpor 98.9 1.3E-09 2.9E-14 126.5 5.5 139 31-180 310-463 (638)
375 PRK13657 cyclic beta-1,2-gluca 98.9 8.7E-10 1.9E-14 126.3 3.8 141 33-180 334-504 (588)
376 COG4136 ABC-type uncharacteriz 98.9 4E-10 8.6E-15 108.2 0.8 130 48-180 13-167 (213)
377 cd03291 ABCC_CFTR1 The CFTR su 98.9 8.6E-10 1.9E-14 116.1 3.2 132 33-180 39-192 (282)
378 cd03237 ABC_RNaseL_inhibitor_d 98.9 1E-09 2.2E-14 113.1 3.6 120 53-180 15-148 (246)
379 TIGR00954 3a01203 Peroxysomal 98.9 7.2E-10 1.6E-14 129.1 2.7 138 32-180 450-615 (659)
380 TIGR00957 MRP_assoc_pro multi 98.9 3.9E-10 8.4E-15 141.9 0.3 167 8-180 1249-1454(1522)
381 COG4133 CcmA ABC-type transpor 98.9 9.7E-10 2.1E-14 108.8 3.0 137 41-180 6-163 (209)
382 TIGR00956 3a01205 Pleiotropic 98.9 3E-09 6.6E-14 132.9 7.7 170 33-212 759-960 (1394)
383 PRK15177 Vi polysaccharide exp 98.9 1.2E-09 2.6E-14 110.0 3.1 120 52-180 2-137 (213)
384 PRK14263 phosphate ABC transpo 98.8 6.4E-09 1.4E-13 107.8 8.4 78 48-129 19-111 (261)
385 cd00267 ABC_ATPase ABC (ATP-bi 98.8 2.8E-09 6.1E-14 101.6 4.8 50 50-102 12-62 (157)
386 COG4161 ArtP ABC-type arginine 98.8 2.9E-09 6.3E-14 103.4 4.8 153 44-206 9-193 (242)
387 COG4987 CydC ABC-type transpor 98.8 1.2E-09 2.6E-14 121.8 2.4 167 8-180 306-507 (573)
388 TIGR01846 type_I_sec_HlyB type 98.8 1.6E-09 3.4E-14 126.7 3.5 165 10-180 426-626 (694)
389 COG0488 Uup ATPase components 98.8 2.8E-09 6.1E-14 121.0 5.2 137 33-180 3-186 (530)
390 COG4107 PhnK ABC-type phosphon 98.8 3.8E-09 8.1E-14 103.7 5.1 143 32-181 5-185 (258)
391 TIGR03771 anch_rpt_ABC anchore 98.8 3.2E-09 6.8E-14 107.4 4.7 120 58-180 1-146 (223)
392 cd03236 ABC_RNaseL_inhibitor_d 98.8 2.5E-09 5.4E-14 111.0 3.4 125 51-180 15-172 (255)
393 cd03238 ABC_UvrA The excision 98.8 3.2E-09 6.9E-14 104.6 3.4 112 49-180 7-122 (176)
394 PRK08118 topology modulation p 98.8 5.5E-08 1.2E-12 94.8 11.8 105 68-207 3-108 (167)
395 PRK07261 topology modulation p 98.8 1.3E-08 2.8E-13 99.4 7.2 112 68-214 2-115 (171)
396 PF13207 AAA_17: AAA domain; P 98.8 7.6E-09 1.7E-13 93.6 5.1 117 68-207 1-119 (121)
397 PF00005 ABC_tran: ABC transpo 98.8 3.1E-09 6.8E-14 98.2 2.6 71 53-126 1-79 (137)
398 TIGR00955 3a01204 The Eye Pigm 98.8 6.7E-09 1.4E-13 120.2 5.6 131 47-180 35-199 (617)
399 PRK11147 ABC transporter ATPas 98.8 4E-09 8.7E-14 122.3 3.8 61 33-100 3-64 (635)
400 PRK01184 hypothetical protein; 98.7 2.1E-08 4.5E-13 97.9 7.3 160 66-243 1-165 (184)
401 PRK09518 bifunctional cytidyla 98.7 8.5E-08 1.8E-12 112.9 13.6 76 161-241 139-214 (712)
402 PLN03073 ABC transporter F fam 98.7 1E-08 2.2E-13 120.5 5.9 137 32-180 507-660 (718)
403 COG1101 PhnK ABC-type uncharac 98.7 7.5E-09 1.6E-13 104.6 3.7 94 33-129 1-105 (263)
404 TIGR01187 potA spermidine/putr 98.7 4.3E-09 9.4E-14 112.7 1.5 110 71-180 1-133 (325)
405 PRK00023 cmk cytidylate kinase 98.7 2.7E-08 6E-13 101.4 7.0 82 159-241 122-204 (225)
406 PRK11860 bifunctional 3-phosph 98.7 5.8E-08 1.3E-12 113.4 10.0 168 66-241 442-638 (661)
407 PRK06217 hypothetical protein; 98.7 7.8E-08 1.7E-12 94.4 9.2 105 67-201 2-107 (183)
408 PRK13409 putative ATPase RIL; 98.7 1E-08 2.3E-13 118.1 3.4 143 33-180 65-245 (590)
409 PTZ00243 ABC transporter; Prov 98.7 2.4E-08 5.3E-13 126.1 6.9 91 33-129 1308-1406(1560)
410 PRK14737 gmk guanylate kinase; 98.7 1.5E-07 3.3E-12 93.4 11.2 160 65-243 3-171 (186)
411 COG1102 Cmk Cytidylate kinase 98.6 1.3E-08 2.7E-13 98.7 2.9 146 68-239 2-154 (179)
412 PLN03140 ABC transporter G fam 98.6 4E-08 8.8E-13 123.2 8.1 78 49-129 177-262 (1470)
413 COG4586 ABC-type uncharacteriz 98.6 1.8E-08 3.9E-13 104.8 2.7 57 45-104 32-89 (325)
414 COG5265 ATM1 ABC-type transpor 98.6 2.5E-08 5.3E-13 108.8 3.1 165 11-180 232-432 (497)
415 cd07891 CYTH-like_CthTTM-like_ 98.6 2.9E-07 6.2E-12 88.5 9.8 84 296-385 34-120 (148)
416 PRK06762 hypothetical protein; 98.6 5.2E-07 1.1E-11 86.6 11.4 122 66-216 2-133 (166)
417 PLN03140 ABC transporter G fam 98.6 4.3E-08 9.4E-13 122.9 5.1 130 48-180 891-1052(1470)
418 KOG0061 Transporter, ABC super 98.6 1.7E-08 3.7E-13 116.8 1.2 165 49-223 42-239 (613)
419 TIGR01271 CFTR_protein cystic 98.5 9E-08 2E-12 120.7 7.3 142 33-180 1217-1386(1490)
420 TIGR02173 cyt_kin_arch cytidyl 98.5 2.4E-07 5.2E-12 88.5 8.5 147 68-240 2-156 (171)
421 PLN03232 ABC transporter C fam 98.5 3.6E-08 7.7E-13 124.3 3.4 163 8-180 584-773 (1495)
422 TIGR00956 3a01205 Pleiotropic 98.5 8.1E-08 1.7E-12 120.3 6.3 130 48-180 72-242 (1394)
423 PLN03130 ABC transporter C fam 98.5 4.6E-08 1E-12 123.9 4.0 162 8-180 584-773 (1622)
424 PRK10078 ribose 1,5-bisphospho 98.5 5E-07 1.1E-11 88.9 10.4 23 68-90 4-26 (186)
425 TIGR00957 MRP_assoc_pro multi 98.5 7.6E-08 1.7E-12 121.6 5.1 160 9-180 604-793 (1522)
426 TIGR02322 phosphon_PhnN phosph 98.5 9.1E-07 2E-11 85.9 11.5 24 68-91 3-26 (179)
427 COG0488 Uup ATPase components 98.5 8.6E-08 1.9E-12 109.0 4.5 135 31-180 319-472 (530)
428 PRK04182 cytidylate kinase; Pr 98.5 6E-07 1.3E-11 86.3 9.3 148 68-241 2-157 (180)
429 PLN03073 ABC transporter F fam 98.5 6.7E-08 1.4E-12 113.8 2.8 60 31-97 175-238 (718)
430 TIGR01271 CFTR_protein cystic 98.5 8.4E-08 1.8E-12 120.9 3.8 121 50-180 439-581 (1490)
431 PRK12269 bifunctional cytidyla 98.5 8.2E-07 1.8E-11 106.0 11.6 79 160-241 190-268 (863)
432 TIGR03263 guanyl_kin guanylate 98.4 9.2E-07 2E-11 85.7 9.8 25 68-92 3-27 (180)
433 KOG0059 Lipid exporter ABCA1 a 98.4 2.3E-07 4.9E-12 111.7 5.2 93 33-131 564-665 (885)
434 COG3954 PrkB Phosphoribulokina 98.4 1.2E-06 2.6E-11 87.2 9.3 170 66-237 5-205 (289)
435 PRK05541 adenylylsulfate kinas 98.4 6.5E-07 1.4E-11 87.0 6.9 36 65-100 6-43 (176)
436 KOG0054 Multidrug resistance-a 98.4 1.6E-07 3.4E-12 115.6 3.1 108 7-119 1102-1227(1381)
437 COG0194 Gmk Guanylate kinase [ 98.3 3.1E-06 6.7E-11 84.1 10.7 155 67-240 5-167 (191)
438 PRK00300 gmk guanylate kinase; 98.3 2.7E-06 5.8E-11 84.3 10.3 28 61-91 3-30 (205)
439 PTZ00243 ABC transporter; Prov 98.3 2.6E-07 5.6E-12 116.9 3.6 122 49-180 672-815 (1560)
440 cd02019 NK Nucleoside/nucleoti 98.3 1.3E-06 2.9E-11 72.9 6.2 26 161-186 34-63 (69)
441 PRK08356 hypothetical protein; 98.3 8E-07 1.7E-11 88.2 5.5 34 66-101 5-38 (195)
442 COG4240 Predicted kinase [Gene 98.3 1.4E-06 3E-11 88.9 7.1 109 62-171 46-175 (300)
443 cd00820 PEPCK_HprK Phosphoenol 98.3 1E-06 2.2E-11 80.5 5.5 69 50-129 2-77 (107)
444 PRK04040 adenylate kinase; Pro 98.3 1.3E-06 2.8E-11 87.0 6.5 36 66-101 2-38 (188)
445 TIGR01360 aden_kin_iso1 adenyl 98.3 2.1E-06 4.6E-11 83.2 7.8 111 67-199 4-128 (188)
446 COG1119 ModF ABC-type molybden 98.2 2.2E-06 4.9E-11 88.3 6.4 62 33-101 31-93 (257)
447 COG4615 PvdE ABC-type sideroph 98.2 5.6E-07 1.2E-11 97.7 2.1 65 33-103 322-387 (546)
448 KOG2878 Predicted kinase [Gene 98.1 1.9E-05 4.2E-10 79.3 10.8 160 66-226 31-253 (282)
449 COG4138 BtuD ABC-type cobalami 98.1 2.3E-06 4.9E-11 84.6 3.8 46 53-101 15-60 (248)
450 PF00625 Guanylate_kin: Guanyl 98.0 1.7E-05 3.8E-10 77.7 9.0 157 66-240 2-167 (183)
451 smart00072 GuKc Guanylate kina 98.0 6.3E-05 1.4E-09 74.0 12.0 156 67-240 3-167 (184)
452 PLN02200 adenylate kinase fami 98.0 1.1E-05 2.3E-10 83.1 6.7 37 64-101 41-77 (234)
453 KOG0065 Pleiotropic drug resis 98.0 8.3E-06 1.8E-10 99.3 6.5 94 32-128 786-886 (1391)
454 cd01130 VirB11-like_ATPase Typ 98.0 9.7E-05 2.1E-09 72.9 12.5 45 54-101 16-61 (186)
455 COG4170 SapD ABC-type antimicr 97.9 3.6E-05 7.8E-10 78.1 9.0 82 33-117 3-100 (330)
456 PRK05057 aroK shikimate kinase 97.9 1.6E-05 3.5E-10 77.8 6.5 33 68-101 6-38 (172)
457 PF13238 AAA_18: AAA domain; P 97.9 2.6E-06 5.7E-11 76.8 0.5 22 69-90 1-22 (129)
458 cd07761 CYTH-like_CthTTM-like 97.9 5.3E-05 1.1E-09 72.7 9.1 89 282-384 26-117 (146)
459 PRK13949 shikimate kinase; Pro 97.9 7.6E-06 1.6E-10 80.0 3.3 33 68-101 3-35 (169)
460 TIGR03238 dnd_assoc_3 dnd syst 97.9 7.5E-06 1.6E-10 91.7 3.2 48 50-102 19-68 (504)
461 COG4178 ABC-type uncharacteriz 97.9 9.4E-06 2E-10 93.1 3.9 144 31-180 390-548 (604)
462 cd03278 ABC_SMC_barmotin Barmo 97.8 2.7E-06 5.8E-11 85.1 -0.9 61 54-118 14-88 (197)
463 PRK03839 putative kinase; Prov 97.8 9.7E-05 2.1E-09 72.0 9.5 34 68-102 2-35 (180)
464 TIGR01313 therm_gnt_kin carboh 97.8 9.6E-05 2.1E-09 70.7 9.3 32 69-101 1-32 (163)
465 cd03270 ABC_UvrA_I The excisio 97.8 1.2E-05 2.5E-10 82.0 3.0 33 48-83 6-38 (226)
466 KOG0054 Multidrug resistance-a 97.8 7.6E-06 1.6E-10 101.1 1.9 85 32-127 517-602 (1381)
467 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 9.6E-05 2.1E-09 71.8 9.1 33 68-101 1-33 (183)
468 cd03272 ABC_SMC3_euk Eukaryoti 97.8 5.9E-06 1.3E-10 84.1 0.3 34 48-89 13-46 (243)
469 PRK03846 adenylylsulfate kinas 97.8 0.00027 5.9E-09 70.4 12.0 38 64-101 22-61 (198)
470 PRK09825 idnK D-gluconate kina 97.7 0.00035 7.6E-09 68.8 12.2 62 62-127 2-67 (176)
471 KOG0062 ATPase component of AB 97.7 8.4E-06 1.8E-10 91.1 0.8 136 42-180 85-231 (582)
472 PRK14738 gmk guanylate kinase; 97.7 0.0003 6.5E-09 70.8 11.8 31 60-90 7-37 (206)
473 PRK00131 aroK shikimate kinase 97.7 3E-05 6.5E-10 73.9 4.0 35 66-101 4-38 (175)
474 COG2401 ABC-type ATPase fused 97.6 2.4E-05 5.3E-10 85.7 2.5 39 49-90 395-433 (593)
475 cd02021 GntK Gluconate kinase 97.6 0.00027 5.9E-09 66.5 9.3 34 68-102 1-34 (150)
476 cd01428 ADK Adenylate kinase ( 97.6 0.0002 4.4E-09 69.9 8.4 32 69-101 2-33 (194)
477 cd03279 ABC_sbcCD SbcCD and ot 97.6 2.9E-05 6.2E-10 78.2 2.3 34 54-90 18-52 (213)
478 PRK02496 adk adenylate kinase; 97.6 0.00012 2.6E-09 71.6 6.5 34 67-101 2-35 (184)
479 PRK14530 adenylate kinase; Pro 97.6 9.4E-05 2E-09 74.5 5.9 33 68-101 5-37 (215)
480 PRK00625 shikimate kinase; Pro 97.6 7.4E-05 1.6E-09 73.6 4.6 33 68-101 2-34 (173)
481 cd07374 CYTH-like_Pase CYTH-li 97.6 0.00027 5.8E-09 68.9 8.4 98 279-382 33-156 (174)
482 COG1428 Deoxynucleoside kinase 97.5 2.4E-05 5.3E-10 79.2 0.4 56 177-237 126-185 (216)
483 cd00071 GMPK Guanosine monopho 97.5 0.00028 6.1E-09 66.6 7.4 24 68-91 1-24 (137)
484 COG1703 ArgK Putative periplas 97.5 0.00039 8.4E-09 73.9 9.1 137 56-244 41-202 (323)
485 PRK14528 adenylate kinase; Pro 97.5 0.00025 5.3E-09 70.3 7.3 34 67-101 2-35 (186)
486 cd03240 ABC_Rad50 The catalyti 97.5 2.1E-05 4.6E-10 78.9 -0.2 111 68-180 24-154 (204)
487 COG1936 Predicted nucleotide k 97.5 0.00061 1.3E-08 67.3 9.8 111 68-215 2-115 (180)
488 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.3E-09 69.0 4.4 32 69-101 2-33 (154)
489 TIGR00041 DTMP_kinase thymidyl 97.5 0.00029 6.3E-09 69.2 7.6 25 67-91 4-28 (195)
490 cd07756 CYTH-like_Pase_CHAD Un 97.5 0.00078 1.7E-08 67.9 10.7 116 278-393 33-176 (197)
491 cd03283 ABC_MutS-like MutS-lik 97.5 4.4E-05 9.6E-10 76.6 1.7 67 51-128 15-81 (199)
492 PLN02772 guanylate kinase 97.5 0.00066 1.4E-08 74.9 10.9 164 63-240 132-303 (398)
493 TIGR00455 apsK adenylylsulfate 97.5 0.001 2.2E-08 65.2 11.0 35 66-100 18-54 (184)
494 PRK12338 hypothetical protein; 97.5 0.00022 4.8E-09 76.7 6.8 27 65-91 3-29 (319)
495 PRK14532 adenylate kinase; Pro 97.4 0.00044 9.5E-09 67.8 8.1 32 69-101 3-34 (188)
496 cd01672 TMPK Thymidine monopho 97.4 0.00047 1E-08 66.9 8.0 24 67-90 1-24 (200)
497 cd01673 dNK Deoxyribonucleosid 97.4 0.00016 3.5E-09 71.0 4.8 60 176-240 123-184 (193)
498 PF03308 ArgK: ArgK protein; 97.4 0.00025 5.3E-09 74.2 6.1 115 61-188 24-153 (266)
499 PRK14527 adenylate kinase; Pro 97.4 0.00024 5.3E-09 70.1 5.8 24 67-90 7-30 (191)
500 COG1245 Predicted ATPase, RNas 97.4 0.00011 2.3E-09 81.6 3.5 34 59-95 363-397 (591)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.9e-178 Score=1468.54 Aligned_cols=655 Identities=84% Similarity=1.252 Sum_probs=637.4
Q ss_pred CCcccCCCCCCCCcccccccchhhhcccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHH
Q 006094 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (661)
Q Consensus 1 ~~~~~~~~~~s~~r~~~ll~~~~~l~~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (661)
||||+ +++.|++|+.|||++|+++|++|+++.++|.+++.+++|++|++.+++++++..+...++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 99999 88999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCcc
Q 006094 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 81 TLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
||++.|++.+|+++.|++|+|+.......++|++|.++|++.+.++|..|++|+.+.+|.|||..+.+.+.....+++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999998899999999976555577899999999999999999999999999999999999988765567788999
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
|||+||+|++++++++++|++|||++|.++++.||+.||+.++|+++++++++|.+.++|+|.+||+|++++||+||.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeeeeccCCCccHHHHHHHHcccccccccceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCC
Q 006094 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (661)
Q Consensus 241 ~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l~~~~~~~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~ 320 (661)
|+|++++.|++||+|+.+++..++|+..|.+.....+++++||||+||++||++|++|||+|+++|+|+||||+|++|+|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ceeeeeeEEEeehhhHHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCc
Q 006094 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 400 (661)
Q Consensus 321 fi~rp~~ef~V~v~~~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~~~~V~~~~~~Lgl~g~~ 400 (661)
||++|+++|||++++++||++|||+++|+|+|+|++|.+|+++|++|||||||++||||+|.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccchhHHHHHHhhhcccccCCChhhhhccccCcccccCchhhhhhhhhhhhccccccccccccccccccccccccccccc
Q 006094 401 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVN 480 (661)
Q Consensus 401 i~kSYLEli~lek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (661)
||+||||||||||+++++|+||||||+|||+|+++|+||||||+|||||+|+||+++|||||||+||+||++||++++++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSYSTQRDKNLSKLTGLAVT 479 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccchhhHHHHHHhhHhHhHHHHHHHHHHhhccccccccCccccccceeecccCCCCCcceeecc
Q 006094 481 NRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFTSRIEEMNTKFAIRKVSASQQNLALQAEACNGSGPTSLFMTG 560 (661)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (661)
+||||+|++++||++ |||+|||||||||+|||||||||||||||||||+++|+||||||+|+|+|+||||||||||++|
T Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (656)
T PLN02318 480 NRRFDERNSESPAAL-NQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIKKNSPSQQNLALQAEACNGSAPTSYFVSG 558 (656)
T ss_pred ccccCCCCCCCchhh-ccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccccCChhhhhhhccccccCCCCcchhhhcc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCcccccccchhHHHHHHHhhhhHHHHHhHhhHHHHHHHhhhhcchhcccCCCCceeeeccCCcce
Q 006094 561 LANGSLTGSVLPNSSSSSQLARESPLMEEVLLVARGQRQIMHQLDSISNLLHEYWGERTRQERTDRPSRVIDVDSIGVPL 640 (661)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (661)
++||+|||++||+|||||||++|+||||||..|+|||||||||||+|+|||||++|||++.. .+++.+.++++..+|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 636 (656)
T PLN02318 559 LGNGSLTGSILPLSSSSSQLAKESPLMEEILGIARGQRQVMHQLDNLSNLLHESLGERSGRN--RRNSRLLNVDSSQLPL 636 (656)
T ss_pred CCCcccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhhccccccCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999554 5667788999999999
Q ss_pred eeeeeccceeeeeeecccc
Q 006094 641 ILTLAVGGLGLFLFKGLTF 659 (661)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~ 659 (661)
+++||+||+|+|+|+++.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~ 655 (656)
T PLN02318 637 ILSLAIGGIGIFLFKRLKN 655 (656)
T ss_pred HHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999865
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=290.37 Aligned_cols=174 Identities=37% Similarity=0.675 Sum_probs=162.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCcccccc------ccccccCCCCCCchhhHHHHHHhhhcccc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~~~~~~------~i~~~fq~p~~~d~~tl~enL~~L~~g~~ 135 (661)
+++++|||+|+|||||||+++.|...++ ....|+.|+|+.... ....+|++|.+||++.+.++|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 5568999999999999999999999994 678999999965322 34679999999999999999999999999
Q ss_pred ccccccccccccccccceeeccCccEEEEEehhhhhc-cccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 136 I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
+..|.|+|.+|.+.. ++..+.+.+|||+||++++++ ++++++|++|||++|.|+|++||+.||+.+||++++.++++|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999975 577889999999999999996 899999999999999999999999999999999999999999
Q ss_pred HhhcccchhhccCCCCCCceEEEE
Q 006094 215 SETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
...++|+|++||+|++++||+||+
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip 188 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIP 188 (218)
T ss_pred HHhhChhhhhccCcccccceEEee
Confidence 999999999999999999999997
No 3
>PTZ00301 uridine kinase; Provisional
Probab=99.97 E-value=5e-30 Score=257.86 Aligned_cols=175 Identities=31% Similarity=0.528 Sum_probs=155.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-----CC-ceEEecCCccccccc------cccccCCCCCCchhhHHHHHHhhhcc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM-----PS-IAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEG 133 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll-----p~-~g~I~lD~~~~~~~~------i~~~fq~p~~~d~~tl~enL~~L~~g 133 (661)
.++|||+|+||||||||++.|...+ +. +..+++|+|+..... -..+|++|.+||++.+.+.|..|+.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4799999999999999999887553 22 458899999754321 13689999999999999999999999
Q ss_pred ccccccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHH
Q 006094 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (661)
Q Consensus 134 ~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~ 212 (661)
+.+..|.||+..+.+.. ....+.+.+|||+||+|+++ +++++++|++|||++|.++++.||+.||+.+||++++++++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999998875 45677888999999999985 78999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhccCCCCCCceEEEECCC
Q 006094 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 213 q~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
+|...+.|++.+||+|++.+||+||++..
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 99999999999999999999999997554
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=1.6e-28 Score=242.38 Aligned_cols=171 Identities=37% Similarity=0.672 Sum_probs=145.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC--------CceEEecCCccccc--------cccccccCCCCCCchhhHHHHHHhhh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp--------~~g~I~lD~~~~~~--------~~i~~~fq~p~~~d~~tl~enL~~L~ 131 (661)
+|||+||||||||||++.|...+. ..+.+.+|+++... ....+.|++|.++|++.+.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999873 14577888875321 11246788999999999999999999
Q ss_pred ccccccccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHH
Q 006094 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (661)
Q Consensus 132 ~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeV 210 (661)
+|+.+..|.|++..+.+.. ......+.++||+||+|+++ +++++++|++|||+++.++++.||+.||+.+||++++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999998776 34446788999999999998 479999999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 211 IHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
+++|. .++|+|.+||+|+++.||+||++.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESC
T ss_pred EEEee-cCChhhhhheeccccccEEEECCC
Confidence 99998 999999999999999999999854
No 5
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.95 E-value=2e-27 Score=245.36 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=146.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCcccccc-----------ccccccCC--CCCCchhhHHHHHHhh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~~~-----------~i~~~fq~--p~~~d~~tl~enL~~L 130 (661)
+|||+|+|||||||+++.|...+. .+..|..|+|+...+ ..+.+|++ |++++++.+.+.+..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998772 367899999975321 13478999 9999999999999999
Q ss_pred hccccccccccccc----------cccccccceeeccCccEEEEEehhhhh----ccccCCCCEEEEEEcCchhHHHHHH
Q 006094 131 KEGKAVQVPIYDFK----------SSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 196 (661)
Q Consensus 131 ~~g~~I~~P~yd~~----------~~~r~~~~~~~v~~a~VVIVEGilaL~----deLr~llDlkIfVdad~diRLiRRI 196 (661)
++|+.+..|.|++. .+.+..++ ....+.++||+||++.+. .++++++|++|||+++.++|++||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 23333322 235789999999999543 4899999999999999999999999
Q ss_pred HHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 197 ~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
.||+.+||++.|.|+++|.+++ |+|.+||+|++.+|||+|.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999999999999998 9999999999999999994
No 6
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=224.45 Aligned_cols=151 Identities=26% Similarity=0.377 Sum_probs=135.9
Q ss_pred cHHHHHHHHccccccc--ccceeeeecCCCCCCcccccceEEEe-ecCCeEEEEEeeeecCCCceeeeeeEEEee--hhh
Q 006094 261 TVDEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (661)
Q Consensus 261 ~~~~IravL~~l~~~~--~~~~~DIYl~pP~~df~~tde~LRvR-~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~--v~~ 335 (661)
....+++.|.+.+... +..+.|+||++||+||+.+++++|+| ..+|.+.||||||+++.+.+++.+++++|+ .++
T Consensus 12 d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~ 91 (178)
T COG1437 12 DLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKA 91 (178)
T ss_pred CHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHH
Confidence 3478889998775444 44566999999999999999999999 788999999999999999999999999998 688
Q ss_pred HHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCC-CCcccchh
Q 006094 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLD-GSYVPRTY 405 (661)
Q Consensus 336 ~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~V~~~~~~Lgl~-g~~i~kSY 405 (661)
...|.+|||..++.|+|.|++|..|+++|+||.|+||| +|+||+-. +++.+.+++++|||. ++.+++||
T Consensus 92 ~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG-~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sY 170 (178)
T COG1437 92 LEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLG-DFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSY 170 (178)
T ss_pred HHHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCc-ccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhH
Confidence 89999999999999999999999999999999999999 99999433 567899999999996 79999999
Q ss_pred HHHHHHhh
Q 006094 406 IEQIQLEK 413 (661)
Q Consensus 406 LEli~lek 413 (661)
|||+ .++
T Consensus 171 lELl-~~~ 177 (178)
T COG1437 171 LELL-LEK 177 (178)
T ss_pred HHHH-hcc
Confidence 9999 543
No 7
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.93 E-value=8.4e-26 Score=224.86 Aligned_cols=178 Identities=36% Similarity=0.613 Sum_probs=157.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC--CCceEEecCCcccccc------ccccccCCCCCCchhhHHHHHHhhhccccc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD~~~~~~~------~i~~~fq~p~~~d~~tl~enL~~L~~g~~I 136 (661)
++.+|||+|+||||||||++.|.+.+ ..+..+++|+|+.... .....|++|..+++..+.+.|..+..+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 56799999999999999999999998 3567899999854321 234678889999999999999999999999
Q ss_pred cccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 137 ~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
..|.|++..+.+.. ......+.+++|+||+++++ +++.+.+|.+|||++|.++|+.|++.|+...+|.+.++++++|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 99999999988764 34556778899999999997 68899999999999999999999999999999999999999999
Q ss_pred hhcccchhhccCCCCCCceEEEECCCCC
Q 006094 216 ETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
.++.|.|.+|++|.++.||+||.|+++.
T Consensus 164 ~~~~~~~~~~i~~~~~~AD~vI~~~~~~ 191 (209)
T PRK05480 164 STVRPMHLQFIEPSKRYADIIIPEGGKN 191 (209)
T ss_pred HhhhhhHHhhccHhhcceeEEecCCCcc
Confidence 9999999999999999999999987633
No 8
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=3.5e-27 Score=261.76 Aligned_cols=399 Identities=23% Similarity=0.300 Sum_probs=324.7
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC---------CceEEecCCcccc-------cccc-ccccCCCCCCchhhH
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS-------SRII-DGNFDDPRLTDYDTL 123 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~llp---------~~g~I~lD~~~~~-------~~~i-~~~fq~p~~~d~~tl 123 (661)
..+..+++||+.|+++|||||++..+...+. +...++.|.++.. .... .++|++|++|+++++
T Consensus 39 ~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~ 118 (473)
T KOG4203|consen 39 PEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELL 118 (473)
T ss_pred ccCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhH
Confidence 3466789999999999999998888876652 2333344433210 1112 489999999999999
Q ss_pred HHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhc-cccCCCCEEEEEEcCchhHHHHHHHHHHHh
Q 006094 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (661)
Q Consensus 124 ~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~diRLiRRI~RDi~e 202 (661)
...+..+++|..+..|.|++..+.+...+...+.+++++++||++++++ ++++++|.++||+++.+.++.||+.|++.+
T Consensus 119 ~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~ 198 (473)
T KOG4203|consen 119 YLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVE 198 (473)
T ss_pred HHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhh
Confidence 9999999999999999999999999776778889999999999999994 899999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHcccccccccceee
Q 006094 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYD 282 (661)
Q Consensus 203 RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l~~~~~~~~~D 282 (661)
+|++.+.++.||..+++|+|..||+|++++||++|+.. ..|.+ +.+....+++..|......
T Consensus 199 ~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~------~~n~v-----ai~l~~~~i~~~L~~~~~~------- 260 (473)
T KOG4203|consen 199 RGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG------GDNDV-----AIDLIVQHILSILAEKSYV------- 260 (473)
T ss_pred hcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc------ccccc-----cceeeehhhhhhhhccccc-------
Confidence 99999999999999999999999999999999999743 33333 2233334444444321100
Q ss_pred eecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEeehhhHHHHhhcCCeEEEEEEeeeeeeeeCCE
Q 006094 283 IYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRV 362 (661)
Q Consensus 283 IYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v~~~~gL~~LGf~~~a~V~R~re~y~~g~~ 362 (661)
T Consensus 261 -------------------------------------------------------------------------------- 260 (473)
T KOG4203|consen 261 -------------------------------------------------------------------------------- 260 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCcccchhHHHHHHhhhcccccCCCh--hhhhccccCcccccC--
Q 006094 363 CVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPD--DLKTKLSIDDDLVSS-- 438 (661)
Q Consensus 363 ~i~lD~ve~Lg~~FveI~g~~~~~V~~~~~~Lgl~g~~i~kSYLEli~lek~~~~~~~~~~--~~~~~~~~~~~~~~~-- 438 (661)
++++.++.+|+ +++.+++...+...+
T Consensus 261 --------------------------------------------------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~ 290 (473)
T KOG4203|consen 261 --------------------------------------------------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRH 290 (473)
T ss_pred --------------------------------------------------cccccceecCCccccCCceeEeecCCcCCC
Confidence 55566777777 889998776666665
Q ss_pred chhhhhhhhhhhhcccccccccccccccccccccccccccccccccCCCCCCCCccccccchhhHHHHHHhhHhHhHHHH
Q 006094 439 PKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEF 518 (661)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
|....+...+ |+++.+.+.++.|...+.+.+.+++...++.. +...+...|....+.+.+.+.+.+ +.||+++
T Consensus 291 ~~~~~~~~~v--rl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~----~vri~~i 363 (473)
T KOG4203|consen 291 PFSFYSDHLV--RLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPRSGESMETALRAACK----GVRIGKI 363 (473)
T ss_pred CHHHHHHHHH--HHHhhcccCcccceeeeEecccccchhccccc-chhccCCCCcchhHHHHHHHHHcC----Cceeeee
Confidence 4444443333 59999999999999999999999999999888 777877888766666666666666 9999999
Q ss_pred HH-HHHHhhccccccccCccccccc---eeecccCCCCCcceeecccCCCccccccccCCCCcccccccchhHHHHHHHh
Q 006094 519 TS-RIEEMNTKFAIRKVSASQQNLA---LQAEACNGSGPTSLFMTGLANGSLTGSVLPNSSSSSQLARESPLMEEVLLVA 594 (661)
Q Consensus 519 ~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (661)
+. |.++.+.+-......|.+++.- +.+..|||.++...|...+.+| +....+...+|....+.++|+....
T Consensus 364 l~qr~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~~~~~a~~~ll~~g-----v~~~~i~~~~ll~~~~~~~~~~~~f 438 (473)
T KOG4203|consen 364 LIQRDEETGEPELHYEKLPKDISDRVLLLDPVLATGNSAMMAIILLLDHG-----VPEENIIFLNLLAAPQGIHEVAYAF 438 (473)
T ss_pred EeechhhccchhhhhhhCccccccceeeecchhhcchhHHHHHHHHHhCC-----CcHHHhHHHHHHhhhhhhhHHHHhc
Confidence 99 9999888766666677777776 8889999999999999999999 6777888899999999999999999
Q ss_pred hhhHHHHHhHhhHHHHHHHhhhhcc
Q 006094 595 RGQRQIMHQLDSISNLLHEYWGERT 619 (661)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (661)
++++++++|+|...|..+....+..
T Consensus 439 ~~v~~v~~~~d~~~~~~~~~~pg~g 463 (473)
T KOG4203|consen 439 PKVKIVTSQIDKLLNEKRYVVPGLG 463 (473)
T ss_pred ccceeehhhhcccccccceECcccc
Confidence 9999999999999998777665443
No 9
>PLN02348 phosphoribulokinase
Probab=99.93 E-value=1.6e-25 Score=241.93 Aligned_cols=176 Identities=27% Similarity=0.494 Sum_probs=153.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCC-------------------CceEEecCCcccccc----ccccccCCCC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSSR----IIDGNFDDPR 116 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-------------------~~g~I~lD~~~~~~~----~i~~~fq~p~ 116 (661)
....+++++|||+|+||||||||++.|...+. .+.+|++|+|+...+ ..+..+.+|.
T Consensus 43 ~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~ 122 (395)
T PLN02348 43 LAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPR 122 (395)
T ss_pred hccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcc
Confidence 33446789999999999999999999999873 235899999975332 2345667889
Q ss_pred CCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhc-cccCCCCEEEEEEcCchhHHHHH
Q 006094 117 LTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKR 195 (661)
Q Consensus 117 ~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~diRLiRR 195 (661)
.++++.+.+.|..|++|+.+.+|.||+.++.... ...+.+.++||+||++++.+ .+++++|++|||+++.++++.||
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RR 200 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWK 200 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHH
Confidence 9999999999999999999999999999987654 23567899999999999985 69999999999999999999999
Q ss_pred HHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 196 VFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 196 I~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
++||+.+||++.++++++|. .+.|+|.+||+|.+++||+||.
T Consensus 201 I~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 201 IQRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HHhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 99999999999999999985 6799999999999999999994
No 10
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=1.9e-25 Score=218.99 Aligned_cols=169 Identities=45% Similarity=0.725 Sum_probs=147.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCccccc---cccccccCCCCCCchhhHHHHHHhhhccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~~~~~---~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~ 140 (661)
+|||+|++|||||||++.|+..+ ..+..|++|+|+... .....+++++..+|++.+.++|..+++++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 357799999997532 23345778888899999999999999999999999
Q ss_pred cccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchh-HHHHHHHHHHHhhCCCHHHHHHHHHhhcc
Q 006094 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (661)
Q Consensus 141 yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~di-RLiRRI~RDi~eRG~s~EeVi~q~~~~v~ 219 (661)
||+..+.+.......+++.++||+||++++++++++++|++|||+++.++ |+.||+.||+.+||++.++++.+| . ..
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99999988764456788999999999999999999999999999999998 999999999999999999999996 4 45
Q ss_pred cchh-hccCCCCCCceEEEE
Q 006094 220 PMYK-AFIEPDLQTAHIKII 238 (661)
Q Consensus 220 P~~~-~fIeP~k~~ADIII~ 238 (661)
|+++ .++.|.++.||+|++
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 6655 455779999999973
No 11
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.93 E-value=2.2e-25 Score=225.54 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=145.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCccccccc---ccc--ccCCCCCCchhhHHHHHHhhhc-ccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI---IDG--NFDDPRLTDYDTLLENIRGLKE-GKA 135 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~~~~---i~~--~fq~p~~~d~~tl~enL~~L~~-g~~ 135 (661)
+|||+|+||||||||++.|++.+. .+..|++|+|+..... .+. .+..|..+|...+.+.|..++. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999871 3567899999654321 121 2456889999999999999998 478
Q ss_pred ccccccccccccccccceeeccCccEEEEEehhhhhcc------ccCCCCEEEEEEcCchhH---HHHHHHHHHHhhCCC
Q 006094 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (661)
Q Consensus 136 I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de------Lr~llDlkIfVdad~diR---LiRRI~RDi~eRG~s 206 (661)
+..|.||+..+.+.......+++.++||+||+++++++ +++++|++|||++|.+++ +.+|..|+..++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887644444778899999999999864 899999999999999985 778888888888888
Q ss_pred HHHHHHH----------------HHhhcccchhhccCCCCCCceEEEECCC
Q 006094 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 207 ~EeVi~q----------------~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
+..+++| |.+.++|++.+||.|++.+||+||+.+.
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~ 211 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGA 211 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCC
Confidence 8876654 7779999999999999999999998654
No 12
>PRK15453 phosphoribulokinase; Provisional
Probab=99.93 E-value=4.4e-25 Score=229.65 Aligned_cols=173 Identities=20% Similarity=0.338 Sum_probs=145.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCcccccc-----------ccccccCC--CCCCchhhHHHHH
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENI 127 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~~~-----------~i~~~fq~--p~~~d~~tl~enL 127 (661)
++++|||+|+|||||||+++.|+..+. ....|..|+|+...+ ..+.+|++ |++++++.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 456999999999999999999998772 356799999975211 12458888 9999999999999
Q ss_pred Hhhhccccccccccccc-----cccccccc---eeec-cCccEEEEEehhhhh----ccccCCCCEEEEEEcCchhHHHH
Q 006094 128 RGLKEGKAVQVPIYDFK-----SSSRIGYR---TLEV-PSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVK 194 (661)
Q Consensus 128 ~~L~~g~~I~~P~yd~~-----~~~r~~~~---~~~v-~~a~VVIVEGilaL~----deLr~llDlkIfVdad~diRLiR 194 (661)
..|++++.+..|.|++. .+.+..+. ...+ ++.++||+||++.+. .+++.++|++|||+++.++|++|
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 99999999999988632 23333211 1123 579999999999984 36899999999999999999999
Q ss_pred HHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 195 RI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
|+.||+.+||++.|.|+++|.+++ |+|.+||.|++.+|||++.
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 999999999999999999999885 9999999999999999874
No 13
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.92 E-value=1.5e-24 Score=212.15 Aligned_cols=147 Identities=19% Similarity=0.258 Sum_probs=132.8
Q ss_pred HHHHHHHccccccc--ccceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEee--hhhHHH
Q 006094 263 DEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGG 338 (661)
Q Consensus 263 ~~IravL~~l~~~~--~~~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~--v~~~~g 338 (661)
+.++..|...+... ...+.|+||.+|++++..++.|||+|..++.+.||||||..+..++++++++++|+ ..+.++
T Consensus 14 ~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~i 93 (174)
T TIGR00318 14 EKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQI 93 (174)
T ss_pred HHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHH
Confidence 56777776655443 33456999999999999999999999998999999999999999999999999996 688889
Q ss_pred HhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEecc---------HHHHHHHHHHcCCCCCcccchhHHHH
Q 006094 339 LMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDGSYVPRTYIEQI 409 (661)
Q Consensus 339 L~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~---------~~~V~~~~~~Lgl~g~~i~kSYLEli 409 (661)
|.+|||.+++.+.|.|++|..|+++|++|+|+||| +||||++.. ++.+.+++++|||.++.+++||+||+
T Consensus 94 L~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell 172 (174)
T TIGR00318 94 LKKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELL 172 (174)
T ss_pred HHHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHh
Confidence 99999999999999999999999999999999999 999998874 36899999999998899999999998
Q ss_pred H
Q 006094 410 Q 410 (661)
Q Consensus 410 ~ 410 (661)
.
T Consensus 173 ~ 173 (174)
T TIGR00318 173 S 173 (174)
T ss_pred h
Confidence 3
No 14
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.92 E-value=2.8e-24 Score=214.22 Aligned_cols=174 Identities=36% Similarity=0.641 Sum_probs=155.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCcccc------ccccccccCCCCCCchhhHHHHHHhhhccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~~~~------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~ 138 (661)
.+|||+|+||||||||++.|.+.++ ..+.+++|+|+.. ....+++|+.|..++...+.+.|..+..|..+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~ 86 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEec
Confidence 4999999999999999999999984 6789999998532 1235678999999999999999999999999999
Q ss_pred cccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhh
Q 006094 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (661)
Q Consensus 139 P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~ 217 (661)
|.||+..+.+.. ....+.+.+++|+||++++. ..+.+.+|.+|||+++.++++.|++.|+...+|++.++++++|...
T Consensus 87 p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~ 165 (207)
T TIGR00235 87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165 (207)
T ss_pred ccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHh
Confidence 999998887643 44567788999999999986 5688899999999999999999999999999999999999999999
Q ss_pred cccchhhccCCCCCCceEEEECCC
Q 006094 218 VYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 218 v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
++|+|.++++|.+..||+||.|+.
T Consensus 166 ~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 166 VRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred hhhhHHHhCcccccccEEEEcCCC
Confidence 999999999999999999998755
No 15
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.90 E-value=2.3e-23 Score=205.45 Aligned_cols=175 Identities=35% Similarity=0.646 Sum_probs=153.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEecCCccccc------cccccccCCCCCCchhhHHHHHHhhhcccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD~~~~~~------~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P 139 (661)
+|||+|||||||||++++|.+.+ +.+..+++|+|+... ......+++|..++++.+.+.+..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999997 357899999986321 1234567888899999999999999999999999
Q ss_pred ccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhc
Q 006094 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (661)
Q Consensus 140 ~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v 218 (661)
.|++..+.+.... ..+.+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.|+..+||++.++++++|..+.
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999999876432 356778999999999998 57889999999999999999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCceEEEECCCCC
Q 006094 219 YPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
.|.|..+++|++..||+||.|+.++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCc
Confidence 9999999999999999999886543
No 16
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.89 E-value=5.9e-23 Score=214.28 Aligned_cols=171 Identities=29% Similarity=0.510 Sum_probs=147.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCccccc----cccccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~~~~~----~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
+|||+|+||||||||++.|+++++ +..++.+|+++... ...++.+++|...+++.+.+++..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999983 34478999885422 234667778888878888999999999999999999
Q ss_pred ccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhccc
Q 006094 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (661)
Q Consensus 142 d~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P 220 (661)
++..+.... ...+.+.++||+||+++++ +.+++++|++|||+++.++++.|+++|++.++|.+.+++.++|. .+.|
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~-~r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIE-ARKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHH-hhch
Confidence 999886543 2345678999999999886 48999999999999999999999999999999999999999995 4699
Q ss_pred chhhccCCCCCCceEEEECCC
Q 006094 221 MYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 221 ~~~~fIeP~k~~ADIII~N~~ 241 (661)
++.+||+|.+.+||+||...-
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred hHHHHhccccccCcEEEEccC
Confidence 999999999999999997543
No 17
>PRK07429 phosphoribulokinase; Provisional
Probab=99.89 E-value=6.1e-23 Score=219.06 Aligned_cols=176 Identities=27% Similarity=0.473 Sum_probs=151.0
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCccccc----cccccccCCCCCCchhhHHHHHHhhhccccc
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~~~~~----~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I 136 (661)
.+++++|||+|+||||||||++.|++.++ ...++++|+++... +..++...+|...+.+.+.+++..++.|+.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 45689999999999999999999999983 35688999986432 2245556678888888999999999999999
Q ss_pred cccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 137 ~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
.+|.|++..+.... ...+.+.++||+||++++. ..+++++|++|||++|.++++.|+++|++.++|.+.+++.++|.
T Consensus 85 ~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999887643 2346678999999999766 56789999999999999999999999999999999999999885
Q ss_pred hhcccchhhccCCCCCCceEEEECCC
Q 006094 216 ETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
..+|.+.+||+|.+..||+||.+-.
T Consensus 163 -~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 163 -AREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred -HhCccHhhhhcccccCCCEEEEcCC
Confidence 5699999999999999999997543
No 18
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=6.4e-23 Score=215.49 Aligned_cols=179 Identities=19% Similarity=0.255 Sum_probs=144.9
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCccccccc---cc--cccCCCCCCchhhHHHHHHhhh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSRI---ID--GNFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~~~~---i~--~~fq~p~~~d~~tl~enL~~L~ 131 (661)
...|.+|||+|||||||||++++|.+++ | .+..+++|+|+..... .+ ..+..|..||...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4568999999999999999999998886 2 2456889998653321 11 3456789999999999999999
Q ss_pred cccc-ccccccccccccccccceeeccCccEEEEEehhhhh-cc----------ccCCCCEEEEEEcCchhHHHHHHHHH
Q 006094 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EK----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (661)
Q Consensus 132 ~g~~-I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-de----------Lr~llDlkIfVdad~diRLiRRI~RD 199 (661)
.|.. +..|.||+..+.+.......+.+.+|||+||+++|. ++ +++++|++|||++|.+++..|++.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 9985 999999999999876555666889999999999996 33 46999999999999999998888885
Q ss_pred HH--hh-------------CCCHH----HHHHHHHhhcccchhhccCCCCCCceEEEECCC
Q 006094 200 IQ--RV-------------GQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 200 i~--eR-------------G~s~E----eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
.. ++ |.+.+ .+++.|.+...|++.+||.|++.+||+||..+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 42 22 33433 334567999999999999999999999998654
No 19
>PRK05439 pantothenate kinase; Provisional
Probab=99.89 E-value=1.5e-22 Score=214.28 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=148.6
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCccccccc-----cccccCCCCCCchhhHHHHHHhh
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGL 130 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~~~~-----i~~~fq~p~~~d~~tl~enL~~L 130 (661)
....+++|||+|++||||||+++.|...+. .+..|++|||+..... .--.+..|.+||...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 445689999999999999999999998761 4789999999754321 11235679999999999999999
Q ss_pred hcccc-ccccccccccccccccceeeccCccEEEEEehhhhh-ccc------cCCCCEEEEEEcCchhHHHHHHHHHHHh
Q 006094 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (661)
Q Consensus 131 ~~g~~-I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deL------r~llDlkIfVdad~diRLiRRI~RDi~e 202 (661)
+.|+. +..|.||+..+.+.......+.+.+|||+||++++. ++. ++++|++|||++|.++...|++.|.+.-
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 99987 999999999999876556677889999999999985 444 8999999999999999888877777642
Q ss_pred ---------------hCCCHH----HHHHHHHhhcccchhhccCCCCCCceEEEECCC
Q 006094 203 ---------------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 203 ---------------RG~s~E----eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
.|.+.+ .+.++|...+.|++++||.|++.+||+||..+.
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 355554 445577789999999999999999999998654
No 20
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.83 E-value=2.7e-20 Score=188.68 Aligned_cols=180 Identities=22% Similarity=0.306 Sum_probs=143.9
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce---E-EecCCcccccc---cccc--ccCCCCCCchhhHHHHHHhhh
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA---V-ITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g---~-I~lD~~~~~~~---~i~~--~fq~p~~~d~~tl~enL~~L~ 131 (661)
...++.+|||+|+||||||||++.|++.+ +..| + +++|+++.... ..+. .+..|..|+...+.+.+..++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLR 108 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999998 3334 3 89999865421 1222 234577888888889999998
Q ss_pred ccc-cccccccccccccccccceeeccCccEEEEEehhhhhc-----cccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC
Q 006094 132 EGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (661)
Q Consensus 132 ~g~-~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~diRLiRRI~RDi~eRG~ 205 (661)
.+. .+.+|.|++..+..........+..+++|+||.+++.+ .+.+.+|.+|||++|.++++.|.+.|+ .++|+
T Consensus 109 ~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~ 187 (229)
T PRK09270 109 AGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGL 187 (229)
T ss_pred cCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCC
Confidence 887 89999999988776542222223578999999999864 577899999999999999887777775 46899
Q ss_pred CHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 206 s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
+.+++.++|..+++|.+ .|++|.+..||+||.|+++-
T Consensus 188 s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 188 SPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred CHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 99999999988888877 69999999999999998854
No 21
>PRK06696 uridine kinase; Validated
Probab=99.83 E-value=5.2e-20 Score=185.89 Aligned_cols=178 Identities=18% Similarity=0.262 Sum_probs=138.6
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC--C--ceEEecCCccccccc-cccccCCC-----CCCchhhHHHHHHhhh-
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--S--IAVITMDNYNDSSRI-IDGNFDDP-----RLTDYDTLLENIRGLK- 131 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp--~--~g~I~lD~~~~~~~~-i~~~fq~p-----~~~d~~tl~enL~~L~- 131 (661)
.+++++|||.|++|||||||++.|+..++ + ...+++|+|+..... ....+.++ ..+|+..+.+.+....
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 45689999999999999999999999883 2 344669999764422 11222232 5788888888887643
Q ss_pred cc--ccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 132 EG--KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 132 ~g--~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
.+ ..+..|.|++..+..........++.++||+||++++.+++...+|.+|||++|.++++.|++.|+...+|. .++
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 33 246777888887765432344456778999999999999999999999999999999999999999888885 566
Q ss_pred HHHHHHhhcccchhhccCCC--CCCceEEEECCC
Q 006094 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~--k~~ADIII~N~~ 241 (661)
+...|..++.|.+..|+.+. +++||+||.|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 78888888889988887554 789999998865
No 22
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.78 E-value=2.4e-19 Score=177.67 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=123.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccc------cccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~------i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
+|||+|++||||||+++.|+..+++...|++|+|+..... ..++|++|.++|...+.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999877889999999654321 1258999999999999999999999887666655
Q ss_pred ccccccccc-------------cceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCC
Q 006094 142 DFKSSSRIG-------------YRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (661)
Q Consensus 142 d~~~~~r~~-------------~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s 206 (661)
+........ .......+.++||+||.++++ +++++++|++|||++|.++++.||+.|+..- .|--
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 554332210 123446778899999999998 6899999999999999999999999998322 2212
Q ss_pred HHHHHHHHHhhcccchhhc
Q 006094 207 PEEIIHQISETVYPMYKAF 225 (661)
Q Consensus 207 ~EeVi~q~~~~v~P~~~~f 225 (661)
..+...++.+.|||+|.++
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 3445677888899998864
No 23
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.78 E-value=3.3e-18 Score=166.04 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=128.8
Q ss_pred HHHHHHHHccccc--ccccceeeeecCCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeeEEEee--hhh
Q 006094 262 VDEIKAVMSKEHT--ETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (661)
Q Consensus 262 ~~~IravL~~l~~--~~~~~~~DIYl~pP~~df~~tde~LRvR~~d--g~~~Ltykgp~~d~~fi~rp~~ef~V~--v~~ 335 (661)
.+.++..|..... .....+.|+||..|+.++...+.|||+|..+ +.+.+|||+|..++.+..+++.+++|. ..+
T Consensus 11 ~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~ 90 (169)
T cd07890 11 LEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAM 90 (169)
T ss_pred HHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHH
Confidence 3666777766322 2344566999999999999999999999988 999999999998887778999999995 577
Q ss_pred HHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec------cHHHHHHHHHHcCCCC-CcccchhHHH
Q 006094 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYIEQ 408 (661)
Q Consensus 336 ~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~------~~~~V~~~~~~Lgl~g-~~i~kSYLEl 408 (661)
.+.|.+|||.+.+.+.|.|..|..++++|++|+++||| +|+||++. +.+.+..++..||+.+ +.+++||+|+
T Consensus 91 ~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG-~f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 91 KEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLG-DFVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCC-ceEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 78899999999999999999999999999999999999 89999988 8999999999999987 6789999985
No 24
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.3e-20 Score=194.67 Aligned_cols=265 Identities=20% Similarity=0.230 Sum_probs=189.8
Q ss_pred eeeeecccceeee-ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 33 RYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~-~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
|+++.++++.|.. ..+...++++|||.+++|+ ++||+|.||||||||++++..+- |+.|.|.+||...
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 6788999999966 4446789999999999999 99999999999999999999987 9999999999531
Q ss_pred ---cccccccccCCCCCCchhhHHHHHHhhhc--cc---c-----------cccc-ccccccccccccceeeccCccEEE
Q 006094 104 ---SSRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
.++.+++.||+++++...++.+|++.-.+ |. . +..+ .-+..+.+.++++.++++.++.+.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 24568999999999999999999975322 11 0 1111 134445567788889999999999
Q ss_pred EEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
.++..+++||....+|.. ++..-+.+.+.+ ..+.|.|..-|.| .++.
T Consensus 158 ~~P~iLL~DEaTSALDP~---TT~sIL~LL~~I---n~~lglTIvlITH---------------------------Em~V 204 (339)
T COG1135 158 NNPKILLCDEATSALDPE---TTQSILELLKDI---NRELGLTIVLITH---------------------------EMEV 204 (339)
T ss_pred cCCCEEEecCccccCChH---HHHHHHHHHHHH---HHHcCCEEEEEec---------------------------hHHH
Confidence 999999999999999973 222222222222 2234655443333 3344
Q ss_pred CCCCCCCeeeeccCCCccHHHHHHHHcccccccccceee--eecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCc
Q 006094 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYD--IYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPF 321 (661)
Q Consensus 244 ~~g~~n~v~iLKsa~~v~~~~IravL~~l~~~~~~~~~D--IYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~f 321 (661)
....||.|+++..++-+..+.+.+++.++....+.++.. .-.-.| +...+-++ -..+-.+.|+|-|.-.+.|.
T Consensus 205 vk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~~~~~~----~~~~~~l~-~~~~~~~rl~f~g~~~~~pl 279 (339)
T COG1135 205 VKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEIDLP----EELLERLE-SGDGPLLRLTFTGESADQPL 279 (339)
T ss_pred HHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhccccCc----HHHHhhhc-cCCceEEEEEecCccccchH
Confidence 467788888888888777788888888776655665552 111111 11122222 22345689999999999999
Q ss_pred eeeeeeEEEeehhhHHH
Q 006094 322 IISPRITFEVSVRLLGG 338 (661)
Q Consensus 322 i~rp~~ef~V~v~~~~g 338 (661)
+++.-.+|.|+++++.|
T Consensus 280 is~~~~~~~v~~nIl~G 296 (339)
T COG1135 280 LSEVARRFGVDVNILSG 296 (339)
T ss_pred HHHHHHHhCCceEEEec
Confidence 88888888888877543
No 25
>PRK07667 uridine kinase; Provisional
Probab=99.74 E-value=5.7e-18 Score=167.77 Aligned_cols=165 Identities=16% Similarity=0.324 Sum_probs=121.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCccccccc-cccccCC-----CCCCchhhHHHH-HHhhh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFDD-----PRLTDYDTLLEN-IRGLK 131 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~~~~-i~~~fq~-----p~~~d~~tl~en-L~~L~ 131 (661)
.+.+++|||.|++||||||+++.|+..+. ....+++|+|...... ....+.. ...+|...+.+. +..++
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~ 93 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQ 93 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhc
Confidence 34568999999999999999999999862 4668999998543211 0011111 113455666655 47788
Q ss_pred ccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHH
Q 006094 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (661)
Q Consensus 132 ~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi 211 (661)
.++.+.+|.|++..+.... ....+++.+++|+||+++++.++.+++|.+|||++|.++++.|.+.|+ |.+.+...
T Consensus 94 ~~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~~~~~~ 168 (193)
T PRK07667 94 NETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEET----QKNLSKFK 168 (193)
T ss_pred CCCeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhccc----HhHHHHHH
Confidence 8899999999999876543 334456789999999999988899999999999999999988887654 44444444
Q ss_pred HHHHhhcccchhhccC---CCCCCceEEE
Q 006094 212 HQISETVYPMYKAFIE---PDLQTAHIKI 237 (661)
Q Consensus 212 ~q~~~~v~P~~~~fIe---P~k~~ADIII 237 (661)
.+| .|.+..|++ | +..||+||
T Consensus 169 ~r~----~~a~~~y~~~~~~-~~~ad~i~ 192 (193)
T PRK07667 169 NRY----WKAEDYYLETESP-KDRADLVI 192 (193)
T ss_pred HHh----HHHHHHHHhhcCh-HhhCcEEe
Confidence 444 566777754 5 88999997
No 26
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=6.8e-19 Score=188.85 Aligned_cols=143 Identities=24% Similarity=0.265 Sum_probs=120.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----cc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SS 105 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~ 105 (661)
..+++.++.+.| |.+.+++++||.+++|+ +++|.|||||||||++++|+++. |+.|.|.++|... ..
T Consensus 4 ~~l~i~~v~k~y----g~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k 76 (352)
T COG3842 4 PALEIRNVSKSF----GDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK 76 (352)
T ss_pred ceEEEEeeeeec----CCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh
Confidence 467888888887 57889999999999999 99999999999999999999998 9999999999742 34
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc-cc-----cc-----------ccc-ccccccccccccceeeccCccEEEEEeh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE-GK-----AV-----------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~-g~-----~I-----------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
+.++++||++.+|+++++.+|++.-.. .+ .+ ... .-+...++.++++.++++-++.++.++.
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 678999999999999999999986333 11 01 111 2355567778889999999999999999
Q ss_pred hhhhccccCCCCEE
Q 006094 168 YALSEKLRPLIDLR 181 (661)
Q Consensus 168 laL~deLr~llDlk 181 (661)
+++.||+...+|.+
T Consensus 157 vLLLDEPlSaLD~k 170 (352)
T COG3842 157 VLLLDEPLSALDAK 170 (352)
T ss_pred hhhhcCcccchhHH
Confidence 99999999888874
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=2.6e-18 Score=172.03 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=133.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
|+++.++.++| |...+|++|++.+++|+ ++.|+||||||||||++||.++. |+.|.|.+||...
T Consensus 2 mi~i~~l~K~f----g~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSF----GDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEe----CCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHH
Confidence 68888998888 68899999999999999 99999999999999999999997 8999999999532
Q ss_pred cccccccccCCCCCCchhhHHHHHHhh--h-cc--------------cccccc-ccccccccccccceeeccCccEEEEE
Q 006094 104 SSRIIDGNFDDPRLTDYDTLLENIRGL--K-EG--------------KAVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 104 ~~~~i~~~fq~p~~~d~~tl~enL~~L--~-~g--------------~~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.++.++++||++++|++.++.+|+..- + .+ ..+-.+ ..+..+.+.+++++++++.++.+.++
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 235689999999999999999998521 0 01 111111 24556677888899999999999999
Q ss_pred ehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 166 GilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
+..++.||+...+|. +-+.-.-.+.+++.+.|.|.--|.|.+
T Consensus 155 P~vmLFDEPTSALDP-------Elv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 155 PKVMLFDEPTSALDP-------ELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CCEEeecCCcccCCH-------HHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 999999999998885 333344456677777888766555655
No 28
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.2e-17 Score=178.52 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=116.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++.+.| |...+++++||.++.|+ +++|+|||||||||++++|+++. |+.|.|.++|... ..+
T Consensus 3 ~i~l~~v~K~y----g~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R 75 (338)
T COG3839 3 ELELKNVRKSF----GSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75 (338)
T ss_pred EEEEeeeEEEc----CCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHC
Confidence 57788888887 43338999999999999 99999999999999999999998 8999999999743 346
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccc-----cccc------------cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK-----AVQV------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~-----~I~~------------P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+||++++.+|++.-.+.. .+.. ...++.+.+.++++.++++.++.++-++.+.
T Consensus 76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~ 155 (338)
T COG3839 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVF 155 (338)
T ss_pred CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEE
Confidence 7999999999999999999998633321 1111 2356666777888888999999999999988
Q ss_pred hhccccCCCCEE
Q 006094 170 LSEKLRPLIDLR 181 (661)
Q Consensus 170 L~deLr~llDlk 181 (661)
+.||+...+|.+
T Consensus 156 L~DEPlSnLDa~ 167 (338)
T COG3839 156 LLDEPLSNLDAK 167 (338)
T ss_pred EecCchhHhhHH
Confidence 889988888864
No 29
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.4e-17 Score=167.28 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=131.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc--ccccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN--DSSRIID 109 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~--~~~~~i~ 109 (661)
++++.++.+.| +.+.||+++||.+.+|+ +|+|+||||||||||++.|+++. |+.|.|.++|.. .+...++
T Consensus 3 ~l~i~~v~~~f----~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSF----GGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG 75 (248)
T ss_pred eEEEEeeEEEe----CceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEE
Confidence 55666777766 44899999999999999 99999999999999999999998 899999999974 3445689
Q ss_pred cccCCCCCCchhhHHHHHHhhhcccc----------------ccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~g~~----------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
++||++.+|+|.++.+|+..-..... +.. ..-+..+++.+++..++++.++.++.++.+++.|
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD 155 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD 155 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999964322110 111 1235556777888888899999999999999999
Q ss_pred cccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhc
Q 006094 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (661)
Q Consensus 173 eLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v 218 (661)
|++..+|.. ....+...+.+-..+.+.|.--|.|.+.+.+
T Consensus 156 EPFgALDal------TR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 156 EPFGALDAL------TREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred CCcchhhHH------HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 999888852 2333444445555555666655555555443
No 30
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=6.1e-17 Score=164.45 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=118.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
|+++.++.+.|..+.....+|++++|.+++|+ +++|+||||||||||+++|.++. |+.|.+.++|...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH
Confidence 45688899998776666899999999999999 99999999999999999999998 9999999998522
Q ss_pred ---cccccccccCCCCCCchhhHHHHHHh--hhcccc----------------ccccccccccccccccceeeccCccEE
Q 006094 104 ---SSRIIDGNFDDPRLTDYDTLLENIRG--LKEGKA----------------VQVPIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~tl~enL~~--L~~g~~----------------I~~P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
..+.++|+||++++++..++.||+.- ...+.. +.....++.+++.++++.++++.++.+
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 12458999999999999999999872 111111 111122244566778889999999999
Q ss_pred EEEehhhhhccccCCCCEE
Q 006094 163 IIEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 163 IVEGilaL~deLr~llDlk 181 (661)
+.++.+++.||+...+|..
T Consensus 158 ~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 158 INNPKIILADEPTGNLDSK 176 (226)
T ss_pred hcCCCeEEeeCccccCChH
Confidence 9999999999999999973
No 31
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.9e-17 Score=169.79 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=115.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc---c-----c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---N-----D 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~---~-----~ 103 (661)
++.+.++.+.| +.+.++++|++.++.|+ ++++.|||||||||++++|+++. |+.|.|.+++. + .
T Consensus 2 ~i~i~~~~~~~----~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRF----GAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhc----ccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch
Confidence 45666676766 66788999999999999 99999999999999999999999 99999999997 2 2
Q ss_pred cccccccccCCCCCCchhhHHHHHHhhhccc-------cc-----------cc-cccccccccccccceeeccCccEEEE
Q 006094 104 SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK-------AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 104 ~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~-------~I-----------~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
..+.+|++||++.+|+++++.+|++.-..-. .+ .. ..-+..+.+.++++..+++-++.+.+
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 3467999999999999999999998643211 00 00 12345556677888888999999999
Q ss_pred EehhhhhccccCCCCEE
Q 006094 165 EGIYALSEKLRPLIDLR 181 (661)
Q Consensus 165 EGilaL~deLr~llDlk 181 (661)
|+..++.||+...+|.+
T Consensus 155 eP~vLLLDEPf~ALDa~ 171 (345)
T COG1118 155 EPKVLLLDEPFGALDAK 171 (345)
T ss_pred CCCeEeecCCchhhhHH
Confidence 99999999999888864
No 32
>PRK06547 hypothetical protein; Provisional
Probab=99.61 E-value=3.5e-15 Score=146.03 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=112.4
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccc
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd 142 (661)
+..+.+|+|+|++||||||+++.|++.+ +...+++|+++...... ......+.+.+.. .|+....| ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~--------~~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGL--------AAASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccC--------ChHHHHHHHHHHh--CCCCceec-CC
Confidence 4567899999999999999999999986 56688999886432111 0123344555544 67777777 88
Q ss_pred cccccccccceeeccCccEEEEEehhhhhccccCCCC-----EEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhh
Q 006094 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (661)
Q Consensus 143 ~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD-----lkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~ 217 (661)
+..+.... ...+.+.+++|+||.+++.+++++.+| ++|||++|.++|+.|++.||.. ...-.++|
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~~~~~~w--- 149 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YAPHWEMW--- 149 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hhHHHHHH---
Confidence 88765433 335567789999999999988999999 9999999999999999999832 33333444
Q ss_pred cccchhhccC--CCCCCceEEEE
Q 006094 218 VYPMYKAFIE--PDLQTAHIKII 238 (661)
Q Consensus 218 v~P~~~~fIe--P~k~~ADIII~ 238 (661)
.|..+.|++ +.+..||+|+.
T Consensus 150 -~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 150 -AAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred -HHHHHHHHhcCCChhccEEEec
Confidence 455555554 46789999974
No 33
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.60 E-value=2.5e-16 Score=169.53 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=111.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++++.|....+...+|+++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 57788888887432224579999999999999 99999999999999999999998 89999999997321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
++.++++||++.+++..++.+|+..... +. .+.. ...+......++++..++..++.++.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 2358999999999998999999864221 10 0111 11233344556667777888888888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 158 ~P~iLLlDEPts~LD~ 173 (343)
T TIGR02314 158 NPKVLLCDEATSALDP 173 (343)
T ss_pred CCCEEEEeCCcccCCH
Confidence 8888888999988886
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=1e-15 Score=155.56 Aligned_cols=200 Identities=16% Similarity=0.245 Sum_probs=147.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
...++++.+.+.| |.+.++++|+|.+.+|+ +.+|+|||||||||+++.|.+++ |+.|.|.++|.+..
T Consensus 6 ~~~I~vr~v~~~f----G~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSF----GDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeec----CCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHH
Confidence 4567777776666 88999999999999999 99999999999999999999999 99999999998432
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhh-hcc----------------cccccc-c-cccccccccccceeeccCcc
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGL-KEG----------------KAVQVP-I-YDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L-~~g----------------~~I~~P-~-yd~~~~~r~~~~~~~v~~a~ 160 (661)
++.+++.||+-.+|+..++.||++.- ++. +.+-.+ . .+..+.+.+++...+++-++
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 24578999999999999999999742 211 112122 2 44555566676677788899
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
.+.+++.++|+||+...+|.. .+..-..|++++++.. |. .-++|.++
T Consensus 159 AialdPell~~DEPtsGLDPI---~a~~~~~LI~~L~~~l---g~---------------------------T~i~VTHD 205 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPI---SAGVIDELIRELNDAL---GL---------------------------TVIMVTHD 205 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcc---hHHHHHHHHHHHHHhh---CC---------------------------EEEEEECC
Confidence 999999999999999999973 3333333444433321 32 24666666
Q ss_pred CCCCCCCCCCeeeeccCCCccHHHHHHHHc
Q 006094 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMS 270 (661)
Q Consensus 241 ~~p~~g~~n~v~iLKsa~~v~~~~IravL~ 270 (661)
.+.-...++.+++|..++.+..+...+.+.
T Consensus 206 l~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 206 LDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 666666777788888776665555555554
No 35
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.58 E-value=1.4e-14 Score=149.95 Aligned_cols=179 Identities=20% Similarity=0.280 Sum_probs=134.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCccccccc-----cccccCCCCCCchhhHHHHHH
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~~~~-----i~~~fq~p~~~d~~tl~enL~ 128 (661)
....+.|++|||+|+.|+||||+++.|..++ |.+-.+.+||++..... .--.-..|..||...+.+.+.
T Consensus 76 ~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 76 TNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred cCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHH
Confidence 3556779999999999999999999999986 24678999999654321 111123588999999999999
Q ss_pred hhhcccc-ccccccccccccccccceeeccCccEEEEEehhhhhc-----cccCCCCEEEEEEcCchhHHHHHHHHHHHh
Q 006094 129 GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (661)
Q Consensus 129 ~L~~g~~-I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~diRLiRRI~RDi~e 202 (661)
.++.+.. |..|+|++.++....++...++..+++|+||++++.+ .+.++||+.||||++.+.-..|-+.| ...
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~R-fl~ 234 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIER-FLK 234 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHH-HHh
Confidence 9997766 9999999999999887777788899999999999984 36789999999999988744444444 444
Q ss_pred hCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 203 RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
-|.+....-+.|..+..|+-+.-. -....++..+.|.
T Consensus 235 ~g~~a~~~~~~~~~~~~~~~~~~a-~~~a~~~w~~in~ 271 (283)
T COG1072 235 FGLTAFEDPASYFHNYAPLSEREA-IESARAIWDNINL 271 (283)
T ss_pred cccchhhChhhHhhccCcchHHHH-HHhhhhcceeehh
Confidence 577777666777666666544311 1234555555544
No 36
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.2e-15 Score=155.25 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=120.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++...|......++++++|||.+.+|+ ++||+|+||||||||+++|+++. |+.|.|.++|....
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch
Confidence 478899999999777667789999999999999 99999999999999999999998 89999999996332
Q ss_pred --ccccccccCCCC--CCchhhHHHHHHhhhcc--------------cccccc--ccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKEG--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~--~~d~~tl~enL~~L~~g--------------~~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+.++||+|. +.++.++.+.|..-..- ..+..| .++..+++.++++.++++.++.++.
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 234678999984 46777887777542221 123333 4677888889999999999999999
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
|+.+++.||+...+|.
T Consensus 159 ~PklLIlDEptSaLD~ 174 (252)
T COG1124 159 EPKLLILDEPTSALDV 174 (252)
T ss_pred CCCEEEecCchhhhcH
Confidence 9999999999999996
No 37
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-15 Score=156.09 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=133.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
|+++.++++.| +.+.+++++||.+++|+ ++.++|||||||||++++|.+++ |+.|.|.++|... .
T Consensus 1 MI~~~nvsk~y----~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRY----GNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred Cceeeeeehhc----CCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH
Confidence 57788888887 46789999999999999 99999999999999999999998 9999999999743 3
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccc----------------cccc-c--ccccccccccccceeeccCccEEEEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AVQV-P--IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I~~-P--~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
++.++|+.|...+|++.++.+|++..-.-. -+.. | ..++.+++.++++++++.-.+.+..+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 467999999999999999999997422111 1112 2 34666788888899999989999999
Q ss_pred ehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhh
Q 006094 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (661)
Q Consensus 166 GilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~ 217 (661)
+.+++-||++..+|.. ....+...+.+-.++-|.|..-|.|.+.+.
T Consensus 154 P~ilLMDEPFgALDpI------~R~~lQ~e~~~lq~~l~kTivfVTHDidEA 199 (309)
T COG1125 154 PPILLMDEPFGALDPI------TRKQLQEEIKELQKELGKTIVFVTHDIDEA 199 (309)
T ss_pred CCeEeecCCccccChh------hHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 9999999999888863 233344445555555566665555555433
No 38
>PRK08233 hypothetical protein; Provisional
Probab=99.57 E-value=2.9e-14 Score=137.48 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=105.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccc--ccccccCCC---CCCchhhHHHHHHhhhccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDP---RLTDYDTLLENIRGLKEGKAVQVPI 140 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~--~i~~~fq~p---~~~d~~tl~enL~~L~~g~~I~~P~ 140 (661)
+.+|+|+|++||||||+++.|++.++....+.+|.++.... ...-..... ..++...+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 46999999999999999999999986667788888743211 110001111 122333333333332211
Q ss_pred cccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhC-CCHHHHHHHHHhhc
Q 006094 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQISETV 218 (661)
Q Consensus 141 yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG-~s~EeVi~q~~~~v 218 (661)
...++||+||++... +++.+.+|++|||++|.++++.|++.|+..+.. ......+..|...+
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 112678899988765 578889999999999999999999999864422 23445567777889
Q ss_pred ccchhhccCCCCCCceEEEECC
Q 006094 219 YPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~N~ 240 (661)
+|.|.+++++....|+++|.++
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcCC
Confidence 9999999888888899998644
No 39
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.50 E-value=5.5e-14 Score=137.58 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=111.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc--c--c----c----ccc-ccCCCCCCchhhHHHHHH----hh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--S--R----I----IDG-NFDDPRLTDYDTLLENIR----GL 130 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~--~--~----~----i~~-~fq~p~~~d~~tl~enL~----~L 130 (661)
+|||+|++||||||+++.|.. + +..+|+.|.+... . . . .+. .+.....+|...+.+.+- .+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 589999999999999999998 4 6778888886210 0 0 0 111 112224456555555442 23
Q ss_pred hccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHH
Q 006094 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (661)
Q Consensus 131 ~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeV 210 (661)
...+.+.+|.+......... ......++++|++++++..+...||.+|||++|.++++.|.+.|+ |.+.+++
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 34466778876555443322 112247999999999998888999999999999998877766665 8899999
Q ss_pred HHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
..++..+ .+. ++.+..||+||.|+++.+
T Consensus 151 ~~r~~~Q-~~~-----~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 151 EARIASQ-MPL-----EEKRARADFVIDNSGSLE 178 (179)
T ss_pred HHHHHhc-CCH-----HHHHHhCCEEEECcCCCC
Confidence 9988654 332 234678999999998653
No 40
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.49 E-value=1.2e-13 Score=150.79 Aligned_cols=164 Identities=21% Similarity=0.290 Sum_probs=117.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEecCCccccccc---cc-ccc--------CCCCCCchhhHHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSRI---ID-GNF--------DDPRLTDYDTLLENI 127 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll-p---~~g~I~lD~~~~~~~~---i~-~~f--------q~p~~~d~~tl~enL 127 (661)
.+|++|||+|++|||||||++.|.+++ + ..+.|++|+|+..... .. .++ ..|..+|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 368999999999999999999999887 3 3889999999753211 10 111 125667777777777
Q ss_pred Hhh----hcccccccccccccccc----ccccc--eeeccCccEEEEEehhhhhcc------------------------
Q 006094 128 RGL----KEGKAVQVPIYDFKSSS----RIGYR--TLEVPSSRIVIIEGIYALSEK------------------------ 173 (661)
Q Consensus 128 ~~L----~~g~~I~~P~yd~~~~~----r~~~~--~~~v~~a~VVIVEGilaL~de------------------------ 173 (661)
..+ +.|+.+.+|.||+..+. |.... .....+.+|||+||++++...
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 766 57889999999999976 43211 233578899999999887621
Q ss_pred --ccCCCCEEEEEEcCc-hhHHHHHHHHHHHhh-----CCCHHHHHHHHHhhcccchhhccCC
Q 006094 174 --LRPLIDLRVSVTGGV-HFDLVKRVFRDIQRV-----GQEPEEIIHQISETVYPMYKAFIEP 228 (661)
Q Consensus 174 --Lr~llDlkIfVdad~-diRLiRRI~RDi~eR-----G~s~EeVi~q~~~~v~P~~~~fIeP 228 (661)
+...+|..|++.++. +.-..+|+++...-+ |.+-++|. ++.+..+|.|+.|.+.
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~-~FV~~YmPaY~~y~~~ 431 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVM-DFVSRYLPAYKAYLPT 431 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHhhhHHHHHHHH
Confidence 222577878888765 677788888776543 67777754 4557889999987643
No 41
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.49 E-value=3e-14 Score=140.54 Aligned_cols=161 Identities=21% Similarity=0.261 Sum_probs=107.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----cc-c-------ccccc-ccCCCCCCchhhHHHHH----Hh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-S-------RIIDG-NFDDPRLTDYDTLLENI----RG 129 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~~-~-------~~i~~-~fq~p~~~d~~tl~enL----~~ 129 (661)
.+|||+|+.||||||+++.|... +..+|+.|... .. . ..++- .+......|...+.+.+ ..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~--G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAEL--GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT--T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHC--CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 48999999999999999999994 78899998751 11 1 11221 23334556666666554 23
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
++.-+.+.+|........... .....+++++|.+++++..+...||..|+|++|.++|+.|-+.|| |.+.++
T Consensus 79 ~~~L~~iihP~I~~~~~~~~~----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKFIK----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 444466777865544443322 122238999999999999999999999999999988777766665 999999
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
+..++. .++|..++ ++.||+||.|+++.
T Consensus 151 ~~~ri~-~Q~~~~~k-----~~~ad~vI~N~g~~ 178 (180)
T PF01121_consen 151 AEARIA-SQMPDEEK-----RKRADFVIDNNGSL 178 (180)
T ss_dssp HHHHHH-TS--HHHH-----HHH-SEEEE-SSHH
T ss_pred HHHHHH-hCCCHHHH-----HHhCCEEEECCCCC
Confidence 888874 44555544 47899999999853
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=9.7e-15 Score=157.06 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=107.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++++.|....+...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH
Confidence 46777887776321224679999999999999 99999999999999999999998 88999999986421
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--cc--------------ccccc-ccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
++.++++||++.+|+..++.+++..... +. .+..+ ..+......++++..++.-++.++.
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 2357899999998888899998864321 10 00111 1222333455566677777778888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 158 ~p~iLlLDEPts~LD~ 173 (343)
T PRK11153 158 NPKVLLCDEATSALDP 173 (343)
T ss_pred CCCEEEEeCCcccCCH
Confidence 8888888898888886
No 43
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.5e-14 Score=146.81 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=114.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
.|++++++.+.|. +...+|++|+|.+++|| +|+|+|+||||||||+++|.++. |+.|.|.+++...
T Consensus 2 ~~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~ 75 (258)
T COG3638 2 MMIEVKNLSKTYP---GGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75 (258)
T ss_pred ceEEEeeeeeecC---CCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHH
Confidence 4788999999884 56789999999999999 99999999999999999999987 8999999999632
Q ss_pred ---cccccccccCCCCCCchhhHHHHHHhhhcccc------------------------cccccc-ccccccccccceee
Q 006094 104 ---SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------------------VQVPIY-DFKSSSRIGYRTLE 155 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~------------------------I~~P~y-d~~~~~r~~~~~~~ 155 (661)
.++.+++.||++++.+..++.+|+..-+-+.. +..-.+ -....+.+++++.+
T Consensus 76 lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQR 155 (258)
T COG3638 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQR 155 (258)
T ss_pred HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHH
Confidence 23468999999999999999999864332211 000001 11223456778889
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.++.++=++-+++.||+...+|.
T Consensus 156 VaIARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 156 VAIARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred HHHHHHHhcCCCEEecCCcccccCh
Confidence 9999999999999999999888886
No 44
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.48 E-value=2e-14 Score=156.52 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=112.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----c
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----S 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~ 104 (661)
..++++.++.+.| +.+.++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... .
T Consensus 12 ~~~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 12 SPLVELRGISKSF----DGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred CceEEEEEEEEEE----CCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 4578888887776 34678999999999999 99999999999999999999998 7899999999743 2
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.+.++++||++.+|+..++.+|+..... +. . +.. +..+...+..++++..++.-++.++.++.
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3568999999999999999999974221 10 0 011 12344445566677788888888899998
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 165 llLLDEP~s~LD~ 177 (375)
T PRK09452 165 VLLLDESLSALDY 177 (375)
T ss_pred EEEEeCCCCcCCH
Confidence 8888999888886
No 45
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.48 E-value=1.9e-14 Score=155.50 Aligned_cols=142 Identities=19% Similarity=0.162 Sum_probs=112.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----cc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SS 105 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~ 105 (661)
.++++.++.+.| +.+.++++++|.+++|+ +++|.||||||||||+++|+++. |+.|.|.+||... ..
T Consensus 3 ~~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRF----GAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK 75 (353)
T ss_pred cEEEEEEEEEEe----CCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH
Confidence 367788887777 34678999999999999 99999999999999999999998 8999999999743 23
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhcccc----------------ccc-cccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~~----------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.++++||++.+|++.++.+|+..-..... +.. +..+...+..++++..++.-++.++.++.+
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 568999999999999999999974321100 001 123444555667777888888888889988
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 156 lLLDEP~s~LD~ 167 (353)
T TIGR03265 156 LLLDEPLSALDA 167 (353)
T ss_pred EEEcCCcccCCH
Confidence 888999888886
No 46
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=2.9e-14 Score=154.10 Aligned_cols=142 Identities=24% Similarity=0.210 Sum_probs=112.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----cc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SS 105 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~ 105 (661)
.++++.++++.| +.+.+++++||.+++|+ +++|+||||||||||+++|+++. |+.|.|.+||... ..
T Consensus 5 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRF----GSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred cEEEEEeEEEEE----CCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH
Confidence 377888888777 34678999999999999 99999999999999999999998 8999999999742 23
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--c--c-----c-------ccc-cccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G--K-----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g--~-----~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.++++||++.+|+..++.+|+..-.. + . . +.. ...+...+..++++..++.-++.++.++.+
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 568999999999999999999974221 1 0 0 011 112344455667777888888888889888
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 158 LLLDEP~s~LD~ 169 (351)
T PRK11432 158 LLFDEPLSNLDA 169 (351)
T ss_pred EEEcCCcccCCH
Confidence 888999888886
No 47
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=3.4e-14 Score=153.81 Aligned_cols=142 Identities=19% Similarity=0.204 Sum_probs=111.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++.+.|. +.+.+|+++||.+++|+ +++|.||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 3 ~l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYD---GKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADR 76 (356)
T ss_pred EEEEEeEEEEeC---CCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 567778777762 33568999999999999 99999999999999999999998 8999999999743 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccc-----c-----------ccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK-----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~-----~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+....... . +.. ...+...+..++++.+++.-++.++.++.++
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 6899999999999999999997432110 0 011 1234444556677788888888899999999
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 157 LLDEP~s~LD~ 167 (356)
T PRK11650 157 LFDEPLSNLDA 167 (356)
T ss_pred EEeCCcccCCH
Confidence 99999988886
No 48
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.46 E-value=5.3e-14 Score=149.07 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=109.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++.+.| +...++++|||.+++|+ ++||+||||||||||+++|++++ |+.|.+.++|+...
T Consensus 5 ~~~i~i~~l~k~~----~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRY----GDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEE----CCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 4578888888877 34679999999999999 99999999999999999999998 89999999997432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc--ccc--------------ccc-cccccccccccccceeeccCccEEEEEe
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++++|++..++..++.+++..... +.. +.. +..+...+..++++..++.-+..++.++
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 2458999999999988899999864321 100 000 1122223344455666677777888888
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 158 ~lllLDEPt~gLD~ 171 (306)
T PRK13537 158 DVLVLDEPTTGLDP 171 (306)
T ss_pred CEEEEeCCCcCCCH
Confidence 88888999888886
No 49
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.45 E-value=3.9e-14 Score=139.79 Aligned_cols=142 Identities=21% Similarity=0.206 Sum_probs=113.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
|+++.++++.|.- | ..+|++|||.+++|+ ++-|+||||||||||++.|.+.. |+.|.|.+++++.
T Consensus 1 mI~f~~V~k~Y~~--g-~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPG--G-REALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCC--C-chhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccccc
Confidence 5678888888843 3 679999999999999 99999999999999999999988 9999999999842
Q ss_pred --cccccccccCCCCCCchhhHHHHHHhhhc--cc---ccccc------------ccccccccccccceeeccCccEEEE
Q 006094 104 --SSRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---AVQVP------------IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 104 --~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---~I~~P------------~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.++.++++||+..+++..++++|++.-.. |. .+... ....-+.+.+++++++++.++.++-
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 23568999999999999999999975322 11 11100 0122233456778888999999999
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
.+.+++.||+...+|.
T Consensus 155 ~P~vLlADEPTGNLDp 170 (223)
T COG2884 155 QPAVLLADEPTGNLDP 170 (223)
T ss_pred CCCeEeecCCCCCCCh
Confidence 9999999999988885
No 50
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=4.7e-14 Score=153.79 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=112.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----c
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----S 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~ 104 (661)
..++++.++.+.| +.+.++++++|.+++|+ +++|.||||||||||+++|+++. |+.|.|.++|... .
T Consensus 17 ~~~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSF----DGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 4578888888877 34578999999999999 99999999999999999999998 8899999999743 2
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc-cc--------c-------ccc-cccccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~-g~--------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.+.++++||++.+|++.++.+|+..... .+ . +.. +..+...+..++++.+++.-++.++.++.
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3468999999999999999999974321 10 0 011 12344445566677788888888888888
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 170 lLLLDEP~s~LD~ 182 (377)
T PRK11607 170 LLLLDEPMGALDK 182 (377)
T ss_pred EEEEeCCcccCCH
Confidence 8888999888886
No 51
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.44 E-value=4.3e-14 Score=144.05 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=128.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++++.| |...|++++||.+++|+ ++||+|||||||||+.++|.+.+ |+.|.|.++|....
T Consensus 3 ~lL~v~~l~k~F----GGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRF----GGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeec----CCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHH
Confidence 456677777777 88999999999999999 99999999999999999999999 99999999997422
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc--c---cccccccc------------------------ccccccccccce
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KAVQVPIY------------------------DFKSSSRIGYRT 153 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~~I~~P~y------------------------d~~~~~r~~~~~ 153 (661)
+..+...||.+..|+.+++.||+.--.. . .....|.+ +...+....+++
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 2345678999999999999999853211 0 01111111 111111222333
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCc
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~A 233 (661)
..+..++.+..++.+++.||+...+.. .+..-+..+.|++.+++ ..+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~-------~e~~~l~~~i~~i~~~~--------------------------g~t 202 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNP-------EETEELAELIRELRDRG--------------------------GVT 202 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCH-------HHHHHHHHHHHHHHhcC--------------------------CcE
Confidence 344445555666666666665554443 22222222233332211 133
Q ss_pred eEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHc
Q 006094 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 270 (661)
Q Consensus 234 DIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~ 270 (661)
=++|.++++..-+.++.++++..+..+..+.=.++..
T Consensus 203 illIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 203 ILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 4677777777788888888888776554443334333
No 52
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=9.6e-14 Score=138.57 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=110.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----c-ccc-------ccc-cccCCCCCCchhhHHHHH----Hhh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----D-SSR-------IID-GNFDDPRLTDYDTLLENI----RGL 130 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~-~~~-------~i~-~~fq~p~~~d~~tl~enL----~~L 130 (661)
+|||+|++||||||+++.+.+. +...|+.|... . ... .++ -.++....+|...+.+.+ ..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 4899999999999999999875 56678887751 1 110 111 123333456666555544 223
Q ss_pred hccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHH
Q 006094 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (661)
Q Consensus 131 ~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeV 210 (661)
+.-+.+.+|........... .....+++++|.+++++..+...||..|||++|.++|+.|.+.| +|.+.+++
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISR----DGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 33456777765444332221 11224689999999999888899999999999999987777666 48899999
Q ss_pred HHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
..++..+ .| +++.+..||+||.|+++++
T Consensus 151 ~~ri~~Q-~~-----~~~k~~~aD~vI~N~~~~~ 178 (196)
T PRK14732 151 LARIASQ-LP-----ITEKLKRADYIVRNDGNRE 178 (196)
T ss_pred HHHHHHc-CC-----HHHHHHhCCEEEECCCCHH
Confidence 9988553 33 3455789999999988553
No 53
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=1.7e-13 Score=136.53 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=108.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc----ccc--------ccc-cccCCCC-CCchhhHHHHH----H
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSR--------IID-GNFDDPR-LTDYDTLLENI----R 128 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~----~~~--------~i~-~~fq~p~-~~d~~tl~enL----~ 128 (661)
.+|||+|+.||||||+++.|...+ +...++.|.... ... .++ -.+.... .+|...+.+.+ .
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 479999999999999999999975 466888887521 000 011 1222233 45554444433 1
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
.+..-+.+.+|........... .....+++++|.+++++..+...||.+|||++|.++|+.|.+.|+ |.+.+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 2222345666643333222211 122346899999999998999999999999999999887777664 88999
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
++.+++..+ +|. ++.+..||+||.|+++.
T Consensus 153 ~~~~ri~~Q-~~~-----~~k~~~aD~vI~N~g~~ 181 (195)
T PRK14730 153 EAEARINAQ-WPL-----EEKVKLADVVLDNSGDL 181 (195)
T ss_pred HHHHHHHhC-CCH-----HHHHhhCCEEEECCCCH
Confidence 988888543 343 34568899999999855
No 54
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.43 E-value=5.9e-14 Score=145.27 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=111.1
Q ss_pred ceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------ccccccccc
Q 006094 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNF 112 (661)
Q Consensus 41 ~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~f 112 (661)
+.+++.++...+++++||.+++|+ +++|+||||||||||+|+|++++ |..|.|.+||... ..+.++|++
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 345566678899999999999999 99999999999999999999999 7999999999732 234577888
Q ss_pred CCCCCCchhhHHHHHHhhhcc----------c----------cccc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 113 DDPRLTDYDTLLENIRGLKEG----------K----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 113 q~p~~~d~~tl~enL~~L~~g----------~----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
|.+......++.+.+..-+.- + .... ..-++.....++++.+++-.++.+.=+..+++.
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 876554445555544321100 0 0000 011222344555666666666777777778888
Q ss_pred ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 172 deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
||+...+|+. ....+..-+++...++|.+.-.++|..
T Consensus 163 DEPTs~LDi~------~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 163 DEPTSHLDIA------HQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred CCCccccCHH------HHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 8999888874 344444444444446687766555554
No 55
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=3.1e-13 Score=135.16 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=109.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc-----cccc-------cccccccCC-CCCCchhhHHHHH----Hh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-----NDSS-------RIIDGNFDD-PRLTDYDTLLENI----RG 129 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~-----~~~~-------~~i~~~fq~-p~~~d~~tl~enL----~~ 129 (661)
++|||+|++||||||+++.|+.. +..+|+.|.. .... ..++..+.+ ...+|...+.+.+ ..
T Consensus 2 ~~igitG~igsGKst~~~~l~~~--g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSSE--GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 58999999999999999999984 5668888763 1111 112332322 3455655555443 22
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
+..-+.+.+|........... ........++++|.+++++..+...||.+|||++|.++++.|.+.| +|.+.++
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~--~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~s~e~ 153 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFN--EARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEK----RGLDEDD 153 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHH--HHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 333456777765333322211 1111234789999999999889899999999999999876554444 5899999
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
+.+++..+..+.+. +..||+||.|+++++
T Consensus 154 ~~~ri~~Q~~~~~k------~~~ad~vI~N~g~~e 182 (200)
T PRK14734 154 ARRRIAAQIPDDVR------LKAADIVVDNNGTRE 182 (200)
T ss_pred HHHHHHhcCCHHHH------HHhCCEEEECcCCHH
Confidence 99998665444332 478999999988653
No 56
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=4.4e-13 Score=134.81 Aligned_cols=163 Identities=11% Similarity=0.091 Sum_probs=109.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----cccc-------cccc-ccCCCCCCchhhHHHHHH----
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSR-------IIDG-NFDDPRLTDYDTLLENIR---- 128 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~~~~-------~i~~-~fq~p~~~d~~tl~enL~---- 128 (661)
.|++|||+|+.||||||+++.|...+ +..+++.|... .... ..+- .++ ...+|...+.+.+-
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHH
Confidence 46789999999999999999999765 45578777651 1110 0111 111 24466655555442
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccc--cCCCCEEEEEEcCchhHHHHHHHHHHHhhCCC
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL--r~llDlkIfVdad~diRLiRRI~RDi~eRG~s 206 (661)
.+..-+.+.+|........... .....++++|.+++|+..+ ...||..|+|++|.++|+.|-+.| +|.+
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~-----~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~s 153 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVK-----ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMER----DGKN 153 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH-----hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence 2333456777865544432221 1134689999999998654 578999999999998876655544 4889
Q ss_pred HHHHHHHHHhhcccchhhccCCCCCCceEEEECCC-CCC
Q 006094 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF-NPF 244 (661)
Q Consensus 207 ~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~-~p~ 244 (661)
.+++..++..+ +|..++ ++.||+||.|++ +..
T Consensus 154 ~~~a~~ri~~Q-~~~eek-----~~~aD~VI~N~g~~~~ 186 (204)
T PRK14733 154 RQQAVAFINLQ-ISDKER-----EKIADFVIDNTELTDQ 186 (204)
T ss_pred HHHHHHHHHhC-CCHHHH-----HHhCCEEEECcCCCHH
Confidence 99998888544 444333 589999999998 553
No 57
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.42 E-value=1.6e-13 Score=147.74 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=107.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++++.| +...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 39 ~~~i~i~nl~k~y----~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSY----GDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHH
Confidence 3467888888877 45679999999999999 99999999999999999999998 89999999997432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc--ccc--------------cccc-ccccccccccccceeeccCccEEEEEe
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++++|++..++..++.+++..... +.. ...+ ..+...+..++++..++.-+..++.++
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2457899999999888899998864321 110 0011 122223334455556666677777788
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 192 ~lLiLDEPt~gLD~ 205 (340)
T PRK13536 192 QLLILDEPTTGLDP 205 (340)
T ss_pred CEEEEECCCCCCCH
Confidence 88888888888886
No 58
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=7.9e-14 Score=147.16 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=117.4
Q ss_pred eeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 33 RYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
++++.++.+.| + ...+|++|||.+++|+ ++|+.|||||||||++++|++++ |+.|.|.++|....
T Consensus 4 ~i~~~~l~k~~----~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKY----GGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEe----CCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHH
Confidence 45566777776 5 5789999999999999 99999999999999999999999 89999999997433
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccccc----------------ccccc-ccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----------------QVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I----------------~~P~y-d~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.+.++|++|+|..++..++.+++..+..-... ..+.+ +......+.++..++.-+..++-++.
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 24589999999999999999999754321110 11111 11122233445555666677888888
Q ss_pred hhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhC
Q 006094 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (661)
Q Consensus 168 laL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG 204 (661)
+++.||+...+|. ......+.+.|+..++|
T Consensus 157 lliLDEPt~GLDp-------~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 157 LLILDEPTSGLDP-------ESRREIWELLRELAKEG 186 (293)
T ss_pred EEEECCCCcCCCH-------HHHHHHHHHHHHHHhCC
Confidence 8888999999886 34455667777777666
No 59
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.42 E-value=1.4e-13 Score=149.24 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=111.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCc--eEEecCCccc-----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYND----- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~--g~I~lD~~~~----- 103 (661)
..+++.++.+.| +...++++++|.+.+|+ +++|+||||||||||+++|++++ |+. |.|.++|...
T Consensus 4 ~~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 4 GGIRIDHLRVAY----GANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP 76 (362)
T ss_pred eEEEEEEEEEEE----CCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH
Confidence 356777877776 34579999999999999 99999999999999999999998 788 9999999743
Q ss_pred cccccccccCCCCCCchhhHHHHHHhhhc-cc--------c-------ccc-cccccccccccccceeeccCccEEEEEe
Q 006094 104 SSRIIDGNFDDPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 104 ~~~~i~~~fq~p~~~d~~tl~enL~~L~~-g~--------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
..+.++++||++.+|+..++.+|+..... .. . +.. ...+...+..++++..++.-++.++.++
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P 156 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEP 156 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 13468999999999999999999974221 10 0 001 1234445556667778888888888899
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 157 ~llLLDEP~s~LD~ 170 (362)
T TIGR03258 157 DVLLLDEPLSALDA 170 (362)
T ss_pred CEEEEcCccccCCH
Confidence 99888999888886
No 60
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.41 E-value=1.9e-13 Score=147.85 Aligned_cols=141 Identities=22% Similarity=0.221 Sum_probs=108.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~ 106 (661)
++++.++.+.| +...+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.+||.... .+
T Consensus 2 ~L~i~~l~~~~----~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSF----GRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEe----CCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHC
Confidence 46677777666 34679999999999999 99999999999999999999998 88999999997431 24
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc------cc--------------ccccc-ccccccccccccceeeccCccEEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE------GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~------g~--------------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.++++||++.+|+..++.+|+..... +. .+..+ ..+...+..++++..++.-++.++.+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 68899999999999999999974211 00 01111 12333444566677778888888888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 155 P~llLLDEP~s~LD~ 169 (353)
T PRK10851 155 PQILLLDEPFGALDA 169 (353)
T ss_pred CCEEEEeCCCccCCH
Confidence 888888999888886
No 61
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=4.6e-13 Score=137.42 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=109.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
|+++.++...|. .+ ..++++++|.+++|+ .++|+|+|||||||+++.|.+++ |..|.|.++|...
T Consensus 3 ~i~~~~l~~~y~--~~-~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 3 MIEAENLSFRYP--GR-KAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred eEEEEEEEEEcC--CC-ceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 555555555442 22 689999999999999 99999999999999999999999 8889999998642
Q ss_pred cccccccccCCCCC-CchhhHHHHHHhhhccccccc-----------------cccccccccccccceeeccCccEEEEE
Q 006094 104 SSRIIDGNFDDPRL-TDYDTLLENIRGLKEGKAVQV-----------------PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 104 ~~~~i~~~fq~p~~-~d~~tl~enL~~L~~g~~I~~-----------------P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.++.++++||+|+. |-..++.+.++....+..+.. ...++.++..++++..+++.+.+++++
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 24568999999954 444567777764332211100 114666777888889999999999999
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+-+++.||+...+|.
T Consensus 157 P~iliLDEPta~LD~ 171 (235)
T COG1122 157 PEILLLDEPTAGLDP 171 (235)
T ss_pred CCEEEEcCCCCCCCH
Confidence 999999999999997
No 62
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.41 E-value=6.4e-13 Score=131.97 Aligned_cols=162 Identities=21% Similarity=0.216 Sum_probs=108.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc----ccc--------cccc-ccCCCCCCchhhHHHHHH----
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSR--------IIDG-NFDDPRLTDYDTLLENIR---- 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~----~~~--------~i~~-~fq~p~~~d~~tl~enL~---- 128 (661)
+.+|||+|++||||||+++.|.. + +...|+.|.... ... .++- .+.....+|...+.+.+-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 46899999999999999999998 4 567888887521 010 0111 222234456555554442
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
.+..-+.+.+|........... .....+++++|++++++..+...||..|+|++|.++++.|-..| +|.+.+
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~~----~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~e 151 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQLQ----EAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMAR----DGLSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 2333456677765444332221 11223799999999999999999999999999998876555444 488888
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
++..++.. ..+.. .....||+||.|++++
T Consensus 152 ~~~~ri~~-Q~~~~-----~~~~~ad~vI~N~g~~ 180 (194)
T PRK00081 152 EAEAIIAS-QMPRE-----EKLARADDVIDNNGDL 180 (194)
T ss_pred HHHHHHHH-hCCHH-----HHHHhCCEEEECCCCH
Confidence 88887754 34432 2356899999998754
No 63
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.40 E-value=2.9e-13 Score=145.10 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=112.2
Q ss_pred hcccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCC
Q 006094 25 LVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDN 100 (661)
Q Consensus 25 l~~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~ 100 (661)
+..+....++++.++...|....+...+++++||.+.+|+ ++||+|+||||||||+++|++++ |. .|.|.++|
T Consensus 4 ~~~~~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G 80 (330)
T PRK09473 4 LAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG 80 (330)
T ss_pred cccCCCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC
Confidence 4445556689999999988655556789999999999999 99999999999999999999998 54 89999999
Q ss_pred cccc-----------ccccccccCCC--CCCchhhHHHHHHh-h--hcc--------------cccccc----ccccccc
Q 006094 101 YNDS-----------SRIIDGNFDDP--RLTDYDTLLENIRG-L--KEG--------------KAVQVP----IYDFKSS 146 (661)
Q Consensus 101 ~~~~-----------~~~i~~~fq~p--~~~d~~tl~enL~~-L--~~g--------------~~I~~P----~yd~~~~ 146 (661)
.... .+.++++||++ .+++..++.+++.. + ..+ +.+..+ .++...+
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 7421 13578999998 45555666655532 1 000 011112 1233455
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++++..++..+..++.++.+++.||+...+|.
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 6666777777778888888888888999988886
No 64
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2e-13 Score=148.39 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=108.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++.+.| +...+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 3 ~l~i~~l~~~~----~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAY----GDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER 75 (369)
T ss_pred EEEEEEEEEEe----CCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHC
Confidence 46777777766 34578999999999999 99999999999999999999998 8899999998642 124
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+..... +. .+.. ...+...+..++++..++.-++.++.++.++
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 58899999999999999999864221 10 0111 1123334455667777788888888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 156 LLDEPts~LD~ 166 (369)
T PRK11000 156 LLDEPLSNLDA 166 (369)
T ss_pred EEeCCcccCCH
Confidence 88999888886
No 65
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.40 E-value=4.8e-13 Score=134.33 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=105.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----cc-c---c----cccc-cc--CCCC--CCchhhHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-S---R----IIDG-NF--DDPR--LTDYDTLLEN 126 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~~-~---~----~i~~-~f--q~p~--~~d~~tl~en 126 (661)
..+++|||+|++||||||+++.|.++ +..+++.|... .. . . .++. .+ +... .+|...+.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~--g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~ 80 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM--GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQV 80 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHH
Confidence 35689999999999999999999985 56677777431 00 0 0 1111 11 1111 1444443332
Q ss_pred H----HhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh
Q 006094 127 I----RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (661)
Q Consensus 127 L----~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e 202 (661)
+ ..+..-+.+.+|........... .......+++++|+++++...+...||..|+|++|.+++..|.+.|+
T Consensus 81 vf~~~~~~~~l~~i~hp~i~~~~~~~i~--~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~--- 155 (208)
T PRK14731 81 VFSDPEKLGALNRLIHPKVFAAFQRAVD--RAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRG--- 155 (208)
T ss_pred HhCCHHHHHHHHHHHCHHHHHHHHHHHH--HHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcC---
Confidence 2 22333455667754332222111 11123347899999999988888899999999999999777766653
Q ss_pred hCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 203 RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
+.+.+++..++.. .++..+. ...||++|.|+++++
T Consensus 156 -~~s~e~~~~Ri~~-q~~~~~~-----~~~ad~vI~N~g~~e 190 (208)
T PRK14731 156 -MGSREEIRRRIAA-QWPQEKL-----IERADYVIYNNGTLD 190 (208)
T ss_pred -CCCHHHHHHHHHH-cCChHHH-----HHhCCEEEECCCCHH
Confidence 5688888888744 3444322 246999999988553
No 66
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.40 E-value=2.6e-13 Score=143.32 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=106.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++++.| +...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 3 ~~i~~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 3 VAIDLVGVSKSY----GDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA 75 (303)
T ss_pred cEEEEEeEEEEe----CCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHH
Confidence 467888887776 34579999999999999 99999999999999999999998 88999999986421
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc--ccc--------------cccc-ccccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.+.+++++|++..++..++.+++..... +.. ...+ ..+...+..++++..++.-+..++.++.
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 2457899999988888888888853211 100 0011 1223334445566666777777888888
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 156 lllLDEPt~gLD~ 168 (303)
T TIGR01288 156 LLILDEPTTGLDP 168 (303)
T ss_pred EEEEeCCCcCCCH
Confidence 8888898888886
No 67
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.39 E-value=8.5e-13 Score=136.14 Aligned_cols=168 Identities=19% Similarity=0.142 Sum_probs=109.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----ccc----c----cccc-ccCCCCCCchhhHHHHH----H
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSS----R----IIDG-NFDDPRLTDYDTLLENI----R 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~~~----~----~i~~-~fq~p~~~d~~tl~enL----~ 128 (661)
+++|||+|+.||||||+++.|.+.+ +..+|+.|... ... . .++- .......+|...+.+.+ .
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ 79 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence 4689999999999999999999854 45688888751 111 0 1111 22223456666665544 2
Q ss_pred hhhcccccccccccccccccccc-------ceeeccCccEEEEEehhhhhccc-cCCCCEEEEEEcCchhHHHHHHHHHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGY-------RTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDI 200 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~-------~~~~v~~a~VVIVEGilaL~deL-r~llDlkIfVdad~diRLiRRI~RDi 200 (661)
.++.-+.+.+|............ .........++++|.+++|+..+ ...||..|+|++|.++++.|-+.|
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R-- 157 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKR-- 157 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHc--
Confidence 23344567777543332211110 00111223599999999999775 468899999999998876664433
Q ss_pred HhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC--CCCC
Q 006094 201 QRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK--FNPF 244 (661)
Q Consensus 201 ~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~--~~p~ 244 (661)
+|.+.+++.+++..+ .|..+ .+..||+||.|+ ++++
T Consensus 158 --~g~s~eea~~Ri~~Q-~~~~e-----k~~~aD~VI~N~~~g~~~ 195 (244)
T PTZ00451 158 --NGFSKEEALQRIGSQ-MPLEE-----KRRLADYIIENDSADDLD 195 (244)
T ss_pred --CCCCHHHHHHHHHhC-CCHHH-----HHHhCCEEEECCCCCCHH
Confidence 588999999998654 34322 358899999999 8664
No 68
>PLN02796 D-glycerate 3-kinase
Probab=99.39 E-value=2e-12 Score=138.80 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=121.8
Q ss_pred EEEeecccee---ccC--CcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCccccccc-cccccCC------
Q 006094 51 IVIRACQLLA---QKN--HGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFDD------ 114 (661)
Q Consensus 51 ~vL~~Isl~i---~~g--e~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~~~~-i~~~fq~------ 114 (661)
.+++.+++.+ ++| .+|++|||+|++||||||+++.|.+.+. ..+.|++|+++..... .....++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 4577888776 333 3579999999999999999999999983 3789999999753321 1122233
Q ss_pred -----CCCCchhhHHHHHHhhh----ccccccccccccccccccccc------eeeccCccEEEEEehhhhh-c------
Q 006094 115 -----PRLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSSRIGYR------TLEVPSSRIVIIEGIYALS-E------ 172 (661)
Q Consensus 115 -----p~~~d~~tl~enL~~L~----~g~~I~~P~yd~~~~~r~~~~------~~~v~~a~VVIVEGilaL~-d------ 172 (661)
|..+|...+.+++..++ .+..+..|.||+..+...+.+ .....+.+|||+||+++.. +
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l 239 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAV 239 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHh
Confidence 45678888898888887 578999999999997633211 1233678999999999875 1
Q ss_pred -------------------cccCCCCEEEEEEcC-chhHHHHHHHHHHH-----hhCCCHHHHHHHHHhhcccchhhcc
Q 006094 173 -------------------KLRPLIDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 226 (661)
Q Consensus 173 -------------------eLr~llDlkIfVdad-~diRLiRRI~RDi~-----eRG~s~EeVi~q~~~~v~P~~~~fI 226 (661)
.+...+|..|.+.++ .+.-..+|++...+ ..|.+-++|.+ +.+..+|.|+.|.
T Consensus 240 ~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~-FV~~~mP~y~~y~ 317 (347)
T PLN02796 240 KAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVAD-FVSRYMPAYKAYL 317 (347)
T ss_pred hccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHH
Confidence 123367888888876 33344455544431 13577777544 5577789888764
No 69
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.38 E-value=4e-13 Score=134.27 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=105.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.+++..|. .+...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ~l~~~~l~~~~~--~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYP--GGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEec--CCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHH
Confidence 456777776662 222468999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++..++..++.+++..... +. .+.. +..+...+..++++..++.-++.++.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 2357889999988888888888863211 10 0111 11223334455566677777888888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 156 ~p~llllDEPt~~LD~ 171 (216)
T TIGR00960 156 KPPLLLADEPTGNLDP 171 (216)
T ss_pred CCCEEEEeCCCCcCCH
Confidence 8888888999888886
No 70
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.38 E-value=4.2e-13 Score=143.94 Aligned_cols=147 Identities=17% Similarity=0.216 Sum_probs=112.0
Q ss_pred Cceeeeecccceeeecc---------CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCC
Q 006094 31 SDRYEIVPIEDTLSFEK---------GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~---------g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~ 100 (661)
..++++.++...|.... +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECC
Confidence 45789999999885322 24679999999999999 99999999999999999999998 7899999999
Q ss_pred cccc----------ccccccccCCC--CCCchhhHHHHHHhhhc----c--------------ccccc-c-ccccccccc
Q 006094 101 YNDS----------SRIIDGNFDDP--RLTDYDTLLENIRGLKE----G--------------KAVQV-P-IYDFKSSSR 148 (661)
Q Consensus 101 ~~~~----------~~~i~~~fq~p--~~~d~~tl~enL~~L~~----g--------------~~I~~-P-~yd~~~~~r 148 (661)
.... .+.++++||+| .+++..++.+++..... + +.+.. + ..+...+..
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 7421 23578999998 46777788888753110 0 01112 1 234555666
Q ss_pred cccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 149 ~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++++.+++..+..++.++.+++.||+...+|.
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 77777778888888888888888999988886
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=4e-13 Score=135.78 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=102.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.+++..|....+...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 45667777666311111379999999999999 99999999999999999999998 78999999987421
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--ccc--------------cccc-ccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++..|+..++.+++..... +.. ...+ ..+......++++..++.-+..++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 2347889999998888888888753211 100 0011 1122223344455666666777777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 158 ~p~lllLDEP~~~LD~ 173 (233)
T cd03258 158 NPKVLLCDEATSALDP 173 (233)
T ss_pred CCCEEEecCCCCcCCH
Confidence 7778888888888886
No 72
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.38 E-value=3.5e-13 Score=151.13 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=117.8
Q ss_pred Cceeeeecccceeeec-------cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc
Q 006094 31 SDRYEIVPIEDTLSFE-------KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~-------~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~ 102 (661)
..++++.++.+.|... .+...++++|||.+.+|+ ++||+|+|||||||+++.|++++ |+.|.|.++|..
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 4577899999999742 245789999999999999 99999999999999999999999 899999998864
Q ss_pred ---------ccccccccccCCCC--CCchhhHHHHHHhhhc---c--------------cccccc--ccccccccccccc
Q 006094 103 ---------DSSRIIDGNFDDPR--LTDYDTLLENIRGLKE---G--------------KAVQVP--IYDFKSSSRIGYR 152 (661)
Q Consensus 103 ---------~~~~~i~~~fq~p~--~~d~~tl~enL~~L~~---g--------------~~I~~P--~yd~~~~~r~~~~ 152 (661)
...+.+.++||+|. +.+..++.+.+..-.. . ..+..| ..+...|+.++++
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 11234678899975 4677788777753211 0 012222 4677888899999
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCEE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (661)
.++++.++.++.++-+++.||+...+|..
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 99999999999999999999999988863
No 73
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=5.9e-13 Score=134.87 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=102.0
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------- 104 (661)
++.+++..| +...+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 2 ELRGLTKSF----GGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred eEEEEEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 344555444 34579999999999999 99999999999999999999998 78999999986321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc---cc---c-----------cccc-ccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE---GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~---g~---~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.+++++|++..|+..++.+++..... +. . +..+ ..+...+..++++..++.-+..++.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 2347889999988888899988854211 00 0 0011 11223334555666777777888888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 155 p~llllDEPt~~LD~ 169 (235)
T cd03261 155 PELLLYDEPTAGLDP 169 (235)
T ss_pred CCEEEecCCcccCCH
Confidence 888888999988886
No 74
>PLN02422 dephospho-CoA kinase
Probab=99.37 E-value=1.1e-12 Score=134.34 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=110.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc----cc--------ccccc-ccCCCCCCchhhHHHHH----Hh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS--------RIIDG-NFDDPRLTDYDTLLENI----RG 129 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~----~~--------~~i~~-~fq~p~~~d~~tl~enL----~~ 129 (661)
.+|||+|+.||||||+++.|... +...|+.|.... .. ..+|- .+.....+|...+.+.+ ..
T Consensus 2 ~~igltG~igsGKstv~~~l~~~--g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKSS--GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 47999999999999999999964 667888887511 10 01111 22334456666655544 22
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
++.-+.+.+|........... .......+++++|.+++|+..+...||..|+|++|.++++.|-+.|+ |.+.++
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee 153 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ 153 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 344456778865433322111 01112347999999999998899999999999999988766655553 889999
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
+..++. ...|... ....||+||.|+++.+
T Consensus 154 a~~Ri~-~Q~~~ee-----k~~~AD~VI~N~gs~e 182 (232)
T PLN02422 154 ARNRIN-AQMPLDW-----KRSKADIVIDNSGSLE 182 (232)
T ss_pred HHHHHH-HcCChhH-----HHhhCCEEEECCCCHH
Confidence 888873 4344432 2578999999998553
No 75
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=6.6e-13 Score=134.51 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=105.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
+|+++.++...|........+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 477888887776422112569999999999999 99999999999999999999998 78999999986321
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhhc--c---cc-----------cccc-ccccccccccccceeeccCccEE
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
.+.++++||++..|+..++.+++..... + .. ...+ ..+...+..++++..++.-+..+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1347889999988887788888754210 1 00 0011 11222333445566666677777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 161 ~~~p~lllLDEPt~~LD~ 178 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDA 178 (233)
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 778888888888888886
No 76
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.7e-13 Score=156.22 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=140.0
Q ss_pred CCCCCCCcccccccchhhhcccC------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHH
Q 006094 7 SGADSPRRRPGLLRDQVQLVKKK------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (661)
Q Consensus 7 ~~~~s~~r~~~ll~~~~~l~~~~------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (661)
+|+...+|++++++.+|++.... ....++..+++..|... ....++++++|++++|+ +++|+||||||||
T Consensus 433 kgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe---~vALVGPSGsGKS 508 (716)
T KOG0058|consen 433 KGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGE---VVALVGPSGSGKS 508 (716)
T ss_pred HhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCC-CCchhhcCceeeeCCCC---EEEEECCCCCCHH
Confidence 68889999999999999988772 23357788888777433 35689999999999999 9999999999999
Q ss_pred HHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc----------------cc
Q 006094 81 VFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AV 136 (661)
Q Consensus 81 TLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I 136 (661)
|++..|..++ |..|.|.+||... .++.++++-|+|-+|. -++.||+..-.... .|
T Consensus 509 TiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI 587 (716)
T KOG0058|consen 509 TIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFI 587 (716)
T ss_pred HHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHH
Confidence 9999999998 9999999999832 2456899999999987 46777775322210 01
Q ss_pred -ccc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHH
Q 006094 137 -QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (661)
Q Consensus 137 -~~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeV 210 (661)
..| -|+-..+. .++++.++++.++.++-++..++.||-...+|. +.+.+.+....... .++|.--|
T Consensus 588 ~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa-------eSE~lVq~aL~~~~-~~rTVlvI 659 (716)
T KOG0058|consen 588 TNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA-------ESEYLVQEALDRLM-QGRTVLVI 659 (716)
T ss_pred HhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch-------hhHHHHHHHHHHhh-cCCeEEEE
Confidence 112 24444333 356778888888888888888888887777775 23334443332222 24665555
Q ss_pred HHHH
Q 006094 211 IHQI 214 (661)
Q Consensus 211 i~q~ 214 (661)
.|+.
T Consensus 660 AHRL 663 (716)
T KOG0058|consen 660 AHRL 663 (716)
T ss_pred ehhh
Confidence 5555
No 77
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=6.2e-13 Score=142.37 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=109.1
Q ss_pred CceeeeecccceeeeccC------ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc
Q 006094 31 SDRYEIVPIEDTLSFEKG------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g------~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~ 103 (661)
..++++.++.+.|....+ ...++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 357899999998853322 3579999999999999 99999999999999999999998 7889999999642
Q ss_pred c----------ccccccccCCC--CCCchhhHHHHHHhh-hc--c--------------ccccc--cccccccccccccc
Q 006094 104 S----------SRIIDGNFDDP--RLTDYDTLLENIRGL-KE--G--------------KAVQV--PIYDFKSSSRIGYR 152 (661)
Q Consensus 104 ~----------~~~i~~~fq~p--~~~d~~tl~enL~~L-~~--g--------------~~I~~--P~yd~~~~~r~~~~ 152 (661)
. ++.++++||+| .+++..++.+++... .. + +.+.. ..++...+..++++
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 1 23578999998 355555666555321 00 0 01111 13455666777777
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++..+..++.+..+++.||+...+|.
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 7778888888888888888899888886
No 78
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.36 E-value=8.9e-14 Score=138.37 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=105.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
|+++..++++|.. ...++++|+|.++.|+ ++||.|+|||||||++++|+.++ |+.|.+.+|++... +
T Consensus 1 Ml~v~~l~K~y~~---~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGS---KVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccC---HHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 5778888888832 4458999999999999 99999999999999999999999 99999999998532 3
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhcc-----cccccc------------ccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEG-----KAVQVP------------IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g-----~~I~~P------------~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.++..|..-.+|+.+++.+||.....- ..+... ..+......+.+...++..++.++-++..
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 5688888888899999999999754321 111110 11122222223334456667777777777
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|+
T Consensus 155 ~vlDEP~sGLDi 166 (245)
T COG4555 155 LVLDEPTSGLDI 166 (245)
T ss_pred EEEcCCCCCccH
Confidence 777899888887
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.36 E-value=7.9e-13 Score=134.31 Aligned_cols=142 Identities=20% Similarity=0.221 Sum_probs=102.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.+++..|. +...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 1 ~l~~~~l~~~~~---~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 1 MLEVENLSKVYP---NGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKL 74 (243)
T ss_pred CeEEEeeeeecC---CCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHH
Confidence 356666666652 13568999999999999 99999999999999999999998 78999999986421
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc----------c---c----c-------ccc-cccccccccccccceeec
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE----------G---K----A-------VQV-PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~----------g---~----~-------I~~-P~yd~~~~~r~~~~~~~v 156 (661)
.+.+++++|++..++..++.+++..... + . . +.. ...+......++++..++
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 2347889999988887888888752110 0 0 0 000 011222333445566667
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-+..++.++.+++.||+...+|.
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~ 178 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDP 178 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCH
Confidence 777788888888888999888886
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.36 E-value=8e-13 Score=134.34 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=101.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...| +...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 1 ~l~~~~l~~~~----~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHF----GPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEE----CCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHH
Confidence 35666666665 33578999999999999 99999999999999999999998 78999999996422
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhh---ccc--------------cccc-cccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++.+|++..++..++.+++.... .+. .... +..+......++++..++.-+..++.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 224788999988887778888875311 010 0000 11222333344555666666777777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 154 ~p~llllDEP~~~LD~ 169 (240)
T PRK09493 154 KPKLMLFDEPTSALDP 169 (240)
T ss_pred CCCEEEEcCCcccCCH
Confidence 8888888888888886
No 81
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.36 E-value=7.4e-13 Score=132.37 Aligned_cols=143 Identities=21% Similarity=0.202 Sum_probs=101.9
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------- 104 (661)
++.+++..|....+...+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 345555555211111579999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.+++++|++..|+..++.+++..... +. . ... +..+...+..++++..++.-++.++.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 1347889999988888888888754211 10 0 000 112223334455666667777788888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 159 p~lllLDEP~~~LD~ 173 (218)
T cd03255 159 PKIILADEPTGNLDS 173 (218)
T ss_pred CCEEEEcCCcccCCH
Confidence 888888999888886
No 82
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.35 E-value=1.9e-13 Score=139.34 Aligned_cols=168 Identities=19% Similarity=0.168 Sum_probs=121.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc---ccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---SSRII 108 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~---~~~~i 108 (661)
++++..++++| |.+.|++++||.+++|+ +.|+.|+|||||||..++|.+++ |+.|.|.++|... ....+
T Consensus 2 ~L~ie~vtK~F----g~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSF----GDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhcc----CceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhc
Confidence 46777888887 78899999999999999 99999999999999999999999 8999999999743 33468
Q ss_pred ccccCCCCCCchhhHHHHHHhhhccccccc-------c-------ccccc---cccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV-------P-------IYDFK---SSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~g~~I~~-------P-------~yd~~---~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
+|.+.+-.+++.+++.+.|..+...+.... + .+.+. ....+.+.++++.--.-++-++-++..
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998876543221110 0 01111 111222222222222235556666666
Q ss_pred ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 172 deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
|+++..+|. ..+.+.+....+.+++|.+.--..|++
T Consensus 155 DEPFSGLDP-------VN~elLk~~I~~lk~~GatIifSsH~M 190 (300)
T COG4152 155 DEPFSGLDP-------VNVELLKDAIFELKEEGATIIFSSHRM 190 (300)
T ss_pred cCCccCCCh-------hhHHHHHHHHHHHHhcCCEEEEecchH
Confidence 788888886 678899999999999998754333444
No 83
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.35 E-value=9.2e-13 Score=136.74 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++...| +...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTR----GNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChh
Confidence 3578888887766 34578999999999999 99999999999999999999998 78999999986321
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhh-c--c--c------------ccccc-ccccccccccccceeeccCccE
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK-E--G--K------------AVQVP-IYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~-~--g--~------------~I~~P-~yd~~~~~r~~~~~~~v~~a~V 161 (661)
.+.++++||++..++..++.+++.... . + . .+... ..+...+..++++..++.-++.
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 234788999998888888888875321 0 0 0 00011 1122233445556666777777
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 158 l~~~p~lllLDEPt~~LD~ 176 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDP 176 (269)
T ss_pred HhcCCCEEEEcCCCccCCH
Confidence 7788888888898888886
No 84
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=4.7e-13 Score=138.18 Aligned_cols=143 Identities=17% Similarity=0.129 Sum_probs=104.7
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----ccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----SSR 106 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~----~~~ 106 (661)
.++++.+++..| +...||++|+|.+++|+ +++|+||||||||||+|.|.+++ |..|.|.+.+... ...
T Consensus 3 ~~i~v~nl~v~y----~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~ 75 (254)
T COG1121 3 PMIEVENLTVSY----GNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75 (254)
T ss_pred cEEEEeeeEEEE----CCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCC
Confidence 467777776665 32269999999999999 99999999999999999999988 8999999998742 234
Q ss_pred ccccccCCC--CCCchhhHHHHHHhhh--cc------------------cccccc-ccccccccccccceeeccCccEEE
Q 006094 107 IIDGNFDDP--RLTDYDTLLENIRGLK--EG------------------KAVQVP-IYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 107 ~i~~~fq~p--~~~d~~tl~enL~~L~--~g------------------~~I~~P-~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
.++|++|.. +.--..++.+.+.--. .. +.+..- ..+...+..++++.+++--++.++
T Consensus 76 ~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred eEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 689999865 2111245666654211 00 011111 234455667778888888889999
Q ss_pred EEehhhhhccccCCCCEE
Q 006094 164 IEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 164 VEGilaL~deLr~llDlk 181 (661)
-++-+++.||+...+|.+
T Consensus 156 ~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred cCCCEEEecCCcccCCHH
Confidence 999999999999888873
No 85
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=4.8e-13 Score=130.33 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=121.3
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc------
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------ 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------ 103 (661)
+..+++..+.+++....+...+|++|+|.+++|+ .|+|+||||||||||+-.++++. |+.|.+.+.|...
T Consensus 4 ~~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 (228)
T ss_pred cceeehhhhhhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence 3478889999999888889999999999999999 99999999999999999999997 8999999998732
Q ss_pred -----cccccccccCCCCCCchhhHHHHHHh--hhcccccc---------------ccccccccccccccceeeccCccE
Q 006094 104 -----SSRIIDGNFDDPRLTDYDTLLENIRG--LKEGKAVQ---------------VPIYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 104 -----~~~~i~~~fq~p~~~d~~tl~enL~~--L~~g~~I~---------------~P~yd~~~~~r~~~~~~~v~~a~V 161 (661)
..+.++++||.+.+++.++..||+.- ..+|+... -....+.+++.+++++++++.++.
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 12458999999999999999999863 22231110 123556677788888888999999
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
+..++..+|.||+...+|-
T Consensus 161 fa~~P~vLfADEPTGNLD~ 179 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDR 179 (228)
T ss_pred hcCCCCEEeccCCCCCcch
Confidence 9999999999999888874
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.4e-12 Score=132.70 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=102.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~ 106 (661)
++++.++...| +...+++++||.+.+|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+
T Consensus 2 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRF----GDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEE----CCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccc
Confidence 35677776666 33579999999999999 99999999999999999999998 78999999986421 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc-----------cc-------cc-cccccccccccccceeeccCccEEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK-----------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~-----------~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+++++|++..++..++.+++..... +. .+ .. ...+...+..++++..++.-+..++.+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 57889999988887888888753211 00 00 00 011222233445566666677777778
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 155 p~llllDEP~~~LD~ 169 (239)
T cd03296 155 PKVLLLDEPFGALDA 169 (239)
T ss_pred CCEEEEcCCcccCCH
Confidence 888888888888886
No 87
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.1e-12 Score=131.50 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=102.4
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.++.+.| +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+++.... .+.
T Consensus 2 ~~~~~~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 2 EVENLVKKY----GDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred EEEEEEEEE----CCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 455665555 34579999999999999 99999999999999999999998 78999999986421 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEehhhh
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
++++||++..++..++.+++..... +. . ... +..+...+..++++..++.-+..++.++.+++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999988887888888753211 10 0 001 11223334455566677777788888888888
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 155 lDEPt~~LD~ 164 (220)
T cd03265 155 LDEPTIGLDP 164 (220)
T ss_pred EcCCccCCCH
Confidence 8999888886
No 88
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.34 E-value=5.8e-13 Score=140.62 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=98.6
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccccccccCCCCCCch
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDY 120 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~i~~~fq~p~~~d~ 120 (661)
+...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++|++..++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 44679999999999999 99999999999999999999998 89999999996421 2347899999999988
Q ss_pred hhHHHHHHhhhc--ccc--------------cccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 121 DTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 121 ~tl~enL~~L~~--g~~--------------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.+++..... +.. +..+ ..+...+..++++..++.-+..++-++.+++.||+...+|.
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 899998864221 100 0011 12223334455666677777788888888888999888886
No 89
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.34 E-value=8.1e-12 Score=121.85 Aligned_cols=131 Identities=25% Similarity=0.368 Sum_probs=107.2
Q ss_pred ccccceeeeecCCCCCCcccccceEEEeec-CCeEEEEEeeeecCCCceeeeeeEEEee-----------hhhHHHHhhc
Q 006094 275 ETTEETYDIYLLPPGEDPDACQSYLRMRNR-DGKYNLMFEEWVTDSPFIISPRITFEVS-----------VRLLGGLMAL 342 (661)
Q Consensus 275 ~~~~~~~DIYl~pP~~df~~tde~LRvR~~-dg~~~Ltykgp~~d~~fi~rp~~ef~V~-----------v~~~~gL~~L 342 (661)
.....+.|+||.+|..++...+.|||+|.. ++...+|||+|..+.+ +++.++.|+ ..+...|..+
T Consensus 30 ~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l 106 (185)
T PF01928_consen 30 PKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEAL 106 (185)
T ss_dssp EEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHT
T ss_pred CeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHh
Confidence 334456699999999999999999999964 6566699999999887 556666664 2456788999
Q ss_pred CCeEEEEEEeeeeeeeeCCEEEEeeccccc-CcceEEEEec--cHHHHHHHHHH-------cCCCC-CcccchhHHHH
Q 006094 343 GYTIATILKRSSHIFYDDRVCVKTDWLEQL-NRKYVQVQGR--DRLYVKYVGEQ-------LGLDG-SYVPRTYIEQI 409 (661)
Q Consensus 343 Gf~~~a~V~R~re~y~~g~~~i~lD~ve~L-g~~FveI~g~--~~~~V~~~~~~-------Lgl~g-~~i~kSYLEli 409 (661)
||.+.+.+.+.|..|..+++.|++|+++++ | .|+||+.. +.+.+.+++.+ ||+.. +.++++|++|+
T Consensus 107 ~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~-~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 107 GLRPVARIEKKRRSYRLEGVEVELDEVDGLPG-TFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TCEEEEEEEEEEEEEEETTEEEEEEEETTTTE-EEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred cCceeEEEEEEEEEEEECCEEEEEEEEecceE-EEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 999999999999999999999999999999 7 99999444 55555555555 99976 66899999886
No 90
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.34 E-value=1.4e-12 Score=131.49 Aligned_cols=147 Identities=13% Similarity=0.135 Sum_probs=104.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..|+++.++...|........+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH
Confidence 3578888887766321111358999999999999 99999999999999999999998 78999999986321
Q ss_pred ------ccccccccCCCCCCchhhHHHHHHhhh--ccc-------c-------ccc-cccccccccccccceeeccCccE
Q 006094 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 ------~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~V 161 (661)
...+++.+|++..++..++.+++.... .+. . ... ...+...+..++++..++.-+..
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 134788999988888778888875311 110 0 000 01122233344556666677777
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 161 l~~~p~llllDEPt~~LD~ 179 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDR 179 (228)
T ss_pred HhcCCCEEEEeCCCCCCCH
Confidence 7788888888888888886
No 91
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.34 E-value=8.6e-13 Score=131.55 Aligned_cols=142 Identities=23% Similarity=0.251 Sum_probs=101.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...|. +...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++....
T Consensus 1 ~l~~~~l~~~~~---~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 1 MIEFHNVSKAYP---GGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred CEEEEeeeEEeC---CCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 456777777662 22468999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--c---c-----------ccccc-ccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~-----------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++.+|++..|+..++.+++..... + . ....+ ..+......++++..++.-+..++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 2347889999988887888888754210 0 0 00001 1122223344555666666677777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 155 ~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 155 SPPLLLADEPTGNLDP 170 (214)
T ss_pred CCCEEEEeCCcccCCH
Confidence 7777777888888886
No 92
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1e-12 Score=131.81 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=102.2
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--cccccccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGN 111 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i~~~ 111 (661)
++.++...|....+...+++++||.+++|+ ++||+|+||||||||++.|++++ |..|.|.++|... ..+.++++
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v 78 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYV 78 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEE
Confidence 355565555321112579999999999999 99999999999999999999998 7899999998643 23457899
Q ss_pred cCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 112 FDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 112 fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
+|++..++..++.+++..... +. .... ...+...+..++++..++.-++.++.++.+++.||+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 999988887888888753211 10 0001 111222334455566667777778888888888898
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 159 t~~LD~ 164 (220)
T cd03293 159 FSALDA 164 (220)
T ss_pred CCCCCH
Confidence 888886
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.34 E-value=1.2e-12 Score=131.27 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=103.4
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------- 104 (661)
+++.++...|....+...+++++||.+++|+ +++|+||||||||||+++|++.+ |..|.|.++|....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHH
Confidence 4566666665322223569999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--c---cc-----------ccc-cccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++..++..++.+++..... . .. ... +..+...+..++++..++.-+..++.
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 1347899999988887888888753210 0 00 000 11222334445556667777778888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 159 ~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 159 QPSLVLADEPTGNLDN 174 (221)
T ss_pred CCCEEEEeCCCCcCCH
Confidence 8888888999888886
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=7.8e-13 Score=138.86 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=104.0
Q ss_pred eeeeecccceeeecc-CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 33 RYEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
|+++.+++..|.... ....+++++||.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 567788877774211 11358999999999999 99999999999999999999998 89999999997421
Q ss_pred -----ccccccccCCC--CCCchhhHHHHHHhhhc--c---c-----------cccc-c-ccccccccccccceeeccCc
Q 006094 105 -----SRIIDGNFDDP--RLTDYDTLLENIRGLKE--G---K-----------AVQV-P-IYDFKSSSRIGYRTLEVPSS 159 (661)
Q Consensus 105 -----~~~i~~~fq~p--~~~d~~tl~enL~~L~~--g---~-----------~I~~-P-~yd~~~~~r~~~~~~~v~~a 159 (661)
.+.++++||+| ..|+ .++.+++..... + . .+.. + ..+...+..++++..++.-+
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 23478999987 4554 478888753211 1 0 0111 1 12333444556666777778
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
.+++.++.+++.||+...+|.
T Consensus 157 ~aL~~~p~illLDEPt~gLD~ 177 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDP 177 (288)
T ss_pred HHHHhCCCEEEEECCccCCCH
Confidence 888888888888999888886
No 95
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.2e-12 Score=130.34 Aligned_cols=139 Identities=16% Similarity=0.190 Sum_probs=99.4
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---cccccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDG 110 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---~~~i~~ 110 (661)
++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 2 ~~~~l~~~~----~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~ 74 (210)
T cd03269 2 EVENVTKRF----GRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74 (210)
T ss_pred EEEEEEEEE----CCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEE
Confidence 344555544 34568999999999999 99999999999999999999998 78999999987432 345788
Q ss_pred ccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhcc
Q 006094 111 NFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de 173 (661)
.+|++..++..++.+++..... +. . ... +..+...+..++++..++.-+..++.++.+++.||
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999988888888888754221 10 0 000 01122223344455566666677777777777888
Q ss_pred ccCCCCE
Q 006094 174 LRPLIDL 180 (661)
Q Consensus 174 Lr~llDl 180 (661)
+...+|.
T Consensus 155 P~~~LD~ 161 (210)
T cd03269 155 PFSGLDP 161 (210)
T ss_pred CCcCCCH
Confidence 8888885
No 96
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.33 E-value=8e-13 Score=132.16 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=102.0
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
|+++.+++..|........++++++|.+++|+ +++|+|+||||||||++.|++++ |..|.|.++|.... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHH
Confidence 35666766666321111269999999999999 99999999999999999999998 78999999986421 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc---c-----------cccc-ccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.+++++|++..|+..++.+++..... +. . ...+ ..+...+..++++..++.-++.++.++.+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 357889999988888888888853211 10 0 0001 11222233445556666667777777777
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 158 lllDEPt~~LD~ 169 (218)
T cd03266 158 LLLDEPTTGLDV 169 (218)
T ss_pred EEEcCCCcCCCH
Confidence 778888888885
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=7.4e-13 Score=145.47 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=99.0
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP 115 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq~p 115 (661)
+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++|+||++
T Consensus 39 ~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 39 GLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred CCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 44568999999999999 99999999999999999999998 88999999986321 13578999999
Q ss_pred CCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 116 RLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 116 ~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
.+|+..++.+|+..... +. .+.. ...+...+..++++..++.-++.++.++.+++.||+...+
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 99998899999864211 10 0011 1123334455666777777777888888888888988888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 196 D~ 197 (400)
T PRK10070 196 DP 197 (400)
T ss_pred CH
Confidence 86
No 98
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.33 E-value=1.2e-12 Score=134.52 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=103.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
.+++++.++...|. ...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++....
T Consensus 3 ~~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 3 ENKLNVIDLHKRYG----EHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred CccEEEeeeEEEEC----CEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccc
Confidence 45678888877763 3579999999999999 99999999999999999999998 78999999986321
Q ss_pred ---------------ccccccccCCCCCCchhhHHHHHHhhh---cc-c-------------ccccccc--ccccccccc
Q 006094 105 ---------------SRIIDGNFDDPRLTDYDTLLENIRGLK---EG-K-------------AVQVPIY--DFKSSSRIG 150 (661)
Q Consensus 105 ---------------~~~i~~~fq~p~~~d~~tl~enL~~L~---~g-~-------------~I~~P~y--d~~~~~r~~ 150 (661)
.+.+++++|++..++..++.+++.... .+ . ....... +...+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 234788999998888888888875310 00 0 0111111 222233444
Q ss_pred cceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++..++.-++.++-++.+++.||+...+|.
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~ 185 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDP 185 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 555666666777777777777888888886
No 99
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=2.9e-12 Score=128.54 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=102.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc----cc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SR 106 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----~~ 106 (661)
.++++.+++..| +...+++++||.+.+|+ +++|+|+||||||||++.|++.+ |+.|.|.+++.... .+
T Consensus 10 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSR----NEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEec----CCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhh
Confidence 478888887766 23468999999999999 99999999999999999999998 78999999986432 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--ccc-----------cccc-ccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GKA-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
.+++.+|.+..++..++.+++..... +.. +..+ ..+......++++..++.-++.++.+..+++.|
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 46788888888777788887753211 100 1111 122223334455566666677777777777778
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 163 EPt~~LD~ 170 (214)
T PRK13543 163 EPYANLDL 170 (214)
T ss_pred CCcccCCH
Confidence 88887776
No 100
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.1e-12 Score=138.62 Aligned_cols=203 Identities=15% Similarity=0.244 Sum_probs=141.5
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCccc----
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYND---- 103 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~---- 103 (661)
++++++.-.|....|...++++|||.+.+|+ ++||+|.|||||||+++.|.+++| ..|.|.++|...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 5788898899887788899999999999999 999999999999999999999995 247888888621
Q ss_pred -------cccccccccCCCC--CCchhhHHHHHHhhhc--------------------ccccccc--ccccccccccccc
Q 006094 104 -------SSRIIDGNFDDPR--LTDYDTLLENIRGLKE--------------------GKAVQVP--IYDFKSSSRIGYR 152 (661)
Q Consensus 104 -------~~~~i~~~fq~p~--~~d~~tl~enL~~L~~--------------------g~~I~~P--~yd~~~~~r~~~~ 152 (661)
..+.++++||+|. +.+..++.+.+..... .-.+..| .++...|+.+++.
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM 158 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH
Confidence 1235789999973 3455555544432111 1112233 5677788888877
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCC
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQT 232 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ 232 (661)
.+++-.+-.+..++.+++.||+...+|.+ ....+...+ +.+.+ ....
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt----------~QaqIl~Ll-----------~~l~~------------e~~~ 205 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVT----------VQAQILDLL-----------KELQR------------EKGT 205 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHH----------HHHHHHHHH-----------HHHHH------------hcCC
Confidence 77776666777788888888888777763 111221111 11100 1234
Q ss_pred ceEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHccc
Q 006094 233 AHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (661)
Q Consensus 233 ADIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l 272 (661)
|=+.|.+|.......++.++|.+++.-+..+...++|..+
T Consensus 206 aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P 245 (316)
T COG0444 206 ALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245 (316)
T ss_pred EEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCC
Confidence 5677777777777788888888888777777777777654
No 101
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.33 E-value=1.3e-11 Score=121.81 Aligned_cols=119 Identities=14% Similarity=0.028 Sum_probs=103.9
Q ss_pred cceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEee---------------hhhHHHHhhc
Q 006094 278 EETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS---------------VRLLGGLMAL 342 (661)
Q Consensus 278 ~~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~---------------v~~~~gL~~L 342 (661)
..+.|+||..|+.++...+.+||+|..|+++.+|||+|.. ..|++.+.+|+ ..+.+.|.++
T Consensus 27 ~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L~~l 102 (180)
T cd07762 27 FKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE----VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKLKEL 102 (180)
T ss_pred EEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CCCcEEeecCCHHHHHHHhccccCCchHHHHHHHHh
Confidence 4456999999999999999999999999999999999985 56888888887 2577888999
Q ss_pred CCeE-----EEEEEeeeeeeeeCCEEEEeecccccCcceEEEEe------ccHHHHHHHHHHcCCCCCc
Q 006094 343 GYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG------RDRLYVKYVGEQLGLDGSY 400 (661)
Q Consensus 343 Gf~~-----~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g------~~~~~V~~~~~~Lgl~g~~ 400 (661)
||.. ++.+.+.|..|..++.++|||++++||..++||+- ..++.+.+++++|||.-.+
T Consensus 103 g~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 103 GIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred CCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 9985 99999999999999999999999999955588853 3678899999999998644
No 102
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=9.2e-13 Score=138.09 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=101.6
Q ss_pred eeeecccceeeecc-CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 34 YEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
+++.+++..|.... ....+|+++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccch
Confidence 67777777763211 12468999999999999 99999999999999999999998 88999999997431
Q ss_pred ----ccccccccCCCC--CCchhhHHHHHHhhhc--cc--------------cccc--cccccccccccccceeeccCcc
Q 006094 105 ----SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ----~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g~--------------~I~~--P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
++.++++||+|. +|+ .++.+++..... +- .+.. +..+......++++..++..++
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 234789999873 444 478888753211 10 0111 1122233444555666677777
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 159 aL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred HHHhCCCEEEEECCcccCCH
Confidence 88888888888898888886
No 103
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.32 E-value=1.2e-12 Score=132.40 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=98.4
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------cc
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SR 106 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~~ 106 (661)
+.++...| +...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... ..
T Consensus 3 ~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 3 VRGLTKRF----GGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeEEEE----CCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 44554444 34579999999999999 99999999999999999999998 78999999986321 12
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc-----------------cc-------cc-cccccccccccccceeeccCc
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK-----------------AV-------QV-PIYDFKSSSRIGYRTLEVPSS 159 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~-----------------~I-------~~-P~yd~~~~~r~~~~~~~v~~a 159 (661)
.+++++|++..++..++.+++..... +. .+ .. ...+...+..++++..++.-+
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH
Confidence 46789999998888888888753211 00 00 00 011222233445556666667
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
..++.++.+++.||+...+|.
T Consensus 156 ~al~~~p~llllDEPt~~LD~ 176 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNP 176 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCH
Confidence 777778888888888888886
No 104
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=8.7e-13 Score=139.93 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=103.1
Q ss_pred eeeeecccceeeecc-CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 33 RYEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
++++.++...|.-.. ....+++++||.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 367777777773211 12368999999999999 99999999999999999999998 7899999986421
Q ss_pred ------------------------cccccccccCCCC-CCchhhHHHHHHhhhc--cc--------------cccc--cc
Q 006094 104 ------------------------SSRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PI 140 (661)
Q Consensus 104 ------------------------~~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~--------------~I~~--P~ 140 (661)
..+.++++||+|. .+...++.+++..... +. .+.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 1234689999873 3334688888753211 10 0111 12
Q ss_pred cccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 141 yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+......++++..++.-+..++.++.+++.||+...+|.
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~ 198 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP 198 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 3334445566677777888888888888888999988886
No 105
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.32 E-value=3.3e-12 Score=132.35 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=103.9
Q ss_pred ceeeeecccceeeeccC-----ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc
Q 006094 32 DRYEIVPIEDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS 105 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g-----~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~ 105 (661)
.++++.++.+.|....+ ...|+++|||.+.+|+ ++||+|.|||||||+.+.|.+++ |+.|.|.++|.....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 47888999999876544 4689999999999999 99999999999999999999999 899999999875321
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (661)
.. .....+.+..+...-....-.+....|+.++++.+++..++.+++++-++..||+...+|..
T Consensus 80 ~~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 80 LS------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred cc------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 11 11222223332222112223466777888888888999999999999999999999988873
No 106
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.32 E-value=1.6e-12 Score=131.11 Aligned_cols=139 Identities=22% Similarity=0.230 Sum_probs=100.8
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------c
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------S 105 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~ 105 (661)
++.++.+.| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 2 RAENLSKRY----GKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred eEEEEEEEe----CCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 344555554 34579999999999999 99999999999999999999998 78999999986321 1
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
..+++.+|++..++..++.+++..... +. . +.. ...+...+..++++..++.-+..++.++.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 247889999988888888888864211 10 0 000 111222333445566667777788888888
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 155 lllDEPt~~LD~ 166 (232)
T cd03218 155 LLLDEPFAGVDP 166 (232)
T ss_pred EEecCCcccCCH
Confidence 888999888886
No 107
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.32 E-value=8.1e-13 Score=129.64 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=124.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
.+++.++.+.| |...+|++||+...+|+ +|.|+|.||||||||++||.-+. |..|.|...|....
T Consensus 6 ~l~v~dlHK~~----G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 6 ALEVEDLHKRY----GEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred ceehhHHHhhc----ccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 46677777777 77889999999999999 99999999999999999998776 99999999886210
Q ss_pred -------------ccccccccCCCCCCchhhHHHHHHhh-----h--ccccccc-----------cccccccccccccce
Q 006094 105 -------------SRIIDGNFDDPRLTDYDTLLENIRGL-----K--EGKAVQV-----------PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 -------------~~~i~~~fq~p~~~d~~tl~enL~~L-----~--~g~~I~~-----------P~yd~~~~~r~~~~~ 153 (661)
+...+++||+++++.++++.+|+-.. . +...++. ...+..+...+++++
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 11357899999999999999987421 0 0111110 011222334556777
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
.+++.++.+.+|+..++.|++...+|. +=+--.-++.|++.+.|++..-|.+.+
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDP-------ElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDP-------ELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCH-------HHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 888888889999988888888888884 333445578889999999865555544
No 108
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.32 E-value=2.8e-12 Score=125.54 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=95.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++.+.| ++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.+.+++....
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHH
Confidence 467777776654 7999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCC---CCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCC
Q 006094 105 --SRIIDGNFDDP---RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (661)
Q Consensus 105 --~~~i~~~fq~p---~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (661)
.+.++++||++ ..++..++.+++..... .++++..++.-+..++.++.+++.||+...+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD 136 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVD 136 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCC
Confidence 23477889885 46777788888864321 33344455666677777777777788888888
Q ss_pred E
Q 006094 180 L 180 (661)
Q Consensus 180 l 180 (661)
.
T Consensus 137 ~ 137 (182)
T cd03215 137 V 137 (182)
T ss_pred H
Confidence 6
No 109
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.4e-12 Score=136.80 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=102.8
Q ss_pred eeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 34 YEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
+++.++.+.|....+ ...++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHH
Confidence 677777777632111 2469999999999999 99999999999999999999998 89999999997431
Q ss_pred --ccccccccCCCC-CCchhhHHHHHHhhhc--c--------------ccccc---cccccccccccccceeeccCccEE
Q 006094 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQV---PIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 --~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g--------------~~I~~---P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
...++++||+|. .+...++.+++..... + ..+.. ...+...+..++++..++.-++.+
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 234789999874 2334578887753110 1 00111 112333445556666777777888
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 160 ~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 160 AMEPKILILDEPTAGLDP 177 (287)
T ss_pred HcCCCEEEEECCccCCCH
Confidence 888888888888888886
No 110
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.8e-12 Score=125.90 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=89.8
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------cccc
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRII 108 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~i 108 (661)
+.++...| +...++++++|.+.+|+ +++|+|+||||||||++.|++.+ |..|.|.+++.... ...+
T Consensus 3 ~~~l~~~~----~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (173)
T cd03230 3 VRNLSKRY----GKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75 (173)
T ss_pred EEEEEEEE----CCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccE
Confidence 44555444 23468999999999999 99999999999999999999998 78999999986421 2357
Q ss_pred ccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+++||++..++..++.+++. .++++..++.-++.++.++.+++.||+...+|.
T Consensus 76 ~~~~q~~~~~~~~tv~~~~~-------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 76 GYLPEEPSLYENLTVRENLK-------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred EEEecCCccccCCcHHHHhh-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 88999998888888888875 223334444455555666666666777777775
No 111
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.9e-12 Score=128.96 Aligned_cols=138 Identities=12% Similarity=-0.029 Sum_probs=104.3
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCcccc-----
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS----- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~~~~----- 104 (661)
+.+.++++.|..+.+...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 4677888888665567789999999999999 99999999999999999999997 36899999986421
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+.+++.+|++..++..++.+++....... .+......++++..++.-+..++.++.+++.||+...+|.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 234788999988888889999986432111 1222233444555566666777777777777888888875
No 112
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.31 E-value=7.4e-13 Score=143.79 Aligned_cols=130 Identities=21% Similarity=0.137 Sum_probs=100.8
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP 115 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq~p 115 (661)
+...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++
T Consensus 4 ~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45678999999999999 99999999999999999999998 89999999996421 34689999999
Q ss_pred CCCchhhHHHHHHhhhc--cc--------------ccccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 116 RLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 116 ~~~d~~tl~enL~~L~~--g~--------------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
.+|++.++.+|+..... +. .+... ..+...+..++++..++.-++.++-+..+++.||+...+
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999999999864211 10 01111 123344455666777777777888888888888888888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 161 D~ 162 (363)
T TIGR01186 161 DP 162 (363)
T ss_pred CH
Confidence 86
No 113
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=2.5e-12 Score=127.05 Aligned_cols=133 Identities=12% Similarity=-0.012 Sum_probs=99.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCCccc---ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYND---SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~~~~---~~~ 106 (661)
++++.++...|....+...+++++||.+++|+ +++|+|+||||||||++.|++.. |..|.|.+++... ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhh
Confidence 46677777766321112568999999999999 99999999999999999999974 5899999998643 223
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+++.+|++..++..++.+++....... ..++++..++.-++.++.++.+++.||+...+|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLR------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHh------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 5788999988888889999986421100 3444455556666667777777777888887875
No 114
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.6e-12 Score=131.34 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=101.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~-- 104 (661)
++++.+++..| +...+++++||.+.+|+ +++|+|+||||||||+++|++.+ | ..|.|.++|....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSF----GQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred eEEEEeeEEEE----CCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 56777777665 23568999999999999 99999999999999999999997 3 5899999986421
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhhc--c-----c----cc-------cc-----cccccccccccccceeec
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----K----AV-------QV-----PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~~--g-----~----~I-------~~-----P~yd~~~~~r~~~~~~~v 156 (661)
...++++||++..++..++.+++..... + . .+ .. ...+......++++..++
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 2357899999988888889988853211 0 0 00 00 011222333445555666
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-++.++..+.+++.||+...+|.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~ 179 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDP 179 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCH
Confidence 667777777777777888888885
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.4e-12 Score=137.17 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=103.0
Q ss_pred eeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 34 YEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
+++.++...|....+ ...+|+++||.+++|+ +++|+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccch
Confidence 677787777742211 2468999999999999 99999999999999999999998 88999999997431
Q ss_pred ----ccccccccCCCC--CCchhhHHHHHHhhhc--cc--------------ccccc--ccccccccccccceeeccCcc
Q 006094 105 ----SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ----~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g~--------------~I~~P--~yd~~~~~r~~~~~~~v~~a~ 160 (661)
.+.++++||+|. ++ ..++.+++..... +- .+..+ ..+......++++..++.-++
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 134789999873 44 4588888753211 10 11111 123334445556667777778
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 159 aL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred HHHcCCCEEEEECCcccCCH
Confidence 88888888888888888886
No 116
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.1e-12 Score=133.02 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=100.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++...| +...+++++||.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 4 VMLSFDKVSAHY----GKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76 (237)
T ss_pred cEEEEEeEEEee----CCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHH
Confidence 367777777766 33569999999999999 99999999999999999999998 78999999996421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc-c--cc----cc-----cc----ccccccccccccceeeccCccEEEEEe
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE-G--KA----VQ-----VP----IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~-g--~~----I~-----~P----~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++++|++..|+..++.+++..... . .. +. .+ ..+...+..++++..++.-+..++.++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 2347789999988887788888753211 0 00 00 00 011122233445555566666777777
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 157 ~illlDEPt~~LD~ 170 (237)
T PRK11614 157 RLLLLDEPSLGLAP 170 (237)
T ss_pred CEEEEcCccccCCH
Confidence 77777888887775
No 117
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.7e-12 Score=129.53 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=99.8
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i 108 (661)
++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 2 ~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i 74 (213)
T cd03259 2 ELKGLSKTY----GSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI 74 (213)
T ss_pred eeeeeEEEe----CCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE
Confidence 344555544 33579999999999999 99999999999999999999998 78999999986421 2357
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc--c---c-----------cccc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~--g---~-----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++++|++..++..++.+++..... + . .... ...+......++++..++.-++.++.++.+++.
T Consensus 75 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lll 154 (213)
T cd03259 75 GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154 (213)
T ss_pred EEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999888887888888753211 0 0 0001 111222334455566667777778888888888
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 155 DEPt~~LD~ 163 (213)
T cd03259 155 DEPLSALDA 163 (213)
T ss_pred cCCcccCCH
Confidence 898888886
No 118
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.31 E-value=2.2e-12 Score=128.24 Aligned_cols=139 Identities=21% Similarity=0.191 Sum_probs=101.1
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i 108 (661)
++.++.+.| +...++++++|.+++|+ +++|+|+||||||||++.|++++ |..|.|.++|.... .+.+
T Consensus 2 ~~~~l~~~~----~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 2 KTNDLTKTY----GKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred EEEEEEEEE----CCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 345555555 34579999999999999 99999999999999999999998 78999999987432 2357
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc--cc---cc-------ccc-ccccccccccccceeeccCccEEEEEehhhhhcccc
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE--GK---AV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~--g~---~I-------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
++++|++..++..++.+++..... +. .+ ... ..+...+..++++..++.-+..++.++.+++.||+.
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 889999988888899988854221 10 00 000 112223334455666667777788888888888888
Q ss_pred CCCCE
Q 006094 176 PLIDL 180 (661)
Q Consensus 176 ~llDl 180 (661)
..+|.
T Consensus 155 ~~LD~ 159 (208)
T cd03268 155 NGLDP 159 (208)
T ss_pred ccCCH
Confidence 88886
No 119
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.5e-12 Score=137.80 Aligned_cols=145 Identities=10% Similarity=0.151 Sum_probs=106.6
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-----CceEEecCCcccc---
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDS--- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-----~~g~I~lD~~~~~--- 104 (661)
++++.++++.|....+...++++|||.+.+|+ ++||+|+||||||||+++|+++++ +.|.|.++|....
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 67888888888544456789999999999999 999999999999999999999973 6799999986421
Q ss_pred --------ccccccccCCCC--CCchhhHHHHHHhhhc-----c-----------------cccccc----ccccccccc
Q 006094 105 --------SRIIDGNFDDPR--LTDYDTLLENIRGLKE-----G-----------------KAVQVP----IYDFKSSSR 148 (661)
Q Consensus 105 --------~~~i~~~fq~p~--~~d~~tl~enL~~L~~-----g-----------------~~I~~P----~yd~~~~~r 148 (661)
.+.++++||++. +++..++.+++..... + +.+..+ ..+...+..
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 124789999986 3555666666642100 0 001111 123344556
Q ss_pred cccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 149 ~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++++..++..+..++.++.+++.||+...+|.
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~ 191 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEP 191 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCH
Confidence 66777777788888888888888999988886
No 120
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=6.7e-13 Score=131.66 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=101.3
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--cccccccccCCCCCCchhhHHH
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPRLTDYDTLLE 125 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i~~~fq~p~~~d~~tl~e 125 (661)
...+++++|+.+..|+ .+.+.|||||||||+++.++++. |..|.|.+++... +....+.+||++.+++|.++.+
T Consensus 17 ~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 17 PRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVID 93 (259)
T ss_pred chhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHH
Confidence 3569999999999999 99999999999999999999998 8999999999743 3345688999999999999999
Q ss_pred HHHhhhcccccc----------------cccc-ccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 126 NIRGLKEGKAVQ----------------VPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 126 nL~~L~~g~~I~----------------~P~y-d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
|++.-.+-..+. ..-+ +..+-+.+++..+++..++.+.+|+.+++.||+...+|.
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 997533221111 1111 122233455666778888999999999999998887775
No 121
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.2e-12 Score=139.44 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=101.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
|+++ ++.+.| +.+. + ++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|...
T Consensus 1 ~l~~-~l~k~~----~~~~-~-~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQL----GDLC-L-TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEe----CCEE-E-EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccc
Confidence 3444 555555 3333 3 8999999999 99999999999999999999998 8899999988532
Q ss_pred ---cccccccccCCCCCCchhhHHHHHHhhhccc----------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 104 ---SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
..+.++++||++.+|+..++.+++....... .+.. +..+...+..++++..++.-++.++.++.++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 1245789999999999999999886321100 0111 2234444556666777777788888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 151 LLDEPts~LD~ 161 (352)
T PRK11144 151 LMDEPLASLDL 161 (352)
T ss_pred EEcCCcccCCH
Confidence 88998888886
No 122
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.30 E-value=1.5e-12 Score=128.90 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=93.1
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----------cccccccccCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDP 115 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----------~~~~i~~~fq~p 115 (661)
+...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++... ..+.+++++|++
T Consensus 9 ~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred CCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 34579999999999999 99999999999999999999998 7899999998741 123578899999
Q ss_pred CCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 116 RLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 116 ~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
..++..++.+++..... +. .... ...+...+..++++..++.-++.++-++.+++.||+...+
T Consensus 86 ~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~L 165 (206)
T TIGR03608 86 ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSL 165 (206)
T ss_pred hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 88887888888754211 00 0000 0112222334445555566666677777777778888777
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 166 D~ 167 (206)
T TIGR03608 166 DP 167 (206)
T ss_pred CH
Confidence 75
No 123
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=3.1e-12 Score=126.86 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=100.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
|+++.+++..| +...++++++|.+++|+ ++||+|+||||||||+++|+++. |..|.|.++|.... .
T Consensus 1 ml~~~~l~~~~----~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDY----HDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEe----CCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHH
Confidence 45667776665 23569999999999999 99999999999999999999998 88999999987432 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc---------ccccc-ccccccccccccceeeccCccEEEEEehhhhhcc
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK---------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de 173 (661)
+.+++.+|.+..++..++.+++..... .. ....+ ..+...+..++++..++.-++.++.++.+++.||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 346788888877777788888753210 00 00111 1122233444555566666777777777777788
Q ss_pred ccCCCCE
Q 006094 174 LRPLIDL 180 (661)
Q Consensus 174 Lr~llDl 180 (661)
+...+|.
T Consensus 154 P~~~LD~ 160 (200)
T PRK13540 154 PLVALDE 160 (200)
T ss_pred CCcccCH
Confidence 8888875
No 124
>PRK10908 cell division protein FtsE; Provisional
Probab=99.30 E-value=2.2e-12 Score=129.64 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=101.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++.+.|. +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 1 ~l~~~~l~~~~~---~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 1 MIRFEHVSKAYL---GGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV 74 (222)
T ss_pred CEEEEeeEEEec---CCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHH
Confidence 456777776662 22468999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhh--ccc---c----c-------cc-cccccccccccccceeeccCccEEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK---A----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~---~----I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++..++..++.+++.... .+. . + .. +..+...+..++++..++.-++.++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc
Confidence 234688999988877788888875421 110 0 0 00 11122233444555666666777777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 155 ~p~llllDEPt~~LD~ 170 (222)
T PRK10908 155 KPAVLLADEPTGNLDD 170 (222)
T ss_pred CCCEEEEeCCCCcCCH
Confidence 7777778888888886
No 125
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2e-12 Score=138.35 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=105.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-----CceEEecCCcccc---
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDS--- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-----~~g~I~lD~~~~~--- 104 (661)
++++.++...|....+...+|++|||.+.+|+ ++||+|+||||||||++.|+++++ ..|.|.++|....
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 57888888888543334679999999999999 999999999999999999999983 6799999997421
Q ss_pred --------ccccccccCCCC--CCchhhHHHHHHhh-h--cc--------------cccccc----ccccccccccccce
Q 006094 105 --------SRIIDGNFDDPR--LTDYDTLLENIRGL-K--EG--------------KAVQVP----IYDFKSSSRIGYRT 153 (661)
Q Consensus 105 --------~~~i~~~fq~p~--~~d~~tl~enL~~L-~--~g--------------~~I~~P----~yd~~~~~r~~~~~ 153 (661)
.+.++++||++. +++..++.+++... . .+ +.+..+ ..+...++.++++.
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 124789999984 45545554443221 0 00 011111 23445566677777
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+++..+..++.++.+++.||+...+|.
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~ 186 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDV 186 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 778788888888888888999988886
No 126
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.30 E-value=2.1e-12 Score=129.32 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=99.0
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------c
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------S 105 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~ 105 (661)
++.++...| +...++++++|.+.+|+ ++||+||||||||||+++|++++ |..|.|.+++.... .
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 2 EVENLNAGY----GKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred EEeeEEeec----CCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 344555544 34578999999999999 99999999999999999999998 78999999986321 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc-c-----------c-ccc-ccccccccccccceeeccCccEEEEEehhh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK-A-----------V-QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-~-----------I-~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
+.++++||++..++..++.+++..... +. . + ..+ ..+...+..++++..++.-++.++.+..++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 347889999988888888888853211 00 0 0 000 112222334445556666677777777788
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 155 llDEPt~~LD~ 165 (222)
T cd03224 155 LLDEPSEGLAP 165 (222)
T ss_pred EECCCcccCCH
Confidence 88888888876
No 127
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.30 E-value=5.2e-12 Score=138.67 Aligned_cols=257 Identities=15% Similarity=0.174 Sum_probs=145.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc-----cc---cc----ccc-ccCCCCCCchhhHHHHHH----h
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---RI----IDG-NFDDPRLTDYDTLLENIR----G 129 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-----~~---~~----i~~-~fq~p~~~d~~tl~enL~----~ 129 (661)
.+|||+|+.||||||+++.|+.+ +..+|+.|.... .. .. .+- .++....+|...+.+.+- .
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~--G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAEL--GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 57999999999999999999984 677888887511 11 01 111 222334566665555442 2
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
++.-+.+.+|..-........ ......++++|.+++++..+...||.+|||++|.++++.| ...++|.+.++
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~R----l~~rRg~s~~~ 151 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRR----LVEQRGMAEAD 151 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHH----HHhcCCCCHHH
Confidence 333345666654322221111 1133457777888888888899999999999999886544 33457999999
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHcccccccccceeeeecCCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPG 289 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l~~~~~~~~~DIYl~pP~ 289 (661)
+..++..+.. .++.+..||++|.|++++..- ... -..+....+..++..+....+..+..|-+.|..
T Consensus 152 a~~ri~~Q~~------~e~k~~~AD~vIdN~~s~e~l-~~~------v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~yd 218 (395)
T PRK03333 152 ARARIAAQAS------DEQRRAVADVWLDNSGTPDEL-VEA------VRALWADRLLPFAHNLRARRRAARAPPRLVPAD 218 (395)
T ss_pred HHHHHHhcCC------hHHHHHhCCEEEECCCCHHHH-HHH------HHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCC
Confidence 8888855422 233468899999998864310 000 001111122222233322223333345444444
Q ss_pred CC----cccccceEEEeecCCeEEEEEe--eeecCCCceeeeeeEEEeehhh-------HHHHhhcCCeEEE
Q 006094 290 ED----PDACQSYLRMRNRDGKYNLMFE--EWVTDSPFIISPRITFEVSVRL-------LGGLMALGYTIAT 348 (661)
Q Consensus 290 ~d----f~~tde~LRvR~~dg~~~Ltyk--gp~~d~~fi~rp~~ef~V~v~~-------~~gL~~LGf~~~a 348 (661)
+. |+....-| +..=|...+.++ |.-.=.....+|-+++-|.+.. ...|+++||....
T Consensus 219 p~W~~~f~~e~~~l--~~~l~~~~~~IeHIGSTsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~~ 288 (395)
T PRK03333 219 PSWPAQAQRIVARL--KTAAGHKALRVDHIGSTAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRLP 288 (395)
T ss_pred CCcHHHHHHHHHHH--HHhcCccceEEEEeccCCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCcccc
Confidence 43 22211111 221122333443 2222222367999999998643 3477999998653
No 128
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.30 E-value=2.3e-12 Score=145.29 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=110.6
Q ss_pred ccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-
Q 006094 27 KKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS- 104 (661)
Q Consensus 27 ~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~- 104 (661)
+.++..++++.++.+.| +...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 5 ~~~~~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 5 DTTAPPLLCARSISKQY----SGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77 (510)
T ss_pred cCCCCceEEEEeEEEEe----CCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 34445578888887776 33568999999999999 99999999999999999999998 78999999986321
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhhccc------------ccccc-ccccccccccccceeeccCccEEEE
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~------------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
...+++++|++..++..++.+++....... .+... ..+...+..++++..++.-+..++.
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 124778999998888889988875321100 01111 1233344556667777778888888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 158 ~p~lllLDEPt~~LD~ 173 (510)
T PRK15439 158 DSRILILDEPTASLTP 173 (510)
T ss_pred CCCEEEEECCCCCCCH
Confidence 8888888999998886
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.5e-12 Score=130.61 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=103.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRF----GGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEE----CCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHH
Confidence 478888887776 34579999999999999 99999999999999999999998 78999999997421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhcc------------------c------cc-------cc-cccccccccccc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKEG------------------K------AV-------QV-PIYDFKSSSRIG 150 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~g------------------~------~I-------~~-P~yd~~~~~r~~ 150 (661)
...++++||++.+++..++.+++...... . .+ .. +..+...+..++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAY 156 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCH
Confidence 12356789999999888998887642100 0 00 00 011222223344
Q ss_pred cceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++..++.-+..++.++.+++.||+...+|.
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~ 186 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNP 186 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 555666667778888888888888888886
No 130
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.29 E-value=2.9e-12 Score=140.92 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=104.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.+++..| +...+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~L~~~nls~~y----~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 3 MIDVSDLSVEF----GDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred eEEEeeEEEEE----CCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 67777776665 45689999999999999 99999999999999999999998 88999999997422
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc------c---c-----------cccc-cccccccccccccceeeccCccEEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE------G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~------g---~-----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
.+.+++++|++.++...++.+++..... + . .+.. ...+......++++.+++..++.++
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 2457889999888777888888753210 0 0 0000 1122223344555666777777788
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
-++.+++.||+...+|.
T Consensus 156 ~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 156 QATPVLLLDEPTASLDI 172 (402)
T ss_pred cCCCEEEEECCcccCCH
Confidence 88888888898888886
No 131
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.4e-12 Score=129.89 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=101.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 2 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFY----GAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEE----CCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccch
Confidence 45666666655 33579999999999999 99999999999999999999998 78999999986420
Q ss_pred ------ccccccccCCCCCCchhhHHHHHHhh-h--ccc--------------cccc-cccccccccccccceeeccCcc
Q 006094 105 ------SRIIDGNFDDPRLTDYDTLLENIRGL-K--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ------~~~i~~~fq~p~~~d~~tl~enL~~L-~--~g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
...+++.+|++..|+..++.+++... . .+. .... +..+......++++..++.-++
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 23478899999988888888887521 0 010 0001 1122223334455566666677
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.+..+++.||+...+|.
T Consensus 155 al~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCH
Confidence 77777877778888888886
No 132
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.6e-12 Score=130.55 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=102.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~ 104 (661)
++++++.++...|. ...+++++||.+.+|+ +++|+|+||||||||+++|+++. |+.|.|.++|....
T Consensus 4 ~~~l~~~~l~~~~~----~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 4 PPKMEARGLSFFYG----DFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CcEEEEeeeEEEEC----CeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 45788888877762 3468999999999999 99999999999999999999985 36899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc--------cc-------cc-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------AV-------QV-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------~I-------~~-----P~yd~~~~~r~~~~~ 153 (661)
.+.+++++|++..|+ .++.+++..... +. .+ .. ...+......++++.
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234788999998887 488888853211 10 00 00 011222334455566
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 667777777888888888888888886
No 133
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.9e-12 Score=130.71 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=99.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 75 (241)
T PRK14250 3 EIEFKEVSYSS----FGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75 (241)
T ss_pred eEEEEeEEEEe----CCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHh
Confidence 45666766655 33568999999999999 99999999999999999999998 78999999986321
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhh--ccc----------ccccc--ccccccccccccceeeccCccEEEEEehhhh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~----------~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
...+++.+|++..|+ .++.+++.... .+. ....+ ..+......++++..++.-+..++.++.+++
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred hhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 234788999988886 57888775311 110 01111 1122233344556666666777777777777
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 155 lDEPt~~LD~ 164 (241)
T PRK14250 155 LDEPTSALDP 164 (241)
T ss_pred EeCCcccCCH
Confidence 7888888886
No 134
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.9e-12 Score=132.19 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=101.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--cccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIID 109 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i~ 109 (661)
|+++.+++..| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.++|... ....++
T Consensus 1 ml~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADY----GGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEe----CCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEE
Confidence 45666776665 33578999999999999 99999999999999999999998 7899999998643 223468
Q ss_pred cccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
+.+|++..++..++.+++..... +. . ... +..+......++++..++.-+..++.++.+++.|
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 89999988887888888753211 10 0 000 1112223344555666666677777777777788
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 154 EPt~~LD~ 161 (255)
T PRK11248 154 EPFGALDA 161 (255)
T ss_pred CCCccCCH
Confidence 88888886
No 135
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.29 E-value=4e-12 Score=129.04 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=100.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
++++.++...| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 1 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAY----GARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhh
Confidence 35666666665 33569999999999999 99999999999999999999998 78999999986321 1
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.+++.+|++..+...++.+++..... +. .... +..+...+..++++..++.-++.++.++.+
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 347889999888777788888753211 10 0000 112223334455566666667777777777
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 154 lllDEP~~~LD~ 165 (236)
T TIGR03864 154 LLLDEPTVGLDP 165 (236)
T ss_pred EEEcCCccCCCH
Confidence 777888888886
No 136
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.9e-12 Score=147.96 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=110.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
.|+++.+++..|....+...++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++...
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 488999998888433334679999999999999 99999999999999999999998 7889988776310
Q ss_pred --------------cccccccccCCC--CCCchhhHHHHHHhhhc---c--------------cccccc----ccccccc
Q 006094 104 --------------SSRIIDGNFDDP--RLTDYDTLLENIRGLKE---G--------------KAVQVP----IYDFKSS 146 (661)
Q Consensus 104 --------------~~~~i~~~fq~p--~~~d~~tl~enL~~L~~---g--------------~~I~~P----~yd~~~~ 146 (661)
....++++||+| .+++..++.+++..... + ..+..+ ..+...+
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 012478999998 56677788888753210 1 011121 1344455
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++++.+++.-+..++.+..+++.||+...+|.
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~ 201 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV 201 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCH
Confidence 6677777888888889999999999999999887
No 137
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=3.7e-12 Score=126.71 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=100.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
|+++.+++..| +...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .
T Consensus 1 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACER----DERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEE----CCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhh
Confidence 45667776665 34578999999999999 99999999999999999999998 78999999986421 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--c-c---cc-------cc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G-K---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g-~---~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
+.+++.++.+..++..++.+++..... + . .+ .. +..+......++++..++.-+..++-++.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 346778888877777788888754321 1 0 00 00 011222333444555666667777778888888
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 154 DEPt~~LD~ 162 (204)
T PRK13538 154 DEPFTAIDK 162 (204)
T ss_pred eCCCccCCH
Confidence 888888886
No 138
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=4.1e-12 Score=129.22 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=102.6
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (241)
T PRK10895 3 TLTAKNLAKAY----KGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75 (241)
T ss_pred eEEEeCcEEEe----CCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 56777777666 33579999999999999 99999999999999999999998 78999999986421
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc-cccc----------------ccc-ccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE-GKAV----------------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~-g~~I----------------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
...+++++|++..++..++.+++..... .... ... ..+...+..++++..++.-+..++.+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 2347889999988888888888754211 0000 000 01122233444556666667777778
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 156 p~llllDEPt~~LD~ 170 (241)
T PRK10895 156 PKFILLDEPFAGVDP 170 (241)
T ss_pred CCEEEEcCCcccCCH
Confidence 888888888888886
No 139
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.28 E-value=3.5e-12 Score=130.27 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=101.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...| +...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (250)
T PRK11264 3 AIEVKNLVKKF----HGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75 (250)
T ss_pred cEEEeceEEEE----CCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccc
Confidence 67777777666 23568999999999999 99999999999999999999998 78999999885321
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhh---ccc-------cc-------ccc-ccccccccccccceeeccC
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------AV-------QVP-IYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~-------~I-------~~P-~yd~~~~~r~~~~~~~v~~ 158 (661)
...+++++|++.+++..++.+++.... .+. .+ ... ..+...+..++++..++.-
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred hhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 134688999998888788888875311 110 00 001 1122233445556666666
Q ss_pred ccEEEEEehhhhhccccCCCCE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.++.+++.||+...+|.
T Consensus 156 a~al~~~p~lllLDEPt~~LD~ 177 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDP 177 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCH
Confidence 7777777777777888888886
No 140
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.28 E-value=3.4e-12 Score=128.10 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=99.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++++.+++..|........+++++||.+++|+ ++||+||||||||||+++|++.+ |..|.|.++|....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 35566666665211111368999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCC--CCCchhhHHHHHHhhh--cc-----c-----------cccc--cccccccccccccceeeccCc
Q 006094 105 ---SRIIDGNFDDP--RLTDYDTLLENIRGLK--EG-----K-----------AVQV--PIYDFKSSSRIGYRTLEVPSS 159 (661)
Q Consensus 105 ---~~~i~~~fq~p--~~~d~~tl~enL~~L~--~g-----~-----------~I~~--P~yd~~~~~r~~~~~~~v~~a 159 (661)
.+.+++.+|++ ..++..++.+++.... .+ . .... +..+...+..++++..++.-+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 13478889988 3455567777764211 00 0 0001 111222333455566667777
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
+.++.++.+++.||+...+|.
T Consensus 158 ral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 158 RALALNPKLLIADEPTSALDV 178 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCH
Confidence 778888888888998888886
No 141
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.28 E-value=4.1e-12 Score=128.35 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++...| +...+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++....
T Consensus 5 ~~~i~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 5 SPLLQLQNVGYLA----GDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred CceEEEeccEEee----CCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHH
Confidence 3578888888776 23568999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhh--ccc-----c-------cccc--ccccccccccccceeeccCccEEEEEe
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK-----A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~-----~-------I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
...++++||++.+++. ++.+++.... .+. . +... ..+......++++..++.-++.++.++
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 2357889999888874 8888875311 000 0 0010 112222333444555566666777777
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 157 ~llllDEPt~~LD~ 170 (225)
T PRK10247 157 KVLLLDEITSALDE 170 (225)
T ss_pred CEEEEeCCcccCCH
Confidence 77777888888875
No 142
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.9e-12 Score=133.89 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=106.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.+++..|... +...+|+++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKED-QEKYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH
Confidence 467888888877321 22458999999999999 99999999999999999999998 89999999997432
Q ss_pred -ccccccccCCCC-CCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.++++||+|. .+...++.+++..... +- .+.. ...+...+..++++..++.-++.++.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 234789999984 5666788888863211 00 0011 112333344555666777778888888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 159 p~lLlLDEPt~~LD~ 173 (279)
T PRK13650 159 PKIIILDEATSMLDP 173 (279)
T ss_pred CCEEEEECCcccCCH
Confidence 888888999888886
No 143
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.4e-12 Score=135.05 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=102.1
Q ss_pred eeeeecccceeeecc-CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 33 RYEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
++++.++++.|.... ....+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 456777777663111 12468999999999999 99999999999999999999998 89999999997421
Q ss_pred -----ccccccccCCCC-CCchhhHHHHHHhhhc--cc--------------cccc--cccccccccccccceeeccCcc
Q 006094 105 -----SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 -----~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~--------------~I~~--P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
...++++||++. .+...++.+++..... +. .+.. ...+...+..++++..++.-+.
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHH
Confidence 124788999873 2324678888753111 10 0111 1122333445556667777788
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 159 al~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred HHHcCCCEEEEECCCCCCCH
Confidence 88888888888999988886
No 144
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.28 E-value=2.7e-12 Score=124.60 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=87.6
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...|. .+...++++++|.+.+|+ +++|+|+||||||||++.|++.+ |..|.|.+++.... ..
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 2 EVENVSFRYP--GAEPPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred EEEEEEEEcC--CCCCcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 3445555442 222458999999999999 99999999999999999999998 78999999986321 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+++.+|++..++ .++.+++ .++++..++.-++.++-++.+++.||+...+|.
T Consensus 77 ~i~~~~q~~~~~~-~tv~~~l--------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~ 129 (173)
T cd03246 77 HVGYLPQDDELFS-GSIAENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV 129 (173)
T ss_pred heEEECCCCcccc-CcHHHHC--------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH
Confidence 4788999988777 4888876 222334444455555566666666777777775
No 145
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.1e-12 Score=136.64 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=104.8
Q ss_pred Cceeeeecccceeeecc-CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc----
Q 006094 31 SDRYEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---- 104 (661)
..++++.++...|.... ....+|+++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 45788888888774211 12468999999999999 99999999999999999999998 78999999985321
Q ss_pred -------------------ccccccccCCCC--CCchhhHHHHHHhhhc--cc--------------ccccc--cccccc
Q 006094 105 -------------------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKS 145 (661)
Q Consensus 105 -------------------~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g~--------------~I~~P--~yd~~~ 145 (661)
.+.++++||+|. +|+ .++.+++..... +. .+..+ ..+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 134788999873 554 488887743110 10 01111 122333
Q ss_pred ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 146 ~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
...++++..++.-++.++.++.+++.||+...+|.
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~ 209 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 44556667777778888888888888999888886
No 146
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.5e-12 Score=129.27 Aligned_cols=139 Identities=20% Similarity=0.247 Sum_probs=99.2
Q ss_pred eeecccceeeeccCc-eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------
Q 006094 35 EIVPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------- 104 (661)
++.++...| +. ..+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 2 EVENLSKTY----PNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALR 74 (241)
T ss_pred EEeeEEEec----CCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHH
Confidence 344555544 22 568999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc----------c---c----c-------cccc-ccccccccccccceeecc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE----------G---K----A-------VQVP-IYDFKSSSRIGYRTLEVP 157 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~----------g---~----~-------I~~P-~yd~~~~~r~~~~~~~v~ 157 (661)
.+.+++++|++..|+..++.+++..... + . . .... ..+...+..++++..++.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 154 (241)
T cd03256 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVA 154 (241)
T ss_pred HHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHH
Confidence 1347889999888887888888753110 0 0 0 0001 112223334555666667
Q ss_pred CccEEEEEehhhhhccccCCCCE
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDl 180 (661)
-+..++.++.+++.||+...+|.
T Consensus 155 la~al~~~p~llllDEPt~~LD~ 177 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDP 177 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCH
Confidence 77778888888888888888886
No 147
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3e-12 Score=133.42 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=103.3
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
+.++++.+++..|. +...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 2 ~~~l~~~~l~~~~~---~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 2 DNIIEVEDLHFRYK---DGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEK 75 (274)
T ss_pred CceEEEEEEEEEeC---CCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHH
Confidence 34778888887763 12458999999999999 99999999999999999999998 78999999997431
Q ss_pred --ccccccccCCCC-CCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
...++++||+|. .+...++.+++..... +. . +.. +..+...+..++++..++.-++.++.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 234789999874 3444678888753211 00 0 000 12233344455566666777777778
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 156 ~p~llllDEPt~~LD~ 171 (274)
T PRK13647 156 DPDVIVLDEPMAYLDP 171 (274)
T ss_pred CCCEEEEECCCcCCCH
Confidence 8888888888888886
No 148
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.28 E-value=2.5e-12 Score=133.16 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=105.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--ccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRII 108 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i 108 (661)
.++++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+++... ..+.+
T Consensus 11 ~~l~i~~l~~~~----~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRY----GERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEE----CCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCce
Confidence 467888887776 23568999999999999 99999999999999999999998 7899999887532 23457
Q ss_pred ccccCCCCCCchhhHHHHHHhhhcc---cc-------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKEG---KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~g---~~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
++++|++..++..++.+++...... .. ... +..+......++++..++.-++.++.++.+++.||+...
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 8999999888878888887532111 00 111 112233344555666667777778888888888898888
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 164 LD~ 166 (257)
T PRK11247 164 LDA 166 (257)
T ss_pred CCH
Confidence 886
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.28 E-value=3.8e-12 Score=143.14 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=108.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+++++||.+.+|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 3 ~~i~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAF----PGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEe----CCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 478888887776 33578999999999999 99999999999999999999998 88999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc-----c----c----c-------cccc-ccccccccccccceeeccCccE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE-----G----K----A-------VQVP-IYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~-----g----~----~-------I~~P-~yd~~~~~r~~~~~~~v~~a~V 161 (661)
.+.++++||++..++..++.+++..... + . . +..+ ..+...+..++++..++.-+..
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 2347899999988888888888753110 0 0 0 0011 1123334455667777788888
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 156 l~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTD 174 (501)
T ss_pred HhcCCCEEEEeCCcCCCCH
Confidence 9999999999999999986
No 150
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.28 E-value=4.6e-12 Score=126.44 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=99.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----cccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----SSRI 107 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~----~~~~ 107 (661)
|+++.++++.| +...++++++|.+.+|+ ++||+|+||||||||+++|++.. |..|.|.+++... ....
T Consensus 2 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVR----GGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEE----CCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhh
Confidence 56777777766 33568999999999999 99999999999999999999997 7899999998642 1234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhc--ccc----------ccc-cccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKE--GKA----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~--g~~----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
++++++.+..++..++.+++..... +.. +.. ...+...+..++++..++.-+..++.++.+++.||+
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6777777766667788888753211 100 000 011222233444555666666777777777777888
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 155 t~~LD~ 160 (207)
T PRK13539 155 TAALDA 160 (207)
T ss_pred cccCCH
Confidence 888886
No 151
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=5.5e-13 Score=132.64 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=119.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++...++.++| +.+.+++++||.+.+|| +||+.|||||||||...++.++. |+.|.|.+|+.+..
T Consensus 4 ~L~a~~l~K~y----~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 4 TLVAENLAKSY----KKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred EEEehhhhHhh----CCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 34556666666 67889999999999999 99999999999999999999998 89999999998432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccccccc------------------c-ccccccccccccceeeccCccEEEE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV------------------P-IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~------------------P-~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
+..++|.+|++..|...++.+|+....+-..... . ..+..-...++++..++..++.+..
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 2357899999999999999999865432111000 0 0111112234556667778888999
Q ss_pred EehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC
Q 006094 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (661)
Q Consensus 165 EGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~ 205 (661)
++.+++.||++...|.. .+.-++++.+.++.+|.
T Consensus 157 ~P~fiLLDEPFAGVDPi-------aV~dIq~iI~~L~~rgi 190 (243)
T COG1137 157 NPKFILLDEPFAGVDPI-------AVIDIQRIIKHLKDRGI 190 (243)
T ss_pred CCCEEEecCCccCCCch-------hHHHHHHHHHHHHhCCc
Confidence 99999999999999973 34446777777777764
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.27 E-value=3.9e-12 Score=126.58 Aligned_cols=139 Identities=23% Similarity=0.283 Sum_probs=98.0
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------- 104 (661)
++.++...| +...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 2 EIKNLHKSF----GDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred EEEEEEEEE----CCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 344555444 34579999999999999 99999999999999999999998 78999999986321
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhh---ccc---c-----------ccc-cccccccccccccceeeccCccEEEEEe
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~---~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++++|++..++..++.+++.... .+. . ... +..+...+..++++..++.-+..++.++
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 234788999998888778888875321 110 0 000 1112222334445555666667777777
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 155 ~llllDEP~~~LD~ 168 (213)
T cd03262 155 KVMLFDEPTSALDP 168 (213)
T ss_pred CEEEEeCCccCCCH
Confidence 77777888888875
No 153
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.27 E-value=4.3e-12 Score=134.10 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=105.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------S 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~ 105 (661)
++++.++++.| +...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .
T Consensus 2 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLY----GTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEE----CCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHH
Confidence 35677777766 34679999999999999 99999999999999999999998 89999999997431 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc-------cc-------cc-cccccccccccccceeeccCccEEEEEehh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+.+++.+|++.+++..++.+++..... +. .+ .. +..+......++++..++.-+..++-++.+
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 357899999999888899999864221 10 00 00 112223333455566667777778888888
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 155 liLDEPt~gLD~ 166 (301)
T TIGR03522 155 LILDEPTTGLDP 166 (301)
T ss_pred EEEcCCcccCCH
Confidence 888888888886
No 154
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.9e-12 Score=124.94 Aligned_cols=121 Identities=23% Similarity=0.262 Sum_probs=87.1
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------c
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------S 105 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---------~ 105 (661)
+.++...| +...++++++|.+++|+ ++||+|+||||||||++.|++.+ |..|.|.+++.... .
T Consensus 3 ~~~l~~~~----~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (178)
T cd03229 3 LKNVSKRY----GQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75 (178)
T ss_pred EEEEEEEE----CCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHh
Confidence 44444444 33579999999999999 99999999999999999999998 68999999986321 1
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.+++.+|++..++..++.+++... .++++..++.-+..++..+.+++.||+...+|.
T Consensus 76 ~~i~~~~q~~~~~~~~t~~~~l~~~-----------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 76 RRIGMVFQDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred hcEEEEecCCccCCCCCHHHheeec-----------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 3467889998888777888876431 222233334444445555555555777777765
No 155
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.27 E-value=3e-12 Score=127.54 Aligned_cols=140 Identities=20% Similarity=0.224 Sum_probs=98.3
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------- 104 (661)
++.++...|. +...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++....
T Consensus 2 ~~~~l~~~~~---~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 2 EFINVTKTYP---NGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred EEEEEEEEeC---CCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 3445555542 12468999999999999 99999999999999999999998 78999999986321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------cccc-ccccccccccccceeeccCccEEEEEe
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++++|++..|+..++.+++..... +. . ...+ ..+...+..++++..++.-++.++.++
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 1347889999988888888888754211 10 0 0011 112222334445566666667777777
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 156 ~llllDEPt~~LD~ 169 (214)
T cd03292 156 TILIADEPTGNLDP 169 (214)
T ss_pred CEEEEeCCCCcCCH
Confidence 77777888888886
No 156
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.6e-12 Score=132.96 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=102.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.+++..|.. .....++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~~~-~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 3 KILEVENLVFKYEK-ESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred ceEEEEEEEEEcCC-CCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHH
Confidence 46788888877742 123468999999999999 99999999999999999999998 78999999987432
Q ss_pred -ccccccccCCCC-CCchhhHHHHHHhhhccccc----------------cc-cccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAV----------------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~-~~d~~tl~enL~~L~~g~~I----------------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.++++||++. .++..++.+++......... .. ...+...+..++++..++.-++.++.+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 234788999975 46666888888532111000 00 111222333445556666667777778
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 159 p~llllDEPt~~LD~ 173 (277)
T PRK13642 159 PEIIILDESTSMLDP 173 (277)
T ss_pred CCEEEEeCCcccCCH
Confidence 888888888888886
No 157
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.8e-12 Score=142.52 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=106.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 4 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSF----GPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEc----CCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHH
Confidence 478888887776 34578999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc------cc------c-----------ccc-cccccccccccccceeeccC
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE------GK------A-----------VQV-PIYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~------g~------~-----------I~~-P~yd~~~~~r~~~~~~~v~~ 158 (661)
...++++||++..++..++.+++..... +. . +.. ...+...+..++++..++.-
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 1347889999888888888888753110 10 0 000 01223334455566677777
Q ss_pred ccEEEEEehhhhhccccCCCCE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.+..+++.||+...+|.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~ 178 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTN 178 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCH
Confidence 8888888888889999998886
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=6.4e-12 Score=128.69 Aligned_cols=142 Identities=20% Similarity=0.167 Sum_probs=100.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~- 104 (661)
.++++.++...| +...++++++|.+.+|+ ++||+|+||||||||+++|++.+ | ..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 3 FAIETVNLRVYY----GSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred ceEEEEeEEEEe----CCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 367777777666 33569999999999999 99999999999999999999998 4 3899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c-----cc----c-------cc-----cccccccccccccce
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA----V-------QV-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g-----~~----I-------~~-----P~yd~~~~~r~~~~~ 153 (661)
...+++++|++..|+..++.+++..... + .. + .. ...+......++++.
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 1347889999998888888888864211 1 00 0 00 001122223344455
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++-++.+++.||+...+|.
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~ 182 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDP 182 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 556666677777777777888877775
No 159
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=2e-12 Score=129.84 Aligned_cols=140 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCccc---
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYND--- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~--- 103 (661)
.+++.++.. -+|.+.+|++|++.++++. +.+++||||||||||+++|.... | -.|.|.++|.+.
T Consensus 7 ~~~~~~l~~----yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 7 AIEVRDLNL----YYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred eeEecceeE----EECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 345545444 4578899999999999999 99999999999999999998874 3 358999999742
Q ss_pred ------cccccccccCCCCCCchhhHHHHHHhhhc--ccc-------cccc------------ccccccccccccceeec
Q 006094 104 ------SSRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA-------VQVP------------IYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 104 ------~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~-------I~~P------------~yd~~~~~r~~~~~~~v 156 (661)
.++.++++||.|+-|+ +++++|++.-.+ |.. ++.. ..+......++++++++
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 2356899999999999 899999864221 100 1110 12222334567788889
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.+.+++-.++.||+...+|.
T Consensus 159 cIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCc
Confidence 999999999999999999999997
No 160
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.26 E-value=5.9e-12 Score=124.55 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=98.3
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.+++..| +...+++++||.+.+|+ +++|+||||||||||++.|++.+ |..|.|.+++.... .+.
T Consensus 2 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 2 AARNLACSR----GERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred EEEEEEEEE----CCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 344554444 44679999999999999 99999999999999999999998 78999999987421 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhc--ccc---c-------cc-cccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKE--GKA---V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~--g~~---I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
+++.+|++..++..++.+++..... +.. + .. +..+...+..++++..++.-++.++.++.+++.||+
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 154 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEP 154 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6788888777777788888753221 100 0 00 111222333445555666667777778888888888
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 155 t~~LD~ 160 (198)
T TIGR01189 155 TTALDK 160 (198)
T ss_pred CcCCCH
Confidence 888886
No 161
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=4.6e-12 Score=130.00 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=102.7
Q ss_pred CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCccc
Q 006094 30 DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYND 103 (661)
Q Consensus 30 ~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~ 103 (661)
...++++.++...|. ...+++++||.+++|+ +++|+|+||||||||+++|++++ | ..|.|.++|...
T Consensus 4 ~~~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 4 NEAIIETENLNLFYT----DFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred CCceEEEeeeEEEeC----CceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 355888888877762 3468999999999999 99999999999999999999998 4 379999988632
Q ss_pred c---------ccccccccCCCCCCchhhHHHHHHhhhc--cc----c----cc-------c-----cccccccccccccc
Q 006094 104 S---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----VQ-------V-----PIYDFKSSSRIGYR 152 (661)
Q Consensus 104 ~---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~----I~-------~-----P~yd~~~~~r~~~~ 152 (661)
. .+.+++++|++..|+ .++.+++..... +. . +. . ..++......++++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred ccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 1 234788999988885 788888753211 10 0 00 0 11233333445556
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-++.++.++.+++.||+...+|.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDP 183 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 6666667777777888888888888886
No 162
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=6.2e-12 Score=131.40 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=102.7
Q ss_pred Cceeeeecccceeeecc--CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---
Q 006094 31 SDRYEIVPIEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--- 104 (661)
+.|+++.++++.|.... +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 46888889888874211 13469999999999999 99999999999999999999998 78999999986431
Q ss_pred -----ccccccccCCCCC-CchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccE
Q 006094 105 -----SRIIDGNFDDPRL-TDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 -----~~~i~~~fq~p~~-~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~V 161 (661)
.+.++++||+|.. +...++.+++..... +. .... +..+...+..++++..++.-+..
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred cHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 2347889998742 223456666643211 00 0001 11233344455556666777777
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 159 l~~~p~llllDEPt~gLD~ 177 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDP 177 (280)
T ss_pred HHcCCCEEEEeCCcccCCH
Confidence 7778888888888888886
No 163
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.26 E-value=6.9e-12 Score=127.48 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=101.6
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...| +...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++....
T Consensus 2 ~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSF----DGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEc----CCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHH
Confidence 56777777666 33579999999999999 99999999999999999999998 88999999997321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccc-----------------c-------ccc-cccccccccccccceeeccC
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------------A-------VQV-PIYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~-----------------~-------I~~-P~yd~~~~~r~~~~~~~v~~ 158 (661)
...+++.+|++.+++..++.+++....... . +.. +..+......++++..++.-
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 124778999998888888888875421100 0 000 11122223334455556666
Q ss_pred ccEEEEEehhhhhccccCCCCE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (661)
++.++.++.+++.||+...+|.
T Consensus 155 aral~~~p~~lllDEPt~~LD~ 176 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTD 176 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCH
Confidence 6777777777777888887776
No 164
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.26 E-value=4e-12 Score=126.23 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=92.4
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----cccccccccCCCC-CCchhhH
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----SSRIIDGNFDDPR-LTDYDTL 123 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~----~~~~i~~~fq~p~-~~d~~tl 123 (661)
..++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.+++.||++. .+...++
T Consensus 13 ~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 568999999999999 99999999999999999999998 8899999998643 1235788999874 3344688
Q ss_pred HHHHHhhhc--cc---c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 124 LENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 124 ~enL~~L~~--g~---~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+++..... +. . +.. +..+...+..++++..++.-++.++.++.+++.||+...+|.
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 90 REELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 888754211 10 0 001 112222334455566667777777888888888888888886
No 165
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.26 E-value=6.5e-12 Score=129.56 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=102.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCCcccc---
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS--- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~~~~~--- 104 (661)
.++++.+++..| +...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |+ .|.|.++|....
T Consensus 3 ~~l~~~nl~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTF----NQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEe----CCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 478888887766 34578999999999999 99999999999999999999998 54 489999996321
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhcc-------------c----c-------ccc-cccccccccccc
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKEG-------------K----A-------VQV-PIYDFKSSSRIG 150 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~g-------------~----~-------I~~-P~yd~~~~~r~~ 150 (661)
.+.++++||++..|+..++.+++...... . . +.. ...+...+..++
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence 12468899999888878888888532110 0 0 001 112223333444
Q ss_pred cceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++..++.-++.++.++.+++.||+...+|.
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~ 185 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDP 185 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCH
Confidence 555666666777777888888888888886
No 166
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6.4e-12 Score=131.09 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=99.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++++.++++.|. +...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~l~~~~l~~~~~---~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 3 LIETRDLCYSYS---GSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred eEEEEEEEEEeC---CCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 567777777662 12358999999999999 99999999999999999999998 89999999997432
Q ss_pred ccccccccCCCC-CCchhhHHHHHHhhhc--ccc--------------ccc-cccccccccccccceeeccCccEEEEEe
Q 006094 105 SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 ~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~~--------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.++++||++. .+...++.+++..... +.. +.. +..+......++++..++.-+..++.++
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 134688999874 2334577777753111 000 000 1223333445555666666677777777
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 157 ~llilDEPt~gLD~ 170 (277)
T PRK13652 157 QVLVLDEPTAGLDP 170 (277)
T ss_pred CEEEEeCCcccCCH
Confidence 77777888888886
No 167
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.25 E-value=4.4e-12 Score=127.95 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=97.6
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------c
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------S 105 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~ 105 (661)
++.++...| +...+++++||.+++|+ ++||+|+||||||||+++|++.+ |..|.|.+++.... .
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 2 EVSNLNVYY----GQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred EEEeEEEEe----CCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 345555544 34579999999999999 99999999999999999999998 78999999986321 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--ccc--------cc----c-cccccccccccccceeeccCccEEEEEehhhh
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------VQ----V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------I~----~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
+.+++.+|++..|+..++.+++..... +.. .. . ...+......++++..++.-+..++-++.+++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ill 154 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLL 154 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 347889999998888888888853211 110 00 0 01122222334455555666666677777777
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 155 lDEPt~~LD~ 164 (230)
T TIGR03410 155 LDEPTEGIQP 164 (230)
T ss_pred ecCCcccCCH
Confidence 7888888886
No 168
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.25 E-value=5.3e-12 Score=125.78 Aligned_cols=139 Identities=21% Similarity=0.218 Sum_probs=97.7
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i 108 (661)
++.+++..| +...++++++|.+++|+ +++|+|+||||||||++.|++.+ |..|.|.+++.... ...+
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 2 ELENVTKRF----GNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred EEEeeEEEE----CCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 344555444 33578999999999999 99999999999999999999998 78999999986421 2347
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc--c---cc-----------ccc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~--g---~~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++++|++..++..++.+++..... + .. ... ...+......++++..++.-++.++.++.+++.
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llll 154 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999888877788888753211 1 00 000 011222233445555666666677777777777
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 155 DEPt~~LD~ 163 (213)
T cd03301 155 DEPLSNLDA 163 (213)
T ss_pred cCCcccCCH
Confidence 888888875
No 169
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.25 E-value=3.4e-12 Score=127.80 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=100.2
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.++...|. .+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.
T Consensus 2 ~~~~l~~~~~--~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 2 QIRNLTKTYK--KGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred EEEeeEEEeC--CCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 3455555542 112569999999999999 99999999999999999999998 88999999987421 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhc--cc---c-----------cccc-ccccccccccccceeeccCccEEEEEehhhh
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~--g~---~-----------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
+++++|++..++..++.+++..... +. . ...+ ..+...+..++++..++.-+..++.+..+++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999988887888888754221 10 0 0011 1122233344455666667777788888888
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 157 lDEP~~~LD~ 166 (220)
T cd03263 157 LDEPTSGLDP 166 (220)
T ss_pred ECCCCCCCCH
Confidence 8888888886
No 170
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.25 E-value=5.8e-11 Score=118.77 Aligned_cols=135 Identities=16% Similarity=0.070 Sum_probs=102.3
Q ss_pred HHHHHHHccccc--c--cccceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeec---CCCceeeeeeEEEeeh--
Q 006094 263 DEIKAVMSKEHT--E--TTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVT---DSPFIISPRITFEVSV-- 333 (661)
Q Consensus 263 ~~IravL~~l~~--~--~~~~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~---d~~fi~rp~~ef~V~v-- 333 (661)
..+...|...+. . ....+.|+||..|++++..++.|||+|.. ..+|+++++.. +...+.+.+++..+..
T Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~~~~~E~~~~~~~~~ 88 (196)
T cd07758 11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGANTRYEELTGEAAIAA 88 (196)
T ss_pred HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCcceEEecccHHHHHH
Confidence 345566655443 2 23345599999999999999999999964 78888887765 3334444444444421
Q ss_pred --------------hhHHHHhhcCCeEEEEEEeeeeeeeeC-CEEEEeecccccCcceEEEEe------------ccHHH
Q 006094 334 --------------RLLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQG------------RDRLY 386 (661)
Q Consensus 334 --------------~~~~gL~~LGf~~~a~V~R~re~y~~g-~~~i~lD~ve~Lg~~FveI~g------------~~~~~ 386 (661)
.+.+.|..|||.+.+.+.|.|..|..+ +++|+||+++ +|..|+||+- .+++.
T Consensus 89 ~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~ 167 (196)
T cd07758 89 ALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAK 167 (196)
T ss_pred HHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHH
Confidence 133688999999999999999999999 9999999999 7746999942 36778
Q ss_pred HHHHHHHcCCCCCc
Q 006094 387 VKYVGEQLGLDGSY 400 (661)
Q Consensus 387 V~~~~~~Lgl~g~~ 400 (661)
+.+++++||+.+.|
T Consensus 168 i~~~~~~lg~~~~~ 181 (196)
T cd07758 168 IDELISALMERYLW 181 (196)
T ss_pred HHHHHHHhCCCccc
Confidence 99999999999843
No 171
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.4e-12 Score=129.99 Aligned_cols=141 Identities=13% Similarity=0.164 Sum_probs=100.8
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~- 104 (661)
.++++.+++..| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 11 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 11 PQIKVENLNLWY----GEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred eeEEEeeeEEEe----CCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 477887777765 33568999999999999 99999999999999999999987 3 6899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--ccc-----------cc---c-----cccccccccccccceee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA-----------VQ---V-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~-----------I~---~-----P~yd~~~~~r~~~~~~~ 155 (661)
.+.++++||++..|+ .++.+++..... +.. +. . ...+......++++..+
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 234788999988887 788888853211 100 00 0 01122223344455666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 163 v~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCH
Confidence 6667777778888888888888876
No 172
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.2e-12 Score=127.69 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=100.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-----~g~I~lD~~~~~-- 104 (661)
++++.++++.| +...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |. .|.|.++|....
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYY----GDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEE----CCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 66777777666 23578999999999999 99999999999999999999997 43 699999986421
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhhc--c---cc-cc---------c-------cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-VQ---------V-------PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~~-I~---------~-------P~yd~~~~~r~~~~~~~ 155 (661)
...+++.+|++..++..++.+++..... + .. .. . ...+...+..++++..+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 2247889999988887888888853211 1 00 00 0 01122223344455566
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~ 181 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDP 181 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCH
Confidence 6666777777777777888888876
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=7.8e-12 Score=129.41 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=103.6
Q ss_pred CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc----
Q 006094 30 DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---- 104 (661)
Q Consensus 30 ~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---- 104 (661)
...++++.++...| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 8 ~~~~l~i~~l~~~~----~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 8 SDTTFALRNVSFRV----PGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS 80 (265)
T ss_pred CCceEEEeeEEEEE----CCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH
Confidence 34578888887766 23579999999999999 99999999999999999999998 78999999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc---c------c-----------ccccc-ccccccccccccceeeccCcc
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE---G------K-----------AVQVP-IYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~---g------~-----------~I~~P-~yd~~~~~r~~~~~~~v~~a~ 160 (661)
.+.+++++|++..++..++.+++..... + . .+... ..+...+..++++..++.-+.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 2347888998888777788888763110 0 0 00000 122223344555666666677
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 161 al~~~p~lllLDEPt~~LD~ 180 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDI 180 (265)
T ss_pred HHhcCCCEEEEcCCcccCCH
Confidence 77777777778888888876
No 174
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.25 E-value=1.2e-11 Score=121.62 Aligned_cols=163 Identities=19% Similarity=0.215 Sum_probs=107.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc----c-c-------ccccc-ccCCCCCCchhhHHHHH----Hhh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----S-S-------RIIDG-NFDDPRLTDYDTLLENI----RGL 130 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~----~-~-------~~i~~-~fq~p~~~d~~tl~enL----~~L 130 (661)
+|||+|+.||||||+++.|.... +...++.|.... . . ..++- .+.....++...+.+.+ ..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 48999999999999999999874 366888887621 1 0 01111 12223344544444333 122
Q ss_pred hccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHH
Q 006094 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (661)
Q Consensus 131 ~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeV 210 (661)
..-+.+.+|.+......... .. .....+++++.+++++..+...||..|||++|.++++.|.+.|+ |.+.+++
T Consensus 80 ~~le~ilhP~i~~~i~~~i~--~~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLA--QF-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHH--Hh-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 22345666755443332211 01 01225899999999988888999999999999999887777765 8899999
Q ss_pred HHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 211 i~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
.+++..+ .+.+ ..+..||++|.|+++++
T Consensus 153 ~~r~~~q-~~~~-----~~~~~ad~vI~N~~~~e 180 (188)
T TIGR00152 153 QKRLASQ-MDIE-----ERLARADDVIDNSATLA 180 (188)
T ss_pred HHHHHhc-CCHH-----HHHHhCCEEEECCCCHH
Confidence 8888655 3332 33578999999998653
No 175
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.25 E-value=5.9e-12 Score=125.31 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=91.3
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCC-CCch
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR-LTDY 120 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~-~~d~ 120 (661)
..++++++|.+++|+ ++||+||||||||||+++|++.+ |+.|.|.+++.... .+.+++.+|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 568999999999999 99999999999999999999998 78999999986321 234678899874 3455
Q ss_pred hhHHHHHHhhhc--cc---c-----------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 121 DTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 121 ~tl~enL~~L~~--g~---~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.+++..... +. . ... ...+...+..++++..++.-++.++.++.+++.||+...+|.
T Consensus 91 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 167 (211)
T cd03225 91 PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167 (211)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 677777743110 00 0 000 111222334455566666777777778888888888888886
No 176
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.7e-12 Score=145.00 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=110.5
Q ss_pred ceeeeecccceeeecc-------CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc
Q 006094 32 DRYEIVPIEDTLSFEK-------GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~-------g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~ 103 (661)
.++++.++.+.|.... +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 5788999888774211 12579999999999999 99999999999999999999998 7899999998632
Q ss_pred ----------cccccccccCCC--CCCchhhHHHHHHhhh--cc----c-----------ccccc--ccccccccccccc
Q 006094 104 ----------SSRIIDGNFDDP--RLTDYDTLLENIRGLK--EG----K-----------AVQVP--IYDFKSSSRIGYR 152 (661)
Q Consensus 104 ----------~~~~i~~~fq~p--~~~d~~tl~enL~~L~--~g----~-----------~I~~P--~yd~~~~~r~~~~ 152 (661)
..+.++++||++ .+++..++.+++.... .+ . .+..+ ..+...+..++++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 123578999997 4677778888775311 01 0 01121 2344455667777
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-+..++.+..+++.||+...+|.
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 7888888889999999999999999987
No 177
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.24 E-value=9.3e-12 Score=125.12 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=98.9
Q ss_pred eeeeecccceeeec---cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecC--Cc--cc-
Q 006094 33 RYEIVPIEDTLSFE---KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD--NY--ND- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~---~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD--~~--~~- 103 (661)
|+++.++.+.|... .....++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++ +. ..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 46677777777321 112578999999999999 99999999999999999999998 788999987 31 11
Q ss_pred ----------cccccccccCCCCCCchhhHHHHHHhh-h-ccc---c-----------ccccc--cccccccccccceee
Q 006094 104 ----------SSRIIDGNFDDPRLTDYDTLLENIRGL-K-EGK---A-----------VQVPI--YDFKSSSRIGYRTLE 155 (661)
Q Consensus 104 ----------~~~~i~~~fq~p~~~d~~tl~enL~~L-~-~g~---~-----------I~~P~--yd~~~~~r~~~~~~~ 155 (661)
..+.+++++|++..++..++.+++... . .+. . ...+. .+......++++..+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQR 157 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH
Confidence 013478899999888877787776531 1 110 0 00110 122233344455556
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 158 l~laral~~~p~llllDEPt~~LD~ 182 (224)
T TIGR02324 158 VNIARGFIADYPILLLDEPTASLDA 182 (224)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCH
Confidence 6666677777777777888887775
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7.4e-12 Score=129.67 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=100.7
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~ 104 (661)
..++++.+++..|. ...++++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 19 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 19 EHILEVKDLSIYYG----EKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CceEEEEEEEEEeC----CceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 45788888877662 3568999999999999 99999999999999999999974 37899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc---c-----cc-------c-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----VQ-------V-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---~-----I~-------~-----P~yd~~~~~r~~~~~ 153 (661)
.+.+++++|++.+|+. ++.+++..... +. . +. . ...+...+..++++.
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 2347899999988874 78887753211 00 0 00 0 011222333445556
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~ 197 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDP 197 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCH
Confidence 666667777777777777888888886
No 179
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6.8e-12 Score=128.28 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=99.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~- 104 (661)
.|+++.++...|. ...++++++|.+++|+ +++|+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~----~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYN----KKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEEC----CeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 4678888877663 3468999999999999 99999999999999999999973 4 3799999986321
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--cc----cccc----------------ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQV----------------PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~~----------------P~yd~~~~~r~~~~~~ 154 (661)
.+.+++++|++..|+ .++.+++..... +. .... ...+...+..++++..
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH
Confidence 234788999998887 688888863211 10 0000 0112222334445555
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-+..++.++.+++.||+...+|.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDP 181 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCH
Confidence 66666667777777777888877775
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=127.02 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=102.0
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~ 104 (661)
...+++.+++..|. ...++++++|.+.+|+ ++||+|+||||||||+++|+++++ +.|.|.++|....
T Consensus 2 ~~~l~~~nl~~~~~----~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 2 NNKVKLEQLNVHFG----KNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred CcEEEEEEEEEEeC----CeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 34677888877763 3569999999999999 999999999999999999999972 4799999996431
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhh-c-c----c----ccc-------c-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLK-E-G----K----AVQ-------V-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~-~-g----~----~I~-------~-----P~yd~~~~~r~~~~~ 153 (661)
.+.++++||++..++..++.+++.... . + . .+. . ...+......++++.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 75 DRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154 (252)
T ss_pred cccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHH
Confidence 234788999999888888888885311 0 1 0 000 0 001112233444555
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~ 181 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDP 181 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 666667777778888888888888886
No 181
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=4.4e-12 Score=128.62 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=103.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++.-. ||...+|++|||.+++|+ +++|+|+||+||||+++.|+++. +..|.|.++|.+..
T Consensus 2 ~mL~v~~l~~~----YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAG----YGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeec----ccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHH
Confidence 36666666554 478999999999999999 99999999999999999999999 57899999998432
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhh---hccccc-c---------ccc----cccccccccccceeeccCccEEEEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGL---KEGKAV-Q---------VPI----YDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L---~~g~~I-~---------~P~----yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
+..+++++|....|+..++.|||.-- ...+.. . .|. .+..-++.++++++.++.++.++-.
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 23478999999999999999999631 111111 0 122 2223344556666667777777777
Q ss_pred ehhhhhccccCCC
Q 006094 166 GIYALSEKLRPLI 178 (661)
Q Consensus 166 GilaL~deLr~ll 178 (661)
+.+++.||+...+
T Consensus 155 PklLLLDEPs~GL 167 (237)
T COG0410 155 PKLLLLDEPSEGL 167 (237)
T ss_pred CCEEEecCCccCc
Confidence 7777777665444
No 182
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=8.1e-12 Score=127.28 Aligned_cols=139 Identities=20% Similarity=0.160 Sum_probs=100.0
Q ss_pred eeecccceeeeccCc-eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------c
Q 006094 35 EIVPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (661)
Q Consensus 35 ei~~l~~~~s~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~ 105 (661)
++.++...| +. ..+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... .
T Consensus 2 ~~~~l~~~~----~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 2 EFENVTKRY----GGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74 (242)
T ss_pred EEEEEEEEe----CCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhh
Confidence 344555444 23 568999999999999 99999999999999999999998 78999999986321 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--cc--------------ccccc---ccccccccccccceeeccCccEEEEEe
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP---IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~P---~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
..+++++|++..++..++.+++..... +. .+..+ ..+......++++..++.-++.++-+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 347889999988888888888853211 10 01111 112223334455666677777788888
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 155 ~llllDEPt~~LD~ 168 (242)
T cd03295 155 PLLLMDEPFGALDP 168 (242)
T ss_pred CEEEecCCcccCCH
Confidence 88888888888886
No 183
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=128.51 Aligned_cols=142 Identities=14% Similarity=0.104 Sum_probs=102.7
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~ 104 (661)
+.++++.+++..|. ...+++++||.+++|+ +++|+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 17 ~~~l~~~nl~~~~~----~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYG----EKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEEC----CEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 45788888877763 3579999999999999 99999999999999999999997 3 7899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--c-----cc-----------cccc-----ccccccccccccc
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA-----------VQVP-----IYDFKSSSRIGYR 152 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g-----~~-----------I~~P-----~yd~~~~~r~~~~ 152 (661)
+..+++++|++..|+. ++.+++..... + .. +... .++......++++
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 2346889999988874 88888753210 1 00 0000 1122233344556
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-++.++.++.+++.||+...+|.
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 6667777777888888888888888886
No 184
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=6.2e-12 Score=131.05 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=98.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...|. +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ~l~~~~l~~~~~---~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYP---DGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeC---CCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHH
Confidence 456677776663 22458999999999999 99999999999999999999998 78999999996431
Q ss_pred --ccccccccCCCC--CCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEE
Q 006094 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 --~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
...+++.||++. .++ .++.+++..... +. .+.. ...+...+..++++..++.-+..++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 234788999873 343 577787753110 00 0000 1122223344455556666677777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.+..+++.||+...+|.
T Consensus 154 ~~p~llllDEPt~gLD~ 170 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDP 170 (275)
T ss_pred cCCCEEEEeCCCcCCCH
Confidence 78888888888888886
No 185
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=6.1e-12 Score=130.74 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=98.3
Q ss_pred cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccCC
Q 006094 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (661)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq~ 114 (661)
++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... ...+++++|+
T Consensus 34 ~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 34 TGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred cCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 356789999999999999 99999999999999999999998 78999999986321 1347889999
Q ss_pred CCCCchhhHHHHHHhhhc--c--c------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 115 PRLTDYDTLLENIRGLKE--G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 115 p~~~d~~tl~enL~~L~~--g--~------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
+..|+..++.+++..... + . .+.. +..+...+..++++..++.-+..++.++.+++.||+...
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~ 190 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSA 190 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 988887888888754210 0 0 0111 112333344555666677777788888888888999888
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 191 LD~ 193 (269)
T cd03294 191 LDP 193 (269)
T ss_pred CCH
Confidence 886
No 186
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.23 E-value=9.3e-12 Score=128.87 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++.+.|. ...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |+.|.|.++|....
T Consensus 5 ~~~l~i~~l~~~~~----~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYG----KYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred ccEEEEEEEEEEEC----CEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHH
Confidence 45788888877763 3568999999999999 99999999999999999999998 78999999986421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhcc---------c----cc-------cc-cccccccccccccceeeccCccE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKEG---------K----AV-------QV-PIYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------~----~I-------~~-P~yd~~~~~r~~~~~~~v~~a~V 161 (661)
...++++||++..++..++.+++...... . .+ .. ...+......++++..++..++.
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 13478899998888777888877532100 0 00 00 01122233344455556666666
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++..+.+++.||+...+|.
T Consensus 158 l~~~p~llllDEPt~gLD~ 176 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDI 176 (265)
T ss_pred HhcCCCEEEEeCccccCCH
Confidence 7777777777888887775
No 187
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=7.7e-12 Score=128.52 Aligned_cols=141 Identities=12% Similarity=0.133 Sum_probs=100.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 2 ~l~~~~l~~~~----~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGY----GTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEE----CCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHH
Confidence 56777776665 34579999999999999 99999999999999999999998 78999999986321
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc------c---c----c-------ccc-cccccccccccccceeeccCccEEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE------G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~------g---~----~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
.+.++++||++..++..++.+++..... + . . ... ...+...+..++++..++.-+..++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 2347888998887776678777753110 0 0 0 000 0112223334455566666677777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 155 ~~p~llllDEP~~~LD~ 171 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDI 171 (255)
T ss_pred cCCCEEEEcCCcccCCH
Confidence 78888888888888886
No 188
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=6.8e-12 Score=131.21 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=103.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++...|. .+...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~--~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYP--DAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeC--CCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH
Confidence 4778888887763 123458999999999999 99999999999999999999998 89999999997421
Q ss_pred -ccccccccCCCC-CCchhhHHHHHHhhhccc--c-------c-------c-ccccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPR-LTDYDTLLENIRGLKEGK--A-------V-------Q-VPIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~-~~d~~tl~enL~~L~~g~--~-------I-------~-~P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.++++||++. .+...++.+++....... . + . .+..+......++++..++.-++.++.+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 234789999974 566678888885421100 0 0 0 0112223334455556666667777777
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 159 p~lllLDEPt~gLD~ 173 (279)
T PRK13635 159 PDIIILDEATSMLDP 173 (279)
T ss_pred CCEEEEeCCcccCCH
Confidence 888888888888876
No 189
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.23 E-value=1.1e-11 Score=126.67 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-----~g~I~lD~~~~~-- 104 (661)
|+++.++...| +...+++++||.+++|+ +++|+|+||||||||++.|++++ |. .|.|.++|....
T Consensus 1 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFY----GEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEE----CCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccc
Confidence 35666666655 33568999999999999 99999999999999999999998 66 899999987431
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhh--cc----cc-----------ccc-----cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLK--EG----KA-----------VQV-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~--~g----~~-----------I~~-----P~yd~~~~~r~~~~~~~ 155 (661)
.+.++++||++.+++ .++.+++.... .+ .. +.. ...+...+..++++..+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred ccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 234788999998888 88888875321 11 00 000 11222233445555666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-+..++.++.+++.||+...+|.
T Consensus 153 v~laral~~~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDP 177 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6666777777777777888888875
No 190
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.23 E-value=2.8e-11 Score=136.34 Aligned_cols=184 Identities=18% Similarity=0.176 Sum_probs=120.5
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc----cccccccCCCCCCchhhH
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTL 123 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~----~~i~~~fq~p~~~d~~tl 123 (661)
|....++|+.+.. ++. +|+|.|||||||||+++.|+..+ +...++.+.++... ...+++++++..+ ..+
T Consensus 270 g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l 342 (512)
T PRK13477 270 GSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AEL 342 (512)
T ss_pred CCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHH
Confidence 5567889998865 444 99999999999999999999988 35566666665431 1122333332221 122
Q ss_pred HHHHHhhh-----cccccccccccccccccccc--------------------ceeeccCccEEEEEehhhhhccccCCC
Q 006094 124 LENIRGLK-----EGKAVQVPIYDFKSSSRIGY--------------------RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 124 ~enL~~L~-----~g~~I~~P~yd~~~~~r~~~--------------------~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
.+++.... .+..+..+.++...+-+... .+.......-+|+||-.+.. .+.+..
T Consensus 343 ~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~A 421 (512)
T PRK13477 343 LSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDA 421 (512)
T ss_pred HhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCC
Confidence 22222211 12346666666655443211 11112233348999988763 566778
Q ss_pred CEEEEEEcCchhHHHHHHHHHHHhhCC---CHHHHHHHHHhhcccchhhccCCCCCC-ceEEEECC
Q 006094 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIINK 240 (661)
Q Consensus 179 DlkIfVdad~diRLiRRI~RDi~eRG~---s~EeVi~q~~~~v~P~~~~fIeP~k~~-ADIII~N~ 240 (661)
|+|||++++.++|..||..+.. .||. +.+.+.+.+.++...+..+.+.|.... ++++|+++
T Consensus 422 dlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs 486 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITD 486 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECC
Confidence 9999999999999888876643 4564 478999999998888888999998877 55777644
No 191
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-11 Score=128.07 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=98.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++.+.| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~l~~~~l~~~~----~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRL----GGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEe----CCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHh
Confidence 56677776666 33568999999999999 99999999999999999999998 78999999986321
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEE----
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI---- 163 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVI---- 163 (661)
...+++.+|++..++..++.+++..... +. . +.. ...+...+..++++..++..+..++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 1346789999887666788888754211 00 0 000 0112223334445555566666666
Q ss_pred --EEehhhhhccccCCCCE
Q 006094 164 --IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 --VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 155 ~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred cCCCCCEEEEeCCcccCCH
Confidence 36667777888888876
No 192
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-11 Score=128.70 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=100.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++...|.. ....+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~~~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQS--DASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CceEEEEEEEEEcCC--CCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 347888888877632 22358999999999999 99999999999999999999998 78999999997431
Q ss_pred --ccccccccCCCC-CCchhhHHHHHHhhhc--c--------------ccccc-cccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g--------------~~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++. .++..++.+++..... + +.+.. +..+......++++..++.-++.++.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 234678898874 4554555555432110 0 00001 12233334445555666666777777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 160 ~p~lllLDEPt~~LD~ 175 (269)
T PRK13648 160 NPSVIILDEATSMLDP 175 (269)
T ss_pred CCCEEEEeCCcccCCH
Confidence 7777777888888886
No 193
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.23 E-value=8.5e-12 Score=123.95 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=98.4
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.++++.| +...++++++|.+++|+ ++||+|+||||||||++.|++.+ |..|.|.+++.... .+.
T Consensus 2 ~i~~l~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 2 EADELTCER----DGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred EEEEEEEEe----CCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 345555554 34578999999999999 99999999999999999999998 78999999886421 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhccc----------cccccc-cccccccccccceeeccCccEEEEEehhhhhccccC
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKEGK----------AVQVPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~g~----------~I~~P~-yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (661)
+++.+|++..++..++.+++....... ....+. .+...+..++++..++.-++.++.++.+++.||+..
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 678888888877788888875432100 011111 122223344455666666777777888888888888
Q ss_pred CCCE
Q 006094 177 LIDL 180 (661)
Q Consensus 177 llDl 180 (661)
.+|.
T Consensus 155 ~LD~ 158 (201)
T cd03231 155 ALDK 158 (201)
T ss_pred CCCH
Confidence 8886
No 194
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=7.9e-12 Score=130.90 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=101.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.+++..|. +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~---~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYS---DGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeC---CCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchH
Confidence 4788888888773 23468999999999999 99999999999999999999998 78999999997431
Q ss_pred ---ccccccccCCCC-CCchhhHHHHHHhhhc--ccc--------------ccc-cccccccccccccceeeccCccEEE
Q 006094 105 ---SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ---~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~~--------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
...++++||++. .+...++.+++..... +.. +.. ...+......++++..++..++.++
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 134788999874 2334578888753211 100 000 0112223334455566666677777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 158 ~~p~lLilDEPt~gLD~ 174 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDP 174 (283)
T ss_pred cCCCEEEEeCCccCCCH
Confidence 78888888888888886
No 195
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1e-11 Score=127.84 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=100.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~ 104 (661)
..|+++.++...|. ...++++++|.+.+|+ +++|+|+||||||||+++|++.++ ..|.|.++|....
T Consensus 10 ~~~l~i~~l~~~~~----~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 10 QEVYQINGMNLWYG----QHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CceEEEeeEEEEEC----CeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 35788888887763 3568999999999999 999999999999999999999872 4799999987431
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc----c----c-------cc-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----V-------QV-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~----I-------~~-----P~yd~~~~~r~~~~~ 153 (661)
...+++++|++..|+. ++.+++..... +. . + .. ...+......++++.
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred ccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 1347889999988874 88888753211 10 0 0 00 001222223344555
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDP 188 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 556666677777777777888888876
No 196
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.23 E-value=4.1e-12 Score=138.84 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=98.1
Q ss_pred ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc----ccc-----------ccccc
Q 006094 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------SRIID 109 (661)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~----~~~-----------~~~i~ 109 (661)
.+|...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+||. ... .+.++
T Consensus 33 ~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred hhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 3467789999999999999 99999999999999999999998 88999999984 110 13588
Q ss_pred cccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
++||++.+|++.++.+|+..... +. .+.. +..+...+..++++..++..++.++.++.+++.|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999999864221 10 0011 1123333445556666676677777777777778
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 190 EPts~LD~ 197 (382)
T TIGR03415 190 EPFSALDP 197 (382)
T ss_pred CCCccCCH
Confidence 88877775
No 197
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=126.87 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=98.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~-- 104 (661)
|+++.+++..| +...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 3 IIEIENFSAYY----GEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred eEEEEeeEEEe----CCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 67777777766 23568999999999999 999999999999999999999873 6899999986321
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhhc--cc----cccc----------------cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQV----------------PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~~----------------P~yd~~~~~r~~~~~~~ 155 (661)
.+.+++.||++..++ .++.+++..... +. .... ...+......++++..+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 235788999998887 688888863211 10 0000 00122222334445555
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-+..++..+.+++.||+...+|.
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~ 179 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDP 179 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCH
Confidence 6666666777777777888777775
No 198
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.23 E-value=9.1e-12 Score=129.20 Aligned_cols=146 Identities=13% Similarity=0.234 Sum_probs=99.2
Q ss_pred ceeeeecccceeeec-----cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFE-----KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~-----~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~- 104 (661)
.|+++.++++.|... .+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 578899998888421 123469999999999999 99999999999999999999998 78999999986321
Q ss_pred ------ccccccccCCCC--CCchhhHHHHHHhhh-cc----------------ccccc-c-ccccccccccccceeecc
Q 006094 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLK-EG----------------KAVQV-P-IYDFKSSSRIGYRTLEVP 157 (661)
Q Consensus 105 ------~~~i~~~fq~p~--~~d~~tl~enL~~L~-~g----------------~~I~~-P-~yd~~~~~r~~~~~~~v~ 157 (661)
.+.+++++|++. .++..++.+++.... .. +.+.. + ..+......++++..++.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 134778888874 344445555543210 00 00111 1 112222334455556666
Q ss_pred CccEEEEEehhhhhccccCCCCE
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDl 180 (661)
-+..++.++.+++.||+...+|.
T Consensus 160 laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDM 182 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCH
Confidence 66777777777777888887775
No 199
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=5.5e-12 Score=130.95 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=96.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.+++..| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ml~~~~l~~~~----~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRY----QDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEc----CCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHH
Confidence 46677777666 23468999999999999 99999999999999999999998 78999999986421
Q ss_pred --ccccccccCCCCC-CchhhHHHHHHhhhc--cc---c-----------ccccc-cccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPRL-TDYDTLLENIRGLKE--GK---A-----------VQVPI-YDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~~-~d~~tl~enL~~L~~--g~---~-----------I~~P~-yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++.. +...++.+++..... +. . +.... .+......++++..++.-+..++.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 1347788998753 233345555543110 10 0 00110 122223344556666667777777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 154 ~p~lllLDEPt~~LD~ 169 (271)
T PRK13638 154 QARYLLLDEPTAGLDP 169 (271)
T ss_pred CCCEEEEeCCcccCCH
Confidence 8888888888888885
No 200
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.22 E-value=6.9e-12 Score=125.12 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=95.1
Q ss_pred ecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--cccccccccC
Q 006094 37 VPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFD 113 (661)
Q Consensus 37 ~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i~~~fq 113 (661)
.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.++|... ..+.+++++|
T Consensus 3 ~~l~~~~----~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 3 EDLTVSY----GGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred ccceeEE----CCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 3444444 33568999999999999 99999999999999999999998 8899999998642 2345788999
Q ss_pred CCCCCc--hhhHHHHHHhhhcc---------c----c-------ccc-cccccccccccccceeeccCccEEEEEehhhh
Q 006094 114 DPRLTD--YDTLLENIRGLKEG---------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 114 ~p~~~d--~~tl~enL~~L~~g---------~----~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
++..+. ..++.+++...... . . ... +..+...+..++++..++.-++.++.++.+++
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 876532 25788877532110 0 0 000 01122233344555666666777777888888
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 156 lDEPt~~LD~ 165 (213)
T cd03235 156 LDEPFAGVDP 165 (213)
T ss_pred EeCCcccCCH
Confidence 8888888886
No 201
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.22 E-value=2.8e-12 Score=149.53 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=115.9
Q ss_pred CCcccccccchhhhcccC-------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 12 PRRRPGLLRDQVQLVKKK-------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 12 ~~r~~~ll~~~~~l~~~~-------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
-+|...+++.+++-...+ -...+++++++.+|..+ ...+|+++|+.+++|+ .|||+|+||||||||+|
T Consensus 443 ~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~--~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~K 517 (709)
T COG2274 443 LERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD--DPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLK 517 (709)
T ss_pred HHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC--CcchhhceeEEeCCCC---EEEEECCCCCCHHHHHH
Confidence 356666666666533222 12346677776666332 2379999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc----------------ccc-ccc
Q 006094 85 KVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP 139 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I-~~P 139 (661)
.|.+++ |..|.|.+||++. .++.++++.|++.+|. .++.||+..-... +.| ..|
T Consensus 518 LL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP 596 (709)
T COG2274 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596 (709)
T ss_pred HHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 999999 9999999999953 2456889999988875 4677776521111 111 122
Q ss_pred -ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 140 -IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 140 -~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.|+...+ ..++++.+++.-++.++-++..++.||....+|.
T Consensus 597 ~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642 (709)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCH
Confidence 2333332 2456777888888888888888888998888875
No 202
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.22 E-value=1.3e-11 Score=122.73 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=115.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc--------cccccccccCCC-----CCCchhhHHHHH----H
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND--------SSRIIDGNFDDP-----RLTDYDTLLENI----R 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~--------~~~~i~~~fq~p-----~~~d~~tl~enL----~ 128 (661)
+++||++|++||||||+++.+.+. ++.+|+.|-... ..+.+.-.|.+. ...+...+.+-+ .
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~--G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKAL--GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHc--CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 479999999999999999999976 566888886411 001121222221 223333333322 1
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
+....+.+.+|.+....-.... .+-+.+.+++++|-+++|+..+..++-.+|.|.||.++.+.|-+.|| +.+.+
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~--~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse~ 152 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEIL--KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERD----ELSEE 152 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhc----cccHH
Confidence 2223456778876555433222 23467889999999999999899999999999999999998888887 77888
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
+..++.. ..+|-.+ ..+.||+||.|+++++
T Consensus 153 dAe~Rl~-sQmp~~~-----k~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 153 DAENRLQ-SQMPLEK-----KCELADVVIDNNGSLE 182 (225)
T ss_pred HHHHHHH-hcCCHHH-----HHHhhheeecCCCChH
Confidence 8888774 3344433 3689999999999775
No 203
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.3e-11 Score=126.47 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=99.8
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-----~g~I~lD~~~~~ 104 (661)
..++++.++...| +...++++++|.+.+|+ ++||+|+||||||||++.|++++ |. .|.|.++|....
T Consensus 2 ~~~l~~~~l~~~~----~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 2 DPKIKIRGVNFFY----HKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred CceEEEEEEEEEE----CCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence 3467777777766 23568999999999999 99999999999999999999998 54 599999886321
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--ccc----c-----------cc-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA----V-----------QV-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~----I-----------~~-----P~yd~~~~~r~~~~~ 153 (661)
.+.+++++|++..|+. ++.+++..... +.. + .. ...+......++++.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHH
Confidence 2347899999988874 88888753211 100 0 00 011222233444555
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~ 180 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDP 180 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 666666777777777777888887776
No 204
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.22 E-value=1e-11 Score=122.94 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=96.6
Q ss_pred eeeecccceeeecc--CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCCccc----c
Q 006094 34 YEIVPIEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYND----S 104 (661)
Q Consensus 34 iei~~l~~~~s~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~~~~----~ 104 (661)
+++.+++..|.... ....++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+|+... .
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 56677777663210 02568999999999999 99999999999999999999987 4789999998743 2
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+.+++.+|++..++..++.+++..... . . ..++++..++.-++.++.+..+++.||+...+|.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~---~----~-----~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAK---L----R-----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHH---h----c-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 3457889999988888899998864221 0 0 2333444555555666666666666788777775
No 205
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8.1e-12 Score=130.19 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=98.4
Q ss_pred eeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 34 YEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
+++.+++..|..... ...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccC
Confidence 566677666632111 1358999999999999 99999999999999999999998 88999999986321
Q ss_pred ----ccccccccCCC--CCCchhhHHHHHHhhhc--c---cc-----------cccc--ccccccccccccceeeccCcc
Q 006094 105 ----SRIIDGNFDDP--RLTDYDTLLENIRGLKE--G---KA-----------VQVP--IYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ----~~~i~~~fq~p--~~~d~~tl~enL~~L~~--g---~~-----------I~~P--~yd~~~~~r~~~~~~~v~~a~ 160 (661)
.+.+++++|++ ..++ .++.+++..... + .. .... ..+......++++..++.-+.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 13468889987 3454 577887753210 0 00 0110 112223344555666677777
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 159 al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred HHHcCCCEEEEeCCcccCCH
Confidence 78888888888888888886
No 206
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.22 E-value=1.3e-11 Score=125.22 Aligned_cols=139 Identities=13% Similarity=0.163 Sum_probs=96.5
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCCcccc-------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~~~~~------- 104 (661)
++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 2 KIKDLHVSV----EDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred eEeeEEEEE----CCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 345555555 34578999999999999 99999999999999999999983 68999999986321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhcc------------c----c-------cccc--ccccccc-cccccceeecc
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEG------------K----A-------VQVP--IYDFKSS-SRIGYRTLEVP 157 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g------------~----~-------I~~P--~yd~~~~-~r~~~~~~~v~ 157 (661)
...+++++|++..++..++.+++...... . . ...+ ..+.... ..++++..++.
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 12267889999888877777776432110 0 0 0111 1122222 24445556666
Q ss_pred CccEEEEEehhhhhccccCCCCE
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDl 180 (661)
-+..++.++.+++.||+...+|.
T Consensus 155 la~al~~~p~llllDEPt~~LD~ 177 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDI 177 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCH
Confidence 67777778888888888888886
No 207
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.3e-11 Score=126.38 Aligned_cols=141 Identities=15% Similarity=0.119 Sum_probs=97.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~- 104 (661)
.++++.+++..|. ...+++++||.+.+|+ +++|+|+||||||||+++|++.. | ..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYG----EKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEEC----CeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 4677888877663 3568999999999999 99999999999999999999986 3 6799999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--cc--c------cc----c--------ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--A------VQ----V--------PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--~------I~----~--------P~yd~~~~~r~~~~~~ 154 (661)
...+++++|++..|+ .++.+++..... +. . +. . ...+......++++..
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 234789999998887 788888863211 10 0 00 0 0011222233444445
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-+..++....+++.||+...+|.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDP 180 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 55555556666666666777777775
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.5e-11 Score=128.03 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=103.0
Q ss_pred hhcccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEe
Q 006094 24 QLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVIT 97 (661)
Q Consensus 24 ~l~~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~ 97 (661)
.+...+...++++.++...|. ...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.
T Consensus 15 ~~~~~~~~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 87 (271)
T PRK14238 15 KIETAPKKVVFDTQNLNLWYG----EDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL 87 (271)
T ss_pred hhccCCCceEEEEeeeEEEEC----CcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE
Confidence 344444456888888877663 3468999999999999 99999999999999999999987 3789999
Q ss_pred cCCcccc---------ccccccccCCCCCCchhhHHHHHHhhhc--cc----cccc----------------cccccccc
Q 006094 98 MDNYNDS---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQV----------------PIYDFKSS 146 (661)
Q Consensus 98 lD~~~~~---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~~----------------P~yd~~~~ 146 (661)
++|.... .+.+++.||++..|+ .++.+++..... +. .... ...+....
T Consensus 88 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 166 (271)
T PRK14238 88 YRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY 166 (271)
T ss_pred ECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcc
Confidence 9986321 234788999998887 488888753210 10 0000 00112223
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++++..++.-+..++.++.+++.||+...+|.
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~ 200 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP 200 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 3344555556666666777777777888877776
No 209
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.21 E-value=1.4e-11 Score=126.59 Aligned_cols=139 Identities=16% Similarity=0.187 Sum_probs=95.7
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+
T Consensus 3 ~~~~l~~~~----~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 3 RLSRVSWSA----GGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred eEEeEEEEE----CCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 455555554 34579999999999999 99999999999999999999998 78999999986321 12
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc------c----c---cc-------cc-cccccccccccccceeeccCccEEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE------G----K---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~------g----~---~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+++.+|++..+...++.+++..... + . .+ .. ...+......++++..++.-+..++.+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 46788998876666788888753110 0 0 00 00 011222233444455556666667777
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 156 p~llllDEPt~~LD~ 170 (256)
T TIGR03873 156 PKLLLLDEPTNHLDV 170 (256)
T ss_pred CCEEEEcCccccCCH
Confidence 777777888887775
No 210
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.21 E-value=1.3e-11 Score=133.39 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=93.9
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----------cccccccccCCCCCCchhh
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----------~~~~i~~~fq~p~~~d~~t 122 (661)
+++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.++++||++.+|+..+
T Consensus 15 ~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 8999999999 99999999999999999999998 7899999998632 1234789999999999889
Q ss_pred HHHHHHhhhcc---cc-----------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 123 LLENIRGLKEG---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 123 l~enL~~L~~g---~~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.+++...... .. ... +..+...+..++++..++.-++.++.++.+++.||+...+|.
T Consensus 92 v~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 92 VRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 (354)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 99998642111 00 000 112333344556677777778888888888888999988886
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.4e-11 Score=125.95 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=98.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~-- 104 (661)
++++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++.. | ..|.+.++|....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 3 KFNIENLDLFY----GENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred eEEEeccEEEE----CCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 56777777766 23568999999999999 99999999999999999999987 3 4899999986421
Q ss_pred ------ccccccccCCCCCCchhhHHHHHHhhhc--cc----cc-----------cc-----cccccccccccccceeec
Q 006094 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AV-----------QV-----PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 ------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I-----------~~-----P~yd~~~~~r~~~~~~~v 156 (661)
...++|++|++..|+ .++.+++..... +. .. .. +..+...+..++++..++
T Consensus 76 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 76 IDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred cchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 234788999998887 688888753211 10 00 00 011222233444555566
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-++.++.+..+++.||+...+|.
T Consensus 155 ~laral~~~p~llllDEP~~~LD~ 178 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDP 178 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCH
Confidence 666677777777777888877776
No 212
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.21 E-value=1.4e-11 Score=123.81 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=98.0
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---cccccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDG 110 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---~~~i~~ 110 (661)
++.++.+.| +...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++
T Consensus 2 ~l~~v~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~ 74 (223)
T TIGR03740 2 ETKNLSKRF----GKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 (223)
T ss_pred EEEeEEEEE----CCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE
Confidence 344555544 33578999999999999 99999999999999999999998 78999999986322 235778
Q ss_pred ccCCCCCCchhhHHHHHHhhhc--cc---c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 111 NFDDPRLTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~~--g~---~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
.||++..++..++.+++..... +. . ... +..+......++++..++.-+..++.++.+++.||+...
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 9999888887788888753211 10 0 000 111222233444555566666777777777777888888
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 155 LD~ 157 (223)
T TIGR03740 155 LDP 157 (223)
T ss_pred CCH
Confidence 876
No 213
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.1e-11 Score=127.76 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=102.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~ 104 (661)
..++++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 11 ~~~l~~~~l~~~~----~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 11 PSKIQVRNLNFYY----GKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CceEEEEEEEEEe----CCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3467788877766 23468999999999999 99999999999999999999997 26899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc---cc-------cc-------cc-----cccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE---GK-------AV-------QV-----PIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~---g~-------~I-------~~-----P~yd~~~~~r~~~~~ 153 (661)
.+.++++||++.+++ .++.+++..... +. .+ .. ...+......++++.
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred ccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 234788999998887 688888753211 10 00 00 001222233445566
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDP 189 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCH
Confidence 667777778888888888888888886
No 214
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.5e-11 Score=125.80 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=99.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~-- 104 (661)
++++.+++..|. ...++++++|.+.+|+ +++|+|+||||||||+++|++.+ | ..|.|.++|....
T Consensus 3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 3 KISVKDLDLFYG----DFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred eEEEEEEEEEEC----CceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 456777776662 3468999999999999 99999999999999999999975 2 5899999986421
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhhc--cc----ccc-----------c-----cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~-----------~-----P~yd~~~~~r~~~~~~~ 155 (661)
+..+++++|++.+++ .++.+++..... +. ... . ...+......++++..+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred ccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 234788999988887 788888753211 10 000 0 00122233344556666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 155 v~laral~~~p~llllDEP~~~LD~ 179 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDP 179 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCH
Confidence 7777778888888888888888886
No 215
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.21 E-value=1.5e-11 Score=127.35 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=99.6
Q ss_pred eeeeecccceeeec-----cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFE-----KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~-----~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-- 104 (661)
|+++.++++.|... .+...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 56777777776321 124679999999999999 99999999999999999999998 88999999986321
Q ss_pred --------ccccccccCCCC--CCchhhHHHHHHhhhc---c--c------------ccccc--ccccccccccccceee
Q 006094 105 --------SRIIDGNFDDPR--LTDYDTLLENIRGLKE---G--K------------AVQVP--IYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 --------~~~i~~~fq~p~--~~d~~tl~enL~~L~~---g--~------------~I~~P--~yd~~~~~r~~~~~~~ 155 (661)
.+.+++++|++. .++..++.+++..... + . ..... ..+......++++..+
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 234788999873 4455667776632110 0 0 01110 1122223344455666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 159 v~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCH
Confidence 6677777778888888888888886
No 216
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.21 E-value=2.2e-12 Score=146.86 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=121.2
Q ss_pred CCCCCCcccccccchhhhcccCCC-----ceeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKKDS-----DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~~~-----~~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
+..+.+|+..++++.+.+...... .-+++.+++..| + ...+++++||.+++|+ .+||+|||||||||
T Consensus 298 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y----~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKST 370 (567)
T COG1132 298 ASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSY----PGKKPVLKDISFSIEPGE---KVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEc----CCCCccccCceEEEcCCC---EEEEECCCCCCHHH
Confidence 456778999999987765554422 225555554444 4 4678999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---c-------------cc-
Q 006094 82 FTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---K-------------AV- 136 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~-------------~I- 136 (661)
+++.|.+++ |..|.|.+||... .++.+++++|++.+|+ .++.+|+...... + .+
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~ 449 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIA 449 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH
Confidence 999999999 7899999998742 2356889999999998 8899998654321 0 01
Q ss_pred ccc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .||...+. .++++.+++.-++.++-+.+.++.||....+|.
T Consensus 450 ~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 450 NLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred hCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 123 25555442 345677777778888888877777887777775
No 217
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.1e-11 Score=124.85 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=99.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~- 104 (661)
.|+++.+++..|. ...+++++||.+.+|+ ++||+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 4 KIITSSDVHLFYG----KFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred ceEEEEeEEEEEC----CeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 3677888877763 3568999999999999 99999999999999999999975 3 3799999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhh--cc--c-c-cc-----------c-----ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLK--EG--K-A-VQ-----------V-----PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~--~g--~-~-I~-----------~-----P~yd~~~~~r~~~~~~ 154 (661)
...+++++|++..++ .++.+++.... .+ . . .. . ...+...+..++++..
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 234788999998887 58888875321 11 0 0 00 0 0112222334445556
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-+..++.++.+++.||+...+|.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDP 181 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 66667777777777777888888876
No 218
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.20 E-value=5.3e-12 Score=140.84 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=117.4
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++.|+| +...||++|+|.+.+|+ +.+++|.||||||||+|.|++.+ |+.|.|.+||....
T Consensus 6 ~~ll~~~~i~K~F----ggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSF----GGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEc----CCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHH
Confidence 3478899999988 67899999999999999 99999999999999999999999 89999999997321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhh---c-cccccccc-----------------cccccccccccceeeccCcc
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLK---E-GKAVQVPI-----------------YDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~---~-g~~I~~P~-----------------yd~~~~~r~~~~~~~v~~a~ 160 (661)
...+..+||+..+++..++.+|+---. . ..-+.++. .+......+.++.+.++.++
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 134678999999999999999984211 1 00011100 00111111112233344444
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
.+..+.-+++.||+...++. .+++..-++.|+++.+|.+.--|.|++.
T Consensus 159 Al~~~arllIlDEPTaaLt~-------~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 159 ALSFDARVLILDEPTAALTV-------KETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHhcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 44444544455666655554 4556666777888888988766666553
No 219
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.20 E-value=1.3e-11 Score=139.41 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=107.5
Q ss_pred Cceeeeecccceeee-ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecC-Ccc-----
Q 006094 31 SDRYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYN----- 102 (661)
Q Consensus 31 ~~~iei~~l~~~~s~-~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD-~~~----- 102 (661)
..|+++.++...|.- +.+...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc
Confidence 458888888887732 1233579999999999999 99999999999999999999998 789999985 421
Q ss_pred c--------cccccccccCCCCCCchhhHHHHHHhhhc-c-------cc-------cccc------ccccccccccccce
Q 006094 103 D--------SSRIIDGNFDDPRLTDYDTLLENIRGLKE-G-------KA-------VQVP------IYDFKSSSRIGYRT 153 (661)
Q Consensus 103 ~--------~~~~i~~~fq~p~~~d~~tl~enL~~L~~-g-------~~-------I~~P------~yd~~~~~r~~~~~ 153 (661)
. ..+.+++++|++.+++..++.+++..... + .. ...+ ..+...+..++++.
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 0 12347899999888888888888853110 0 00 1111 12333445566677
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-+..++.++.+++.||+...+|.
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 777778888888888888999988886
No 220
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1e-11 Score=129.54 Aligned_cols=142 Identities=13% Similarity=0.201 Sum_probs=99.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++++.|. +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ml~~~~l~~~~~---~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYP---DGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcC---CCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHH
Confidence 456667666652 23458999999999999 99999999999999999999998 78999999987431
Q ss_pred -ccccccccCCCCC-CchhhHHHHHHhhhc--c-------cc-------ccc-cccccccccccccceeeccCccEEEEE
Q 006094 105 -SRIIDGNFDDPRL-TDYDTLLENIRGLKE--G-------KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 -~~~i~~~fq~p~~-~d~~tl~enL~~L~~--g-------~~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.+++++|+|.. +...++.+++..... + .. ... ...+...+..++++..++.-+..++-+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 1347889998753 555678887753211 0 00 001 112223334445566666667777778
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 155 p~lllLDEPt~gLD~ 169 (274)
T PRK13644 155 PECLIFDEVTSMLDP 169 (274)
T ss_pred CCEEEEeCCcccCCH
Confidence 888888888888876
No 221
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.4e-11 Score=124.92 Aligned_cols=138 Identities=23% Similarity=0.268 Sum_probs=93.8
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----ccccc
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIID 109 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i~ 109 (661)
+.++...| +...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... ...++
T Consensus 3 ~~~l~~~~----~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (232)
T cd03300 3 LENVSKFY----GGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75 (232)
T ss_pred EEeEEEEe----CCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE
Confidence 44444444 34579999999999999 99999999999999999999998 78899999986321 24578
Q ss_pred cccCCCCCCchhhHHHHHHhhhc--c---c----c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~--g---~----~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
+++|++..|+..++.+++..... + . . +.. +..+......++++..++.-++.++-...+++.|
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999988887788888753211 0 0 0 000 1112222233344445555555566666666667
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 156 EP~~gLD~ 163 (232)
T cd03300 156 EPLGALDL 163 (232)
T ss_pred CCcccCCH
Confidence 77777775
No 222
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.7e-11 Score=137.88 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=107.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
+|+++.++++.| +...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++....
T Consensus 3 ~~l~~~~l~~~~----~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTF----PGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEE----CCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHH
Confidence 477888887776 33569999999999999 99999999999999999999998 78999999885321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc----cc----c-----------ccc-cccccccccccccceeeccCccEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE----GK----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~----g~----~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
.+.+++++|++..++..++.+++..... +. . +.. +..+...+..++++..++.-++.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 2357889999988888888888764210 10 0 001 112333344556677777778888
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 156 ~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSA 173 (501)
T ss_pred HhCCCEEEEcCCCCCCCH
Confidence 888888888999998886
No 223
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.9e-11 Score=124.05 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=99.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~ 104 (661)
..|+++.+++..| +...++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 4 ~~~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 4 EIILSTKNLNLWY----GEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred cceEEEeeeEEEE----CCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 3477887777665 34578999999999999 99999999999999999999985 2 3799999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc----ccccc----------------ccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQVP----------------IYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~~P----------------~yd~~~~~r~~~~~ 153 (661)
.+.+++++|++.+|+. ++.+++..... +. ..... ..+......++++.
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 2347889999988874 88888763211 10 00000 01122223344455
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~ 182 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDP 182 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 556666777777777777888887776
No 224
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.19 E-value=1.8e-11 Score=125.41 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=97.2
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------- 104 (661)
++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 2 RFSDVTKRF----GILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred EEEEEEEEe----CCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 345555554 34579999999999999 99999999999999999999998 78999999986321
Q ss_pred -----------ccccccccCCCCCCchhhHHHHHHhhh---ccc---c-----------ccc-cccccccccccccceee
Q 006094 105 -----------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK---A-----------VQV-PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -----------~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~---~-----------I~~-P~yd~~~~~r~~~~~~~ 155 (661)
.+.++++||++.+++..++.+++.... .+. . +.. +..+......++++..+
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 234778999998888788888875311 010 0 000 11122223344455556
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 155 v~laral~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCH
Confidence 6666667777777777888887775
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.19 E-value=1e-11 Score=140.60 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=107.9
Q ss_pred Cceeeeecccceeeecc-------CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc
Q 006094 31 SDRYEIVPIEDTLSFEK-------GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~-------g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~ 103 (661)
..|+++.+++..|.... +...+++++||.+.+|+ ++||+|+||||||||+++|++++|..|.|.++|...
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 44788888888773211 23578999999999999 999999999999999999999988889999998532
Q ss_pred c----------ccccccccCCCC--CCchhhHHHHHHhhh--cc-----c----c-------cccc--cccccccccccc
Q 006094 104 S----------SRIIDGNFDDPR--LTDYDTLLENIRGLK--EG-----K----A-------VQVP--IYDFKSSSRIGY 151 (661)
Q Consensus 104 ~----------~~~i~~~fq~p~--~~d~~tl~enL~~L~--~g-----~----~-------I~~P--~yd~~~~~r~~~ 151 (661)
. +..++++||++. +++..++.+++.... .+ . . +..+ ..+...+..+++
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 1 234789999873 667778888875311 10 0 0 1111 123334455666
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.-+..++.++.+++.||+...+|.
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 77778888888888888889999988887
No 226
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.7e-11 Score=125.41 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=99.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCcccc----
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS---- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~~~~---- 104 (661)
++++.++...| +...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFY----GKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred ceeeeeeEEEE----CCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 45666776666 33579999999999999 99999999999999999999986 47899999987421
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhhc--c-----c-----------ccccc-----ccccccccccccceeeccC
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----K-----------AVQVP-----IYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~~--g-----~-----------~I~~P-----~yd~~~~~r~~~~~~~v~~ 158 (661)
.+.+++.||++.+|+ .++.+++..... + . .+..+ ..+......++++..++.-
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 234789999998887 588888753210 0 0 00010 0112222334455566666
Q ss_pred ccEEEEEehhhhhccccCCCCE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (661)
++.++.++.+++.||+...+|.
T Consensus 154 aral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCH
Confidence 7777777777777888888875
No 227
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.19 E-value=1.2e-11 Score=121.54 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=90.2
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---------ccccccccCCCC--
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-- 116 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---------~~~i~~~fq~p~-- 116 (661)
...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3468999999999999 99999999999999999999998 78999999986421 124678899873
Q ss_pred CCchhhHHHHHHhhh--ccc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCC
Q 006094 117 LTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (661)
Q Consensus 117 ~~d~~tl~enL~~L~--~g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (661)
.++ .++.+++.... .+. .+.. +..+...+..++++..++.-++.++.++.+++.||+...+|
T Consensus 81 ~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 81 LFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred ccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 443 57777775311 010 0001 11223333444555666666777777888888888888888
Q ss_pred E
Q 006094 180 L 180 (661)
Q Consensus 180 l 180 (661)
.
T Consensus 160 ~ 160 (190)
T TIGR01166 160 P 160 (190)
T ss_pred H
Confidence 5
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.19 E-value=2.5e-11 Score=137.42 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=106.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~- 104 (661)
+|+++.++...|....+...+++++||.+.+|+ ++||+||||||||||+++|++++ | +.|.|.++|....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 478888888877321223579999999999999 99999999999999999999998 3 5899999986321
Q ss_pred ----------ccccccccCCCC--CCchhhHHHHHHhhh---ccc--------------ccccc----cccccccccccc
Q 006094 105 ----------SRIIDGNFDDPR--LTDYDTLLENIRGLK---EGK--------------AVQVP----IYDFKSSSRIGY 151 (661)
Q Consensus 105 ----------~~~i~~~fq~p~--~~d~~tl~enL~~L~---~g~--------------~I~~P----~yd~~~~~r~~~ 151 (661)
.+.++++||++. .++..++.+++.... .+. .+..+ ..+...+..+++
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 135789999875 455566666654211 010 01111 113344556667
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.-++.++.++.+++.||+...+|.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~ 189 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDV 189 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 77788888889999999999999999987
No 229
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3e-11 Score=124.39 Aligned_cols=142 Identities=17% Similarity=0.198 Sum_probs=102.7
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~- 104 (661)
.++++.++...| +...++++++|.+.+|+ ++||+|+||||||||++.|++++ | ..|.|.++|....
T Consensus 3 ~~l~i~~v~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 3 KRIDVKDLNIYY----GSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred ccEEEeeEEEEE----CCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 367777877776 23568999999999999 99999999999999999999997 3 5899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c----cc-----------ccc-----ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g----~~-----------I~~-----P~yd~~~~~r~~~~~~ 154 (661)
.+.++++||++..++..++.+++..... + .. +.. ...+......++++..
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 1347889999988888888888753211 1 00 000 0112223334455566
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++.++.+++.||+...+|.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~ 181 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDP 181 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 66777777888888888888888886
No 230
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.19 E-value=5.1e-11 Score=133.95 Aligned_cols=206 Identities=14% Similarity=0.206 Sum_probs=140.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-C----ceEEecCCccc---
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S----IAVITMDNYND--- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-~----~g~I~lD~~~~--- 103 (661)
.++++.++...|....+...++++|||.+++|+ ++||+|.|||||||+++.|.+++| . .|.|.++|...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 488999999999877666789999999999999 999999999999999999999994 2 68998888621
Q ss_pred --------cccccccccCCCC-CCch-hhHHHHHHhhhc-------------------ccccccccc-ccccccccccce
Q 006094 104 --------SSRIIDGNFDDPR-LTDY-DTLLENIRGLKE-------------------GKAVQVPIY-DFKSSSRIGYRT 153 (661)
Q Consensus 104 --------~~~~i~~~fq~p~-~~d~-~tl~enL~~L~~-------------------g~~I~~P~y-d~~~~~r~~~~~ 153 (661)
..+.++++||+|- +++. .++.+.+..... .-.+..|.. +...|+.++++.
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 1245789999974 3443 555555543211 111223332 457788888877
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCc
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~A 233 (661)
+++-.+..+..++.+++.||+...+|.. ....+..-+++-..+.| .|
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt------~q~qIL~llk~l~~e~g---------------------------~a 207 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVT------TQAQILDLLKDLQRELG---------------------------MA 207 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHH------HHHHHHHHHHHHHHHcC---------------------------cE
Confidence 7777777778888888888988888863 11111111111111223 33
Q ss_pred eEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHcccc
Q 006094 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEH 273 (661)
Q Consensus 234 DIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l~ 273 (661)
=++|.++.......++.+.+++.+..+..+...++|.+..
T Consensus 208 ~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~ 247 (539)
T COG1123 208 VLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ 247 (539)
T ss_pred EEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccC
Confidence 4555555555555666667777777777777888887653
No 231
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.7e-11 Score=127.49 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=102.6
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..|+++.+++..|. .+...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~~~l~~~nl~~~~~--~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 5 SVMIKVENVSFSYP--NSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLK 79 (271)
T ss_pred ceEEEEEeEEEEcC--CCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHH
Confidence 45788888877763 123468999999999999 99999999999999999999998 78999999986421
Q ss_pred --ccccccccCCCC-CCchhhHHHHHHhhhc--c---cc-----------ccc-cccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g---~~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++++|++. .++..++.+++..... + .. +.. +..+......++++..++.-++.++.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 234788999874 5666788888753211 0 00 000 11222233344455566666677777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
+..+++.||+...+|.
T Consensus 160 ~p~lllLDEP~~gLD~ 175 (271)
T PRK13632 160 NPEIIIFDESTSMLDP 175 (271)
T ss_pred CCCEEEEeCCcccCCH
Confidence 7777777888888876
No 232
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.18 E-value=2.1e-11 Score=121.22 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=91.1
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEecCCcccc-------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l--l-p~~g~I~lD~~~~~------- 104 (661)
++.++.+.| +...+++++||.+.+|+ +++|+|+||||||||++.|++. + |..|.|.+||....
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 2 EIKDLHVSV----GGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred eEEEEEEEe----CCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 345555554 23569999999999999 9999999999999999999998 3 78999999986321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
...+++.+|++..++..++.+++... ....++++..++.-++.++..+.+++.||+...+|.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l~~~--------------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFLRYV--------------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHHhhc--------------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 12377889998888877777766211 122333444555556666666777777888877775
No 233
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.18 E-value=3e-11 Score=124.64 Aligned_cols=138 Identities=19% Similarity=0.161 Sum_probs=94.8
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.|+++.++...|. ...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++. ..+++
T Consensus 3 ~~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~----~~i~~ 71 (251)
T PRK09544 3 SLVSLENVSVSFG----QRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----LRIGY 71 (251)
T ss_pred cEEEEeceEEEEC----CceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----cCEEE
Confidence 3677877777662 3468999999999999 99999999999999999999998 78999998762 34778
Q ss_pred ccCCCCCCch--hhHHHHHHhhhc---c------ccccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 111 NFDDPRLTDY--DTLLENIRGLKE---G------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 111 ~fq~p~~~d~--~tl~enL~~L~~---g------~~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
.+|++..++. .++.+++..... . +.+.. ...+......++++..++.-+..++.++.+++.||+...+
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred eccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 8888766543 244444321000 0 00001 1122233344455566666677777777777888888888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 152 D~ 153 (251)
T PRK09544 152 DV 153 (251)
T ss_pred CH
Confidence 86
No 234
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.18 E-value=2.7e-11 Score=124.76 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=97.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc-----cc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~-----~~ 104 (661)
..|+++.++...|. ...+++++||.+.+|+ ++||+|+||||||||++.|++++ |..|.|.+++.. ..
T Consensus 4 ~~~l~~~~l~~~~~----~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 4 QPLLSVRGLTKLYG----PRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred CceEEEeeeEEEcC----CceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc
Confidence 34778888877762 2468999999999999 99999999999999999999998 789999999864 21
Q ss_pred -----------ccccccccCCCC--CCchhhHHHHHHh-------------------hhccccccccccccccccccccc
Q 006094 105 -----------SRIIDGNFDDPR--LTDYDTLLENIRG-------------------LKEGKAVQVPIYDFKSSSRIGYR 152 (661)
Q Consensus 105 -----------~~~i~~~fq~p~--~~d~~tl~enL~~-------------------L~~g~~I~~P~yd~~~~~r~~~~ 152 (661)
...+++++|++. .+...++.+++.. +...-.+..+..+......++++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 123678888874 2332333333321 00000111012233334455566
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-++.++.++.+++.||+...+|.
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~ 184 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDV 184 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 6667777778888888888888888885
No 235
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2.4e-11 Score=136.78 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=107.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEecCCcccc----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS---- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p--~~g~I~lD~~~~~---- 104 (661)
.|+++.++++.| +...+++++||.+++|+ ++||+||||||||||+++|++++ | +.|.|.++|....
T Consensus 4 ~~l~~~nl~~~~----~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTF----GGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEe----CCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 478888887776 34579999999999999 99999999999999999999998 4 6999999986321
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHhhhc----cc--------c-------cccc-ccccccccccccceeeccCcc
Q 006094 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKE----GK--------A-------VQVP-IYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 ----~~~i~~~fq~p~~~d~~tl~enL~~L~~----g~--------~-------I~~P-~yd~~~~~r~~~~~~~v~~a~ 160 (661)
++.++++||++..++..++.+++..... +. . +..+ ..+...+..++++..++.-+.
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 2347899999988888888888754211 00 0 0011 122333445556677777888
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++.++.+++.||+...+|.
T Consensus 157 al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTE 176 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCH
Confidence 88889999999999998886
No 236
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.17 E-value=1e-11 Score=120.94 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=88.4
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.++...|. .....++++++|.+++|+ +++|+|+||||||||++.|+++. |..|.|.+++.... .+.
T Consensus 2 ~~~~~~~~~~--~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 2 SINNVSFSYP--EQEQQVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred EEEEEEEEeC--CCCccceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 3445555442 111358999999999999 99999999999999999999998 78999999986321 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+++++|++..++ .++.+++ ....++++..++.-++.++.++.+++.||+...+|.
T Consensus 77 i~~~~q~~~~~~-~tv~~~i-----------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL-----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred EEEEccCCeeec-ccHHHhh-----------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 778999988776 5777776 122333344455555556666666666777777775
No 237
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.17 E-value=2.6e-11 Score=135.87 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=99.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++++.| +...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++....
T Consensus 3 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~ 75 (490)
T PRK10938 3 SLQISQGTFRL----SDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL 75 (490)
T ss_pred eEEEEeEEEEc----CCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHH
Confidence 67787777766 33568999999999999 99999999999999999999998 78899988775321
Q ss_pred ccccccccCCCCC--C-c-----hhhHHHHHH----------hhhccccccccccccccccccccceeeccCccEEEEEe
Q 006094 105 SRIIDGNFDDPRL--T-D-----YDTLLENIR----------GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 ~~~i~~~fq~p~~--~-d-----~~tl~enL~----------~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.++++||++.. + . ..++.+++. .+...-.+. ...+...+..++++..++.-+..++.++
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1236778887542 1 0 234444431 111111111 1234445566667777888888889999
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 155 ~lllLDEPt~~LD~ 168 (490)
T PRK10938 155 DLLILDEPFDGLDV 168 (490)
T ss_pred CEEEEcCCcccCCH
Confidence 99999999998886
No 238
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=2.2e-11 Score=121.32 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=98.4
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------ccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRI 107 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~ 107 (661)
++.+++..| +...+++++||.+++| +++|+|+||||||||+++|++++ |..|.|.++|.... .+.
T Consensus 2 ~~~~~~~~~----~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 2 QLENLTKRY----GKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred EEEEEEEEE----CCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 344444444 3457999999999983 79999999999999999999998 78999999986421 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhc--c---c-----------cccc-cccccccccccccceeeccCccEEEEEehhhh
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~--g---~-----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
+++++|++..|+..++.+++..... + . .... +..+...+..++++..++.-+..++-++.+++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999988888888888753210 0 0 0111 11233334445556666777777888888888
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 154 lDEPt~~LD~ 163 (211)
T cd03264 154 VDEPTAGLDP 163 (211)
T ss_pred EcCCcccCCH
Confidence 8888888886
No 239
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.2e-11 Score=125.78 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=99.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~ 104 (661)
..|+++.++...|. ...++++++|.+.+|+ +++|+|+||||||||+++|++++ + ..|.|.++|....
T Consensus 18 ~~~l~~~nl~~~~~----~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 18 HSVFEVEGVKVFYG----GFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CceEEEeeEEEEeC----CeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 44888888877763 3579999999999999 99999999999999999999986 2 4799999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc------c-------ccc-----cccccccccccccceee
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK------A-------VQV-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~------~-------I~~-----P~yd~~~~~r~~~~~~~ 155 (661)
...++++||++..|+. ++.+++..... +. . +.. ...+......++++..+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 2347889999888864 77887753211 00 0 000 01122223344455566
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~ 194 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDP 194 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCH
Confidence 6666777777777777888887775
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.17 E-value=2.2e-11 Score=122.37 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=98.0
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------- 104 (661)
+++.++...|....+...+++++||.+.+|+ +++|+|+||||||||++.|++.+ |..|.|.++|....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 4556666655322123679999999999999 99999999999999999999998 78999999986421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc-cccc----------------cc-cccccccccccccceeeccCccEEEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE-GKAV----------------QV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~-g~~I----------------~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+.+++.+|++..|+..++.+++..... .... .. +..+......++++..++.-++.++-
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 2357889999988887788887753221 0000 00 11122222233344455555666666
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
+..+++.||+...+|.
T Consensus 159 ~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 159 RPKLVLADEPTAALDS 174 (220)
T ss_pred CCCEEEEeCCCCcCCH
Confidence 7777777777777775
No 241
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.8e-11 Score=124.03 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=91.1
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc----
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~---- 104 (661)
++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|+++. |..|.|.++|....
T Consensus 7 ~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 7 SVKNLNLWY----GSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EeeeEEEEE----CCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 344544444 44679999999999999 99999999999999999999986 25899999986321
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhh--ccc-----cc-----------ccc-----ccccccccccccceeec
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK-----AV-----------QVP-----IYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~-----~I-----------~~P-----~yd~~~~~r~~~~~~~v 156 (661)
.+.++++||++.+|+. ++.+++.... .+. .. ... ..+......++++..++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2347889999988875 7778775321 110 00 000 01112222334444555
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-++.++-+..+++.||+...+|.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~ 182 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDP 182 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCH
Confidence 555556666666666777777775
No 242
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.16 E-value=2.2e-11 Score=131.40 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=144.4
Q ss_pred eeeeecccceeeeccC-------ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc--
Q 006094 33 RYEIVPIEDTLSFEKG-------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g-------~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-- 103 (661)
.++..++.-.|....| .+.++++|||.+.+|+ .+||+|.|||||||+..+|.++++..|.|.++|...
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~ 352 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc
Confidence 5666666666655544 3469999999999999 999999999999999999999997779999999732
Q ss_pred --------cccccccccCCCC--CCchhhHHHHHHhhhc--c----------------cc--ccccccccccccccccce
Q 006094 104 --------SSRIIDGNFDDPR--LTDYDTLLENIRGLKE--G----------------KA--VQVPIYDFKSSSRIGYRT 153 (661)
Q Consensus 104 --------~~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g----------------~~--I~~P~yd~~~~~r~~~~~ 153 (661)
.++.+..+||+|. +-+.+++.+.+..-.. . .. ......+..+|..++++.
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 2345678999984 4677777777653111 0 01 122345666788888888
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCc
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~A 233 (661)
.+++.++.+|+++-+++.||+...+|..|--. -+.|.|.+++ +.|. +
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQ---vv~LLr~LQ~---k~~L---------------------------s 479 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQ---VLDLLRDLQQ---KHGL---------------------------S 479 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHH---HHHHHHHHHH---HhCC---------------------------e
Confidence 89999999999999999999998888641100 0112222221 1232 2
Q ss_pred eEEEECCCCCCCCCCCCeeeeccCCCccHHHHHHHHcccccc
Q 006094 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTE 275 (661)
Q Consensus 234 DIII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~l~~~ 275 (661)
-+-|.+|-...+-.++.|+++|.++.+..+...++|..+...
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHE 521 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcH
Confidence 344555555556677777888888888777787888765433
No 243
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=2.3e-11 Score=127.54 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=99.8
Q ss_pred ceeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 32 DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..+++.++.+.|....+ ...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccc
Confidence 45778888877732110 1358999999999999 99999999999999999999998 78999999886321
Q ss_pred -------ccccccccCCCC--CCchhhHHHHHHhhhc--cc--------------ccccc--ccccccccccccceeecc
Q 006094 105 -------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVP 157 (661)
Q Consensus 105 -------~~~i~~~fq~p~--~~d~~tl~enL~~L~~--g~--------------~I~~P--~yd~~~~~r~~~~~~~v~ 157 (661)
.+.+++++|++. .++ .++.+++..... +. ....+ ..+......++++..++.
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~ 160 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVA 160 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH
Confidence 124678899874 333 477777753211 10 01111 112223344555666667
Q ss_pred CccEEEEEehhhhhccccCCCCE
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDl 180 (661)
-++.++.++.+++.||+...+|.
T Consensus 161 laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccCCH
Confidence 77777788888888888888886
No 244
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3.6e-11 Score=123.10 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=97.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh---CC---CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l---lp---~~g~I~lD~~~~~- 104 (661)
.|+++.++...| +...+++++||.+.+|+ ++||+|+||||||||+++|+++ .| ..|.|.++|....
T Consensus 2 ~~l~~~~~~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWY----GDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEE----CCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 467787877766 33568999999999999 9999999999999999999986 33 3799999987421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c----cc-----------cccc-----cccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQVP-----IYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g----~~-----------I~~P-----~yd~~~~~r~~~~~~ 154 (661)
.+.+++++|++..++ .++.+++..... + .. ...+ ..+......++++..
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 124788999988886 488888753211 0 00 0000 011122233445555
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++.+..+++.||+...+|.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDP 179 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 56566666777777777888887775
No 245
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.16 E-value=4.3e-11 Score=118.26 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=93.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc---cccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRII 108 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~---~~~i 108 (661)
|+++.+++..|. ...+++ ++|.+++|+ +++|+|+||||||||+++|++.+ |..|.+.+++.... .+.+
T Consensus 1 ~l~~~~l~~~~~----~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIE----QKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEEC----CcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhE
Confidence 356677766662 234555 999999999 99999999999999999999998 78999999986432 2235
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc--cc--cc-------cc-cccccccccccccceeeccCccEEEEEehhhhhccccC
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE--GK--AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~--g~--~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (661)
++.++.+..+...++.+++..... +. .+ .. +..+......++++..++.-+..++-+..+++.||+..
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 677777766666777777753211 00 00 00 11122223334445555666666677777777778777
Q ss_pred CCCE
Q 006094 177 LIDL 180 (661)
Q Consensus 177 llDl 180 (661)
.+|.
T Consensus 153 ~LD~ 156 (195)
T PRK13541 153 NLSK 156 (195)
T ss_pred cCCH
Confidence 7775
No 246
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1.5e-11 Score=119.27 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=86.7
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...|. .....++++++|.+++|+ +++|+||||||||||+++|++++ |..|.+.+++.... .+
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 2 EFKNVSFSYP--GRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred EEEEEEEEcC--CCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 3445555442 111258999999999999 99999999999999999999998 78899999986321 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+++.||++..++ .++.+++ .++++..++.-+..++.++.+++.||+...+|.
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l--------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~ 129 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh--------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 4678899987776 4777776 222233444455556666666666777777775
No 247
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=2.3e-11 Score=127.33 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=101.0
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCc---eEEecCCcccc--
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDS-- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~---g~I~lD~~~~~-- 104 (661)
+.|+++.++...|. .....++++++|.+.+|+ ++||+|+||||||||+++|++++ |.. |.|.++|....
T Consensus 3 ~~~l~i~~l~~~~~--~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 3 DNIVEFKHVSFTYP--DSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred CceEEEEEEEEEcC--CCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 34788888877762 122458999999999999 99999999999999999999998 655 89999997432
Q ss_pred -----ccccccccCCCC-CCchhhHHHHHHhhhc--cc---c-----------ccc-cccccccccccccceeeccCccE
Q 006094 105 -----SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 -----~~~i~~~fq~p~-~~d~~tl~enL~~L~~--g~---~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~V 161 (661)
...++++||++. .++..++.+++..... +. . +.. +..+......++++..++.-+..
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 234788999985 5666788888853211 10 0 000 11222233344455566666667
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 158 l~~~P~llllDEPt~gLD~ 176 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDP 176 (282)
T ss_pred HHcCCCEEEEECCcccCCH
Confidence 7777777777888887776
No 248
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=9.6e-12 Score=121.03 Aligned_cols=80 Identities=20% Similarity=0.379 Sum_probs=66.5
Q ss_pred eccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCC
Q 006094 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR 116 (661)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~ 116 (661)
+..+...+|+++||.+.+|+ .|+|+||||||||||+++++.+. |+.|.+.+.|.... +..+.|+-|.|.
T Consensus 11 y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa 87 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87 (223)
T ss_pred hhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence 34456789999999999999 99999999999999999999998 89999999997422 245778888888
Q ss_pred CCchhhHHHHHH
Q 006094 117 LTDYDTLLENIR 128 (661)
Q Consensus 117 ~~d~~tl~enL~ 128 (661)
+|. +++.+|+-
T Consensus 88 Lfg-~tVeDNli 98 (223)
T COG4619 88 LFG-DTVEDNLI 98 (223)
T ss_pred ccc-cchhhccc
Confidence 875 56777663
No 249
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.3e-10 Score=115.69 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=112.5
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------ 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~------ 105 (661)
|+++.+++++| +...+++++|+.+++|+ +.+|+||||||||||+.+++.++ .+.|.|.+||.....
T Consensus 1 MI~i~nv~K~y----~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSY----GTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhh----CCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHH
Confidence 56788888877 77899999999999999 99999999999999999999998 689999999974211
Q ss_pred -cccccccCC------------------------CCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCcc
Q 006094 106 -RIIDGNFDD------------------------PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 106 -~~i~~~fq~------------------------p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
+.+...-|. +..-|+..+.+.+..+. ... .-++...+.++++..++--+-
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~-L~~----l~dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-LED----LSDRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc-ccc----hHHHhHHhcccchhhhhhhhe
Confidence 111111111 12223333333333221 111 123333445566666677778
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
|+.=+--|.+.||+.+.+|++ -.+.+..-++|...+-|++..-|+|.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmk------Hsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMK------HSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred eeeccCcEEEecCcccccchH------HHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 888899999999999999997 344555566666666787766666655
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.15 E-value=3.6e-11 Score=135.04 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=111.7
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEecCCcccc------
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS------ 104 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p--~~g~I~lD~~~~~------ 104 (661)
+++.++++.| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ | +.|.|.++|....
T Consensus 2 l~i~~l~~~~----~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTF----GGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEe----CCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 5666776665 34579999999999999 99999999999999999999998 4 6899999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc----c-----cc-----------cccccc--ccccccccccceeeccCcc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE----G-----KA-----------VQVPIY--DFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~----g-----~~-----------I~~P~y--d~~~~~r~~~~~~~v~~a~ 160 (661)
...++++||++..++..++.+++..... + .. ...+.+ +...+..++++..++.-+.
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 2347899999888888888888753211 0 00 001111 1223445566677777788
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
.++.++.+++.||+...+|. .....+..+.+.+.+.|.+.
T Consensus 155 al~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 194 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTE-------KETEILLDIIRDLKAHGVAC 194 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 88888888888999998887 23333344444444445443
No 251
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.15 E-value=2e-11 Score=118.06 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=89.5
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCC
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~ 114 (661)
+.++...|. +...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++. +.+++.+|+
T Consensus 3 ~~~~~~~~~---~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~ 72 (166)
T cd03223 3 LENLSLATP---DGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQR 72 (166)
T ss_pred EEEEEEEcC---CCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCC
Confidence 445544442 12468999999999999 99999999999999999999998 78899998764 457888998
Q ss_pred CCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 115 p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..+ ..++.+++... .....++++..++.-++.++.++.+++.||+...+|.
T Consensus 73 ~~~~-~~tv~~nl~~~-------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 73 PYLP-LGTLREQLIYP-------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Cccc-cccHHHHhhcc-------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 8755 45888887531 1233444455556666666677777777788777775
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.15 E-value=2.6e-11 Score=122.30 Aligned_cols=144 Identities=11% Similarity=0.021 Sum_probs=96.6
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCccc----cc
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND----SS 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~----~~ 105 (661)
+++.++...+...++...++++++|.+++|+ +++|+||||||||||++.|++.++ ..|.|.++|... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 3455665555333334679999999999999 999999999999999999999974 789999998643 23
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhc--ccc----------c---cccc------cccccccccccceeeccCccEEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GKA----------V---QVPI------YDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~----------I---~~P~------yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
+.+++++|++..|+..++.+++..... +.. + ..+. .+......++++..++.-++.++-
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 457889999999988899988863211 100 0 0000 011112233344444555555666
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 161 ~p~illlDEP~~gLD~ 176 (226)
T cd03234 161 DPKVLILDEPTSGLDS 176 (226)
T ss_pred CCCEEEEeCCCcCCCH
Confidence 6666666777777775
No 253
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.15 E-value=3.6e-11 Score=122.42 Aligned_cols=139 Identities=24% Similarity=0.257 Sum_probs=93.8
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i 108 (661)
++.++...| +...+++++||.+.+|+ ++||+|+||||||||++.|++.+ |..|.|.++|.... .+.+
T Consensus 2 ~i~~l~~~~----~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i 74 (237)
T TIGR00968 2 EIANISKRF----GSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74 (237)
T ss_pred EEEEEEEEE----CCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCE
Confidence 344555444 34579999999999999 99999999999999999999998 78999999987432 2357
Q ss_pred ccccCCCCCCchhhHHHHHHhhhccc---------cc-------cc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKEGK---------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~g~---------~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++++|++..|+..++.+++....... .+ .. +..+......++++..++.-+..++-.+.+++.
T Consensus 75 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (237)
T TIGR00968 75 GFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154 (237)
T ss_pred EEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88999998888778888875322100 00 00 111122222333444445455555555666666
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 155 DEP~~~LD~ 163 (237)
T TIGR00968 155 DEPFGALDA 163 (237)
T ss_pred cCCcccCCH
Confidence 777777775
No 254
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.8e-11 Score=124.78 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=102.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~ 104 (661)
..++++.++...| +...+++++||.+++|+ +++|+|+||||||||++.|++++ |..|.|.++|....
T Consensus 11 ~~~l~i~nl~~~~----~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 11 NIIISLQNVTISY----GTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CceEEEEeEEEEE----CCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3478888887776 33568999999999999 99999999999999999999986 37899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--c--cc----c-------cc-----cccccccccccccceee
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--KA----V-------QV-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g--~~----I-------~~-----P~yd~~~~~r~~~~~~~ 155 (661)
.+.++++||++.+|+ .++.+++..... + .. + .. ...+...+..++++..+
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 134788999998887 488888863211 1 00 0 00 00122223344455666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-+..++.++.+++.||+...+|.
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDP 187 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCH
Confidence 6777778888888888888888876
No 255
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.15 E-value=5.1e-11 Score=119.73 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=107.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc-----c-------ccccccccC-CCCCCchhhHHHHH----H
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----S-------SRIIDGNFD-DPRLTDYDTLLENI----R 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-----~-------~~~i~~~fq-~p~~~d~~tl~enL----~ 128 (661)
+.+|||+|..||||||+++.+... +..++++|..-. . ....+..+- ....++...+.+.+ .
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~--G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL--GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc--CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 579999999999999999999993 567999998621 0 011222221 12234444444433 1
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
.+..-+.+.+|....... .. ......+++++|-+++++......||..|.|++|.++|+.|-++|+ +.+.+
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~----~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e 150 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VV----IDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEE 150 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HH----HHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHH
Confidence 222234566665433322 11 1111223899999999987777779999999999999888777776 67877
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
.+..+.. ..+|..++ ...||+|+.|++++.
T Consensus 151 ~~~~~~~-~Q~~~~ek-----~~~ad~vi~n~~~i~ 180 (201)
T COG0237 151 DAEARLA-SQRDLEEK-----LALADVVIDNDGSIE 180 (201)
T ss_pred HHHHHHH-hcCCHHHH-----HhhcCChhhcCCCHH
Confidence 7777764 33454444 589999999998664
No 256
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=2.6e-11 Score=127.60 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=103.5
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP 115 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq~p 115 (661)
|....++++||.++.|+ |..|.|-||||||||.++|.++. |+.|.|.+||.... ++.++++||++
T Consensus 39 g~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 45677999999999999 99999999999999999999998 99999999997421 24578999999
Q ss_pred CCCchhhHHHHHHhhhccc----------------ccccccc-ccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 116 RLTDYDTLLENIRGLKEGK----------------AVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 116 ~~~d~~tl~enL~~L~~g~----------------~I~~P~y-d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
.++|+.++.+|+..-.+-. .+-...| ++.+++.+++.++++.-++.+..++..++-||.+..+
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSAL 195 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL 195 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhc
Confidence 9999999999987432211 1112222 4456677777778888888888888888888888888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 196 DP 197 (386)
T COG4175 196 DP 197 (386)
T ss_pred Ch
Confidence 86
No 257
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.14 E-value=4e-11 Score=120.77 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=96.7
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc----
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---- 104 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~---- 104 (661)
++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 2 ~~~~l~~~~----~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 2 ELRDLNVYY----GDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred EEEEEEEEc----CCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 344554444 34579999999999999 99999999999999999999997 47899999986421
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhhc--cc--------c-------cccc-ccccc--cccccccceeeccCc
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------A-------VQVP-IYDFK--SSSRIGYRTLEVPSS 159 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------~-------I~~P-~yd~~--~~~r~~~~~~~v~~a 159 (661)
.+.++++||++..+ ..++.+++..... +. . .... ..+.. ....++++..++.-+
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 23478899998888 6788888753211 10 0 0001 11111 134445556666677
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
..++.++.+++.||+...+|.
T Consensus 154 ~al~~~p~llllDEPt~~LD~ 174 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDP 174 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCH
Confidence 777888888888888888876
No 258
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=4e-11 Score=135.03 Aligned_cols=166 Identities=11% Similarity=0.086 Sum_probs=114.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEecCCcccc----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS---- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-~~g~I~lD~~~~~---- 104 (661)
..++++.++++.|... +...+++++||.+++|+ ++||+|+||||||||+++|++++ | +.|.|.+++....
T Consensus 257 ~~~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 257 EVILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred CceEEEecCccccccc-cccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH
Confidence 3478888888776321 23468999999999999 99999999999999999999998 3 7999999985321
Q ss_pred ----ccccccccCCC---CCCchhhHHHHHHhh-----hc-c--c------c-------cccc--cccccccccccccee
Q 006094 105 ----SRIIDGNFDDP---RLTDYDTLLENIRGL-----KE-G--K------A-------VQVP--IYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 ----~~~i~~~fq~p---~~~d~~tl~enL~~L-----~~-g--~------~-------I~~P--~yd~~~~~r~~~~~~ 154 (661)
...+++++|++ ..++..++.+++... .. + . . .... ..+...+..++++..
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 23478889985 366667777777421 00 0 0 0 1111 123333455666777
Q ss_pred eccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
++.-+..++.++.+++.||+...+|.. ..+.+.++.++..+.|.+.
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~-------~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVG-------AKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHh-------HHHHHHHHHHHHHHCCCEE
Confidence 788888888899999999999999973 3334444555554445543
No 259
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.14 E-value=1.8e-11 Score=138.20 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=113.3
Q ss_pred CCCCCcccccccchhhhccc---------CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcH
Q 006094 9 ADSPRRRPGLLRDQVQLVKK---------KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGK 79 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~---------~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGK 79 (661)
.++.+|+..+++...+.... .....+++.+++..|.. ...+|+++||.+++|+ .++|+|||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~---~~~vL~~isl~i~~G~---~vaIvG~SGsGK 374 (529)
T TIGR02868 301 RAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG---SPPVLDGVSLDLPPGE---RVAILGPSGSGK 374 (529)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC---CCceeecceEEEcCCC---EEEEECCCCCCH
Confidence 45667777777654432110 00123556666555521 1358999999999999 999999999999
Q ss_pred HHHHHHHHHhC-CCceEEecCCcccc------ccccccccCCCCCCchhhHHHHHHhhhcc----------------ccc
Q 006094 80 TVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAV 136 (661)
Q Consensus 80 STLak~La~ll-p~~g~I~lD~~~~~------~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I 136 (661)
|||++.|.+++ |+.|.|.+||.... ++.+++++|+|.+|+ .++++|+...... +.+
T Consensus 375 STLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i 453 (529)
T TIGR02868 375 STLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWL 453 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHH
Confidence 99999999998 89999999996321 245789999999987 5888888642110 011
Q ss_pred c-cc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 Q-VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~-~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
. .| .||-..+ ..++++.++++-++.++-++..++.||+...+|.
T Consensus 454 ~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 454 RSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 503 (529)
T ss_pred HhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1 12 1232222 2455677778888888888888888888877775
No 260
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.2e-11 Score=124.23 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=100.9
Q ss_pred cCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCc
Q 006094 28 KKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNY 101 (661)
Q Consensus 28 ~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~ 101 (661)
+....++++.++...| +...++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.+||.
T Consensus 15 ~~~~~~l~~~nl~~~~----~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 15 PEEEIALSTKDLHVYY----GKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred CCCCeEEEEeeEEEEE----CCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 3345578888887766 34679999999999999 99999999999999999999997 2 6899999986
Q ss_pred ccc---------ccccccccCCCCCCchhhHHHHHHhhh-c-cc----cccc----------------cccccccccccc
Q 006094 102 NDS---------SRIIDGNFDDPRLTDYDTLLENIRGLK-E-GK----AVQV----------------PIYDFKSSSRIG 150 (661)
Q Consensus 102 ~~~---------~~~i~~~fq~p~~~d~~tl~enL~~L~-~-g~----~I~~----------------P~yd~~~~~r~~ 150 (661)
... .+.++++||++..|+ .++.+++.... . +. .... ...+...+..++
T Consensus 88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 166 (267)
T PRK14237 88 DINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSG 166 (267)
T ss_pred EcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCH
Confidence 431 234788999988887 58888886421 1 10 0000 011222233344
Q ss_pred cceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++..++.-++.++..+.+++.||+...+|.
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 455555566666667777777777777775
No 261
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.14 E-value=3e-11 Score=122.46 Aligned_cols=140 Identities=17% Similarity=0.255 Sum_probs=96.6
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...|. .+...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 2 TFEHVRFRYK--PDGPVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred EEEEEEEecC--CCCccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 3455555542 223468999999999999 99999999999999999999998 78999999986321 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhcccc---cc--------------cc-----ccccccccccccceeeccCccEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ--------------VP-----IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~~---I~--------------~P-----~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+++.+|++..++ .++.+++.....+.. +. .| ..+...+..++++..++.-++.++.
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 4788999987775 588888753211100 00 00 0112223444555566666677777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 156 ~p~llllDEP~~~LD~ 171 (237)
T cd03252 156 NPRILIFDEATSALDY 171 (237)
T ss_pred CCCEEEEeCCcccCCH
Confidence 7777778888888876
No 262
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.14 E-value=3.7e-11 Score=120.94 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=100.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.++...|... +...++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 9 ~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-PDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCC-CCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 4678888888877421 12458999999999999 99999999999999999999998 78999999986321
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhcccc-------------------c--cc-cccccccccccccceeeccCcc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-------------------V--QV-PIYDFKSSSRIGYRTLEVPSSR 160 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~-------------------I--~~-P~yd~~~~~r~~~~~~~v~~a~ 160 (661)
.+.+++++|++..|+ .++.+++........ . .. +..+......++++..++.-++
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 234788999987775 477887752111000 0 00 0112222333444555566666
Q ss_pred EEEEEehhhhhccccCCCCE
Q 006094 161 IVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (661)
.++-.+.+++.||+...+|.
T Consensus 164 al~~~p~llllDEPt~~LD~ 183 (226)
T cd03248 164 ALIRNPQVLILDEATSALDA 183 (226)
T ss_pred HHhcCCCEEEEeCCcccCCH
Confidence 67777777777888877776
No 263
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=8.5e-11 Score=122.28 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=97.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~ 104 (661)
..++++.++...|. ...++++++|.+++|+ ++||+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 23 ~~~l~~~nl~~~~~----~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 23 QTALEVRNLNLFYG----DKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CcEEEEEEEEEEEC----CeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 34778888877762 3468999999999999 999999999999999999999973 6899999986421
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhh--ccc---c-----cc-------cc-----ccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK---A-----VQ-------VP-----IYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~---~-----I~-------~P-----~yd~~~~~r~~~~~ 153 (661)
+..+++.+|++.+|+. ++.+++.... .+. . +. .. ..+......++++.
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 2347889999888875 8888885321 110 0 00 00 01112222334455
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++-+..+++.||+...+|.
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDP 201 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 555555566666666666777777775
No 264
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.14 E-value=8.7e-12 Score=149.35 Aligned_cols=174 Identities=19% Similarity=0.214 Sum_probs=132.2
Q ss_pred CcccCCCCCCCCcccccccchhhhcccCCCc--------eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEEC
Q 006094 2 AQDTSSGADSPRRRPGLLRDQVQLVKKKDSD--------RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAG 73 (661)
Q Consensus 2 ~~~~~~~~~s~~r~~~ll~~~~~l~~~~~~~--------~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~G 73 (661)
+-|.+++-.++.+++.+++.++++.....+. -+++.++...|. .+-...+++++||.+++|+ .++|+|
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YP-sRP~~~Il~~l~l~i~~Gq---TvALVG 1023 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQ---TVALVG 1023 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCC-CCCCchhhcCCcEEecCCC---EEEEEC
Confidence 3455677788899999999998776543111 367778877775 4445789999999999999 999999
Q ss_pred CCCCcHHHHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc------------
Q 006094 74 PSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG------------ 133 (661)
Q Consensus 74 pSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g------------ 133 (661)
||||||||+..+|.+.+ |..|.|.+||++. .++.++.+-|+|.+|+ .+.+||+..-...
T Consensus 1024 ~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ 1102 (1228)
T KOG0055|consen 1024 PSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKL 1102 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHH
Confidence 99999999999999998 9999999999843 2456889999999997 5788887643111
Q ss_pred -c---c-cccc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 134 -K---A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 134 -~---~-I~~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+ . ...| -||-..+. .++++.++++.++.++=++..++.||-...+|-
T Consensus 1103 ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1103 ANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred hhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 0 0 1123 25555443 456788888888888888888888887777775
No 265
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.13 E-value=5.4e-11 Score=121.66 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEecCCcccc---
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l--l-p~~g~I~lD~~~~~--- 104 (661)
..++++.++...|. ...++++++|.+.+|+ ++||+|+||||||||+++|+++ + |..|.|.+++....
T Consensus 5 ~~~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 5 KPILEIKNLHASVN----ENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77 (252)
T ss_pred CceEEEEeEEEEeC----CEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC
Confidence 34788888877662 3569999999999999 9999999999999999999997 3 68899999986321
Q ss_pred ---cc--ccccccCCCCCCchhhHHHHHHhhhcc-----------------------cccccc--ccccccc-cccccce
Q 006094 105 ---SR--IIDGNFDDPRLTDYDTLLENIRGLKEG-----------------------KAVQVP--IYDFKSS-SRIGYRT 153 (661)
Q Consensus 105 ---~~--~i~~~fq~p~~~d~~tl~enL~~L~~g-----------------------~~I~~P--~yd~~~~-~r~~~~~ 153 (661)
.. .+++.+|++..++..++.+++...... ..+..+ ..+...+ ..++++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 11 245678888777766666665321100 000011 1122222 2445556
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-+..++.++.+++.||+...+|.
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~ 184 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDI 184 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 666667777788888888888888886
No 266
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.13 E-value=3.3e-11 Score=137.42 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=104.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.|+++.++++.|. +...+++++||.+++|+ ++||+||||||||||+++|++.+ |+.|.|.+++. ..+++
T Consensus 5 ~~l~i~~l~~~y~---~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~----~~i~~ 74 (556)
T PRK11819 5 YIYTMNRVSKVVP---PKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG----IKVGY 74 (556)
T ss_pred EEEEEeeEEEEeC---CCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEE
Confidence 4788888877762 13579999999999999 99999999999999999999998 78899988642 35789
Q ss_pred ccCCCCCCchhhHHHHHHhhhc----------------ccc------------------------------------ccc
Q 006094 111 NFDDPRLTDYDTLLENIRGLKE----------------GKA------------------------------------VQV 138 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~~----------------g~~------------------------------------I~~ 138 (661)
++|++..++..++.+++..... +.. ...
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999988888888888753100 000 000
Q ss_pred cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..+...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 155 ~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~ 196 (556)
T PRK11819 155 PPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196 (556)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCCh
Confidence 112333344556666777778888888888888999988886
No 267
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=4.3e-11 Score=121.23 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=97.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----cc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~ 106 (661)
|+++.+++..|. .. ..++||.+.+|+ ++||+|+||||||||++.|++++ |..|.|.+++.... ..
T Consensus 1 ~l~~~~l~~~~~----~~--~~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYH----HL--PMRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEEC----Cc--cceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhc
Confidence 456777777763 12 238999999999 99999999999999999999998 78999999987421 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhh-cc---c------------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLK-EG---K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~-~g---~------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++..++..++.+++.... .+ . .+.. +..+...+..++++..++.-++.++-++.++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5788999998888888888885321 11 0 0000 1122233334445555566666677777777
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 152 lLDEP~~gLD~ 162 (232)
T PRK10771 152 LLDEPFSALDP 162 (232)
T ss_pred EEeCCcccCCH
Confidence 77888877776
No 268
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=1.2e-11 Score=148.31 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=137.8
Q ss_pred CCCCCCCcccccccchhhhcccCC--------CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCc
Q 006094 7 SGADSPRRRPGLLRDQVQLVKKKD--------SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAG 78 (661)
Q Consensus 7 ~~~~s~~r~~~ll~~~~~l~~~~~--------~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSG 78 (661)
+|.+++.+++..++.-+.+..... ...++..++..+|.-.. ...+|+++||.+++|+ .|+|+|+||||
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~---~valVG~SGsG 391 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQ---TVALVGPSGSG 391 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCC-cchhhCCeEEEeCCCC---EEEEECCCCCC
Confidence 566777788888877666655431 12467888888774433 5679999999999999 99999999999
Q ss_pred HHHHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc----------------
Q 006094 79 KTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK---------------- 134 (661)
Q Consensus 79 KSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---------------- 134 (661)
|||+.+.|.+++ |..|.|.+||.+. .+..++.++|+|-+|+ .++.||+...+.+.
T Consensus 392 KST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~ 470 (1228)
T KOG0055|consen 392 KSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHD 470 (1228)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHH
Confidence 999999999998 9999999999743 2346899999997775 67888886443220
Q ss_pred c-cccc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 135 A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 135 ~-I~~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
. ...| .|+-..+. .++++.++++.++.++-++..++.||....+|. ...+......+. ...|+|.-
T Consensus 471 fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~-------~se~~Vq~ALd~-~~~grTTi 542 (1228)
T KOG0055|consen 471 FILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA-------ESERVVQEALDK-ASKGRTTI 542 (1228)
T ss_pred HHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCH-------HHHHHHHHHHHH-hhcCCeEE
Confidence 0 0112 13333322 456788888999999999999999999988886 233332222222 22466655
Q ss_pred HHHHHH
Q 006094 209 EIIHQI 214 (661)
Q Consensus 209 eVi~q~ 214 (661)
-|.|+.
T Consensus 543 vVaHRL 548 (1228)
T KOG0055|consen 543 VVAHRL 548 (1228)
T ss_pred EEeeeh
Confidence 555555
No 269
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=4.2e-11 Score=121.02 Aligned_cols=140 Identities=21% Similarity=0.227 Sum_probs=95.2
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...|. .....++++++|.+.+|+ ++||+|+||||||||++.|++++ |..|.|.++|.... .+
T Consensus 2 ~~~~l~~~~~--~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 2 EFKNVTFRYP--GDGPPVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred EEEEEEEEeC--CCCccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 3455555552 122368999999999999 99999999999999999999998 78999999986321 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccc---cc-------cc-------c-----ccccccccccccceeeccCccEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I-------~~-------P-----~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+++.+|++..++ .++.+++....... .+ .. | ..+......++++..++.-+..++.
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 4788999988876 58888875321110 00 00 0 0111222334445555666666777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 156 ~p~lllLDEP~~~LD~ 171 (234)
T cd03251 156 DPPILILDEATSALDT 171 (234)
T ss_pred CCCEEEEeCccccCCH
Confidence 7777777888877776
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.13 E-value=5.4e-11 Score=134.07 Aligned_cols=140 Identities=12% Similarity=0.107 Sum_probs=102.8
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++++.+ + .+++++||.+.+|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 264 ~~l~~~~l~~~~----~--~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRD----R--KKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccC----C--CcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHH
Confidence 478888887643 2 37999999999999 99999999999999999999998 78999999985321
Q ss_pred --ccccccccCCC---CCCchhhHHHHHHhhhc----------c---c------------ccccc--ccccccccccccc
Q 006094 105 --SRIIDGNFDDP---RLTDYDTLLENIRGLKE----------G---K------------AVQVP--IYDFKSSSRIGYR 152 (661)
Q Consensus 105 --~~~i~~~fq~p---~~~d~~tl~enL~~L~~----------g---~------------~I~~P--~yd~~~~~r~~~~ 152 (661)
.+.++++||++ ..++..++.+++..... + . .+..+ ..+...+..++++
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 13478899873 56777788887642100 0 0 01111 1233334456667
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-++.++.+..+++.||+...+|.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~ 442 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDV 442 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCH
Confidence 7777788888888888899999999997
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.13 E-value=4.4e-11 Score=134.15 Aligned_cols=130 Identities=9% Similarity=0.064 Sum_probs=97.3
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------ccccccccCCCCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPRLT 118 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~~~i~~~fq~p~~~ 118 (661)
+...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.+++++|++..+
T Consensus 9 ~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 9 PGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred CCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 44679999999999999 99999999999999999999998 88999999986321 23478899998888
Q ss_pred chhhHHHHHHhhhc---cc---------c-------cccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 119 DYDTLLENIRGLKE---GK---------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 119 d~~tl~enL~~L~~---g~---------~-------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
+..++.+++..... +. . .... ..+...+..++++..++.-+..++.++.+++.||+...+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~L 165 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 88888888753210 10 0 0000 112233445556667777777888888888889999888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 166 D~ 167 (491)
T PRK10982 166 TE 167 (491)
T ss_pred CH
Confidence 86
No 272
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=4.4e-11 Score=119.21 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=95.9
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~~i 108 (661)
++.++...|. ... .++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++... ..+.+
T Consensus 2 ~~~~l~~~~~----~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 2 RLDKIRFSYG----EQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred EEEeEEEEeC----CEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 3455555552 222 29999999999 99999999999999999999998 7899999998642 12357
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc-c-c-------cc-------cc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE-G-K-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~-g-~-------~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++.+|++..|+..++.+++..... . . .+ .. +..+......++++..++.-++.++-++.+++.
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll 152 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999998888899998863211 0 0 00 00 111222233444555666666777777777777
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 153 DEP~~~LD~ 161 (211)
T cd03298 153 DEPFAALDP 161 (211)
T ss_pred cCCcccCCH
Confidence 888888886
No 273
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=3.6e-11 Score=136.15 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=99.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~ 111 (661)
|+++.+++..| +...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++. ..++++
T Consensus 1 ml~i~~ls~~~----~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~ 69 (530)
T PRK15064 1 MLSTANITMQF----GAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKL 69 (530)
T ss_pred CEEEEEEEEEe----CCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEE
Confidence 46677776665 34579999999999999 99999999999999999999998 78899998863 246788
Q ss_pred cCCCCCCchhhHHHHHHhhhc-------------c-----------------------------------ccccccc--c
Q 006094 112 FDDPRLTDYDTLLENIRGLKE-------------G-----------------------------------KAVQVPI--Y 141 (661)
Q Consensus 112 fq~p~~~d~~tl~enL~~L~~-------------g-----------------------------------~~I~~P~--y 141 (661)
+|++..++..++.+++..... + ..+..+. .
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 149 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH 149 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh
Confidence 888877776666666542100 0 0000111 0
Q ss_pred ccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 142 d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~ 188 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 122344555666777778888888888888999988886
No 274
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4.8e-11 Score=119.29 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=90.4
Q ss_pred ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccC
Q 006094 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFD 113 (661)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq 113 (661)
.++.+.+ +++|.+++ + +++|+|+||||||||++.|++.+ |..|.|.++|.... .+.+++++|
T Consensus 9 ~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred ecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 3344544 99999999 9 99999999999999999999998 78999999886321 234788999
Q ss_pred CCCCCchhhHHHHHHhhhcc-------cc-------cccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCC
Q 006094 114 DPRLTDYDTLLENIRGLKEG-------KA-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (661)
Q Consensus 114 ~p~~~d~~tl~enL~~L~~g-------~~-------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (661)
++..++..++.+++...... .. +..+ ..+......++++..++.-+..++.++.+++.||+...+
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99888877888887532110 00 0011 112222334445556666667777777777778888888
Q ss_pred CE
Q 006094 179 DL 180 (661)
Q Consensus 179 Dl 180 (661)
|.
T Consensus 163 D~ 164 (214)
T cd03297 163 DR 164 (214)
T ss_pred CH
Confidence 85
No 275
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.12 E-value=4.3e-11 Score=121.39 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=95.0
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------cc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~ 106 (661)
++.++...|... +...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+
T Consensus 2 ~i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 2 EFKNVSFRYPSR-PDVPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred eEEEEEEecCCC-CCccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 345555555211 12468999999999999 99999999999999999999998 78999999985321 23
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccc---cc---------c-----cc-----ccccccccccccceeeccCccEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---AV---------Q-----VP-----IYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I---------~-----~P-----~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
.+++.+|++..++ .++.+++....... .+ . .| ..+...+..++++..++.-+..++.
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 4788899887776 58888875321100 00 0 00 0111122334445555666666777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 157 ~p~llllDEP~~gLD~ 172 (238)
T cd03249 157 NPKILLLDEATSALDA 172 (238)
T ss_pred CCCEEEEeCccccCCH
Confidence 7777777888887776
No 276
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=5.5e-11 Score=121.71 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=98.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~- 104 (661)
.++++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++.++ ..|.|.++|....
T Consensus 3 ~~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 3 NIISAKDVHLSY----GNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred ceEEEEeeEEEE----CCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 467777777766 34579999999999999 999999999999999999999973 6899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c----c----cc-------cc-----ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----AV-------QV-----PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g----~----~I-------~~-----P~yd~~~~~r~~~~~~ 154 (661)
.+.+++++|++..|+ .++.+++..... + . .+ .. ...+......++++..
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 234778999988886 588888753211 0 0 00 00 0012222334445555
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++.++.+++.||+...+|.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDP 180 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCH
Confidence 56666667777777777888877775
No 277
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.11 E-value=2.5e-11 Score=133.87 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=81.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
..+++.++.+.| +.+.+.++|||.+.+|+ |.+|.|.||||||||+++|.+.+ |+.|.|.+||....
T Consensus 3 ~~l~~~~itK~f----~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRF----PGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEc----CCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHH
Confidence 467889999988 47899999999999999 99999999999999999999999 99999999998421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHh
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
+..++++|||+.+++..++.||+.-
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiL 102 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIIL 102 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhh
Confidence 2358999999999999999999853
No 278
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.11 E-value=1.1e-10 Score=118.30 Aligned_cols=169 Identities=22% Similarity=0.253 Sum_probs=122.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC------------CceEEecCCccccccccc---------cccCCCCCCchhhHHH
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMP------------SIAVITMDNYNDSSRIID---------GNFDDPRLTDYDTLLE 125 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp------------~~g~I~lD~~~~~~~~i~---------~~fq~p~~~d~~tl~e 125 (661)
.++|++|+.|+||||++..+....| -+-++.||||+..++... ..-..|-.||...+.+
T Consensus 120 ~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred heeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHH
Confidence 4999999999999999999988543 124588999975443221 1112355688888888
Q ss_pred HHHhhh--ccccccccccccccccccccceeeccCccEEEEEehhhhhc-----cccCCCCEEEEEEcCchhHHHHHHHH
Q 006094 126 NIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFR 198 (661)
Q Consensus 126 nL~~L~--~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~diRLiRRI~R 198 (661)
.+..++ .-..+..|.||+..+..+.....-....++||+||.|++.+ ++.+++|.++|++.+.+....|.-.|
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~R 279 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKR 279 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHH
Confidence 888777 45678899999999999876655556789999999999974 47789999999999998877666555
Q ss_pred HHHhhC--CCHHHHHHHHHhhcccchhhccCCCCCCceEEE
Q 006094 199 DIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (661)
Q Consensus 199 Di~eRG--~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII 237 (661)
-+. .| .++++...++....++. -++|+..+-.+|+||
T Consensus 280 Hl~-sGl~~t~~ea~er~d~ND~~N-~~~I~k~~i~~D~iv 318 (323)
T KOG2702|consen 280 HLQ-SGLVTTIAEARERFDSNDLLN-GRDIDKHLIKVDNIV 318 (323)
T ss_pred hhc-ccccCCHHHHHhhcccccccc-hHHHHhcccchHHHH
Confidence 544 57 67788777775555544 234444444445443
No 279
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.11 E-value=7.2e-11 Score=122.68 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=98.6
Q ss_pred eeeeecccceeeec-----cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFE-----KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~-----~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-- 104 (661)
|+++.++.+.|... .+...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 57788887776320 013579999999999999 99999999999999999999998 78999999987321
Q ss_pred --------ccccccccCCCC--CCchhhHHHHHHhh-hc--c--c------------cccc--cccccccccccccceee
Q 006094 105 --------SRIIDGNFDDPR--LTDYDTLLENIRGL-KE--G--K------------AVQV--PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 --------~~~i~~~fq~p~--~~d~~tl~enL~~L-~~--g--~------------~I~~--P~yd~~~~~r~~~~~~~ 155 (661)
.+.++++||++. .++..++.+++... .. + . .... ...+......++++..+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHH
Confidence 235788898873 33444555554210 00 0 0 0011 11223333445556666
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCH
Confidence 7777777778888888888887775
No 280
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.11 E-value=5.8e-11 Score=121.66 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=95.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc-----cc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~-----~~-- 104 (661)
++++.+++..| +...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.. ..
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 3 LLQVSGLSKSY----GGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred eEEEeeeEEEe----CCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 67777877766 23468999999999999 99999999999999999999998 789999998753 11
Q ss_pred ---------ccccccccCCCCC--CchhhHHHHHHh----hh---------------cccccccccccccccccccccee
Q 006094 105 ---------SRIIDGNFDDPRL--TDYDTLLENIRG----LK---------------EGKAVQVPIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~--~d~~tl~enL~~----L~---------------~g~~I~~P~yd~~~~~r~~~~~~ 154 (661)
.+.+++.+|++.. +...++.+++.. .. ..-.+.....+......++++..
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 1236788888642 222233333321 00 00001001123333344555666
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++..++.++-++.+++.||+...+|.
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~ 181 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDV 181 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 77777778888888888888888886
No 281
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.11 E-value=3.4e-11 Score=119.80 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=98.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
..+++.++...|.. ....++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++...
T Consensus 5 ~~l~~~~l~~~~~~--~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAP--DLPPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCC--CCcccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH
Confidence 45677777776631 12368999999999999 99999999999999999999998 7899999998632
Q ss_pred cccccccccCCCCCCchhhHHHHHHhhhcccccc-ccc--cccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 104 SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 104 ~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~-~P~--yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
....+++++|++..++ .++.+++.....-.... ... .+......++++..++.-++.++.++.+++.||+...+|.
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 1235789999998876 48888885321100000 000 1222233344455556666666666777777777777775
No 282
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1e-10 Score=122.20 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=101.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~ 104 (661)
..++++.+++..|. ...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.+++....
T Consensus 19 ~~~l~i~nl~~~~~----~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFA----GKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEEC----CEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 34778888877763 4578999999999999 99999999999999999999997 4 5899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c--c--c-----------cccc-----cccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--K--A-----------VQVP-----IYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g--~--~-----------I~~P-----~yd~~~~~r~~~~~~ 154 (661)
...++|++|++.+|+ .++.+++..... . . . .... .++......++++..
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHH
Confidence 234789999998887 688888753211 0 0 0 0000 011222334445556
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++.++.+++.||+...+|.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~ 196 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDP 196 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 66666777777777777888887775
No 283
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=7.6e-11 Score=123.78 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=100.6
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~ 104 (661)
..++++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 37 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 37 KPHVVAKNFSIYY----GEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred ceEEEEeeeEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4467777777666 33568999999999999 99999999999999999999974 3 8899999986321
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--cc----ccc----------------ccccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ----------------VPIYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~----~I~----------------~P~yd~~~~~r~~~~~ 153 (661)
+..+++++|++..|+. ++.+++..... +. ... ....+...+..++++.
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 2357899999988874 88888763211 00 000 0011222333445566
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~ 215 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDP 215 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 666667777777888888888887775
No 284
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=9.7e-11 Score=123.01 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=100.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~- 104 (661)
.++++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 38 ~~l~i~~l~~~~----~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 38 TVIEARDLNVFY----GDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred ceEEEEEEEEEE----CCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 367777776665 33569999999999999 99999999999999999999997 36899999986421
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--ccc-------------ccc-----cccccccccccccceeec
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA-------------VQV-----PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~-------------I~~-----P~yd~~~~~r~~~~~~~v 156 (661)
.+.+++++|++.+|+. ++.+++..... +.. ... ...+...+..++++..++
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH
Confidence 2347889999888874 78888753211 100 000 011222334455566667
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-++.++.++.+++.||+...+|.
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~ 213 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDP 213 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCH
Confidence 777777777888888888888886
No 285
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.10 E-value=2.6e-11 Score=141.19 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=112.9
Q ss_pred CCCCcccccccchhhhcccC-----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKK-----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~-----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
.+.+|+..++....+..... ....+++.+++..|+ .+...+++++||.+++|+ .++|+|+||||||||++
T Consensus 423 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlk 497 (686)
T TIGR03797 423 PLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYR--PDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLR 497 (686)
T ss_pred HHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcC--CCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHH
Confidence 34556666665433322111 112466666665553 223568999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhc-------------c--ccc-ccc-
Q 006094 85 KVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKE-------------G--KAV-QVP- 139 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~-------------g--~~I-~~P- 139 (661)
.|++++ |..|.|.+||.... ++.+++++|++.+|+ .++.+|+..... + ..+ ..|
T Consensus 498 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~ 576 (686)
T TIGR03797 498 LLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPM 576 (686)
T ss_pred HHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999998 89999999997422 346899999999986 588888853211 0 001 112
Q ss_pred cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 140 IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 140 ~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.|+-.. ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 577 G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 577 GMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 122211 22455677777778888888888888888888875
No 286
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.10 E-value=8.4e-11 Score=117.62 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=95.2
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccccc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRII 108 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~~i 108 (661)
++.+++..|. .++.++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++... ..+.+
T Consensus 2 ~~~~l~~~~~------~~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i 72 (213)
T TIGR01277 2 ALDKVRYEYE------HLPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV 72 (213)
T ss_pred eEEeeeEEeC------CcceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccce
Confidence 3455555552 13579999999999 99999999999999999999998 7899999998642 12457
Q ss_pred ccccCCCCCCchhhHHHHHHhh-hcc-c-------cc-------cc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 109 DGNFDDPRLTDYDTLLENIRGL-KEG-K-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L-~~g-~-------~I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++++|++..|+..++.+++... ... . .+ .. ...+...+..++++..++.-+..++.++.+++.
T Consensus 73 ~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 152 (213)
T TIGR01277 73 SMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLL 152 (213)
T ss_pred EEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999999998888888888532 110 0 00 00 111222233444555556666666777777777
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 153 DEPt~~LD~ 161 (213)
T TIGR01277 153 DEPFSALDP 161 (213)
T ss_pred cCCCccCCH
Confidence 888887776
No 287
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=4.2e-11 Score=120.66 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=97.7
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------c
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~ 105 (661)
+++.++...|. +...++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .
T Consensus 3 l~~~~l~~~~~---~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 3 IEFENVNFSYD---EKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred EEEEEEEEecC---CCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 45666666552 12358999999999999 99999999999999999999998 78999999986321 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccc---cc-------ccc------------ccccccccccccceeeccCccEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGK---AV-------QVP------------IYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I-------~~P------------~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
..++|.||++..++. ++.+++....... .+ ... ..+......++++..++.-+..++
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 347889999887764 8888775321110 00 000 011112334445566666777777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
-+..+++.||+...+|.
T Consensus 156 ~~p~llllDEP~~~LD~ 172 (229)
T cd03254 156 RDPKILILDEATSNIDT 172 (229)
T ss_pred cCCCEEEEeCccccCCH
Confidence 88888888888888886
No 288
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.10 E-value=5.8e-10 Score=103.56 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=92.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~ 147 (661)
+|.|+|++||||||+++.|+..+ +...++.|+....... ...-. ......+.+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~~-~~~~~---~~~~~~i~~~l~~~----------------- 58 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEVG-KLASE---VAAIPEVRKALDER----------------- 58 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHHH-HHHHH---hcccHhHHHHHHHH-----------------
Confidence 58999999999999999999986 3445666532110000 00000 00000111111110
Q ss_pred ccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCCHHHHHHHHHhhcccchhhcc
Q 006094 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFI 226 (661)
Q Consensus 148 r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s~EeVi~q~~~~v~P~~~~fI 226 (661)
...+...+.+|+||.++.. .+.+.+|+.||+++|.+++..|.+.|+... +|.+++++.+++.....+.+.+|.
T Consensus 59 -----~~~~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 59 -----QRELAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred -----HHHHhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 0001223457889987643 235678999999999999998888888442 378999999999999999999999
Q ss_pred CCCCCCc-eEEEE
Q 006094 227 EPDLQTA-HIKII 238 (661)
Q Consensus 227 eP~k~~A-DIII~ 238 (661)
.|+...+ |++|+
T Consensus 133 ~~~~~~~~dl~i~ 145 (147)
T cd02020 133 APLKLAEDAIVID 145 (147)
T ss_pred ccccCCCCcEEEe
Confidence 9987444 45553
No 289
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.10 E-value=8.4e-11 Score=121.79 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=100.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~- 104 (661)
+|+++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|+++++ +.|.|.+++....
T Consensus 9 ~~l~i~~v~~~~----~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 9 TVLRTENLNVYY----GSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred eEEEEeeeEEEE----CCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 478888887766 33578999999999999 999999999999999999999862 6899999986321
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--cc--c----cc-------c-----cccccccccccccceeec
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--A----VQ-------V-----PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--~----I~-------~-----P~yd~~~~~r~~~~~~~v 156 (661)
.+.+++++|++..|+ .++.+++..... +. . +. . ...+...+..++++..++
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 234788999988887 488888753211 00 0 00 0 011222333445556666
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-++.++.++.+++.||+...+|.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~ 184 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDP 184 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCH
Confidence 667777778878888888888886
No 290
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.10 E-value=6.5e-11 Score=120.58 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=91.9
Q ss_pred eccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------cccccccc-CCCC
Q 006094 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF-DDPR 116 (661)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------~~~i~~~f-q~p~ 116 (661)
..++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++.+ +.+.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 34466789999999999999 99999999999999999999998 88999999886321 23466777 4456
Q ss_pred CCchhhHHHHHHhhhc--cc---c-----------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCC
Q 006094 117 LTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (661)
Q Consensus 117 ~~d~~tl~enL~~L~~--g~---~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (661)
.++..++.+++..... +. . ... +..+......++++..++.-+..++.++.+++.||+...+|
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 6666677777643211 10 0 000 11122223344455556666667777777777788888887
Q ss_pred E
Q 006094 180 L 180 (661)
Q Consensus 180 l 180 (661)
.
T Consensus 186 ~ 186 (236)
T cd03267 186 V 186 (236)
T ss_pred H
Confidence 6
No 291
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.2e-10 Score=121.18 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=94.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRI 107 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----~~~ 107 (661)
++++.++...|. +...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...
T Consensus 6 ~l~~~~l~~~~~---~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWR---NGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEec---CCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 677878877763 23468999999999999 99999999999999999999998 88999999986421 124
Q ss_pred cccccCCCCCC--chhhHHHHHHh----------------------hhccccccccccccccccccccceeeccCccEEE
Q 006094 108 IDGNFDDPRLT--DYDTLLENIRG----------------------LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 108 i~~~fq~p~~~--d~~tl~enL~~----------------------L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
+++.+|++... ....+.+++.. +...-.+. +..+...+..++++..++.-++.++
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHh
Confidence 77888876431 11123333210 00000000 1122233344555566666677777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 159 ~~p~llllDEPt~~LD~ 175 (272)
T PRK15056 159 QQGQVILLDEPFTGVDV 175 (272)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 77777777888888886
No 292
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.10 E-value=5.6e-11 Score=150.75 Aligned_cols=145 Identities=13% Similarity=0.012 Sum_probs=110.2
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
+.++++.++.+.|. .+...++++++|.+++|+ ++||.|+|||||||++++|++.+ |+.|.|.++|+...
T Consensus 1935 ~~~L~v~nLsK~Y~--~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1935 TDILRLNELTKVYS--GTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred CceEEEEEEEEEEC--CCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHH
Confidence 45888999888873 223679999999999999 99999999999999999999998 89999999997432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc--cc---cc-----------cc-cccccccccccccceeeccCccEEEEEe
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---~I-----------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.+.+++.+|++.+++..++.+++..... |. .+ .. ...+...+..++++..++.-+..++-++
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2358899999999998999999864321 11 00 01 1123333445566666677777788888
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 2090 ~VLLLDEPTsGLDp 2103 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDP 2103 (2272)
T ss_pred CEEEEECCCCCCCH
Confidence 88888899888886
No 293
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=7.9e-11 Score=126.38 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=101.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~ 104 (661)
..++++.+++..|.- +...+|+++||.+.+|+ ++||+|+||||||||+++|.+.. |..|.|.+||....
T Consensus 78 ~~~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 78 ANVFEIRNFNFWYMN--RTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CceEEEEeeEEEecC--CCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 457888888877742 33568999999999999 99999999999999999999987 35899999998532
Q ss_pred ---------ccccccccCCCCCCchhhHHHHHHhhhc--c---cc------------cccc-----ccccccccccccce
Q 006094 105 ---------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA------------VQVP-----IYDFKSSSRIGYRT 153 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~~------------I~~P-----~yd~~~~~r~~~~~ 153 (661)
+..+++++|+|..|+ .++.+|+..... + .. ...+ ..+......++++.
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 235789999998886 588888863110 0 00 0000 11222223444556
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++-+..+++.|++...+|.
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDP 258 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 666666777777777777777777775
No 294
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.09 E-value=1e-10 Score=120.34 Aligned_cols=141 Identities=17% Similarity=0.248 Sum_probs=96.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C----CceEEecCCcccc--
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p----~~g~I~lD~~~~~-- 104 (661)
.++++.++...| + ..+++++||.+.+|+ +++|+|+||||||||+++|++++ | +.|.|.++|....
T Consensus 3 ~~l~~~~l~~~~----~-~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~ 74 (254)
T PRK10418 3 QQIELRNIALQA----A-QPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74 (254)
T ss_pred cEEEEeCeEEEe----c-cceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc
Confidence 467888888776 2 358999999999999 99999999999999999999998 6 7899999986421
Q ss_pred ---ccccccccCCCC-CCc-hhhHHHHHHhhh--ccc------------ccccc----ccccccccccccceeeccCccE
Q 006094 105 ---SRIIDGNFDDPR-LTD-YDTLLENIRGLK--EGK------------AVQVP----IYDFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 ---~~~i~~~fq~p~-~~d-~~tl~enL~~L~--~g~------------~I~~P----~yd~~~~~r~~~~~~~v~~a~V 161 (661)
.+.+++++|++. .|+ ..++.+++.... .+. .+..+ ..+......++++..++.-++.
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lara 154 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALA 154 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHH
Confidence 235788899875 232 234444432210 010 00111 1123334445556666777777
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 155 l~~~p~lLlLDEPt~~LD~ 173 (254)
T PRK10418 155 LLCEAPFIIADEPTTDLDV 173 (254)
T ss_pred HhcCCCEEEEeCCCcccCH
Confidence 8888888888888888885
No 295
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.09 E-value=5e-11 Score=119.40 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=96.9
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------c
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~ 105 (661)
+++.++.+.|. .+...+++++||.+++|+ +++|+||||||||||+++|++.. |..|.|.+++.... .
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYP--NQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcC--CCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 45666666652 222468999999999999 99999999999999999999998 78999999986321 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccc---cc-------cc-ccccc-----------ccccccccceeeccCccEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGK---AV-------QV-PIYDF-----------KSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I-------~~-P~yd~-----------~~~~r~~~~~~~v~~a~VVI 163 (661)
..+++.+|++..++ .++.+++....... .+ .. ...+. .....++++..++.-+..++
T Consensus 78 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~ 156 (220)
T cd03245 78 RNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL 156 (220)
T ss_pred hhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 34788999988876 58888874321000 00 00 00010 11234445556666667777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 157 ~~p~llllDEPt~~LD~ 173 (220)
T cd03245 157 NDPPILLLDEPTSAMDM 173 (220)
T ss_pred cCCCEEEEeCccccCCH
Confidence 77777777888888886
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.09 E-value=6.1e-11 Score=135.06 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=104.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.|+++.++++.|. +...+++++||.+++|+ +++|+|+||||||||+++|++.+ |+.|.|.+++ ...+++
T Consensus 3 ~~i~~~nls~~~~---~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~ 72 (552)
T TIGR03719 3 YIYTMNRVSKVVP---PKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIKVGY 72 (552)
T ss_pred EEEEEeeEEEecC---CCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEE
Confidence 3788888887773 13568999999999999 99999999999999999999998 7889988864 235789
Q ss_pred ccCCCCCCchhhHHHHHHhh-hc---------------cc--c----------------------------------ccc
Q 006094 111 NFDDPRLTDYDTLLENIRGL-KE---------------GK--A----------------------------------VQV 138 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L-~~---------------g~--~----------------------------------I~~ 138 (661)
++|++..++..++.+++... .. +. . ...
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 99999888888888887531 00 00 0 000
Q ss_pred cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..+...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 153 ~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~ 194 (552)
T TIGR03719 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194 (552)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCh
Confidence 112333344556666777777888888888888999988886
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.09 E-value=9.1e-11 Score=132.51 Aligned_cols=139 Identities=20% Similarity=0.209 Sum_probs=99.9
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCC-----------
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDN----------- 100 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~----------- 100 (661)
++.++++.| +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.+++
T Consensus 2 ~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 2 EVKNLTKKF----DGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred EEEEEEEEE----CCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 455665555 34579999999999999 99999999999999999999995 7889988762
Q ss_pred ------------cc-----------------ccccccccccCC-CCCCchhhHHHHHHhhhc--cc-------c------
Q 006094 101 ------------YN-----------------DSSRIIDGNFDD-PRLTDYDTLLENIRGLKE--GK-------A------ 135 (661)
Q Consensus 101 ------------~~-----------------~~~~~i~~~fq~-p~~~d~~tl~enL~~L~~--g~-------~------ 135 (661)
.. ..++.++++||+ +..++..++.+++..... +. .
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 10 001246888997 567777788887753111 10 0
Q ss_pred -cccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 -VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 -I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+... ..+...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 155 ~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred HcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 0111 12333455666777778888889999999999999999887
No 298
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=8.3e-11 Score=133.24 Aligned_cols=138 Identities=11% Similarity=0.127 Sum_probs=101.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.++++.| +...+++++||.+.+|+ +++|+||||||||||+++|++++ |+.|.|.+++. ..+++
T Consensus 318 ~~l~~~~l~~~~----~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~ 386 (530)
T PRK15064 318 NALEVENLTKGF----DNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGY 386 (530)
T ss_pred ceEEEEeeEEee----CCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEE
Confidence 377888887766 33568999999999999 99999999999999999999998 78999998863 35788
Q ss_pred ccCCCC--CCchhhHHHHHHhhhccc-----------cccc--cccccccccccccceeeccCccEEEEEehhhhhcccc
Q 006094 111 NFDDPR--LTDYDTLLENIRGLKEGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 111 ~fq~p~--~~d~~tl~enL~~L~~g~-----------~I~~--P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
++|++. .++..++.+++..+.... .+.. ...+......++++..++.-+..++.++.+++.||+.
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 888764 344466777765321100 0111 1223344555666777777788888888888889999
Q ss_pred CCCCE
Q 006094 176 PLIDL 180 (661)
Q Consensus 176 ~llDl 180 (661)
..+|.
T Consensus 467 ~~LD~ 471 (530)
T PRK15064 467 NHMDM 471 (530)
T ss_pred CCCCH
Confidence 88886
No 299
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.08 E-value=6.5e-11 Score=117.78 Aligned_cols=170 Identities=19% Similarity=0.310 Sum_probs=114.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccccc------ccccCCCCCCchhhHHHHHHhhhcccccc-
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII------DGNFDDPRLTDYDTLLENIRGLKEGKAVQ- 137 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i------~~~fq~p~~~d~~tl~enL~~L~~g~~I~- 137 (661)
+.++|||.|.+.|||||||+.|...+|++-.|+.|+|+.+...+ -.+|+-+.++|...+.+.++-...+....
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45799999999999999999999999988999999997654332 12456667788888888776554442111
Q ss_pred cc---cccc--ccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHH
Q 006094 138 VP---IYDF--KSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (661)
Q Consensus 138 ~P---~yd~--~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi 211 (661)
.+ ..++ -.+-.... +.......++++||.+++. +.+...+|.+|++..|.+++-.||- .+-++-+.+ .
T Consensus 83 ~ar~~~v~~~~~~~~~~~~-q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~----~Rt~y~p~~-t 156 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF-QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRRE----ARTYYPPDD-T 156 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc-CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhc----ccccCCCCC-C
Confidence 01 0111 01111111 2345667899999999997 7788999999999999887655443 223443333 2
Q ss_pred HHHHhhcccchhhccCCCCCCc--eEEEECC
Q 006094 212 HQISETVYPMYKAFIEPDLQTA--HIKIINK 240 (661)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~A--DIII~N~ 240 (661)
-++...+||.|.++.+-....+ |....|+
T Consensus 157 gyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 157 GYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred ccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 4455558999998766555444 6776653
No 300
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.08 E-value=2.4e-11 Score=142.06 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=102.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
.+++.+++..|. .....+++++||.+++|+ .|+|+|+||||||||++.|++++ |..|.|.+||... .
T Consensus 477 ~I~~~~vsf~y~--~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYS--PLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecC--CCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 466666665553 223568999999999999 99999999999999999999998 8999999999742 2
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhcc----------------cccc-cc-cccccc----ccccccceeeccCccEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAVQ-VP-IYDFKS----SSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I~-~P-~yd~~~----~~r~~~~~~~v~~a~VV 162 (661)
++.+++++|++.+|+ .++++|+...... +.+. .| .|+-.. ...++++.+++.-++.+
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence 356889999999886 5888888532110 0011 12 122221 22445666777777777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-++..++.||+...+|.
T Consensus 631 l~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 631 VRNPSILILDEATSALDP 648 (710)
T ss_pred hhCCCEEEEECccccCCH
Confidence 777777777888877775
No 301
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.08 E-value=7.1e-11 Score=116.35 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=92.9
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc-----ccccccccccCCCCCCchhhHHHHHH
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DSSRIIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~-----~~~~~i~~~fq~p~~~d~~tl~enL~ 128 (661)
..++.++.|+ +++|+||||||||||++.|+++. |..|.|.++|.. ...+.+.+.||+.++|.+.++.+|+.
T Consensus 17 ~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 4567899999 99999999999999999999998 999999999974 23456789999999999999999986
Q ss_pred hhh-cc--------ccc-------ccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 129 GLK-EG--------KAV-------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 129 ~L~-~g--------~~I-------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
--. .+ +.+ -.. ..++.+.+.++++..+++-++.++=+-+.++.||++..+|.
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 311 11 011 111 12344555667777777777777777777777777776664
No 302
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=128.34 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=123.5
Q ss_pred CCCcccccccchhhhccc----CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHH
Q 006094 11 SPRRRPGLLRDQVQLVKK----KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV 86 (661)
Q Consensus 11 s~~r~~~ll~~~~~l~~~----~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L 86 (661)
|-+|..++|++-+.--.+ .....+.+.++.. -.......++++|+|.+.+|+ .+||+||||||||||+|.|
T Consensus 308 s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~--~PPg~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 308 SYKRLNELLAELPAAAERMPLPAPQGALSVERLTA--APPGQKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred HHHHHHHHHHhCccccCCCCCCCCCceeeEeeeee--cCCCCCCcceecceeEecCCc---eEEEECCCCccHHHHHHHH
Confidence 345777777764433322 2223444444433 123345689999999999999 9999999999999999999
Q ss_pred HHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcccc-----------------cccc-c
Q 006094 87 LNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-I 140 (661)
Q Consensus 87 a~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~-----------------I~~P-~ 140 (661)
.+.. |..|.+.+|+... ..+.++|.+|+-++|+ -++.+|+++..+..+ +..| -
T Consensus 383 vG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~G 461 (580)
T COG4618 383 VGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQG 461 (580)
T ss_pred HcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCC
Confidence 9998 8899999999732 1246899999999998 488999987653211 1123 2
Q ss_pred ccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 141 YDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 141 yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
||-..+. .++++.+++.-++.+.-++.+...||+...+|- .-+..+.+ -.-.++.+|.+..
T Consensus 462 YdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~------~GE~AL~~-Ai~~~k~rG~~vv 526 (580)
T COG4618 462 YDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS------EGEAALAA-AILAAKARGGTVV 526 (580)
T ss_pred ccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch------hHHHHHHH-HHHHHHHcCCEEE
Confidence 5554443 345566677666767777777777888888875 12233333 3334455565543
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.2e-10 Score=120.29 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=97.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-----~g~I~lD~~~~~- 104 (661)
.++++.++...| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |+ .|.|.++|....
T Consensus 6 ~~l~~~nl~~~~----~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYY----DTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEe----CCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc
Confidence 367787877766 23468999999999999 99999999999999999999998 43 688888885321
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--c--c--c----c-------cc-----ccccccccccccccee
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--K--A----V-------QV-----PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g--~--~----I-------~~-----P~yd~~~~~r~~~~~~ 154 (661)
...++++||++..|+ .++.+++..... + . . + .. +..+......++++..
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred cccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 234678899988887 788888753210 0 0 0 0 00 0112222334445555
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++-.+.+++.||+...+|.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~ 183 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDP 183 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 66666667777777777888887775
No 304
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.3e-10 Score=118.23 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=90.2
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----ccccccccCCCCCCchhhHHH
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLE 125 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i~~~fq~p~~~d~~tl~e 125 (661)
++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.+.++|.... .+.+++++|++..|+..++.+
T Consensus 14 ~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 7999999999999 99999999999999999999998 88999999986432 235788999988888788888
Q ss_pred HHHhhhcccc----------------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 126 NIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 126 nL~~L~~g~~----------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++........ +.. +..+...+..++++..++.-++.++-.+.+++.||+...+|.
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 91 NIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 8753211000 000 112222233444555555556666666666677888877776
No 305
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.07 E-value=8.4e-11 Score=123.25 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=72.6
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-------cc
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SR 106 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~-------~~ 106 (661)
+++.+++..|. .+...+++++||.+++|+ ++||+|+||||||||+++|.++++..|.|.+||.... ++
T Consensus 3 i~~~nls~~~~--~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYT--EGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred EEEEEEEEEeC--CCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhh
Confidence 45666666653 223458999999999999 9999999999999999999999977899999996421 23
Q ss_pred ccccccCCCCCCchhhHHHHHH
Q 006094 107 IIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~ 128 (661)
.+++++|++.+|+. ++.+|+.
T Consensus 78 ~i~~v~q~~~lf~~-tv~~nl~ 98 (275)
T cd03289 78 AFGVIPQKVFIFSG-TFRKNLD 98 (275)
T ss_pred hEEEECCCcccchh-hHHHHhh
Confidence 57899999998874 8888885
No 306
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.06 E-value=1.9e-10 Score=117.28 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=91.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCCcccc-----
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS----- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~~~~~----- 104 (661)
|+++.++...| +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 1 ~i~~~nl~~~~----~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSV----EDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEe----CCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 45677776666 23568999999999999 99999999999999999999993 78899999986321
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhh----hc--c-c----------------ccccc-c-ccccc-ccccccceee
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGL----KE--G-K----------------AVQVP-I-YDFKS-SSRIGYRTLE 155 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L----~~--g-~----------------~I~~P-~-yd~~~-~~r~~~~~~~ 155 (661)
...+++++|++..++..+...++... .. . . ....| . .+... +..++++..+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 12366778887665543322221110 00 0 0 00011 0 01111 1344455566
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++-++.+++.||+...+|.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~ 178 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDI 178 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCH
Confidence 6667777777777777888888886
No 307
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.06 E-value=1.7e-10 Score=133.96 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=105.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++...|....+...++++++|.+++|+ +++|+|+||||||||+++|++++ |+.|.+.+||....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHH
Confidence 478888988887433334679999999999999 99999999999999999999998 78999999997421
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhh--cccc--------------ccc-cccccccccccccceeeccCccEE
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK--EGKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~--~g~~--------------I~~-P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
.+.+++.||++.+|+..++.+++.... .+.. ... ...+...+..++++..++.-++.+
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 235789999999888888888775311 1100 000 112233334445555666666667
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-++.+++.||+...+|.
T Consensus 160 ~~~P~lLllDEP~~gLD~ 177 (648)
T PRK10535 160 MNGGQVILADEPTGALDS 177 (648)
T ss_pred hcCCCEEEEECCCCCCCH
Confidence 777777777888888886
No 308
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=1.3e-10 Score=117.71 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=95.1
Q ss_pred eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------ccc
Q 006094 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (661)
Q Consensus 36 i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~~ 107 (661)
+.++...|. +...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.
T Consensus 3 ~~~l~~~~~---~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 3 FENVTFAYD---PGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEeC---CCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 445544442 12458999999999999 99999999999999999999998 78999999986321 234
Q ss_pred cccccCCCCCCchhhHHHHHHhhhccc---cc-------cc-------c-c----cccccccccccceeeccCccEEEEE
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKEGK---AV-------QV-------P-I----YDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~g~---~I-------~~-------P-~----yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
+++.+|++..++ .++.+++....... .+ .. | . .+......++++..++.-+..++.+
T Consensus 77 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 77 IGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred EEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 788999988876 58888875321100 00 00 0 0 0111223344555666667777888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 156 p~llllDEP~~~LD~ 170 (236)
T cd03253 156 PPILLLDEATSALDT 170 (236)
T ss_pred CCEEEEeCCcccCCH
Confidence 888888888888886
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.06 E-value=1.2e-10 Score=112.36 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=51.9
Q ss_pred eeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc
Q 006094 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (661)
Q Consensus 35 ei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~ 102 (661)
++.+++..| +...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++..
T Consensus 2 ~~~~l~~~~----~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~ 63 (163)
T cd03216 2 ELRGITKRF----GGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE 63 (163)
T ss_pred EEEEEEEEE----CCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 344555554 33579999999999999 99999999999999999999998 789999998863
No 310
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.06 E-value=6.4e-11 Score=118.69 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=95.3
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------cc
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------SS 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~~ 105 (661)
+++.++...|. .+...+++++||.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++... ..
T Consensus 3 l~~~~l~~~~~--~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYR--PNLPPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecC--CCCcccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 45666666653 223468999999999999 99999999999999999999998 7899999998632 12
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccc---------ccccc-c-----------cccccccccccceeeccCccEEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGK---------AVQVP-I-----------YDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~---------~I~~P-~-----------yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
+.+++.+|++..++ .++.+++.....-. ..... . .+......+.++..++.-++.++.
T Consensus 78 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 78 SRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred hhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 35788999988776 47888774221100 00000 0 011222333444555566666777
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 157 ~p~llllDEP~~~LD~ 172 (221)
T cd03244 157 KSKILVLDEATASVDP 172 (221)
T ss_pred CCCEEEEeCccccCCH
Confidence 7777777777777775
No 311
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2.3e-10 Score=117.02 Aligned_cols=140 Identities=17% Similarity=0.227 Sum_probs=96.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p---~~g~I~lD~~~~~-- 104 (661)
++++.++...| +...++++++|.+.+|+ +++|+|+||||||||+++|+++. | +.|.|.+||....
T Consensus 3 ~l~~~~v~~~~----~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 3 RIEVENLNTYF----DDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred EEEEEeEEEEe----CCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 35566666555 33569999999999999 99999999999999999999974 3 6899999997431
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhhc--c----ccccc----------------cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAVQV----------------PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g----~~I~~----------------P~yd~~~~~r~~~~~~~ 155 (661)
...+++++|++..|+. ++.+++..... + ..... +..+......++++..+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence 2347899999988874 88888753211 0 00000 01122222334445555
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++....+++.||+...+|.
T Consensus 155 v~laral~~~p~llllDEP~~gLD~ 179 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDP 179 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCH
Confidence 5566666677777777888887775
No 312
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.06 E-value=5e-11 Score=118.33 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=90.4
Q ss_pred eeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccccc
Q 006094 35 EIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNF 112 (661)
Q Consensus 35 ei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~f 112 (661)
++.++...|....+ ...+++++||.+++|+ +++|+|+||||||||++.|++++ |..|.|.++| .+++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~ 72 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVS 72 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEe
Confidence 45566555521100 1369999999999999 99999999999999999999998 8899999988 477888
Q ss_pred CCCCCCchhhHHHHHHhhhccc---------------cccc-c-----ccccccccccccceeeccCccEEEEEehhhhh
Q 006094 113 DDPRLTDYDTLLENIRGLKEGK---------------AVQV-P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 113 q~p~~~d~~tl~enL~~L~~g~---------------~I~~-P-----~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
|++.+++ .++.+++.....-. .+.. | ..+......++++..++.-++.++-+..+++.
T Consensus 73 q~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llll 151 (204)
T cd03250 73 QEPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLL 151 (204)
T ss_pred cCchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8887774 47777764321100 0000 0 01111223334455556666666667777777
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 152 DEP~~~LD~ 160 (204)
T cd03250 152 DDPLSAVDA 160 (204)
T ss_pred eCccccCCH
Confidence 777777765
No 313
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.06 E-value=9.7e-11 Score=118.86 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=90.4
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--ccccccccCCCCCCchhhHHHHHHh
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... ....++++|++..++..++.+++..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 468999999999 99999999999999999999998 78999999986432 1224688999988888888888754
Q ss_pred hh----ccc---c--------c---cc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 130 LK----EGK---A--------V---QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 130 L~----~g~---~--------I---~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.. .+. . + .. ...+......++++..++.-+..++.++.+++.||+...+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 147 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 21 110 0 0 00 011222333455566666667777777878888888888886
No 314
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.05 E-value=5.2e-11 Score=136.05 Aligned_cols=166 Identities=14% Similarity=0.193 Sum_probs=110.8
Q ss_pred CCCCCcccccccchhhhccc----C-CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKK----K-DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~----~-~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
..+.+|+..+++...+.... + ....+++.+++..| ..+...+++++||.+++|+ .++|+||||||||||+
T Consensus 284 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y--~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl 358 (569)
T PRK10789 284 SAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY--PQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLL 358 (569)
T ss_pred HHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEEC--CCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHH
Confidence 34567777777654332111 0 01235566654444 2233568999999999999 9999999999999999
Q ss_pred HHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc---c-------------c-cc
Q 006094 84 EKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QV 138 (661)
Q Consensus 84 k~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~-------------I-~~ 138 (661)
+.|.+++ |..|.|.+||.... ++.+++++|+|.+|+ .++.+|+....... . + ..
T Consensus 359 ~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~l 437 (569)
T PRK10789 359 SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRL 437 (569)
T ss_pred HHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 9999998 88999999987421 245789999999887 48888885321110 0 0 01
Q ss_pred cc-cccc----cccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 PI-YDFK----SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P~-yd~~----~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
|. ++.. ....++++..++.-++.++-++.+++.||+...+|.
T Consensus 438 p~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 438 PQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred cCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 11 1111 122345566667777777777777777888877775
No 315
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.05 E-value=4.1e-11 Score=137.06 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=114.2
Q ss_pred CCCCCCcccccccchhhhcccC------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKK------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
+.++.+|+..+++.+++..... ....+++.+++..|. .+...+|+++||.+++|+ .++|+|||||||||
T Consensus 307 ~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~--~~~~~il~~i~~~i~~G~---~~aivG~sGsGKST 381 (574)
T PRK11160 307 VIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYP--DQPQPVLKGLSLQIKAGE---KVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECC--CCCCcceecceEEECCCC---EEEEECCCCCCHHH
Confidence 4567788888887655432111 012466666655552 222468999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhcc----------------cccc
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAVQ 137 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I~ 137 (661)
|++.|++.+ |..|.|.+||.... ++.+++++|++.+|+ .++.+|+...... ..+.
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~ 460 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLE 460 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHc
Confidence 999999998 89999999997421 245789999999987 5888888532211 0111
Q ss_pred cc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .||-.. ...++++.+++.-++.++-++..++.||+...+|.
T Consensus 461 ~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~ 508 (574)
T PRK11160 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA 508 (574)
T ss_pred CccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11 122211 12345566667777777777777777888877775
No 316
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.05 E-value=5.3e-11 Score=120.54 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=86.0
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C----CceEEecCCcccc-----ccccccccCCCC--CCc
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p----~~g~I~lD~~~~~-----~~~i~~~fq~p~--~~d 119 (661)
++++++|.+++|+ +++|+|+||||||||+++|++++ | +.|.|.++|.... .+.+++++|++. .++
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999998 6 7999999996421 235788999874 333
Q ss_pred hhhHHHHHHhhh--ccc-c-------------cccc----ccccccccccccceeeccCccEEEEEehhhhhccccCCCC
Q 006094 120 YDTLLENIRGLK--EGK-A-------------VQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (661)
Q Consensus 120 ~~tl~enL~~L~--~g~-~-------------I~~P----~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (661)
..++.+++.... .+. . ...+ ..+......++++..++.-++.++.++.+++.||+...+|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 445555543211 010 0 0011 1122233344555666666677777777777788888777
Q ss_pred E
Q 006094 180 L 180 (661)
Q Consensus 180 l 180 (661)
.
T Consensus 158 ~ 158 (230)
T TIGR02770 158 V 158 (230)
T ss_pred H
Confidence 5
No 317
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=7.4e-11 Score=116.25 Aligned_cols=167 Identities=13% Similarity=0.214 Sum_probs=110.1
Q ss_pred ceeeeecccceeeecc-----CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--
Q 006094 32 DRYEIVPIEDTLSFEK-----GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~-----g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-- 103 (661)
..+++.+++++|...- ..+.+++.|||.++++. .+||+|.||||||||+++|++.+ |.+|.|.+++...
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~ 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc
Confidence 3566778888875433 35579999999999999 99999999999999999999999 8999999998632
Q ss_pred -----cccccccccCCCCC-C-chhhHHHHHHh-hhccccc-----------------cccc-cccccccccccceeecc
Q 006094 104 -----SSRIIDGNFDDPRL-T-DYDTLLENIRG-LKEGKAV-----------------QVPI-YDFKSSSRIGYRTLEVP 157 (661)
Q Consensus 104 -----~~~~i~~~fq~p~~-~-d~~tl~enL~~-L~~g~~I-----------------~~P~-yd~~~~~r~~~~~~~v~ 157 (661)
..+.+.+.||+|+. | +...+.+.+.. |+..... .+|- -++.++....++..+++
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 23457889999864 3 33333333321 1111111 1232 23445555555667777
Q ss_pred CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
-++.+|+++-.++.|+-...+|+ .....++.-+.....+-|.+.
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~------smrsQl~NL~LeLQek~GiSy 203 (267)
T COG4167 160 LARALILRPKIIIADEALASLDM------SMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccH------HHHHHHHHHHHHHHHHhCceE
Confidence 78888888887777765555664 233444444444444446543
No 318
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=2.7e-10 Score=120.72 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=99.7
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEecCCcccc-
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll------p~~g~I~lD~~~~~- 104 (661)
.++.+.++...| +...+|++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 44 ~~l~i~nl~~~~----~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 44 AKLSVEDLDVYY----GDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred ceEEEEEEEEEe----CCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 467777777666 33579999999999999 99999999999999999999997 36899999986321
Q ss_pred --------ccccccccCCCCCCchhhHHHHHHhhhc--cc---------------c------------ccc-----cccc
Q 006094 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---------------A------------VQV-----PIYD 142 (661)
Q Consensus 105 --------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~---------------~------------I~~-----P~yd 142 (661)
...+++++|++.+|+ .++.+++..... +. . +.. ...+
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 134788999988887 488888763211 00 0 000 0112
Q ss_pred cccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 143 ~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
...+..++++..++..++.++.++.+++.||+...+|.
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~ 233 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 22233444555666667777777777778888887775
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.05 E-value=1.3e-10 Score=116.43 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=89.6
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccccccccCCCCC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~i~~~fq~p~~ 117 (661)
..+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... ++.+++.+|++..
T Consensus 14 ~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 14 LATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 568999999999999 99999999999999999999998 78999999886321 1347789999887
Q ss_pred CchhhHHHHHHhhhccc--c-------ccc-cc-----------cccccccccccceeeccCccEEEEEehhhhhccccC
Q 006094 118 TDYDTLLENIRGLKEGK--A-------VQV-PI-----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (661)
Q Consensus 118 ~d~~tl~enL~~L~~g~--~-------I~~-P~-----------yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (661)
++ .++.+++....... . ... +. .+......++++..++.-++.++.++.+++.||+..
T Consensus 91 ~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 169 (218)
T cd03290 91 LN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169 (218)
T ss_pred cc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 74 57888875421100 0 000 00 011223344455566666677777777777788887
Q ss_pred CCCE
Q 006094 177 LIDL 180 (661)
Q Consensus 177 llDl 180 (661)
.+|.
T Consensus 170 ~LD~ 173 (218)
T cd03290 170 ALDI 173 (218)
T ss_pred ccCH
Confidence 7775
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.05 E-value=5.2e-11 Score=135.17 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=111.3
Q ss_pred CCCCCcccccccchhhhcccC----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
..+.+|+..+++...+..... ....+++.+++..|. .+...+++++||.+++|+ .++|+|+||||||||++
T Consensus 288 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 288 RQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPP--GGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLAR 362 (544)
T ss_pred HHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcC--CCCccccccceEEEcCCC---EEEEECCCCCCHHHHHH
Confidence 345677777775543322111 112466777665552 233568999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---cc-------------c-ccc
Q 006094 85 KVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP 139 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~~-------------I-~~P 139 (661)
.|++.+ |..|.|.+||... .++.+++++|+|..|+. ++.+|+...... +. + ..|
T Consensus 363 ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 441 (544)
T TIGR01842 363 LIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLP 441 (544)
T ss_pred HHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 999998 8899999998732 12457899999998874 888888632110 00 0 011
Q ss_pred -ccccc----cccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 140 -IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 140 -~yd~~----~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.. ....++++.+++.-++.++-++.+++.||+...+|.
T Consensus 442 ~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~ 487 (544)
T TIGR01842 442 DGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487 (544)
T ss_pred cccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCH
Confidence 11111 122345566667777777777777777888877775
No 321
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.05 E-value=1.2e-10 Score=119.64 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=63.5
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-------ccccccccCCCCCCchhhHH
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~ 124 (661)
+|+++||.+.+|+ ++||+|+||||||||+++|++++|..|.|.++|.... ...++++||++..+...++.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999 9999999999999999999999876899999986421 12367889988777777888
Q ss_pred HHHHh
Q 006094 125 ENIRG 129 (661)
Q Consensus 125 enL~~ 129 (661)
+++..
T Consensus 88 ~nl~~ 92 (248)
T PRK03695 88 QYLTL 92 (248)
T ss_pred HHHHh
Confidence 87764
No 322
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.05 E-value=2e-10 Score=129.22 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
++++.+++. .+++++||.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|....
T Consensus 257 ~l~~~~l~~---------~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 257 RLKVDNLSG---------PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred EEEEeCccc---------CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 566666542 35999999999999 99999999999999999999998 78999999986321
Q ss_pred -ccccccccCCC---CCCchhhHHHHHHhh-h----c--c-----c----------cccc--cccccccccccccceeec
Q 006094 105 -SRIIDGNFDDP---RLTDYDTLLENIRGL-K----E--G-----K----------AVQV--PIYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 105 -~~~i~~~fq~p---~~~d~~tl~enL~~L-~----~--g-----~----------~I~~--P~yd~~~~~r~~~~~~~v 156 (661)
++.++|++|++ ..++..++.+++... . . + . .... ...+...+..++++..++
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH
Confidence 23478999986 466767787777421 0 0 0 0 0011 112333344556677777
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-+..++.++.+++.||+...+|.
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~ 428 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDV 428 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCH
Confidence 888888889999999999999997
No 323
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.04 E-value=7.9e-11 Score=134.64 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=113.1
Q ss_pred CCCCCCcccccccchhhhcccC-------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKK-------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~-------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (661)
+.++.+|+..+++.+....... ...-+++.+++..+ ++...+|+++||.+++|+ .++|+|+||||||
T Consensus 317 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~---~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKS 390 (588)
T PRK11174 317 AVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILS---PDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKT 390 (588)
T ss_pred HHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEec---cCCCeeeeeeEEEEcCCC---EEEEECCCCCCHH
Confidence 3456778888886643211100 01125555554322 123568999999999999 9999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---c-------------ccc
Q 006094 81 VFTEKVLNFMPSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---K-------------AVQ 137 (661)
Q Consensus 81 TLak~La~llp~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~-------------~I~ 137 (661)
||++.|.+++|..|.|.+||... .++.+++++|+|.+|+ .++.+|+...... + .+.
T Consensus 391 TL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 99999999998899999999732 2346889999999987 5888888643211 0 010
Q ss_pred -cc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 -VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 -~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .|+-..+ ..++++.+++.-++.++-++..++.||....+|.
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11 1232222 2455677777777778878888888888887775
No 324
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.04 E-value=2e-10 Score=129.10 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=103.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEecCCcccc-----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS----- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-~~g~I~lD~~~~~----- 104 (661)
.++++.+++..|.. .+...+++++||.+.+|+ ++||+|+||||||||+++|++.+ | ..|.|.+++....
T Consensus 256 ~~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVI-NPHRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCcccccc-cccccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 47888888766521 123468999999999999 99999999999999999999998 4 6899999986321
Q ss_pred ---ccccccccCCC---CCCchhhHHHHHHh-----hhc--c-c------c-------cccc--ccccccccccccceee
Q 006094 105 ---SRIIDGNFDDP---RLTDYDTLLENIRG-----LKE--G-K------A-------VQVP--IYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 ---~~~i~~~fq~p---~~~d~~tl~enL~~-----L~~--g-~------~-------I~~P--~yd~~~~~r~~~~~~~ 155 (661)
++.+++++|++ ..++..++.+++.. +.. . . . .... ..+......++++..+
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 23478889986 46776777776642 100 0 0 0 0111 1122233455566677
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~ 436 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDV 436 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCH
Confidence 7778888888888889999999997
No 325
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.04 E-value=7.2e-11 Score=138.37 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=114.3
Q ss_pred CCCCCcccccccchhhhcccC------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
..+.+|+..+++.+++..... ....+++++++..|... ....+++++||.+++|+ .++|+|+|||||||+
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTL 523 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNR-PDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTV 523 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCC-CCCccccCceEEEcCCC---EEEEECCCCCCHHHH
Confidence 455677777776654432111 12246677766555321 12468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc----------------ccc-
Q 006094 83 TEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AVQ- 137 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I~- 137 (661)
++.|.+++ |..|.|.+||... .++.+++++|+|.+|+ .++++|+.-..... .+.
T Consensus 524 l~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~ 602 (711)
T TIGR00958 524 AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602 (711)
T ss_pred HHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999998 8999999999732 2345889999999887 68888886321110 010
Q ss_pred cc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .+|-..+ ..++++.+++.-++.++-++..++.||+...+|.
T Consensus 603 lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~ 650 (711)
T TIGR00958 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA 650 (711)
T ss_pred CCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCH
Confidence 11 1222222 2445666777777777777777777888877776
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.04 E-value=7e-11 Score=147.74 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=131.8
Q ss_pred CCCCCCCcccccccchhhhccc--C---------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCC
Q 006094 7 SGADSPRRRPGLLRDQVQLVKK--K---------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPS 75 (661)
Q Consensus 7 ~~~~s~~r~~~ll~~~~~l~~~--~---------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpS 75 (661)
++.++.+|++.+++.++.+... . ....+++.+++..|... ....+|+++||.+++|+ .+||+|+|
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~---~vAIVG~S 1203 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISR-PNVPIYKDLTFSCDSKK---TTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCC-CCCccccCeeEEEcCCC---EEEEECCC
Confidence 3445678888888765533110 0 01236666666665321 23469999999999999 99999999
Q ss_pred CCcHHHHHHHHHHhC-C------------------------------------------------------CceEEecCC
Q 006094 76 GAGKTVFTEKVLNFM-P------------------------------------------------------SIAVITMDN 100 (661)
Q Consensus 76 GSGKSTLak~La~ll-p------------------------------------------------------~~g~I~lD~ 100 (661)
||||||+++.|.+++ | ..|.|.+||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 999999999999998 6 489999999
Q ss_pred ccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---cc-------------c-ccc-ccccccc----ccccc
Q 006094 101 YND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFKSS----SRIGY 151 (661)
Q Consensus 101 ~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~~-------------I-~~P-~yd~~~~----~r~~~ 151 (661)
... .++.+++++|+|.+|+ .++++||...... +. | ..| .||-..+ ..+++
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 742 2356899999999996 7888888643221 00 1 112 1333332 24567
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHH-hhCCCHHHHHHHH
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQI 214 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~-eRG~s~EeVi~q~ 214 (661)
+.++++.++.++-++..++.||....+|. ...+.+....+... .+|++.--|.|+.
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~-------~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDS-------NSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCH-------HHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 77888888999999999998998888885 22233333333332 2466666666665
No 327
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.04 E-value=8.8e-11 Score=134.48 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=110.1
Q ss_pred CCCCCcccccccchhhhcccC----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
..+.+|+..+++...+-.... ....+++++++..|. . ...+++++||.+++|+ .|+|+|+||||||||++
T Consensus 312 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~--~-~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 312 VVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYR--D-DNLVLQNINLSVPSRG---FVALVGHTGSGKSTLAS 385 (592)
T ss_pred HHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeC--C-CCceeeceeEEEcCCC---EEEEECCCCCCHHHHHH
Confidence 455677777766533211110 112356666655553 1 2458999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhcc---------------cccc-cc-
Q 006094 85 KVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG---------------KAVQ-VP- 139 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------------~~I~-~P- 139 (661)
.|.+++ |..|.|.+||.... ++.+++++|+|.+|+. ++.+|+.....- +.+. .|
T Consensus 386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999998 88999999997422 3468899999999984 888888542210 0010 12
Q ss_pred cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 140 IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 140 ~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+|-.. ...++++.+++.-++.++-++..++.||+...+|.
T Consensus 465 Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~ 509 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509 (592)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 122211 12345566666666666666777777788777775
No 328
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.03 E-value=3.4e-10 Score=117.84 Aligned_cols=124 Identities=14% Similarity=0.079 Sum_probs=77.8
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHH
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~en 126 (661)
+.+.++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.. .+.++.+..++..++.++
T Consensus 35 ~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~------~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 35 KTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV------SVIAISAGLSGQLTGIEN 105 (264)
T ss_pred CceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE------eEEecccCCCCCCcHHHH
Confidence 34579999999999999 99999999999999999999998 788999988741 122223333333344444
Q ss_pred HHhhh--cccc--------------cc-ccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 127 IRGLK--EGKA--------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 127 L~~L~--~g~~--------------I~-~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.... .+.. .. .+..+......++++..++.-+..++.++.+++.||+...+|.
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~ 176 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ 176 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 43210 0000 00 0112222333444455555555666666666667777777775
No 329
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=5.8e-10 Score=114.22 Aligned_cols=122 Identities=18% Similarity=0.311 Sum_probs=78.3
Q ss_pred ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchh---
Q 006094 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYD--- 121 (661)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~--- 121 (661)
....+++|++|||.+.+|+ .|||+|+||||||||++.|++.+ |+.|.+..+|.-.+--.++.-|+ |.+-..+
T Consensus 36 ~~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-pelTGreNi~ 111 (249)
T COG1134 36 KVAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-PELTGRENIY 111 (249)
T ss_pred CcceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-cccchHHHHH
Confidence 4457899999999999999 99999999999999999999999 99999999986322111222222 1111111
Q ss_pred ---------------hHHHHHHhhhcccccccccccccccccc--ccceeeccCccEEEEEehhhhh
Q 006094 122 ---------------TLLENIRGLKEGKAVQVPIYDFKSSSRI--GYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 122 ---------------tl~enL~~L~~g~~I~~P~yd~~~~~r~--~~~~~~v~~a~VVIVEGilaL~ 171 (661)
.+.+.++.-.-|..+..|+-.++.+... +......-..+++|+|-.++.-
T Consensus 112 l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 112 LRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 1111122222356778888777766543 2222223345677777555543
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.03 E-value=1.6e-10 Score=112.98 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=77.0
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc-------cccccccCCCCCCch
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~-------~~i~~~fq~p~~~d~ 120 (661)
...++++++|.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+++..... ..+++.||
T Consensus 11 ~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------- 80 (180)
T ss_pred CeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-------
Confidence 3569999999999999 99999999999999999999998 789999999864321 12445554
Q ss_pred hhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 121 DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 121 ~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+..+.-.. ..+......++++..++.-++.++.++.+++.||+...+|.
T Consensus 81 -----~l~~~gl~~-----~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 81 -----ALELLGLAH-----LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred -----HHHHcCCHh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 111110000 11122233444455556666677777777777888888875
No 331
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=2.4e-10 Score=117.86 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=99.0
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc--
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~-- 104 (661)
++++.++...| +...++++++|.+.+|+ +++|+|+||||||||++.|+++++ ..|.|.++|....
T Consensus 7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 7 AIKVKDLSFYY----NTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred eEEEEEEEEEE----CCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 66777777665 33568999999999999 999999999999999999999973 3799999986321
Q ss_pred -------ccccccccCCCCCCchhhHHHHHHhhh--cc----cc----c-------cc-----cccccccccccccceee
Q 006094 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLK--EG----KA----V-------QV-----PIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 -------~~~i~~~fq~p~~~d~~tl~enL~~L~--~g----~~----I-------~~-----P~yd~~~~~r~~~~~~~ 155 (661)
...+++++|++..|+ .++.+++.... .+ .. + .. ...+......++++..+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 134788999998887 78888875321 00 00 0 00 01122223344455566
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-++.++.++.+++.||+...+|.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDP 183 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCH
Confidence 6667777777877778888888885
No 332
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.8e-10 Score=119.10 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=97.4
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCC------ccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN------YND 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~------~~~ 103 (661)
.+++++.++.++| +...+++++||.+.+|+ +++|+|+||||||||++.|++.. |..|.|.++| ...
T Consensus 8 ~~~i~~~~~~~~~----~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYI----NDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEec----CCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccc
Confidence 4577888887776 45678999999999999 99999999999999999999998 6676555554 221
Q ss_pred -------cccccccccCCCCCCchhhHHHHHHhhhc--c---c-cc-----------cc-----ccccccccccccccee
Q 006094 104 -------SSRIIDGNFDDPRLTDYDTLLENIRGLKE--G---K-AV-----------QV-----PIYDFKSSSRIGYRTL 154 (661)
Q Consensus 104 -------~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g---~-~I-----------~~-----P~yd~~~~~r~~~~~~ 154 (661)
....+++.+|++..++..++.+++..... + . .. .. ...+...+..++++..
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHH
Confidence 12347889999988887888888863211 1 0 00 00 0111222223334455
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-++.++-++.+++.||+...+|.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~ 186 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDI 186 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCH
Confidence 55566666777777777888777775
No 333
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.02 E-value=1.2e-10 Score=135.86 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=112.8
Q ss_pred CCCCCcccccccchhhhcccC-------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK-------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~-------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
..+.+|+..+++.+++..... ....+++.+++.+|. .+...+++++||.+++|+ .|+|+|+|||||||
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~--~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKST 506 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYP--GQETPALDNVSLTIRPGE---KVAIIGRIGSGKST 506 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeC--CCCccceeeeeEEECCCC---EEEEECCCCCCHHH
Confidence 345667777776544321110 112356666655552 223568999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc----------------cc-
Q 006094 82 FTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AV- 136 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I- 136 (661)
|++.|++++ |..|.|.+||... .++.+++++|++.+|+ .++.+|+......- .+
T Consensus 507 LlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~ 585 (694)
T TIGR03375 507 LLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVR 585 (694)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHH
Confidence 999999998 8999999999742 2346889999999887 58888886322110 00
Q ss_pred ccc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .|+-.. ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 586 ~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 586 RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred hCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 012 122221 12445566677777777777777777888887775
No 334
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.8e-10 Score=125.77 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=102.1
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc-------ccc
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-------SSR 106 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-------~~~ 106 (661)
++..++...|. ...++|+++||.+++|+ -|||+|+|||||||+++.|.+++...|.|.+||... .++
T Consensus 352 I~F~dV~f~y~---~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 352 IEFDDVHFSYG---PKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred EEEEeeEEEeC---CCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhh
Confidence 66666555442 23459999999999999 999999999999999999999988899999999842 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc------------ccc----cc-cc-cccccccc----ccccceeeccCccEEEE
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE------------GKA----VQ-VP-IYDFKSSS----RIGYRTLEVPSSRIVII 164 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~------------g~~----I~-~P-~yd~~~~~----r~~~~~~~v~~a~VVIV 164 (661)
.+++++|+..+|+ +++..|+..-.. .-. +. .| .|+-..++ .++++.+++.-.+.++-
T Consensus 426 ~Ig~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 426 SIGVVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred heeEeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 5899999999987 677777752111 000 00 11 12222332 34567777888888999
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
+.+.++.||....+|-
T Consensus 505 da~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 505 DAPILLLDEATSALDS 520 (591)
T ss_pred CCCeEEecCcccccch
Confidence 9999988998887775
No 335
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.01 E-value=1.2e-10 Score=131.53 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=110.4
Q ss_pred CCCCCcccccccchhhhcccC-----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK-----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~-----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
..+.+|+..+++.+.+..... ....+++.+++..|. .+...+++++||.+++|+ .++|+|+||||||||+
T Consensus 291 ~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~--~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~ 365 (529)
T TIGR02857 291 VAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYP--GRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLL 365 (529)
T ss_pred HHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECC--CCCcccccceeEEECCCC---EEEEECCCCCCHHHHH
Confidence 456677777776332211111 012456666655552 222468999999999999 9999999999999999
Q ss_pred HHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---ccc--------------cc
Q 006094 84 EKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---KAV--------------QV 138 (661)
Q Consensus 84 k~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~~I--------------~~ 138 (661)
+.|.+++ |..|.|.+||... .++.+++++|+|.+|+ .++.+|+...... +.+ ..
T Consensus 366 ~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l 444 (529)
T TIGR02857 366 NLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAAL 444 (529)
T ss_pred HHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999998 8899999999732 1245889999999987 5899988632110 000 01
Q ss_pred c-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 P-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
| .+|-.. ...++++.+++.-++.++-++..++.||+...+|.
T Consensus 445 p~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~ 491 (529)
T TIGR02857 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491 (529)
T ss_pred cccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 1 122211 22345566667777777777777777887777775
No 336
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.9e-11 Score=118.84 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=109.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEecCCcccc----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p~~g~I~lD~~~~~---- 104 (661)
.|++++++.-... +...+|+++|+.+++|+ +.+|.||||||||||++.|++.- ...|.|.+||....
T Consensus 2 ~~L~I~dLhv~v~---~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE---GKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec---CchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCH
Confidence 3677777766652 11578999999999999 99999999999999999999984 47899999998432
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHhhhc----cccc---------------cccc--ccccc-ccccccceeeccC
Q 006094 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKE----GKAV---------------QVPI--YDFKS-SSRIGYRTLEVPS 158 (661)
Q Consensus 105 ----~~~i~~~fq~p~~~d~~tl~enL~~L~~----g~~I---------------~~P~--yd~~~-~~r~~~~~~~v~~ 158 (661)
+..+...||.|..++.-++.+.|....+ ...+ ..+. .++.. ...++++..+...
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 2335568999988877776666642111 1111 0110 11111 1123344444555
Q ss_pred ccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
..++++|+-+++.||+...+|+ ..++.+-+....+.+.|.+.
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDI-------dalk~V~~~i~~lr~~~~~~ 197 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDI-------DALKIVAEGINALREEGRGV 197 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccH-------HHHHHHHHHHHHHhcCCCeE
Confidence 6778889999998998888887 44555555555565556554
No 337
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.00 E-value=4.7e-10 Score=126.73 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=98.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.+++. .+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++....
T Consensus 267 ~~l~~~~l~~---------~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG---------EGFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC---------CCccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 4677777762 14899999999999 99999999999999999999998 78999999886321
Q ss_pred --ccccccccCCC---CCCchhhHHHHHHhhh--------ccc-----------cccc--cccccccccccccceeeccC
Q 006094 105 --SRIIDGNFDDP---RLTDYDTLLENIRGLK--------EGK-----------AVQV--PIYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 105 --~~~i~~~fq~p---~~~d~~tl~enL~~L~--------~g~-----------~I~~--P~yd~~~~~r~~~~~~~v~~ 158 (661)
...++|++|++ .+++..++.+++.... ... .... ...+...+..++++..++.-
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 13467888874 3566666666653210 000 0011 11233344456667777777
Q ss_pred ccEEEEEehhhhhccccCCCCE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.++.+++.||+...+|.
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcCh
Confidence 8888888888899999999997
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.00 E-value=9e-11 Score=146.78 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=87.2
Q ss_pred CCCCCCcccccccchhhhcccC------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKK------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
+.++..|+..+++..+.+.... ....+++.++...|... ....+|++++|.+++|+ ++||+|+|||||||
T Consensus 351 a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKST 426 (1466)
T PTZ00265 351 SLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGK---TYAFVGESGCGKST 426 (1466)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCC-CCCceeccceEEEcCCC---EEEEECCCCCCHHH
Confidence 4556778888887655432211 01135667766666321 12469999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecC-Cccc-------cccccccccCCCCCCchhhHHHHHHh
Q 006094 82 FTEKVLNFM-PSIAVITMD-NYND-------SSRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD-~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
|+++|.+++ |..|.|.++ +... .++.+++++|+|.+|+ .++.+|+..
T Consensus 427 Ll~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~ 482 (1466)
T PTZ00265 427 ILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKY 482 (1466)
T ss_pred HHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHh
Confidence 999999998 899999994 4421 1245889999999997 599999864
No 339
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.99 E-value=6.2e-10 Score=112.69 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=82.1
Q ss_pred ccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHH
Q 006094 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (661)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~ 124 (661)
.++...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++......... ...++..++.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-----~~~~~~~tv~ 102 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG-----GGFNPELTGR 102 (224)
T ss_pred hcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhccc-----ccCCCCCcHH
Confidence 4466789999999999999 99999999999999999999998 7899999998642211111 1122234455
Q ss_pred HHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 125 ENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 125 enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+++..... +. .... +..+...+..++++..++.-++.++-+..+++.||+...+|.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 55432110 00 0000 112223334445555666666667777777777888877775
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.99 E-value=1.4e-10 Score=131.85 Aligned_cols=141 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
.+++.+++..|. +...+++++||.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||....
T Consensus 322 ~i~~~~v~f~y~---~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQ---DNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeC---CCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHH
Confidence 466677666653 22358999999999999 99999999999999999999998 89999999997422
Q ss_pred ccccccccCCCCCCchhhHHHH------------HHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 105 SRIIDGNFDDPRLTDYDTLLEN------------IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~en------------L~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
++.+++++|++.+|+. ++.+| +..+..+..+..+.-...-...++++.+++.-++.++-++.+++.|
T Consensus 396 ~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred hhheEEEecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2457788998877653 22221 1111111111111000001234556667777777777777777778
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 475 E~ts~LD~ 482 (547)
T PRK10522 475 EWAADQDP 482 (547)
T ss_pred CCCCCCCH
Confidence 88887775
No 341
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.98 E-value=9.5e-10 Score=114.95 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=71.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC--------ceEEecCCccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYND 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~--------~g~I~lD~~~~ 103 (661)
|+++.+++..| +...+++++||.+++|+ +++|+|+||||||||+++|++++ |. .|.|.++|...
T Consensus 1 ml~~~nl~~~~----~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVAR----RHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEE----CCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 45666776655 34579999999999999 99999999999999999999998 55 89999998642
Q ss_pred c-------ccccccccCCCCCCchhhHHHHHHh
Q 006094 104 S-------SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 104 ~-------~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
. .+.+++++|++..+...++.+++..
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~ 106 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLL 106 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhh
Confidence 1 1235788998765545788888754
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.98 E-value=7e-10 Score=124.53 Aligned_cols=140 Identities=21% Similarity=0.198 Sum_probs=98.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.+++..+ ..+++++||.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 249 ~~i~~~~l~~~~------~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLR------QPSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCccccc------CcccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 477887776642 248999999999999 99999999999999999999998 78999999985321
Q ss_pred --ccccccccCCCC---CCchhhHHHH-----HHhhhc--c---c--------------cccccccccccccccccceee
Q 006094 105 --SRIIDGNFDDPR---LTDYDTLLEN-----IRGLKE--G---K--------------AVQVPIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 105 --~~~i~~~fq~p~---~~d~~tl~en-----L~~L~~--g---~--------------~I~~P~yd~~~~~r~~~~~~~ 155 (661)
.+.+++.+|++. .|+..++.++ +..... + . .+.....+...+..++++..+
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 123667777642 4554443332 221100 0 0 011112344445566677777
Q ss_pred ccCccEEEEEehhhhhccccCCCCE
Q 006094 156 VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.-+..++.++.+++.||+...+|.
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDV 424 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCh
Confidence 8888888888999999999999987
No 343
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.97 E-value=2.5e-09 Score=115.87 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=112.6
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCcccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~ 104 (661)
...+++.+++-.|....+...++++|||.+.+|| .++|+|.||||||-.+..+.+++| .+|.|.++|....
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 4578899999999999999999999999999999 999999999999999999999995 3678888887321
Q ss_pred -----------ccccccccCCCC--CCchhhHHHHHHhhh-------------------cccccccc--ccccccccccc
Q 006094 105 -----------SRIIDGNFDDPR--LTDYDTLLENIRGLK-------------------EGKAVQVP--IYDFKSSSRIG 150 (661)
Q Consensus 105 -----------~~~i~~~fq~p~--~~d~~tl~enL~~L~-------------------~g~~I~~P--~yd~~~~~r~~ 150 (661)
...+++.||+|- +.+..++.+.+.... ..-.|..| .++..+|+.++
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 135789999984 455555555543211 11112222 46777888888
Q ss_pred cceeeccCccEEEEEehhhhhccccCCCCEE
Q 006094 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (661)
++..++-.+-.+..|+-+++.||+.-.+|.+
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVt 191 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVT 191 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhh
Confidence 7777766666677788888888888888874
No 344
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=7.3e-10 Score=110.34 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=77.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
.+++.+++-+| +.|.+++++||.+.+|+ +-.|+||||+||||++..|.+.. |..|.+.+++..+
T Consensus 5 iL~~~~vsVsF----~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 5 ILYLDGVSVSF----GGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred eEEEeceEEEE----cceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 45566665555 78999999999999999 99999999999999999999998 7889999999421
Q ss_pred -cccccccccCCCCCCchhhHHHHHHhhh
Q 006094 104 -SSRIIDGNFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 104 -~~~~i~~~fq~p~~~d~~tl~enL~~L~ 131 (661)
.+..++..||.|..|...++.+||.-..
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~ 106 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELAL 106 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHh
Confidence 2235778999999999999999997543
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.97 E-value=4e-10 Score=128.41 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=101.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.+++..| +...+++++||.+.+|+ ++||+||||||||||+++|++.+ |..|.|.+++. ..+++
T Consensus 321 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~ 389 (552)
T TIGR03719 321 KVIEAENLSKGF----GDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAY 389 (552)
T ss_pred eEEEEeeEEEEE----CCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEE
Confidence 477887777665 34579999999999999 99999999999999999999998 78899987532 24788
Q ss_pred ccCCCC-CCchhhHHHHHHhhhc--c--c----------ccccc--ccccccccccccceeeccCccEEEEEehhhhhcc
Q 006094 111 NFDDPR-LTDYDTLLENIRGLKE--G--K----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (661)
Q Consensus 111 ~fq~p~-~~d~~tl~enL~~L~~--g--~----------~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de 173 (661)
++|++. .++..++.+++..... + . .+... ..+...+..++++..++.-+..++.++.+++.||
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 888863 6666788888754211 0 0 01111 1122334455666677777888888888888899
Q ss_pred ccCCCCE
Q 006094 174 LRPLIDL 180 (661)
Q Consensus 174 Lr~llDl 180 (661)
+...+|.
T Consensus 470 Pt~~LD~ 476 (552)
T TIGR03719 470 PTNDLDV 476 (552)
T ss_pred CCCCCCH
Confidence 9988886
No 346
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.97 E-value=1.4e-09 Score=110.37 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=63.6
Q ss_pred ccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCCHHHHHHHHHhhcccchhhccCCCCCCceEEE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII 237 (661)
..-+|+||-.+.. .+.+..|++||+++|.++|..||..|.... ...+.+++.++|..++..+..+...|.....|.++
T Consensus 120 ~~~~Vi~Gr~~~~-~v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~ 198 (217)
T TIGR00017 120 NDGIIADGRDIGT-VVFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALY 198 (217)
T ss_pred cCCEEEEEcCcce-EEeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEE
Confidence 3458999997543 255669999999999999988888776542 14578999999999888888888899888777776
Q ss_pred ECCC
Q 006094 238 INKF 241 (661)
Q Consensus 238 ~N~~ 241 (661)
.|+.
T Consensus 199 Idts 202 (217)
T TIGR00017 199 LDTS 202 (217)
T ss_pred EECC
Confidence 6543
No 347
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.96 E-value=2.8e-10 Score=133.10 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCCCcccccccchhhhcccC-------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKK-------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~-------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
.+.+|+..++..+.+..... ....+++.+++..|+ +...+|+++||.+++|+ .|+|+|+||||||||
T Consensus 443 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~---~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTL 516 (708)
T TIGR01193 443 VANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYG---YGSNILSDISLTIKMNS---KTTIVGMSGSGKSTL 516 (708)
T ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcC---CCCcceeceeEEECCCC---EEEEECCCCCCHHHH
Confidence 34566666665433321111 012466666666653 12468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhh-cc---cc-------------c-
Q 006094 83 TEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLK-EG---KA-------------V- 136 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~-~g---~~-------------I- 136 (661)
++.|++++ |..|.|.+||... .++.+++++|++.+|+. ++.+|+.... .. +. +
T Consensus 517 lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~ 595 (708)
T TIGR01193 517 AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIE 595 (708)
T ss_pred HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHH
Confidence 99999998 8999999999742 23468899999999874 8888886431 11 00 0
Q ss_pred ccc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .|+-..+ ..++++.+++.-++.++-++..++.||+...+|.
T Consensus 596 ~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~ 644 (708)
T TIGR01193 596 NMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644 (708)
T ss_pred hcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 012 1222222 2345666777777777777777777888877775
No 348
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.9e-10 Score=126.25 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=111.6
Q ss_pred CCCcccccccchhhhcccCCCc-------eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 11 SPRRRPGLLRDQVQLVKKKDSD-------RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 11 s~~r~~~ll~~~~~l~~~~~~~-------~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
-+++.+.++++.++.++.+... .++..+++..|+. .+.+|++|||.+.+|+ .|+++||||+||||++
T Consensus 508 DmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p---~k~vl~disF~v~pGk---tvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP---GKPVLSDISFTVQPGK---TVALVGPSGAGKSTIM 581 (790)
T ss_pred hHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC---CCceeecceEEecCCc---EEEEECCCCCchhHHH
Confidence 4578899999999999988644 3566666555533 3578999999999999 9999999999999999
Q ss_pred HHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhc------------ccccc-----c
Q 006094 84 EKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKE------------GKAVQ-----V 138 (661)
Q Consensus 84 k~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~------------g~~I~-----~ 138 (661)
+.|-.++ -..|.|.+||.+. .+..++.++|+.-+|+ ++...|++..+. ...|. .
T Consensus 582 RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~f 660 (790)
T KOG0056|consen 582 RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQF 660 (790)
T ss_pred HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcC
Confidence 9999998 5789999999843 2345888888877775 344334332111 11111 1
Q ss_pred c-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 P-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
| .|.-..+. .++++.++++.++-++-.+..++.||-...+|.
T Consensus 661 PegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 661 PEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred chhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 2 12222222 234556667767767766666676766655553
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.96 E-value=4.9e-10 Score=127.90 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=101.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.+++..| +...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.+++. ..++|
T Consensus 323 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~ 391 (556)
T PRK11819 323 KVIEAENLSKSF----GDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAY 391 (556)
T ss_pred eEEEEEeEEEEE----CCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEE
Confidence 477888877766 34579999999999999 99999999999999999999998 78999988532 24788
Q ss_pred ccCCC-CCCchhhHHHHHHhhhc--c--c----------ccccc--ccccccccccccceeeccCccEEEEEehhhhhcc
Q 006094 111 NFDDP-RLTDYDTLLENIRGLKE--G--K----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (661)
Q Consensus 111 ~fq~p-~~~d~~tl~enL~~L~~--g--~----------~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de 173 (661)
++|++ ..++..++.+++..... + . .+..+ ..+...+..++++..++.-+..++.++.+++.||
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 471 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88886 56666788888753211 0 0 01111 1233344555666667777777888888888899
Q ss_pred ccCCCCE
Q 006094 174 LRPLIDL 180 (661)
Q Consensus 174 Lr~llDl 180 (661)
+...+|.
T Consensus 472 Pt~~LD~ 478 (556)
T PRK11819 472 PTNDLDV 478 (556)
T ss_pred CCCCCCH
Confidence 9888886
No 350
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4.9e-10 Score=126.12 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=94.5
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc--------ccccccccCCCC---CC
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~--------~~~i~~~fq~p~---~~ 118 (661)
.+++++||.+.+|+ ++||+||||||||||+++|++++ |..|.|.++|.... ...+++.+|++. .+
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 47999999999999 99999999999999999999998 78999999986321 134678899863 77
Q ss_pred chhhHHHHHHhhhc------c---------cc-------ccc--cccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 119 DYDTLLENIRGLKE------G---------KA-------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 119 d~~tl~enL~~L~~------g---------~~-------I~~--P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
+..++.+++..... + .. ... ...+...+..++++..++.-+..++.++.+++.||+
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 77788887642100 0 00 111 112233344566677778888888889999999999
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 424 t~~LD~ 429 (501)
T PRK11288 424 TRGIDV 429 (501)
T ss_pred CCCCCH
Confidence 999997
No 351
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1e-09 Score=110.44 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=64.3
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------c
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~ 105 (661)
++..+++.+. ..+.++++++|.+.+|+ +.+|+||||||||||++.|++.+ |+.|.+.+++.... .
T Consensus 2 i~a~nls~~~----~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 2 IRAENLSYSL----AGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred eeeeeeEEEe----ecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 4444444443 55678999999999999 99999999999999999999998 89999999997432 1
Q ss_pred cccccccCCCC-CCchhhHHHHHH
Q 006094 106 RIIDGNFDDPR-LTDYDTLLENIR 128 (661)
Q Consensus 106 ~~i~~~fq~p~-~~d~~tl~enL~ 128 (661)
+..+...|+.. +|++ ++.+.+.
T Consensus 75 ~~raVlpQ~s~laFpF-tv~eVV~ 97 (259)
T COG4559 75 RHRAVLPQNSSLAFPF-TVQEVVQ 97 (259)
T ss_pred HHhhhcccCcccccce-EHHHHHH
Confidence 23445566543 3443 4555553
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.95 E-value=6.1e-10 Score=109.76 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=70.1
Q ss_pred eccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhH
Q 006094 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTL 123 (661)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl 123 (661)
+.++...+++++ |.+++|+ +++|+||||||||||+++|++++ |+.|.|.+++.. +++.+|++.
T Consensus 8 ~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~------- 71 (177)
T cd03222 8 KRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID------- 71 (177)
T ss_pred EEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC-------
Confidence 334556788885 8999999 99999999999999999999998 889999998752 455555432
Q ss_pred HHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 124 ~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++++..++.-++.++.++.+++.||+...+|.
T Consensus 72 ------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 ------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred ------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 222333444455556666666666787777775
No 353
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.95 E-value=4.7e-10 Score=115.72 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=94.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++...|. .....++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++....
T Consensus 18 ~~i~~~~l~~~~~--~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 18 GEIKIHDLCVRYE--NNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred ceEEEEEEEEEeC--CCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 4577777777663 212468999999999999 99999999999999999999998 78999999986321
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccc-----------cc----c-cc-----ccccccccccccceeeccCccEE
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------AV----Q-VP-----IYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~-----------~I----~-~P-----~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
.+.+++++|++..|+. ++.+++....... .+ . .| ..+......++++..++.-++.+
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 2347889999887763 6666653210000 00 0 00 00111122333445555556666
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-++.+++.||+...+|.
T Consensus 172 ~~~p~llllDEPt~gLD~ 189 (257)
T cd03288 172 VRKSSILIMDEATASIDM 189 (257)
T ss_pred hcCCCEEEEeCCccCCCH
Confidence 666667777777777775
No 354
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.8e-10 Score=119.70 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=94.6
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc-----------ccccccccccCCCCCCchhh
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----------DSSRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~-----------~~~~~i~~~fq~p~~~d~~t 122 (661)
+++|..+..+ +.+|-|+|||||||++++|+++. |+.|.|.++|.. ...+.++|+||+..+|++.+
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 6778888777 99999999999999999999999 999999999962 12356899999999999999
Q ss_pred HHHHHHhhhcccc-------c----cccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 123 LLENIRGLKEGKA-------V----QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 123 l~enL~~L~~g~~-------I----~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.||..-..... + --|..++.+.+.++++.++++..+.++-.+-+++-||+..-+|.
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 9999864322110 0 01345556666777777788777777777777777777766665
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.94 E-value=6.2e-10 Score=129.05 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=100.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
..++++.+++..| +...++++++|.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.++. . ..++
T Consensus 317 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~---~~i~ 385 (635)
T PRK11147 317 KIVFEMENVNYQI----DGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K---LEVA 385 (635)
T ss_pred CceEEEeeeEEEE----CCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C---cEEE
Confidence 3477888877766 34679999999999999 99999999999999999999998 7899998732 1 2467
Q ss_pred cccCCC-CCCchhhHHHHHHhhhccc-----c--c-------cc--cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDP-RLTDYDTLLENIRGLKEGK-----A--V-------QV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p-~~~d~~tl~enL~~L~~g~-----~--I-------~~--P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
|.+|++ .+++..++.+++....... . + .. ...+...+..++++..++.-+..++..+.+++.|
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD 465 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888875 4666678888875421110 0 0 00 0112233445566667777788888888888889
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 466 EPt~~LD~ 473 (635)
T PRK11147 466 EPTNDLDV 473 (635)
T ss_pred CCCCCCCH
Confidence 99998887
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=98.94 E-value=1.1e-10 Score=146.41 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=114.0
Q ss_pred CCCCCCcccccccchhhhcc-------c---CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCC
Q 006094 8 GADSPRRRPGLLRDQVQLVK-------K---KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGA 77 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~-------~---~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGS 77 (661)
...|.+|+..+++.+++... . +....+++++++..|. .+...+|+++||.+++|+ .|||+|+|||
T Consensus 1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~--~~~~~vL~~isl~I~~Ge---kvaIVG~SGS 1273 (1495)
T PLN03232 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYR--PGLPPVLHGLSFFVSPSE---KVGVVGRTGA 1273 (1495)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEEC--CCCCcccccceEEEcCCC---EEEEECCCCC
Confidence 35667788888765443211 0 0112467777766662 233569999999999999 9999999999
Q ss_pred cHHHHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc---------------
Q 006094 78 GKTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK--------------- 134 (661)
Q Consensus 78 GKSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~--------------- 134 (661)
||||+++.|.+++ |..|.|.+||... .++.+++++|+|.+|+ .++++||.....-.
T Consensus 1274 GKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1274 GKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKD 1352 (1495)
T ss_pred CHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHH
Confidence 9999999999998 8999999999742 2346889999999997 48888885321100
Q ss_pred ccc-cc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 135 AVQ-VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 135 ~I~-~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+. .| .+|...+ ..++++.+++.-++.++-++..++.||....+|.
T Consensus 1353 ~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~ 1404 (1495)
T PLN03232 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404 (1495)
T ss_pred HHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 010 11 1222222 2344566666667777777777777887777775
No 357
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.9e-09 Score=105.34 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=113.9
Q ss_pred Cceeeeecccceeee--ccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc----
Q 006094 31 SDRYEIVPIEDTLSF--EKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---- 102 (661)
Q Consensus 31 ~~~iei~~l~~~~s~--~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~---- 102 (661)
..++...++.++|.. ..| ...+++++||.++.|| .+.+-|||||||||++++|-+.+ |+.|.|.+....
T Consensus 2 ~~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vd 78 (235)
T COG4778 2 PTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVD 78 (235)
T ss_pred CceeeeecchhheEeeecCCEEeeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhh
Confidence 346677888888754 223 3479999999999999 99999999999999999999987 888887654431
Q ss_pred ----c-------cccccccccCCCCCCchhhHHHHHH------------------hhhccccccccccccccccccccce
Q 006094 103 ----D-------SSRIIDGNFDDPRLTDYDTLLENIR------------------GLKEGKAVQVPIYDFKSSSRIGYRT 153 (661)
Q Consensus 103 ----~-------~~~~i~~~fq~p~~~d~~tl~enL~------------------~L~~g~~I~~P~yd~~~~~r~~~~~ 153 (661)
. .++.++|+-|.-...+.-...+.++ .|...-.+....++....+.+++++
T Consensus 79 l~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 79 LVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred hhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 0 1123566666544433333333332 2221112333346666677788888
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
+++..++-+|+|-+.++.||+..-+|.+ .-+..-.+.+..+.+|...
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~-------Nr~vVveli~e~Ka~GaAl 205 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDAT-------NRAVVVELIREAKARGAAL 205 (235)
T ss_pred eehhhhhhhhccCceEEecCCccccccc-------chHHHHHHHHHHHhcCceE
Confidence 8999999999999999999999888863 1222334555666677654
No 358
>PLN03211 ABC transporter G-25; Provisional
Probab=98.94 E-value=7.3e-10 Score=129.03 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=95.7
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC--ceEEecCCccc---cccccccccCCCCCCchh
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYND---SSRIIDGNFDDPRLTDYD 121 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~--~g~I~lD~~~~---~~~~i~~~fq~p~~~d~~ 121 (661)
+...+|+++|+.+++|+ ++||+||||||||||+++|++.+ |+ .|.|.++|... ..+.+++++|++..++..
T Consensus 79 ~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 79 QERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcC
Confidence 44679999999999999 99999999999999999999997 53 79999999743 224578999999999889
Q ss_pred hHHHHHHhhhc---ccc---------c-------ccccc------ccccccccccceeeccCccEEEEEehhhhhccccC
Q 006094 122 TLLENIRGLKE---GKA---------V-------QVPIY------DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (661)
Q Consensus 122 tl~enL~~L~~---g~~---------I-------~~P~y------d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (661)
++.|++..... ... + ..... +......++++..++.-+..++-++.+++.||+..
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999864211 000 0 00000 11122344556666767777788888888889888
Q ss_pred CCCE
Q 006094 177 LIDL 180 (661)
Q Consensus 177 llDl 180 (661)
.+|.
T Consensus 236 gLD~ 239 (659)
T PLN03211 236 GLDA 239 (659)
T ss_pred CcCH
Confidence 8886
No 359
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.4e-10 Score=126.33 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=113.7
Q ss_pred CCCCCCcccccccchhhhcccCC------CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKKD------SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~~------~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
|.+..+.+.-+++...+...... .+-+++....-++..+.|. .++++++|++++|+ .++|+|+|||||||
T Consensus 287 g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~---~talvG~SGaGKST 362 (559)
T COG4988 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQ---LTALVGASGAGKST 362 (559)
T ss_pred hhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCc---EEEEECCCCCCHHH
Confidence 34445555566665555433331 2234444223334344444 78999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhcc----------------cccc
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAVQ 137 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I~ 137 (661)
+++.|++++ |..|.|.++|.... ++.+.++.|+|..|+ .++++|+.-.... +.+.
T Consensus 363 Ll~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~ 441 (559)
T COG4988 363 LLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVP 441 (559)
T ss_pred HHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhc
Confidence 999999999 69999999997432 245788999998876 5777777422210 1122
Q ss_pred cc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| ..|...+. .++++.+++.-++.++-.+.+.+.||+...+|.
T Consensus 442 ~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~ 489 (559)
T COG4988 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489 (559)
T ss_pred CCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCH
Confidence 22 23433333 455677778778888877777788898888886
No 360
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.7e-09 Score=110.45 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=73.7
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCccc-
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYND- 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~- 103 (661)
..++++.++.+.|. ...++++++|.+.+|+ +++|+|+||||||||+++|++++ | +.|.|.+++...
T Consensus 14 ~~~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 14 QQKSEVNKLNFYYG----GYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred CceEEEEEEEEEEC----CeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 45778888877763 3469999999999999 99999999999999999999987 3 588999887421
Q ss_pred ----------cccccccccCCCCCCchhhHHHHHHh
Q 006094 104 ----------SSRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 104 ----------~~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
....+++.+|++.+|+. ++.+++..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~ 121 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAY 121 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHh
Confidence 12347889999988875 88888853
No 361
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.93 E-value=7.6e-10 Score=140.72 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=108.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
..+++.++.+.|. .+...++++++|.+.+|+ +++|+|+|||||||++++|++++ |+.|.|.++|....
T Consensus 927 ~~L~I~nLsK~y~--~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~ 1001 (2272)
T TIGR01257 927 PGVCVKNLVKIFE--PSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV 1001 (2272)
T ss_pred ceEEEEeEEEEec--CCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHH
Confidence 3678888888773 234679999999999999 99999999999999999999998 89999999997431
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc--ccc--------------cccc-ccccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~~--------------I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
++.+++++|++.+++..++.+++..... +.. +... ..+...+..++++..++.-+..++.+..
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk 1081 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2357899999999999999999864321 110 0011 1223334455666667777777777888
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 1082 VLLLDEPTSGLDp 1094 (2272)
T TIGR01257 1082 VVVLDEPTSGVDP 1094 (2272)
T ss_pred EEEEECCCcCCCH
Confidence 8888888888886
No 362
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.93 E-value=3.9e-10 Score=128.65 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=96.6
Q ss_pred eeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 33 RYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.+++.+++..|....+ ...+++++||.+++|+ +++|+|||||||||+++.|++.+ |+.|.|.+||....
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 4667777666632111 2358999999999999 99999999999999999999998 89999999997422
Q ss_pred -ccccccccCCCCCCchhhHHHHH---------Hhhhc----ccccc-ccc-cccccccccccceeeccCccEEEEEehh
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENI---------RGLKE----GKAVQ-VPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL---------~~L~~----g~~I~-~P~-yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+..+++++|++.+|+. ++.+|. ....+ ...+. .|. |+. ....++++.+++.-++.++-++..
T Consensus 414 ~~~~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~i 491 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPI 491 (555)
T ss_pred HHhhCcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCE
Confidence 2347788898877653 333332 11111 01111 111 111 123455667777777777888888
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 492 lilDE~ts~LD~ 503 (555)
T TIGR01194 492 LLFDEWAADQDP 503 (555)
T ss_pred EEEeCCccCCCH
Confidence 888888877775
No 363
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.92 E-value=9e-10 Score=123.55 Aligned_cols=143 Identities=11% Similarity=-0.013 Sum_probs=96.8
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYND----- 103 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~~~----- 103 (661)
..++++.++.+.| +...+++++||.+.+|+ ++||+||||||||||+++|++..| ..|.|.++|...
T Consensus 258 ~~~l~~~~l~~~~----~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSY----NDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEE----CCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 4578888887776 33568999999999999 999999999999999999999875 489999988532
Q ss_pred ---cccccccccCCCCCCch--hhHHHHHHhh-hc------c-------------cccccc--ccccccccccccceeec
Q 006094 104 ---SSRIIDGNFDDPRLTDY--DTLLENIRGL-KE------G-------------KAVQVP--IYDFKSSSRIGYRTLEV 156 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~--~tl~enL~~L-~~------g-------------~~I~~P--~yd~~~~~r~~~~~~~v 156 (661)
....+++++|++..+.. .++.+++... .. . +.+..+ ..+......++++..++
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 12346788877644321 2333332210 00 0 001111 12223344555666777
Q ss_pred cCccEEEEEehhhhhccccCCCCE
Q 006094 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (661)
.-+..++.++.+++.||+...+|.
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~ 434 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDP 434 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCH
Confidence 777888888888888999888886
No 364
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.92 E-value=5.8e-10 Score=105.72 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=50.0
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq 113 (661)
..++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++. ..+++.+|
T Consensus 13 ~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~ 70 (144)
T cd03221 13 KLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ 70 (144)
T ss_pred ceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc
Confidence 468999999999999 99999999999999999999998 78999999874 24556555
No 365
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.92 E-value=3.6e-09 Score=106.72 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=68.7
Q ss_pred cEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhh-CCCHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eR-G~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
+-+|+||--+. .-+.+..++|||++++.++|..||.+...... ....+++++.+.+++..+..+-+.|.++..|.++.
T Consensus 121 ~~~V~dGRDiG-TvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~i 199 (222)
T COG0283 121 PGIVADGRDIG-TVVFPDAELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLL 199 (222)
T ss_pred CCEEEecCCCc-ceECCCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEE
Confidence 55888988776 46788999999999999999999988877643 12379999999999999999999999999999987
Q ss_pred CCC
Q 006094 239 NKF 241 (661)
Q Consensus 239 N~~ 241 (661)
++.
T Consensus 200 DTs 202 (222)
T COG0283 200 DTS 202 (222)
T ss_pred ECC
Confidence 654
No 366
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.92 E-value=4.7e-10 Score=128.08 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=99.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
.+++++++..| ..+...++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||....
T Consensus 341 ~i~~~~vsf~y--~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTY--PGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEec--CCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHH
Confidence 46666665544 2223568999999999999 99999999999999999999998 88999999997421
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhcc----cc-------------cc-ccc-ccccc----ccccccceeeccCccE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEG----KA-------------VQ-VPI-YDFKS----SSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g----~~-------------I~-~P~-yd~~~----~~r~~~~~~~v~~a~V 161 (661)
.+.+++++|++.+|+ .++.+|+...... +. +. .|. ++-.. ...++++.+++.-++.
T Consensus 416 ~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 416 RNQVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred HhhceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 345789999999987 6888888642111 00 00 111 12211 1234566666666666
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++=++..++.||+...+|.
T Consensus 495 ll~~~~ililDEptsaLD~ 513 (582)
T PRK11176 495 LLRDSPILILDEATSALDT 513 (582)
T ss_pred HHhCCCEEEEECccccCCH
Confidence 6666777777888777775
No 367
>PLN03130 ABC transporter C family member; Provisional
Probab=98.92 E-value=2.1e-10 Score=144.71 Aligned_cols=166 Identities=13% Similarity=0.117 Sum_probs=113.5
Q ss_pred CCCCCcccccccchhhhc---c--c-----CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCc
Q 006094 9 ADSPRRRPGLLRDQVQLV---K--K-----KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAG 78 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~---~--~-----~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSG 78 (661)
..|.+|+..+++.+++.. . . +....+++++++..|. .+...+|+++||.+++|+ .|||+|+||||
T Consensus 1203 ~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~--~~~~~VL~~is~~I~~Ge---kVaIVGrSGSG 1277 (1622)
T PLN03130 1203 LNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYR--PELPPVLHGLSFEISPSE---KVGIVGRTGAG 1277 (1622)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeC--CCCCceecceeEEEcCCC---EEEEECCCCCC
Confidence 456677777766543321 0 0 0122467777766663 233469999999999999 99999999999
Q ss_pred HHHHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc---------------c
Q 006094 79 KTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK---------------A 135 (661)
Q Consensus 79 KSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---------------~ 135 (661)
|||+++.|.+++ |..|.|.+||... .++.+++++|+|.+|+. ++++||.....-. .
T Consensus 1278 KSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~ 1356 (1622)
T PLN03130 1278 KSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDV 1356 (1622)
T ss_pred HHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999998 8999999999843 23568899999999974 8888885321100 0
Q ss_pred c-ccc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 I-~~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
| ..| .+|...+ ..++++.+++.-++.++-++..++.||....+|.
T Consensus 1357 I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130 1357 IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred HHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 1 112 2332222 2344566666777777777777777888777775
No 368
>PRK13409 putative ATPase RIL; Provisional
Probab=98.91 E-value=1.4e-09 Score=125.19 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=101.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
..++++.++++.| +.+ .+++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++ ..++
T Consensus 338 ~~~l~~~~ls~~~----~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~ 403 (590)
T PRK13409 338 ETLVEYPDLTKKL----GDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKIS 403 (590)
T ss_pred ceEEEEcceEEEE----CCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEE
Confidence 3477888877665 223 4899999999999 99999999999999999999998 788998876 2477
Q ss_pred cccCCCCCCchhhHHHHHHhhhccc-----------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~g~-----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
+.+|++..+...++.+++....... .... ...+...+..++++.+++.-+..++-+..+++.||+...
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 8888877777778888875421110 0000 123444555666777778778888888888888999988
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 484 LD~ 486 (590)
T PRK13409 484 LDV 486 (590)
T ss_pred CCH
Confidence 886
No 369
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.91 E-value=4.7e-10 Score=127.85 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=94.6
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
.+++.+++..|+.. ....+++++||.+++|+ .++|+|+||||||||++.|.+++ |..|.|.+||....
T Consensus 337 ~i~~~~v~f~y~~~-~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPAR-PDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCC-CCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 45666666555321 12468999999999999 99999999999999999999998 78999999996321
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhcc----------------cccc-cc-ccccc----cccccccceeeccCccEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAVQ-VP-IYDFK----SSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I~-~P-~yd~~----~~~r~~~~~~~v~~a~VV 162 (661)
++.+++++|+|..|+ .++.+|+...... +.+. .| .++.. ....++++.+++.-++.+
T Consensus 413 ~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 413 RARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHhceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 245789999998876 5777777532110 0010 01 01111 112344555555555555
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-+...++.||+...+|.
T Consensus 492 ~~~~~ililDEpts~lD~ 509 (576)
T TIGR02204 492 LKDAPILLLDEATSALDA 509 (576)
T ss_pred HhCCCeEEEeCcccccCH
Confidence 555566666777766665
No 370
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.91 E-value=5.1e-10 Score=127.28 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=109.4
Q ss_pred CCCCcccccccchhhhcccC-----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKK-----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~-----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
.+.+|+..+++...+..... ....+++.+++.+|.. ....+++++||.+++|+ .|+|+|+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 302 AAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPG--RDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCC--CCCccccCeeEEecCCC---EEEEECCCCCCHHHHHH
Confidence 44566666665433321111 1124666666665522 23468999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc-----------------cc-cc
Q 006094 85 KVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------------AV-QV 138 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~-----------------~I-~~ 138 (661)
.|.+++ |..|.|.+||... .+..+++++|+|.+|+ .++.+|+.....+. .+ ..
T Consensus 377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~l 455 (571)
T TIGR02203 377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455 (571)
T ss_pred HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 999998 8899999999632 2345789999998886 48888876322100 00 01
Q ss_pred c-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 P-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
| -+|...+ ..++++.+++.-++.++-+...++.||+...+|.
T Consensus 456 p~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~ 502 (571)
T TIGR02203 456 PLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN 502 (571)
T ss_pred cCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1 1222221 2355666677777777777777777787777775
No 371
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.90 E-value=1e-09 Score=124.00 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=88.7
Q ss_pred ceeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
.|+++.++...+ +.+ ...+|++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... +.
T Consensus 20 ~mL~lknL~~~~--~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~ 91 (549)
T PRK13545 20 PFDKLKDLFFRS--KDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IA 91 (549)
T ss_pred ceeEEEEEEEec--CCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EE
Confidence 367777775444 332 2469999999999999 99999999999999999999998 78999999885311 11
Q ss_pred cccCCCCCCchhhHHHHHHhhh--ccc--------------cccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 110 GNFDDPRLTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~--~g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
+ .+..++..++.+++.... .+. .... +..+......++++..++.-+..++.++.+++.|
T Consensus 92 ~---~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 92 I---SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred e---ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 112223334555443210 000 0001 1123333444555666666677777777777778
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 169 EPTsgLD~ 176 (549)
T PRK13545 169 EALSVGDQ 176 (549)
T ss_pred CCcccCCH
Confidence 88887875
No 372
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.90 E-value=4.7e-10 Score=128.79 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=100.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
.+++.+++..|. +...+++++||.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||... .
T Consensus 334 ~i~~~~v~~~y~---~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFA---NSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECC---CCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 366666665552 11357999999999999 99999999999999999999998 8899999998732 1
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhcc---cc-------------c-ccc-ccccc----cccccccceeeccCccEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~~-------------I-~~P-~yd~~----~~~r~~~~~~~v~~a~VV 162 (661)
++.+++++|++..|+ .++.+|+...... +. + ..| .++.. ....++++.+++.-++.+
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 245789999998886 6888888542111 00 0 111 11211 122345666677777777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-++.+++.||+...+|.
T Consensus 487 l~~p~ililDEpts~LD~ 504 (585)
T TIGR01192 487 LKNAPILVLDEATSALDV 504 (585)
T ss_pred hcCCCEEEEECCccCCCH
Confidence 778888888888887775
No 373
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.2e-09 Score=126.96 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=90.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----c---
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S--- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~----~--- 104 (661)
|+.+.++++.| |...++++|||.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.+++... .
T Consensus 1 ~i~i~nls~~~----g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~ 73 (638)
T PRK10636 1 MIVFSSLQIRR----GVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQET 73 (638)
T ss_pred CEEEEEEEEEe----CCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC
Confidence 46677777766 55679999999999999 99999999999999999999987 8899998876310 0
Q ss_pred ----ccccccccCCCCCCchhhHH-----------------------------HHHHhhhcccccccccccccccccccc
Q 006094 105 ----SRIIDGNFDDPRLTDYDTLL-----------------------------ENIRGLKEGKAVQVPIYDFKSSSRIGY 151 (661)
Q Consensus 105 ----~~~i~~~fq~p~~~d~~tl~-----------------------------enL~~L~~g~~I~~P~yd~~~~~r~~~ 151 (661)
...++++++.+..+...... ..+..+..+-.+.....+......+++
T Consensus 74 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 01122232221111100000 000001111011101223344455666
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.-+..++.++.+++.||+...+|.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~ 182 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDL 182 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCH
Confidence 77778888888889999999999999986
No 374
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.3e-09 Score=126.48 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=96.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
..++++.++++.| +...++++++|.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.+++. ..++
T Consensus 310 ~~~l~~~~l~~~y----~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~ig 378 (638)
T PRK10636 310 NPLLKMEKVSAGY----GDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLG 378 (638)
T ss_pred CceEEEEeeEEEe----CCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEE
Confidence 3477888877766 34679999999999999 99999999999999999999998 78999988632 2466
Q ss_pred cccCCC--CCCchhhHHHHHHhhhccc----------ccccc--ccccccccccccceeeccCccEEEEEehhhhhcccc
Q 006094 110 GNFDDP--RLTDYDTLLENIRGLKEGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 110 ~~fq~p--~~~d~~tl~enL~~L~~g~----------~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
|.+|++ .+.+..++.+++..+.... ....+ ..+...+..++++..++.-+..++.++.+++.||+.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 777753 2223334444443211000 01111 122233445666677777888888888888899999
Q ss_pred CCCCE
Q 006094 176 PLIDL 180 (661)
Q Consensus 176 ~llDl 180 (661)
..+|.
T Consensus 459 ~~LD~ 463 (638)
T PRK10636 459 NHLDL 463 (638)
T ss_pred CCCCH
Confidence 98887
No 375
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.88 E-value=8.7e-10 Score=126.31 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=99.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
.+++.+++..|. +...+++++||.+++|+ .|+|+|+||||||||++.|.+++ |..|.|.+||... .
T Consensus 334 ~I~~~~vsf~y~---~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYD---NSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeC---CCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 466666655553 12458999999999999 99999999999999999999998 8899999999732 1
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccc----------------ccc-cc-cccccc----ccccccceeeccCccEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AVQ-VP-IYDFKS----SSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I~-~P-~yd~~~----~~r~~~~~~~v~~a~VV 162 (661)
++.+++++|+|.+|+ .++++|+....... .+. .| .+|-.. ...++++.+++.-++.+
T Consensus 408 r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 408 RRNIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred HhheEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 245889999999986 58888886432110 010 11 122211 12445666667777777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+-++..++.||+...+|.
T Consensus 487 l~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 487 LKDPPILILDEATSALDV 504 (588)
T ss_pred hcCCCEEEEeCCccCCCH
Confidence 777777777888777775
No 376
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.88 E-value=4e-10 Score=108.21 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=95.8
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEecCCccc-----cccccccccCCCCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYND-----SSRIIDGNFDDPRLT 118 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p---~~g~I~lD~~~~-----~~~~i~~~fq~p~~~ 118 (661)
+..-.|-++||++.+|+ |+.|.||||||||||+..+.+.+ + -.|.+.+++... ..+.+++.||++-+|
T Consensus 13 ~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLF 89 (213)
T COG4136 13 PGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLF 89 (213)
T ss_pred CCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccc
Confidence 45567889999999999 99999999999999999999998 3 367888888632 346789999999999
Q ss_pred chhhHHHHHHhhh----cccc-----------c-cccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 119 DYDTLLENIRGLK----EGKA-----------V-QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 119 d~~tl~enL~~L~----~g~~-----------I-~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+...+.+|+.... +|+. + ..-.++....+.++++..+++--++++-++.+++.||++..+|.
T Consensus 90 phlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ 167 (213)
T COG4136 90 PHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167 (213)
T ss_pred cccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHH
Confidence 9999999885321 1211 0 01124444455666666667666777777777777777766664
No 377
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.88 E-value=8.6e-10 Score=116.08 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=89.8
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~ 111 (661)
.+++.+++.. ...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++ .++|.
T Consensus 39 ~l~i~nls~~------~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv 103 (282)
T cd03291 39 NLFFSNLCLV------GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFS 103 (282)
T ss_pred eEEEEEEEEe------cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEE
Confidence 4667666542 2458999999999999 99999999999999999999998 7899999887 36777
Q ss_pred cCCCCCCchhhHHHHHHhhhc-cc----------ccc-----ccc-----cccccccccccceeeccCccEEEEEehhhh
Q 006094 112 FDDPRLTDYDTLLENIRGLKE-GK----------AVQ-----VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 112 fq~p~~~d~~tl~enL~~L~~-g~----------~I~-----~P~-----yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
+|++..++. ++.+++..... .. .+. .|. .+......++++..++.-+..++.++.+++
T Consensus 104 ~q~~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi 182 (282)
T cd03291 104 SQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL 182 (282)
T ss_pred eCccccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 777766653 66666542100 00 000 000 000112334445555666667777777777
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 183 LDEPt~gLD~ 192 (282)
T cd03291 183 LDSPFGYLDV 192 (282)
T ss_pred EECCCccCCH
Confidence 7888877775
No 378
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.87 E-value=1e-09 Score=113.13 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=82.7
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhh
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~ 131 (661)
|+..++.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++. .+++.+|++..+...++.+++....
T Consensus 15 l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 15 LEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred EEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHHHHHHHh
Confidence 334444445788 99999999999999999999998 78999998874 4667777766555566777664321
Q ss_pred cc--c----------ccccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 132 EG--K----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 132 ~g--~----------~I~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.. . ....+ ..+...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 10 0 01111 12333344556666777777778888888888888888886
No 379
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.87 E-value=7.2e-10 Score=129.07 Aligned_cols=138 Identities=13% Similarity=0.088 Sum_probs=98.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.+++..+. +...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.+..++ ...+++
T Consensus 450 ~~i~~~nv~~~~~---~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTP---NGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECC---CCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEE
Confidence 3577777766552 22368999999999999 99999999999999999999998 6778888764 345788
Q ss_pred ccCCCCCCchhhHHHHHHhhh-------cc---cc-------------ccccc-ccc---ccccccccceeeccCccEEE
Q 006094 111 NFDDPRLTDYDTLLENIRGLK-------EG---KA-------------VQVPI-YDF---KSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~-------~g---~~-------------I~~P~-yd~---~~~~r~~~~~~~v~~a~VVI 163 (661)
++|+|.+++. ++.+++.... .+ .. +..|. |+. ..+..++++.+++.-++.++
T Consensus 520 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~ 598 (659)
T TIGR00954 520 VPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY 598 (659)
T ss_pred ECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 8999887775 8888875311 00 00 00000 010 11344556677777778888
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
-++.+++.||+...+|.
T Consensus 599 ~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 599 HKPQFAILDECTSAVSV 615 (659)
T ss_pred cCCCEEEEeCCccCCCH
Confidence 88888888888888886
No 380
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.87 E-value=3.9e-10 Score=141.92 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=114.4
Q ss_pred CCCCCCcccccccchhhhc---c--c-----CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCC
Q 006094 8 GADSPRRRPGLLRDQVQLV---K--K-----KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGA 77 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~---~--~-----~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGS 77 (661)
...|.+|+.++++.+.+.. . . +....+++++++..|.. +...+|+++||.+++|+ .|||+|+|||
T Consensus 1249 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~--~~~~vL~~is~~I~~Ge---kiaIVGrTGs 1323 (1522)
T TIGR00957 1249 NIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRE--DLDLVLRHINVTIHGGE---KVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCC--CCcccccceeEEEcCCC---EEEEECCCCC
Confidence 3456778888876543321 0 0 11234677777666632 22469999999999999 9999999999
Q ss_pred cHHHHHHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc---------------c
Q 006094 78 GKTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG---------------K 134 (661)
Q Consensus 78 GKSTLak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------------~ 134 (661)
||||+++.|.+++ |..|.|.+||... .++.+++++|+|.+|+ .++++||.....- .
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHH
Confidence 9999999999998 8899999999843 2356889999999997 4888888532110 0
Q ss_pred cc-ccc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 135 AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 135 ~I-~~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| ..| .+|...+ ..++++.+.+.-++.++-++..++.||....+|.
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 01 011 2333322 2344566667777777777777777887777775
No 381
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.7e-10 Score=108.80 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=93.4
Q ss_pred ceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc------cccccccC
Q 006094 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFD 113 (661)
Q Consensus 41 ~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~------~~i~~~fq 113 (661)
+.++..++.+.++.+++|.+.+|+ .+-|.||||||||||+++|++++ |+.|.|.+++..... +..-|.-.
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhc
Confidence 445667788899999999999999 99999999999999999999999 999999999764321 12233334
Q ss_pred CCCCCchhhHHHHHHhhhc--c--cccccc----------ccccccccccccceeeccCccEEEEEehhhhhccccCCCC
Q 006094 114 DPRLTDYDTLLENIRGLKE--G--KAVQVP----------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (661)
Q Consensus 114 ~p~~~d~~tl~enL~~L~~--g--~~I~~P----------~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (661)
.+..-...++.|||.++.. + .....+ .-|-..+..+.+++.+++.++.++--.++.+.||+...+|
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 4566667788888877654 1 111100 0111122334445556666666666666666677666666
Q ss_pred E
Q 006094 180 L 180 (661)
Q Consensus 180 l 180 (661)
.
T Consensus 163 k 163 (209)
T COG4133 163 K 163 (209)
T ss_pred H
Confidence 4
No 382
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.86 E-value=3e-09 Score=132.86 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=111.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCccc---cc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND---SS 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~---~~ 105 (661)
+++..++...+....+...+|++||+.+++|+ ++||+||||||||||++.|++..+ ..|.|.+||... .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 45667776666433445689999999999999 999999999999999999999973 569999999743 23
Q ss_pred cccccccCCCCCCchhhHHHHHHhh---hccccc----------------cc-cccccccc----cccccceeeccCccE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGL---KEGKAV----------------QV-PIYDFKSS----SRIGYRTLEVPSSRI 161 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L---~~g~~I----------------~~-P~yd~~~~----~r~~~~~~~v~~a~V 161 (661)
+.+++++|++..++..++.+++... +....+ .. +..+...+ ..++++..++..+..
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 4578999998888888999998642 111000 00 01122222 233445555555666
Q ss_pred EEEEeh-hhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHH
Q 006094 162 VIIEGI-YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (661)
Q Consensus 162 VIVEGi-laL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~ 212 (661)
++.++. +++.||+...+|.. ....+.++.+.+.+.|.+.--++|
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~-------~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQ-------TAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHH-------HHHHHHHHHHHHHHcCCEEEEEec
Confidence 667773 67778888888862 222333444444445655433333
No 383
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.85 E-value=1.2e-09 Score=110.01 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=75.2
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEe-cCCccccccccccccCCCCCCchhhHHHHHHh
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~-lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|. +++.... ..+.+..++..++.+++..
T Consensus 2 vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~~ 72 (213)
T PRK15177 2 VLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENARM 72 (213)
T ss_pred eeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHHH
Confidence 6899999999999 99999999999999999999998 7888886 6654211 1123456666677777754
Q ss_pred hhc--ccc---c--------ccc-ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 130 LKE--GKA---V--------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 130 L~~--g~~---I--------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
... +.. + ..+ .++...+..++++..++.-+..++.++.+++.||+...+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 73 MASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 321 100 0 000 11122223333444455555556666666666666554453
No 384
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=6.4e-09 Score=107.82 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=65.5
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEecCCcccc---------cccccccc
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------SRIIDGNF 112 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-----~~g~I~lD~~~~~---------~~~i~~~f 112 (661)
+...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|.... .+.++++|
T Consensus 19 ~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 95 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVF 95 (261)
T ss_pred CCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEe
Confidence 55679999999999999 99999999999999999999998 4 5899999997421 23478899
Q ss_pred CCCCCCchhhHHHHHHh
Q 006094 113 DDPRLTDYDTLLENIRG 129 (661)
Q Consensus 113 q~p~~~d~~tl~enL~~ 129 (661)
|++..|+ .++.+++..
T Consensus 96 q~~~~~~-~tv~enl~~ 111 (261)
T PRK14263 96 QQPNPFS-MSIFDNVAF 111 (261)
T ss_pred cCCcccc-ccHHHHHHH
Confidence 9988874 778888753
No 385
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=2.8e-09 Score=101.58 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=46.2
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~ 102 (661)
..++++++|.+.+|+ +++|+|+||||||||++.|++.+ +..|.+.+++..
T Consensus 12 ~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~ 62 (157)
T cd00267 12 RTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD 62 (157)
T ss_pred eeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE
Confidence 368999999999999 99999999999999999999998 788999998863
No 386
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.83 E-value=2.9e-09 Score=103.38 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=108.5
Q ss_pred eeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc-------------ccccccc
Q 006094 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-------------DSSRIID 109 (661)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~-------------~~~~~i~ 109 (661)
.+-+|...+|-+|+|..+.|+ .+.+.||||+|||||++.|.-+. |.+|.+.+-+.+ ..++.++
T Consensus 9 n~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred ccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 344577889999999999999 99999999999999999987765 888988876641 1124578
Q ss_pred cccCCCCCCchhhHHHHHHhhh---cc--------------ccccc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 110 GNFDDPRLTDYDTLLENIRGLK---EG--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~---~g--------------~~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
++||.+.++++.++.+|+-..- .| +.... +.-|...-..+++++.+++.++.+.+++..++.
T Consensus 86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEee
Confidence 9999999999999999884210 00 01111 222333444567788888888889999888888
Q ss_pred ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCC
Q 006094 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (661)
Q Consensus 172 deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s 206 (661)
|++...+|. +-+.-+-.|.+.....|.+
T Consensus 166 deptaaldp-------eitaqvv~iikel~~tgit 193 (242)
T COG4161 166 DEPTAALDP-------EITAQIVSIIKELAETGIT 193 (242)
T ss_pred cCcccccCH-------HHHHHHHHHHHHHHhcCce
Confidence 888887775 2233333444444444543
No 387
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-09 Score=121.79 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=116.6
Q ss_pred CCCCCCcccccccchhhhccc-C---C-CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKK-K---D-SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~-~---~-~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
-..|+.|+..+.+..++-... . . ...+++.+++..| +.....+|+++||.+++|| -|+|+|+|||||||+
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y--~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTl 380 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTY--PGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTL 380 (573)
T ss_pred HHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeec--CCCccchhhccceeecCCC---eEEEECCCCCCHHHH
Confidence 346778888887765544333 1 0 1145666655444 4445679999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhccc----------c------c-c
Q 006094 83 TEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------A------V-Q 137 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------~------I-~ 137 (661)
++.|.+.+ |+.|.|.+.|... .++.+++..|.+.+|+ .++++|+.--+..- . + .
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999998 8999999999632 1234666778777775 57777775322210 0 0 1
Q ss_pred cc-----ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-----~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| ..+..-...++++..+++-+++++-+.++.+.||+.+.+|.
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 11 12222233456777888888999999999999999998886
No 388
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.83 E-value=1.6e-09 Score=126.71 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=108.6
Q ss_pred CCCCcccccccchhhhccc------CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKK------KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~------~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
.+.+|+..+++...+.... .....+++.+++..|. .+...+++++||.+++|+ .++|+|+||||||||+
T Consensus 426 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 426 IALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYA--PDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLT 500 (694)
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcC--CCCccccccceEEECCCC---EEEEECCCCCCHHHHH
Confidence 3456666666543332111 0122466666655542 233468999999999999 9999999999999999
Q ss_pred HHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc----------------cc-cc
Q 006094 84 EKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AV-QV 138 (661)
Q Consensus 84 k~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~I-~~ 138 (661)
+.|++++ |..|.|.+||.... ++.+++++|++.+|+ .++.+|+....... .+ ..
T Consensus 501 ~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 579 (694)
T TIGR01846 501 KLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL 579 (694)
T ss_pred HHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 9999998 89999999997422 245789999998887 58888885321100 00 01
Q ss_pred c-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 139 P-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 139 P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
| .++-.. ...++++.+++.-++.++-++..++.||+...+|.
T Consensus 580 p~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~ 626 (694)
T TIGR01846 580 PQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626 (694)
T ss_pred cCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 1 122211 22344566666666667777777777787777775
No 389
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.82 E-value=2.8e-09 Score=121.03 Aligned_cols=137 Identities=19% Similarity=0.175 Sum_probs=97.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~ 111 (661)
++.+.+++..| |...++++++|.+.+|+ .|||+|+||||||||+++|++.+ |+.|.|..+.- ..+++.
T Consensus 3 ~i~~~~ls~~~----g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l 71 (530)
T COG0488 3 MITLENLSLAY----GDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYL 71 (530)
T ss_pred eEEEeeeEEee----CCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEe
Confidence 55666666655 77889999999999999 99999999999999999999998 88998887753 135566
Q ss_pred cCCCCCCchhhHHHHHHhh--------------h---------------------cc-----------cccccccccccc
Q 006094 112 FDDPRLTDYDTLLENIRGL--------------K---------------------EG-----------KAVQVPIYDFKS 145 (661)
Q Consensus 112 fq~p~~~d~~tl~enL~~L--------------~---------------------~g-----------~~I~~P~yd~~~ 145 (661)
.|++...+..++.+.+..- . .+ ..+..+..+...
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~ 151 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPV 151 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCch
Confidence 6666665544444332110 0 00 001112224445
Q ss_pred ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 146 ~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
...++++..++.-+++++-++-+++.||+.+.+|+
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~ 186 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 55667777788888888989988899999999995
No 390
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=3.8e-09 Score=103.69 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
+.+.+..+++.|.-.+| .++|||.+.+|+ ++||+|.||||||||+++|++.+ |+.|.+..+....
T Consensus 5 PLL~V~~lsk~Yg~~~g----c~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 5 PLLSVSGLSKLYGPGKG----CRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred cceeehhhhhhhCCCcC----ccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 46677788888855544 799999999999 99999999999999999999998 8888887665311
Q ss_pred ---c------ccccccccCCCCC-Cch-----hhHHH-----------HH----Hhhhccccccccccccccccccccce
Q 006094 104 ---S------SRIIDGNFDDPRL-TDY-----DTLLE-----------NI----RGLKEGKAVQVPIYDFKSSSRIGYRT 153 (661)
Q Consensus 104 ---~------~~~i~~~fq~p~~-~d~-----~tl~e-----------nL----~~L~~g~~I~~P~yd~~~~~r~~~~~ 153 (661)
. +...+++.|+|.- +.. ..+.| ++ ....+.-.|....+|..+...+++..
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 1 1235677777642 100 00111 11 11222223433456666666666666
Q ss_pred eeccCccEEEEEehhhhhccccCCCCEE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlk 181 (661)
.++..++.++-.+-+.|-+|+...+|..
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVS 185 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchh
Confidence 6677778888888888888888888863
No 391
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.81 E-value=3.2e-09 Score=107.35 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=80.3
Q ss_pred ceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--cccccccccCCCCCCc--hhhHHHHHHhhhc
Q 006094 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (661)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i~~~fq~p~~~d--~~tl~enL~~L~~ 132 (661)
|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+||... ..+.+++.+|++..+. ..++.+++.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4678899 99999999999999999999998 7899999999742 2245788898876532 2456666532100
Q ss_pred --------cc-----c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 133 --------GK-----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 133 --------g~-----~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.. . +.. +..+......++++..++.-++.++.++.+++.||+...+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 00 0 000 111222233344455566667777778888888888888886
No 392
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=2.5e-09 Score=110.95 Aligned_cols=125 Identities=11% Similarity=0.180 Sum_probs=79.6
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEe-----------cCCccccc---------cccc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS---------RIID 109 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~-----------lD~~~~~~---------~~i~ 109 (661)
.+++++++ +.+|+ +++|+|+||||||||+++|++++ |+.|.|. +++..... ..+.
T Consensus 15 ~~l~~i~~-i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 15 FKLHRLPV-PREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred hhhhcCCC-CCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 58999994 99999 99999999999999999999999 8899985 56653210 1134
Q ss_pred cccCCCCCCchhhHHHHHHhhhccc-----------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~g~-----------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
+.++++..++. ++.+++....... .... ...+......++++..++..+..++.++.+++.||+...
T Consensus 91 ~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~ 169 (255)
T cd03236 91 VKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSY 169 (255)
T ss_pred eecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 55676665552 3433332211000 0001 112222333444555566666667777777777888888
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 170 LD~ 172 (255)
T cd03236 170 LDI 172 (255)
T ss_pred CCH
Confidence 876
No 393
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.78 E-value=3.2e-09 Score=104.59 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=67.2
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc--ccccccccCCCCCCchhhHHHH
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~--~~~i~~~fq~p~~~d~~tl~en 126 (661)
...+++++||.+++|+ +++|+||||||||||++++. +..|.+.+++.... +..+.+.+| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 4578999999999999 99999999999999999885 35677776654211 112334333 223
Q ss_pred HHhhhccccccccccccccccccccceeeccCccEEEEE--ehhhhhccccCCCCE
Q 006094 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIE--GIYALSEKLRPLIDL 180 (661)
Q Consensus 127 L~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVE--GilaL~deLr~llDl 180 (661)
+..+.-+.. ..+......++++..++.-+..++.+ +.+++.||+...+|.
T Consensus 71 l~~~~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 71 LIDVGLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred HHHcCCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 332211110 11222233333444455555555555 555666777777775
No 394
>PRK08118 topology modulation protein; Reviewed
Probab=98.78 E-value=5.5e-08 Score=94.79 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=69.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~ 147 (661)
.|.|+|++||||||+++.|+..+ +...+++|...... + +. ..+.+.+.+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~---~--w~---~~~~~~~~~~~~~~~---------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKP---N--WE---GVPKEEQITVQNELV---------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhccc---C--Cc---CCCHHHHHHHHHHHh----------------
Confidence 68999999999999999999987 34567777543211 0 11 011111111111110
Q ss_pred ccccceeeccCccEEEEEehhhh-hccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 148 RIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 148 r~~~~~~~v~~a~VVIVEGilaL-~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
..+-+|+||.|.- .+...+.+|..||+++|.++++.|.+.|....+|.+.
T Consensus 58 ----------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 58 ----------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred ----------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 1134788998873 2444567999999999999999999999887666543
No 395
>PRK07261 topology modulation protein; Provisional
Probab=98.77 E-value=1.3e-08 Score=99.39 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~ 147 (661)
.|+|+|++|||||||++.|+..+ +...++.|...... .++. .+.+.+...+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~-----~~~~---~~~~~~~~~~~~~----------------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQP-----NWQE---RDDDDMIADISNF----------------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEecc-----cccc---CCHHHHHHHHHHH-----------------
Confidence 58999999999999999999886 34467777653211 1111 1122222222211
Q ss_pred ccccceeeccCccEEEEEehhhh-h-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHH
Q 006094 148 RIGYRTLEVPSSRIVIIEGIYAL-S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (661)
Q Consensus 148 r~~~~~~~v~~a~VVIVEGilaL-~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~ 214 (661)
+.... +|+||.|.- . +...+.+|..||++.|..+++.|.+.|.+..+|++.+++..+.
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~ 115 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENC 115 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCC
Confidence 11223 899999875 2 4555689999999999999999999999988888765554443
No 396
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.77 E-value=7.6e-09 Score=93.57 Aligned_cols=117 Identities=22% Similarity=0.368 Sum_probs=70.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCch-hhHHHHHHhhhccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDY-DTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~-~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
+|+|+|++||||||+++.|++.+ +...+++|.+....... .++.+. ... ....+.+.......
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~~~------------ 64 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREPGWI--ERDDDE-REYIDADIDLLDDILEQL------------ 64 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCGTHC--HGCTTC-CHHHHHHHHHHHHHHHHH------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEecccc--ccCcch-hhHHHHHHHHHHHHHHhh------------
Confidence 68999999999999999999987 46678888832111111 111111 111 11111111111000
Q ss_pred cccccceeeccCccEEEEEehhhhhcc-ccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~de-Lr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
........+|+||.+....+ .....|..||++++.+.++.+++.|...++|++.
T Consensus 65 -------~~~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 65 -------QNKPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp -------HETTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred -------hccCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 00234567999996652112 2234578999999998889999999999888763
No 397
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.76 E-value=3.1e-09 Score=98.16 Aligned_cols=71 Identities=25% Similarity=0.397 Sum_probs=59.0
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~ 124 (661)
|++++|.+.+|+ +++|+|+||||||||++.|++.. |..|.|.+++.... ...+++.++++..++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 99999999999999999999998 78999999986322 23467788887777766555
Q ss_pred HH
Q 006094 125 EN 126 (661)
Q Consensus 125 en 126 (661)
++
T Consensus 78 ~~ 79 (137)
T PF00005_consen 78 EN 79 (137)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 398
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.76 E-value=6.7e-09 Score=120.17 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=94.4
Q ss_pred cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCCcccc----ccccccccCCCCCC
Q 006094 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLT 118 (661)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~~~~~----~~~i~~~fq~p~~~ 118 (661)
++...+|+++++.+++|+ +++|+||||||||||++.|++.. ++ .|.|.++|.... ++.+++++|++..+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cCccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 345679999999999999 99999999999999999999987 43 689999997432 34578999999999
Q ss_pred chhhHHHHHHhhhc---ccc----------------ccc-cccccccc------cccccceeeccCccEEEEEehhhhhc
Q 006094 119 DYDTLLENIRGLKE---GKA----------------VQV-PIYDFKSS------SRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 119 d~~tl~enL~~L~~---g~~----------------I~~-P~yd~~~~------~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
+..++.|++..... ... ... ...+...+ ..++++..++.-+..++-++.+++.|
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 99999999863211 000 000 01122222 23445556666666677777777778
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 192 EPtsgLD~ 199 (617)
T TIGR00955 192 EPTSGLDS 199 (617)
T ss_pred CCCcchhH
Confidence 88887775
No 399
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.76 E-value=4e-09 Score=122.33 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=54.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCC
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~ 100 (661)
|+++.+++++| +...+++++||.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.+++
T Consensus 3 ~l~i~~ls~~~----~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSF----SDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEe----CCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 67788877776 34579999999999999 99999999999999999999998 7899998876
No 400
>PRK01184 hypothetical protein; Provisional
Probab=98.73 E-value=2.1e-08 Score=97.90 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=81.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~ 145 (661)
+++|+|+|++||||||+++. +..+ +...++.++.-.... ..... +... ..+.+....+... .....+....
T Consensus 1 ~~~i~l~G~~GsGKsT~a~~-~~~~-g~~~i~~~d~lr~~~-~~~~~--~~~~--~~~g~~~~~~~~~--~~~~~~~~~~ 71 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSKI-AREM-GIPVVVMGDVIREEV-KKRGL--EPTD--ENIGKVAIDLRKE--LGMDAVAKRT 71 (184)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHc-CCcEEEhhHHHHHHH-HHcCC--CCCc--HHHHHHHHHHHHH--HChHHHHHHH
Confidence 45899999999999999984 4444 455777754311100 00001 1000 0111111111100 0000000000
Q ss_pred ccccccceeeccCccEEEEEehhhhh--ccccCCCC---EEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhccc
Q 006094 146 SSRIGYRTLEVPSSRIVIIEGIYALS--EKLRPLID---LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (661)
Q Consensus 146 ~~r~~~~~~~v~~a~VVIVEGilaL~--deLr~llD---lkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P 220 (661)
+... ......++|++|..... +.+++.++ ..|||++|.+++..|...|+....+.+.+++.++...+. |
T Consensus 72 ~~~i-----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~ 145 (184)
T PRK01184 72 VPKI-----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-S 145 (184)
T ss_pred HHHH-----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-c
Confidence 1111 11245789999974322 23444445 899999999998777655532112345666666654332 1
Q ss_pred chhhccCCCCCCceEEEECCCCC
Q 006094 221 MYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 221 ~~~~fIeP~k~~ADIII~N~~~p 243 (661)
. -+.+....||++|.|++++
T Consensus 146 ~---~~~~~~~~ad~vI~N~~~~ 165 (184)
T PRK01184 146 W---GIGEVIALADYMIVNDSTL 165 (184)
T ss_pred c---CHHHHHHhcCEEEeCCCCH
Confidence 1 1233457899999998754
No 401
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.73 E-value=8.5e-08 Score=112.89 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=66.5
Q ss_pred EEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
-+|+||-.+.. -+.+..|+|||++|+.++|..||..++.. .+.+++++.+..++..+. +.+.|.+...|.++.|+
T Consensus 139 ~~v~eGRdigt-vv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idt 213 (712)
T PRK09518 139 GIVAEGRDITT-VVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDN 213 (712)
T ss_pred cEEEecCccce-EEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEEC
Confidence 58999988874 56778999999999999999999888753 789999999999999999 99999988888887765
Q ss_pred C
Q 006094 241 F 241 (661)
Q Consensus 241 ~ 241 (661)
.
T Consensus 214 s 214 (712)
T PRK09518 214 S 214 (712)
T ss_pred C
Confidence 4
No 402
>PLN03073 ABC transporter F family; Provisional
Probab=98.72 E-value=1e-08 Score=120.50 Aligned_cols=137 Identities=13% Similarity=0.047 Sum_probs=91.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.+++..|. +...+++++||.+.+|+ +|||+||||||||||+++|++++ |..|.|.+++. ..++|
T Consensus 507 ~~L~~~~ls~~y~---~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----~~igy 576 (718)
T PLN03073 507 PIISFSDASFGYP---GGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----VRMAV 576 (718)
T ss_pred ceEEEEeeEEEeC---CCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----eeEEE
Confidence 4777877776652 23468999999999999 99999999999999999999998 78899987642 24667
Q ss_pred ccCCCCCCchhhHHHH----------------HHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 111 NFDDPRLTDYDTLLEN----------------IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 111 ~fq~p~~~d~~tl~en----------------L~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
.+|++.. ...+.++ +..+...-.+.....+......++++..++.-+..++.++.+++.||+
T Consensus 577 v~Q~~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 577 FSQHHVD--GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred Eeccccc--cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7776411 1111111 000000000100012233344556667777778888888888888999
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 655 T~~LD~ 660 (718)
T PLN03073 655 SNHLDL 660 (718)
T ss_pred CCCCCH
Confidence 998886
No 403
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.71 E-value=7.5e-09 Score=104.55 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=74.9
Q ss_pred eeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc-----
Q 006094 33 RYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----- 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~----- 105 (661)
|+++.++.+.|..+.. ...+++++++.+.+++ +|.|+|.|||||||+++.|++.+ |+.|.|.+|+.+..+
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH
Confidence 4556666666532211 3578999999999999 99999999999999999999998 899999999985322
Q ss_pred --cccccccCCCC--CCchhhHHHHHHh
Q 006094 106 --RIIDGNFDDPR--LTDYDTLLENIRG 129 (661)
Q Consensus 106 --~~i~~~fq~p~--~~d~~tl~enL~~ 129 (661)
..+.-+||+|. .++..++.||+.-
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~l 105 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLAL 105 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHH
Confidence 23567899984 5888999999863
No 404
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.70 E-value=4.3e-09 Score=112.70 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=80.4
Q ss_pred EECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c
Q 006094 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A 135 (661)
Q Consensus 71 I~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~ 135 (661)
|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||++.+|+..++.+|+..... +. .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999998 78999999986421 2457899999999998999999864211 10 0
Q ss_pred -------ccc-cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 -------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 -------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
... +..+...+..++++..++.-++.++.++.+++.||+...+|.
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~ 133 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDK 133 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 000 112333344555666777777778888888888888888886
No 405
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.69 E-value=2.7e-08 Score=101.44 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=60.1
Q ss_pred ccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCCHHHHHHHHHhhcccchhhccCCCCCCceEEE
Q 006094 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII 237 (661)
..-+|++|-.+.. .+.+..|++|||++|.+.|..||..+.... .+.+.+++.+.+.++.+-...+++.|.+..+|.++
T Consensus 122 ~~~~Vi~GR~~~~-~vl~~a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~ 200 (225)
T PRK00023 122 EPGLVMDGRDIGT-VVFPDAELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALL 200 (225)
T ss_pred CCCEEEEecChhe-EEeCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEE
Confidence 3458999986443 355558999999999999877776665432 25678888888888877777778899888888555
Q ss_pred ECCC
Q 006094 238 INKF 241 (661)
Q Consensus 238 ~N~~ 241 (661)
.|+.
T Consensus 201 IDTs 204 (225)
T PRK00023 201 LDTS 204 (225)
T ss_pred EECC
Confidence 4443
No 406
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.67 E-value=5.8e-08 Score=113.37 Aligned_cols=168 Identities=13% Similarity=0.146 Sum_probs=105.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhh----------cccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLK----------EGKA 135 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~----------~g~~ 135 (661)
..+|+|.||+||||||+++.|+..+ +...++.+.++..-.... .-..-+..+...+.+.+..+. .++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEAL-GYHYLDSGALYRLTALAA-LRAGVALDDEAAIAALARGLPVRFEGDRIWLGGED 519 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHh-CCeEecHHHhhhHHHHHH-HHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeE
Confidence 4589999999999999999999998 333455555432210000 000011112222333222111 1111
Q ss_pred cc-----------------ccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHH
Q 006094 136 VQ-----------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (661)
Q Consensus 136 I~-----------------~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~R 198 (661)
+. .|.++..... .+......+-+|+||-.+.. .+.+..|+|||++++.++|..||..+
T Consensus 520 ~~~~i~~~~v~~~~s~~a~~~~vr~~l~~----~qr~~~~~~~~v~eGRdigt-vv~p~a~~kifl~a~~~~Ra~Rr~~~ 594 (661)
T PRK11860 520 VTDAIRTEAAGMGASRVSALPAVRAALLA----LQRSFRRLPGLVADGRDMGT-VIFPDAALKVFLTASAEARAERRYKQ 594 (661)
T ss_pred chhhhCcHHHHHHHHHHhCCHHHHHHHHH----HHHHHhhCCCEEEECCCCcc-EECCCCCeEEEEECChhHHHHHHHHH
Confidence 11 1111111110 11112233358999988874 57788999999999999999999877
Q ss_pred HHHhhC--CCHHHHHHHHHhhcccchhhccCCCCCCceEEEECCC
Q 006094 199 DIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 199 Di~eRG--~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
... +| .+.+++.+++.+++..+..+.+.|.+...|.++.|+.
T Consensus 595 ~~~-~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts 638 (661)
T PRK11860 595 LIS-KGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNS 638 (661)
T ss_pred HHh-CCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECC
Confidence 653 34 4899999999999999999999999998888877654
No 407
>PRK06217 hypothetical protein; Validated
Probab=98.67 E-value=7.8e-08 Score=94.36 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=67.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
..|.|+|++||||||+++.|+..+ +...+++|.+........ +.... +.+.....+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~~--~~~~~--~~~~~~~~~~~~---------------- 60 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDPP--FTTKR--PPEERLRLLLED---------------- 60 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCCC--ccccC--CHHHHHHHHHHH----------------
Confidence 369999999999999999999998 455788887643221100 10000 001111111000
Q ss_pred cccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHH
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~ 201 (661)
+...+-+|+||.+... ..+...+|..|||++|.++++.|...|...
T Consensus 61 ---------~~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 61 ---------LRPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ---------HhcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 0112347888988865 456788999999999999999888888754
No 408
>PRK13409 putative ATPase RIL; Provisional
Probab=98.66 E-value=1e-08 Score=118.08 Aligned_cols=143 Identities=14% Similarity=0.174 Sum_probs=93.4
Q ss_pred eeeeecccce----eeeccCc-eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEe---------
Q 006094 33 RYEIVPIEDT----LSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT--------- 97 (661)
Q Consensus 33 ~iei~~l~~~----~s~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~--------- 97 (661)
.+.|.++++. +.+.+|. ..+|++++ .+.+|+ ++||+||||||||||+++|++.+ |+.|.|.
T Consensus 65 a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~ 140 (590)
T PRK13409 65 AISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL 140 (590)
T ss_pred eEEEeeCchhhccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHH
Confidence 4566666554 4445554 35899999 899999 99999999999999999999998 8899987
Q ss_pred --cCCcccc---------cccccc----ccCCCCCCchhhHHHHHHhhhccc-------ccccc-cccccccccccccee
Q 006094 98 --MDNYNDS---------SRIIDG----NFDDPRLTDYDTLLENIRGLKEGK-------AVQVP-IYDFKSSSRIGYRTL 154 (661)
Q Consensus 98 --lD~~~~~---------~~~i~~----~fq~p~~~d~~tl~enL~~L~~g~-------~I~~P-~yd~~~~~r~~~~~~ 154 (661)
++|.... ...+.+ .++.|.+|.. ++.+++....... .+... ..+......++++..
T Consensus 141 ~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG-KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 6664210 111223 3333433322 5555553211000 01111 234445556666777
Q ss_pred eccCccEEEEEehhhhhccccCCCCE
Q 006094 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++.-+..++.++.+++.||+...+|.
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 77777888888888888999988886
No 409
>PTZ00243 ABC transporter; Provisional
Probab=98.66 E-value=2.4e-08 Score=126.06 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=75.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
.+++++++..|. .+...+|++|||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||... .
T Consensus 1308 ~I~f~nVsf~Y~--~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYR--EGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeC--CCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 466666655552 233469999999999999 99999999999999999999998 8899999999743 2
Q ss_pred ccccccccCCCCCCchhhHHHHHHh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
++.+++++|+|.+|+. ++++||..
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp 1406 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDP 1406 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCc
Confidence 3568999999999985 89988853
No 410
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.66 E-value=1.5e-07 Score=93.35 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=86.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccc-----ccccccCCCCCCchhhHHHHHHhhhcccccccc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~-----~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P 139 (661)
++++|.|+||||||||||++.|....|.. .....-....++ ...|.|- ..+.+ -..+..|..+++-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fv-----s~~~F---~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFL-----TIEEF---KKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeC-----CHHHH---HHHHHcCCeEEEE
Confidence 35699999999999999999999876542 122221111111 1223332 22222 3334556667665
Q ss_pred cccccc-ccccccceeeccCccEEEEEehhhhhccccCCC-C--EEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 140 IYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D--LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 140 ~yd~~~-~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll-D--lkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
.|.... +.....-...+...+++|++.-.-....++..+ | +.|||.+|....+.+|+.+ +.+.+.+++..++.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~---R~~~s~e~i~~Rl~ 150 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH---RGTDSEESIEKRIE 150 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 543222 221111112245567778774333333333333 3 6899999864444444332 22346777777775
Q ss_pred hhcccchhhccCCCCCCceEEEECCCCC
Q 006094 216 ETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
.. .+.. .....+|+||.|+ +.
T Consensus 151 ~~-~~e~-----~~~~~~D~vI~N~-dl 171 (186)
T PRK14737 151 NG-IIEL-----DEANEFDYKIIND-DL 171 (186)
T ss_pred HH-HHHH-----hhhccCCEEEECc-CH
Confidence 43 2221 2357899999998 44
No 411
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=1.3e-08 Score=98.74 Aligned_cols=146 Identities=17% Similarity=0.270 Sum_probs=93.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCC-ccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN-YNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~-~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
+|.|.|++||||||+++.|++.++ --.++... |....+..++.+.+ +..+. -+.|.+|....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A~e~gmsl~e------------f~~~A----E~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMARERGMSLEE------------FSRYA----EEDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-CceeeccHHHHHHHHHcCCCHHH------------HHHHH----hcCchhhHHHH
Confidence 699999999999999999999972 22333222 12222222222211 11111 23456666655
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhcc
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fI 226 (661)
.+.. .....+-+|+||-++.+= .++..|++||+.+|..+|..|-..|+ |.+++++......+.+...++|-
T Consensus 65 ~rq~----e~a~~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RRQK----ELAKEGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HHHH----HHHHcCCeEEhhhhHHHH-hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4432 233366789999999862 12689999999999988766655554 88999998888777666666653
Q ss_pred C------CCCCCceEEEEC
Q 006094 227 E------PDLQTAHIKIIN 239 (661)
Q Consensus 227 e------P~k~~ADIII~N 239 (661)
+ -.....|+||+-
T Consensus 136 ~~YgIDidDlSiyDLVinT 154 (179)
T COG1102 136 KIYGIDIDDLSIYDLVINT 154 (179)
T ss_pred HHhCCCCccceeeEEEEec
Confidence 2 135667888753
No 412
>PLN03140 ABC transporter G family member; Provisional
Probab=98.64 E-value=4e-08 Score=123.17 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=68.4
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCCccc----cccccccccCCCCCCch
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYND----SSRIIDGNFDDPRLTDY 120 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~~~~----~~~~i~~~fq~p~~~d~ 120 (661)
.+.+|+++|+.+++|+ +++|.||||||||||+++|++.+ |+ .|.|.++|... .++.++|++|++..++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4579999999999999 99999999999999999999998 65 89999999742 23457899999989999
Q ss_pred hhHHHHHHh
Q 006094 121 DTLLENIRG 129 (661)
Q Consensus 121 ~tl~enL~~ 129 (661)
.++.|++..
T Consensus 254 lTV~EtL~f 262 (1470)
T PLN03140 254 MTVKETLDF 262 (1470)
T ss_pred CcHHHHHHH
Confidence 999999864
No 413
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.60 E-value=1.8e-08 Score=104.84 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=51.0
Q ss_pred eccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc
Q 006094 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (661)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~ 104 (661)
+.+..+.++++|||.+++|+ ++|.+|+|||||||++|+|.|++ |..|.+...|+.+.
T Consensus 32 ~k~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf 89 (325)
T COG4586 32 RKERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPF 89 (325)
T ss_pred chhhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcc
Confidence 34445679999999999999 99999999999999999999998 99999999998543
No 414
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.5e-08 Score=108.75 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=109.0
Q ss_pred CCCcccccccchhhhcccCCCceee------eecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHH
Q 006094 11 SPRRRPGLLRDQVQLVKKKDSDRYE------IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (661)
Q Consensus 11 s~~r~~~ll~~~~~l~~~~~~~~ie------i~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (661)
..++.+.|++...+..+.++.+.+. +.-...+|.+. +...+|++++|.++.|+ .++|+|+||+||||+++
T Consensus 232 dme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~-~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~r 307 (497)
T COG5265 232 DMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD-PRRPILNGISFTIPLGK---TVAIVGESGAGKSTILR 307 (497)
T ss_pred hHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecc-ccchhhcCccccccCcc---EEEEEeCCCCcHHHHHH
Confidence 4456677777777777776544332 11222233322 35679999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhcc----------------ccc-ccc
Q 006094 85 KVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP 139 (661)
Q Consensus 85 ~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~g----------------~~I-~~P 139 (661)
.|-.++ +..|.|.+|++.. .++.++.++|+.-+|+ ++...|++.-+.. ..+ ..|
T Consensus 308 llfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP 386 (497)
T COG5265 308 LLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP 386 (497)
T ss_pred HHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCc
Confidence 999998 8899999999843 2345888999887775 4555555422110 001 112
Q ss_pred -ccccccccc----cccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 140 -IYDFKSSSR----IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 140 -~yd~~~~~r----~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.|+-..+++ ++++.++++.++.++-+++.++.||-...+|-
T Consensus 387 ~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 387 EGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred hhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 233333332 34556667777777777777777776655554
No 415
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.57 E-value=2.9e-07 Score=88.52 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=72.9
Q ss_pred cceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEeehhhHHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcc
Q 006094 296 QSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRK 375 (661)
Q Consensus 296 de~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v~~~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~ 375 (661)
+..+|+|..++.+.||||||+.+ .+|.+.+++|....-+.|.. +..+..|.|.|.+|..++.++++|.++|+| .
T Consensus 34 ~~~lRiR~~~~~~~lT~K~~~~~---~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~~~~~lD~~~g~~-~ 107 (148)
T cd07891 34 ERTVRVRIAGDRAYLTIKGPTNG---LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGGHTWEVDVFHGEN-A 107 (148)
T ss_pred CcEEEEEEeCCEEEEEEEeCCCC---ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCCEEEEEEEEcCCC-C
Confidence 47999999999999999999877 66888888888766667765 567789999999999999999999999999 6
Q ss_pred ---eEEEEeccHH
Q 006094 376 ---YVQVQGRDRL 385 (661)
Q Consensus 376 ---FveI~g~~~~ 385 (661)
|+||+..+-+
T Consensus 108 gL~~~EiE~~~e~ 120 (148)
T cd07891 108 GLVVAEIELPSED 120 (148)
T ss_pred ceEEEEEEcCCcc
Confidence 9999776544
No 416
>PRK06762 hypothetical protein; Provisional
Probab=98.56 E-value=5.2e-07 Score=86.58 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=68.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC-CceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 144 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp-~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~ 144 (661)
+.+|+|+|++||||||+++.|+..++ +...++.|.+.. .....++.+..+....+.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~---~l~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR---DMLRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH---HhccccCCCCCcCHHHHHHHHHHH--------------
Confidence 56899999999999999999999884 333444443321 111112223333322222211110
Q ss_pred cccccccceeeccCccEEEEEehhhhh------ccccCCC---CEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 145 SSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 145 ~~~r~~~~~~~v~~a~VVIVEGilaL~------deLr~ll---DlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
......+|+|+.+.-. ..+.... ...||+++|.++++.|...|.. ..+.+.+.+..+|.
T Consensus 65 -----------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~ 132 (166)
T PRK06762 65 -----------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWN 132 (166)
T ss_pred -----------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHh
Confidence 1233567778775321 1233333 3799999999998888777753 12345555555553
Q ss_pred h
Q 006094 216 E 216 (661)
Q Consensus 216 ~ 216 (661)
.
T Consensus 133 ~ 133 (166)
T PRK06762 133 P 133 (166)
T ss_pred h
Confidence 3
No 417
>PLN03140 ABC transporter G family member; Provisional
Probab=98.56 E-value=4.3e-08 Score=122.93 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=93.2
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEecCCcccc----ccccccccCCCCCCch
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp---~~g~I~lD~~~~~----~~~i~~~fq~p~~~d~ 120 (661)
+...+|++||+.+++|+ +++|+||||||||||+++|++..+ ..|.|.++|.... .+.++|++|++..++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 34579999999999999 999999999999999999999872 4688999987432 2347899999988998
Q ss_pred hhHHHHHHhhhc---cccc----------------ccc-cccccc-----ccccccceeeccCccEEEEEehhhhhcccc
Q 006094 121 DTLLENIRGLKE---GKAV----------------QVP-IYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 121 ~tl~enL~~L~~---g~~I----------------~~P-~yd~~~-----~~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
.++.|++..... ...+ ... ..+... ...++++..++..+..++.++.+++.||+.
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 999999864211 0100 000 111111 123344555566666777788888888888
Q ss_pred CCCCE
Q 006094 176 PLIDL 180 (661)
Q Consensus 176 ~llDl 180 (661)
..+|.
T Consensus 1048 sgLD~ 1052 (1470)
T PLN03140 1048 SGLDA 1052 (1470)
T ss_pred CCCCH
Confidence 88886
No 418
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=1.7e-08 Score=116.75 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=111.7
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCcccc----ccccccccCCCCCCch
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~----~~~i~~~fq~p~~~d~ 120 (661)
.+.+|++|+..+++|+ +.||.||||||||||+++|++..+ -.|.|.++|.... ....+|+-|+..+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 5789999999999999 999999999999999999999983 4799999995332 2346899999999999
Q ss_pred hhHHHHHHh---hhccccccc--------------c---ccccccc-----cccccceeeccCccEEEEEehhhhhcccc
Q 006094 121 DTLLENIRG---LKEGKAVQV--------------P---IYDFKSS-----SRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 121 ~tl~enL~~---L~~g~~I~~--------------P---~yd~~~~-----~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
.+|.|.+.. ++-...... . .-|-..+ ..++++..++..+--++.++.++|.||+.
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 999999853 222111000 0 0011111 12234555555566688899999999999
Q ss_pred CCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchh
Q 006094 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYK 223 (661)
Q Consensus 176 ~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~ 223 (661)
..+|-. ....+++-+++ +++.|++.--.+||=...+..+++
T Consensus 199 SGLDS~------sA~~vv~~Lk~-lA~~grtVi~tIHQPss~lf~lFD 239 (613)
T KOG0061|consen 199 SGLDSF------SALQVVQLLKR-LARSGRTVICTIHQPSSELFELFD 239 (613)
T ss_pred CCcchh------hHHHHHHHHHH-HHhCCCEEEEEEeCCcHHHHHHHh
Confidence 999863 23334444444 444488765555554444444443
No 419
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.55 E-value=9e-08 Score=120.67 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=98.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc-------cc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-------SS 105 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-------~~ 105 (661)
.+++.+++..|.. +...+|+++||.+++|+ .|||+|+||||||||++.|.++++..|.|.+||... .+
T Consensus 1217 ~I~f~nVs~~Y~~--~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR 1291 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE--AGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWR 1291 (1490)
T ss_pred eEEEEEEEEEeCC--CCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHH
Confidence 4667776666632 34579999999999999 999999999999999999999987789999999743 23
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhccc---------------cc-ccc-ccccccc----cccccceeeccCccEEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~---------------~I-~~P-~yd~~~~----~r~~~~~~~v~~a~VVIV 164 (661)
+.+++++|+|.+|+ .++++||.....-. .+ ..| .+|...+ ..++++.+.+.-++.++-
T Consensus 1292 ~~is~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1292 KAFGVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred hceEEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 46889999999998 48999885322100 00 011 1222222 123445555555666666
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
....++.||....+|.
T Consensus 1371 ~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDP 1386 (1490)
T ss_pred CCCEEEEeCCcccCCH
Confidence 6666666777766665
No 420
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.54 E-value=2.4e-07 Score=88.50 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=78.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc-cccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~-~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
+|+|+|++||||||+++.|++.+ +...++.|.. .......+. +...+.... . ..|.+.....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~---~-----~~~~~~~~~~ 64 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFRELAAKMGL--------DLIEFLNYA---E-----ENPEIDKKID 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHHHHHHHcCC--------CHHHHHHHH---h-----cCcHHHHHHH
Confidence 79999999999999999999986 3335555432 111111110 000000000 0 0010000000
Q ss_pred cccccceeec-cCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhc
Q 006094 147 SRIGYRTLEV-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAF 225 (661)
Q Consensus 147 ~r~~~~~~~v-~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~f 225 (661)
.. .... ...+.+|++|.+... .+.+.+|++|||++|.++|..|...| .|.+.+++..++.+......+.|
T Consensus 65 ~~----i~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R----~~~s~~~a~~~~~~~d~~~~~~~ 135 (171)
T TIGR02173 65 RR----IHEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKR----EGKSLTVARSETIEREESEKRRY 135 (171)
T ss_pred HH----HHHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0011 123456779976543 23467899999999998876554444 47788888777765554443322
Q ss_pred cCC------CCCCceEEEECC
Q 006094 226 IEP------DLQTAHIKIINK 240 (661)
Q Consensus 226 IeP------~k~~ADIII~N~ 240 (661)
... ....-|++|+.+
T Consensus 136 ~~~~~~~~~~~~~ydl~i~t~ 156 (171)
T TIGR02173 136 LKFYGIDIDDLSIYDLVINTS 156 (171)
T ss_pred HHHhCCCccccccccEEEECC
Confidence 221 224557777644
No 421
>PLN03232 ABC transporter C family member; Provisional
Probab=98.54 E-value=3.6e-08 Score=124.33 Aligned_cols=163 Identities=15% Similarity=0.037 Sum_probs=104.9
Q ss_pred CCCCCCcccccccchhhhcccC-----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKK-----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~-----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
+..|.+|+..++..+.+..... ....+++.+++..|... ....+|+++||.+++|+ .++|+|++|||||||
T Consensus 584 a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTL 659 (1495)
T PLN03232 584 ANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSK-TSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSL 659 (1495)
T ss_pred HHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCC-CCCceeeeeEEEEcCCC---EEEEECCCCCcHHHH
Confidence 3456778888776543322111 11235666665554311 12468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcc---------------ccc-cccc-cccc
Q 006094 83 TEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEG---------------KAV-QVPI-YDFK 144 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------------~~I-~~P~-yd~~ 144 (661)
++.|.+.+ |..|.+. ..+..++|+.|+|.+|+ .++++|+..-..- ..+ ..|. ++-.
T Consensus 660 l~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~ 733 (1495)
T PLN03232 660 ISAMLGELSHAETSSV-----VIRGSVAYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733 (1495)
T ss_pred HHHHhCCCcccCCCEE-----EecCcEEEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCce
Confidence 99999998 5554331 12345788999998886 5888887532110 001 1121 1111
Q ss_pred cc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 145 SS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 145 ~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+ ..++++.+++.-++.++-+...++.||+...+|.
T Consensus 734 IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 734 IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 22 2455677777777777777777777887777775
No 422
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.53 E-value=8.1e-08 Score=120.34 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=93.8
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-----CCceEEecCCccc------cccccccccCCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYND------SSRIIDGNFDDPR 116 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-----p~~g~I~lD~~~~------~~~~i~~~fq~p~ 116 (661)
..+.+|+++|+.+++|+ +++|+||||||||||++.|++.. |..|.|.++|... .+..+++++|++.
T Consensus 72 ~~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148 (1394)
T ss_pred CcceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc
Confidence 34679999999999999 99999999999999999999985 4789999999632 1234789999998
Q ss_pred CCchhhHHHHHHhhhc--c-c----cc----------c--ccc------ccc-----ccccccccceeeccCccEEEEEe
Q 006094 117 LTDYDTLLENIRGLKE--G-K----AV----------Q--VPI------YDF-----KSSSRIGYRTLEVPSSRIVIIEG 166 (661)
Q Consensus 117 ~~d~~tl~enL~~L~~--g-~----~I----------~--~P~------yd~-----~~~~r~~~~~~~v~~a~VVIVEG 166 (661)
.++..++.|++..... . . .. . ... .+. .....++++..++..+..++.++
T Consensus 149 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 9999999999864211 0 0 00 0 000 000 01223455666666677777788
Q ss_pred hhhhhccccCCCCE
Q 006094 167 IYALSEKLRPLIDL 180 (661)
Q Consensus 167 ilaL~deLr~llDl 180 (661)
.+++.||+...+|.
T Consensus 229 ~vlllDEPTsgLD~ 242 (1394)
T TIGR00956 229 KIQCWDNATRGLDS 242 (1394)
T ss_pred CEEEEeCCCCCcCH
Confidence 88888888888885
No 423
>PLN03130 ABC transporter C family member; Provisional
Probab=98.53 E-value=4.6e-08 Score=123.91 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCCCCCcccccccchhhhccc-----CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKK-----KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~-----~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
+..|.+|+..++......... .....+++.+++..|... ....+|+++||.+++|+ +++|+|++|||||||
T Consensus 584 a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTL 659 (1622)
T PLN03130 584 ANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSK-AERPTLSNINLDVPVGS---LVAIVGSTGEGKTSL 659 (1622)
T ss_pred HHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCC-CCCceeeceeEEecCCC---EEEEECCCCCCHHHH
Confidence 345677888877543221110 011246666665555311 12468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCc-eEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcc---------------ccc-cccc-ccc
Q 006094 83 TEKVLNFM-PSI-AVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEG---------------KAV-QVPI-YDF 143 (661)
Q Consensus 83 ak~La~ll-p~~-g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------------~~I-~~P~-yd~ 143 (661)
++.|.+.+ |.. |.|.+. ..++|+.|+|-+|+ .++++|+..-..- ..+ ..|. ++-
T Consensus 660 l~lLlG~~~~~~GG~I~l~------~~Iayv~Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T 732 (1622)
T PLN03130 660 ISAMLGELPPRSDASVVIR------GTVAYVPQVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLT 732 (1622)
T ss_pred HHHHHHhhccCCCceEEEc------CeEEEEcCccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccc
Confidence 99999998 677 787643 35788999998886 5888887532110 001 1121 111
Q ss_pred ccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 144 KSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 144 ~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..+ ..++++.+++.-++.+.-+...++.|++...+|.
T Consensus 733 ~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 733 EIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 112 2455677777777777777777777777777764
No 424
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.52 E-value=5e-07 Score=88.92 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+|+|+|||||||||+++.|++.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 89999999999999999999986
No 425
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.50 E-value=7.6e-08 Score=121.56 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=106.0
Q ss_pred CCCCCcccccccchhhhcc----c--C-C-CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHH
Q 006094 9 ADSPRRRPGLLRDQVQLVK----K--K-D-SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~----~--~-~-~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (661)
..|.+|+...+..+..-.. . . . ...+++.+++..|. .....+++++||.+++|+ +++|+|++|||||
T Consensus 604 ~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKS 678 (1522)
T TIGR00957 604 SVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWA--RDLPPTLNGITFSIPEGA---LVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcC--CCCCceeeeeEEEEcCCC---EEEEECCCCCCHH
Confidence 4566777777754321110 0 0 0 12566666665552 222468999999999999 9999999999999
Q ss_pred HHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcc---------------cccc-ccc---
Q 006094 81 VFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEG---------------KAVQ-VPI--- 140 (661)
Q Consensus 81 TLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g---------------~~I~-~P~--- 140 (661)
||++.|.+.+ |..|.|.+++ .++|++|+|..++ .++.+|+..-..- ..+. .|.
T Consensus 679 TLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~ 751 (1522)
T TIGR00957 679 SLLSALLAEMDKVEGHVHMKG------SVAYVPQQAWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDR 751 (1522)
T ss_pred HHHHHHhCCCccCCcEEEECC------EEEEEcCCccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCC
Confidence 9999999998 7889999886 4778888887765 5778777531100 0010 111
Q ss_pred --cccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 141 --YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 141 --yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
........++++.+++.-++.+.-+..+++.||+...+|.
T Consensus 752 t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 752 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 1111223455666777777777777777777887777775
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.50 E-value=9.1e-07 Score=85.90 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp 91 (661)
+++|+|||||||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999874
No 427
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.49 E-value=8.6e-08 Score=109.04 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=90.4
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
..++++.+++++|.- ...+++++||.+.+|+ .|||+||||+|||||++.|++.+ |..|.|.+... -.++
T Consensus 319 ~~vl~~~~~~~~y~~---~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~ig 388 (530)
T COG0488 319 KLVLEFENVSKGYDG---GRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIG 388 (530)
T ss_pred CeeEEEeccccccCC---CceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEE
Confidence 346777777777622 2688999999999999 99999999999999999999987 67777776542 1233
Q ss_pred cccCCCC-CCchhhHHHHHHhhhc-----------------cccccccccccccccccccceeeccCccEEEEEehhhhh
Q 006094 110 GNFDDPR-LTDYDTLLENIRGLKE-----------------GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 110 ~~fq~p~-~~d~~tl~enL~~L~~-----------------g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
|.-|+.. .++..++.+.+..... +..+..|+ ...++++..++.-+.++.-.+.+++.
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiL 463 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLL 463 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEE
Confidence 4334332 1233344444443321 12222222 23445566666677777777888888
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+.+.+|+
T Consensus 464 DEPTNhLDi 472 (530)
T COG0488 464 DEPTNHLDI 472 (530)
T ss_pred cCCCccCCH
Confidence 999999997
No 428
>PRK04182 cytidylate kinase; Provisional
Probab=98.47 E-value=6e-07 Score=86.31 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=74.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc-ccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN-DSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~-~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
+|+|+|++||||||+++.|+..+ +...++.+... ......+. +...+.+ . + ...|.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~~~~~~~g~--------~~~~~~~----~--~--~~~~~~~~~~~ 64 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFRELAKERGM--------SLEEFNK----Y--A--EEDPEIDKEID 64 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHHHHHHHcCC--------CHHHHHH----H--h--hcCchHHHHHH
Confidence 79999999999999999999887 33345443321 10000110 0000000 0 0 00111111111
Q ss_pred cccccceeecc-CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccc---h
Q 006094 147 SRIGYRTLEVP-SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM---Y 222 (661)
Q Consensus 147 ~r~~~~~~~v~-~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~---~ 222 (661)
.. ..... ....+|++|.+... -+.+..+++|||++|.+++..|...| .+++.++....+.+...+. |
T Consensus 65 ~~----~~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r----~~~~~~~a~~~~~~~d~~~~~~~ 135 (180)
T PRK04182 65 RR----QLEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAER----EGISVEEALEETIEREESEAKRY 135 (180)
T ss_pred HH----HHHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 01111 23446677765432 11234789999999988865554443 3556665554443333222 1
Q ss_pred hhcc---CCCCCCceEEEECCC
Q 006094 223 KAFI---EPDLQTAHIKIINKF 241 (661)
Q Consensus 223 ~~fI---eP~k~~ADIII~N~~ 241 (661)
..+. .+....||++|+++.
T Consensus 136 ~~~~~~~~~~~~~~d~~idt~~ 157 (180)
T PRK04182 136 KEYYGIDIDDLSIYDLVINTSR 157 (180)
T ss_pred HHHhCCCccccccccEEEECCC
Confidence 1111 344468999998654
No 429
>PLN03073 ABC transporter F family; Provisional
Probab=98.46 E-value=6.7e-08 Score=113.76 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=48.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh----CCCceEEe
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVIT 97 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l----lp~~g~I~ 97 (661)
..++.+.+++..| +...+|+++||.+.+|+ .+||+|+||||||||+++|++. +|..|.|.
T Consensus 175 ~~~I~i~nls~~y----~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~ 238 (718)
T PLN03073 175 IKDIHMENFSISV----GGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 (718)
T ss_pred ceeEEEceEEEEe----CCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE
Confidence 3467777776666 34569999999999999 9999999999999999999974 35555554
No 430
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.46 E-value=8.4e-08 Score=120.92 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=85.1
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHHHH
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~ 128 (661)
..+|+++||.+++|+ +++|+||+|||||||++.|.+.+ |..|.|.++| .++|++|+|.+|+. ++.+|+.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~~-Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMPG-TIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCCc-cHHHHHH
Confidence 358999999999999 99999999999999999999998 7899999887 37889999988874 8888876
Q ss_pred hhhccc---------------ccc-ccccc-----cccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 129 GLKEGK---------------AVQ-VPIYD-----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 129 ~L~~g~---------------~I~-~P~yd-----~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
...... .+. .|.-+ ......++++..++.-++.++-+..+++.|++...+|.
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 321100 000 01111 11123445566666666666666666666666666664
No 431
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.45 E-value=8.2e-07 Score=106.02 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=68.1
Q ss_pred cEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEEC
Q 006094 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N 239 (661)
.-+|+||--+. .-+++..|+|||++|+.++|..||...... ..+.+++.+++.+++..+..+-+.|.+...|.++.+
T Consensus 190 ~~~V~eGRDig-TvVfPdA~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iD 266 (863)
T PRK12269 190 ARVVCEGRDLT-TVVFVDADLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVD 266 (863)
T ss_pred CCEEEECCCCc-cEECCCCCEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEE
Confidence 34888988776 468899999999999999999999877552 468999999999999999999999999999999877
Q ss_pred CC
Q 006094 240 KF 241 (661)
Q Consensus 240 ~~ 241 (661)
+.
T Consensus 267 ts 268 (863)
T PRK12269 267 TS 268 (863)
T ss_pred CC
Confidence 65
No 432
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.44 E-value=9.2e-07 Score=85.70 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~ 92 (661)
+|+|+|||||||||+++.|++.++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 8999999999999999999998743
No 433
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.40 E-value=2.3e-07 Score=111.72 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=76.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
.+-+.++.+.|+...+ |++++++.+++|+ +.|+.|+|||||||+.++|.|.. |+.|.+.+.|+..
T Consensus 564 ~~~~~~L~k~y~~~~~---Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~ 637 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDG---AVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQ 637 (885)
T ss_pred eEEEcceeeeecchhh---hhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhh
Confidence 3445566666644333 8999999999999 99999999999999999999998 8899999988743
Q ss_pred cccccccccCCCCCCchhhHHHHHHhhh
Q 006094 104 SSRIIDGNFDDPRLTDYDTLLENIRGLK 131 (661)
Q Consensus 104 ~~~~i~~~fq~p~~~d~~tl~enL~~L~ 131 (661)
..+.+||.+|+..+++..+.+|++..+.
T Consensus 638 ~~~~iGyCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 638 VRKQLGYCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred hhhhcccCCchhhhhhhccHHHHHHHHH
Confidence 2345899999999999999999886443
No 434
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.39 E-value=1.2e-06 Score=87.22 Aligned_cols=170 Identities=17% Similarity=0.289 Sum_probs=123.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCccccc-------------cccccccCCCCCCchhhHHHHHH
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~~~~~-------------~~i~~~fq~p~~~d~~tl~enL~ 128 (661)
.++|+|+|.||+|-||....+...+ -....|.-|.++... +...+.+-.|.+.|+..+.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 3599999999999999887776654 134455566664321 11234445678888888888887
Q ss_pred hhhcccccccc----------ccccccccccccceeeccCccEEEEEehhhhh--c--cccCCCCEEEEEEcCchhHHHH
Q 006094 129 GLKEGKAVQVP----------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--E--KLRPLIDLRVSVTGGVHFDLVK 194 (661)
Q Consensus 129 ~L~~g~~I~~P----------~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~--d--eLr~llDlkIfVdad~diRLiR 194 (661)
.+.+...-... .|+...+....++.. -.+.+++..||.+... + .+...+|++|-|.+-..+.++.
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQ 163 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQ 163 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHH
Confidence 76543221111 233334444443322 2457999999998874 2 5778999999999999999999
Q ss_pred HHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEE
Q 006094 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (661)
Q Consensus 195 RI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII 237 (661)
++.||..+||.+.|.|.+.+.+. +++|-.||-|+....||-+
T Consensus 164 K~~RDt~~RGhSrEAVmDsivRs-MdDYinyItPQFSrThINF 205 (289)
T COG3954 164 KLIRDTSERGHSREAVMDSVVRS-MDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHhcccccCccHHHHHHHHHHh-hhhHHhhcCccccccccce
Confidence 99999999999999999998654 8899999999988888754
No 435
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.38 E-value=6.5e-07 Score=86.95 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC--CCceEEecCC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD~ 100 (661)
++.+|.|+|++||||||+++.|...+ ++.+.+.+|+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 44599999999999999999999887 3445555554
No 436
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=1.6e-07 Score=115.58 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred CCCCCCCcccccccchhh----hccc-C-----CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCC
Q 006094 7 SGADSPRRRPGLLRDQVQ----LVKK-K-----DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSG 76 (661)
Q Consensus 7 ~~~~s~~r~~~ll~~~~~----l~~~-~-----~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSG 76 (661)
+...|-+|+.+-.+.+++ +... + ....+++++++-.|+ .+.-.||++|+|.+++|+ .|||+|.+|
T Consensus 1102 n~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr--p~lp~VLk~is~~I~p~e---KVGIVGRTG 1176 (1381)
T KOG0054|consen 1102 NNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYR--PNLPLVLKGISFTIKPGE---KVGIVGRTG 1176 (1381)
T ss_pred hcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeC--CCCcchhcCceEEEcCCc---eEEEeCCCC
Confidence 456777888887775444 2111 1 122577777777664 345689999999999999 999999999
Q ss_pred CcHHHHHHHHHHhC-CCceEEecCCcc-------ccccccccccCCCCCCc
Q 006094 77 AGKTVFTEKVLNFM-PSIAVITMDNYN-------DSSRIIDGNFDDPRLTD 119 (661)
Q Consensus 77 SGKSTLak~La~ll-p~~g~I~lD~~~-------~~~~~i~~~fq~p~~~d 119 (661)
||||||+.+|-++. |..|.|.+||.+ +.+..++..+|+|-+|.
T Consensus 1177 aGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs 1227 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS 1227 (1381)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec
Confidence 99999999999998 788999999984 33456778888887763
No 437
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=3.1e-06 Score=84.13 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=81.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccc-----ccccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~-----~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
.++.|.||||+||||++++|.... .-.+++......++ ...|.| .+-.+....+..+.-+++..|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~F--------vs~~EF~~~i~~~~fLE~a~~ 74 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFF--------VTEEEFEELIERDEFLEWAEY 74 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEe--------CCHHHHHHHHhcCCcEEEEEE
Confidence 499999999999999999999875 22333332222221 122333 223333344555666777654
Q ss_pred ccc-cccccccceeeccCccEEEEEehhhhhccccCCC-C-EEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhc
Q 006094 142 DFK-SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (661)
Q Consensus 142 d~~-~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll-D-lkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v 218 (661)
.-. .++....-........-+|+|--+-..-.++..+ | ..||+.+|.-..|.+|+.+ ||..-++++++-+...
T Consensus 75 ~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~a 150 (191)
T COG0194 75 HGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKG----RGTDSEEVIARRLENA 150 (191)
T ss_pred cCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHHH
Confidence 322 2222111111122333444443333322334333 4 6899999987777666554 5765555544433443
Q ss_pred ccchhhccCCCCCCceEEEECC
Q 006094 219 YPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~N~ 240 (661)
......+ ..-|++|.|+
T Consensus 151 ~~Ei~~~-----~~fdyvivNd 167 (191)
T COG0194 151 KKEISHA-----DEFDYVIVND 167 (191)
T ss_pred HHHHHHH-----HhCCEEEECc
Confidence 3332222 3368898876
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.33 E-value=2.7e-06 Score=84.30 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=25.0
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
++|+ +|+|+||||||||||++.|++.++
T Consensus 3 ~~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 3556 999999999999999999999875
No 439
>PTZ00243 ABC transporter; Provisional
Probab=98.33 E-value=2.6e-07 Score=116.95 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=86.9
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHHH
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL 127 (661)
...+|+++||.+++|+ +++|+|+||||||||++.|.+.+ |..|.|.++ ..++|++|+|.+++ .++.+|+
T Consensus 672 ~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv~enI 741 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATVRGNI 741 (1560)
T ss_pred CceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcHHHHH
Confidence 3568999999999999 99999999999999999999998 788888753 35788999988775 5788877
Q ss_pred Hhhhccc------ccc----------cc-----ccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 128 RGLKEGK------AVQ----------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 128 ~~L~~g~------~I~----------~P-----~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
....... .+. .| ..+......++++..++.-++.++-+..+++.||+...+|.
T Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 5321100 000 01 01122233445666667777777777777777887777775
No 440
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.30 E-value=1.3e-06 Score=72.90 Aligned_cols=26 Identities=42% Similarity=0.797 Sum_probs=23.7
Q ss_pred EEEEEehhhhhc----cccCCCCEEEEEEc
Q 006094 161 IVIIEGIYALSE----KLRPLIDLRVSVTG 186 (661)
Q Consensus 161 VVIVEGilaL~d----eLr~llDlkIfVda 186 (661)
++|+||.+.+.. ++.+.+|++||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999985 58899999999997
No 441
>PRK08356 hypothetical protein; Provisional
Probab=98.29 E-value=8e-07 Score=88.21 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..+|+|+||+||||||+++.|.. . +...|++.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~-g~~~is~~~~ 38 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K-GFCRVSCSDP 38 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C-CCcEEeCCCc
Confidence 45899999999999999999975 4 4457777764
No 442
>COG4240 Predicted kinase [General function prediction only]
Probab=98.29 E-value=1.4e-06 Score=88.85 Aligned_cols=109 Identities=20% Similarity=0.353 Sum_probs=75.5
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC---C--CceEEecCCcccccc-------ccccccC---CCCCCchhhHHHH
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM---P--SIAVITMDNYNDSSR-------IIDGNFD---DPRLTDYDTLLEN 126 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~ll---p--~~g~I~lD~~~~~~~-------~i~~~fq---~p~~~d~~tl~en 126 (661)
+.++|+++||+||-||||||++-.|..++ . ..+.+++|+++.... ...-..+ -|...|.....+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 44569999999999999999999998876 2 578899999864321 1111111 2556777777777
Q ss_pred HHhhhccc-cccccccccccc----cccc-cceeeccCccEEEEEehhhhh
Q 006094 127 IRGLKEGK-AVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 127 L~~L~~g~-~I~~P~yd~~~~----~r~~-~~~~~v~~a~VVIVEGilaL~ 171 (661)
|..+.+|+ .+..|.||.+.+ .|.. .+.. ..+.+++|+||.+...
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~i-k~~vdivIlEGWfvGf 175 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWI-KFEVDIVILEGWFVGF 175 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCcccce-ecceeEEEEeeeeeec
Confidence 87777665 568899999654 3432 1222 2338999999988754
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.29 E-value=1e-06 Score=80.48 Aligned_cols=69 Identities=17% Similarity=0.042 Sum_probs=49.3
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc-------cccccccccCCCCCCchhh
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~t 122 (661)
..+|++++|.+.+++ +++|.||||||||||++++. .|.+.+++... ..+...+.+|+ +| +.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhh
Confidence 368999999999999 99999999999999999986 34555555421 11224455554 33 456
Q ss_pred HHHHHHh
Q 006094 123 LLENIRG 129 (661)
Q Consensus 123 l~enL~~ 129 (661)
+.+||.-
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 7777653
No 444
>PRK04040 adenylate kinase; Provisional
Probab=98.28 E-value=1.3e-06 Score=86.99 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=30.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC-CceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp-~~g~I~lD~~ 101 (661)
+.+|+|+|.+||||||+++.|+..++ +...++++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 56899999999999999999999985 5566666665
No 445
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.27 E-value=2.1e-06 Score=83.22 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=60.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc--------ccccccccCCCCCCchhhHHHHHHhhhccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~--------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~ 138 (661)
.+|+|+|++||||||+++.|+..+ +.-.++.++.... ...+...++....++...+.+.+.....
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMV------ 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------
Confidence 489999999999999999999776 2334444432100 0111222333333443444333322110
Q ss_pred cccccccccccccceeeccCccEEEEEehhhhh------ccccCCCCEEEEEEcCchhHHHHHHHHH
Q 006094 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (661)
Q Consensus 139 P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~------deLr~llDlkIfVdad~diRLiRRI~RD 199 (661)
........+|+||..--. .......|+.||+++|.++...|...|.
T Consensus 77 ---------------~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 77 ---------------AALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred ---------------cccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 012234567778853111 1112357999999999888665554443
No 446
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.2e-06 Score=88.28 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
++++.++ +..++.+.+|++|++.+++|+ -.+|+|+||||||||++.+++.. |..|.+.+-|.
T Consensus 31 li~l~~v----~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~ 93 (257)
T COG1119 31 LIELKNV----SVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93 (257)
T ss_pred eEEecce----EEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence 4555544 345578899999999999999 89999999999999999999998 66666666554
No 447
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.20 E-value=5.6e-07 Score=97.72 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=52.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~ 103 (661)
-+|+.++...|.. ..| -+.-||+.+.+|+ +|-|+|.|||||||+++.|.|+. |.+|.|.+||...
T Consensus 322 ~lelrnvrfay~~--~~F-hvgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQD--NAF-HVGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCc--ccc-eecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 3566666555421 222 3678999999999 99999999999999999999999 9999999999843
No 448
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.11 E-value=1.9e-05 Score=79.29 Aligned_cols=160 Identities=23% Similarity=0.296 Sum_probs=101.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-------CCceEEecCCccccccc-cc--------cccC---CCCCCchhhHHHH
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM-------PSIAVITMDNYNDSSRI-ID--------GNFD---DPRLTDYDTLLEN 126 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll-------p~~g~I~lD~~~~~~~~-i~--------~~fq---~p~~~d~~tl~en 126 (661)
|++||+.||.||||||++-+|-..+ -.++.+++|+++..... .. -..| .+...|...+.+.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ev 110 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEV 110 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHH
Confidence 8999999999999999988775543 16889999998643211 00 1112 2455677777777
Q ss_pred HHhhhcc----cccccccccccccc----ccc-cceeeccCccEEEEEehhhhhccc-------cC--------------
Q 006094 127 IRGLKEG----KAVQVPIYDFKSSS----RIG-YRTLEVPSSRIVIIEGIYALSEKL-------RP-------------- 176 (661)
Q Consensus 127 L~~L~~g----~~I~~P~yd~~~~~----r~~-~~~~~v~~a~VVIVEGilaL~deL-------r~-------------- 176 (661)
|..+..+ ..+..|.||.+... |.. .+..++.+-.++|+||.++....+ .+
T Consensus 111 Lna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~ 190 (282)
T KOG2878|consen 111 LNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKLE 190 (282)
T ss_pred HHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHHH
Confidence 7766543 45889999887533 332 345667788999999998865211 00
Q ss_pred --------CCCEEEEEEcCc-hhHHHHHHHHHHH-----hhCCCHHHHHHHHHhhcccchhhcc
Q 006094 177 --------LIDLRVSVTGGV-HFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 226 (661)
Q Consensus 177 --------llDlkIfVdad~-diRLiRRI~RDi~-----eRG~s~EeVi~q~~~~v~P~~~~fI 226 (661)
..|-.|-+.++. .--..+|++..+. ..|.+-|+|.+-. .+.+|.|..|+
T Consensus 191 ~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV-~rYmP~Yk~YL 253 (282)
T KOG2878|consen 191 AYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFV-SRYMPAYKAYL 253 (282)
T ss_pred HHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHH-HhhhhHHHhhh
Confidence 122233333332 2233455555442 3488888886644 67789998776
No 449
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.09 E-value=2.3e-06 Score=84.56 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=42.5
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
|--+|..+..|+ ++-++|||||||||++..+++++|.+|.|.++|.
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~ 60 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQ 60 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCc
Confidence 446778899999 9999999999999999999999999999999997
No 450
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.04 E-value=1.7e-05 Score=77.72 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=77.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccc-----ccccccCCCCCCchhhHHHHHHhhhccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~-----~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~ 140 (661)
+.+|.|+|||||||||+++.|...+|..-....-.....++ ...|.| .+.+.+. .....|..+++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~f-----vs~~~f~---~~~~~~~fie~~~ 73 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHF-----VSKEEFE---RMIKAGEFIEYGE 73 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE-------HHHHH---HHHHTTHEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEE-----Eeechhh---hhhccccEEEEee
Confidence 34899999999999999999999886422111111111111 111222 1222222 2234566666665
Q ss_pred cccc-cccccccceeeccCccEEEEEehhhhhcccc--CCCCEEEEEEcCchhHHHHHHHHHHHhhCCC-HHHHHHHHHh
Q 006094 141 YDFK-SSSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE-PEEIIHQISE 216 (661)
Q Consensus 141 yd~~-~~~r~~~~~~~v~~a~VVIVEGilaL~deLr--~llDlkIfVdad~diRLiRRI~RDi~eRG~s-~EeVi~q~~~ 216 (661)
|+.. .+.....-...+...++++++.-.-....++ ...-+.|||.++....+.+++ .++|.. .+.+..+...
T Consensus 74 ~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l----~~r~~~~~~~i~~r~~~ 149 (183)
T PF00625_consen 74 YDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRL----RRRGDESEEEIEERLER 149 (183)
T ss_dssp ETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHH----HTTTHCHHHHHHHHHHH
T ss_pred ecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHH----hccccccHHHHHHHHHH
Confidence 5322 1211110011123455566654332222222 344478999998766666554 345644 4455555432
Q ss_pred hcccchhhccCCCCCCceEEEECC
Q 006094 217 TVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 217 ~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
. ...+..+- ..|.+|.|+
T Consensus 150 ~-~~~~~~~~-----~fd~vi~n~ 167 (183)
T PF00625_consen 150 A-EKEFEHYN-----EFDYVIVND 167 (183)
T ss_dssp H-HHHHGGGG-----GSSEEEECS
T ss_pred H-HHHHhHhh-----cCCEEEECc
Confidence 2 22222211 179999875
No 451
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.00 E-value=6.3e-05 Score=74.01 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=80.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCc-eEEecCCcccccc----ccccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSI-AVITMDNYNDSSR----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~-g~I~lD~~~~~~~----~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
.+|.|+|||||||+|+++.|....|.. +.+...-....+. ...|.| .+-.+.-..+..|.-+++..|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f--------vs~~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF--------VSREEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE--------CCHHHHHHHHHcCCeEEEEEE
Confidence 489999999999999999999886521 1111110011110 111222 122222233445666665544
Q ss_pred cccc-ccccccceeeccCccEEEEEehhhhhccccC-CCC-EEEEEEcCchhHHHHHHHHHHHhhCC-CHHHHHHHHHhh
Q 006094 142 DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRP-LID-LRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQISET 217 (661)
Q Consensus 142 d~~~-~~r~~~~~~~v~~a~VVIVEGilaL~deLr~-llD-lkIfVdad~diRLiRRI~RDi~eRG~-s~EeVi~q~~~~ 217 (661)
.... +.....-...+...+++|+++..-....+.. ..+ +.|||.++....+.+|+.. ||. +.+.+..++...
T Consensus 75 ~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a 150 (184)
T smart00072 75 SGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAA 150 (184)
T ss_pred cCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHH
Confidence 3221 1111100111234677788776544433332 233 8999998876656666543 454 566666666432
Q ss_pred cccchhhccCCCCCCceEEEECC
Q 006094 218 VYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 218 v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
.-... . ....|.+|.|+
T Consensus 151 -~~~~~---~--~~~fd~~I~n~ 167 (184)
T smart00072 151 -QKEAQ---E--YHLFDYVIVND 167 (184)
T ss_pred -HHHHh---h--hccCCEEEECc
Confidence 11111 1 14579999886
No 452
>PLN02200 adenylate kinase family protein
Probab=98.00 E-value=1.1e-05 Score=83.11 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=30.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..+.+|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdl 77 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDL 77 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHH
Confidence 346799999999999999999999987 4456666554
No 453
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=8.3e-06 Score=99.30 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=76.9
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEecCCcccc----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS---- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p--~~g~I~lD~~~~~---- 104 (661)
++..-++++.......+.+.+|++|+=-+.+|- +-+|.|.||||||||++.|++.. . -.|.|.++|+...
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF 862 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETF 862 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhh
Confidence 344556777666656678889999999999999 99999999999999999999996 2 3688899998544
Q ss_pred ccccccccCCCCCCchhhHHHHHH
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~ 128 (661)
++..||+-|++...+..+|+|-|.
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred ccccceeecccccCcccchHHHHH
Confidence 356789988887788889998874
No 454
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.96 E-value=9.7e-05 Score=72.91 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=38.3
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
.-+.+.+.+++ .++|+||+||||||+++.|.+++ ++.+.+.+++.
T Consensus 16 ~~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 16 AYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 44566788888 99999999999999999999998 56778887765
No 455
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.94 E-value=3.6e-05 Score=78.06 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=65.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc--------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND--------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~--------~ 104 (661)
.+.+.++.-.+....|...+++.+|+++.+|+ +-|++|.||||||-+++.|.+...+.-.|..|-+.. .
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 35667777778788899999999999999999 999999999999999999999875555666665521 1
Q ss_pred --------ccccccccCCCCC
Q 006094 105 --------SRIIDGNFDDPRL 117 (661)
Q Consensus 105 --------~~~i~~~fq~p~~ 117 (661)
.+.+.+.||+|..
T Consensus 80 Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred hHHhhhhhccchhhhhcCchh
Confidence 1235678999853
No 456
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.94 E-value=1.6e-05 Score=77.78 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|.|+|++||||||+++.|++.+ +...++.|..
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~ 38 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQE 38 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCch
Confidence 69999999999999999999987 3456666653
No 457
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.91 E-value=2.6e-06 Score=76.84 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~ll 90 (661)
|+|.|++||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 458
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=97.89 E-value=5.3e-05 Score=72.74 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=70.9
Q ss_pred eeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEeehhhHHHHhhcCCeEEEEEEeeeeeeee-C
Q 006094 282 DIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYD-D 360 (661)
Q Consensus 282 DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v~~~~gL~~LGf~~~a~V~R~re~y~~-g 360 (661)
+-|+.. +.++|+|..++.+.||||++. .++|.+.+++|+......|+. +..+..|+|.|.+|.. +
T Consensus 26 q~Yl~~--------~~~vRvR~~~~~~~lT~K~~~----~~~R~E~E~~I~~~~~~~ll~--~~~~~~I~K~R~~~~~~~ 91 (146)
T cd07761 26 QGYLSI--------NPEVRIRSKGEKYILTVKSGG----GLVREEIEIEIDKKEFEHLLE--KTEGNLIEKTRYLIPLEG 91 (146)
T ss_pred EEeccC--------CcEEEEEEECCEEEEEEEcCC----CcceEEEEEeCCHHHHHHHHH--hCCCCeEEEEEEEEEeCC
Confidence 567743 479999999999999999986 356888888888554454554 7788899999999999 9
Q ss_pred CEEEEeecccccCc--ceEEEEeccH
Q 006094 361 RVCVKTDWLEQLNR--KYVQVQGRDR 384 (661)
Q Consensus 361 ~~~i~lD~ve~Lg~--~FveI~g~~~ 384 (661)
+.++++|.++|++. .|+||+-.+-
T Consensus 92 ~~~~~vD~~~g~~~gL~~~EvE~~se 117 (146)
T cd07761 92 GLLAELDVFEGRLTGLVYAEVEFPSE 117 (146)
T ss_pred CcEEEEEEEcCCCCCeEEEEEEcCCc
Confidence 99999999999864 4677765543
No 459
>PRK13949 shikimate kinase; Provisional
Probab=97.89 E-value=7.6e-06 Score=79.98 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
-|.|+|++||||||+++.|++.+ +...++.|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHH
Confidence 58999999999999999999987 4556777654
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.87 E-value=7.5e-06 Score=91.73 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=41.5
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EEecCCcc
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYN 102 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g-~I~lD~~~ 102 (661)
..+|++|++.+++|+ +|+|+|||||||||+++ .+.. |..| .|.+||..
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 457999999999999 99999999999999999 4444 6666 79999974
No 461
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.86 E-value=9.4e-06 Score=93.15 Aligned_cols=144 Identities=12% Similarity=0.087 Sum_probs=87.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-CceEEecCCc----cccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY----NDSS 105 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-~~g~I~lD~~----~~~~ 105 (661)
+.++.+++++-..+-+ ...+++++|.+.+|+ -+-|.|+||||||||.|.|+|+-| +.|.|.+-.- ..+.
T Consensus 390 ~~~i~~~nl~l~~p~~---~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ 463 (604)
T COG4178 390 DHGITLENLSLRTPDG---QTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQ 463 (604)
T ss_pred cceeEEeeeeEECCCC---CeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecC
Confidence 4567777776655322 378999999999999 999999999999999999999986 5677666521 1111
Q ss_pred c------c--ccccc-CCCCCCchhhHHHHHHhhhccccccc-cccccccccccccceeeccCccEEEEEehhhhhcccc
Q 006094 106 R------I--IDGNF-DDPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (661)
Q Consensus 106 ~------~--i~~~f-q~p~~~d~~tl~enL~~L~~g~~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr 175 (661)
+ . -...| +.+..++.+.+.+.|.+..-+.-++. ...+.-....+.+++++++-+++++--+.+++.||-.
T Consensus 464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 0 0 01122 22223677777776654322211110 0011111223445666676677777777777777766
Q ss_pred CCCCE
Q 006094 176 PLIDL 180 (661)
Q Consensus 176 ~llDl 180 (661)
..+|.
T Consensus 544 sALDe 548 (604)
T COG4178 544 SALDE 548 (604)
T ss_pred hccCh
Confidence 66654
No 462
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.84 E-value=2.7e-06 Score=85.07 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=42.8
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCc----------eEEecCCccc----cccccccccCCCCCC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSI----------AVITMDNYND----SSRIIDGNFDDPRLT 118 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~----------g~I~lD~~~~----~~~~i~~~fq~p~~~ 118 (661)
+++++.+.+| +++|+||||||||||+++|.++++.. +.+.+.+... ....++++||++..+
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc
Confidence 5677777663 79999999999999999999886321 1233333321 124578899998775
No 463
>PRK03839 putative kinase; Provisional
Probab=97.81 E-value=9.7e-05 Score=71.99 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=28.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~ 102 (661)
.|.|+|++||||||+++.|+..+ +...+++|.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhh
Confidence 58999999999999999999987 34567777653
No 464
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.81 E-value=9.6e-05 Score=70.67 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
|.|+|++||||||+++.|++.++ ...++.|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCccc
Confidence 56899999999999999999873 456677765
No 465
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.80 E-value=1.2e-05 Score=82.00 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.5
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
....+|+++||.+++|+ ++||+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge---~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNK---LVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCc---EEEEEcCCCCCHHHHH
Confidence 34578999999999999 9999999999999996
No 466
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.80 E-value=7.6e-06 Score=101.14 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=63.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
..+++.+.+.+.+. .+....|++|||.+++|+ .+||+|+.|||||+|+.+|.|.+ ...|.+.+.|- ++|
T Consensus 517 ~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaY 586 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAY 586 (1381)
T ss_pred ceEEEeeeeEecCC-CCCcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEE
Confidence 35666666655543 234458999999999999 99999999999999999999998 46788888774 456
Q ss_pred ccCCCCCCchhhHHHHH
Q 006094 111 NFDDPRLTDYDTLLENI 127 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL 127 (661)
+.|.|-.++ .++++|+
T Consensus 587 v~Q~pWI~n-gTvreNI 602 (1381)
T KOG0054|consen 587 VPQQPWIQN-GTVRENI 602 (1381)
T ss_pred eccccHhhC-CcHHHhh
Confidence 666655543 3455554
No 467
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.79 E-value=9.6e-05 Score=71.82 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+|.|+|++||||||+++.|+..+ +...|++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChH
Confidence 47899999999999999999987 4567777654
No 468
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.77 E-value=5.9e-06 Score=84.12 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=26.7
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+...++.+++ ++ +++|+||||||||||+++|...
T Consensus 13 ~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 13 KDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred ccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHH
Confidence 3345566654 56 9999999999999999999843
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.76 E-value=0.00027 Score=70.36 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=31.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD~~ 101 (661)
.++.+|+|+|++||||||+++.|.+.+ .+.+.+.+|+-
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 445699999999999999999999987 24567777764
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.74 E-value=0.00035 Score=68.82 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.0
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc----cccccccCCCCCCchhhHHHHH
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENI 127 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~----~~i~~~fq~p~~~d~~tl~enL 127 (661)
+|+ +++|+|+|||||||+++.|++++. ...+.-|..+... ...++.+++...+++.....++
T Consensus 2 ~ge---~i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGE---SYILMGVSGSGKSLIGSKIAALFS-AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHhcC-CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 356 899999999999999999999873 2233333332211 1234556655555555554444
No 471
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=8.4e-06 Score=91.11 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=79.4
Q ss_pred eeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh----CCCceEEecCCc-ccc------cccccc
Q 006094 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNY-NDS------SRIIDG 110 (661)
Q Consensus 42 ~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l----lp~~g~I~lD~~-~~~------~~~i~~ 110 (661)
.|+..+|.+.+|.+.++.+..|. -.|++|+||+|||||+++|+.- +|..-.+.-|.. +.. -....+
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~df 161 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDF 161 (582)
T ss_pred eeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHH
Confidence 56666788889999999999999 8999999999999999999982 121111111111 000 001223
Q ss_pred ccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..+++.+.....+.+....+..|-..........+...+++...+++-++.+..++-+++.||+.+++|+
T Consensus 162 l~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 162 LAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred HHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 3333322222122222221222211110011112233445556677888889999999999999999994
No 472
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.73 E-value=0.0003 Score=70.76 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++...+.+|.|+|||||||||+++.|....
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 4455567799999999999999999998653
No 473
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.70 E-value=3e-05 Score=73.91 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=28.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+..|.|+|++||||||+++.|+..+ +...++.|..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~~ 38 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDHL 38 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 3489999999999999999999987 3445555543
No 474
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.63 E-value=2.4e-05 Score=85.70 Aligned_cols=39 Identities=33% Similarity=0.404 Sum_probs=36.5
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+++++||.+++|+ +++|+|+|||||||++++|++..
T Consensus 395 eryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 395 ERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHh
Confidence 4579999999999999 99999999999999999999974
No 475
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.63 E-value=0.00027 Score=66.54 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=27.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~ 102 (661)
+|.|+|++||||||+++.|+..+ +...++.|.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~ 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLH 34 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCcccc
Confidence 47899999999999999999986 44566666653
No 476
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.61 E-value=0.0002 Score=69.87 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=27.3
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
|.|+|++||||||+++.|+..+ +...+++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEECcHH
Confidence 7899999999999999999987 4557777664
No 477
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.60 E-value=2.9e-05 Score=78.19 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.5
Q ss_pred eeccceec-cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~-~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..++|... +++ +++|+|+|||||||+++.|...+
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeE
Confidence 45666543 467 99999999999999999999544
No 478
>PRK02496 adk adenylate kinase; Provisional
Probab=97.60 E-value=0.00012 Score=71.65 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..|.|.|++||||||+++.|+..+ +...++.++.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~-~~~~i~~~~~ 35 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL-HIPHISTGDI 35 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCcEEEhHHH
Confidence 358899999999999999999876 3445665543
No 479
>PRK14530 adenylate kinase; Provisional
Probab=97.59 E-value=9.4e-05 Score=74.50 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~ 37 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHH
Confidence 69999999999999999999987 4556666654
No 480
>PRK00625 shikimate kinase; Provisional
Probab=97.57 E-value=7.4e-05 Score=73.63 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|.|+|..||||||+++.|+..+ +...+++|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhhHH
Confidence 48899999999999999999987 4557888765
No 481
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=97.56 E-value=0.00027 Score=68.91 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=74.3
Q ss_pred ceeeeecCCCCCCcccccceEEEe--ecCCeEEEEEeeeecCCCceeeeeeEEEeehhhH------------HHHhhcCC
Q 006094 279 ETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL------------GGLMALGY 344 (661)
Q Consensus 279 ~~~DIYl~pP~~df~~tde~LRvR--~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v~~~------------~gL~~LGf 344 (661)
...|+||..|.... .+..+|+| ..++.+.+|+|++... ..+++.++.|+.... ..+..+|+
T Consensus 33 ~~~~~YfDT~d~~l--~~~~lrlR~r~~~~~~~~TlK~~~~~---~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~~~l 107 (174)
T cd07374 33 QLRAIYFDTPDLRL--ARAGLRLRRRTGGADAGWHLKLPGGI---SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRGLPL 107 (174)
T ss_pred eeeeeEecCccchh--hhCCcEEEEEcCCCccEEEEEccCCC---CCceEEEeecCCccCCcccccchhheeeecCCCCc
Confidence 34599998887643 34555555 4556999999998765 458888888873222 34567899
Q ss_pred eEEEEEEeeeeeeeeC-----CEEEEeecccc-------cCcceEEEEec
Q 006094 345 TIATILKRSSHIFYDD-----RVCVKTDWLEQ-------LNRKYVQVQGR 382 (661)
Q Consensus 345 ~~~a~V~R~re~y~~g-----~~~i~lD~ve~-------Lg~~FveI~g~ 382 (661)
++++.+.+.|..|..+ .+.|++|.++. .+ .|||++-.
T Consensus 108 ~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~-~e~E~El~ 156 (174)
T cd07374 108 RPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQ-YWREVEVE 156 (174)
T ss_pred eEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcce-EEEEEEEE
Confidence 9999999999999876 49999999998 55 89999443
No 482
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.51 E-value=2.4e-05 Score=79.18 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH-HHH---HHHHhhcccchhhccCCCCCCceEEE
Q 006094 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EII---HQISETVYPMYKAFIEPDLQTAHIKI 237 (661)
Q Consensus 177 llDlkIfVdad~diRLiRRI~RDi~eRG~s~E-eVi---~q~~~~v~P~~~~fIeP~k~~ADIII 237 (661)
.-|+.||++++.++ +.+++..||++.| ... ..|.+.....|..|++-.-..-++.|
T Consensus 126 ~PdllIyLd~~~e~-----~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i 185 (216)
T COG1428 126 RPDLLIYLDASLET-----LLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGI 185 (216)
T ss_pred CCCEEEEEeCCHHH-----HHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeee
Confidence 67999999999766 4445566788887 222 23666666667777665444445555
No 483
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.50 E-value=0.00028 Score=66.62 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp 91 (661)
+|+|+|||||||||+++.|++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999874
No 484
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00039 Score=73.89 Aligned_cols=137 Identities=23% Similarity=0.249 Sum_probs=86.7
Q ss_pred ccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C-CceEEecCCccccc------ccccc--ccCCCCCCchhhH
Q 006094 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P-SIAVITMDNYNDSS------RIIDG--NFDDPRLTDYDTL 123 (661)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll---p-~~g~I~lD~~~~~~------~~i~~--~fq~p~~~d~~tl 123 (661)
++...+.-+++.+|||+|+.|+|||||...|...+ + .+++|.+|--.... ..+.+ .--+|+.|
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vF----- 115 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVF----- 115 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeE-----
Confidence 33445555667799999999999999999999887 2 47788877532110 00000 00012221
Q ss_pred HHHHHhhhcccccccccccccccccc--c---------cceeeccCccEEEEEehhhhhc--cccCCCCEEEEEEcCchh
Q 006094 124 LENIRGLKEGKAVQVPIYDFKSSSRI--G---------YRTLEVPSSRIVIIEGIYALSE--KLRPLIDLRVSVTGGVHF 190 (661)
Q Consensus 124 ~enL~~L~~g~~I~~P~yd~~~~~r~--~---------~~~~~v~~a~VVIVEGilaL~d--eLr~llDlkIfVdad~di 190 (661)
-+....+- + -........++||+|-.-+... ++.+++|..++|..|.
T Consensus 116 ------------------iRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg-- 175 (323)
T COG1703 116 ------------------IRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG-- 175 (323)
T ss_pred ------------------EeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC--
Confidence 11111110 0 0123457789999998888763 6889999999999884
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCCC
Q 006094 191 DLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (661)
Q Consensus 191 RLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p~ 244 (661)
.|-+.+.+..-++ +.||+++.|++|..
T Consensus 176 ------------~GD~~Q~iK~Gim---------------EiaDi~vINKaD~~ 202 (323)
T COG1703 176 ------------AGDDLQGIKAGIM---------------EIADIIVINKADRK 202 (323)
T ss_pred ------------CCcHHHHHHhhhh---------------hhhheeeEeccChh
Confidence 3555555555552 56899999999853
No 485
>PRK14528 adenylate kinase; Provisional
Probab=97.50 E-value=0.00025 Score=70.25 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..|.|.||+||||||+++.|+..+ +...++.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~-~~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL-SIPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCeeeCCHH
Confidence 368999999999999999999887 3446666654
No 486
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.50 E-value=2.1e-05 Score=78.95 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=55.9
Q ss_pred EEEEECCCCCcHHHHHHHHH----HhC-CCceEEecCCc----cccccccccccCCCC-----CCchhhHHHHHHhhhcc
Q 006094 68 LVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNY----NDSSRIIDGNFDDPR-----LTDYDTLLENIRGLKEG 133 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La----~ll-p~~g~I~lD~~----~~~~~~i~~~fq~p~-----~~d~~tl~enL~~L~~g 133 (661)
+++|.|+||||||||+++|. +.. ++.+.+..+.. ......+.+.|+++. .....++.+++.....+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 89999999999999999996 333 33333321111 112234566777662 22222555555322111
Q ss_pred ccccccccccccccccccceee------ccCccEEEEEehhhhhccccCCCCE
Q 006094 134 KAVQVPIYDFKSSSRIGYRTLE------VPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 134 ~~I~~P~yd~~~~~r~~~~~~~------v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+ +. ..++......+.++... +...+.++..+.+++.||+...+|.
T Consensus 104 ~-~~-~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 104 E-SN-WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred H-HH-HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 1 10 01122222333333221 3344455556666666777776665
No 487
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00061 Score=67.30 Aligned_cols=111 Identities=20% Similarity=0.355 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCC---CCCCchhhHHHHHHhhhccccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDD---PRLTDYDTLLENIRGLKEGKAVQVPIYDFK 144 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~---p~~~d~~tl~enL~~L~~g~~I~~P~yd~~ 144 (661)
.|+|+|.+|.||||+++.|. .+ +.-.+++..+.... ....-++. .-..|.+.+...+..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l-g~~~i~l~el~~e~-~~~~~~de~r~s~~vD~d~~~~~le~~~------------- 65 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL-GYKVIELNELAKEN-GLYTEYDELRKSVIVDVDKLRKRLEELL------------- 65 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh-CCceeeHHHHHHhc-CCeeccCCccceEEeeHHHHHHHHHHHh-------------
Confidence 69999999999999999999 44 33455555431110 00011111 12245555555554321
Q ss_pred cccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 145 ~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
...-.|+|+.+.- +.+.+|+.|-+.+++.. +..+++.||++++.|.....
T Consensus 66 -------------~~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~-----L~~RLk~RGy~~eKI~ENve 115 (180)
T COG1936 66 -------------REGSGIVDSHLSH---LLPDCDLVVVLRADPEV-----LYERLKGRGYSEEKILENVE 115 (180)
T ss_pred -------------ccCCeEeechhhh---cCCCCCEEEEEcCCHHH-----HHHHHHHcCCCHHHHHHHHH
Confidence 1234577777753 55589999999999765 34456678999988876553
No 488
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.49 E-value=0.00011 Score=69.04 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
|.|+|++||||||+++.|+..+ +...++.|.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l-~~~~~~~d~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVDLDEL 33 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-CCCEEEchHH
Confidence 7899999999999999999887 3446666654
No 489
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.49 E-value=0.00029 Score=69.16 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.+|+|.|+.||||||+++.|+..+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999873
No 490
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=97.48 E-value=0.00078 Score=67.86 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=84.8
Q ss_pred cceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecC-CCceeeeeeEEEeehhh-----------HHHHhhc---
Q 006094 278 EETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTD-SPFIISPRITFEVSVRL-----------LGGLMAL--- 342 (661)
Q Consensus 278 ~~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d-~~fi~rp~~ef~V~v~~-----------~~gL~~L--- 342 (661)
....++||..|..++...+-+||+|..++++.+|+|+|... .....|++.+.+|+... ...+.++
T Consensus 33 ~~l~~~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~R~E~e~~l~~~~~~l~~~~~~~~~~~~~~l~~~ 112 (197)
T cd07756 33 RRLHNTYFDTPDLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQRPEWEVPLPGPAPDLDLASILPDGELLEALAAL 112 (197)
T ss_pred eeeeeeeeeCcChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCcccceeEcccCCCCCcCcchhhcCCcccCHhhhhcc
Confidence 34559999999999999999999999999999999988632 33457888888887322 2334555
Q ss_pred -CCeEEEEEEeeeeeeeeC----CEEEEeec--ccccC--cceEEE----EeccHHHHHHHHHH
Q 006094 343 -GYTIATILKRSSHIFYDD----RVCVKTDW--LEQLN--RKYVQV----QGRDRLYVKYVGEQ 393 (661)
Q Consensus 343 -Gf~~~a~V~R~re~y~~g----~~~i~lD~--ve~Lg--~~FveI----~g~~~~~V~~~~~~ 393 (661)
++.++..+...|+.|... .+.|++|. |..=+ ..+-|| +....+.+.++|.+
T Consensus 113 ~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~ 176 (197)
T cd07756 113 AALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARR 176 (197)
T ss_pred CCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHH
Confidence 599999999999999874 49999999 44322 346555 33344455555444
No 491
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.48 E-value=4.4e-05 Score=76.59 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=43.8
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHH
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~ 128 (661)
.+.+++++.. ++ +++|+||||||||||++.|++.. .+...|.+.+.. .+.||....|...++.+++.
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~----~l~~~G~~v~a~--~~~~q~~~l~~~~~~~d~l~ 81 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNV----ILAQAGAPVCAS--SFELPPVKIFTSIRVSDDLR 81 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHH----HHHHcCCEEecC--ccCcccceEEEeccchhccc
Confidence 4677777665 46 99999999999999999998753 122233322221 24555455666666666654
No 492
>PLN02772 guanylate kinase
Probab=97.47 E-value=0.00066 Score=74.90 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCC-ce-EEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccc
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS-IA-VITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp~-~g-~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~ 140 (661)
++...+|.|+||||+||+||++.|...+|. .+ .++. ....++.....-.+......+.+ -..+..+..+++-.
T Consensus 132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vsh--TTR~pR~gE~dG~dY~Fvs~eeF---e~~i~~g~FlE~~e 206 (398)
T PLN02772 132 GNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPREMEKDGVHYHFTERSVM---EKEIKDGKFLEFAS 206 (398)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccc--cCCCCcccccCCceEeeCCHHHH---HHHHHhCccceeee
Confidence 344569999999999999999999887642 11 2221 11111110000011111111222 22334566666554
Q ss_pred ccc-ccccccccceeeccCccEEEEE----ehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC-CHHHHHHHH
Q 006094 141 YDF-KSSSRIGYRTLEVPSSRIVIIE----GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQI 214 (661)
Q Consensus 141 yd~-~~~~r~~~~~~~v~~a~VVIVE----GilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~-s~EeVi~q~ 214 (661)
|.- ..+.....-...+...+++|++ |...+.... ..-+.||+.++....+.+|+ ..||. +.+++.+++
T Consensus 207 ~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL----~~RGteseE~I~kRL 280 (398)
T PLN02772 207 VHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASS--LEAIFIFICPPSMEELEKRL----RARGTETEEQIQKRL 280 (398)
T ss_pred ecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHH----HhcCCCCHHHHHHHH
Confidence 322 2222211111112444566654 333333221 12377788777655555544 34565 556666666
Q ss_pred HhhcccchhhccCCCCCCceEEEECC
Q 006094 215 SETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
..... .... .......|++|.|+
T Consensus 281 ~~A~~-Ei~~--~~~~~~fD~vIvND 303 (398)
T PLN02772 281 RNAEA-ELEQ--GKSSGIFDHILYND 303 (398)
T ss_pred HHHHH-HHhh--ccccCCCCEEEECC
Confidence 43211 1100 01124579999987
No 493
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.46 E-value=0.001 Score=65.19 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=27.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC--CCceEEecCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD~ 100 (661)
+.+|+|+|++||||||+++.|.+.+ ++.+.+.+++
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3499999999999999999999987 2333555554
No 494
>PRK12338 hypothetical protein; Provisional
Probab=97.45 E-value=0.00022 Score=76.71 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.|.+|.|+|++||||||+++.|+..++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 467999999999999999999999984
No 495
>PRK14532 adenylate kinase; Provisional
Probab=97.43 E-value=0.00044 Score=67.80 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=26.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-g~~~is~~d~ 34 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-GMVQLSTGDM 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEeCcHH
Confidence 7889999999999999999987 4556776654
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.42 E-value=0.00047 Score=66.91 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++|+|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 497
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.41 E-value=0.00016 Score=71.01 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=38.6
Q ss_pred CCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH-HHHHHHhhcccchhhccCC-CCCCceEEEECC
Q 006094 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE-IIHQISETVYPMYKAFIEP-DLQTAHIKIINK 240 (661)
Q Consensus 176 ~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee-Vi~q~~~~v~P~~~~fIeP-~k~~ADIII~N~ 240 (661)
...|..||++++.++++.| + .+||+..+. ....|...+...|+.+..+ .+..+.+++.|.
T Consensus 123 ~~pd~~i~l~~~~~~~~~R-i----~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~ 184 (193)
T cd01673 123 LPPDLVIYLDASPETCLKR-I----KKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDA 184 (193)
T ss_pred CCCCEEEEEeCCHHHHHHH-H----HhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEC
Confidence 3579999999999987544 3 234554442 2245667778888888765 233456666543
No 498
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.40 E-value=0.00025 Score=74.15 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=62.2
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCccccc------ccccc--ccCCCCCCchh-hHHHHH
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS------RIIDG--NFDDPRLTDYD-TLLENI 127 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~~~~~------~~i~~--~fq~p~~~d~~-tl~enL 127 (661)
++.++..+|||+||.|+|||||...|...+ ..++++.+|--.... ..+.+ ...+|+.|=.- .-..++
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 344557899999999999999999999886 257888887542110 01111 11222222100 000000
Q ss_pred HhhhccccccccccccccccccccceeeccCccEEEEEehhhhhc--cccCCCCEEEEEEcCc
Q 006094 128 RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE--KLRPLIDLRVSVTGGV 188 (661)
Q Consensus 128 ~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d--eLr~llDlkIfVdad~ 188 (661)
..+. ..+.. .-........++|++|-.-.... ++.+.+|..++|-.|.
T Consensus 104 GGls-----------~~t~~--~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 104 GGLS-----------RATRD--AVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHHH-----------HHHHH--HHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred CCcc-----------HhHHH--HHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 0000 00000 00123456789999998877763 6889999999998884
No 499
>PRK14527 adenylate kinase; Provisional
Probab=97.39 E-value=0.00024 Score=70.11 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|.|.||+||||||+++.|+..+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999999999876
No 500
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.39 E-value=0.00011 Score=81.63 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=29.1
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceE
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV 95 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~ 95 (661)
.+..|| +|||.||||-|||||++.|++.+ |+.|.
T Consensus 363 ~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 363 EIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeecce---EEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 344556 99999999999999999999998 77665
Done!