Query 006094
Match_columns 661
No_of_seqs 505 out of 3241
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 1.7E-23 6E-28 221.3 15.0 193 48-240 71-308 (321)
2 1sq5_A Pantothenate kinase; P- 99.9 2.5E-23 8.4E-28 217.6 8.6 202 31-242 35-298 (308)
3 3asz_A Uridine kinase; cytidin 99.9 2.7E-21 9.1E-26 188.7 13.7 175 67-242 7-189 (211)
4 2jeo_A Uridine-cytidine kinase 99.8 6.1E-21 2.1E-25 192.1 14.2 191 45-240 7-215 (245)
5 3c8u_A Fructokinase; YP_612366 99.8 4.6E-21 1.6E-25 188.2 12.8 169 67-238 23-206 (208)
6 3aez_A Pantothenate kinase; tr 99.8 3.8E-21 1.3E-25 202.3 9.9 203 31-242 41-301 (312)
7 1a7j_A Phosphoribulokinase; tr 99.8 2.9E-21 9.9E-26 201.0 4.8 176 65-241 4-216 (290)
8 1uj2_A Uridine-cytidine kinase 99.8 1.4E-19 4.7E-24 182.9 13.0 174 64-238 20-211 (252)
9 1yem_A Hypothetical protein; s 99.8 1.3E-18 4.4E-23 169.8 15.1 144 261-413 18-174 (179)
10 2ga8_A Hypothetical 39.9 kDa p 99.8 8.9E-20 3.1E-24 195.1 5.9 143 94-238 157-349 (359)
11 3ghx_A Adenylate cyclase CYAB; 99.8 2.3E-18 7.7E-23 168.0 14.8 141 262-409 20-177 (179)
12 2een_A Hypothetical protein PH 99.8 2.8E-18 9.6E-23 166.9 15.2 148 263-414 12-178 (183)
13 1odf_A YGR205W, hypothetical 3 99.8 3.4E-18 1.2E-22 178.2 14.5 175 63-240 28-276 (290)
14 1rz3_A Hypothetical protein rb 99.7 8.3E-19 2.8E-23 171.5 5.4 168 65-241 21-201 (201)
15 3tui_C Methionine import ATP-b 99.7 2.1E-19 7.3E-24 193.1 -2.7 158 20-180 11-196 (366)
16 3n10_A Adenylate cyclase 2; CY 99.7 3.3E-16 1.1E-20 151.7 15.5 140 263-409 21-177 (179)
17 2dc4_A PH1012 protein, 165AA l 99.7 3.8E-16 1.3E-20 149.3 15.6 140 262-409 11-163 (165)
18 3fvq_A Fe(3+) IONS import ATP- 99.6 1.4E-16 4.9E-21 170.8 3.2 142 32-180 3-171 (359)
19 2aca_A Putative adenylate cycl 99.6 2.3E-15 7.7E-20 147.7 10.8 143 262-412 22-181 (189)
20 3rlf_A Maltose/maltodextrin im 99.6 3.2E-16 1.1E-20 169.3 1.8 141 33-180 3-166 (381)
21 3tif_A Uncharacterized ABC tra 99.6 1.5E-15 5.1E-20 153.3 5.6 145 33-180 1-178 (235)
22 3gfo_A Cobalt import ATP-bindi 99.6 1.8E-15 6.1E-20 156.7 5.7 143 32-180 6-176 (275)
23 2yyz_A Sugar ABC transporter, 99.5 1.6E-15 5.6E-20 162.6 3.0 141 33-180 3-166 (359)
24 1g29_1 MALK, maltose transport 99.5 1.9E-15 6.6E-20 162.7 2.8 141 33-180 3-172 (372)
25 2pcj_A ABC transporter, lipopr 99.5 4.7E-15 1.6E-19 148.6 5.2 142 32-180 3-173 (224)
26 1g6h_A High-affinity branched- 99.5 1.6E-14 5.5E-19 147.5 8.9 142 32-180 6-186 (257)
27 1v43_A Sugar-binding transport 99.5 2.1E-15 7.2E-20 162.5 2.3 141 33-180 11-174 (372)
28 2it1_A 362AA long hypothetical 99.5 2.4E-15 8.1E-20 161.6 1.5 141 33-180 3-166 (362)
29 3d31_A Sulfate/molybdate ABC t 99.5 2.6E-15 8.7E-20 160.5 1.1 140 33-180 1-160 (348)
30 2ihy_A ABC transporter, ATP-bi 99.5 9.3E-15 3.2E-19 151.5 5.1 148 26-180 14-194 (279)
31 2olj_A Amino acid ABC transpor 99.5 1.2E-14 4.3E-19 149.4 5.8 142 32-180 23-192 (263)
32 1vpl_A ABC transporter, ATP-bi 99.5 1.1E-14 3.9E-19 149.0 5.2 142 32-180 14-179 (256)
33 1b0u_A Histidine permease; ABC 99.5 1.1E-14 3.9E-19 149.2 5.2 142 32-180 5-186 (262)
34 1z47_A CYSA, putative ABC-tran 99.5 6.5E-15 2.2E-19 157.8 2.9 146 29-180 10-178 (355)
35 1ji0_A ABC transporter; ATP bi 99.5 2.2E-14 7.4E-19 145.2 5.6 142 32-180 5-172 (240)
36 1oxx_K GLCV, glucose, ABC tran 99.5 1.3E-14 4.3E-19 155.4 3.9 141 33-180 3-173 (353)
37 4i1u_A Dephospho-COA kinase; s 99.5 4.2E-14 1.4E-18 141.4 7.1 162 65-243 8-188 (210)
38 2qt1_A Nicotinamide riboside k 99.5 6.5E-14 2.2E-18 136.4 7.8 167 60-241 15-190 (207)
39 2yz2_A Putative ABC transporte 99.4 4.1E-14 1.4E-18 145.3 5.7 145 33-180 2-171 (266)
40 4g1u_C Hemin import ATP-bindin 99.4 5E-14 1.7E-18 145.0 5.6 142 32-180 10-180 (266)
41 2grj_A Dephospho-COA kinase; T 99.4 6.4E-14 2.2E-18 137.6 6.0 150 64-243 10-173 (192)
42 1sgw_A Putative ABC transporte 99.4 4.9E-14 1.7E-18 140.8 4.8 141 32-180 9-166 (214)
43 3nh6_A ATP-binding cassette SU 99.4 2.2E-14 7.7E-19 150.7 2.0 170 4-180 17-223 (306)
44 2d2e_A SUFC protein; ABC-ATPas 99.4 1.2E-13 4E-18 140.6 6.5 141 33-180 3-176 (250)
45 2f6r_A COA synthase, bifunctio 99.4 1.6E-13 5.3E-18 141.7 7.0 167 63-243 72-255 (281)
46 2onk_A Molybdate/tungstate ABC 99.4 2.2E-13 7.5E-18 138.2 6.2 138 33-180 1-159 (240)
47 2zu0_C Probable ATP-dependent 99.4 2.7E-13 9.1E-18 139.4 4.5 143 31-180 18-197 (267)
48 2nq2_C Hypothetical ABC transp 99.4 2.7E-13 9.3E-18 138.4 4.5 136 32-180 3-161 (253)
49 2ff7_A Alpha-hemolysin translo 99.3 3.6E-13 1.2E-17 137.0 5.1 141 34-180 8-178 (247)
50 2ixe_A Antigen peptide transpo 99.3 2.2E-13 7.6E-18 140.4 3.2 145 31-180 14-189 (271)
51 2qi9_C Vitamin B12 import ATP- 99.3 3.1E-13 1E-17 137.9 3.0 137 32-180 3-166 (249)
52 2pze_A Cystic fibrosis transme 99.3 4.6E-13 1.6E-17 134.5 4.0 138 31-180 4-163 (229)
53 1mv5_A LMRA, multidrug resista 99.3 2.2E-13 7.7E-18 137.8 1.6 141 33-180 1-172 (243)
54 1jjv_A Dephospho-COA kinase; P 99.3 6.9E-13 2.4E-17 128.8 4.7 161 66-243 2-179 (206)
55 3gd7_A Fusion complex of cysti 99.3 1.9E-13 6.3E-18 148.2 -0.8 143 32-180 18-188 (390)
56 2ghi_A Transport protein; mult 99.3 1E-12 3.5E-17 134.6 3.6 144 32-180 16-188 (260)
57 4a82_A Cystic fibrosis transme 99.3 5.5E-13 1.9E-17 150.7 1.3 166 9-180 308-510 (578)
58 3b5x_A Lipid A export ATP-bind 99.3 5.5E-13 1.9E-17 150.8 0.7 167 8-180 311-513 (582)
59 4e22_A Cytidylate kinase; P-lo 99.3 7E-13 2.4E-17 134.4 1.3 83 158-241 144-228 (252)
60 2cbz_A Multidrug resistance-as 99.2 7.5E-13 2.6E-17 133.7 0.8 136 33-180 3-160 (237)
61 1cke_A CK, MSSA, protein (cyti 99.2 2E-12 7E-17 126.7 3.8 81 158-240 122-205 (227)
62 3b60_A Lipid A export ATP-bind 99.2 1.4E-12 4.9E-17 147.4 2.6 166 9-180 312-513 (582)
63 2pjz_A Hypothetical protein ST 99.2 3.4E-12 1.2E-16 131.2 5.0 142 33-180 1-161 (263)
64 3qf4_B Uncharacterized ABC tra 99.2 1.3E-12 4.3E-17 148.4 -0.8 165 9-180 324-524 (598)
65 3bhd_A Thtpase, thiamine triph 99.2 1.6E-10 5.5E-15 116.9 13.4 133 279-417 53-223 (234)
66 2if2_A Dephospho-COA kinase; a 99.2 1.5E-11 5.1E-16 119.0 5.5 159 67-242 2-177 (204)
67 2yl4_A ATP-binding cassette SU 99.2 4.8E-12 1.7E-16 143.4 2.4 166 10-180 310-516 (595)
68 3qf4_A ABC transporter, ATP-bi 99.2 2.8E-12 9.7E-17 145.3 -0.1 166 9-180 310-512 (587)
69 1vht_A Dephospho-COA kinase; s 99.1 1.3E-10 4.4E-15 113.9 10.2 162 65-243 3-181 (218)
70 1q3t_A Cytidylate kinase; nucl 99.1 8.1E-11 2.8E-15 117.3 7.5 82 158-241 134-218 (236)
71 2bbs_A Cystic fibrosis transme 99.1 1.5E-11 5.2E-16 128.1 1.5 151 14-180 17-192 (290)
72 3tr0_A Guanylate kinase, GMP k 99.1 2.9E-11 9.8E-16 116.5 3.2 160 57-240 1-171 (205)
73 3d3q_A TRNA delta(2)-isopenten 99.1 1.6E-11 5.3E-16 130.9 1.3 153 67-228 8-163 (340)
74 3g5u_A MCG1178, multidrug resi 99.1 1.7E-11 5.7E-16 150.3 1.7 167 9-180 355-559 (1284)
75 1uf9_A TT1252 protein; P-loop, 99.1 3.9E-11 1.3E-15 115.1 3.4 161 64-241 6-178 (203)
76 3r20_A Cytidylate kinase; stru 99.1 2.6E-10 8.9E-15 115.5 9.1 79 160-239 129-209 (233)
77 4f4c_A Multidrug resistance pr 99.0 4E-12 1.4E-16 156.2 -6.8 166 10-180 1046-1250(1321)
78 4f4c_A Multidrug resistance pr 99.0 1.5E-11 5E-16 151.2 -1.9 168 8-180 382-587 (1321)
79 2h92_A Cytidylate kinase; ross 99.0 6.5E-10 2.2E-14 108.6 9.7 81 159-241 118-201 (219)
80 3g5u_A MCG1178, multidrug resi 99.0 4.8E-11 1.6E-15 146.3 2.0 166 10-180 999-1204(1284)
81 3ake_A Cytidylate kinase; CMP 99.0 1.8E-10 6.2E-15 110.9 4.7 73 160-241 119-192 (208)
82 1z6g_A Guanylate kinase; struc 99.0 4.8E-10 1.6E-14 111.1 7.7 169 51-240 11-192 (218)
83 2j41_A Guanylate kinase; GMP, 99.0 2.4E-10 8.4E-15 109.9 4.1 161 59-240 2-171 (207)
84 3a00_A Guanylate kinase, GMP k 98.9 1.3E-09 4.4E-14 104.8 6.8 157 68-240 3-169 (186)
85 2vp4_A Deoxynucleoside kinase; 98.9 2.4E-11 8.3E-16 121.0 -6.4 168 60-243 17-211 (230)
86 3lw7_A Adenylate kinase relate 98.8 6.5E-10 2.2E-14 102.7 2.2 157 67-243 2-163 (179)
87 3lnc_A Guanylate kinase, GMP k 98.8 1.7E-10 5.8E-15 114.3 -1.9 38 51-91 15-53 (231)
88 1yqt_A RNAse L inhibitor; ATP- 98.8 2.3E-09 8E-14 120.4 5.5 135 32-180 286-434 (538)
89 3t61_A Gluconokinase; PSI-biol 98.8 6.7E-09 2.3E-13 100.4 7.2 139 66-243 18-166 (202)
90 3tj7_A GBAA_1210 protein; stru 98.8 6.3E-08 2.1E-12 95.6 14.2 118 279-400 35-178 (195)
91 3bk7_A ABC transporter ATP-bin 98.8 1.7E-09 5.9E-14 123.3 3.2 135 32-180 356-504 (607)
92 3ozx_A RNAse L inhibitor; ATP 98.8 2.9E-09 9.9E-14 119.8 4.6 136 32-180 268-418 (538)
93 1htw_A HI0065; nucleotide-bind 98.8 3.5E-10 1.2E-14 107.7 -2.5 78 48-129 18-97 (158)
94 4eun_A Thermoresistant glucoki 98.7 6.3E-09 2.2E-13 100.9 5.3 62 60-125 26-91 (200)
95 1yqt_A RNAse L inhibitor; ATP- 98.7 2.4E-09 8.2E-14 120.3 1.4 133 43-180 27-191 (538)
96 1s96_A Guanylate kinase, GMP k 98.7 1.4E-08 4.9E-13 101.3 6.8 161 59-240 12-182 (219)
97 3vaa_A Shikimate kinase, SK; s 98.7 1.1E-08 3.7E-13 99.2 5.0 50 48-101 10-59 (199)
98 3bk7_A ABC transporter ATP-bin 98.6 4.3E-09 1.5E-13 120.0 0.8 164 33-207 83-281 (607)
99 1knq_A Gluconate kinase; ALFA/ 98.6 6.3E-08 2.1E-12 91.2 8.5 34 67-101 9-42 (175)
100 2qor_A Guanylate kinase; phosp 98.6 7E-08 2.4E-12 93.8 8.8 162 67-240 13-181 (204)
101 1kgd_A CASK, peripheral plasma 98.6 4.8E-08 1.6E-12 93.4 7.4 149 68-240 7-163 (180)
102 3ux8_A Excinuclease ABC, A sub 98.6 5.5E-09 1.9E-13 119.9 0.4 148 50-207 31-257 (670)
103 3nwj_A ATSK2; P loop, shikimat 98.6 8.1E-09 2.8E-13 105.4 0.5 63 32-101 16-82 (250)
104 3v85_A CYTH-like phosphatase; 98.6 4.1E-07 1.4E-11 90.0 12.4 122 278-399 30-194 (210)
105 2gfg_A BH2851; antiparallel ba 98.5 1.5E-06 5E-11 85.2 16.0 125 280-409 36-186 (193)
106 1tev_A UMP-CMP kinase; ploop, 98.5 2.1E-08 7.2E-13 94.9 2.3 125 66-200 3-136 (196)
107 1y63_A LMAJ004144AAA protein; 98.5 2.8E-07 9.6E-12 88.2 9.4 44 55-101 2-45 (184)
108 1qf9_A UMP/CMP kinase, protein 98.5 1.6E-07 5.4E-12 88.7 7.5 35 66-101 6-40 (194)
109 3j16_B RLI1P; ribosome recycli 98.5 3.2E-08 1.1E-12 112.9 2.7 125 50-180 360-500 (608)
110 1ex7_A Guanylate kinase; subst 98.5 5.2E-07 1.8E-11 88.2 10.7 162 68-240 3-169 (186)
111 1ukz_A Uridylate kinase; trans 98.5 1.1E-06 3.8E-11 84.5 12.6 37 64-101 13-49 (203)
112 3tau_A Guanylate kinase, GMP k 98.4 1.8E-07 6.3E-12 91.5 6.0 28 61-91 6-33 (208)
113 2iw3_A Elongation factor 3A; a 98.4 5.7E-08 2E-12 115.8 2.3 128 43-180 441-581 (986)
114 2jaq_A Deoxyguanosine kinase; 98.4 9.5E-08 3.2E-12 91.2 2.3 61 176-241 123-185 (205)
115 2v9p_A Replication protein E1; 98.3 3.4E-08 1.2E-12 103.7 -1.8 80 9-98 72-156 (305)
116 3kb2_A SPBC2 prophage-derived 98.3 7.9E-07 2.7E-11 82.5 7.6 34 67-101 2-35 (173)
117 1znw_A Guanylate kinase, GMP k 98.3 1.4E-07 4.9E-12 92.0 2.1 70 48-123 7-81 (207)
118 2bwj_A Adenylate kinase 5; pho 98.3 6.2E-08 2.1E-12 92.4 -0.5 35 66-101 12-46 (199)
119 2dpy_A FLII, flagellum-specifi 98.3 2.3E-07 7.9E-12 101.8 2.9 91 32-129 130-237 (438)
120 3b9q_A Chloroplast SRP recepto 98.3 4.2E-07 1.4E-11 95.0 4.3 73 54-129 91-178 (302)
121 2qm8_A GTPase/ATPase; G protei 98.3 1.7E-07 5.8E-12 99.3 1.2 127 33-187 29-178 (337)
122 2cdn_A Adenylate kinase; phosp 98.3 2.1E-06 7.3E-11 82.7 8.9 37 64-101 18-54 (201)
123 2iw3_A Elongation factor 3A; a 98.2 4.7E-07 1.6E-11 108.0 4.9 76 31-115 669-745 (986)
124 1lvg_A Guanylate kinase, GMP k 98.2 5.5E-06 1.9E-10 80.5 11.5 24 68-91 6-29 (198)
125 3j16_B RLI1P; ribosome recycli 98.2 1.3E-07 4.3E-12 108.0 -0.2 60 33-96 69-134 (608)
126 1zuh_A Shikimate kinase; alpha 98.2 6.4E-07 2.2E-11 83.8 4.5 35 66-101 7-41 (168)
127 2npi_A Protein CLP1; CLP1-PCF1 98.2 1E-07 3.5E-12 105.3 -1.4 73 31-118 116-191 (460)
128 2gza_A Type IV secretion syste 98.2 3.8E-07 1.3E-11 97.4 2.6 75 53-130 165-248 (361)
129 3ux8_A Excinuclease ABC, A sub 98.1 2.4E-07 8.4E-12 106.3 -0.6 35 50-87 335-369 (670)
130 2og2_A Putative signal recogni 98.1 1.2E-06 4.2E-11 93.8 4.7 73 54-129 148-235 (359)
131 2yhs_A FTSY, cell division pro 98.1 1.3E-06 4.5E-11 97.3 4.8 75 53-130 283-371 (503)
132 3dl0_A Adenylate kinase; phosp 98.1 6.6E-07 2.2E-11 87.1 1.6 33 68-101 2-34 (216)
133 3ney_A 55 kDa erythrocyte memb 98.1 1.2E-05 4.2E-10 79.3 10.6 122 62-189 18-142 (197)
134 2c95_A Adenylate kinase 1; tra 98.1 3.3E-06 1.1E-10 80.2 6.2 36 65-101 8-43 (196)
135 3ozx_A RNAse L inhibitor; ATP 98.1 3.6E-07 1.2E-11 102.8 -1.0 117 60-180 22-171 (538)
136 3cm0_A Adenylate kinase; ATP-b 98.1 5.9E-06 2E-10 78.1 7.3 34 66-100 4-37 (186)
137 2obl_A ESCN; ATPase, hydrolase 98.1 1.4E-06 4.8E-11 92.9 3.2 63 32-101 44-107 (347)
138 2pt5_A Shikimate kinase, SK; a 98.1 2.1E-07 7.1E-12 86.7 -2.8 33 68-101 2-34 (168)
139 3fb4_A Adenylate kinase; psych 98.0 2E-06 6.7E-11 83.6 3.4 33 68-101 2-34 (216)
140 1rj9_A FTSY, signal recognitio 98.0 3.9E-06 1.3E-10 87.9 5.8 64 66-129 102-179 (304)
141 3euj_A Chromosome partition pr 98.0 1.6E-06 5.5E-11 96.3 2.7 49 50-102 17-66 (483)
142 4eaq_A DTMP kinase, thymidylat 98.0 3.3E-05 1.1E-09 77.1 11.8 39 53-91 13-51 (229)
143 3trf_A Shikimate kinase, SK; a 98.0 7.7E-07 2.6E-11 84.2 -0.4 35 66-101 5-39 (185)
144 3sop_A Neuronal-specific septi 98.0 8.5E-07 2.9E-11 91.2 -0.3 61 67-127 3-68 (270)
145 3fdi_A Uncharacterized protein 98.0 9.8E-06 3.4E-10 79.5 7.2 58 179-240 118-181 (201)
146 4gp7_A Metallophosphoesterase; 98.0 1.7E-06 5.7E-11 82.2 1.4 30 55-87 1-30 (171)
147 2pt7_A CAG-ALFA; ATPase, prote 97.9 1.3E-06 4.6E-11 92.2 0.1 48 52-102 160-208 (330)
148 1e6c_A Shikimate kinase; phosp 97.9 7.5E-07 2.6E-11 83.1 -1.7 34 67-101 3-36 (173)
149 2rhm_A Putative kinase; P-loop 97.9 9.4E-06 3.2E-10 76.8 5.9 36 65-101 4-39 (193)
150 2plr_A DTMP kinase, probable t 97.9 1.3E-05 4.5E-10 76.7 6.9 26 66-91 4-29 (213)
151 2pbr_A DTMP kinase, thymidylat 97.9 8.3E-06 2.8E-10 77.0 5.2 32 68-99 2-35 (195)
152 3iij_A Coilin-interacting nucl 97.9 1.2E-05 4.1E-10 75.9 6.0 34 67-101 12-45 (180)
153 2iyv_A Shikimate kinase, SK; t 97.9 1.1E-06 3.8E-11 83.2 -1.4 34 67-101 3-36 (184)
154 3hdt_A Putative kinase; struct 97.9 9.1E-06 3.1E-10 81.5 5.0 25 66-90 14-38 (223)
155 2fbl_A Hypothetical protein NE 97.9 3.8E-05 1.3E-09 73.0 9.0 93 281-385 26-122 (153)
156 1zp6_A Hypothetical protein AT 97.9 7.6E-06 2.6E-10 77.6 3.9 38 60-101 6-43 (191)
157 2eyu_A Twitching motility prot 97.8 2.6E-06 8.9E-11 87.1 0.6 46 51-101 15-62 (261)
158 1nn5_A Similar to deoxythymidy 97.8 4.8E-05 1.7E-09 73.1 9.6 25 66-90 9-33 (215)
159 1nks_A Adenylate kinase; therm 97.8 5.4E-06 1.8E-10 78.1 2.7 24 67-90 2-25 (194)
160 3b85_A Phosphate starvation-in 97.8 9.5E-07 3.2E-11 87.5 -2.8 61 48-115 11-75 (208)
161 3tlx_A Adenylate kinase 2; str 97.8 7.7E-06 2.6E-10 82.1 3.6 37 64-101 27-63 (243)
162 3szr_A Interferon-induced GTP- 97.8 6.3E-06 2.1E-10 93.9 3.2 63 68-130 47-121 (608)
163 1tq4_A IIGP1, interferon-induc 97.8 2.7E-06 9.3E-11 92.8 0.2 51 51-101 37-105 (413)
164 1ltq_A Polynucleotide kinase; 97.8 2.2E-05 7.4E-10 80.2 6.9 36 66-101 2-37 (301)
165 2z0h_A DTMP kinase, thymidylat 97.8 3.4E-05 1.1E-09 73.2 7.6 23 68-90 2-24 (197)
166 1tf7_A KAIC; homohexamer, hexa 97.8 2.2E-06 7.5E-11 95.6 -0.7 63 49-114 24-96 (525)
167 2qag_B Septin-6, protein NEDD5 97.8 1.4E-06 4.7E-11 95.5 -2.6 39 48-90 26-66 (427)
168 3a4m_A L-seryl-tRNA(SEC) kinas 97.8 5.1E-05 1.8E-09 76.8 9.1 26 65-90 3-28 (260)
169 4a74_A DNA repair and recombin 97.8 7.6E-06 2.6E-10 79.4 2.5 57 59-118 21-86 (231)
170 3e70_C DPA, signal recognition 97.8 1.3E-05 4.4E-10 84.9 4.1 66 65-130 128-207 (328)
171 3uie_A Adenylyl-sulfate kinase 97.7 2.3E-06 7.9E-11 82.8 -1.9 51 48-101 10-62 (200)
172 1via_A Shikimate kinase; struc 97.7 6.5E-06 2.2E-10 77.5 1.2 34 67-101 5-38 (175)
173 1ly1_A Polynucleotide kinase; 97.7 1.7E-05 5.7E-10 74.0 3.7 35 66-101 2-37 (181)
174 1kht_A Adenylate kinase; phosp 97.7 3.2E-05 1.1E-09 72.7 5.0 34 67-100 4-41 (192)
175 1p9r_A General secretion pathw 97.6 1.4E-05 4.8E-10 87.3 1.9 44 52-100 158-202 (418)
176 2ze6_A Isopentenyl transferase 97.6 0.0002 6.8E-09 72.4 9.9 34 67-101 2-35 (253)
177 2oap_1 GSPE-2, type II secreti 97.6 1.2E-05 4.1E-10 89.9 0.8 48 51-101 248-296 (511)
178 2ocp_A DGK, deoxyguanosine kin 97.6 1E-05 3.5E-10 80.4 0.1 28 66-93 2-29 (241)
179 1u0l_A Probable GTPase ENGC; p 97.6 3.2E-05 1.1E-09 80.2 3.7 57 59-118 165-232 (301)
180 1aky_A Adenylate kinase; ATP:A 97.5 6.9E-05 2.4E-09 73.2 5.2 35 66-101 4-38 (220)
181 2bdt_A BH3686; alpha-beta prot 97.5 5.2E-05 1.8E-09 72.0 4.0 31 68-100 4-34 (189)
182 2bbw_A Adenylate kinase 4, AK4 97.5 1.2E-05 4E-10 80.3 -0.8 64 66-129 27-97 (246)
183 2yv5_A YJEQ protein; hydrolase 97.5 3.5E-05 1.2E-09 80.2 2.6 50 68-118 167-227 (302)
184 3be4_A Adenylate kinase; malar 97.5 0.00012 3.9E-09 71.8 5.8 35 66-101 5-39 (217)
185 2ehv_A Hypothetical protein PH 97.4 5.9E-05 2E-09 74.0 3.7 39 59-100 26-67 (251)
186 3umf_A Adenylate kinase; rossm 97.4 7.3E-05 2.5E-09 74.7 4.4 46 54-100 17-62 (217)
187 1e4v_A Adenylate kinase; trans 97.4 0.00015 5E-09 70.7 5.7 33 68-101 2-34 (214)
188 3pih_A Uvrabc system protein A 97.4 1.1E-05 3.7E-10 96.0 -3.0 30 51-83 598-627 (916)
189 1cr0_A DNA primase/helicase; R 97.4 3.2E-05 1.1E-09 79.1 0.8 41 51-94 23-64 (296)
190 2f1r_A Molybdopterin-guanine d 97.4 4.2E-05 1.4E-09 73.5 1.5 36 67-102 3-42 (171)
191 1t9h_A YLOQ, probable GTPase E 97.4 4E-05 1.4E-09 80.5 1.4 59 58-119 168-236 (307)
192 2i3b_A HCR-ntpase, human cance 97.3 3.6E-05 1.2E-09 75.1 0.6 34 68-102 3-36 (189)
193 1kag_A SKI, shikimate kinase I 97.3 0.00011 3.6E-09 68.5 3.7 33 67-100 5-37 (173)
194 2ewv_A Twitching motility prot 97.3 8.2E-05 2.8E-09 79.7 2.8 37 60-99 133-171 (372)
195 1lw7_A Transcriptional regulat 97.2 0.00012 4.1E-09 77.6 3.0 38 53-93 158-198 (365)
196 1ye8_A Protein THEP1, hypothet 97.2 0.00015 5.3E-09 69.7 3.0 23 68-90 2-24 (178)
197 2xb4_A Adenylate kinase; ATP-b 97.2 0.00017 5.9E-09 71.0 3.4 33 68-101 2-34 (223)
198 1zu4_A FTSY; GTPase, signal re 97.1 0.00046 1.6E-08 72.6 6.4 34 54-90 96-129 (320)
199 2rcn_A Probable GTPase ENGC; Y 97.1 0.00024 8.2E-09 76.2 3.8 69 53-125 206-280 (358)
200 3zvl_A Bifunctional polynucleo 97.1 0.0012 4.1E-08 71.6 9.4 35 65-100 257-291 (416)
201 1qhl_A Protein (cell division 97.1 3.2E-05 1.1E-09 77.8 -2.8 34 68-101 29-63 (227)
202 1pui_A ENGB, probable GTP-bind 97.1 7.8E-05 2.7E-09 71.2 -0.1 48 33-90 3-50 (210)
203 1ak2_A Adenylate kinase isoenz 97.1 0.00055 1.9E-08 67.6 6.1 36 65-101 15-50 (233)
204 2x8a_A Nuclear valosin-contain 97.1 0.0002 6.8E-09 73.4 2.9 45 51-101 34-78 (274)
205 4aby_A DNA repair protein RECN 97.1 0.00015 5.3E-09 77.4 2.1 37 50-90 48-84 (415)
206 3ld9_A DTMP kinase, thymidylat 97.1 0.00025 8.4E-09 71.2 3.3 27 64-90 19-45 (223)
207 3jvv_A Twitching mobility prot 97.0 0.00019 6.6E-09 76.6 2.4 29 59-90 119-147 (356)
208 2qag_C Septin-7; cell cycle, c 97.0 0.00017 6E-09 78.7 1.8 49 29-90 7-55 (418)
209 3ec2_A DNA replication protein 97.0 0.00036 1.2E-08 65.7 3.6 31 57-90 32-62 (180)
210 1qhx_A CPT, protein (chloramph 97.0 0.0004 1.4E-08 64.9 3.9 35 67-101 4-39 (178)
211 2o8b_B DNA mismatch repair pro 97.0 0.00045 1.5E-08 83.2 4.9 53 31-90 748-812 (1022)
212 2pez_A Bifunctional 3'-phospho 96.9 0.00045 1.5E-08 65.1 3.8 36 66-101 5-42 (179)
213 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00039 1.3E-08 67.0 3.3 37 51-90 10-47 (235)
214 2qnr_A Septin-2, protein NEDD5 96.9 0.00025 8.6E-09 73.6 2.1 43 48-100 9-53 (301)
215 3gmt_A Adenylate kinase; ssgci 96.9 0.00061 2.1E-08 68.8 4.7 34 67-101 9-42 (230)
216 2gks_A Bifunctional SAT/APS ki 96.9 0.001 3.4E-08 75.0 6.7 27 64-90 370-396 (546)
217 3thx_B DNA mismatch repair pro 96.9 0.00034 1.2E-08 83.3 2.9 38 49-89 659-696 (918)
218 1svm_A Large T antigen; AAA+ f 96.9 0.00029 9.9E-09 75.9 2.0 38 50-90 156-193 (377)
219 1ixz_A ATP-dependent metallopr 96.9 0.00032 1.1E-08 69.8 2.2 45 51-101 39-83 (254)
220 1n0w_A DNA repair protein RAD5 96.9 0.0008 2.7E-08 65.6 5.0 40 59-101 20-67 (243)
221 1wb9_A DNA mismatch repair pro 96.9 0.0005 1.7E-08 80.8 4.0 38 49-90 594-631 (800)
222 1pzn_A RAD51, DNA repair and r 96.8 0.00027 9.3E-09 75.0 1.5 63 53-118 120-192 (349)
223 1iy2_A ATP-dependent metallopr 96.8 0.00042 1.4E-08 70.2 2.2 45 51-101 63-107 (278)
224 3kta_A Chromosome segregation 96.8 0.00074 2.5E-08 63.5 3.7 33 54-90 18-50 (182)
225 2v54_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 63.9 4.1 34 66-99 4-37 (204)
226 1nij_A Hypothetical protein YJ 96.8 0.00036 1.2E-08 72.9 1.6 36 66-101 4-48 (318)
227 2vf7_A UVRA2, excinuclease ABC 96.7 0.00037 1.3E-08 82.3 1.4 35 52-89 512-547 (842)
228 3thx_A DNA mismatch repair pro 96.7 0.00075 2.6E-08 80.5 3.8 37 50-89 649-685 (934)
229 1ewq_A DNA mismatch repair pro 96.7 0.00079 2.7E-08 78.8 3.8 35 50-90 566-600 (765)
230 2kjq_A DNAA-related protein; s 96.6 0.00044 1.5E-08 64.5 1.2 26 62-90 35-60 (149)
231 1in4_A RUVB, holliday junction 96.6 0.00023 7.8E-09 74.6 -0.9 43 48-90 29-75 (334)
232 1oix_A RAS-related protein RAB 96.6 0.0014 4.9E-08 62.2 4.6 27 64-90 27-53 (191)
233 3ch4_B Pmkase, phosphomevalona 96.6 0.0013 4.4E-08 65.2 4.3 36 65-100 10-47 (202)
234 1zd8_A GTP:AMP phosphotransfer 96.6 0.00098 3.3E-08 65.4 3.3 35 66-101 7-41 (227)
235 1m7g_A Adenylylsulfate kinase; 96.6 0.00061 2.1E-08 66.2 1.7 34 67-100 26-62 (211)
236 2axn_A 6-phosphofructo-2-kinas 96.6 0.0025 8.6E-08 71.3 6.8 37 65-101 34-74 (520)
237 1gvn_B Zeta; postsegregational 96.6 0.0012 4.3E-08 67.9 4.1 39 63-101 30-69 (287)
238 2p5t_B PEZT; postsegregational 96.6 0.0014 4.8E-08 65.8 4.3 40 62-101 28-68 (253)
239 2wwf_A Thymidilate kinase, put 96.5 0.00097 3.3E-08 63.9 2.8 25 66-90 10-34 (212)
240 3foz_A TRNA delta(2)-isopenten 96.5 0.012 4.1E-07 62.0 11.1 36 65-101 9-44 (316)
241 3cr8_A Sulfate adenylyltranfer 96.5 0.001 3.5E-08 75.0 3.0 40 59-101 365-407 (552)
242 2vli_A Antibiotic resistance p 96.5 0.001 3.5E-08 62.2 2.5 26 66-91 5-30 (183)
243 2ygr_A Uvrabc system protein A 96.5 0.00082 2.8E-08 80.3 2.2 32 52-86 657-688 (993)
244 2cvh_A DNA repair and recombin 96.4 0.002 6.8E-08 61.8 4.0 44 53-100 9-53 (220)
245 2r6f_A Excinuclease ABC subuni 96.4 0.00076 2.6E-08 80.4 1.2 33 52-87 639-671 (972)
246 1udx_A The GTP-binding protein 96.3 0.0013 4.6E-08 71.6 2.7 35 53-90 147-181 (416)
247 3exa_A TRNA delta(2)-isopenten 96.3 0.0031 1.1E-07 66.6 5.4 35 66-101 3-37 (322)
248 1vma_A Cell division protein F 96.3 0.0013 4.4E-08 68.9 2.4 25 66-90 104-128 (306)
249 3crm_A TRNA delta(2)-isopenten 96.3 0.0034 1.2E-07 66.3 5.3 34 67-101 6-39 (323)
250 1gtv_A TMK, thymidylate kinase 96.2 0.0009 3.1E-08 64.2 0.7 23 68-90 2-24 (214)
251 2yvu_A Probable adenylyl-sulfa 96.2 0.0023 7.7E-08 60.6 3.5 25 66-90 13-37 (186)
252 1np6_A Molybdopterin-guanine d 96.2 0.0032 1.1E-07 60.5 4.6 35 66-100 6-44 (174)
253 1xjc_A MOBB protein homolog; s 96.2 0.0032 1.1E-07 60.6 4.5 35 66-100 4-42 (169)
254 1zak_A Adenylate kinase; ATP:A 96.1 0.0016 5.6E-08 63.4 1.9 35 66-101 5-39 (222)
255 3a8t_A Adenylate isopentenyltr 96.1 0.0042 1.4E-07 66.1 5.1 36 65-101 39-74 (339)
256 4hlc_A DTMP kinase, thymidylat 96.0 0.006 2E-07 59.9 5.2 24 67-90 3-26 (205)
257 1x6v_B Bifunctional 3'-phospho 96.0 0.0071 2.4E-07 69.3 6.4 37 65-101 51-89 (630)
258 1ls1_A Signal recognition part 96.0 0.0024 8.2E-08 66.2 2.3 32 54-90 91-122 (295)
259 3m6a_A ATP-dependent protease 95.9 0.0024 8.2E-08 71.6 2.3 48 50-101 96-144 (543)
260 1nlf_A Regulatory protein REPA 95.9 0.0039 1.3E-07 63.2 3.6 28 60-90 27-54 (279)
261 2p67_A LAO/AO transport system 95.9 0.0027 9.4E-08 66.8 2.4 40 48-90 41-80 (341)
262 2dr3_A UPF0273 protein PH0284; 95.8 0.0052 1.8E-07 59.8 4.0 31 57-90 17-47 (247)
263 1sxj_E Activator 1 40 kDa subu 95.8 0.0016 5.6E-08 67.4 0.3 40 61-101 32-73 (354)
264 3k1j_A LON protease, ATP-depen 95.8 0.0022 7.5E-08 72.7 1.3 50 47-99 44-95 (604)
265 2f9l_A RAB11B, member RAS onco 95.8 0.0053 1.8E-07 58.3 3.8 25 66-90 5-29 (199)
266 3eph_A TRNA isopentenyltransfe 95.7 0.0058 2E-07 66.5 4.3 35 66-101 2-36 (409)
267 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.004 1.4E-07 66.3 2.9 34 53-90 14-47 (365)
268 2px0_A Flagellar biosynthesis 95.7 0.0056 1.9E-07 63.5 3.8 24 67-90 106-129 (296)
269 1ni3_A YCHF GTPase, YCHF GTP-b 95.7 0.0079 2.7E-07 65.1 4.9 38 60-100 17-67 (392)
270 3hr8_A Protein RECA; alpha and 95.7 0.0081 2.8E-07 64.2 4.9 39 60-101 58-98 (356)
271 2o5v_A DNA replication and rep 95.6 0.0045 1.5E-07 66.2 2.6 35 52-90 16-50 (359)
272 2vf7_A UVRA2, excinuclease ABC 95.5 0.0068 2.3E-07 71.6 4.1 28 53-83 26-53 (842)
273 1sxj_C Activator 1 40 kDa subu 95.5 0.0021 7E-08 67.0 -0.4 42 48-90 29-70 (340)
274 1w1w_A Structural maintenance 95.4 0.0088 3E-07 64.7 4.2 28 60-90 23-50 (430)
275 1m2o_B GTP-binding protein SAR 95.4 0.0067 2.3E-07 57.4 2.8 35 51-89 12-46 (190)
276 1p5z_B DCK, deoxycytidine kina 95.4 0.007 2.4E-07 60.8 3.0 33 64-96 22-54 (263)
277 3ice_A Transcription terminati 95.4 0.0067 2.3E-07 65.9 3.0 75 10-90 108-198 (422)
278 2www_A Methylmalonic aciduria 95.3 0.012 4.1E-07 62.3 4.8 25 66-90 74-98 (349)
279 2wji_A Ferrous iron transport 95.3 0.0091 3.1E-07 54.9 3.3 23 67-89 4-26 (165)
280 3lda_A DNA repair protein RAD5 95.3 0.012 4E-07 63.9 4.5 40 59-101 174-221 (400)
281 2ygr_A Uvrabc system protein A 95.2 0.0087 3E-07 71.7 3.7 28 53-83 36-63 (993)
282 1tf7_A KAIC; homohexamer, hexa 95.2 0.0095 3.3E-07 66.3 3.8 31 57-90 275-305 (525)
283 2wjg_A FEOB, ferrous iron tran 95.1 0.012 4E-07 54.7 3.5 24 66-89 7-30 (188)
284 2dhr_A FTSH; AAA+ protein, hex 95.1 0.0085 2.9E-07 66.8 2.8 43 52-100 55-97 (499)
285 3cf0_A Transitional endoplasmi 95.0 0.017 5.6E-07 59.4 4.7 32 68-100 51-82 (301)
286 1f2t_A RAD50 ABC-ATPase; DNA d 95.0 0.015 5E-07 54.1 3.8 23 68-90 25-47 (149)
287 3sr0_A Adenylate kinase; phosp 95.0 0.011 3.8E-07 58.1 3.1 32 68-100 2-33 (206)
288 2gj8_A MNME, tRNA modification 94.9 0.013 4.4E-07 54.6 3.1 24 66-89 4-27 (172)
289 3pih_A Uvrabc system protein A 94.8 0.0091 3.1E-07 71.1 2.2 28 53-83 14-41 (916)
290 1lv7_A FTSH; alpha/beta domain 94.8 0.019 6.4E-07 57.0 4.1 32 68-100 47-78 (257)
291 2r6f_A Excinuclease ABC subuni 94.8 0.011 3.7E-07 70.6 2.7 28 53-83 34-61 (972)
292 3v9p_A DTMP kinase, thymidylat 94.7 0.011 3.9E-07 59.1 2.2 38 53-90 12-49 (227)
293 2ffh_A Protein (FFH); SRP54, s 94.6 0.022 7.7E-07 62.2 4.6 32 54-90 91-122 (425)
294 1e69_A Chromosome segregation 94.6 0.014 4.9E-07 60.6 2.8 32 55-90 17-48 (322)
295 3kl4_A SRP54, signal recogniti 94.6 0.023 7.7E-07 62.3 4.5 37 65-101 96-136 (433)
296 1f6b_A SAR1; gtpases, N-termin 94.5 0.0054 1.9E-07 58.5 -0.6 34 51-88 14-47 (198)
297 2zej_A Dardarin, leucine-rich 94.5 0.015 5.3E-07 54.4 2.5 23 67-89 3-25 (184)
298 1z2a_A RAS-related protein RAB 94.4 0.026 8.8E-07 50.8 3.8 25 65-89 4-28 (168)
299 1kao_A RAP2A; GTP-binding prot 94.4 0.028 9.5E-07 50.3 3.9 24 66-89 3-26 (167)
300 3bc1_A RAS-related protein RAB 94.3 0.028 9.7E-07 51.8 4.0 27 63-89 8-34 (195)
301 1j8m_F SRP54, signal recogniti 94.3 0.021 7.1E-07 59.3 3.4 31 56-90 92-122 (297)
302 1dek_A Deoxynucleoside monopho 94.3 0.026 8.8E-07 57.1 3.9 24 67-90 2-25 (241)
303 2ce2_X GTPase HRAS; signaling 94.3 0.025 8.7E-07 50.4 3.5 23 67-89 4-26 (166)
304 2ged_A SR-beta, signal recogni 94.3 0.027 9.2E-07 52.5 3.7 27 64-90 46-72 (193)
305 1u8z_A RAS-related protein RAL 94.2 0.03 1E-06 50.2 3.8 24 66-89 4-27 (168)
306 2dyk_A GTP-binding protein; GT 94.2 0.031 1E-06 50.1 3.9 23 67-89 2-24 (161)
307 3lxx_A GTPase IMAP family memb 94.2 0.025 8.6E-07 55.6 3.6 27 64-90 27-53 (239)
308 4edh_A DTMP kinase, thymidylat 94.2 0.024 8.1E-07 56.0 3.4 25 66-90 6-30 (213)
309 2fn4_A P23, RAS-related protei 94.2 0.031 1.1E-06 50.9 3.9 26 64-89 7-32 (181)
310 1ega_A Protein (GTP-binding pr 94.2 0.02 6.7E-07 59.2 2.8 23 67-89 9-31 (301)
311 1njg_A DNA polymerase III subu 94.2 0.014 4.7E-07 55.3 1.5 37 54-90 33-69 (250)
312 3pfi_A Holliday junction ATP-d 94.2 0.22 7.5E-06 51.1 10.7 27 64-90 53-79 (338)
313 2qmh_A HPR kinase/phosphorylas 94.1 0.035 1.2E-06 55.1 4.3 32 68-101 36-67 (205)
314 1ky3_A GTP-binding protein YPT 94.1 0.033 1.1E-06 50.8 3.9 26 64-89 6-31 (182)
315 4dsu_A GTPase KRAS, isoform 2B 94.1 0.031 1.1E-06 51.4 3.8 25 65-89 3-27 (189)
316 1jbk_A CLPB protein; beta barr 94.1 0.032 1.1E-06 51.0 3.7 24 67-90 44-67 (195)
317 1c1y_A RAS-related protein RAP 94.0 0.035 1.2E-06 49.9 3.8 24 66-89 3-26 (167)
318 3t34_A Dynamin-related protein 94.0 0.022 7.4E-07 60.0 2.8 34 50-89 24-57 (360)
319 2wsm_A Hydrogenase expression/ 94.0 0.031 1.1E-06 53.6 3.6 26 65-90 29-54 (221)
320 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.034 1.2E-06 50.8 3.6 25 65-89 6-30 (177)
321 1upt_A ARL1, ADP-ribosylation 94.0 0.042 1.4E-06 49.7 4.3 25 65-89 6-30 (171)
322 3clv_A RAB5 protein, putative; 93.9 0.042 1.4E-06 50.7 4.3 25 65-89 6-30 (208)
323 3lv8_A DTMP kinase, thymidylat 93.9 0.024 8.1E-07 57.1 2.8 25 66-90 27-51 (236)
324 1z08_A RAS-related protein RAB 93.9 0.037 1.3E-06 50.0 3.8 25 65-89 5-29 (170)
325 3qks_A DNA double-strand break 93.9 0.035 1.2E-06 54.0 3.8 23 68-90 25-47 (203)
326 2erx_A GTP-binding protein DI- 93.9 0.035 1.2E-06 50.1 3.6 24 66-89 3-26 (172)
327 2lkc_A Translation initiation 93.9 0.032 1.1E-06 50.9 3.4 25 65-89 7-31 (178)
328 3p32_A Probable GTPase RV1496/ 93.9 0.048 1.6E-06 57.6 5.1 38 62-99 75-116 (355)
329 1ek0_A Protein (GTP-binding pr 93.9 0.036 1.2E-06 49.9 3.6 23 67-89 4-26 (170)
330 2oil_A CATX-8, RAS-related pro 93.9 0.04 1.4E-06 51.4 4.0 26 64-89 23-48 (193)
331 1ypw_A Transitional endoplasmi 93.9 0.034 1.2E-06 65.3 4.3 38 59-100 234-271 (806)
332 3dm5_A SRP54, signal recogniti 93.8 0.045 1.5E-06 60.2 4.9 37 65-101 99-139 (443)
333 1z0j_A RAB-22, RAS-related pro 93.8 0.038 1.3E-06 49.8 3.7 24 66-89 6-29 (170)
334 3k53_A Ferrous iron transport 93.8 0.03 1E-06 56.4 3.2 24 66-89 3-26 (271)
335 1m8p_A Sulfate adenylyltransfe 93.8 0.032 1.1E-06 63.2 3.7 30 62-91 392-421 (573)
336 1g16_A RAS-related protein SEC 93.8 0.036 1.2E-06 49.9 3.5 24 66-89 3-26 (170)
337 3bos_A Putative DNA replicatio 93.8 0.035 1.2E-06 53.2 3.5 25 66-90 52-76 (242)
338 2nzj_A GTP-binding protein REM 93.8 0.036 1.2E-06 50.4 3.4 24 66-89 4-27 (175)
339 3qkt_A DNA double-strand break 93.7 0.036 1.2E-06 58.0 3.8 23 68-90 25-47 (339)
340 3con_A GTPase NRAS; structural 93.7 0.04 1.4E-06 51.2 3.7 25 65-89 20-44 (190)
341 1mky_A Probable GTP-binding pr 93.7 0.052 1.8E-06 58.9 5.0 26 65-90 179-204 (439)
342 2w58_A DNAI, primosome compone 93.7 0.038 1.3E-06 52.5 3.5 24 67-90 55-78 (202)
343 1r2q_A RAS-related protein RAB 93.6 0.043 1.5E-06 49.4 3.6 24 66-89 6-29 (170)
344 1kjw_A Postsynaptic density pr 93.6 0.16 5.6E-06 52.6 8.5 157 67-240 106-266 (295)
345 1z0f_A RAB14, member RAS oncog 93.6 0.048 1.7E-06 49.6 4.0 26 64-89 13-38 (179)
346 1svi_A GTP-binding protein YSX 93.5 0.037 1.3E-06 51.6 3.1 26 64-89 21-46 (195)
347 3b9p_A CG5977-PA, isoform A; A 93.5 0.041 1.4E-06 55.5 3.7 24 67-90 55-78 (297)
348 2hxs_A RAB-26, RAS-related pro 93.5 0.053 1.8E-06 49.5 4.1 25 65-89 5-29 (178)
349 2zr9_A Protein RECA, recombina 93.5 0.044 1.5E-06 58.1 3.9 28 60-90 58-85 (349)
350 2g6b_A RAS-related protein RAB 93.5 0.052 1.8E-06 49.6 4.0 26 64-89 8-33 (180)
351 3q85_A GTP-binding protein REM 93.4 0.043 1.5E-06 49.6 3.3 24 66-89 2-25 (169)
352 2a9k_A RAS-related protein RAL 93.4 0.051 1.8E-06 49.7 3.8 24 66-89 18-41 (187)
353 2gf0_A GTP-binding protein DI- 93.4 0.051 1.8E-06 50.6 3.8 26 64-89 6-31 (199)
354 3tw8_B RAS-related protein RAB 93.3 0.049 1.7E-06 49.6 3.6 26 64-89 7-32 (181)
355 3pqc_A Probable GTP-binding pr 93.3 0.041 1.4E-06 50.9 3.0 25 65-89 22-46 (195)
356 1nrj_B SR-beta, signal recogni 93.3 0.052 1.8E-06 51.8 3.8 27 64-90 10-36 (218)
357 4tmk_A Protein (thymidylate ki 93.3 0.037 1.3E-06 54.7 2.8 24 67-90 4-27 (213)
358 2p65_A Hypothetical protein PF 93.3 0.041 1.4E-06 50.4 2.9 23 68-90 45-67 (187)
359 4fcw_A Chaperone protein CLPB; 93.2 0.06 2E-06 54.4 4.4 24 67-90 48-71 (311)
360 2hf9_A Probable hydrogenase ni 93.2 0.049 1.7E-06 52.4 3.6 26 65-90 37-62 (226)
361 2y8e_A RAB-protein 6, GH09086P 93.2 0.047 1.6E-06 49.6 3.2 24 66-89 14-37 (179)
362 2z43_A DNA repair and recombin 93.2 0.07 2.4E-06 55.5 4.9 28 60-90 104-131 (324)
363 2gf9_A RAS-related protein RAB 93.2 0.06 2.1E-06 50.2 4.0 26 64-89 20-45 (189)
364 3tkl_A RAS-related protein RAB 93.1 0.062 2.1E-06 49.9 4.0 26 64-89 14-39 (196)
365 2efe_B Small GTP-binding prote 93.1 0.06 2E-06 49.3 3.8 25 65-89 11-35 (181)
366 2bov_A RAla, RAS-related prote 93.1 0.06 2.1E-06 50.4 3.8 25 65-89 13-37 (206)
367 3kkq_A RAS-related protein M-R 93.1 0.069 2.3E-06 49.2 4.2 26 64-89 16-41 (183)
368 2bme_A RAB4A, RAS-related prot 93.1 0.058 2E-06 49.7 3.6 26 64-89 8-33 (186)
369 1vg8_A RAS-related protein RAB 93.0 0.062 2.1E-06 50.5 3.9 26 64-89 6-31 (207)
370 2xtp_A GTPase IMAP family memb 93.0 0.05 1.7E-06 54.0 3.3 27 63-89 19-45 (260)
371 1z06_A RAS-related protein RAB 92.9 0.067 2.3E-06 49.8 3.9 25 65-89 19-43 (189)
372 3tmk_A Thymidylate kinase; pho 92.9 0.044 1.5E-06 54.4 2.7 25 67-91 6-30 (216)
373 3q72_A GTP-binding protein RAD 92.9 0.051 1.8E-06 49.0 3.0 23 67-89 3-25 (166)
374 3t1o_A Gliding protein MGLA; G 92.9 0.066 2.2E-06 49.5 3.8 27 64-90 12-38 (198)
375 3h4m_A Proteasome-activating n 92.9 0.063 2.2E-06 53.7 3.9 23 68-90 53-75 (285)
376 2fg5_A RAB-22B, RAS-related pr 92.9 0.059 2E-06 50.6 3.4 26 64-89 21-46 (192)
377 2a5j_A RAS-related protein RAB 92.8 0.072 2.5E-06 49.8 4.0 26 64-89 19-44 (191)
378 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.067 2.3E-06 49.0 3.6 24 66-89 5-28 (186)
379 2qz4_A Paraplegin; AAA+, SPG7, 92.8 0.065 2.2E-06 52.6 3.7 23 68-90 41-63 (262)
380 1moz_A ARL1, ADP-ribosylation 92.8 0.047 1.6E-06 50.2 2.5 25 64-88 16-40 (183)
381 1g8f_A Sulfate adenylyltransfe 92.7 0.05 1.7E-06 60.8 3.1 28 64-91 393-420 (511)
382 3ihw_A Centg3; RAS, centaurin, 92.7 0.076 2.6E-06 49.8 3.9 25 65-89 19-43 (184)
383 3t15_A Ribulose bisphosphate c 92.7 0.063 2.1E-06 55.0 3.6 27 64-90 34-60 (293)
384 1r8s_A ADP-ribosylation factor 92.6 0.07 2.4E-06 48.0 3.5 22 68-89 2-23 (164)
385 2qby_A CDC6 homolog 1, cell di 92.6 0.054 1.9E-06 55.7 3.0 27 64-90 43-69 (386)
386 2p5s_A RAS and EF-hand domain 92.6 0.077 2.6E-06 50.1 3.9 27 63-89 25-51 (199)
387 3t5g_A GTP-binding protein RHE 92.6 0.065 2.2E-06 49.3 3.2 24 66-89 6-29 (181)
388 2cxx_A Probable GTP-binding pr 92.5 0.051 1.7E-06 50.2 2.4 23 67-89 2-24 (190)
389 1fnn_A CDC6P, cell division co 92.5 0.072 2.5E-06 55.2 3.9 23 68-90 46-68 (389)
390 3reg_A RHO-like small GTPase; 92.5 0.077 2.6E-06 49.6 3.7 27 63-89 20-46 (194)
391 1ksh_A ARF-like protein 2; sma 92.5 0.064 2.2E-06 49.6 3.1 26 64-89 16-41 (186)
392 2atv_A RERG, RAS-like estrogen 92.5 0.085 2.9E-06 49.5 4.0 26 64-89 26-51 (196)
393 3bwd_D RAC-like GTP-binding pr 92.5 0.078 2.7E-06 48.5 3.7 24 66-89 8-31 (182)
394 1fzq_A ADP-ribosylation factor 92.5 0.074 2.5E-06 49.6 3.5 26 64-89 14-39 (181)
395 3n70_A Transport activator; si 92.5 0.072 2.5E-06 48.5 3.3 23 68-90 26-48 (145)
396 3tqf_A HPR(Ser) kinase; transf 92.4 0.076 2.6E-06 51.7 3.6 34 52-89 6-39 (181)
397 1m7b_A RND3/RHOE small GTP-bin 92.4 0.074 2.5E-06 49.4 3.5 25 65-89 6-30 (184)
398 1c9k_A COBU, adenosylcobinamid 92.4 0.053 1.8E-06 52.6 2.5 22 68-89 1-22 (180)
399 1x3s_A RAS-related protein RAB 92.4 0.079 2.7E-06 49.1 3.6 24 66-89 15-38 (195)
400 1sxj_D Activator 1 41 kDa subu 92.4 0.034 1.2E-06 57.1 1.2 38 52-90 45-82 (353)
401 1yrb_A ATP(GTP)binding protein 92.3 0.12 4.1E-06 50.9 5.1 40 61-100 9-51 (262)
402 3syl_A Protein CBBX; photosynt 92.3 0.066 2.3E-06 54.1 3.2 25 66-90 67-91 (309)
403 3lxw_A GTPase IMAP family memb 92.3 0.075 2.6E-06 53.0 3.5 27 64-90 19-45 (247)
404 3oes_A GTPase rhebl1; small GT 92.3 0.078 2.7E-06 50.1 3.5 25 65-89 23-47 (201)
405 4ag6_A VIRB4 ATPase, type IV s 92.2 0.073 2.5E-06 56.5 3.5 23 68-90 37-59 (392)
406 2chg_A Replication factor C sm 92.2 0.077 2.6E-06 49.6 3.3 23 68-90 40-62 (226)
407 3c5c_A RAS-like protein 12; GD 92.2 0.094 3.2E-06 49.1 3.9 26 64-89 19-44 (187)
408 2ohf_A Protein OLA1, GTP-bindi 92.2 0.082 2.8E-06 57.3 3.9 23 67-89 23-45 (396)
409 1xwi_A SKD1 protein; VPS4B, AA 92.2 0.11 3.7E-06 54.1 4.7 33 67-99 46-78 (322)
410 2v3c_C SRP54, signal recogniti 92.2 0.059 2E-06 58.9 2.8 37 65-101 98-138 (432)
411 2h17_A ADP-ribosylation factor 92.1 0.066 2.3E-06 49.6 2.7 25 65-89 20-44 (181)
412 1zj6_A ADP-ribosylation factor 92.1 0.08 2.7E-06 49.2 3.3 26 64-89 14-39 (187)
413 3b1v_A Ferrous iron uptake tra 92.1 0.077 2.6E-06 54.2 3.4 24 66-89 3-26 (272)
414 1zd9_A ADP-ribosylation factor 92.1 0.09 3.1E-06 49.1 3.6 24 66-89 22-45 (188)
415 3cph_A RAS-related protein SEC 92.1 0.096 3.3E-06 49.4 3.8 25 65-89 19-43 (213)
416 1zbd_A Rabphilin-3A; G protein 92.1 0.093 3.2E-06 49.3 3.7 24 66-89 8-31 (203)
417 2bcg_Y Protein YP2, GTP-bindin 92.1 0.091 3.1E-06 49.6 3.6 26 64-89 6-31 (206)
418 2fh5_B SR-beta, signal recogni 92.0 0.088 3E-06 50.0 3.5 25 65-89 6-30 (214)
419 1v5w_A DMC1, meiotic recombina 92.0 0.085 2.9E-06 55.5 3.7 27 60-89 119-145 (343)
420 2iwr_A Centaurin gamma 1; ANK 92.0 0.08 2.7E-06 48.5 3.1 24 66-89 7-30 (178)
421 3hjn_A DTMP kinase, thymidylat 92.0 0.074 2.5E-06 51.6 3.0 23 68-90 2-24 (197)
422 2ew1_A RAS-related protein RAB 92.0 0.091 3.1E-06 50.3 3.6 26 64-89 24-49 (201)
423 1ko7_A HPR kinase/phosphatase; 92.0 0.11 3.7E-06 54.7 4.4 36 50-89 132-167 (314)
424 4bas_A ADP-ribosylation factor 91.9 0.096 3.3E-06 48.7 3.6 27 63-89 14-40 (199)
425 1d2n_A N-ethylmaleimide-sensit 91.9 0.11 3.7E-06 52.0 4.2 27 64-90 62-88 (272)
426 1l8q_A Chromosomal replication 91.9 0.081 2.8E-06 54.3 3.3 25 66-90 37-61 (324)
427 2r6a_A DNAB helicase, replicat 91.9 0.065 2.2E-06 58.4 2.6 37 51-90 191-227 (454)
428 3auy_A DNA double-strand break 91.9 0.09 3.1E-06 55.7 3.7 32 54-89 17-48 (371)
429 4ad8_A DNA repair protein RECN 91.8 0.031 1E-06 62.0 0.0 36 52-91 50-85 (517)
430 2fv8_A H6, RHO-related GTP-bin 91.8 0.078 2.7E-06 50.4 2.9 36 51-89 13-48 (207)
431 3llm_A ATP-dependent RNA helic 91.8 0.083 2.9E-06 51.9 3.2 26 59-87 72-97 (235)
432 2qu8_A Putative nucleolar GTP- 91.8 0.083 2.8E-06 51.2 3.1 26 64-89 27-52 (228)
433 3dz8_A RAS-related protein RAB 91.8 0.094 3.2E-06 49.0 3.3 26 65-90 22-47 (191)
434 2zts_A Putative uncharacterize 91.8 0.11 3.7E-06 50.4 3.9 26 60-88 27-52 (251)
435 3cbq_A GTP-binding protein REM 91.8 0.083 2.9E-06 50.1 3.0 26 63-88 20-45 (195)
436 2o52_A RAS-related protein RAB 91.8 0.082 2.8E-06 50.1 2.9 26 64-89 23-48 (200)
437 2j37_W Signal recognition part 91.7 0.13 4.5E-06 57.4 4.9 38 64-101 99-140 (504)
438 2il1_A RAB12; G-protein, GDP, 91.7 0.11 3.6E-06 48.9 3.6 26 64-89 24-49 (192)
439 4dhe_A Probable GTP-binding pr 91.7 0.049 1.7E-06 52.1 1.3 26 64-89 27-52 (223)
440 2f7s_A C25KG, RAS-related prot 91.7 0.1 3.5E-06 49.7 3.5 26 64-89 23-48 (217)
441 3iby_A Ferrous iron transport 91.6 0.079 2.7E-06 53.4 2.8 23 67-89 2-24 (256)
442 3hws_A ATP-dependent CLP prote 91.6 0.097 3.3E-06 54.8 3.5 23 68-90 53-75 (363)
443 3i8s_A Ferrous iron transport 91.6 0.094 3.2E-06 53.2 3.3 24 66-89 3-26 (274)
444 2qtf_A Protein HFLX, GTP-bindi 91.6 0.079 2.7E-06 56.5 2.8 24 67-90 180-203 (364)
445 2cjw_A GTP-binding protein GEM 91.5 0.13 4.3E-06 48.7 4.0 24 66-89 6-29 (192)
446 1ofh_A ATP-dependent HSL prote 91.5 0.12 4.2E-06 51.7 4.1 24 67-90 51-74 (310)
447 2fu5_C RAS-related protein RAB 91.5 0.076 2.6E-06 48.9 2.3 25 65-89 7-31 (183)
448 1gwn_A RHO-related GTP-binding 91.4 0.11 3.9E-06 49.8 3.5 26 64-89 26-51 (205)
449 2q3h_A RAS homolog gene family 91.4 0.11 3.7E-06 48.8 3.3 25 65-89 19-43 (201)
450 2j1l_A RHO-related GTP-binding 91.3 0.1 3.6E-06 50.0 3.1 25 65-89 33-57 (214)
451 2r62_A Cell division protease 91.3 0.056 1.9E-06 53.7 1.2 22 69-90 47-68 (268)
452 3a1s_A Iron(II) transport prot 91.2 0.11 3.7E-06 52.4 3.3 24 66-89 5-28 (258)
453 2e87_A Hypothetical protein PH 91.2 0.079 2.7E-06 55.8 2.4 26 65-90 166-191 (357)
454 1h65_A Chloroplast outer envel 91.2 0.11 3.7E-06 52.2 3.3 29 61-89 34-62 (270)
455 2hup_A RAS-related protein RAB 91.2 0.12 4.2E-06 49.0 3.5 26 64-89 27-52 (201)
456 2v1u_A Cell division control p 91.2 0.097 3.3E-06 54.0 2.9 26 65-90 43-68 (387)
457 2b6h_A ADP-ribosylation factor 91.1 0.13 4.3E-06 48.5 3.5 25 64-88 27-51 (192)
458 1jwy_B Dynamin A GTPase domain 91.1 0.1 3.4E-06 53.1 3.0 24 66-89 24-47 (315)
459 1p6x_A Thymidine kinase; P-loo 91.1 0.1 3.5E-06 55.3 3.1 26 66-91 7-32 (334)
460 3def_A T7I23.11 protein; chlor 91.1 0.12 4.1E-06 51.7 3.5 26 64-89 34-59 (262)
461 2h57_A ADP-ribosylation factor 91.1 0.099 3.4E-06 48.7 2.7 25 65-89 20-44 (190)
462 3iev_A GTP-binding protein ERA 91.1 0.12 4.1E-06 53.4 3.5 24 66-89 10-33 (308)
463 2atx_A Small GTP binding prote 91.0 0.12 4.2E-06 48.1 3.3 25 65-89 17-41 (194)
464 3llu_A RAS-related GTP-binding 91.0 0.1 3.5E-06 49.2 2.7 29 62-90 16-44 (196)
465 1bif_A 6-phosphofructo-2-kinas 91.0 0.13 4.5E-06 56.2 4.0 26 65-90 38-63 (469)
466 2dby_A GTP-binding protein; GD 90.9 0.096 3.3E-06 56.1 2.7 23 67-89 2-24 (368)
467 4gzl_A RAS-related C3 botulinu 90.9 0.13 4.6E-06 48.9 3.5 26 64-89 28-53 (204)
468 2xkx_A Disks large homolog 4; 90.9 0.9 3.1E-05 52.6 11.0 157 67-240 532-692 (721)
469 2gco_A H9, RHO-related GTP-bin 90.8 0.13 4.6E-06 48.6 3.4 24 66-89 25-48 (201)
470 3t5d_A Septin-7; GTP-binding p 90.8 0.12 4.1E-06 52.1 3.2 24 66-89 8-31 (274)
471 1of1_A Thymidine kinase; trans 90.7 0.13 4.5E-06 55.3 3.6 32 65-96 48-79 (376)
472 2qby_B CDC6 homolog 3, cell di 90.7 0.14 4.7E-06 53.1 3.6 27 64-90 43-69 (384)
473 1e2k_A Thymidine kinase; trans 90.6 0.12 4E-06 54.8 2.9 26 66-91 4-29 (331)
474 3bh0_A DNAB-like replicative h 90.4 0.16 5.6E-06 52.6 3.9 36 52-90 57-92 (315)
475 1wf3_A GTP-binding protein; GT 90.3 0.14 4.8E-06 52.9 3.3 23 67-89 8-30 (301)
476 1u94_A RECA protein, recombina 90.3 0.18 6.2E-06 53.6 4.2 28 60-90 60-87 (356)
477 3d8b_A Fidgetin-like protein 1 90.3 0.17 5.8E-06 53.2 3.9 26 65-90 116-141 (357)
478 2x77_A ADP-ribosylation factor 90.2 0.11 3.9E-06 48.1 2.3 25 64-88 20-44 (189)
479 2zan_A Vacuolar protein sortin 90.2 0.24 8.2E-06 53.9 5.2 34 66-99 167-200 (444)
480 2i1q_A DNA repair and recombin 90.2 0.14 4.7E-06 52.8 3.1 27 60-89 95-121 (322)
481 2aka_B Dynamin-1; fusion prote 90.2 0.15 5E-06 51.3 3.2 24 66-89 26-49 (299)
482 1um8_A ATP-dependent CLP prote 90.1 0.16 5.4E-06 53.4 3.5 23 68-90 74-96 (376)
483 3cpj_B GTP-binding protein YPT 90.1 0.2 6.7E-06 48.3 3.9 25 65-89 12-36 (223)
484 2dy1_A Elongation factor G; tr 90.0 0.13 4.4E-06 59.1 3.0 24 67-90 10-33 (665)
485 2j0v_A RAC-like GTP-binding pr 90.0 0.18 6E-06 47.8 3.5 24 66-89 9-32 (212)
486 2qag_A Septin-2, protein NEDD5 90.0 0.1 3.5E-06 55.4 1.9 23 67-89 38-60 (361)
487 2z4s_A Chromosomal replication 90.0 0.15 5.1E-06 55.5 3.3 25 66-90 130-154 (440)
488 2yc2_C IFT27, small RAB-relate 90.0 0.075 2.6E-06 49.7 0.8 24 66-89 20-43 (208)
489 1jal_A YCHF protein; nucleotid 90.0 0.25 8.4E-06 52.9 4.9 23 67-89 3-25 (363)
490 2ce7_A Cell division protein F 89.9 0.16 5.4E-06 56.3 3.4 22 69-90 52-73 (476)
491 2bjv_A PSP operon transcriptio 89.8 0.18 6.2E-06 50.0 3.5 23 68-90 31-53 (265)
492 3eie_A Vacuolar protein sortin 89.8 0.18 6.2E-06 52.0 3.6 25 66-90 51-75 (322)
493 4djt_A GTP-binding nuclear pro 89.6 0.081 2.8E-06 50.4 0.7 26 64-89 9-34 (218)
494 1jr3_A DNA polymerase III subu 89.6 0.072 2.5E-06 55.1 0.3 35 56-90 28-62 (373)
495 3q3j_B RHO-related GTP-binding 89.5 0.23 7.9E-06 47.7 3.8 25 65-89 26-50 (214)
496 1g41_A Heat shock protein HSLU 89.5 0.22 7.5E-06 54.7 4.1 31 68-99 52-82 (444)
497 1sxj_A Activator 1 95 kDa subu 89.4 0.3 1E-05 54.0 5.2 33 66-99 77-109 (516)
498 3u61_B DNA polymerase accessor 89.4 0.24 8.1E-06 50.6 4.1 37 54-90 36-72 (324)
499 3uk6_A RUVB-like 2; hexameric 89.3 0.16 5.4E-06 52.7 2.6 24 67-90 71-94 (368)
500 2ius_A DNA translocase FTSK; n 89.1 0.19 6.4E-06 56.2 3.3 30 56-88 160-189 (512)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=1.7e-23 Score=221.31 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=157.8
Q ss_pred CceEEEeeccceeccC---CcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEecCCccccccc-----cccccC
Q 006094 48 GFFIVIRACQLLAQKN---HGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI-----IDGNFD 113 (661)
Q Consensus 48 g~~~vL~~Isl~i~~g---e~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I~lD~~~~~~~~-----i~~~fq 113 (661)
+...++++++..+.+. ..+++|||+||||||||||+++|.+++. .++.+.+|+++..... ....++
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g 150 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKG 150 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhcc
Confidence 4445566666665443 4678999999999999999999999862 4677999998643211 123466
Q ss_pred CCCCCchhhHHHHHHhhhccc-cccccccccccccccccceeeccCccEEEEEehhhhhcc-----------ccCCCCEE
Q 006094 114 DPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-----------LRPLIDLR 181 (661)
Q Consensus 114 ~p~~~d~~tl~enL~~L~~g~-~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de-----------Lr~llDlk 181 (661)
.|..||...+.+.+..++.|+ .+..|.||+..+.+.......+.+.++||+||++++++. +.+++|.+
T Consensus 151 ~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~ 230 (321)
T 3tqc_A 151 FPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFS 230 (321)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEE
T ss_pred CcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeE
Confidence 789999999999999999998 899999999999887545566788899999999999865 88999999
Q ss_pred EEEEcCchhHHHHHHHHHHHhhC---------------CCHHH----HHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 182 VSVTGGVHFDLVKRVFRDIQRVG---------------QEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 182 IfVdad~diRLiRRI~RDi~eRG---------------~s~Ee----Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
|||++|.++++.|++.||...+| .+.++ +..+|.....|++++||+|++.+||+||+.+
T Consensus 231 I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 231 LFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred EEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 99999999999999999988765 34443 3456767778999999999999999999743
No 2
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.88 E-value=2.5e-23 Score=217.61 Aligned_cols=202 Identities=16% Similarity=0.221 Sum_probs=153.7
Q ss_pred CceeeeecccceeeeccCceEEEeecccee-------------------ccCCcceEEEEECCCCCcHHHHHHHHHHhC-
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLA-------------------QKNHGIILVGVAGPSGAGKTVFTEKVLNFM- 90 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i-------------------~~ge~~~IIGI~GpSGSGKSTLak~La~ll- 90 (661)
..++++.++.+.| ..+++++++.+ .+|+ +|||+||||||||||+++|++++
T Consensus 35 ~~~i~~~~v~~~y------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~---iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 35 NEDLSLEEVAEIY------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY---IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CTTCCHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE---EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccccchHhHHHHH------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE---EEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567788887777 24688999887 4444 99999999999999999999975
Q ss_pred --CCceEEe---cCCccccc---cccccccCCCCC---CchhhHHHHHHhhhcccc-ccccccccccccccccceeeccC
Q 006094 91 --PSIAVIT---MDNYNDSS---RIIDGNFDDPRL---TDYDTLLENIRGLKEGKA-VQVPIYDFKSSSRIGYRTLEVPS 158 (661)
Q Consensus 91 --p~~g~I~---lD~~~~~~---~~i~~~fq~p~~---~d~~tl~enL~~L~~g~~-I~~P~yd~~~~~r~~~~~~~v~~ 158 (661)
|..|.+. +|+++... ..++++ +.... ++...+...+..+..+.. +.+|.|++..+.+.......+.+
T Consensus 106 ~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~ 184 (308)
T 1sq5_A 106 RWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQ 184 (308)
T ss_dssp TSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-
T ss_pred hCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCC
Confidence 3445444 49986422 223444 44443 444444455566667776 99999999998876533344556
Q ss_pred ccEEEEEehhhhhc-----------cccCCCCEEEEEEcCchhHHHHHHHHHHHh---------------hCCCHHHH--
Q 006094 159 SRIVIIEGIYALSE-----------KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEEI-- 210 (661)
Q Consensus 159 a~VVIVEGilaL~d-----------eLr~llDlkIfVdad~diRLiRRI~RDi~e---------------RG~s~EeV-- 210 (661)
.++||+||++++++ .+.+++|.+|||++|.++++.|++.|+... +|.+.+++
T Consensus 185 ~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~ 264 (308)
T 1sq5_A 185 PDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIK 264 (308)
T ss_dssp CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHH
T ss_pred CCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHH
Confidence 78999999999986 688999999999999999999999998642 38888764
Q ss_pred --HHHHHhhcccchhhccCCCCCCceEEEECCCC
Q 006094 211 --IHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (661)
Q Consensus 211 --i~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~ 242 (661)
.+||...++|++.+||+|.+..||+||+|+++
T Consensus 265 ~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 265 TAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 45666678899999999999999999998764
No 3
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=2.7e-21 Score=188.70 Aligned_cols=175 Identities=31% Similarity=0.524 Sum_probs=146.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccc------cccccccCCCCCCchhhHHHHHHhhhcccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~------~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P 139 (661)
.+|||+||||||||||++.|++++ |..+.+..|.+.... ....+.|+.+..++...+.+.+..+..++.+..|
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 86 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMP 86 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCC
Confidence 499999999999999999999987 347888888864311 1123445666777878888888888778888889
Q ss_pred ccccccccccccceeeccCccEEEEEehhhhhcc-ccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhc
Q 006094 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (661)
Q Consensus 140 ~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de-Lr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v 218 (661)
.+++..+.+.. +...+..++++++||.+++.++ ...++|.+||||++.+.++.|++.|+..++|.+...+.++|..++
T Consensus 87 ~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~ 165 (211)
T 3asz_A 87 VYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQV 165 (211)
T ss_dssp CEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTH
T ss_pred cccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99888877643 2345667899999999999864 667899999999999999999999998888999999999999999
Q ss_pred ccchhhccCCCCCCceEEEECCCC
Q 006094 219 YPMYKAFIEPDLQTAHIKIINKFN 242 (661)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~N~~~ 242 (661)
.|.|.+|++|.+..||+||+|+++
T Consensus 166 ~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 166 KPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHHHHHTTGGGGGGCSEEEESTTS
T ss_pred hhhHHHhcccchhcCeEEEeCCCc
Confidence 999999999999999999998874
No 4
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=6.1e-21 Score=192.10 Aligned_cols=191 Identities=28% Similarity=0.486 Sum_probs=135.9
Q ss_pred eccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---------CceEEecCCcccccc--------c
Q 006094 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDSSR--------I 107 (661)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp---------~~g~I~lD~~~~~~~--------~ 107 (661)
...|...+|+++||.+++|. +|||+||||||||||+++|++.++ ..+.+..|.++..-. .
T Consensus 7 ~~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~ 83 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 83 (245)
T ss_dssp ----------------CCSE---EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHT
T ss_pred ccCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhc
Confidence 34456779999999999998 999999999999999999999763 234677776532110 0
Q ss_pred cccccCCCCCCchhhHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEc
Q 006094 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTG 186 (661)
Q Consensus 108 i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVda 186 (661)
..+.|.++..++...+.+.+..+........+.|+...+.+... ...+.+.+++|+||++++. ..+.+++|.+|||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~t 162 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDT 162 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEEC
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEEC
Confidence 12345556667777777777777666666667787777766643 2334567899999999885 678888999999999
Q ss_pred CchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 187 GVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 187 d~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
+.+.++.|++.|++ ++|++.+++.++|..+++|.++++++|.++.||+||++.
T Consensus 163 h~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 163 DSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp CHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred CHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 99999999999988 779999999999999999999999999999999999754
No 5
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.84 E-value=4.6e-21 Score=188.24 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=138.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-C---CceEEecCCcccccc---ccc-c-ccCCCCCCchhhHHHHHHhhhcccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---IID-G-NFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll-p---~~g~I~lD~~~~~~~---~i~-~-~fq~p~~~d~~tl~enL~~L~~g~~I~ 137 (661)
.+|||+||||||||||+++|++.+ | ..|.|.+|+++.... ..+ + ....+..|+...+.+.+..+..++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i~ 102 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCcee
Confidence 499999999999999999999998 3 489999999864321 111 1 123456677777888888888888899
Q ss_pred ccccccccccccccceeeccCc-cEEEEEehhhhhc-----cccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHH
Q 006094 138 VPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (661)
Q Consensus 138 ~P~yd~~~~~r~~~~~~~v~~a-~VVIVEGilaL~d-----eLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi 211 (661)
.|.|++..+...+ +...+..+ +++|+||.+++.+ ++.+.+|.+|||+++.++++.|.+.|+ .++|++.+++.
T Consensus 103 ~p~~d~~~~~~~g-~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t~~~~~ 180 (208)
T 3c8u_A 103 YPLFDRARDIAIA-GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAV 180 (208)
T ss_dssp EEEEETTTTEEEE-EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCCHHHHH
T ss_pred cccCCccccCCCC-CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCCHHHHH
Confidence 9999998876544 45566666 8999999998664 457899999999999999988888876 46799999999
Q ss_pred HHHHhhcccchhhccCCCCCCceEEEE
Q 006094 212 HQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
++|...++|++ +|++|.+..||+||+
T Consensus 181 ~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 181 ARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp HHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred HHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 99988899977 899999999999995
No 6
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=3.8e-21 Score=202.34 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=155.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccce-----------------------eccCCcceEEEEECCCCCcHHHHHHHHH
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLL-----------------------AQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~-----------------------i~~ge~~~IIGI~GpSGSGKSTLak~La 87 (661)
..++++.++.+.|. .+++.+++. +.+|+ +|||+||||||||||+++|+
T Consensus 41 ~~~i~~~~v~~~y~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~---ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 41 GEQIDLLEVEEVYL------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPF---IIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp TCCCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCE---EEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEeeehhhhhh------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCE---EEEEECCCCchHHHHHHHHH
Confidence 44677777777762 345555553 45555 99999999999999999999
Q ss_pred HhC-C-----CceEEecCCcccccc---cccc--ccCCCCCCchhhHHHHHHhhhcccc-ccccccccccccccccceee
Q 006094 88 NFM-P-----SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLKEGKA-VQVPIYDFKSSSRIGYRTLE 155 (661)
Q Consensus 88 ~ll-p-----~~g~I~lD~~~~~~~---~i~~--~fq~p~~~d~~tl~enL~~L~~g~~-I~~P~yd~~~~~r~~~~~~~ 155 (661)
+++ | .++.+.+|++..... .+.+ .+..|..++...+.+.+..+..+.. ...|.|+...+++.......
T Consensus 112 gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al 191 (312)
T 3aez_A 112 ALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQV 191 (312)
T ss_dssp HHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEE
T ss_pred hhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHh
Confidence 987 4 367888888753321 1111 1344566777778888888775544 67788999888887643445
Q ss_pred ccCccEEEEEehhhhh----ccccCCCCEEEEEEcCchhHHHHHHHHHHHh---------------hCCCHHHHH----H
Q 006094 156 VPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEEII----H 212 (661)
Q Consensus 156 v~~a~VVIVEGilaL~----deLr~llDlkIfVdad~diRLiRRI~RDi~e---------------RG~s~EeVi----~ 212 (661)
+...+++|+||++++. ..+.+.+|.+|||+++.++++.|++.|.+.. .|.+.+++. +
T Consensus 192 ~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~ 271 (312)
T 3aez_A 192 VRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAARE 271 (312)
T ss_dssp ECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHH
T ss_pred ccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHH
Confidence 6778999999999997 4788999999999999999999999997753 267777766 6
Q ss_pred HHHhhcccchhhccCCCCCCceEEEECCCC
Q 006094 213 QISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (661)
Q Consensus 213 q~~~~v~P~~~~fIeP~k~~ADIII~N~~~ 242 (661)
+|...++|++.+||+|++..||+||+|+.+
T Consensus 272 ~~~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 272 IWRTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp HHHHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred HHHhccHHHHHHhccCCCCCCeEEEecCCC
Confidence 677788999999999999999999998753
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.82 E-value=2.9e-21 Score=201.03 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=136.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCCcccc-ccc----------cc-cccCC--CCCCchhhHHHH
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SRI----------ID-GNFDD--PRLTDYDTLLEN 126 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~~~~~-~~~----------i~-~~fq~--p~~~d~~tl~en 126 (661)
++++|||+||+||||||+++.|+..++ .+..|++|+++.. ... .+ ..++. +..|+...+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 356999999999999999999998763 2678999998742 111 11 24444 788888888888
Q ss_pred HHhhhcccccccccccc-----ccccccccce---eec-cCccEEEEEehhhh----hccccCCCCEEEEEEcCchhHHH
Q 006094 127 IRGLKEGKAVQVPIYDF-----KSSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLV 193 (661)
Q Consensus 127 L~~L~~g~~I~~P~yd~-----~~~~r~~~~~---~~v-~~a~VVIVEGilaL----~deLr~llDlkIfVdad~diRLi 193 (661)
+..+..++.+..|.|++ ..+.+..... ..+ .+.+++|+||++++ +..+.+.+|++|||++|.++++.
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888999999854 2233222111 123 35789999999998 35788999999999999999999
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceE------EEECCC
Q 006094 194 KRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI------KIINKF 241 (661)
Q Consensus 194 RRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADI------II~N~~ 241 (661)
||+.||..+||.+.++++++|..+ +|+|.+|++|.+..||+ +|+|++
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 999999999999999999999888 99999999999999999 666654
No 8
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.80 E-value=1.4e-19 Score=182.94 Aligned_cols=174 Identities=31% Similarity=0.541 Sum_probs=145.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCC---------ceEEecCCcccc--c-----c-ccccccCCCCCCchhhHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPS---------IAVITMDNYNDS--S-----R-IIDGNFDDPRLTDYDTLLEN 126 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~---------~g~I~lD~~~~~--~-----~-~i~~~fq~p~~~d~~tl~en 126 (661)
.++++|||+|++||||||+++.|+..++. +..++.|+++.. . . .-.++|.+|..+|...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 45789999999999999999999997731 237999998642 1 0 12357888999999999999
Q ss_pred HHhhhccccccccccccccccccccceeeccCccEEEEEehhhh-hccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC
Q 006094 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (661)
Q Consensus 127 L~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL-~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~ 205 (661)
|..+..+..+..|.|++..+.+.. ......+.++||+||++++ .+.+.+.+|.+|||+++.++++.|+..|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 999988888999999998887653 3334456789999999998 46777889999999999999999999998777899
Q ss_pred CHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 206 s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
+.+++.++|..++.+.|.++++|.+..||++|+
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 999999999988888999999999999999994
No 9
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.78 E-value=1.3e-18 Score=169.76 Aligned_cols=144 Identities=24% Similarity=0.381 Sum_probs=122.4
Q ss_pred cHHHHHHHHcccccccc--cceeeeecCCCCCCcccccceEEEe--ecCCeEEEEEeeeecCCCceeeeeeEEEee--hh
Q 006094 261 TVDEIKAVMSKEHTETT--EETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (661)
Q Consensus 261 ~~~~IravL~~l~~~~~--~~~~DIYl~pP~~df~~tde~LRvR--~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~--v~ 334 (661)
..+.+++.|...+.... ..+.|+||..|+. .|||+| ..++++.||||+|. ++++.++.+.+++|+ ..
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 45788888887654332 2355999998865 899999 56899999999999 888888889899887 35
Q ss_pred hHHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-cccchhHH
Q 006094 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIE 407 (661)
Q Consensus 335 ~~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~------~~~V~~~~~~Lgl~g~-~i~kSYLE 407 (661)
+...|..|||.+.+.+.|.|..|..++++|+||+++||| .|+||+... ++.+.+++++|||+.+ .+++||+|
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~e 169 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLE 169 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTT
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHH
Confidence 667788999999999999999999999999999999999 999998653 8899999999999876 78999999
Q ss_pred HHHHhh
Q 006094 408 QIQLEK 413 (661)
Q Consensus 408 li~lek 413 (661)
|+ +++
T Consensus 170 Ll-~~~ 174 (179)
T 1yem_A 170 LI-NEL 174 (179)
T ss_dssp TC----
T ss_pred HH-Hhh
Confidence 99 654
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.78 E-value=8.9e-20 Score=195.13 Aligned_cols=143 Identities=18% Similarity=0.166 Sum_probs=119.9
Q ss_pred eEEecCCccccccc---------cccccCCCCCCchhhHHHHHHhhhcc-----------------------------cc
Q 006094 94 AVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------KA 135 (661)
Q Consensus 94 g~I~lD~~~~~~~~---------i~~~fq~p~~~d~~tl~enL~~L~~g-----------------------------~~ 135 (661)
..|++|||+..+.. ....+.+|..||...+.+.+..|+++ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 46789999754322 23567889999999999999988877 57
Q ss_pred ccccccccccccccccceeeccCccEEEEEehhhhhc-----cccCCCC-----EEEEEEcCchhHHHHHHHHHHHhhCC
Q 006094 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (661)
Q Consensus 136 I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-----eLr~llD-----lkIfVdad~diRLiRRI~RDi~eRG~ 205 (661)
+..|.||+..+.+........+..++||+||++++.+ ++++++| ++|||++|.++++.|.+.|++. +|+
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence 8899999999988764443334469999999888875 3667899 9999999999999999999985 699
Q ss_pred --CHHHHHHHHHhhcccchhhccCCCCCCceEEEE
Q 006094 206 --EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (661)
Q Consensus 206 --s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~ 238 (661)
+.+++.++|...+.|+. ++|+|++.+||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 99999999999999987 899999999999984
No 11
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.77 E-value=2.3e-18 Score=167.97 Aligned_cols=141 Identities=16% Similarity=0.267 Sum_probs=120.0
Q ss_pred HHHHHHHHcccccc---cccceeeeecCCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeeEEEee--hh
Q 006094 262 VDEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (661)
Q Consensus 262 ~~~IravL~~l~~~---~~~~~~DIYl~pP~~df~~tde~LRvR~~d--g~~~Ltykgp~~d~~fi~rp~~ef~V~--v~ 334 (661)
.+.++..|...+.. ....+.|+||..|..++...+.|||+|..+ |.+.+|||||+.+.. .+++|+ ..
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~------~e~~v~d~~~ 93 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC------EASNIEDVSK 93 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE------EEEECSCHHH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE------EEEEcCCHHH
Confidence 46788888765543 233456999999999999999999999863 789999999998742 356666 46
Q ss_pred hHHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Ccccch
Q 006094 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRT 404 (661)
Q Consensus 335 ~~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~V~~~~~~Lgl~g-~~i~kS 404 (661)
+...|..|||.+++.+.|.|+.|..++++|+||+|+||| .|+||+.. .++.+.+++++|||+. +.+++|
T Consensus 94 ~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~s 172 (179)
T 3ghx_A 94 VQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRS 172 (179)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSC
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehh
Confidence 667788999999999999999999999999999999999 99999754 5688999999999987 578999
Q ss_pred hHHHH
Q 006094 405 YIEQI 409 (661)
Q Consensus 405 YLEli 409 (661)
|+||+
T Consensus 173 Y~eLl 177 (179)
T 3ghx_A 173 YRQLL 177 (179)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 12
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.77 E-value=2.8e-18 Score=166.92 Aligned_cols=148 Identities=24% Similarity=0.315 Sum_probs=126.3
Q ss_pred HHHHHHHcccccccc--cceeeeecCCCCCCcccccceEEEe----ecCCeEEEEEeeeecCCCceeeeeeEEEee-h--
Q 006094 263 DEIKAVMSKEHTETT--EETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVS-V-- 333 (661)
Q Consensus 263 ~~IravL~~l~~~~~--~~~~DIYl~pP~~df~~tde~LRvR----~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~-v-- 333 (661)
+.+...|.. ..... ..+.|+||..|+.++...+.|||+| ..++++.+|||+|..+....++++.++.|+ .
T Consensus 12 ~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~ 90 (183)
T 2een_A 12 DEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVD 90 (183)
T ss_dssp HHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHH
T ss_pred HHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHH
Confidence 455666665 43222 2355999999999999999999999 667999999999998888888999888886 2
Q ss_pred hhHHHHhhcCCeEEEEEEeeeeeeeeC-CEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCCcccc
Q 006094 334 RLLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVPR 403 (661)
Q Consensus 334 ~~~~gL~~LGf~~~a~V~R~re~y~~g-~~~i~lD~ve~Lg~~FveI~g~---------~~~~V~~~~~~Lgl~g~~i~k 403 (661)
.+.+.|..+||.+++.+.|.|+.|..+ ++.|++|++++|| +|+||+.. ..+.+.+++++||| .+.+++
T Consensus 91 ~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~ 168 (183)
T 2een_A 91 KYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLG-KFIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERR 168 (183)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCS
T ss_pred HHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCe-eEEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceec
Confidence 466677889999999999999999999 9999999999999 89999653 46889999999999 899999
Q ss_pred hhHHHHHHhhh
Q 006094 404 TYIEQIQLEKL 414 (661)
Q Consensus 404 SYLEli~lek~ 414 (661)
||+||+ +++.
T Consensus 169 sY~ell-~~~~ 178 (183)
T 2een_A 169 SYLELL-LEKR 178 (183)
T ss_dssp CHHHHH-HHTC
T ss_pred cHHHHH-Hhhh
Confidence 999999 6653
No 13
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.76 E-value=3.4e-18 Score=178.21 Aligned_cols=175 Identities=18% Similarity=0.309 Sum_probs=132.6
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEE-ecCCcccccc---cccc---------ccCCCCCCchhhH
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVI-TMDNYNDSSR---IIDG---------NFDDPRLTDYDTL 123 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp------~~g~I-~lD~~~~~~~---~i~~---------~fq~p~~~d~~tl 123 (661)
..++.+|||+|+||||||||++.|.+.++ ....+ ++|+|+.... .+.+ .+..|.+++...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 34577999999999999999999999882 14566 9999865331 1111 1235889999999
Q ss_pred HHHHHhhhcc------cccccccccccc----cccccc-ceeeccCccEEEEEehhhhh-cc------------------
Q 006094 124 LENIRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALS-EK------------------ 173 (661)
Q Consensus 124 ~enL~~L~~g------~~I~~P~yd~~~----~~r~~~-~~~~v~~a~VVIVEGilaL~-de------------------ 173 (661)
.+.+..+..| ..+..|.|++.. +++... ....+ +.+++|+||++++. ++
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n 186 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVN 186 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHH
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHH
Confidence 9999999888 678899999988 776542 23445 78999999998855 33
Q ss_pred ---------ccCCCCEE---EEEEcCchhHHHH-HHHH--HH-Hhh--CCCHHHHHHHHHhhcccchhhccCC-------
Q 006094 174 ---------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEP------- 228 (661)
Q Consensus 174 ---------Lr~llDlk---IfVdad~diRLiR-RI~R--Di-~eR--G~s~EeVi~q~~~~v~P~~~~fIeP------- 228 (661)
+++.+|++ |||+++.+.++.| |+.| ++ .++ |++.+++ .+|.++++|+|+.|++|
T Consensus 187 ~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 187 AKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccC
Confidence 35556666 9999988888887 8888 53 446 8999997 67889999988877655
Q ss_pred CCCCceEEEECC
Q 006094 229 DLQTAHIKIINK 240 (661)
Q Consensus 229 ~k~~ADIII~N~ 240 (661)
.+ .||+||.-+
T Consensus 266 ~~-~adlvl~~~ 276 (290)
T 1odf_A 266 GS-IATLTLGID 276 (290)
T ss_dssp SS-SEEEEEEEC
T ss_pred CC-CCCEEEEEC
Confidence 43 899998643
No 14
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.74 E-value=8.3e-19 Score=171.47 Aligned_cols=168 Identities=18% Similarity=0.321 Sum_probs=108.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCCccccccc-cccccC-----CCCCCchhhHHHHH-Hhhhcc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSSRI-IDGNFD-----DPRLTDYDTLLENI-RGLKEG 133 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~~~~~~~~-i~~~fq-----~p~~~d~~tl~enL-~~L~~g 133 (661)
++.+|||+|++||||||+++.|++.+ +. +..+..|.+...... ...... .+..+|...+.+.+ ..+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 34599999999999999999999986 22 233445665432110 000000 02456777776665 556677
Q ss_pred ccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHH
Q 006094 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (661)
Q Consensus 134 ~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q 213 (661)
..+..|.|++..+.... ........++||+||++++++.+.+.+|.+|||++|.++++.|.+.|+ +++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~ 171 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQK 171 (201)
T ss_dssp SEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------CHHH
T ss_pred CccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHH
Confidence 78888999887543322 233445678999999999988888999999999999999998888876 566777
Q ss_pred HHhhcccchhhccCCC--CCCceEEEECCC
Q 006094 214 ISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (661)
Q Consensus 214 ~~~~v~P~~~~fIeP~--k~~ADIII~N~~ 241 (661)
|...++|.++.|++|. +..||+||+|++
T Consensus 172 ~~~~~~~~~~~y~~~~~~~~~AD~vI~N~~ 201 (201)
T 1rz3_A 172 FINRYWKAEDYYLETEEPIKRADVVFDMTS 201 (201)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCSEEEC---
T ss_pred HHhheeHHHHHHhCCCCcHhhCcEEecCCC
Confidence 8777788888887765 689999999874
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.71 E-value=2.1e-19 Score=193.07 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=117.7
Q ss_pred cchhhhcccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEec
Q 006094 20 RDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (661)
Q Consensus 20 ~~~~~l~~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~l 98 (661)
+-+.......+..|+++.++++.|....+...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+
T Consensus 11 ~~~~~~~~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp ------------CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CccCCCCCCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 334445555556789999999999655556789999999999999 99999999999999999999998 89999999
Q ss_pred CCcccc----------ccccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-ccccccccccccc
Q 006094 99 DNYNDS----------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGY 151 (661)
Q Consensus 99 D~~~~~----------~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~ 151 (661)
+|.... ++.++++||++.+++..++.+|+..... +. .+.. ...+...++.+++
T Consensus 88 ~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGG 167 (366)
T 3tui_C 88 DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGG 167 (366)
T ss_dssp TTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHH
T ss_pred CCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence 997421 2458999999999999999999864221 10 0111 1234445566777
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.+++..++.++.++.+++.||+...+|.
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~ 196 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDP 196 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 77888888888888888899999999986
No 16
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.68 E-value=3.3e-16 Score=151.75 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=116.5
Q ss_pred HHHHHHHcccccc---cccceeeeecCCCCCCcccccceEEEeec--CCeEEEEEeeeecCCCceeeeeeEEEee--hhh
Q 006094 263 DEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (661)
Q Consensus 263 ~~IravL~~l~~~---~~~~~~DIYl~pP~~df~~tde~LRvR~~--dg~~~Ltykgp~~d~~fi~rp~~ef~V~--v~~ 335 (661)
+.+++.|...+.. ....+.|+||..|+.++...+.|||+|.. ++..+|+||||.. +++.+++|. ..+
T Consensus 21 ~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~------~~e~e~~v~~~~~~ 94 (179)
T 3n10_A 21 TTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGA------ERCEASNIEDVSKV 94 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSS------SBEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcc------ccceeeccCCHHHH
Confidence 5666777654332 22334599999999999999999999985 5778999999854 556666676 567
Q ss_pred HHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Ccccchh
Q 006094 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRTY 405 (661)
Q Consensus 336 ~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~V~~~~~~Lgl~g-~~i~kSY 405 (661)
...|..+||.+++.+.|.|+.|..+++.|++|+|++|| +|+||+.. .++.+.+++++|||+. +.+++||
T Consensus 95 ~~~l~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY 173 (179)
T 3n10_A 95 QSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSY 173 (179)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCH
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecH
Confidence 77789999999999999999999999999999999999 99999653 4678999999999976 5679999
Q ss_pred HHHH
Q 006094 406 IEQI 409 (661)
Q Consensus 406 LEli 409 (661)
+||+
T Consensus 174 ~eLL 177 (179)
T 3n10_A 174 RQLL 177 (179)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9998
No 17
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.68 E-value=3.8e-16 Score=149.31 Aligned_cols=140 Identities=24% Similarity=0.382 Sum_probs=117.1
Q ss_pred HHHHHHHHccccccc--ccceeeeecCCCCCCcccccceEEEe--ecCCeEEEEEeeeecCCCceeeeeeEEEee--hhh
Q 006094 262 VDEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (661)
Q Consensus 262 ~~~IravL~~l~~~~--~~~~~DIYl~pP~~df~~tde~LRvR--~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~--v~~ 335 (661)
.+.++..+...+... ...+.|+||..|.. .+||+| ..|+++.||||+|. +++..++++.+++|. ..+
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~ 83 (165)
T 2dc4_A 11 FEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGA 83 (165)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHH
T ss_pred HHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHH
Confidence 356666666533222 22455999988755 899999 56899999999999 888888999999886 345
Q ss_pred HHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-cccchhHHH
Q 006094 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIEQ 408 (661)
Q Consensus 336 ~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~------~~~V~~~~~~Lgl~g~-~i~kSYLEl 408 (661)
...|..|||.+...+.|.|..|..+++.|++|.++|+| .|+||+-.. ++.+.+++++|||..+ .+++||+||
T Consensus 84 ~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~el 162 (165)
T 2dc4_A 84 IELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIEL 162 (165)
T ss_dssp HHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHH
T ss_pred HHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHH
Confidence 56677899999999999999999999999999999999 999998653 8899999999999876 789999999
Q ss_pred H
Q 006094 409 I 409 (661)
Q Consensus 409 i 409 (661)
+
T Consensus 163 l 163 (165)
T 2dc4_A 163 I 163 (165)
T ss_dssp C
T ss_pred h
Confidence 8
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.60 E-value=1.4e-16 Score=170.84 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=114.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------- 103 (661)
.++++.++++.| +...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|...
T Consensus 3 ~~l~i~~ls~~y----~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSF----QNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEE----CCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 467888888777 56789999999999999 99999999999999999999998 8999999999632
Q ss_pred --cccccccccCCCCCCchhhHHHHHHhhhcccc----------------ccc-cccccccccccccceeeccCccEEEE
Q 006094 104 --SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (661)
Q Consensus 104 --~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~----------------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV 164 (661)
..+.++++||++.+|+..++.+|+........ +.. ...+...++.++++.+++.-++.++.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 12458999999999999999999975322100 111 12345556677778888888888888
Q ss_pred EehhhhhccccCCCCE
Q 006094 165 EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 156 ~P~lLLLDEPts~LD~ 171 (359)
T 3fvq_A 156 DPELILLDEPFSALDE 171 (359)
T ss_dssp CCSEEEEESTTTTSCH
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999899999998886
No 19
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.60 E-value=2.3e-15 Score=147.66 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=117.3
Q ss_pred HHHHHHHHccccc-c--cccceeeeecCCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeeEEEee--hh
Q 006094 262 VDEIKAVMSKEHT-E--TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (661)
Q Consensus 262 ~~~IravL~~l~~-~--~~~~~~DIYl~pP~~df~~tde~LRvR~~d--g~~~Ltykgp~~d~~fi~rp~~ef~V~--v~ 334 (661)
.+.++..|..... . ....+.|+||..|+.++...+.|||+|..+ +...+|+|||..++.. +++|. ..
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~ 95 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDS 95 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHH
Confidence 4677788876654 2 233455999999999999999999999753 5789999999887632 45554 25
Q ss_pred hHHHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCC-cccch
Q 006094 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGS-YVPRT 404 (661)
Q Consensus 335 ~~~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~V~~~~~~Lgl~g~-~i~kS 404 (661)
+.+.|.++||.+++.+.|.|+.|..+++.|++|.+++|| +|+||+-. ..+.+.+++++|||..+ .+++|
T Consensus 96 ~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~s 174 (189)
T 2aca_A 96 AQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRS 174 (189)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSC
T ss_pred HHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhh
Confidence 666778899999999999999999999999999999999 99999632 36899999999999864 68999
Q ss_pred hHHHHHHh
Q 006094 405 YIEQIQLE 412 (661)
Q Consensus 405 YLEli~le 412 (661)
|+||+ ++
T Consensus 175 Y~~ll-~~ 181 (189)
T 2aca_A 175 YKEIL-SA 181 (189)
T ss_dssp TTTSS-CC
T ss_pred HHHHH-Hh
Confidence 99998 44
No 20
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.57 E-value=3.2e-16 Score=169.27 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=113.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++++.| +...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 3 ~l~~~~l~~~y----g~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAER 75 (381)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred EEEEEeEEEEE----CCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHC
Confidence 46777877776 56789999999999999 99999999999999999999998 8999999999732 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.++
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 68999999999999999999864221 10 0111 1234556667777888888888888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 156 LLDEPts~LD~ 166 (381)
T 3rlf_A 156 LLDEPLSNLDA 166 (381)
T ss_dssp EEESTTTTSCH
T ss_pred EEECCCcCCCH
Confidence 88999988886
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.56 E-value=1.5e-15 Score=153.33 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=111.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------- 104 (661)
|+++.++++.|........+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 46788888877543334679999999999999 99999999999999999999998 89999999996321
Q ss_pred ----ccccccccCCCCCCchhhHHHHHHhhhc-----cc--------------cccccc-c-ccccccccccceeeccCc
Q 006094 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKE-----GK--------------AVQVPI-Y-DFKSSSRIGYRTLEVPSS 159 (661)
Q Consensus 105 ----~~~i~~~fq~p~~~d~~tl~enL~~L~~-----g~--------------~I~~P~-y-d~~~~~r~~~~~~~v~~a 159 (661)
.+.++++||++.+++..++.+++..... +. .+.... + +...+..++++.+++.-+
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 1248899999999999999999864210 00 011111 1 344556666777778888
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
+.++.++.+++.||+...+|.
T Consensus 158 ral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDS 178 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCH
T ss_pred HHHHcCCCEEEEeCCcccCCH
Confidence 888888888888999988886
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.55 E-value=1.8e-15 Score=156.69 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=107.5
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++++.|. +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 6 ~~l~i~~ls~~y~---~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYS---DGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECT---TSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEEC---CCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccH
Confidence 4788888877762 23459999999999999 99999999999999999999998 89999999997431
Q ss_pred ---ccccccccCCCC-CCchhhHHHHHHhhhccc----------------cccc-cccccccccccccceeeccCccEEE
Q 006094 105 ---SRIIDGNFDDPR-LTDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ---~~~i~~~fq~p~-~~d~~tl~enL~~L~~g~----------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
++.++++||+|. .+...++.+++....... .+.. ...+...+..++++.+++.-++.++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 235789999984 344678888886432110 0111 1233444556667777788888888
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 160 ~~P~lLlLDEPts~LD~ 176 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDP 176 (275)
T ss_dssp TCCSEEEEECTTTTCCH
T ss_pred cCCCEEEEECccccCCH
Confidence 88888888999988886
No 23
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.53 E-value=1.6e-15 Score=162.63 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=111.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++++.| +.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYF----GKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR 75 (359)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGT
T ss_pred EEEEEEEEEEE----CCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhC
Confidence 57777877776 45679999999999999 99999999999999999999998 8999999999632 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhccc---------c-------ccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~g~---------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+....... . +.. ...+...++.++++.+++.-++.++.++.++
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6899999999999999999997532110 0 111 1124445566677778888888888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 156 LLDEP~s~LD~ 166 (359)
T 2yyz_A 156 LFDEPLSNLDA 166 (359)
T ss_dssp EEESTTTTSCH
T ss_pred EEECCcccCCH
Confidence 88999988886
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.52 E-value=1.9e-15 Score=162.73 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=111.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
++++.++++.| +...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|...
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~ 75 (372)
T 1g29_1 3 GVRLVDVWKVF----GEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75 (372)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEE
T ss_pred EEEEEeEEEEE----CCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccccccc
Confidence 57787877776 45689999999999999 99999999999999999999998 8999999998532
Q ss_pred ---cccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEE
Q 006094 104 ---SSRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
..+.++++||++.+|+..++.+|+..... +. . +.. ...+...++.++++.+++.-++.++
T Consensus 76 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp CCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence 12458899999999999999999865221 10 0 111 1234445566777778888888888
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 156 ~~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDA 172 (372)
T ss_dssp TCCSEEEEECTTTTSCH
T ss_pred cCCCEEEECCCCccCCH
Confidence 88888888999988886
No 25
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.52 E-value=4.7e-15 Score=148.56 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=107.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 3 ~~l~~~~l~~~y----~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVI----RGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEE----CCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHH
Confidence 467888877766 44679999999999999 99999999999999999999998 88999999986421
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEE
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
.+.++++||++..++..++.+++..... +. .+.. ...+...+..++++..++.-++.+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1347899999999988899998864211 10 0011 112333445556666677777777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 156 ~~~p~lllLDEPt~~LD~ 173 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDS 173 (224)
T ss_dssp TTCCSEEEEESTTTTCCH
T ss_pred HcCCCEEEEeCCCCCCCH
Confidence 778888888888888886
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.52 E-value=1.6e-14 Score=147.50 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=107.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 6 ~~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 6 EILRTENIVKYF----GEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred cEEEEeeeEEEE----CCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 468888887766 45679999999999999 99999999999999999999998 88999999996421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhc----c-----------cc-------c-------cc-cccccccccccccc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE----G-----------KA-------V-------QV-PIYDFKSSSRIGYR 152 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~----g-----------~~-------I-------~~-P~yd~~~~~r~~~~ 152 (661)
.+.++++||++..++..++.+++..... + .. + .. ...+...+..++++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 1247899999999988899999875321 1 00 0 00 01122233445566
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.+++.-++.++.++.+++.||+...+|.
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~ 186 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAP 186 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 6677777777788888888898888886
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.51 E-value=2.1e-15 Score=162.49 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=106.6
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++.+.| +.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 11 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 83 (372)
T 1v43_A 11 EVKLENLTKRF----GNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR 83 (372)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGG
T ss_pred eEEEEEEEEEE----CCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhC
Confidence 57788877776 45679999999999999 99999999999999999999998 8999999999632 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+..... +. .+.. ...+...++.++++.+++.-++.++.++.++
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 163 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 68999999999999999999975321 10 0111 1234445567777888888888888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 164 LLDEP~s~LD~ 174 (372)
T 1v43_A 164 LMDEPLSNLDA 174 (372)
T ss_dssp EEESTTTTSCH
T ss_pred EEcCCCccCCH
Confidence 88999988886
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.50 E-value=2.4e-15 Score=161.56 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=110.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
++++.++++.| +.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKF----GNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDR 75 (362)
T ss_dssp CEEEEEEEEES----SSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGT
T ss_pred EEEEEeEEEEE----CCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHC
Confidence 57777777766 45679999999999999 99999999999999999999998 8999999999632 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEEehhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGila 169 (661)
.++++||++.+|+..++.+|+..... +. .+.. ...+...++.++++.+++.-++.++.++.++
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 68999999999999999999865211 10 0111 1234445566677777888888888888888
Q ss_pred hhccccCCCCE
Q 006094 170 LSEKLRPLIDL 180 (661)
Q Consensus 170 L~deLr~llDl 180 (661)
+.||+...+|.
T Consensus 156 LLDEP~s~LD~ 166 (362)
T 2it1_A 156 LLDEPLSNLDA 166 (362)
T ss_dssp EEESGGGGSCH
T ss_pred EEECccccCCH
Confidence 88888888886
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.50 E-value=2.6e-15 Score=160.50 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=109.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
|+++.++++.| +.. +++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 1 ml~~~~l~~~y----~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKW----KNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEEC----SSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEE----CCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhC
Confidence 46777777766 334 8999999999999 99999999999999999999998 8999999999643 124
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--c--c--c-------ccc-cccccccccccccceeeccCccEEEEEehhhhhc
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G--K--A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g--~--~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d 172 (661)
.++++||++.+|+..++.+|+..... + . . +.. ...+...++.++++.+++.-++.++.++.+++.|
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 58899999999999999999865321 1 0 0 111 1234445566777778888888888888888889
Q ss_pred cccCCCCE
Q 006094 173 KLRPLIDL 180 (661)
Q Consensus 173 eLr~llDl 180 (661)
|+...+|.
T Consensus 153 EP~s~LD~ 160 (348)
T 3d31_A 153 EPLSALDP 160 (348)
T ss_dssp SSSTTSCH
T ss_pred CccccCCH
Confidence 99988886
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.49 E-value=9.3e-15 Score=151.46 Aligned_cols=148 Identities=9% Similarity=-0.030 Sum_probs=104.6
Q ss_pred cccCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc
Q 006094 26 VKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (661)
Q Consensus 26 ~~~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~ 104 (661)
+.+....|+++.++++.| +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 14 ~~~~~~~~l~~~~l~~~y----~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 14 VPRGSHMLIQLDQIGRMK----QGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG 86 (279)
T ss_dssp -----CEEEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred CCCCCCceEEEEeEEEEE----CCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 555545578888887766 44679999999999999 99999999999999999999998 89999999986432
Q ss_pred ---------ccccccccCCCCC-Cc-hhhHHHHHHhhhc------c--c-----c-------ccc-cccccccccccccc
Q 006094 105 ---------SRIIDGNFDDPRL-TD-YDTLLENIRGLKE------G--K-----A-------VQV-PIYDFKSSSRIGYR 152 (661)
Q Consensus 105 ---------~~~i~~~fq~p~~-~d-~~tl~enL~~L~~------g--~-----~-------I~~-P~yd~~~~~r~~~~ 152 (661)
.+.++++||++.. ++ ..++.+++..... + . . +.. ...+......++++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp ---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred cccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 2347889998754 22 3488888754210 0 0 0 000 11233334455666
Q ss_pred eeeccCccEEEEEehhhhhccccCCCCE
Q 006094 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..++.-++.++.++.+++.||+...+|.
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDF 194 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 6777777788888888888999988886
No 31
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.49 E-value=1.2e-14 Score=149.38 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=108.0
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 23 ~~l~i~~l~~~y----~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSF----GSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEE----CCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccH
Confidence 368888877766 45679999999999999 99999999999999999999998 89999999996431
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhh---ccc-------c-------ccc-cccccccccccccceeeccCccEEE
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
.+.++++||++..|+..++.+++.... .+. . +.. ...+...+..++++..++.-++.++
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 234789999999998889999986521 110 0 011 1123334455666667777777788
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 176 ~~p~lllLDEPts~LD~ 192 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDP 192 (263)
T ss_dssp TCCSEEEEESTTTTSCH
T ss_pred CCCCEEEEeCCcccCCH
Confidence 88888888898888886
No 32
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.49 E-value=1.1e-14 Score=149.03 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=107.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
+++++.++++.| +...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 14 ~~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 14 GAVVVKDLRKRI----GKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CeEEEEEEEEEE----CCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 467888887766 45679999999999999 99999999999999999999998 88999999996431
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhc--cc-------c-------ccc-cccccccccccccceeeccCccEEEEEeh
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~-------~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.+.++++||++..++..++.+++..... +. . +.. ...+......++++..++.-++.++.++.
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2357899999999888899998864321 10 0 011 11233334455566667777777777788
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 167 lllLDEPts~LD~ 179 (256)
T 1vpl_A 167 LAILDEPTSGLDV 179 (256)
T ss_dssp EEEEESTTTTCCH
T ss_pred EEEEeCCccccCH
Confidence 8888888888886
No 33
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.49 E-value=1.1e-14 Score=149.22 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=109.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 5 ~~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 5 NKLHVIDLHKRY----GGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTT
T ss_pred ceEEEeeEEEEE----CCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccc
Confidence 378888887776 45679999999999999 99999999999999999999998 88999999986432
Q ss_pred --------------ccccccccCCCCCCchhhHHHHHHhhh---ccc--------------ccccc-c-ccccccccccc
Q 006094 105 --------------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQVP-I-YDFKSSSRIGY 151 (661)
Q Consensus 105 --------------~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~--------------~I~~P-~-yd~~~~~r~~~ 151 (661)
.+.++++||++..|+..++.+++.... .+. .+... . .+...+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 124789999999999889999986521 110 01111 1 23344556666
Q ss_pred ceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 152 ~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..++.-++.++.++.+++.||+...+|.
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~ 186 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDP 186 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 77777777788888888888999988886
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.48 E-value=6.5e-15 Score=157.76 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=114.3
Q ss_pred CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----
Q 006094 29 KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---- 103 (661)
Q Consensus 29 ~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~---- 103 (661)
+.+.++++.++++.|. +.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|...
T Consensus 10 ~~~~~l~~~~l~~~y~---g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYP---GGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp -CCEEEEEEEEEECCT---TSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred CCCceEEEEEEEEEEc---CCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC
Confidence 4567888888887762 33568999999999999 99999999999999999999998 8999999999632
Q ss_pred -cccccccccCCCCCCchhhHHHHHHhhhc--cc--------------cccc-cccccccccccccceeeccCccEEEEE
Q 006094 104 -SSRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 104 -~~~~i~~~fq~p~~~d~~tl~enL~~L~~--g~--------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
..+.++++||++.+|+..++.+|+..... +. .+.. ...+...++.++++.+++.-++.++.+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 23468999999999999999999865221 10 0111 123444556677777888888888888
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 164 P~lLLLDEP~s~LD~ 178 (355)
T 1z47_A 164 PQVLLFDEPFAAIDT 178 (355)
T ss_dssp CSEEEEESTTCCSSH
T ss_pred CCEEEEeCCcccCCH
Confidence 888888999998886
No 35
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=2.2e-14 Score=145.18 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=106.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.++++.| +...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|....
T Consensus 5 ~~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYY----GAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEE----CCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHH
Confidence 478888887766 34679999999999999 99999999999999999999998 89999999996421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhh-cc---cc----c--------ccc-ccccccccccccceeeccCccEEEEE
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLK-EG---KA----V--------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~-~g---~~----I--------~~P-~yd~~~~~r~~~~~~~v~~a~VVIVE 165 (661)
.+.++++||++..|+..++.+++.... .. .. + ... ..+...+..++++..++.-++.++.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 124789999999998889999987532 11 00 0 011 11222334455566667677777777
Q ss_pred ehhhhhccccCCCCE
Q 006094 166 GIYALSEKLRPLIDL 180 (661)
Q Consensus 166 GilaL~deLr~llDl 180 (661)
+.+++.||+...+|.
T Consensus 158 p~lllLDEPts~LD~ 172 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAP 172 (240)
T ss_dssp CSEEEEECTTTTCCH
T ss_pred CCEEEEcCCcccCCH
Confidence 778888888888886
No 36
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.47 E-value=1.3e-14 Score=155.38 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=110.6
Q ss_pred eeeeecccceeeeccCceE--EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc------
Q 006094 33 RYEIVPIEDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------ 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~--vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~------ 103 (661)
|+++.++++.| +.+. +|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|...
T Consensus 3 ~l~i~~l~~~y----~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 3 RIIVKNVSKVF----KKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CEEEEEEEEEE----GGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEE
T ss_pred EEEEEeEEEEE----CCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccc
Confidence 57788887777 3345 8999999999999 99999999999999999999998 8999999998632
Q ss_pred ----cccccccccCCCCCCchhhHHHHHHhhhcccc----------------ccc-cccccccccccccceeeccCccEE
Q 006094 104 ----SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 104 ----~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~----------------I~~-P~yd~~~~~r~~~~~~~v~~a~VV 162 (661)
..+.++++||++.+|+..++.+|+........ +.. ...+...++.++++.+++.-++.+
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 12458899999999999999999975322100 111 123444556667777788888888
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 156 ~~~P~lLLLDEP~s~LD~ 173 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDA 173 (353)
T ss_dssp TTCCSEEEEESTTTTSCG
T ss_pred HhCCCEEEEECCcccCCH
Confidence 888888888999988886
No 37
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.46 E-value=4.2e-14 Score=141.35 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=117.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc-----ccc-------cccc-cccCCCCCCchhhHHHHHH---
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN-----DSS-------RIID-GNFDDPRLTDYDTLLENIR--- 128 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~-----~~~-------~~i~-~~fq~p~~~d~~tl~enL~--- 128 (661)
.+.-|||+|+.||||||+++.|.. + +..+|+.|... ... ...+ ..|.....+|...+.+.+-
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 456899999999999999999998 4 67789988741 111 0111 2344445677777766552
Q ss_pred -hhhccccccccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCC
Q 006094 129 -GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (661)
Q Consensus 129 -~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s 206 (661)
.+...+.+.+|........... ....+++++|.+++|+ ..+...||.+|||++|.++++.|.+.|+ |.+
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~-----~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s 156 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREAR-----DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFT 156 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-----hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCC
Confidence 3444567888876544433322 1245689999999999 8888899999999999999988887776 999
Q ss_pred HHHHHHHHHhhcccchhhccCCCCCCceEEEECC-CCC
Q 006094 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK-FNP 243 (661)
Q Consensus 207 ~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~-~~p 243 (661)
.+++..++..+ +|..+ .++.||+||.|+ +++
T Consensus 157 ~eea~~ri~~Q-~~~ee-----k~~~AD~VIdN~~gsl 188 (210)
T 4i1u_A 157 REQVEAIIARQ-ATREA-----RLAAADDVIVNDAATP 188 (210)
T ss_dssp HHHHHHHHHHS-CCHHH-----HHHTCSEEEECSSCCH
T ss_pred HHHHHHHHHHc-CChHH-----HHHhCCEEEECCCCCH
Confidence 99999988544 55533 357899999998 754
No 38
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.46 E-value=6.5e-14 Score=136.38 Aligned_cols=167 Identities=16% Similarity=0.242 Sum_probs=105.1
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccccccccc------ccCCCCCCchhhHHHHHHhhhcc
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEG 133 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~------~fq~p~~~d~~tl~enL~~L~~g 133 (661)
++.-.++.+|+|+|++||||||+++.|++.+++...++.|.+......+.. .++.+..++...+.+.+..+..+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 444444569999999999999999999998766889999987543222111 12223345555565555544322
Q ss_pred ccccccccccccccccccceeeccCccEEEEEehhhhh-ccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHH
Q 006094 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (661)
Q Consensus 134 ~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~ 212 (661)
..+|.+... .......+++|+||++++. +.+.+.+|.+||++++.++++.|+.. |+++.+++..
T Consensus 95 --~~~~~~~~~--------~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~-----R~~~~e~~~~ 159 (207)
T 2qt1_A 95 --ARHSVVSTD--------QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRST-----RVYQPPDSPG 159 (207)
T ss_dssp --HTTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHH-----SCCSSCCCTT
T ss_pred --CCCCCcCCC--------eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHH-----cCCCccchHH
Confidence 122222111 1113456799999999886 46788999999999999987766543 3544444445
Q ss_pred HHHhhcccchhhccCCCCCCceEE--EECCC
Q 006094 213 QISETVYPMYKAFIEPDLQTAHIK--IINKF 241 (661)
Q Consensus 213 q~~~~v~P~~~~fIeP~k~~ADII--I~N~~ 241 (661)
+|...+++.|..+++.....+|.+ |+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~ 190 (207)
T 2qt1_A 160 YFDGHVWPMYLKYRQEMQDITWEVVYLDGTK 190 (207)
T ss_dssp HHHHTHHHHHHHHHHHGGGCSSCCEEEETTS
T ss_pred HHHHHHhHHHHHHHHHHHhcCCeEEEecCCC
Confidence 565566777665554444556655 66654
No 39
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.45 E-value=4.1e-14 Score=145.28 Aligned_cols=145 Identities=16% Similarity=0.162 Sum_probs=104.7
Q ss_pred eeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc----ccc
Q 006094 33 RYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~----~~~ 106 (661)
|+++.++++.|..+.. ...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhh
Confidence 5777787776621110 1579999999999999 99999999999999999999998 8999999999643 234
Q ss_pred ccccccCCC-CCCchhhHHHHHHhhhcc----cc-----------ccc---cccccccccccccceeeccCccEEEEEeh
Q 006094 107 IIDGNFDDP-RLTDYDTLLENIRGLKEG----KA-----------VQV---PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (661)
Q Consensus 107 ~i~~~fq~p-~~~d~~tl~enL~~L~~g----~~-----------I~~---P~yd~~~~~r~~~~~~~v~~a~VVIVEGi 167 (661)
.++++||+| ..+...++.+++...... .. +.. ...+...+..++++..++.-++.++.++.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 578999986 455667899998653211 00 011 11223334455566667777777788888
Q ss_pred hhhhccccCCCCE
Q 006094 168 YALSEKLRPLIDL 180 (661)
Q Consensus 168 laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 159 lllLDEPts~LD~ 171 (266)
T 2yz2_A 159 ILILDEPLVGLDR 171 (266)
T ss_dssp EEEEESTTTTCCH
T ss_pred EEEEcCccccCCH
Confidence 8888888888886
No 40
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.44 E-value=5e-14 Score=144.95 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=108.2
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.++++.++++.| +...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 10 ~~l~~~~l~~~~----~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 10 ALLEASHLHYHV----QQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82 (266)
T ss_dssp CEEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHH
T ss_pred ceEEEEeEEEEe----CCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHH
Confidence 477887777665 56789999999999999 99999999999999999999998 89999999997432
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhccc---c-----------ccc-cccccccccccccceeeccCccEEEE----
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII---- 164 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~-----------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIV---- 164 (661)
.+.+++++|++..+...++.+++....... . +.. ...+...+..++++..++.-++.++.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 234788999998877789999886432110 0 011 11233344556667777777777777
Q ss_pred --EehhhhhccccCCCCE
Q 006094 165 --EGIYALSEKLRPLIDL 180 (661)
Q Consensus 165 --EGilaL~deLr~llDl 180 (661)
++.+++.||+...+|.
T Consensus 163 ~~~p~lLllDEPts~LD~ 180 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDL 180 (266)
T ss_dssp SCCCEEEEECCCCSSCCH
T ss_pred CCCCCEEEEeCccccCCH
Confidence 8888888999988886
No 41
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.44 E-value=6.4e-14 Score=137.58 Aligned_cols=150 Identities=18% Similarity=0.236 Sum_probs=104.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc---------cccc-cccCCCCCCchhhHHHHH----Hh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS---------RIID-GNFDDPRLTDYDTLLENI----RG 129 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~---------~~i~-~~fq~p~~~d~~tl~enL----~~ 129 (661)
....+|||+|++||||||+++.|+..+ +...|+.|.+.... ...+ ..++ +..+|...+.+.+ ..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence 345799999999999999999999986 57789999873110 0111 2333 5566766665532 22
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
+...+.+.+|.+......+.. ...+++++|++++++..+...+|.+|||++|.++++.|.
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rl-------------- 147 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRN-------------- 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHC--------------
T ss_pred HHHHHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHH--------------
Confidence 334456777877665443322 014689999999998888899999999999999987665
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
+..|+ |. |.++.++.||+||+|++++
T Consensus 148 i~~q~-----~~---~~~~~~~~AD~vI~n~~~~ 173 (192)
T 2grj_A 148 READR-----RL---KFQEDIVPQGIVVANNSTL 173 (192)
T ss_dssp SSHHH-----HH---TTCTTCCCCSEEEECSSCH
T ss_pred HHhcC-----Cc---hhhhHHhcCCEEEECCCCH
Confidence 11233 22 3456788999999998744
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.43 E-value=4.9e-14 Score=140.81 Aligned_cols=141 Identities=15% Similarity=0.131 Sum_probs=105.7
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--ccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRII 108 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~--~~~~i 108 (661)
.++++.++++.| +. .+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.+
T Consensus 9 ~~l~~~~ls~~y----~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGY----DK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEES----SS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEe----CC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcE
Confidence 477888887766 34 79999999999999 99999999999999999999998 8899999998642 23457
Q ss_pred ccccCCCCCCchhhHHHHHHhhhc--c--cc----------ccccccccccccccccceeeccCccEEEEEehhhhhccc
Q 006094 109 DGNFDDPRLTDYDTLLENIRGLKE--G--KA----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (661)
Q Consensus 109 ~~~fq~p~~~d~~tl~enL~~L~~--g--~~----------I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deL 174 (661)
++++|++..|+..++.+++..... + .. .....++......++++..++.-+..++.++.+++.||+
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 899999998888899999864311 1 00 001111223334455666667667777777777888888
Q ss_pred cCCCCE
Q 006094 175 RPLIDL 180 (661)
Q Consensus 175 r~llDl 180 (661)
...+|.
T Consensus 161 ts~LD~ 166 (214)
T 1sgw_A 161 VVAIDE 166 (214)
T ss_dssp TTTSCT
T ss_pred CcCCCH
Confidence 888885
No 43
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.43 E-value=2.2e-14 Score=150.69 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=122.7
Q ss_pred ccCCCCCCCCcccccccchhhhcccCC-------CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCC
Q 006094 4 DTSSGADSPRRRPGLLRDQVQLVKKKD-------SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSG 76 (661)
Q Consensus 4 ~~~~~~~s~~r~~~ll~~~~~l~~~~~-------~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSG 76 (661)
+...+.++.+|++.+++..++...... ...+++.+++..|. +...+|++|||.+++|+ ++||+||||
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~---~~~~vL~~isl~i~~Ge---~vaivG~sG 90 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYA---DGRETLQDVSFTVMPGQ---TLALVGPSG 90 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESS---TTCEEEEEEEEEECTTC---EEEEESSSC
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcC---CCCceeeeeeEEEcCCC---EEEEECCCC
Confidence 445778899999999988776543221 12467777766652 24579999999999999 999999999
Q ss_pred CcHHHHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc---c----------
Q 006094 77 AGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---A---------- 135 (661)
Q Consensus 77 SGKSTLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~---------- 135 (661)
||||||+++|++++ |..|.|.+||.... ++.++++||+|.+|+ .++.+|+....... .
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 99999999999998 89999999997432 245899999999986 49999986432110 0
Q ss_pred ---c-ccc-cccc----ccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 ---V-QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 ---I-~~P-~yd~----~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+ ..| .|+. .....++++..++..++.++-++.+++.||+...+|.
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 0 011 1111 1123455666777777778888888888888888886
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.42 E-value=1.2e-13 Score=140.59 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=101.2
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEecCCcccc-----
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l--l-p~~g~I~lD~~~~~----- 104 (661)
|+++.+++..| +...+|+++||.+++|+ ++||+||||||||||+++|+++ + |+.|.|.++|....
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASI----DGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHH
T ss_pred eEEEEeEEEEE----CCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHH
Confidence 57777777666 44679999999999999 9999999999999999999998 5 78999999996421
Q ss_pred ---ccccccccCCCCCCchhhHHHHHHhhh---ccc---------cc-------cc--ccccccccc-ccccceeeccCc
Q 006094 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK---------AV-------QV--PIYDFKSSS-RIGYRTLEVPSS 159 (661)
Q Consensus 105 ---~~~i~~~fq~p~~~d~~tl~enL~~L~---~g~---------~I-------~~--P~yd~~~~~-r~~~~~~~v~~a 159 (661)
...++++||++..|+..++.+++.... .+. .+ .. ...+...+. .++++..++.-+
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 123678999999988888888875321 110 00 11 112333344 666677777777
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
+.++.++.+++.||+...+|.
T Consensus 156 raL~~~p~lllLDEPts~LD~ 176 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDI 176 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCH
T ss_pred HHHHcCCCEEEEeCCCcCCCH
Confidence 778888888888888888886
No 45
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.41 E-value=1.6e-13 Score=141.72 Aligned_cols=167 Identities=12% Similarity=0.200 Sum_probs=106.9
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc----ccc--------cccccccCCC-CCCchhhHHHHH--
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSS--------RIIDGNFDDP-RLTDYDTLLENI-- 127 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~----~~~--------~~i~~~fq~p-~~~d~~tl~enL-- 127 (661)
..++++|+|+|++||||||+++.|+.+ +...|+.|.+. ... ...+..+.++ ..++...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~l--g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKNL--GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHHH--TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHC--CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 345789999999999999999999964 56678887751 110 0112222222 234544432211
Q ss_pred --HhhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC
Q 006094 128 --RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (661)
Q Consensus 128 --~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~ 205 (661)
..+...+.+.+|.+......+.. .......++||+||.+++...+...+|.+|||++|.++++.|.+.|+ |+
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~ 223 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GL 223 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CC
T ss_pred CHHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CC
Confidence 11222234556654433332221 11122357899999998877777889999999999999888877765 88
Q ss_pred CHHHHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 206 s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
+.+++..++..+ ++.... + ..||++|+|++++
T Consensus 224 s~e~~~~ri~~q-~~~~~~-~----~~AD~vIdn~~s~ 255 (281)
T 2f6r_A 224 SEAAAQSRLQSQ-MSGQQL-V----EQSNVVLSTLWES 255 (281)
T ss_dssp CHHHHHHHHHTS-CCHHHH-H----HTCSEEEECSSCH
T ss_pred CHHHHHHHHHHc-CChHhh-H----hhCCEEEECCCCH
Confidence 999998888665 443322 2 3689999987643
No 46
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.39 E-value=2.2e-13 Score=138.16 Aligned_cols=138 Identities=21% Similarity=0.223 Sum_probs=104.7
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSR 106 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~ 106 (661)
|+++.++++.| +. +++++||.+++ + ++||+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 1 ml~~~~l~~~y----~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRL----GN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEE----TT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEe----CC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhC
Confidence 45677777666 22 49999999999 9 99999999999999999999998 8999999999632 234
Q ss_pred ccccccCCCCCCchhhHHHHHHhhhc--c-----c-------cccc-cccccccccccccceeeccCccEEEEEehhhhh
Q 006094 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G-----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~enL~~L~~--g-----~-------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
.++++||++..++..++.+++..... + . .+.. ...+...+..++++..++.-++.++.++.+++.
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 58899999999988899999864211 0 0 0111 112333445566677777778888888888888
Q ss_pred ccccCCCCE
Q 006094 172 EKLRPLIDL 180 (661)
Q Consensus 172 deLr~llDl 180 (661)
||+...+|.
T Consensus 151 DEPts~LD~ 159 (240)
T 2onk_A 151 DEPLSAVDL 159 (240)
T ss_dssp ESTTSSCCH
T ss_pred eCCcccCCH
Confidence 999998886
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.35 E-value=2.7e-13 Score=139.45 Aligned_cols=143 Identities=12% Similarity=0.120 Sum_probs=102.7
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEecCCcccc---
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l--l-p~~g~I~lD~~~~~--- 104 (661)
..|+++.++++.| +...+|+++||.+++|+ +++|+||||||||||+++|+++ + |+.|.|.++|....
T Consensus 18 ~~~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSV----EDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEE----TTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEE----CCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 3478888887766 44679999999999999 9999999999999999999998 3 67899999996421
Q ss_pred -----ccccccccCCCCCCchhhHHHHHHhhh------ccc----------c-------cccc--ccccccc-cccccce
Q 006094 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK------EGK----------A-------VQVP--IYDFKSS-SRIGYRT 153 (661)
Q Consensus 105 -----~~~i~~~fq~p~~~d~~tl~enL~~L~------~g~----------~-------I~~P--~yd~~~~-~r~~~~~ 153 (661)
...++++||++..++..++.+++.... .+. . +... ..+.... ..++++.
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 123678999998888777777664321 010 0 0111 1122222 2555666
Q ss_pred eeccCccEEEEEehhhhhccccCCCCE
Q 006094 154 LEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.-++.++.++.+++.||+...+|.
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 677777778888888888888888886
No 48
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.35 E-value=2.7e-13 Score=138.43 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=101.7
Q ss_pred ceeeeecccceeeeccC-ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
.|+++.+++..| + ...+++++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.. .+.++
T Consensus 3 ~~l~i~~l~~~y----~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~ 69 (253)
T 2nq2_C 3 KALSVENLGFYY----QAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIG 69 (253)
T ss_dssp EEEEEEEEEEEE----TTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEE
T ss_pred ceEEEeeEEEEe----CCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEE
Confidence 367888877766 3 4579999999999999 99999999999999999999998 78899982 34588
Q ss_pred cccCCCCCCchhhHHHHHHhhhc---c-----cc-----c-------cc-cccccccccccccceeeccCccEEEEEehh
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKE---G-----KA-----V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~---g-----~~-----I-------~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
++||++..++..++.+++..... + .. + .. ...+...+..++++..++.-++.++.++.+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999988888899999865321 1 00 0 00 112223344555666667777777777788
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 150 llLDEPts~LD~ 161 (253)
T 2nq2_C 150 ILLDEPTSALDL 161 (253)
T ss_dssp EEESSSSTTSCH
T ss_pred EEEeCCcccCCH
Confidence 888888888886
No 49
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.35 E-value=3.6e-13 Score=136.95 Aligned_cols=141 Identities=16% Similarity=0.265 Sum_probs=101.7
Q ss_pred eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------c
Q 006094 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (661)
Q Consensus 34 iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------~ 105 (661)
+++.++++.|. .+...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... +
T Consensus 8 ~~~~~l~~~y~--~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 8 ITFRNIRFRYK--PDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEESS--TTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred eeEEEEEEEeC--CCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 56666665551 124579999999999999 99999999999999999999998 89999999996421 2
Q ss_pred cccccccCCCCCCchhhHHHHHHhhhcccc---c-------cc-------c-----ccccccccccccceeeccCccEEE
Q 006094 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA---V-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVI 163 (661)
Q Consensus 106 ~~i~~~fq~p~~~d~~tl~enL~~L~~g~~---I-------~~-------P-----~yd~~~~~r~~~~~~~v~~a~VVI 163 (661)
+.++++||++.+|+ .++.+++........ + .. | ..+......++++..++.-++.++
T Consensus 83 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 83 RQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp HHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred hcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 34789999999887 499999864211100 0 00 0 001112345556666777777777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 162 ~~p~lllLDEPts~LD~ 178 (247)
T 2ff7_A 162 NNPKILIFDEATSALDY 178 (247)
T ss_dssp TCCSEEEECCCCSCCCH
T ss_pred cCCCEEEEeCCcccCCH
Confidence 78888888898888886
No 50
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.34 E-value=2.2e-13 Score=140.38 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=105.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----- 104 (661)
..++++.+++..|... +...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|....
T Consensus 14 ~~~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CCCEEEEEEEECCTTC-TTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CceEEEEEEEEEeCCC-CCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHH
Confidence 3578888887766210 12568999999999999 99999999999999999999998 88999999996421
Q ss_pred --ccccccccCCCCCCchhhHHHHHHhhhcc--c--ccc--------------cc-----ccccccccccccceeeccCc
Q 006094 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKEG--K--AVQ--------------VP-----IYDFKSSSRIGYRTLEVPSS 159 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~~tl~enL~~L~~g--~--~I~--------------~P-----~yd~~~~~r~~~~~~~v~~a 159 (661)
++.++++||++.+|+. ++.+++...... . .+. .| ..+......++++..++.-+
T Consensus 90 ~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 2347899999998874 999998652211 0 000 00 01222334555666677777
Q ss_pred cEEEEEehhhhhccccCCCCE
Q 006094 160 RIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (661)
+.++.++.+++.||+...+|.
T Consensus 169 raL~~~p~lllLDEPts~LD~ 189 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDA 189 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCH
T ss_pred HHHhcCCCEEEEECCccCCCH
Confidence 777778888888888888886
No 51
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.33 E-value=3.1e-13 Score=137.90 Aligned_cols=137 Identities=9% Similarity=0.041 Sum_probs=101.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~------ 104 (661)
.|+++.+++.. .+++++||.+++|+ +++|+||||||||||+++|++++ |+ |.|.++|....
T Consensus 3 ~~l~~~~l~~~--------~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 3 IVMQLQDVAES--------TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEEET--------TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHH
T ss_pred cEEEEEceEEE--------EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHH
Confidence 36677666543 47999999999999 99999999999999999999998 78 99999996421
Q ss_pred -ccccccccCCCCCCchhhHHHHHHhhhc-c--c-c-------ccc-cccccccccccccceeeccCccEEEEEeh----
Q 006094 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE-G--K-A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI---- 167 (661)
Q Consensus 105 -~~~i~~~fq~p~~~d~~tl~enL~~L~~-g--~-~-------I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGi---- 167 (661)
.+.+++++|++..|+..++.+++..... . . . +.. ...+...+..++++..++.-+..++.++.
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 2347899999998888899999864321 0 0 0 011 11233334455566667777777777787
Q ss_pred ---hhhhccccCCCCE
Q 006094 168 ---YALSEKLRPLIDL 180 (661)
Q Consensus 168 ---laL~deLr~llDl 180 (661)
+++.||+...+|.
T Consensus 151 ~~~lllLDEPts~LD~ 166 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDV 166 (249)
T ss_dssp TCCEEEESSTTTTCCH
T ss_pred CCeEEEEECCcccCCH
Confidence 8888899888886
No 52
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.32 E-value=4.6e-13 Score=134.53 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=100.1
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
+.++++.+++..|. .+...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++| .++
T Consensus 4 ~~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~ 72 (229)
T 2pze_A 4 TTEVVMENVTAFWE--EGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RIS 72 (229)
T ss_dssp CEEEEEEEEEECSS--TTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEE
T ss_pred cceEEEEEEEEEeC--CCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEE
Confidence 34778888776662 234578999999999999 99999999999999999999998 8999999987 378
Q ss_pred cccCCCCCCchhhHHHHHHhhhccc-----------cc----c-ccc-----cccccccccccceeeccCccEEEEEehh
Q 006094 110 GNFDDPRLTDYDTLLENIRGLKEGK-----------AV----Q-VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (661)
Q Consensus 110 ~~fq~p~~~d~~tl~enL~~L~~g~-----------~I----~-~P~-----yd~~~~~r~~~~~~~v~~a~VVIVEGil 168 (661)
+++|++..|+. ++.+++....... .+ . .|. .+......++++..++.-++.++.++.+
T Consensus 73 ~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 73 FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988875 8888886421100 00 0 010 0011234455566666666777777777
Q ss_pred hhhccccCCCCE
Q 006094 169 ALSEKLRPLIDL 180 (661)
Q Consensus 169 aL~deLr~llDl 180 (661)
++.||+...+|.
T Consensus 152 llLDEPts~LD~ 163 (229)
T 2pze_A 152 YLLDSPFGYLDV 163 (229)
T ss_dssp EEEESTTTTSCH
T ss_pred EEEECcccCCCH
Confidence 777888877775
No 53
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.32 E-value=2.2e-13 Score=137.83 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=101.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------c
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------S 104 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------~ 104 (661)
|+++.+++..|. +...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|... .
T Consensus 1 ml~~~~l~~~y~---~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 1 MLSARHVDFAYD---DSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74 (243)
T ss_dssp CEEEEEEEECSS---SSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCC
T ss_pred CEEEEEEEEEeC---CCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 456667766652 33568999999999999 99999999999999999999998 8899999998632 1
Q ss_pred ccccccccCCCCCCchhhHHHHHHhh-hcccc---c-------ccc-cc-----------ccccccccccceeeccCccE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGL-KEGKA---V-------QVP-IY-----------DFKSSSRIGYRTLEVPSSRI 161 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L-~~g~~---I-------~~P-~y-----------d~~~~~r~~~~~~~v~~a~V 161 (661)
++.+++++|++..|+. ++.+|+... ..... + ... .. +...+..++++..++.-++.
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 2357899999988874 899988642 11100 0 000 00 11123445556666766777
Q ss_pred EEEEehhhhhccccCCCCE
Q 006094 162 VIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (661)
++.++.+++.||+...+|.
T Consensus 154 l~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHCCSEEEEECCSCSSCS
T ss_pred HhcCCCEEEEECCcccCCH
Confidence 7777777778888888886
No 54
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.32 E-value=6.9e-13 Score=128.77 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=91.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc--cc----------cccc-ccCCCCCCchhhHHHHHH----
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SR----------IIDG-NFDDPRLTDYDTLLENIR---- 128 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~--~~----------~i~~-~fq~p~~~d~~tl~enL~---- 128 (661)
+++|||+|++||||||+++.|++ + +...++.|.+... .. ..+. .+.....++...+...+-
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~ 79 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDE 79 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHH
Confidence 36899999999999999999998 4 4556776664211 00 0110 111111122222211110
Q ss_pred hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHH
Q 006094 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (661)
Q Consensus 129 ~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~E 208 (661)
.+.....+.+|.+........ .....+.+|++++++++..+...+|.+|||++|.++++.|...|+ |.+.+
T Consensus 80 ~~~~l~~~~~p~v~~~~~~~~-----~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 80 DKLWLNNLLHPAIRERMKQKL-----AEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHHhccCHHHHHHHHHHH-----HhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 000012233444332221111 011235789999988876678899999999999999888777665 77888
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
++.+++..+ .+.. |..+.||++|+|++++
T Consensus 151 ~~~~r~~~q-~~~~-----~~~~~ad~vIdn~~~~ 179 (206)
T 1jjv_A 151 QIQRIMNSQ-VSQQ-----ERLKWADDVINNDAEL 179 (206)
T ss_dssp HHHHHHHHS-CCHH-----HHHHHCSEEEECCSCH
T ss_pred HHHHHHHhc-CChH-----HHHHhCCEEEECCCCc
Confidence 888888543 3332 2335789999988644
No 55
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.29 E-value=1.9e-13 Score=148.21 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=103.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS------- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~------- 104 (661)
..+++.++++.|. .+...+|++|||.+++|+ +++|+||||||||||+++|+++++..|.|.++|....
T Consensus 18 ~~i~~~~l~~~y~--~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYT--EGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESS--SSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEec--CCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH
Confidence 4678888887763 244678999999999999 9999999999999999999999877899999997421
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccc---------ccccc-cccccccc-----------ccccceeeccCccEEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---------AVQVP-IYDFKSSS-----------RIGYRTLEVPSSRIVI 163 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---------~I~~P-~yd~~~~~-----------r~~~~~~~v~~a~VVI 163 (661)
++.++++||++.+|+ .++.+|+....... .+... ..+...+. .++++.+++..++.++
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 245889999999997 58999885221100 00010 11222222 5566667777677777
Q ss_pred EEehhhhhccccCCCCE
Q 006094 164 IEGIYALSEKLRPLIDL 180 (661)
Q Consensus 164 VEGilaL~deLr~llDl 180 (661)
.++.+++.||+...+|.
T Consensus 172 ~~P~lLLLDEPts~LD~ 188 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDP 188 (390)
T ss_dssp TTCCEEEEESHHHHSCH
T ss_pred cCCCEEEEeCCccCCCH
Confidence 77777777777777775
No 56
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.28 E-value=1e-12 Score=134.56 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=103.4
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-------
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS------- 104 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~------- 104 (661)
.++++.+++..|... ....+|+++||.+++|+ +++|+||||||||||+++|+++++..|.|.++|....
T Consensus 16 ~~l~i~~l~~~y~~~-~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ-TNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTC-CSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCC-CcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHH
Confidence 468888887776311 11468999999999999 9999999999999999999999844899999996421
Q ss_pred ccccccccCCCCCCchhhHHHHHHhhhccc---cc-------c-------ccc-c----ccccccccccceeeccCccEE
Q 006094 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---AV-------Q-------VPI-Y----DFKSSSRIGYRTLEVPSSRIV 162 (661)
Q Consensus 105 ~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I-------~-------~P~-y----d~~~~~r~~~~~~~v~~a~VV 162 (661)
++.++++||++.+|+ .++.+|+....... .+ . .|. + +......++++..++.-++.+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 235789999999886 49999986421110 00 0 010 0 112234555666677777777
Q ss_pred EEEehhhhhccccCCCCE
Q 006094 163 IIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (661)
+.++.+++.||+...+|.
T Consensus 171 ~~~p~lllLDEPts~LD~ 188 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDS 188 (260)
T ss_dssp HHCCSEEEEECCCCTTCH
T ss_pred HcCCCEEEEECccccCCH
Confidence 778888888888888886
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.27 E-value=5.5e-13 Score=150.70 Aligned_cols=166 Identities=19% Similarity=0.189 Sum_probs=116.2
Q ss_pred CCCCCcccccccchhhhcccCC-------CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKKD-------SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~~-------~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
..|.+|+..+++.+++...... ...+++.+++..|. .+...+|+++||.+++|+ ++||+|||||||||
T Consensus 308 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~--~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKST 382 (578)
T 4a82_A 308 FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN--DNEAPILKDINLSIEKGE---TVAFVGMSGGGKST 382 (578)
T ss_dssp HHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSC--SSSCCSEEEEEEEECTTC---EEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcC--CCCCcceeeeEEEECCCC---EEEEECCCCChHHH
Confidence 3466788888876655432211 12466777665552 234568999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhcccc----------------c-
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA----------------V- 136 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~----------------I- 136 (661)
|+++|.+++ |..|.|.+||.... ++.+++++|+|.+|+. ++.+|+........ +
T Consensus 383 ll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
T 4a82_A 383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIM 461 (578)
T ss_dssp HHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 999999998 89999999997432 2358899999999975 99999853221100 0
Q ss_pred ccc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .++... ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 462 ~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~ 510 (578)
T 4a82_A 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510 (578)
T ss_dssp TSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred hCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 011 122111 23455666777777777777777777888888885
No 58
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.26 E-value=5.5e-13 Score=150.78 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=118.6
Q ss_pred CCCCCCcccccccchhhhccc--C---CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 8 GADSPRRRPGLLRDQVQLVKK--K---DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~--~---~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
+..+.+|+..+++.+++.... + ...++++.+++..|.. +...+++++||.+++|+ +++|+||||||||||
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTl 385 (582)
T 3b5x_A 311 GMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQG--KEKPALSHVSFSIPQGK---TVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCC--CCccccccceEEECCCC---EEEEECCCCCCHHHH
Confidence 345677888887765443211 1 1236778887766631 12568999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhh-cccc---cc-------------
Q 006094 83 TEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLK-EGKA---VQ------------- 137 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~-~g~~---I~------------- 137 (661)
++.|.+++ |+.|.|.+||... .++.+++++|+|.+|+. ++.+|+.... .... +.
T Consensus 386 l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (582)
T 3b5x_A 386 ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464 (582)
T ss_pred HHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHH
Confidence 99999998 8999999999642 12458899999999974 9999986532 1100 00
Q ss_pred -cc-cccc----ccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 -VP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 -~P-~yd~----~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .++. .....++++.+++.-++.++-++.+++.||+...+|.
T Consensus 465 ~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred hCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 01 0111 1123455677777788888888888888998888886
No 59
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.26 E-value=7e-13 Score=134.39 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=53.4
Q ss_pred CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCCHHHHHHHHHhhcccchhhccCCCCCCce-E
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-I 235 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~AD-I 235 (661)
...-+|++|-.+.. -+.+..|++|||+++.++|..|++.+...+ .+.+.+++.+++..++..+..+.+.|.+.+|| +
T Consensus 144 ~~~~~V~~gr~~~~-~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 144 EAPGLIADGRDMGT-IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp CSSCEEEEESSCCC-CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred hCCCEEEEeceece-eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 34457888865532 245568999999999999988887665443 35689999999988888888899999999999 7
Q ss_pred EEECCC
Q 006094 236 KIINKF 241 (661)
Q Consensus 236 II~N~~ 241 (661)
+|+|+.
T Consensus 223 ~Idts~ 228 (252)
T 4e22_A 223 VLDSTS 228 (252)
T ss_dssp EEECSS
T ss_pred EEECcC
Confidence 776654
No 60
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.25 E-value=7.5e-13 Score=133.73 Aligned_cols=136 Identities=17% Similarity=0.109 Sum_probs=98.3
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~ 111 (661)
++++.+++..|. .+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++| .++++
T Consensus 3 ~l~~~~l~~~y~--~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v 71 (237)
T 2cbz_A 3 SITVRNATFTWA--RSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYV 71 (237)
T ss_dssp CEEEEEEEEESC--TTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEE
T ss_pred eEEEEEEEEEeC--CCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEE
Confidence 577777776662 113568999999999999 99999999999999999999998 7899999998 37889
Q ss_pred cCCCCCCchhhHHHHHHhhhcc--cc-------------ccc-c-----ccccccccccccceeeccCccEEEEEehhhh
Q 006094 112 FDDPRLTDYDTLLENIRGLKEG--KA-------------VQV-P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 112 fq~p~~~d~~tl~enL~~L~~g--~~-------------I~~-P-----~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
+|++.. ...++.+++...... .. +.. | ..+......++++..++.-++.++.++.+++
T Consensus 72 ~Q~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 72 PQQAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp CSSCCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998865 456888888642210 00 000 0 0112233445556666777777777777777
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 151 LDEPts~LD~ 160 (237)
T 2cbz_A 151 FDDPLSAVDA 160 (237)
T ss_dssp EESTTTTSCH
T ss_pred EeCcccccCH
Confidence 7888887775
No 61
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.25 E-value=2e-12 Score=126.69 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=51.5
Q ss_pred CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC--CHHHHHHHHHhhcccchhhccCCCCCC-ce
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQT-AH 234 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~--s~EeVi~q~~~~v~P~~~~fIeP~k~~-AD 234 (661)
..+.+++||..+. ..+.+.+|++||++++.++++.|+..+ ..++|+ +.+++.+++..++.+.+.++.+|.... ++
T Consensus 122 ~~~~~vldg~~~~-~~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~ 199 (227)
T 1cke_A 122 ELPGLIADGRDMG-TVVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADA 199 (227)
T ss_dssp CTTCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTC
T ss_pred hCCCEEEECCCcc-ceEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCE
Confidence 3467899998543 345677999999999999988776544 345677 788898988887777787777887765 45
Q ss_pred EEEECC
Q 006094 235 IKIINK 240 (661)
Q Consensus 235 III~N~ 240 (661)
++|+|+
T Consensus 200 ~~Id~~ 205 (227)
T 1cke_A 200 LVLDST 205 (227)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888776
No 62
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.24 E-value=1.4e-12 Score=147.35 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCCCCcccccccchhhhccc-----CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKK-----KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~-----~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
..+.+|+..+++.+++.... ....++++.+++..|.. +...+++++||.+++|+ ++||+||||||||||+
T Consensus 312 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPG--REVPALRNINLKIPAGK---TVALVGRSGSGKSTIA 386 (582)
T ss_dssp HHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSS--SSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCC--CCCccccceeEEEcCCC---EEEEECCCCCCHHHHH
Confidence 34566777777655432211 11236777777666621 12568999999999999 9999999999999999
Q ss_pred HHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhh-cccc---cc--------------
Q 006094 84 EKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLK-EGKA---VQ-------------- 137 (661)
Q Consensus 84 k~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~-~g~~---I~-------------- 137 (661)
+.|.+++ |+.|.|.+||.... ++.+++++|+|.+|+. ++.+|+.... .... +.
T Consensus 387 ~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 465 (582)
T 3b60_A 387 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINK 465 (582)
T ss_dssp HHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 9999998 89999999997431 2357899999999985 9999997532 1100 00
Q ss_pred cc-cccc----ccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-~yd~----~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .++. .....++++.+++.-++.++-++.+++.||+...+|.
T Consensus 466 ~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b60_A 466 MDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_dssp STTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 01 1111 1123455666777777777778888888888888886
No 63
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.24 E-value=3.4e-12 Score=131.20 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=101.9
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc----ccccc
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SSRII 108 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~----~~~~i 108 (661)
|+++.++++.|....+...+++++||.++ |+ +++|+||||||||||+++|++++|+.|.|.++|... ..+.+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhhe
Confidence 46777777776321112679999999999 99 999999999999999999999888899999998632 13457
Q ss_pred c-cccCCCCCCchhhHHHHHHhhhc--cc----------cccc--cccccccccccccceeeccCccEEEEEehhhhhcc
Q 006094 109 D-GNFDDPRLTDYDTLLENIRGLKE--GK----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (661)
Q Consensus 109 ~-~~fq~p~~~d~~tl~enL~~L~~--g~----------~I~~--P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~de 173 (661)
+ +++|++.. ..++.+++..... .. .... ...+...+..++++..++.-++.++.++.+++.||
T Consensus 77 ~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 77 STNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp EECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 8 99999876 6788888864321 10 0111 11233344455566667777777777777777888
Q ss_pred ccCCCCE
Q 006094 174 LRPLIDL 180 (661)
Q Consensus 174 Lr~llDl 180 (661)
+...+|.
T Consensus 155 Pts~LD~ 161 (263)
T 2pjz_A 155 PFENVDA 161 (263)
T ss_dssp TTTTCCH
T ss_pred CccccCH
Confidence 8888885
No 64
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.20 E-value=1.3e-12 Score=148.44 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=114.6
Q ss_pred CCCCCcccccccchhhhcccC------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
..+.+|+..+++.+++..... ....+++.+++..|. +...+|+++||.+++|+ ++||+||||||||||
T Consensus 324 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~---~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYD---KKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTI 397 (598)
T ss_dssp HHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSS---SSSCSCCSEEEECCTTC---EEEEECCTTSSTTHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECC---CCCccccceEEEEcCCC---EEEEECCCCCcHHHH
Confidence 345678888877654432111 112467777766663 23468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc---cc--------------c
Q 006094 83 TEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---AV--------------Q 137 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~I--------------~ 137 (661)
++.|.+++ |+.|.|.+||.... ++.+++++|+|.+|+ .++.+|+....... .+ .
T Consensus 398 l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (598)
T 3qf4_B 398 VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH 476 (598)
T ss_dssp HHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHT
T ss_pred HHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHh
Confidence 99999998 89999999997432 235889999999987 49999986422110 00 0
Q ss_pred cc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 138 VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 138 ~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.| .++... ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 477 ~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~ 524 (598)
T 3qf4_B 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524 (598)
T ss_dssp STTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCH
T ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 01 111111 23455666777777777777777777888888885
No 65
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.17 E-value=1.6e-10 Score=116.87 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=105.1
Q ss_pred ceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEee--------------------hhhHHH
Q 006094 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--------------------VRLLGG 338 (661)
Q Consensus 279 ~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~--------------------v~~~~g 338 (661)
.+.|+||..|..+++..+.|||+|..+| +|+|.|-..+.-..+++.+ ++. ..+...
T Consensus 53 ~q~n~YfDTpd~~L~~~~~aLRiR~~~~---~tlK~p~~~g~~~~~~ey~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (234)
T 3bhd_A 53 TFRDTYYDTPELSLMQADHWLRRREDSG---WELKCPGAAGVLGPHTEYK-ELTAEPTIVAQLCKVLRADGLGAGDVAAV 128 (234)
T ss_dssp EEEEEEEECTTCHHHHTTCEEEEETTTE---EEEEEESSBTTBCTTSEEE-EECSHHHHHHHHHHHHTC---CCSSHHHH
T ss_pred eEEEEEeeCCChHHHhCCcEEEEECCCC---eEEecCCccCccCCcceec-cccCccchhhhhhhhhcCCccchhHHHHH
Confidence 3459999999999999999999998874 8889886554111122322 222 234455
Q ss_pred HhhcCCeEEEEEEeeeeeeee--------C-CEEEEeecccccCcceEEEE---------eccHHHHHHHHHHcCCCCCc
Q 006094 339 LMALGYTIATILKRSSHIFYD--------D-RVCVKTDWLEQLNRKYVQVQ---------GRDRLYVKYVGEQLGLDGSY 400 (661)
Q Consensus 339 L~~LGf~~~a~V~R~re~y~~--------g-~~~i~lD~ve~Lg~~FveI~---------g~~~~~V~~~~~~Lgl~g~~ 400 (661)
|..+||.+++.+.+.|+.|.. + ++.|+||.++ +|.+|+||+ ....+.+.+++++|||..+.
T Consensus 129 L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~ 207 (234)
T 3bhd_A 129 LGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQE 207 (234)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTC
T ss_pred HhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccc
Confidence 678999999999999999998 8 9999999999 995599996 23577899999999999888
Q ss_pred ccchhHHHHHHhhhccc
Q 006094 401 VPRTYIEQIQLEKLVND 417 (661)
Q Consensus 401 i~kSYLEli~lek~~~~ 417 (661)
++++|++.+ ++..-++
T Consensus 208 ~~~~k~~~~-l~~~~~~ 223 (234)
T 3bhd_A 208 TAPAKLIVY-LQRFRPQ 223 (234)
T ss_dssp CCCCHHHHH-HHHHCHH
T ss_pred cchHHHHHH-HHHhCHH
Confidence 999999999 7765443
No 66
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.17 E-value=1.5e-11 Score=118.96 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=90.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc-----cc---c----c-cccCCCCCCchhhHHHHH----Hh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RI---I----D-GNFDDPRLTDYDTLLENI----RG 129 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~-----~~---i----~-~~fq~p~~~d~~tl~enL----~~ 129 (661)
.+|+|+|++||||||+++.|++ + +...++.|.+.... .. + + ..|.....++...+.+.+ ..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 4899999999999999999999 5 56788888752210 00 0 0 001101112221111100 00
Q ss_pred hhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHH
Q 006094 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 130 L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~Ee 209 (661)
+.....+..|.+......... ......++|+||++++...+...+|.+|||++|.++++.|... ||.+.++
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~~----~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~-----R~~~~~~ 150 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKITK----NLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIK-----RGMSEED 150 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHH----HSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHH-----TCCCHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHH----hccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHH-----cCCCHHH
Confidence 000011122322211111100 0111268999999988777778899999999999887665543 3788888
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECCCC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~ 242 (661)
+..++..+ .+.. +....||++|+|+.+
T Consensus 151 ~~~~~~~~-~~~~-----~~~~~ad~vId~~~~ 177 (204)
T 2if2_A 151 FERRWKKQ-MPIE-----EKVKYADYVIDNSGS 177 (204)
T ss_dssp HHHHHTTS-CCHH-----HHGGGCSEECCCSSC
T ss_pred HHHHHHhC-CChh-----HHHhcCCEEEECCCC
Confidence 77777443 3321 224568999887643
No 67
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.17 E-value=4.8e-12 Score=143.40 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=115.1
Q ss_pred CCCCcccccccchhhhcccC-------CCce-eeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKK-------DSDR-YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~-------~~~~-iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
.+.+|+..+++.+++..... .... +++.+++..|... ....+|+++||.+++|+ ++||+|||||||||
T Consensus 310 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~vl~~isl~i~~G~---~~~ivG~sGsGKST 385 (595)
T 2yl4_A 310 GAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPAR-PEVPIFQDFSLSIPSGS---VTALVGPSGSGKST 385 (595)
T ss_dssp HHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSC-TTSEEEEEEEEEECTTC---EEEEECCTTSSSTH
T ss_pred HHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCC-CCCccccceEEEEcCCC---EEEEECCCCCCHHH
Confidence 45677777776544332110 0123 6777776666211 12469999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhcc---cc---c-----------
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG---KA---V----------- 136 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g---~~---I----------- 136 (661)
|+++|++++ |+.|.|.+||.... ++.+++++|+|.+|+ .++.+|+...... .. +
T Consensus 386 Ll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (595)
T 2yl4_A 386 VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 464 (595)
T ss_dssp HHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHH
Confidence 999999998 89999999997431 235789999999997 4999999643211 00 0
Q ss_pred ---ccc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 ---QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ---~~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .++... ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 465 ~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 011 122211 34455666777777777777888888888888886
No 68
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.16 E-value=2.8e-12 Score=145.28 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=115.5
Q ss_pred CCCCCcccccccchhhhcccC-------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK-------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~-------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
.++.+|+..+++.++...... ....+++.+++..|. .+...+|+++||.+++|+ +++|+|||||||||
T Consensus 310 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKST 384 (587)
T 3qf4_A 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYF--ENTDPVLSGVNFSVKPGS---LVAVLGETGSGKST 384 (587)
T ss_dssp HHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSS--SSSCCSEEEEEEEECTTC---EEEEECSSSSSHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcC--CCCCcceeceEEEEcCCC---EEEEECCCCCCHHH
Confidence 346678888887655433221 123467777766552 234568999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc---c-------------c-
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V- 136 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~-------------I- 136 (661)
|++.|.+++ |+.|.|.+||.... ++.+++++|+|.+|+. ++.+|+....... . +
T Consensus 385 ll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~ 463 (587)
T 3qf4_A 385 LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFII 463 (587)
T ss_dssp HHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHH
Confidence 999999998 89999999997432 2458899999999975 9999985322110 0 0
Q ss_pred ccc-ccc----cccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 QVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 ~~P-~yd----~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .++ ......++++.+++.-++.++-++.+++.||+...+|.
T Consensus 464 ~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp TSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred hcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 011 121 11223455666677777777777777777888887775
No 69
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.13 E-value=1.3e-10 Score=113.86 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=95.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-----c-------cccccc-cCCCCCCchhhHHHHHH---
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----S-------RIIDGN-FDDPRLTDYDTLLENIR--- 128 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~-----~-------~~i~~~-fq~p~~~d~~tl~enL~--- 128 (661)
++.+|+|+|++||||||+++.|++ + +...++.|.+... . ...+.. +.....++...+.+.+-
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP 80 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence 357999999999999999999998 4 5567777654210 0 011111 22122344433332221
Q ss_pred -hhhccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 129 -GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 129 -~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
.+...+.+..|.+......... ......+++++++++...+...+|.+|||++|.++++.|...|+ |.+.
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 151 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQ-----QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHH-----hcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 0111122333433222111111 00235678899888765577789999999999999876665553 6788
Q ss_pred HHHHHHHHhhcccchhhccCCCCCCceEEEECCCCC
Q 006094 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 208 EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
+++..++..+ .+.+.. ...||++|+|+.++
T Consensus 152 ~~~~~~~~~~-~~~~~~-----~~~ad~vId~~~~~ 181 (218)
T 1vht_A 152 EHVEQILAAQ-ATREAR-----LAVADDVIDNNGAP 181 (218)
T ss_dssp HHHHHHHHHS-CCHHHH-----HHHCSEEEECSSCT
T ss_pred HHHHHHHHhc-CChHHH-----HHhCCEEEECCCCH
Confidence 8777777543 343321 24579999988644
No 70
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.11 E-value=8.1e-11 Score=117.35 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=63.0
Q ss_pred CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC--CHHHHHHHHHhhcccchhhccCCCCCCce-
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH- 234 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~--s~EeVi~q~~~~v~P~~~~fIeP~k~~AD- 234 (661)
....+|++|.... ..+...+|++|||+++.++++.|++.|.. +||. +.+++.+++..++++.+.+++.|....+|
T Consensus 134 ~~~~~v~~g~~~~-~~~l~~~d~vi~L~a~~e~~~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~ 211 (236)
T 1q3t_A 134 QQGGIVMDGRDIG-TVVLPQAELKIFLVASVDERAERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDA 211 (236)
T ss_dssp TTSCEEEECSSCS-SSSGGGCSEEEEEECCHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTC
T ss_pred ccCCEEEECCcch-hhhccCCCEEEEEECCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCE
Confidence 3456778987543 23455689999999999999888777654 4553 88899999987788888888889887777
Q ss_pred EEEECCC
Q 006094 235 IKIINKF 241 (661)
Q Consensus 235 III~N~~ 241 (661)
++|+|++
T Consensus 212 ~vId~~~ 218 (236)
T 1q3t_A 212 VYLDTTG 218 (236)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 8888764
No 71
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.09 E-value=1.5e-11 Score=128.12 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=93.6
Q ss_pred cccccccchhhhcc----cCCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 14 RRPGLLRDQVQLVK----KKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 14 r~~~ll~~~~~l~~----~~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
|...+++...+-.. .....++++.+++.. ...+++++||.+++|+ +++|+||||||||||+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLL------GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC-----------------------------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhcccccccccccccCCCceEEEEEEEEc------CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcC
Confidence 56666655433211 111235666666542 2468999999999999 9999999999999999999999
Q ss_pred C-CCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccc----------cc----c-ccc-----cccccccc
Q 006094 90 M-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------AV----Q-VPI-----YDFKSSSR 148 (661)
Q Consensus 90 l-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------~I----~-~P~-----yd~~~~~r 148 (661)
+ |..|.|.++| .+++++|++..|+. ++.+++....... .+ . .|. .+......
T Consensus 88 ~~p~~G~I~~~g------~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L 160 (290)
T 2bbs_A 88 LEPSEGKIKHSG------RISFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160 (290)
T ss_dssp SCEEEEEEECCS------CEEEECSSCCCCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC
T ss_pred CCCCCcEEEECC------EEEEEeCCCccCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcC
Confidence 8 7899999987 37899999988875 8999886110000 00 0 010 00011344
Q ss_pred cccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 149 ~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
++++..++.-++.++.++.+++.||+...+|.
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 55566666666677777777777888777775
No 72
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.09 E-value=2.9e-11 Score=116.47 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=81.7
Q ss_pred cceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc--c-----cccccccccCCCCCCchhhHHHHHHh
Q 006094 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN--D-----SSRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~--~-----~~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
|+.+.+|+ +|||+|||||||||++++|++.+| .+..++.. . ....+++.|+++..|+.....+++
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF-- 72 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE--
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE--
Confidence 35566788 999999999999999999999986 23333321 1 122466788876655544332221
Q ss_pred hhcccccccccc-ccccccccccceeeccCccEEEEEehhhhhccccCCCC--EEEEEEcCchhHHHHHHHHHHHhhC-C
Q 006094 130 LKEGKAVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID--LRVSVTGGVHFDLVKRVFRDIQRVG-Q 205 (661)
Q Consensus 130 L~~g~~I~~P~y-d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llD--lkIfVdad~diRLiRRI~RDi~eRG-~ 205 (661)
.....+ ....+.........+.....+++++.......+...++ ..||+.++....+.+|+. .|| .
T Consensus 73 ------~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~----~R~~~ 142 (205)
T 3tr0_A 73 ------LEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLI----KRRQD 142 (205)
T ss_dssp ------EEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHH----TCTTS
T ss_pred ------EeeeeeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH----HhCCC
Confidence 111110 00000000000111334567788864333322332233 568888765444555543 334 3
Q ss_pred CHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 206 s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
+.+.+.+++. ...+.. .....||+||.|+
T Consensus 143 ~~~~i~~rl~-~~~~~~-----~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 143 DTAIIEQRLA-LAREEM-----AHYKEFDYLVVND 171 (205)
T ss_dssp CSSTHHHHHH-HHHHHH-----TTGGGCSEEEECS
T ss_pred CHHHHHHHHH-HHHHHH-----hcccCCCEEEECC
Confidence 4445545443 323332 2236789999987
No 73
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.08 E-value=1.6e-11 Score=130.91 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=97.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
.+|+|+||+|||||||++.|+..++ ...|++|++..... ....-..|..-....+..++..+..+.. ..+.++|..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~-~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~ 84 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQG-MDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKR 84 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTT-CCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-Cceecccccccccc-ccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHH
Confidence 5899999999999999999999984 67899999722110 0000000000000000001111222222 5566676655
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCCCEEEEEE-cCch--hHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchh
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYK 223 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVd-ad~d--iRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~ 223 (661)
.+.........+..+|+++|..++.+.+...+| +|++ +|.+ +|+.+++.| +.++|. +++.++...+.|.+.
T Consensus 85 a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~~l~~~L~~vdP~~a 158 (340)
T 3d3q_A 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---NKLHEYLASFDKESA 158 (340)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---HHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---HHHHHHHHhhCcHHH
Confidence 443212222356678888999877788888777 6788 8887 678889888 777775 478899999999999
Q ss_pred hccCC
Q 006094 224 AFIEP 228 (661)
Q Consensus 224 ~fIeP 228 (661)
++|.|
T Consensus 159 ~~I~p 163 (340)
T 3d3q_A 159 KDIHP 163 (340)
T ss_dssp HHSCT
T ss_pred hhcCc
Confidence 98887
No 74
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.08 E-value=1.7e-11 Score=150.32 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=116.5
Q ss_pred CCCCCcccccccchhhhcccC--------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKK--------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~--------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (661)
.++..|+..+++.++++.... ....+++.+++..|.. .....+|+++||.+++|+ ++||+||||||||
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~-~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPS-RKEVQILKGLNLKVKSGQ---TVALVGNSGCGKS 430 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSS-TTSCCSEEEEEEEECTTC---EEEEECCSSSSHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCC-CCCCcceecceEEEcCCC---EEEEECCCCCCHH
Confidence 345678888887766543211 0124677777666632 123568999999999999 9999999999999
Q ss_pred HHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc---c-------------c
Q 006094 81 VFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V 136 (661)
Q Consensus 81 TLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~---~-------------I 136 (661)
||+++|.+++ |+.|.|.+||.... ++.+++++|+|.+|+. ++.+|+..-.... . +
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 9999999998 89999999997422 2358899999999875 9999986432110 0 0
Q ss_pred -ccc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 -QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 -~~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .++... ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 112 122211 23455666777777777777777777888888885
No 75
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.07 E-value=3.9e-11 Score=115.13 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=93.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc-----cccccccCC---CCCCchhhHHHHHH----hhh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDD---PRLTDYDTLLENIR----GLK 131 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~-----~~i~~~fq~---p~~~d~~tl~enL~----~L~ 131 (661)
.++.+|+|+|++||||||+++.|+.. +...++.|.+.... ..+...|+. ...++...+.+.+. .+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 34679999999999999999999997 56678877652110 111111211 11223333322210 000
Q ss_pred ccccccccccccccccccccceeeccCccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHH
Q 006094 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (661)
Q Consensus 132 ~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi 211 (661)
....+.+|.+. ..... .....+.++||+|+++++...+.+.+|.+|||++|.++++.|...| .|.+.+++.
T Consensus 84 ~l~~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R----~~~~~~~~~ 154 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMAR----SGLSREEVL 154 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTT----TCCTTHHHH
T ss_pred HHHHHhChHHH---HHHHH--HhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHHH
Confidence 01112233332 11110 0111235799999998887767778899999999998877665544 266777776
Q ss_pred HHHHhhcccchhhccCCCCCCceEEEECCC
Q 006094 212 HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (661)
Q Consensus 212 ~q~~~~v~P~~~~fIeP~k~~ADIII~N~~ 241 (661)
.++.. ..+.+. ....||++|+|++
T Consensus 155 ~~i~~-~~~~~~-----~~~~ad~vId~~~ 178 (203)
T 1uf9_A 155 ARERA-QMPEEE-----KRKRATWVLENTG 178 (203)
T ss_dssp HHHTT-SCCHHH-----HHHHCSEEECCSS
T ss_pred HHHHH-CCChhH-----HHHhCCEEEECCC
Confidence 66643 334322 1346799987764
No 76
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.06 E-value=2.6e-10 Score=115.51 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=63.3
Q ss_pred cEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHh-hCCCHHHHHHHHHhhcccchhhccCCCCCCce-EEE
Q 006094 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKI 237 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~e-RG~s~EeVi~q~~~~v~P~~~~fIeP~k~~AD-III 237 (661)
.-+|+||-.+.. -+.+..|++|||+++.++|..||..+...+ .+.+.+++.+++.++...+..+++.|.+.++| ++|
T Consensus 129 ~~~V~~GRd~gt-~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~I 207 (233)
T 3r20_A 129 GRVVVEGRDIGT-VVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVV 207 (233)
T ss_dssp SCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEE
T ss_pred CcEEEeccccee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEE
Confidence 568889875542 244557899999999999998888776554 46789999999999999999999999999998 555
Q ss_pred EC
Q 006094 238 IN 239 (661)
Q Consensus 238 ~N 239 (661)
++
T Consensus 208 DT 209 (233)
T 3r20_A 208 DT 209 (233)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 77
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.03 E-value=4e-12 Score=156.15 Aligned_cols=166 Identities=15% Similarity=0.167 Sum_probs=110.4
Q ss_pred CCCCcccccccchhhhcccCC-------CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKKD-------SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~~-------~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (661)
.+.+|+..+++..+++..... ...+++.+++..|. ++....||+++||.+++|+ .|||+|+|||||||+
T Consensus 1046 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~-~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYP-ERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTV 1121 (1321)
T ss_dssp HHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCT-TSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSH
T ss_pred HHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCC-CCCCCccccceeEEECCCC---EEEEECCCCChHHHH
Confidence 455677777776655443221 12466666665552 2234468999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEecCCccc-------cccccccccCCCCCCchhhHHHHHHhhhc-c-----------------ccc
Q 006094 83 TEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKE-G-----------------KAV 136 (661)
Q Consensus 83 ak~La~ll-p~~g~I~lD~~~~-------~~~~i~~~fq~p~~~d~~tl~enL~~L~~-g-----------------~~I 136 (661)
++.|.+++ |..|.|.+||.+. .++.+++++|+|.+|+ .++++|+..-.. . ..|
T Consensus 1122 ~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A 1122 VALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200 (1321)
T ss_dssp HHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHH
Confidence 99999998 8999999999843 2356889999999997 488888642110 0 001
Q ss_pred -ccc-cccccccc----ccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 137 -QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 137 -~~P-~yd~~~~~----r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
..| .||...+. .++++.+++.-++.++-++..++.||....+|.
T Consensus 1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 112 13333322 344555556555555555555566777777774
No 78
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.03 E-value=1.5e-11 Score=151.16 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=114.1
Q ss_pred CCCCCCcccccccchhhhcccCCC--------ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcH
Q 006094 8 GADSPRRRPGLLRDQVQLVKKKDS--------DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGK 79 (661)
Q Consensus 8 ~~~s~~r~~~ll~~~~~l~~~~~~--------~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGK 79 (661)
+.+|.+|+..+++.++.+...... ..+++.+++..|.. .....+|+++||.+++|+ .++|+|||||||
T Consensus 382 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~-~~~~~vL~~isl~i~~G~---~vaivG~sGsGK 457 (1321)
T 4f4c_A 382 AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPS-RPDVPILRGMNLRVNAGQ---TVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSS-STTSCSEEEEEEEECTTC---EEEEEECSSSCH
T ss_pred HHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCC-CCCCceeeceEEeecCCc---EEEEEecCCCcH
Confidence 345678889998877665433221 13566666555521 224578999999999999 999999999999
Q ss_pred HHHHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc----------------c
Q 006094 80 TVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------A 135 (661)
Q Consensus 80 STLak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~----------------~ 135 (661)
||+++.|.+++ |..|.|.+||.... +..+++++|+|.+|+ .++++|+..-.... .
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhH
Confidence 99999999998 89999999997432 345899999999987 58888886422110 0
Q ss_pred cc-cc-ccccccc----cccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 VQ-VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 I~-~P-~yd~~~~----~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+. .| .|+-..+ ..++++.++++-++.++-+...++.||....+|.
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 11 12 1222222 2345566666666655556666666677776764
No 79
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.02 E-value=6.5e-10 Score=108.59 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred ccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCC--CHHHHHHHHHhhcccchhhccCCCCCCce-E
Q 006094 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-I 235 (661)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~--s~EeVi~q~~~~v~P~~~~fIeP~k~~AD-I 235 (661)
...+|++|..+ ...+.+.+|++|||++|.++++.|++.+. .+||. +.+++.+++..+..++..+.+.|....|| +
T Consensus 118 ~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~ 195 (219)
T 2h92_A 118 EKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAV 195 (219)
T ss_dssp TCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCE
T ss_pred CCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeE
Confidence 34578888643 23466778999999999999887776653 34676 88889888877766777777778777677 8
Q ss_pred EEECCC
Q 006094 236 KIINKF 241 (661)
Q Consensus 236 II~N~~ 241 (661)
+|+|+.
T Consensus 196 ~Id~~~ 201 (219)
T 2h92_A 196 TLDTTG 201 (219)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 888764
No 80
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.02 E-value=4.8e-11 Score=146.29 Aligned_cols=166 Identities=14% Similarity=0.183 Sum_probs=114.9
Q ss_pred CCCCcccccccchhhhcccC--------CCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHH
Q 006094 10 DSPRRRPGLLRDQVQLVKKK--------DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~--------~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (661)
.+..|+..+++..++..... ....+++.+++..|... ....+|+++||.+++|+ ++||+|+|||||||
T Consensus 999 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKST 1074 (1284)
T 3g5u_A 999 VSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQ---TLALVGSSGCGKST 1074 (1284)
T ss_dssp HHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG-GGCCSBSSCCEEECSSS---EEEEECSSSTTHHH
T ss_pred HHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCC-CCCeeecceeEEEcCCC---EEEEECCCCCCHHH
Confidence 34556666666554433211 12246777776666321 23468999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEecCCcccc-------ccccccccCCCCCCchhhHHHHHHhhhccc------------------c
Q 006094 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK------------------A 135 (661)
Q Consensus 82 Lak~La~ll-p~~g~I~lD~~~~~-------~~~i~~~fq~p~~~d~~tl~enL~~L~~g~------------------~ 135 (661)
|++.|.+++ |..|.|.+||.... ++.+++++|+|.+|+ .++.+|+....... .
T Consensus 1075 l~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~ 1153 (1284)
T 3g5u_A 1075 VVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153 (1284)
T ss_dssp HHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHH
Confidence 999999998 89999999997432 345889999998886 58888884211100 0
Q ss_pred cc-cc-cccccc----ccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 136 VQ-VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 136 I~-~P-~yd~~~----~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+. .| .|+-.. ...++++.+++.-++.++-++.+++.||+...+|.
T Consensus 1154 i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 10 12 122222 23455677777777888888888888999888886
No 81
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.00 E-value=1.8e-10 Score=110.87 Aligned_cols=73 Identities=11% Similarity=-0.013 Sum_probs=51.9
Q ss_pred cEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCce-EEEE
Q 006094 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 238 (661)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~AD-III~ 238 (661)
..+|+||..++ ..+.+.+|++|||++|.++++.|+..|+ +.+.+++.+.+..+....+..+ ...|| ++|+
T Consensus 119 ~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~----~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id 189 (208)
T 3ake_A 119 PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARER----PQAYEEVLRDLLRRDERDKAQS----APAPDALVLD 189 (208)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTS----SSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEE
T ss_pred CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhc----ccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEE
Confidence 57899999877 4567789999999999999877765553 4677888777765432222222 45677 8888
Q ss_pred CCC
Q 006094 239 NKF 241 (661)
Q Consensus 239 N~~ 241 (661)
|++
T Consensus 190 ~~~ 192 (208)
T 3ake_A 190 TGG 192 (208)
T ss_dssp TTT
T ss_pred CCC
Confidence 775
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.99 E-value=4.8e-10 Score=111.12 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=83.9
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccc--------cccccccccCCCCCCchhh
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND--------SSRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~--------~~~~i~~~fq~p~~~d~~t 122 (661)
..|++|||.+++|+ +++|+||||||||||+++|++++| |.|.+ +... ....++++|+++..|+..+
T Consensus 11 ~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 45899999999999 999999999999999999999986 55655 4311 1234678888766554321
Q ss_pred HHHHHHhhhcccccccccccccc-ccccccceeeccCccEEEEEehhhhhccccCCC---C-EEEEEEcCchhHHHHHHH
Q 006094 123 LLENIRGLKEGKAVQVPIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVTGGVHFDLVKRVF 197 (661)
Q Consensus 123 l~enL~~L~~g~~I~~P~yd~~~-~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll---D-lkIfVdad~diRLiRRI~ 197 (661)
..+..+....|.... +.........+....+++++..+..-...+..+ + ..+|+..+.-..+.++
T Consensus 85 --------~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~-- 154 (218)
T 1z6g_A 85 --------KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR-- 154 (218)
T ss_dssp --------HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH--
T ss_pred --------hccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH--
Confidence 111222221111110 000000001122234455553332223444444 4 7899987765544443
Q ss_pred HHHHhhCCCHHHHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 198 RDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 198 RDi~eRG~s~EeVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
...++...++.+.+......+... +.. ...+|.||.|+
T Consensus 155 --~~~~d~~~~~~i~~~l~~~~~~~~-~~h--~~~~d~iiv~~ 192 (218)
T 1z6g_A 155 --LLTRNTENQEQIQKRMEQLNIELH-EAN--LLNFNLSIIND 192 (218)
T ss_dssp --HHHTCCCCHHHHHHHHHHHHHHHH-HHT--TSCCSEEEECS
T ss_pred --HHhcCCCCHHHHHHHHHHHHHHHH-hhc--ccCCCEEEECC
Confidence 345565444444444444444433 222 36789998865
No 83
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.96 E-value=2.4e-10 Score=109.88 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=71.2
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EEecCCccc---cccccccccCCCCCCchhhHHHHHHhhhcc
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYND---SSRIIDGNFDDPRLTDYDTLLENIRGLKEG 133 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g-~I~lD~~~~---~~~~i~~~fq~p~~~d~~tl~enL~~L~~g 133 (661)
.+.+|+ +|+|+|||||||||+++.|++.+ |+.+ .+....... .....++.|+++..+.. + ...+
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~ 70 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA------L--IKDD 70 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHH------H--HHTT
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHH------H--HHcC
Confidence 456677 99999999999999999999998 6544 221111111 01124555654332211 1 2234
Q ss_pred ccccccccccccccccccce-eeccCccEEEEEehhhhhccccCCC-C-EEEEEEcC-chhHHHHHHHHHHHhhCCCHHH
Q 006094 134 KAVQVPIYDFKSSSRIGYRT-LEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGG-VHFDLVKRVFRDIQRVGQEPEE 209 (661)
Q Consensus 134 ~~I~~P~yd~~~~~r~~~~~-~~v~~a~VVIVEGilaL~deLr~ll-D-lkIfVdad-~diRLiRRI~RDi~eRG~s~Ee 209 (661)
..+..+.+............ ..+.....+|+|+.+.....+...+ | ..+|+.++ .++. .+|+..+ .+.+.+.
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~Rl~~R---~~~~~~~ 146 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHL-RERLVGR---GTESDEK 146 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC----------------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHH-HHHHHhc---CCCCHHH
Confidence 44444443321110000000 1123457899999887665555555 7 45555533 3343 3333221 1234444
Q ss_pred HHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 210 Vi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
+..++. ...+... ....||++|.|+
T Consensus 147 ~~~rl~-~~~~~~~-----~~~~~d~vI~n~ 171 (207)
T 2j41_A 147 IQSRIN-EARKEVE-----MMNLYDYVVVND 171 (207)
T ss_dssp ----------CGGG-----GGGGCSEEEECS
T ss_pred HHHHHH-HHHHHHh-----ccccCCEEEECC
Confidence 444442 2233221 235689999876
No 84
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.91 E-value=1.3e-09 Score=104.81 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=61.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc-----cccccccCCCCCCchhhHHHHHHhhhccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~-----~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd 142 (661)
+++|+|||||||||++++|.++++....+......... ...++.|+.+.. +...+. .+..+++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~-----~~~~~~---~~~~~e~~~~~ 74 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDE-----FKSMIK---NNEFIEWAQFS 74 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHH-----HHHHHH---TTCEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHH-----HHHHHh---hcceeeEEEEe
Confidence 89999999999999999999998532222222111111 112333333222 222111 22222222211
Q ss_pred ccc-ccccccceeeccCccEEEEE----ehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhh
Q 006094 143 FKS-SSRIGYRTLEVPSSRIVIIE----GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (661)
Q Consensus 143 ~~~-~~r~~~~~~~v~~a~VVIVE----GilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~ 217 (661)
... +.........+...+.++++ |...+.. ....--..|||.+|....+.+|+. .||...++.+.+....
T Consensus 75 ~~~yg~~~~~i~~~l~~g~~~il~~~~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~----~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 75 GNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSA 149 (186)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHT-CGGGCCEEEEEECSCC----------------------------
T ss_pred ceeccCcHHHHHHHHHcCCeEEEEEcHHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHH
Confidence 111 11100001123445677774 4433332 011223569999987555666654 3565554444433333
Q ss_pred cccchhhccCCCCCCceEEEECC
Q 006094 218 VYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 218 v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
...... +.. ...+|++|.|+
T Consensus 150 ~~~~~~-~~~--~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELA-YAE--TGAHDKVIVND 169 (186)
T ss_dssp ------------CCCCSEEEECS
T ss_pred HHHHHH-hhc--ccCCcEEEECc
Confidence 332211 111 36789999987
No 85
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.88 E-value=2.4e-11 Score=121.00 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=87.2
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-----------------ccccccccCCCCCCchhh
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----------------SRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~-----------------~~~i~~~fq~p~~~d~~t 122 (661)
..+|. +|+|.|++||||||+++.|++. . |.+.+.+.... ...+++.||.+.++. .
T Consensus 17 ~~~g~---~i~i~G~~GsGKSTl~~~L~~~-~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~--~ 88 (230)
T 2vp4_A 17 GTQPF---TVLIEGNIGSGKTTYLNHFEKY-K--NDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT--M 88 (230)
T ss_dssp TCCCE---EEEEECSTTSCHHHHHHTTGGG-T--TTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH--H
T ss_pred CCCce---EEEEECCCCCCHHHHHHHHHhc-c--CCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH--H
Confidence 34555 9999999999999999999987 2 22333332100 011122233211111 0
Q ss_pred HHHHHHh-----hhccccccccccccccccccccceeeccCccEEEEEehhhhhc-cccCCCCEEEEEEcCchhHHHHHH
Q 006094 123 LLENIRG-----LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (661)
Q Consensus 123 l~enL~~-----L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~diRLiRRI 196 (661)
+...+.. +..+..+..+.|.+.......+ .+.+..+.++++++.+.. .....+|++||+++|.++++.|..
T Consensus 89 ~~~~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~---~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~ 165 (230)
T 2vp4_A 89 LQSHTAPTNKKLKIMERSIFSARYCFVENMRRNG---SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIR 165 (230)
T ss_dssp HHHHHCCCCSSEEEEESCHHHHHHTHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHhccccCceeecCCccccHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHH
Confidence 1111110 1123344444455544332221 233445556666655442 356789999999999999877654
Q ss_pred HHHHHhhCCCHHHH-HHHHHhhcccchhhccCCC--CCCce-EEEECCCCC
Q 006094 197 FRDIQRVGQEPEEI-IHQISETVYPMYKAFIEPD--LQTAH-IKIINKFNP 243 (661)
Q Consensus 197 ~RDi~eRG~s~EeV-i~q~~~~v~P~~~~fIeP~--k~~AD-III~N~~~p 243 (661)
.| |++.+.. -..|.+.+...|.++.+.. ...++ ++|+++.++
T Consensus 166 ~R-----~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~ 211 (230)
T 2vp4_A 166 QR-----ARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNL 211 (230)
T ss_dssp HH-----CCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC--
T ss_pred Hc-----CCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCH
Confidence 33 4432221 1135556666677665432 34455 667666544
No 86
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.84 E-value=6.5e-10 Score=102.74 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=82.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
.+|+|+|++||||||+++.| ..+ +...++.++.......... ....+.....+.+... .+..+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~------- 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVAR------- 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHH-------
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHH-------
Confidence 48999999999999999999 655 4456666654211100000 0011111111111110 01111000
Q ss_pred cccccceeeccCccEEEEEehhhhh--cccc---CCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccc
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALS--EKLR---PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 221 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~--deLr---~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~ 221 (661)
... ..+.......+|++|..... ..+. ..-+..||+++|.++++.|...|+....+.+.+++.+++.....
T Consensus 68 -~~~-~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~-- 143 (179)
T 3lw7_A 68 -LCV-EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK-- 143 (179)
T ss_dssp -HHH-HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--
T ss_pred -HHH-HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--
Confidence 000 01111345678999973222 1222 23458999999999987777666544445788888887743211
Q ss_pred hhhccCCCCCCceEEEECCCCC
Q 006094 222 YKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 222 ~~~fIeP~k~~ADIII~N~~~p 243 (661)
..+++....||++|+|++++
T Consensus 144 --~~~~~~~~~ad~vId~~~~~ 163 (179)
T 3lw7_A 144 --LGIGEVIAMADYIITNDSNY 163 (179)
T ss_dssp --HTHHHHHHTCSEEEECCSCH
T ss_pred --cChHhHHHhCCEEEECCCCH
Confidence 11223446789999987644
No 87
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.84 E-value=1.7e-10 Score=114.34 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHH-HhCC
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMP 91 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La-~llp 91 (661)
....++||.+++|+ +|||+|||||||||++++|+ +++|
T Consensus 15 ~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34789999999999 99999999999999999999 9874
No 88
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.81 E-value=2.3e-09 Score=120.43 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=95.8
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.++...| +. ..++.++|.+.+|+ ++||+||||||||||+++|++++ |..|.|.+ ...+++
T Consensus 286 ~~l~~~~l~~~~----~~-~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~ 351 (538)
T 1yqt_A 286 TLVTYPRLVKDY----GS-FRLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAY 351 (538)
T ss_dssp EEEEECCEEEEE----TT-EEEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEE
T ss_pred eEEEEeeEEEEE----CC-EEEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEE
Confidence 467777776554 22 35899999999999 99999999999999999999998 77888875 235788
Q ss_pred ccCCCCCCchhhHHHHHHhh-hcc----c-------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 111 NFDDPRLTDYDTLLENIRGL-KEG----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L-~~g----~-------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
++|++..+...++.+++... ... . .... +..+...+..++++..++.-++.++.++.+++.||+...
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 89987665555666665433 100 0 0111 222344455666677777777777777888888899988
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 432 LD~ 434 (538)
T 1yqt_A 432 LDV 434 (538)
T ss_dssp CCH
T ss_pred CCH
Confidence 887
No 89
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.78 E-value=6.7e-09 Score=100.42 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=75.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc----cccccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~----~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
+.+|+|+|++||||||+++.|++.+ +...++.|.+.... ...+..|+. ......+..+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~~~~~~~~~~~g~~~~~------~~~~~~~~~l~~~-------- 82 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALHPPENIRKMSEGIPLTD------DDRWPWLAAIGER-------- 82 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGCCHHHHHHHHHTCCCCH------HHHHHHHHHHHHH--------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCcchhhHHHHhcCCCCCc------hhhHHHHHHHHHH--------
Confidence 4589999999999999999999987 34567777653211 012222221 1111112111100
Q ss_pred ccccccccccceeeccCccEEEEEehhhhh---ccccCCC---CEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHH
Q 006094 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS---EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (661)
Q Consensus 142 d~~~~~r~~~~~~~v~~a~VVIVEGilaL~---deLr~ll---DlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~ 215 (661)
+.....+|+++..+.. +.+.... +..||+++|.++++.|...|.. ....++++.++.
T Consensus 83 --------------~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~ 145 (202)
T 3t61_A 83 --------------LASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQL 145 (202)
T ss_dssp --------------HTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHH
T ss_pred --------------HhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHH
Confidence 0112334555544332 2232222 6899999999987666555441 112244444443
Q ss_pred hhcccchhhccCCCCCCceEEEECCCCC
Q 006094 216 ETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (661)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADIII~N~~~p 243 (661)
... -.+....++++|+++.++
T Consensus 146 ~~~-------~~~~~~~~~~~Id~~~~~ 166 (202)
T 3t61_A 146 ETL-------EDPRGEVRTVAVDVAQPL 166 (202)
T ss_dssp HHC-------CCCTTSTTEEEEESSSCH
T ss_pred Hhc-------CCCCCCCCeEEEeCCCCH
Confidence 332 234456689999877433
No 90
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.78 E-value=6.3e-08 Score=95.63 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred ceeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEeeh---------------hhHHHHhhcC
Q 006094 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMALG 343 (661)
Q Consensus 279 ~~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v---------------~~~~gL~~LG 343 (661)
...++||..|..++...+.+||+|..|+.+.+|+|+|..++ +++.+.+++. .+.+.|..+|
T Consensus 35 ~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~TlK~~~~~g----~~E~~~~l~~~ea~~~l~~~~~p~~~i~~~l~~~g 110 (195)
T 3tj7_A 35 KQVNHYFETPNSSLKEAGSALRIRHKGETYTLTLKQPAEVG----LLETHQVVTENEAKMMMETNVIISGAVMNQLCKLQ 110 (195)
T ss_dssp EEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSSS----EEEEEEEECHHHHHHHHHSSCCCSSHHHHHHHHHT
T ss_pred EEEEEEEeCCcHhHHhCCCEEEEEeECCeEEEEEeeCCCCC----ceEEEeeCCHHHHHHHhhcCCCChHHHHHHHHHcC
Confidence 44589999999999999999999999999999999998663 6777777773 4666789999
Q ss_pred CeE-----EEEEEeeeeeeeeCCEEEEeecccccCcc-e-EEEEe----ccHHHHHHHHHHcCCCCCc
Q 006094 344 YTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRK-Y-VQVQG----RDRLYVKYVGEQLGLDGSY 400 (661)
Q Consensus 344 f~~-----~a~V~R~re~y~~g~~~i~lD~ve~Lg~~-F-veI~g----~~~~~V~~~~~~Lgl~g~~ 400 (661)
|.. ++.+.+.|..|...+-++|+|+++++|.. | +|++. ..++.+.++.+++||...+
T Consensus 111 ~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 111 IPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp CCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 765 58998888888888889999999999933 5 45543 2677899999999999765
No 91
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.78 E-value=1.7e-09 Score=123.26 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=96.3
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.++.+.| +. ..++.++|.+.+|+ ++||+||||||||||+++|++++ |+.|.|.+ ...+++
T Consensus 356 ~~l~~~~l~~~~----~~-~~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~ 421 (607)
T 3bk7_A 356 TLVEYPRLVKDY----GS-FKLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAY 421 (607)
T ss_dssp EEEEECCEEEEC----SS-CEEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEE
T ss_pred eEEEEeceEEEe----cc-eEEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEE
Confidence 467777776554 22 25899999999999 99999999999999999999998 78888876 235788
Q ss_pred ccCCCCCCchhhHHHHHHhh-hc----cc-------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccCC
Q 006094 111 NFDDPRLTDYDTLLENIRGL-KE----GK-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L-~~----g~-------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (661)
++|++..+...++.+++... .. .. .+.. +..+...+..++++..++.-++.++-++.+++.||+...
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccC
Confidence 89987665555666665432 10 00 0111 223444555666677777777777777878888899888
Q ss_pred CCE
Q 006094 178 IDL 180 (661)
Q Consensus 178 lDl 180 (661)
+|.
T Consensus 502 LD~ 504 (607)
T 3bk7_A 502 LDV 504 (607)
T ss_dssp CCH
T ss_pred CCH
Confidence 887
No 92
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.77 E-value=2.9e-09 Score=119.78 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=96.1
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccccccccc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG 110 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~ 110 (661)
.++++.++.+.| +. ..+..++|.+.+|+ ++||+||||||||||+++|++++ |+.|.|.+++. .+++
T Consensus 268 ~~l~~~~l~~~~----~~-~~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~i~~ 334 (538)
T 3ozx_A 268 TKMKWTKIIKKL----GD-FQLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-----ILSY 334 (538)
T ss_dssp EEEEECCEEEEE----TT-EEEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----CEEE
T ss_pred ceEEEcceEEEE----CC-EEEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----eeEe
Confidence 356666666554 22 34778899999999 99999999999999999999998 88899987653 3556
Q ss_pred ccCCCCCCchhhHHHHHHhhhccc-------------cccc-cccccccccccccceeeccCccEEEEEehhhhhccccC
Q 006094 111 NFDDPRLTDYDTLLENIRGLKEGK-------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (661)
Q Consensus 111 ~fq~p~~~d~~tl~enL~~L~~g~-------------~I~~-P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (661)
.+|+.......++.+++....... .+.. ...+...+..++++.+++.-++.++.++.+++.||+..
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~ 414 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS 414 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 666655444566777765432110 0000 12334455566677777777788888888888899998
Q ss_pred CCCE
Q 006094 177 LIDL 180 (661)
Q Consensus 177 llDl 180 (661)
.+|.
T Consensus 415 gLD~ 418 (538)
T 3ozx_A 415 YLDV 418 (538)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 8886
No 93
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.76 E-value=3.5e-10 Score=107.71 Aligned_cols=78 Identities=21% Similarity=0.103 Sum_probs=62.5
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccc--cccccccCCCCCCchhhHHH
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLE 125 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~--~~i~~~fq~p~~~d~~tl~e 125 (661)
+...+++++||.+++|+ +++|.||||||||||++.|++.+|..|.|.++++.... ....+++|++.+| ..++.+
T Consensus 18 g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 44568999999999999 99999999999999999999999888999999875421 1123678888777 666666
Q ss_pred HHHh
Q 006094 126 NIRG 129 (661)
Q Consensus 126 nL~~ 129 (661)
++..
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 94
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.74 E-value=6.3e-09 Score=100.93 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=37.6
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc----ccccccccCCCCCCchhhHHH
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLE 125 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~----~~~i~~~fq~p~~~d~~tl~e 125 (661)
..+|+ +|+|+|+|||||||+++.|++.+ +...+..|.+... ....++.|+++..+++..+.+
T Consensus 26 ~~~g~---~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (200)
T 4eun_A 26 GEPTR---HVVVMGVSGSGKTTIAHGVADET-GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLA 91 (200)
T ss_dssp --CCC---EEEEECCTTSCHHHHHHHHHHHH-CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCc---EEEEECCCCCCHHHHHHHHHHhh-CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHH
Confidence 34556 99999999999999999999986 3334444433211 112456666544444333333
No 95
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.70 E-value=2.4e-09 Score=120.34 Aligned_cols=133 Identities=12% Similarity=0.169 Sum_probs=84.5
Q ss_pred eeeccCce-EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------ecCCcccc-------
Q 006094 43 LSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS------- 104 (661)
Q Consensus 43 ~s~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I---------~lD~~~~~------- 104 (661)
+++.++.. .++++++ .+++|+ ++||+||||||||||+++|++.+ |+.|.+ .++|....
T Consensus 27 ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 27 CVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp EEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 33333443 5899999 999999 99999999999999999999998 777764 23443110
Q ss_pred --ccccccccCCCCCCch---hhHHHHHHhhhc---------cccccccccccccccccccceeeccCccEEEEEehhhh
Q 006094 105 --SRIIDGNFDDPRLTDY---DTLLENIRGLKE---------GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (661)
Q Consensus 105 --~~~i~~~fq~p~~~d~---~tl~enL~~L~~---------g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL 170 (661)
...+++.+|....++. .++.+++..... .-.+. ...+...+..++++..++.-++.++.++.+++
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLl 181 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYF 181 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1123445554332221 144554432110 00111 12344455566667777777788888888888
Q ss_pred hccccCCCCE
Q 006094 171 SEKLRPLIDL 180 (661)
Q Consensus 171 ~deLr~llDl 180 (661)
.||+...+|.
T Consensus 182 LDEPTs~LD~ 191 (538)
T 1yqt_A 182 FDEPSSYLDI 191 (538)
T ss_dssp EESTTTTCCH
T ss_pred EECCcccCCH
Confidence 8999998886
No 96
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=1.4e-08 Score=101.31 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=86.4
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEecCCcccc---ccccccccCCCCCCchhhHHHHHHhhhc
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp---~~g~I~lD~~~~~---~~~i~~~fq~p~~~d~~tl~enL~~L~~ 132 (661)
..++|+ +++|+||||||||||+++|.+.++ ..|.+.+.+.... ...++|.|+++..|+..++.
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~-------- 80 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISR-------- 80 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHT--------
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhc--------
Confidence 466777 999999999999999999999984 3566666554321 13467888876655433321
Q ss_pred ccccccccc-ccccccccccceeeccCccEEEEEehhhhhccccCCC--CEEEEEEcCchhHHHHHHHHHHHhhCC-CHH
Q 006094 133 GKAVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI--DLRVSVTGGVHFDLVKRVFRDIQRVGQ-EPE 208 (661)
Q Consensus 133 g~~I~~P~y-d~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll--DlkIfVdad~diRLiRRI~RDi~eRG~-s~E 208 (661)
+...+.-.+ ....+.....-...+...+++|+|.-......+.+.+ ...||+.++.-..+.+|+ ..||. +++
T Consensus 81 ~~f~E~~~~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl----~~rG~~~~e 156 (219)
T 1s96_A 81 DAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRL----RGRGQDSEE 156 (219)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHH----HTTSCSCHH
T ss_pred CHHHHHHHHHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHH----HHcCCCCHH
Confidence 111111111 0000000000011233458889982222222333222 477888876544444443 55674 677
Q ss_pred HHHHHHHhhcccchhhccCCCCCCceEEEECC
Q 006094 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 209 eVi~q~~~~v~P~~~~fIeP~k~~ADIII~N~ 240 (661)
++..++....... +.....|++|.|+
T Consensus 157 ~i~~rl~~a~~e~------~~~~~~d~~i~Nd 182 (219)
T 1s96_A 157 VIAKRMAQAVAEM------SHYAEYDYLIVND 182 (219)
T ss_dssp HHHHHHHHHHHHH------TTGGGSSEEEECS
T ss_pred HHHHHHHHHHHHH------hhccCCCEEEECc
Confidence 7777775432111 1224568888885
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=1.1e-08 Score=99.21 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=30.7
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+...++++++|.+.++. +|+|+|++||||||+++.|++.+ +...++.|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~ 59 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWY 59 (199)
T ss_dssp --------------CCC---EEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHH
Confidence 44567999999999988 99999999999999999999987 3446666654
No 98
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.64 E-value=4.3e-09 Score=119.97 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=98.6
Q ss_pred eeeeecccc----eeeeccCce-EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------e
Q 006094 33 RYEIVPIED----TLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------T 97 (661)
Q Consensus 33 ~iei~~l~~----~~s~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I---------~ 97 (661)
++++.++++ .+++.++.. .++++++ .+++|+ ++||+||||||||||+++|++++ |+.|.+ .
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA 158 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHH
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhe
Confidence 466644422 233444444 4899999 999999 99999999999999999999998 777764 2
Q ss_pred cCCcccc---------ccccccccCCCCCCch---hhHHHHHHhhhcccc-------ccc-cccccccccccccceeecc
Q 006094 98 MDNYNDS---------SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVP 157 (661)
Q Consensus 98 lD~~~~~---------~~~i~~~fq~p~~~d~---~tl~enL~~L~~g~~-------I~~-P~yd~~~~~r~~~~~~~v~ 157 (661)
++|.... ...+++.+|....++. .++.+++........ +.. ...+...+..++++..++.
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva 238 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH
Confidence 3443110 1123344444322111 255555532110000 111 1234445566777777788
Q ss_pred CccEEEEEehhhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
-++.++.++.+++.||+...+|. .....+..+.+.+.+.|.+.
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~-------~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDI-------RQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhcCCCEEEEECCcccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 88888888888888999999986 23333344444444445543
No 99
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.63 E-value=6.3e-08 Score=91.17 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|+|+|++||||||+++.|++.+ +...++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCccc
Confidence 499999999999999999999876 3445555544
No 100
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.62 E-value=7e-08 Score=93.81 Aligned_cols=162 Identities=25% Similarity=0.291 Sum_probs=76.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhccccccccccccccc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~~ 146 (661)
.+|+|+|||||||||+++.|+..++..-...........+.....-.+....+.+.+.+. +..+..+..+.+.....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHhCCCee
Confidence 399999999999999999999987531122221111111100000001111222233222 22344444333322111
Q ss_pred ccc-ccceeeccCccEEEEEehhhhhccccCCC---C-EEEEEE-cCchhHHHHHHHHHHHhhCC-CHHHHHHHHHhhcc
Q 006094 147 SRI-GYRTLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVT-GGVHFDLVKRVFRDIQRVGQ-EPEEIIHQISETVY 219 (661)
Q Consensus 147 ~r~-~~~~~~v~~a~VVIVEGilaL~deLr~ll---D-lkIfVd-ad~diRLiRRI~RDi~eRG~-s~EeVi~q~~~~v~ 219 (661)
... ......+.....+|+++.+.....++..+ + ..|||+ ++.++ +.+|+ ..||. +.+.+..++.....
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~-l~~Rl----~~R~~~~~~~i~~rl~~~~~ 164 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDI-LLGRL----KNRNTEKPEEINKRMQELTR 164 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHH-HHHHH----HTCTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHH-HHHHH----HHcCCCCHHHHHHHHHHHHH
Confidence 100 00001234556788875433222333333 3 889999 56554 44444 34564 45565555543322
Q ss_pred cchhhccCCCCCCceEEEECC
Q 006094 220 PMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 220 P~~~~fIeP~k~~ADIII~N~ 240 (661)
+.... ....+|++|.|+
T Consensus 165 ~~~~~----~~~~~d~vi~n~ 181 (204)
T 2qor_A 165 EMDEA----DKVGFNYFIVND 181 (204)
T ss_dssp HHHHH----HHHTCSEEEECS
T ss_pred HHHHh----hhccCcEEEECc
Confidence 32110 235679999886
No 101
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.62 E-value=4.8e-08 Score=93.41 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=72.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCC--ceEEecCCccccc---cccccccCCCCCCchhhHHHHHHhhhccccccccccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~--~g~I~lD~~~~~~---~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd 142 (661)
+++|+||||||||||++.|.+.++. .+.++........ ....+.|.+ ...+...+ ..+..+....+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~-----~~~~~~~~---~~~~~l~~~~~~ 78 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVS-----HDQMMQDI---SNNEYLEYGSHE 78 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECC-----HHHHHHHH---HTTCEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeC-----HHHHHHHH---HcCCceEEEEEc
Confidence 9999999999999999999998742 2333322111110 112233332 22222222 223333332221
Q ss_pred ccc-ccccccceeeccCccEEEEEehhhhhccccCC--CCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcc
Q 006094 143 FKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (661)
Q Consensus 143 ~~~-~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l--lDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~ 219 (661)
... +.........+...++++++.-......++.. -...|||.+|...++.+| ++.++++.+...
T Consensus 79 ~n~yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R------------~~~i~r~~~~~~ 146 (180)
T 1kgd_A 79 DAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE------------DESLQRLQKESD 146 (180)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC------------SHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh------------HHHHHHHHHHHH
Confidence 111 11000001122445677775333222233321 247899999876666654 223355544433
Q ss_pred cchhhccCCCCCCceEEEECC
Q 006094 220 PMYKAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 220 P~~~~fIeP~k~~ADIII~N~ 240 (661)
++...+ ...+|++|+|+
T Consensus 147 ~~~~~~----~~~~d~~i~n~ 163 (180)
T 1kgd_A 147 ILQRTY----AHYFDLTIINN 163 (180)
T ss_dssp HHHHHH----GGGCSEEEECS
T ss_pred HHHHhh----hCCCcEEEECc
Confidence 332221 25689999986
No 102
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.60 E-value=5.5e-09 Score=119.94 Aligned_cols=148 Identities=10% Similarity=0.089 Sum_probs=78.3
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHH---------------------HHHHHhC-CCc-------eEEecCC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PSI-------AVITMDN 100 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa---------------------k~La~ll-p~~-------g~I~lD~ 100 (661)
..+|++|||.+++|+ ++||+||||||||||+ +.+.++. |+. +.+.+++
T Consensus 31 ~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp STTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 457999999999999 9999999999999997 6666665 553 3444444
Q ss_pred ccc---cccccccccCCCCC-------------------CchhhHHHHHHhhhcc------c------------------
Q 006094 101 YND---SSRIIDGNFDDPRL-------------------TDYDTLLENIRGLKEG------K------------------ 134 (661)
Q Consensus 101 ~~~---~~~~i~~~fq~p~~-------------------~d~~tl~enL~~L~~g------~------------------ 134 (661)
... ....+++++|.+.. +...++.+++...... .
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 321 12234444444332 2233444544321100 0
Q ss_pred ccccc--ccccccccccccceeeccCccEEEEEeh--hhhhccccCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCH
Q 006094 135 AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI--YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (661)
Q Consensus 135 ~I~~P--~yd~~~~~r~~~~~~~v~~a~VVIVEGi--laL~deLr~llDlkIfVdad~diRLiRRI~RDi~eRG~s~ 207 (661)
.+... ..+...+..++++..++.-++.++.++. +++.||+...+|. .....+..+.+.+.+.|.+.
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~-------~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ-------RDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 00000 1234445566666677777777776665 7777888888886 34444555555555556654
No 103
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.57 E-value=8.1e-09 Score=105.39 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=40.6
Q ss_pred ceeeeecc-cceeeeccCceEEEeeccceecc---CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 32 DRYEIVPI-EDTLSFEKGFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 32 ~~iei~~l-~~~~s~~~g~~~vL~~Isl~i~~---ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.++++.++ ++.| .+...+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+ +...++.|..
T Consensus 16 ~~l~~~~~~~~~~---~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d~~ 82 (250)
T 3nwj_A 16 ALLETGSLLHSPF---DEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL-GYTFFDCDTL 82 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CceEEcceeeEEe---cCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc-CCcEEeCcHH
Confidence 36777777 6655 1345689999999999 88 99999999999999999999976 3345555543
No 104
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=98.56 E-value=4.1e-07 Score=89.97 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=95.1
Q ss_pred cceeeeecCCCCCCcccccceEEEeecCC-----------eEEEEEeeeecCCCc-eeeeeeEEEeehhhH---------
Q 006094 278 EETYDIYLLPPGEDPDACQSYLRMRNRDG-----------KYNLMFEEWVTDSPF-IISPRITFEVSVRLL--------- 336 (661)
Q Consensus 278 ~~~~DIYl~pP~~df~~tde~LRvR~~dg-----------~~~Ltykgp~~d~~f-i~rp~~ef~V~v~~~--------- 336 (661)
..+.|+||..|..++...+.|||+|..++ ++.+|||+|...... ..+++.+.++.....
T Consensus 30 ~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 109 (210)
T 3v85_A 30 LHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAK 109 (210)
T ss_dssp EEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHHHCGGG
T ss_pred EEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCcCCCCceeEEEEeecCChhHHHHhhhhhhc
Confidence 34559999999999999999999998654 567999999887765 445666655553211
Q ss_pred ----------------HHHhhcCCeEEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec------cHHHHHHHHHHc
Q 006094 337 ----------------GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQL 394 (661)
Q Consensus 337 ----------------~gL~~LGf~~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~------~~~~V~~~~~~L 394 (661)
+.+..+|+++.+.+.+.|..|..++..|++|..+..+-+|+||+-. ..+.+.++++++
T Consensus 110 ~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~~~ELEle~~d~e~~~~~~~~lL~~~ 189 (210)
T 3v85_A 110 LSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTEE 189 (210)
T ss_dssp GGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHHHHHT
T ss_pred cccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcEEEEEEEEeCCHHHHHHHHHHHHHHc
Confidence 1124689999999999999999999999999999664389888533 466788889999
Q ss_pred CCCCC
Q 006094 395 GLDGS 399 (661)
Q Consensus 395 gl~g~ 399 (661)
||.-.
T Consensus 190 gI~~~ 194 (210)
T 3v85_A 190 KIEFS 194 (210)
T ss_dssp TCCEE
T ss_pred CCCcC
Confidence 99643
No 105
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=98.55 E-value=1.5e-06 Score=85.24 Aligned_cols=125 Identities=10% Similarity=0.065 Sum_probs=99.4
Q ss_pred eeeeecCCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeeEEEeeh---------------hhHHHHhhcCC
Q 006094 280 TYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMALGY 344 (661)
Q Consensus 280 ~~DIYl~pP~~df~~tde~LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v---------------~~~~gL~~LGf 344 (661)
..++||..|..+++..+.+||+|..|+.+.+|+|+|... .|++.+.+|+. .+.+.|.++|+
T Consensus 36 ~~n~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~----gR~E~e~~l~~~~~~~~l~~~~~p~~~~~~~l~~~~~ 111 (193)
T 2gfg_A 36 QRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPA----GLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSI 111 (193)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS----SEEEEEEEECHHHHHHHHHHCCCCCSHHHHHHHHTTC
T ss_pred eEEEeeeCCCHHHHhCCCEEEEEeeCCcEEEEEccCCCC----CCceEeccCCchhhhhhcccccCCcHHHHHHHHHhcC
Confidence 458999999999999999999999999999999999774 38998888872 34556677876
Q ss_pred e-----EEEEEEeeeeeeeeCCEEEEeecccccCcceEEEEec------cHHHHHHHHHHcCCCCCcccchhHHHH
Q 006094 345 T-----IATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDGSYVPRTYIEQI 409 (661)
Q Consensus 345 ~-----~~a~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~------~~~~V~~~~~~Lgl~g~~i~kSYLEli 409 (661)
. +++.+.+.|..|..++-.|++|.++.+|.++.||+-. ..+.+.+++.++|+...+- .|=++-.
T Consensus 112 ~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~ 186 (193)
T 2gfg_A 112 PISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPT-ENKIQRF 186 (193)
T ss_dssp CGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHH
T ss_pred CccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHH
Confidence 6 3788999999888888899999999999667777422 2356788889999975433 5555443
No 106
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.53 E-value=2.1e-08 Score=94.90 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=63.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccccc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~~~ 145 (661)
+.+|+|+|++||||||+++.|+..+ +...++.|........ .+.......+.+.+ ..|.....+......
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~~~~~~------~~~~~~~~~~~~~~---~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERK------NPDSQYGELIEKYI---KEGKIVPVEITISLL 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHH------CTTSTTHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHHHHHh------ccCChHHHHHHHHH---HCCCcCCHHHHHHHH
Confidence 5689999999999999999999876 3456777654211000 00000011111111 112111000000000
Q ss_pred ccccccceeeccCccEEEEEehhhhhc---cc----c--CCCCEEEEEEcCchhHHHHHHHHHH
Q 006094 146 SSRIGYRTLEVPSSRIVIIEGIYALSE---KL----R--PLIDLRVSVTGGVHFDLVKRVFRDI 200 (661)
Q Consensus 146 ~~r~~~~~~~v~~a~VVIVEGilaL~d---eL----r--~llDlkIfVdad~diRLiRRI~RDi 200 (661)
................+|+||...... .+ . ..+|..||+++|.++++.|...|+.
T Consensus 73 ~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 73 KREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 000000000112356788898754321 11 1 1468899999999998877777764
No 107
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.51 E-value=2.8e-07 Score=88.22 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=33.0
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+++...++. +|+|+|++||||||+++.|+..+.+...++.|..
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 3566666665 8999999999999999999998325667887765
No 108
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.50 E-value=1.6e-07 Score=88.70 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 40 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDL 40 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHHH
Confidence 4689999999999999999999876 3456666654
No 109
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.2e-08 Score=112.87 Aligned_cols=125 Identities=13% Similarity=-0.008 Sum_probs=82.9
Q ss_pred eEEEeeccceeccCCc--ceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccccccCCCCCCchhhHHHH
Q 006094 50 FIVIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~--~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~en 126 (661)
..++++++|.+.+|+- .-++||+||||||||||+++|++++ |+.|.. .....+++.+|+...+...++.++
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q~~~~~~~~tv~e~ 433 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQL 433 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECSSCCCCCCSBHHHH
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecccccccCCccHHHH
Confidence 4578999999999820 1189999999999999999999998 766642 112245667776544333455555
Q ss_pred HHhhhcccc------------cc-ccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 127 IRGLKEGKA------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 127 L~~L~~g~~------------I~-~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+.....+.. +. ....+...+..++++.+++.-++.++.++.+++.||+...+|.
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 434 FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp HHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 432111110 00 0123444556667777777777777888888888999988886
No 110
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.48 E-value=5.2e-07 Score=88.23 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=82.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccccc-ccc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDF-KSS 146 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~yd~-~~~ 146 (661)
.|.|+||||||||||++.|....|+.-.++.--....++.-...-.+....+...+. ..+..|..+++..|.. .-+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~---~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK---SMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHHTTCEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH---HHHHcCCEEEEEEEcCceee
Confidence 477999999999999999998876433333322222221111111111122223332 3344566666654322 122
Q ss_pred cccccceeeccCccEEEEEehhhhhccccCCC---CEEEEEEcCchhHHHHHHHHHHHhhCC-CHHHHHHHHHhhcccch
Q 006094 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQISETVYPMY 222 (661)
Q Consensus 147 ~r~~~~~~~v~~a~VVIVEGilaL~deLr~ll---DlkIfVdad~diRLiRRI~RDi~eRG~-s~EeVi~q~~~~v~P~~ 222 (661)
.....-...+...+.+|+++-.-....++..+ -..||+.+|....|.+|+. .||. +.+.+..++.....-+.
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~----~Rg~e~~e~i~~Rl~~a~~e~~ 155 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSAAQAELA 155 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHH----HHCCSCHHHHHHHHHHHHHHHH
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHh
Confidence 21110111233456778876555544444433 3679999988666666554 4575 55666666643322111
Q ss_pred hhccCCCCCCceEEEECC
Q 006094 223 KAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 223 ~~fIeP~k~~ADIII~N~ 240 (661)
.. ....-|+||.|+
T Consensus 156 ~~----~~~~fD~vIvNd 169 (186)
T 1ex7_A 156 YA----ETGAHDKVIVND 169 (186)
T ss_dssp HH----TTTCSSEEEECS
T ss_pred hc----cccCCcEEEECc
Confidence 11 112358888875
No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.47 E-value=1.1e-06 Score=84.53 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.++.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHH
Confidence 346799999999999999999999887 4567777754
No 112
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=1.8e-07 Score=91.50 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.0
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
++|. +|+|+|||||||||+++.|++.++
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 4455 999999999999999999999884
No 113
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.41 E-value=5.7e-08 Score=115.76 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=82.1
Q ss_pred eeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcccc-ccccccccCCC-CCCch
Q 006094 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-RLTDY 120 (661)
Q Consensus 43 ~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~-~~~i~~~fq~p-~~~d~ 120 (661)
+++.++...+|+++||.+.+|+ ++||+||||||||||+++|++- .+ +++... ...+.+.+|++ ..++.
T Consensus 441 ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~LagG-----~i--~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 441 FSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIANG-----QV--DGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHHT-----CS--TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred EEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCC-----Cc--CCCccccceeEEEEcccccccccC
Confidence 3344466789999999999999 9999999999999999999952 11 222111 11234566654 44555
Q ss_pred hhHHHHHHhhhcc---------ccccc--cccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 121 DTLLENIRGLKEG---------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 121 ~tl~enL~~L~~g---------~~I~~--P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
.++.+++.....+ ..+.. ...+...+..++++..++.-++.++.++.+++.||+...+|.
T Consensus 511 ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp SBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred CcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 6666666420000 00111 112334455566666777777777777777778888888886
No 114
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.37 E-value=9.5e-08 Score=91.20 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHH-HHHHhhcccchhhccCCCC-CCceEEEECCC
Q 006094 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII-HQISETVYPMYKAFIEPDL-QTAHIKIINKF 241 (661)
Q Consensus 176 ~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi-~q~~~~v~P~~~~fIeP~k-~~ADIII~N~~ 241 (661)
...|..|||++|.++++.|-. .||+..+... ..+.+.+...|..+.+++. ..+|++|+++.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~-----~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIK-----KRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHH-----HHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHH-----HcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 568999999999988665432 2355443211 1233334444554444444 67899998765
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.34 E-value=3.4e-08 Score=103.75 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCCCCcccccccchhhhcccCCC-----ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 9 ADSPRRRPGLLRDQVQLVKKKDS-----DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 9 ~~s~~r~~~ll~~~~~l~~~~~~-----~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
..+..|+..+++.+.+....... .++++.+++..| + ..+|++++|.+++|+ +++|+||||||||||+
T Consensus 72 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y----~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 72 ETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELIT----F-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHH----H-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEc----C-hhhhccceEEecCCC---EEEEECCCCCcHHHHH
Confidence 34677888888876554332211 135555655555 2 458999999999999 9999999999999999
Q ss_pred HHHHHhCCCceEEec
Q 006094 84 EKVLNFMPSIAVITM 98 (661)
Q Consensus 84 k~La~llp~~g~I~l 98 (661)
+.|.+++ .|.|..
T Consensus 144 ~lL~gl~--~G~I~~ 156 (305)
T 2v9p_A 144 NSLIHFL--GGSVLS 156 (305)
T ss_dssp HHHHHHH--TCEEEC
T ss_pred HHHhhhc--CceEEE
Confidence 9999997 566643
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.34 E-value=7.9e-07 Score=82.47 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|+|+|++||||||+++.|++.+ +...++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccc
Confidence 489999999999999999999886 3445666654
No 117
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.31 E-value=1.4e-07 Score=91.97 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=39.7
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecC--Ccc---ccccccccccCCCCCCchhh
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD--NYN---DSSRIIDGNFDDPRLTDYDT 122 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD--~~~---~~~~~i~~~fq~p~~~d~~t 122 (661)
+...++++ ..+++|+ +++|+||||||||||+++|+++++.. .+..+ +.. ...+.+++.||++..|+..+
T Consensus 7 ~~~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~i-~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 7 DTKPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPNL-HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp --------------CCC---EEEEECSTTSSHHHHHHHHHHHSTTC-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCce-EEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 44567788 6899999 99999999999999999999998521 12111 111 11234778888876655444
Q ss_pred H
Q 006094 123 L 123 (661)
Q Consensus 123 l 123 (661)
+
T Consensus 81 ~ 81 (207)
T 1znw_A 81 D 81 (207)
T ss_dssp H
T ss_pred h
Confidence 3
No 118
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.31 E-value=6.2e-08 Score=92.40 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|+|+|++||||||+++.|+..+ +...++.|.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 46 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGEL 46 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 3499999999999999999999986 3556777664
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.27 E-value=2.3e-07 Score=101.85 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=69.8
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc---c----
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---D---- 103 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~---~---- 103 (661)
.++++.++.+.|.. ...+|+++ |.+.+|+ +++|.||||||||||+++|+++. |+.|.|.++|.. .
T Consensus 130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHH
T ss_pred CceEEeccceecCC---CceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHH
Confidence 45667777766632 34689999 9999999 99999999999999999999998 789999998862 1
Q ss_pred --------cccccccccCC-CCCCchhhHHHHHHh
Q 006094 104 --------SSRIIDGNFDD-PRLTDYDTLLENIRG 129 (661)
Q Consensus 104 --------~~~~i~~~fq~-p~~~d~~tl~enL~~ 129 (661)
..+.+.+++|+ ...+.+.++.+++..
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 11235678874 445667777777654
No 120
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.26 E-value=4.2e-07 Score=95.02 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------------ccccccccCCCC-CC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPR-LT 118 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------------~~~i~~~fq~p~-~~ 118 (661)
..++|.+.+|+ +++|+|||||||||++++|++++ |..|.+.+++.... ...+++++|++. .+
T Consensus 91 ~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 56888888888 99999999999999999999998 66677777664211 123678899888 88
Q ss_pred chhhHHHHHHh
Q 006094 119 DYDTLLENIRG 129 (661)
Q Consensus 119 d~~tl~enL~~ 129 (661)
+..++.+++..
T Consensus 168 ~~~~v~e~l~~ 178 (302)
T 3b9q_A 168 AATVLSKAVKR 178 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888865
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.25 E-value=1.7e-07 Score=99.26 Aligned_cols=127 Identities=11% Similarity=0.047 Sum_probs=81.1
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc--------
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------- 103 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------- 103 (661)
++++.++...| +...++++++|.+.+++ +++|+|++|||||||+++|.+++ |..|.+.+.+...
T Consensus 29 ~ie~~~~~~~~----~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 29 LAESRRADHRA----AVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HHTCSSHHHHH----HHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCC
T ss_pred HHeeCCccccc----ChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccc
Confidence 34555555544 33457899999999999 99999999999999999999987 5555555544321
Q ss_pred ---cccccccccCCCCCCchh---------hHHHHHHhhhccccccccccccccccccccceeeccCccEEEEEehhhhh
Q 006094 104 ---SSRIIDGNFDDPRLTDYD---------TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (661)
Q Consensus 104 ---~~~~i~~~fq~p~~~d~~---------tl~enL~~L~~g~~I~~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~ 171 (661)
....+++++|++..|... +.......+. .......+++++|-+-+..
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~---------------------~~~~~~~~~iliDT~Gi~~ 160 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETML---------------------LCEAAGFDVILVETVGVGQ 160 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHH---------------------HHHHTTCCEEEEEECSSSS
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHH---------------------HHhcCCCCEEEEECCCCCc
Confidence 123467788887776431 1111111100 0112345677888666554
Q ss_pred c--cccCCCCEEEEEEcC
Q 006094 172 E--KLRPLIDLRVSVTGG 187 (661)
Q Consensus 172 d--eLr~llDlkIfVdad 187 (661)
+ .+.+.+|+.++|..+
T Consensus 161 ~~~~v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 161 SETAVADLTDFFLVLMLP 178 (337)
T ss_dssp CHHHHHTTSSEEEEEECS
T ss_pred chhhHHhhCCEEEEEEcC
Confidence 3 456788998888643
No 122
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.25 E-value=2.1e-06 Score=82.69 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..+.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHH
Confidence 445689999999999999999999876 3446776654
No 123
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.25 E-value=4.7e-07 Score=108.02 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID 109 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~~~~i~ 109 (661)
..|+++.+++..|. .+...+++++||.+.+|+ ++||+||||||||||+++|++++ |+.|.|.+++. ..++
T Consensus 669 ~~mL~v~nLs~~Y~--g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----~~I~ 739 (986)
T 2iw3_A 669 KAIVKVTNMEFQYP--GTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----CRIA 739 (986)
T ss_dssp SEEEEEEEEEECCT--TCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----CCEE
T ss_pred CceEEEEeeEEEeC--CCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----cceE
Confidence 34788888766552 112468999999999999 99999999999999999999998 88999998752 1356
Q ss_pred cccCCC
Q 006094 110 GNFDDP 115 (661)
Q Consensus 110 ~~fq~p 115 (661)
|++|++
T Consensus 740 yv~Q~~ 745 (986)
T 2iw3_A 740 YIKQHA 745 (986)
T ss_dssp EECHHH
T ss_pred eeccch
Confidence 777654
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.24 E-value=5.5e-06 Score=80.53 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp 91 (661)
+++|+||||||||||+++|.++++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 899999999999999999999875
No 125
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.3e-07 Score=107.98 Aligned_cols=60 Identities=12% Similarity=0.266 Sum_probs=45.8
Q ss_pred eeeeecccce----eeeccCce-EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE
Q 006094 33 RYEIVPIEDT----LSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI 96 (661)
Q Consensus 33 ~iei~~l~~~----~s~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I 96 (661)
.+++.++++. +.+.++.. ..++.+. .+.+|+ ++||+||||||||||+++|++++ |+.|.|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred ceEEecCChhhcCCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 4677777644 34444422 3566666 578999 99999999999999999999998 777776
No 126
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.23 E-value=6.4e-07 Score=83.81 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=28.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~~ 41 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDMI 41 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 4499999999999999999999976 3446776654
No 127
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1e-07 Score=105.31 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=58.5
Q ss_pred CceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-E-EecCCccccccc
Q 006094 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRI 107 (661)
Q Consensus 31 ~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g-~-I~lD~~~~~~~~ 107 (661)
+.|+++.++.+.|. +++|.+++|+ +++|+||||||||||+++|++++ |..| . |.+|+. ..+.
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--~~~~ 180 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--PQQP 180 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--TTSC
T ss_pred cchhhhhhhhehhh----------cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--ccCC
Confidence 34667777766652 7999999999 99999999999999999999998 6778 6 888872 3455
Q ss_pred cccccCCCCCC
Q 006094 108 IDGNFDDPRLT 118 (661)
Q Consensus 108 i~~~fq~p~~~ 118 (661)
+++++|++.++
T Consensus 181 i~~vpq~~~l~ 191 (460)
T 2npi_A 181 IFTVPGCISAT 191 (460)
T ss_dssp SSSCSSCCEEE
T ss_pred eeeeccchhhc
Confidence 77888887543
No 128
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.21 E-value=3.8e-07 Score=97.42 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=54.3
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-----ccccccccc-CCCCC--CchhhH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-----~~~~i~~~f-q~p~~--~d~~tl 123 (661)
+++++|.+++|+ +++|+|||||||||++++|.+++ |..|.|.+++... ....+++.+ |.+.. ++..++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 389999999999 99999999999999999999998 6889999987532 223456677 65443 345567
Q ss_pred HHHHHhh
Q 006094 124 LENIRGL 130 (661)
Q Consensus 124 ~enL~~L 130 (661)
.+++...
T Consensus 242 ~~~i~~~ 248 (361)
T 2gza_A 242 ATLLRSC 248 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 129
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.14 E-value=2.4e-07 Score=106.27 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.8
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La 87 (661)
..+|++|||.+++|+ +++|+||||||||||+++|.
T Consensus 335 ~~~L~~vsl~I~~Ge---~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGT---FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCC---EEEEEeeCCCCHHHHHHHHH
Confidence 347999999999999 99999999999999998654
No 130
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.13 E-value=1.2e-06 Score=93.84 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=58.0
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------------ccccccccCCCC-CC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPR-LT 118 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------------~~~i~~~fq~p~-~~ 118 (661)
..++|.+.+|+ +|+|+|||||||||++++|++++ |..|.|.+++.... ...+++++|++. .+
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46788888888 99999999999999999999998 66677777664221 123678889888 88
Q ss_pred chhhHHHHHHh
Q 006094 119 DYDTLLENIRG 129 (661)
Q Consensus 119 d~~tl~enL~~ 129 (661)
+..++.+++..
T Consensus 225 p~~tv~e~l~~ 235 (359)
T 2og2_A 225 AATVLSKAVKR 235 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHHHH
Confidence 88888888865
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.12 E-value=1.3e-06 Score=97.27 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=58.6
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCccc-------------cccccccccCCCCCC
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------------SSRIIDGNFDDPRLT 118 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~-------------~~~~i~~~fq~p~~~ 118 (661)
.++++|.+.+|+ +|+|+|+|||||||++++|++++ +..|.|.+++... .+..+++++|++..+
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368899998888 99999999999999999999998 5566666643211 122467888988888
Q ss_pred chhhHHHHHHhh
Q 006094 119 DYDTLLENIRGL 130 (661)
Q Consensus 119 d~~tl~enL~~L 130 (661)
+..++.+++...
T Consensus 360 p~~tV~e~l~~a 371 (503)
T 2yhs_A 360 SASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888754
No 132
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.10 E-value=6.6e-07 Score=87.13 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHH
Confidence 58999999999999999998887 4557777654
No 133
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.09 E-value=1.2e-05 Score=79.28 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=59.0
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCCchhhHHHHHHhhhcccccccccc
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~d~~tl~enL~~L~~g~~I~~P~y 141 (661)
+|+ +|+|+||||||||||++.|.+.++..............+.-...-.+....+...+.+.+ ..+..+++..+
T Consensus 18 ~g~---~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i---~~~~fle~~~~ 91 (197)
T 3ney_A 18 GRK---TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI---SANEFLEFGSY 91 (197)
T ss_dssp SCC---EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred CCC---EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhh---hhhhhhhhhhh
Confidence 555 999999999999999999999875321111111111111000111112223444444433 23444443322
Q ss_pred c-cccccccccceeeccCccEEEEEehhhhhccccCC-C-CEEEEEEcCch
Q 006094 142 D-FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL-I-DLRVSVTGGVH 189 (661)
Q Consensus 142 d-~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~l-l-DlkIfVdad~d 189 (661)
. ...+.....-...+...+++|+|.-.-....++.. . -+.|||.+|.-
T Consensus 92 ~~n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~ 142 (197)
T 3ney_A 92 QGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQ 142 (197)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCB
T ss_pred hceecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCc
Confidence 1 11111111001123456778888755443444422 2 37899997754
No 134
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.09 E-value=3.3e-06 Score=80.17 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
++.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~ 43 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDL 43 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 34599999999999999999999876 3456766654
No 135
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.07 E-value=3.6e-07 Score=102.81 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=68.2
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE-----------ecCCcccc-------cc--c----cccccCC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS-------SR--I----IDGNFDD 114 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I-----------~lD~~~~~-------~~--~----i~~~fq~ 114 (661)
+++|+ ++||+||||||||||+++|++++ |+.|.+ .+++.... .. . ..+..+.
T Consensus 22 ~~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 34677 99999999999999999999998 888877 33432110 00 0 1112121
Q ss_pred CCCCchhhHHHHHHhhhcccc-------cc-ccccccccccccccceeeccCccEEEEEehhhhhccccCCCCE
Q 006094 115 PRLTDYDTLLENIRGLKEGKA-------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (661)
Q Consensus 115 p~~~d~~tl~enL~~L~~g~~-------I~-~P~yd~~~~~r~~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (661)
+..+. .++.+.+........ +. ....+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 99 ~~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~ 171 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171 (538)
T ss_dssp GTTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred hhhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 22221 133333322111000 00 1123444555666667777777777777778888888888886
No 136
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.06 E-value=5.9e-06 Score=78.06 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
+.+|+|+|++||||||+++.|+..+ +...++.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l-~~~~i~~d~ 37 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGD 37 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH-TCEEECHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHH
Confidence 3589999999999999999999876 344555554
No 137
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.05 E-value=1.4e-06 Score=92.85 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=53.6
Q ss_pred ceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 32 DRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 32 ~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
.+++..++.+.|.. ...+++++ |.+.+|+ ++||+||||||||||+++|++.. |+.|.+.+.|.
T Consensus 44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECC---SCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCC---CCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 46777788877732 34689999 9999999 99999999999999999999998 78888877664
No 138
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.05 E-value=2.1e-07 Score=86.69 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHH
Confidence 69999999999999999999976 3446666654
No 139
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.03 E-value=2e-06 Score=83.60 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHH
Confidence 58999999999999999998876 3456777654
No 140
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=3.9e-06 Score=87.87 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=51.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-------------ccccccccCCCCCCchhhHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-------------~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
+.+|+|+|||||||||++++|++++ |..|.+.+++.... ...++++||++..++..++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3499999999999999999999998 77777777765321 1236788999988888888888864
No 141
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.01 E-value=1.6e-06 Score=96.34 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=44.7
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~ 102 (661)
..++++++|.+++ + ++||+||||||||||+++|++++ |+.|.|.++|..
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 3468999999999 9 99999999999999999999998 888999998864
No 142
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.00 E-value=3.3e-05 Score=77.15 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=28.0
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
|.++++......+..+|.|.|++||||||+++.|++.++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777777555566999999999999999999999874
No 143
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.99 E-value=7.7e-07 Score=84.25 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=28.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|+|++||||||+++.|+..+ +...++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 3489999999999999999999886 3446666654
No 144
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.98 E-value=8.5e-07 Score=91.17 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc----ccccccccCCCCCCchhhHHHHH
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENI 127 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~----~~~i~~~fq~p~~~d~~tl~enL 127 (661)
+.+||+||||||||||++.|.+.. |..|.+.++|.... .+.+++++|++..+...++.+++
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~ 68 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTP 68 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEech
Confidence 579999999999999999999997 78899988886322 23467788877665555544443
No 145
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.97 E-value=9.8e-06 Score=79.49 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=36.9
Q ss_pred CEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhh---cccchhhc--cCCCC-CCceEEEECC
Q 006094 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET---VYPMYKAF--IEPDL-QTAHIKIINK 240 (661)
Q Consensus 179 DlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~---v~P~~~~f--IeP~k-~~ADIII~N~ 240 (661)
.++|||++|.++|..|+..+ .+.+.+++.+.+.+. ..+.|+.+ +.|.. ..+|++|+.+
T Consensus 118 ~~~V~L~A~~e~r~~R~~~~----~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~ 181 (201)
T 3fdi_A 118 MISAFILGDKDTKTKRVMER----EGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIG 181 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEES
T ss_pred eEEEEEECCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECC
Confidence 58999999999877666544 477776665555333 33334443 33433 4678998754
No 146
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.96 E-value=1.7e-06 Score=82.20 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=27.6
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La 87 (661)
++||.+++|+ +++|+||||||||||++++.
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHc
Confidence 5799999999 99999999999999999743
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.93 E-value=1.3e-06 Score=92.17 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=44.4
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcc
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~ 102 (661)
+++++++.+++|+ +++|+||||||||||+++|.+++ |+.|.|.+++..
T Consensus 160 ~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 6889999999999 99999999999999999999998 788999998763
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.92 E-value=7.5e-07 Score=83.10 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=28.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|+|+|++||||||+++.|+..+ +...++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHH
Confidence 479999999999999999999976 3456666654
No 149
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.92 E-value=9.4e-06 Score=76.79 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=28.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
++.+|.|+|++||||||+++.|+..+ +...++.|.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~ 39 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAF 39 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHH
Confidence 35699999999999999999999876 3345666654
No 150
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.92 E-value=1.3e-05 Score=76.70 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
+.+|.|.|++||||||+++.|+..++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999874
No 151
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.90 E-value=8.3e-06 Score=77.00 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEecC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD 99 (661)
+|+|+|++||||||+++.|+..+ .+...++.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 79999999999999999999976 244466655
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.89 E-value=1.2e-05 Score=75.91 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|.|+|++||||||+++.|+..+ +...++.|.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~ 45 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDL 45 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHH
Confidence 478999999999999999999876 4556777664
No 153
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.88 E-value=1.1e-06 Score=83.24 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=28.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|+|+|++||||||+++.|+..+ +...++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchH
Confidence 369999999999999999999976 3457777765
No 154
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.87 E-value=9.1e-06 Score=81.45 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=23.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+|+|.|++||||||+++.|++.+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3599999999999999999999976
No 155
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=97.87 E-value=3.8e-05 Score=73.01 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=71.1
Q ss_pred eeeecCCCCCCcccccce-EEEeecCCeEEEEEeeeecCCCceeeeeeEEEeehhhHHHHhhcCCeEEEEEEeeeeeeee
Q 006094 281 YDIYLLPPGEDPDACQSY-LRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYD 359 (661)
Q Consensus 281 ~DIYl~pP~~df~~tde~-LRvR~~dg~~~Ltykgp~~d~~fi~rp~~ef~V~v~~~~gL~~LGf~~~a~V~R~re~y~~ 359 (661)
.+.|+..+ .+.. +|+|..|..+.|||||+. .++|.+.+++|+...-.-|+++. .+..|.|+|.+|..
T Consensus 26 ~QgYl~~~------~~~~~vRvR~~g~~~~lT~Kg~~----g~~R~E~E~~I~~~~~~~ll~~~--~~~~I~K~Ry~~~~ 93 (153)
T 2fbl_A 26 RQGYLTTP------TDSIELRLRQQGTEYFMTLKSEG----GLSRQEYEIQIDVTQFEMLWPAT--EGRRVEKTRYSGKL 93 (153)
T ss_dssp EEEESSCT------TSSSEEEEEEETTEEEEEEEC----------CEEEEEECHHHHHHHGGGG--TTSEEEEEEEEEEC
T ss_pred EEEEecCC------CCceEEEEEEeCCEEEEEEEcCC----CceeEEEEEECCHHHHHHHHhhC--CCCEEEEEEEEEEc
Confidence 38899765 3466 999999999999999998 57799999999976666676543 37789999999999
Q ss_pred CC-EEEEeecccccC--cceEEEEeccHH
Q 006094 360 DR-VCVKTDWLEQLN--RKYVQVQGRDRL 385 (661)
Q Consensus 360 g~-~~i~lD~ve~Lg--~~FveI~g~~~~ 385 (661)
++ .++.+|.++|-. =.++||+-.+.+
T Consensus 94 ~~~~~~evD~f~g~~~gL~~aEvE~~~e~ 122 (153)
T 2fbl_A 94 PDGQLFELDVFAGHLSPLMLVEVEFLSED 122 (153)
T ss_dssp TTCCEEEEEEECGGGTTCEEEEEEESSHH
T ss_pred CCcEEEEEEEECCcCCCeEEEEEEecCcc
Confidence 99 999999999843 358888876664
No 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.85 E-value=7.6e-06 Score=77.61 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=32.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+++|+ +|+|+|+|||||||+++.|++. ++.|.+.+++.
T Consensus 6 i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSD 43 (191)
T ss_dssp CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTT
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEccc
Confidence 45666 9999999999999999999998 56777777764
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.85 E-value=2.6e-06 Score=87.13 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=39.7
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEecCCc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-~g~I~lD~~ 101 (661)
.+|++++ +++|+ +++|+|||||||||++++|.+++ |. .|.|.+++.
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3688888 78888 99999999999999999999998 55 788877664
No 158
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.85 E-value=4.8e-05 Score=73.10 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|+|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999875
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.85 E-value=5.4e-06 Score=78.09 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|.|.|++||||||+++.|+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 160
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.83 E-value=9.5e-07 Score=87.52 Aligned_cols=61 Identities=16% Similarity=0.046 Sum_probs=41.3
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc----cccccccccccCCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY----NDSSRIIDGNFDDP 115 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~----~~~~~~i~~~fq~p 115 (661)
+...+|+++ ++|+ +++|+||||||||||+++|+++-|+.|.|..... ....+.++++||++
T Consensus 11 g~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred hHHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 344567775 7899 9999999999999999999998334454432111 11234578888876
No 161
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.82 E-value=7.7e-06 Score=82.11 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=30.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.++.+|+|+||+||||||+++.|+..+ +...++.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHH
Confidence 456799999999999999999999876 4556776654
No 162
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.82 E-value=6.3e-06 Score=93.90 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-C-CceEEecCCccc----------cccccccccCCCCCCchhhHHHHHHhh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGL 130 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll-p-~~g~I~lD~~~~----------~~~~i~~~fq~p~~~d~~tl~enL~~L 130 (661)
.|||+|+||||||||+++|++++ | +.|.|..++... ....++++||++.+++..++.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 49999999999999999999998 7 799999988631 123578999999999999999988653
No 163
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.82 E-value=2.7e-06 Score=92.81 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=44.7
Q ss_pred EEEeeccceeccCC-----------------cceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 51 IVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge-----------------~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
.++++|+|.+++|+ ...++||+|+||||||||+++|.++. |+.|.|..++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe
Confidence 47899999999998 66799999999999999999999988 67777777765
No 164
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.82 E-value=2.2e-05 Score=80.20 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=29.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|+|++||||||+++.|+..+++...|+.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH
Confidence 358999999999999999999986545567777744
No 165
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.81 E-value=3.4e-05 Score=73.20 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+|+|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999986
No 166
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.81 E-value=2.2e-06 Score=95.61 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred ceEEEeeccc-eeccCCcceEEEEECCCCCcHHHHHHH--HHHhC-CCceEEecCCcccc------ccccccccCC
Q 006094 49 FFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (661)
Q Consensus 49 ~~~vL~~Isl-~i~~ge~~~IIGI~GpSGSGKSTLak~--La~ll-p~~g~I~lD~~~~~------~~~i~~~fq~ 114 (661)
...+|++|++ .+++|+ +++|+||||||||||++. +.+++ |+.|.+.+++.... .+.++++||+
T Consensus 24 g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp CCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred CchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 3567999999 999999 999999999999999999 67887 57889988876421 1235666664
No 167
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=1.4e-06 Score=95.54 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=33.6
Q ss_pred CceEEEeeccceeccCCcceE--EEEECCCCCcHHHHHHHHHHhC
Q 006094 48 GFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~I--IGI~GpSGSGKSTLak~La~ll 90 (661)
+... +++++|.+.+|+ + +||+|+||||||||++.|.+..
T Consensus 26 ~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4445 999999999999 8 9999999999999999999974
No 168
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.79 E-value=5.1e-05 Score=76.75 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++.+|.|+|++||||||+++.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999874
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.77 E-value=7.6e-06 Score=79.36 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=39.2
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-------CceEEecCCccc-cccccccccCCCCCC
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYND-SSRIIDGNFDDPRLT 118 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-------~~g~I~lD~~~~-~~~~i~~~fq~p~~~ 118 (661)
-+++|+ +++|+||||||||||++.|++.+ + ..+.+.+++... ....+.+.++....+
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 86 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 86 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSC
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 477888 99999999999999999999965 3 334666666432 122344445544443
No 170
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.75 E-value=1.3e-05 Score=84.86 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCcccc-----------ccc--cccccCCCCCCchhhHHHHHHhh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI--IDGNFDDPRLTDYDTLLENIRGL 130 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~~~~-----------~~~--i~~~fq~p~~~d~~tl~enL~~L 130 (661)
++.+|+|+|||||||||++++|++.+ |..|.+.+.+.... .+. +.+.+|.+..++..++.+++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34599999999999999999999998 66666666654221 112 23677888888888888888653
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.73 E-value=2.3e-06 Score=82.77 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceE--EecCCc
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAV--ITMDNY 101 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~--I~lD~~ 101 (661)
+...+.+.+++..++|+ +|+|+|+|||||||+++.|++.++..|. +.+|+.
T Consensus 10 ~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 44455667777777777 9999999999999999999998732232 255543
No 172
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.73 E-value=6.5e-06 Score=77.54 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|.|+|++||||||+++.|+..+ +...++.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccHH
Confidence 369999999999999999999987 3445666554
No 173
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.71 E-value=1.7e-05 Score=73.99 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHH-hCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLN-FMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~-llp~~g~I~lD~~ 101 (661)
|.+|.|+|++||||||+++.|+. .+ +...++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecHHHH
Confidence 45899999999999999999998 44 4556666554
No 174
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.67 E-value=3.2e-05 Score=72.72 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=26.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC----ceEEecCC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPS----IAVITMDN 100 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~----~g~I~lD~ 100 (661)
.+|.|+|++||||||+++.|+..++. ...++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 48999999999999999999997632 34555544
No 175
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.61 E-value=1.4e-05 Score=87.28 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=34.5
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~ 100 (661)
+|+++ + ..+++ +|+|+|||||||||+++.|.+.+ +..|.|...+
T Consensus 158 ~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 158 NFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp HHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred HHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 45555 3 35667 99999999999999999999987 5566665554
No 176
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.59 E-value=0.0002 Score=72.37 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|.|+||+||||||+++.|++.+ +...++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHH
Confidence 489999999999999999999887 3557888885
No 177
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.58 E-value=1.2e-05 Score=89.91 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=42.7
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
.+++.+++.+++|+ +++|+||+||||||++++|.+++ |+.|.+.+++.
T Consensus 248 ~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 35778899999998 89999999999999999999998 67888888775
No 178
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=1e-05 Score=80.44 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=25.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSI 93 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~ 93 (661)
+.+|+|.|+.||||||+++.|+..+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5689999999999999999999998543
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.57 E-value=3.2e-05 Score=80.24 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=36.6
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEec---CCccccc-------cccccccCCCCCC
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~l---D~~~~~~-------~~i~~~fq~p~~~ 118 (661)
.+..++ +++|+||||||||||+++|.++. |..|.|.. +|.+... +..+++||.|...
T Consensus 165 ~~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 165 EYLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HHhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 344567 99999999999999999999998 88899988 6653211 2367888888653
No 180
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.52 E-value=6.9e-05 Score=73.17 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 38 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDM 38 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHH
Confidence 4589999999999999999999987 3456777654
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.51 E-value=5.2e-05 Score=72.04 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
+++|+|||||||||+++.|++.. .|.+.+++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~--~g~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL--DNSAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS--SSEEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhccc--CCeEEEcc
Confidence 89999999999999999999854 34455554
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.49 E-value=1.2e-05 Score=80.28 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=40.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHH---HhC-CCceEEecCCcccc---ccccccccCCCCCCchhhHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRG 129 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La---~ll-p~~g~I~lD~~~~~---~~~i~~~fq~p~~~d~~tl~enL~~ 129 (661)
+.+|+|+|+|||||||+++.|+ +.. ++.|.+..++.... ...+...+++...++..++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3499999999999999999999 443 34444444432111 1112334556666676777777654
No 183
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.48 E-value=3.5e-05 Score=80.15 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=35.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEEec---CCccccc-------cccccccCCCCCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll-p~~g~I~l---D~~~~~~-------~~i~~~fq~p~~~ 118 (661)
+++|+|+||||||||+++|. .+ |..|.|.. +|.+... ...++++|.|...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 99999999999999999999 77 78899988 6653211 1367888888653
No 184
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.45 E-value=0.00012 Score=71.77 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+..|.|.|++||||||+++.|+..+ +...++.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHH
Confidence 4589999999999999999999987 4557777654
No 185
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.45 E-value=5.9e-05 Score=74.00 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=30.7
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHH--HhC-CCceEEecCC
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFM-PSIAVITMDN 100 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La--~ll-p~~g~I~lD~ 100 (661)
-+++|+ +++|+||||||||||+++|+ +.+ ++.+.+.+++
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 578999 99999999999999999999 552 3444444443
No 186
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.45 E-value=7.3e-05 Score=74.68 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=31.9
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
++..+..++..++.+|.|.||+||||+|.++.|+..+ +...|+..+
T Consensus 17 ~~~~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGd 62 (217)
T 3umf_A 17 RGSHMTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGD 62 (217)
T ss_dssp -------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHH
T ss_pred CCccccchhccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHH
Confidence 4555556666777899999999999999999999987 444565544
No 187
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.39 E-value=0.00015 Score=70.66 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|+|+|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 58999999999999999999876 3456777654
No 188
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.39 E-value=1.1e-05 Score=96.00 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
..|++|+|.++.|+ +++|+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Ge---iv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGV---FVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSS---EEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCc---EEEEEccCCCChhhhH
Confidence 35899999999999 9999999999999997
No 189
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.38 E-value=3.2e-05 Score=79.09 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=36.5
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g 94 (661)
.+|+++++.+.+|+ +++|+|+||||||||++.|++.+ +..|
T Consensus 23 ~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 45899999999999 99999999999999999999987 4434
No 190
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.38 E-value=4.2e-05 Score=73.55 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEecCCcc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll-p~---~g~I~lD~~~ 102 (661)
.+++|+|+||||||||++.|.+++ |. .|.|.+|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 489999999999999999999998 55 8999988763
No 191
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=4e-05 Score=80.50 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=34.9
Q ss_pred ceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEec---CCccccc-----c-ccccccCCCCCCc
Q 006094 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-----R-IIDGNFDDPRLTD 119 (661)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~l---D~~~~~~-----~-~i~~~fq~p~~~d 119 (661)
+.+.+|+ +++|+|+||||||||++.|.+.. +..|.|.. +|.+... + ..++++|.|....
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSS
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccc
Confidence 5666788 99999999999999999999987 67888887 5543211 1 1567888887654
No 192
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.34 E-value=3.6e-05 Score=75.06 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=29.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCcc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~ 102 (661)
+++|+|+|||||||++++|++.+++.| +.++++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~ 36 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEe
Confidence 799999999999999999999875456 7777763
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=0.00011 Score=68.55 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=26.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
.+|+|+|++||||||+++.|++.++ ...++.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~ 37 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQ 37 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccH
Confidence 3899999999999999999999873 33444443
No 194
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.29 E-value=8.2e-05 Score=79.75 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=30.7
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEecC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMD 99 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~-~g~I~lD 99 (661)
+.+|+ +|+|+|||||||||+++.|.+++ |. .|.|...
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 56677 99999999999999999999998 43 5766443
No 195
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.21 E-value=0.00012 Score=77.63 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=33.6
Q ss_pred Eeeccceecc--CCcceEEEEECCCCCcHHHHHHHHHHhC-CCc
Q 006094 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (661)
Q Consensus 53 L~~Isl~i~~--ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~ 93 (661)
...|++.+.+ ++ .++|+|+||||||||+++|++++ |..
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3568888988 88 99999999999999999999998 544
No 196
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.17 E-value=0.00015 Score=69.67 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
.++|+||||||||||+++|++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.17 E-value=0.00017 Score=71.03 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=27.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHH
Confidence 68999999999999999999876 3456776654
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.13 E-value=0.00046 Score=72.58 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=30.5
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+++|...+++ +|+|+|++|+||||++..|++.+
T Consensus 96 ~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 67888777666 99999999999999999999987
No 199
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.10 E-value=0.00024 Score=76.16 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=44.9
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEecC-Ccc---ccccccccccCCCCCCchhhHHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYN---DSSRIIDGNFDDPRLTDYDTLLE 125 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll--p~~g~I~lD-~~~---~~~~~i~~~fq~p~~~d~~tl~e 125 (661)
++++++.+ +|+ +++|+|+||||||||++.|.+.. +..|.|..+ |.. .....+++++|++.++|...+.+
T Consensus 206 l~~L~~~~-~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEAL-TGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHHH-TTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHhc-CCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 34555543 567 99999999999999999999986 567888776 431 12234567778777777766655
No 200
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.0012 Score=71.58 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=27.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
.+.+|.|+|++||||||+++.|+..+ +...|+.|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRDT 291 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-TCEECCGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEccch
Confidence 45699999999999999999999876 334444443
No 201
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.09 E-value=3.2e-05 Score=77.79 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
+++|+|||||||||++++|++.+ |+.|.|.+++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 89999999999999999999998 77777777765
No 202
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.08 E-value=7.8e-05 Score=71.22 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=31.4
Q ss_pred eeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 33 ~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++++.++...|+ ..++++ |.+.++. .|+|+|++|||||||++.|.+..
T Consensus 3 ~l~~~~~~~~~~-----~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-----APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-----ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-----cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 466777777663 235666 7777776 99999999999999999998753
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00055 Score=67.64 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+..|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHH
Confidence 34589999999999999999999887 3456776653
No 204
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.0002 Score=73.38 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=37.5
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+++++++.+.+| ++|.||+|||||||+++|++.+ +.+.+.+++.
T Consensus 34 ~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~ 78 (274)
T 2x8a_A 34 DQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANES-GLNFISVKGP 78 (274)
T ss_dssp HHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHT-TCEEEEEETT
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcH
Confidence 4578888888765 9999999999999999999998 3467777764
No 205
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00015 Score=77.36 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.6
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.++++++|.+.+| +++|+|+||||||||+++|..++
T Consensus 48 f~~l~~v~l~~~~G----~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 48 LATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ETTEEEEEEECCSS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC----cEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999765 69999999999999999998776
No 206
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.06 E-value=0.00025 Score=71.18 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=24.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.++.+|.|.|++||||||+++.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999999876
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.03 E-value=0.00019 Score=76.65 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=26.0
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+++ +|+|+|||||||||++++|.+.+
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcc
Confidence 455666 99999999999999999999988
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.01 E-value=0.00017 Score=78.65 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCCceeeeecccceeeeccCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 29 KDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 29 ~~~~~iei~~l~~~~s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++..++++.++++.| +...++++++|.+ +|+|+||||||||++.|.+..
T Consensus 7 ~~~~~l~~~~l~~~y----~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 7 NLEGYVGFANLPNQV----YRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp --------CCCCCCT----TTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCC
T ss_pred cCcCcEEEEecceeE----CCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCC
Confidence 334577788887776 3456789998875 999999999999999999985
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.99 E-value=0.00036 Score=65.75 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.9
Q ss_pred cceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++.+.+|+ .++|.||+|+|||||+++|++.+
T Consensus 32 ~~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGK---GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCC---EEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 34566677 99999999999999999999986
No 210
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.99 E-value=0.0004 Score=64.87 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC-ceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~-~g~I~lD~~ 101 (661)
.+|.|+|++||||||+++.|+..++. ...++.|.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 48999999999999999999998842 223456654
No 211
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.96 E-value=0.00045 Score=83.21 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred Cceeeeec-----ccceeeeccCceEEEeeccceecc-------CCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 31 SDRYEIVP-----IEDTLSFEKGFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 31 ~~~iei~~-----l~~~~s~~~g~~~vL~~Isl~i~~-------ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..++++.+ +...|. +...++++++|.+.+ |+ +++|+|||||||||+++.+ +++
T Consensus 748 ~~~l~i~~~rHP~l~~~~~---~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF---GDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCEEEEEECCCC---------CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHH
T ss_pred CceEEEEeccccEEEEEec---CCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHH
Confidence 34677777 555442 334689999999876 67 9999999999999999999 775
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00045 Score=65.06 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=28.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll-p-~~g~I~lD~~ 101 (661)
..+|+|+|++||||||+++.|++.+ + +...+.+|+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3489999999999999999999986 2 3336666654
No 213
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.00039 Score=66.96 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=31.8
Q ss_pred EEEeeccc-eeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 51 IVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 51 ~vL~~Isl-~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..|+.+.. -+.+|+ +++|+||+|||||||++.|++.+
T Consensus 10 ~~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34677766 688899 99999999999999999999775
No 214
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.93 E-value=0.00025 Score=73.63 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh-C-CCceEEecCC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDN 100 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l-l-p~~g~I~lD~ 100 (661)
+...++++++|.+ +|+|+||+|||||++.|.+. + |..| +..++
T Consensus 9 ~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g 53 (301)
T 2qnr_A 9 HRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAA 53 (301)
T ss_dssp ---------CEEE---------EEEEETTSSHHHHHHHHHC--------------
T ss_pred CCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCC
Confidence 5567889988765 99999999999999999875 4 6555 54444
No 215
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.91 E-value=0.00061 Score=68.79 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=28.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
..+||.|+.||||||+++.|+..+ +...|+.++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gdl 42 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF-GIPQISTGDM 42 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-TCCEECHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh-CCCeeechHH
Confidence 468999999999999999999976 4556776653
No 216
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.89 E-value=0.001 Score=74.98 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.+|.|+|++||||||+++.|+..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 217
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.88 E-value=0.00034 Score=83.32 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.5
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...++++++|.+++|+ +++|+|||||||||+++.++..
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHH
Confidence 3467899999999999 9999999999999999999765
No 218
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.87 E-value=0.00029 Score=75.94 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=35.2
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+++++++.+++++ +++|.||+||||||+++.|++.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999 99999999999999999999986
No 219
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.87 E-value=0.00032 Score=69.79 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=36.6
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+++++++.+++| ++|.||+||||||++++|++.+. .+.+.+++.
T Consensus 39 ~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~ 83 (254)
T 1ixz_A 39 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGS 83 (254)
T ss_dssp HHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHH
Confidence 4577888888765 89999999999999999999873 566666653
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.86 E-value=0.0008 Score=65.64 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHh--CC------CceEEecCCc
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--MP------SIAVITMDNY 101 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~l--lp------~~g~I~lD~~ 101 (661)
-+++|+ +++|+||+|||||||++.|+.. ++ +.+.+.+++.
T Consensus 20 gi~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 20 GIETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 367888 9999999999999999999994 32 4567766654
No 221
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.86 E-value=0.0005 Score=80.83 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=33.8
Q ss_pred ceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...++++++|. ++|+ +++|+|||||||||+++.|++..
T Consensus 594 ~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHH
Confidence 34579999999 7888 99999999999999999999863
No 222
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.84 E-value=0.00027 Score=75.02 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=44.9
Q ss_pred Eeec-cceeccCCcceEEEEECCCCCcHHHHHHHHHHhC--C-Cc----eE-EecCCcccc-ccccccccCCCCCC
Q 006094 53 IRAC-QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPRLT 118 (661)
Q Consensus 53 L~~I-sl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll--p-~~----g~-I~lD~~~~~-~~~i~~~fq~p~~~ 118 (661)
|+.+ .+-+++|+ +++|+||+|||||||++.|++.. + .. |. +.+|+.... +..+.++++.+..+
T Consensus 120 LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 120 LDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4444 67888999 99999999999999999999986 2 22 44 777775432 23455566655543
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00042 Score=70.21 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+++++++.+++| ++|.||+||||||++++|++.+. .+.+.+++.
T Consensus 63 ~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~ 107 (278)
T 1iy2_A 63 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGS 107 (278)
T ss_dssp HHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHcC-CCEEEecHH
Confidence 4577888887765 89999999999999999999983 566766653
No 224
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.76 E-value=0.00074 Score=63.50 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=27.7
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++++.+.++ +.+|+|+|||||||++++|...+
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666543 79999999999999999999987
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.76 E-value=0.00084 Score=63.93 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD 99 (661)
+.+|+|+|++||||||+++.|+..+++...+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3589999999999999999999987323344443
No 226
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.00036 Score=72.92 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=29.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC---------CCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll---------p~~g~I~lD~~ 101 (661)
..+++|+|++||||||+++.|.+.. ++.|.|.+|+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~ 48 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHH
Confidence 4599999999999999999999874 35566666664
No 227
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.71 E-value=0.00037 Score=82.25 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=32.1
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHH-HHHh
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEK-VLNF 89 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~-La~l 89 (661)
+|++|+|.+++|+ ++||+|+||||||||++. |.+.
T Consensus 512 ~L~~vsl~i~~Ge---iv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGV---MTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSS---EEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCC---EEEEEcCCCcCHHHHHHHHHHHH
Confidence 5999999999999 999999999999999996 6544
No 228
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.68 E-value=0.00075 Score=80.51 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=33.4
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..++++++|.+.+|+ +++|+|||||||||+++.++..
T Consensus 649 ~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 649 AFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999 9999999999999999999543
No 229
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.67 E-value=0.00079 Score=78.76 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..++++++|. |+ +++|+|||||||||+++.|+++.
T Consensus 566 ~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhh
Confidence 5678999998 78 99999999999999999999874
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00044 Score=64.52 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++ .++|.||+|||||||++++++.+
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 666 89999999999999999999987
No 231
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.64 E-value=0.00023 Score=74.58 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=35.1
Q ss_pred CceEEEeeccceeccC----CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 48 GFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 48 g~~~vL~~Isl~i~~g----e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
|...+++++++.++.+ +.+..++|.||+|+||||++++|++.+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4445788899988765 333479999999999999999999986
No 232
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.62 E-value=0.0014 Score=62.19 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..+.|+|+|++|||||||++.+.+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 335689999999999999999999875
No 233
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.60 E-value=0.0013 Score=65.21 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDN 100 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~ 100 (661)
++.+|+|+|-.||||+|+++.+...++ .+-++.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 457999999999999999999998542 244566555
No 234
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.59 E-value=0.00098 Score=65.36 Aligned_cols=35 Identities=11% Similarity=0.386 Sum_probs=29.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|+|++||||||+++.|+..+ +...++.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 41 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDL 41 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHH
Confidence 4589999999999999999999887 4556777654
No 235
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.57 E-value=0.00061 Score=66.18 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=28.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC-Cce--EEecCC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMP-SIA--VITMDN 100 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp-~~g--~I~lD~ 100 (661)
.+|.|+|++||||||+++.|++.++ ..| .+.+|+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4999999999999999999999873 444 666654
No 236
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.57 E-value=0.0025 Score=71.27 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC--C--CceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM--P--SIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll--p--~~g~I~lD~~ 101 (661)
.+.+|.++|.+||||||+++.|+..+ . +...++.|.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 35689999999999999999999875 2 3445677765
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.56 E-value=0.0012 Score=67.92 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=30.2
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC-CceEEecCCc
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 101 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~llp-~~g~I~lD~~ 101 (661)
...+.+|.|+|||||||||+++.|+..++ ....|+.|.+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34567999999999999999999998874 3445555544
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.0014 Score=65.80 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=30.0
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCC-CceEEecCCc
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 101 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~llp-~~g~I~lD~~ 101 (661)
....+.+|.|+|++||||||+++.|+..++ ....+..|.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345567999999999999999999999884 2334444443
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.53 E-value=0.00097 Score=63.89 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|+|++||||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999875
No 240
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.51 E-value=0.012 Score=62.02 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=31.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+.+|.|+||+|||||||+..|+..++ ...|+.|+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 356899999999999999999999984 568898885
No 241
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.48 E-value=0.001 Score=75.03 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=31.3
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EE-ecCCc
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNY 101 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g-~I-~lD~~ 101 (661)
.+.+|+ +|+|+|+|||||||++++|++.+ +..| .+ .+|+.
T Consensus 365 ~~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 345566 99999999999999999999998 5554 34 36664
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.48 E-value=0.001 Score=62.22 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
+.+|.|+|++||||||+++.|+..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998873
No 243
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.47 E-value=0.00082 Score=80.34 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=30.5
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHH
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV 86 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L 86 (661)
+|++|+|.++.|+ ++||+|+||||||||++.|
T Consensus 657 ~Lk~Vsl~I~~Ge---ivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGV---LTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSS---EEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCC---EEEEEcCCCCCHHHHHHHH
Confidence 4899999999999 9999999999999999985
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.38 E-value=0.002 Score=61.79 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=32.2
Q ss_pred Eeeccc-eeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 53 IRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 53 L~~Isl-~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
|+.+-. -+++|+ +++|+|++|||||||++.|+. .++.+++.++.
T Consensus 9 LD~~l~Ggi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred HHHhhcCCCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 444433 477888 999999999999999999998 32344554443
No 245
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.38 E-value=0.00076 Score=80.39 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=31.0
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La 87 (661)
+|++|+|.++.|+ ++||+|+||||||||++.|.
T Consensus 639 ~Lk~Vsl~I~~Ge---iv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGT---FVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSS---EEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCC---EEEEEcCCCCCHHHHHHHHH
Confidence 5899999999999 99999999999999999853
No 246
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.33 E-value=0.0013 Score=71.64 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=32.3
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.++++|.++.+. .|+|+|++|||||||++.|++..
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcCC
Confidence 478999999998 99999999999999999999874
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.32 E-value=0.0031 Score=66.60 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=30.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|+||+|||||||+..|+..++ ...|+.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 45899999999999999999999884 568888885
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.0013 Score=68.88 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|+|++||||||++..|++.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3499999999999999999999987
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.0034 Score=66.34 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.+|.|+||+||||||+++.|+..+ +...|+.|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccch
Confidence 489999999999999999999998 4668888886
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.24 E-value=0.0009 Score=64.21 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0023 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|.|+|++||||||+++.|+..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999987
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0032 Score=60.52 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=27.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC----CceEEecCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDN 100 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp----~~g~I~lD~ 100 (661)
+.+++|+|+||||||||++.|.+.+. ..+.+..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 45899999999999999999998751 355665543
No 253
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.23 E-value=0.0032 Score=60.57 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEecCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll-p---~~g~I~lD~ 100 (661)
+.+++|+|++||||||++..|...+ . .++.+..|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 5689999999999999999999876 1 345565543
No 254
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.13 E-value=0.0016 Score=63.43 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=27.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|.|.|++||||||+++.|+..++ ...++.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~ 39 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDL 39 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence 45899999999999999999998873 334554443
No 255
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.11 E-value=0.0042 Score=66.07 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
++.+|.|+||+|||||||+..|+..++ ...|+.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 345899999999999999999999984 568898886
No 256
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.99 E-value=0.006 Score=59.94 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|.|-|+.||||||.++.|+..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 489999999999999999999987
No 257
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.98 E-value=0.0071 Score=69.29 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=29.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC--CceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp--~~g~I~lD~~ 101 (661)
++.+|.|+|.+||||||+++.|+..+. +...+.+|+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 567999999999999999999999862 3446666654
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.97 E-value=0.0024 Score=66.18 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.2
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++++|. +++ +|+|+|++|+||||++..|++.+
T Consensus 91 ~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 567776 555 99999999999999999999987
No 259
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.93 E-value=0.0024 Score=71.64 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=38.6
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEecCCc
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p~~g~I~lD~~ 101 (661)
..+++++++.+ +++ +++|.||+|+||||+++.|++.+ +..+.+.+.+.
T Consensus 96 ~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34567777777 566 89999999999999999999997 56677777764
No 260
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.93 E-value=0.0039 Score=63.19 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+ +++|+|++|||||||+..+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 67888 99999999999999999999865
No 261
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.89 E-value=0.0027 Score=66.81 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.8
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+...+++++++...++. +|+|+|++|+||||+++.|++.+
T Consensus 41 ~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34456788888877766 99999999999999999999876
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.0052 Score=59.80 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=25.7
Q ss_pred cceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.--+++|+ +++|+|++|||||||+..++...
T Consensus 17 ~gGl~~G~---~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 17 HGGIPERN---VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTSEETTC---EEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCc---EEEEECCCCCCHHHHHHHHHHHH
Confidence 44578888 99999999999999987776543
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0016 Score=67.43 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.3
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHH-hC-CCceEEecCCc
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNY 101 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~-ll-p~~g~I~lD~~ 101 (661)
..+..+. +.|.||+|+||||+++.|++ ++ ++.|.+.+++.
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 4444445 99999999999999999999 45 56676666653
No 264
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.80 E-value=0.0022 Score=72.71 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=41.0
Q ss_pred cCceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-C-ceEEecC
Q 006094 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S-IAVITMD 99 (661)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp-~-~g~I~lD 99 (661)
.|...+++.+++.+..++ .++|.||+|+||||+++.|++.++ . .+.+.++
T Consensus 44 ~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp CSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred ECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 355567899999999998 999999999999999999999983 2 2455443
No 265
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.79 E-value=0.0053 Score=58.29 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.|+|+|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999999873
No 266
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.74 E-value=0.0058 Score=66.52 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=30.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
+.+|+|+||+|||||||+..|+..++ ...|+.|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCcc
Confidence 45899999999999999999999884 457888883
No 267
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.74 E-value=0.004 Score=66.32 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=27.6
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++++++.+.+| +.+|+|||||||||++.+|...+
T Consensus 14 ~~~~~i~~~~g----~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 14 LKNVDIEFQSG----ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCC----eEEEECCCCCCHHHHHHHHHHHh
Confidence 55667777643 67799999999999999999775
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.0056 Score=63.51 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|+|+|++||||||++..|++.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999987
No 269
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.66 E-value=0.0079 Score=65.12 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=30.1
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh------------C-CCceEEecCC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF------------M-PSIAVITMDN 100 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~l------------l-p~~g~I~lD~ 100 (661)
+..+. .+||+|++|+|||||+++|.+. . |..|.+.+.+
T Consensus 17 v~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 34455 9999999999999999999992 2 4567776665
No 270
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.65 E-value=0.0081 Score=64.24 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEecCCc
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNY 101 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll-p-~~g~I~lD~~ 101 (661)
+++|. ++.|.||+|||||||+..++..+ + +..++.++..
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666 99999999999999999999875 2 2224445443
No 271
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.59 E-value=0.0045 Score=66.19 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.7
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.++++++.+.+| +++|+|||||||||++++|..+.
T Consensus 16 ~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHHhc
Confidence 357788888653 89999999999999999999764
No 272
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.53 E-value=0.0068 Score=71.58 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=27.4
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
|+||++.++.+. +++|+|.||||||||+
T Consensus 26 Lkni~v~iP~~~---l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 26 LKDISVKVPRDA---LVVFTGVSGSGKSSLA 53 (842)
T ss_dssp CCSEEEEEESSS---EEEEESSTTSSHHHHH
T ss_pred CCCeeEEecCCC---EEEEECCCCCCHHHHH
Confidence 899999999999 9999999999999998
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.0021 Score=67.02 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=35.1
Q ss_pred CceEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
|...+++.++..+..|+-+. +.+.||+|+||||+++++++.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44456788888898887333 8999999999999999999986
No 274
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.43 E-value=0.0088 Score=64.66 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=25.4
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..++ +++|+|||||||||++++|..++
T Consensus 23 ~~~~~---~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESN---FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCS---EEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCC---EEEEECCCCCCHHHHHHHHHhhh
Confidence 45567 99999999999999999999987
No 275
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.39 E-value=0.0067 Score=57.39 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+++++++..+.. .|+|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~----ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG----KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C----EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc----EEEEECCCCCCHHHHHHHHhcC
Confidence 3577888776654 4999999999999999999874
No 276
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.37 E-value=0.007 Score=60.76 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEE
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI 96 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp~~g~I 96 (661)
.++.+|.|.|+.||||||+++.|+..+.+...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 456799999999999999999999988544344
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.36 E-value=0.0067 Score=65.95 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=51.6
Q ss_pred CCCCcccccccchhhhcccCC--CceeeeecccceeeeccCceEEEe--------------eccceeccCCcceEEEEEC
Q 006094 10 DSPRRRPGLLRDQVQLVKKKD--SDRYEIVPIEDTLSFEKGFFIVIR--------------ACQLLAQKNHGIILVGVAG 73 (661)
Q Consensus 10 ~s~~r~~~ll~~~~~l~~~~~--~~~iei~~l~~~~s~~~g~~~vL~--------------~Isl~i~~ge~~~IIGI~G 73 (661)
...+|.+.|++.......... ...++..++.-.|.. ...+++ ++.+.+.+|+ .++|.|
T Consensus 108 ~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQ---r~~IvG 181 (422)
T 3ice_A 108 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQ---RGLIVA 181 (422)
T ss_dssp CSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTC---EEEEEC
T ss_pred CccchHHHHhccCcccCCChhhhcCCceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCc---EEEEec
Confidence 456788999887653211110 123444454444432 244677 7889999999 999999
Q ss_pred CCCCcHHHHHHHHHHhC
Q 006094 74 PSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 74 pSGSGKSTLak~La~ll 90 (661)
|+|+|||||++.|+..+
T Consensus 182 ~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHH
Confidence 99999999999998864
No 278
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.32 E-value=0.012 Score=62.26 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=23.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+|+|+|++|||||||++.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999875
No 279
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.29 E-value=0.0091 Score=54.91 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999875
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.27 E-value=0.012 Score=63.89 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHH--HhCC------CceEEecCCc
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFMP------SIAVITMDNY 101 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La--~llp------~~g~I~lD~~ 101 (661)
-+++|+ ++.|+||+|||||||++.|+ ..+| +.+.+.+++.
T Consensus 174 GI~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 367788 99999999999999999765 3333 2346766654
No 281
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.24 E-value=0.0087 Score=71.66 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=27.2
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 36 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 36 LRSVDLDLPRDA---LIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CCSEEEEEESSS---EEEEEESTTSSHHHHH
T ss_pred cCceeeeccCCC---EEEEECCCCCcHHHHH
Confidence 899999999999 9999999999999996
No 282
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.23 E-value=0.0095 Score=66.26 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=28.6
Q ss_pred cceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..+.+|+ +++|+|+||||||||++.+++..
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 55788999 99999999999999999999986
No 283
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.12 E-value=0.012 Score=54.67 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
++.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 284
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.07 E-value=0.0085 Score=66.81 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=33.6
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
+++++++.+++| |.|.||+|+|||||+++|++.. ..+.+.+++
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g 97 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASG 97 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEG
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEeh
Confidence 456677766654 8999999999999999999987 355666654
No 285
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.05 E-value=0.017 Score=59.41 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
.|.|.||+|+||||+++.|+..+ ....+.+++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 79999999999999999999987 345565554
No 286
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.03 E-value=0.015 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998654
No 287
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.99 E-value=0.011 Score=58.14 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
+|.|.||+||||+|.++.|+..+ +...|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHH
Confidence 57899999999999999999987 445666554
No 288
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.91 E-value=0.013 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...|+|+|++|+|||||++.|.+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999875
No 289
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.80 E-value=0.0091 Score=71.14 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=27.3
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 14 Lkni~~~ip~~~---l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRIPKNR---LVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEEETTS---EEEEEESTTSSSHHHH
T ss_pred cCcceeccCCCc---EEEEECCCCCcHHHHH
Confidence 899999999999 9999999999999997
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.78 E-value=0.019 Score=57.03 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
-+.|.||+|+||||+++.|++.++ ...+.+++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~-~~~~~i~~ 78 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK-VPFFTISG 78 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CCEEEECS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC-CCEEEEeH
Confidence 488999999999999999999862 22344443
No 291
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.75 E-value=0.011 Score=70.63 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=27.0
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHH
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (661)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 34 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 34 LKNIDVEIPRGK---LVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CCSEEEEEETTS---EEEEEESTTSSHHHHH
T ss_pred CCceeeeccCCc---EEEEECCCCCCHHHHH
Confidence 899999999999 9999999999999986
No 292
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.67 E-value=0.011 Score=59.14 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=21.1
Q ss_pred EeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.++.+.-....+..+|.|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 12 LEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -----------CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44554443333344599999999999999999999887
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.62 E-value=0.022 Score=62.21 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=27.3
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++++|. ++ .+|+|+|++||||||++..|+..+
T Consensus 91 ~~i~l~--~~---~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK--DR---NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC--SS---EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC--CC---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 466665 44 499999999999999999999987
No 294
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.58 E-value=0.014 Score=60.62 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=25.7
Q ss_pred eccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+++.+.+ + +.+|+|+|||||||++++|.-++
T Consensus 17 ~~~l~~~~-g---~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSD-R---VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCS-S---EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCC-C---cEEEECCCCCcHHHHHHHHHHHh
Confidence 34455443 3 89999999999999999999776
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.57 E-value=0.023 Score=62.35 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=28.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll-p---~~g~I~lD~~ 101 (661)
++.+|+++|++||||||++..|+..+ + .+..+..|-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 46799999999999999999999887 2 3344555533
No 296
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.48 E-value=0.0054 Score=58.51 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=27.4
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
.+++++++..++. .|+|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~----ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTG----KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCE----EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCc----EEEEECCCCCCHHHHHHHHhc
Confidence 4567777766554 489999999999999999865
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.47 E-value=0.015 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.|+|+|++|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 298
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.43 E-value=0.026 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999875
No 299
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.38 E-value=0.028 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 300
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.35 E-value=0.028 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 344678999999999999999999874
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.34 E-value=0.021 Score=59.30 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.2
Q ss_pred ccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++... + .+|+++|++|+||||++..|+..+
T Consensus 92 i~~~~~-~---~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-P---YVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-S---EEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-C---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 666543 4 499999999999999999999887
No 302
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.31 E-value=0.026 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|||+|+.||||||+++.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 303
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.30 E-value=0.025 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.|+++|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999875
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.027 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+.|+|+|++|+|||||++.|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999863
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.25 E-value=0.03 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.24 E-value=0.031 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.|+|+|++|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 307
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.24 E-value=0.025 Score=55.57 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+.|+|+|++|+|||||++.|.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345789999999999999999999864
No 308
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.24 E-value=0.024 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+|.|.|++||||||+++.|+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999887
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.20 E-value=0.031 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999875
No 310
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.19 E-value=0.02 Score=59.21 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+|+|+|++|+|||||++.|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999985
No 311
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.18 E-value=0.014 Score=55.30 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=28.1
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+...+..+..+..+.|.||+|+||||+++.++..+
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444455545589999999999999999999875
No 312
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.18 E-value=0.22 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+..|.|.||+|+||||+++.++..+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 334468999999999999999999887
No 313
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.13 E-value=0.035 Score=55.10 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecCCc
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~ 101 (661)
.|.|+||+||||||++..|+.... ..|+.|..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~ 67 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH--RLIADDRV 67 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC--EEEESSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--eEEecchh
Confidence 799999999999999999998753 45665554
No 314
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.12 E-value=0.033 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
++.+.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999875
No 315
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.12 E-value=0.031 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999875
No 316
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.08 E-value=0.032 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|.|++|+||||+++.++..+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999875
No 317
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.05 E-value=0.035 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 318
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.04 E-value=0.022 Score=60.04 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.3
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+|+++++.++ .|+|+|++|||||||++.|.+.
T Consensus 24 ~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 346788888876 6999999999999999999994
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.98 E-value=0.031 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+.|+|+|.+|||||||++.|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 320
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.97 E-value=0.034 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999999865
No 321
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.97 E-value=0.042 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999764
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.94 E-value=0.042 Score=50.72 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999986
No 323
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.94 E-value=0.024 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|.|.|++||||||+++.|+..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999887
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.93 E-value=0.037 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999875
No 325
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.92 E-value=0.035 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 326
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.035 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.90 E-value=0.032 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 328
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.90 E-value=0.048 Score=57.55 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=29.7
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecC
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD 99 (661)
...+.++|+|+|+.|+||||+++.|+..+ ..++.+..|
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34556799999999999999999998775 245556555
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.89 E-value=0.036 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999875
No 330
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.86 E-value=0.04 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44567999999999999999999875
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.85 E-value=0.034 Score=65.26 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.8
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEecCC
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~ 100 (661)
.+.+++ .|.|.||+||||||++++|++.++ ...+.+++
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l~-~~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANETG-AFFFLING 271 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTTT-CEEEEEEH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHcC-CcEEEEEc
Confidence 345555 899999999999999999999873 23444443
No 332
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.85 E-value=0.045 Score=60.20 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=29.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~ 101 (661)
+|.+|.++|++||||||++..|+..+ ..+..+..|-+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 47899999999999999999999876 13445555544
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.83 E-value=0.038 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999875
No 334
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.81 E-value=0.03 Score=56.43 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|++|||||||++.|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999876
No 335
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.80 E-value=0.032 Score=63.18 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=26.1
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.+.++.+|.|+|.+||||||+++.|+..+.
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 445568999999999999999999999863
No 336
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.79 E-value=0.036 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 337
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.77 E-value=0.035 Score=53.20 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+.|.||+|+||||+++.++..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999875
No 338
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.75 E-value=0.036 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 467999999999999999999864
No 339
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.75 E-value=0.036 Score=58.05 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999886543
No 340
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.74 E-value=0.04 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|.+|+|||||++.|.+.
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 341
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.67 E-value=0.052 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.++.|+|+|++|+|||||++.|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999999863
No 342
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.67 E-value=0.038 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|.||+|+||||+++.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999875
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.62 E-value=0.043 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999874
No 344
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=93.60 E-value=0.16 Score=52.58 Aligned_cols=157 Identities=10% Similarity=0.094 Sum_probs=72.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCC-chhhHHHHHHhhhccccccccccccc-
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRGLKEGKAVQVPIYDFK- 144 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~-d~~tl~enL~~L~~g~~I~~P~yd~~- 144 (661)
..|.|+|| ||+|+++.|...+|..-..+.-......+.-...-.+.... +.+.+ -..+.+|..+++..|.-.
T Consensus 106 r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef---~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 106 RPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKM---EKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHH---HHHHHTTCEEEEEEETTEE
T ss_pred CEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHH---HHHHHCCCcEEEEEEcCcE
Confidence 47889999 79999999998875321111111111111100000011111 22222 233445666666544322
Q ss_pred cccccccceeeccCccEEEEEehhhhhccc--cCCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccch
Q 006094 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMY 222 (661)
Q Consensus 145 ~~~r~~~~~~~v~~a~VVIVEGilaL~deL--r~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~ 222 (661)
-+.....-...+...+.+|+|.-......+ ...+-+.|||.+|.-..|.+ +..|| +.+++..++..... ..
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-----L~~R~-t~~~i~~rl~~a~~-~e 252 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-----INKRI-TEEQARKAFDRATK-LE 252 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-----HCTTS-CHHHHHHHHHHHHH-HH
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-----HHhcC-CHHHHHHHHHHHHH-HH
Confidence 111111000113445667777543322222 23455899999886444433 33456 44555555543321 11
Q ss_pred hhccCCCCCCceEEEECC
Q 006094 223 KAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 223 ~~fIeP~k~~ADIII~N~ 240 (661)
..+ ....|++|+|+
T Consensus 253 ~~~----~~~fd~vivNd 266 (295)
T 1kjw_A 253 QEF----TECFSAIVEGD 266 (295)
T ss_dssp HHH----GGGCSEEECCS
T ss_pred Hhc----cccCeEEEECc
Confidence 111 13468888876
No 345
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.58 E-value=0.048 Score=49.55 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999875
No 346
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.52 E-value=0.037 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|++|+|||||++.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999864
No 347
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.51 E-value=0.041 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|.||+|+||||+++.+++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 348
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.50 E-value=0.053 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 349
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.47 E-value=0.044 Score=58.13 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++|+ ++.|.|++|||||||+..++...
T Consensus 58 l~~G~---iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGR---VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 45777 99999999999999999988654
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.052 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999875
No 351
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.42 E-value=0.043 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhc
Confidence 356999999999999999999754
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.41 E-value=0.051 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467999999999999999999874
No 353
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.051 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34578999999999999999999874
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.35 E-value=0.049 Score=49.61 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998753
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.33 E-value=0.041 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.28 E-value=0.052 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+.|+|+|++|+|||||++.|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999864
No 357
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.27 E-value=0.037 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|.|.|++||||||.++.|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 358
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.27 E-value=0.041 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999875
No 359
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.25 E-value=0.06 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|.||+|+||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 379999999999999999999986
No 360
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.24 E-value=0.049 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=22.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+.|+|+|.+|+|||||++.+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998763
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.21 E-value=0.047 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999864
No 362
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.20 E-value=0.07 Score=55.50 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++|. ++.|.|++|||||||+..++...
T Consensus 104 l~~G~---i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRT---MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCc---EEEEECCCCCCHhHHHHHHHHHH
Confidence 56777 99999999999999999998764
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.18 E-value=0.06 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999875
No 364
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.13 E-value=0.062 Score=49.91 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44567999999999999999999874
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.11 E-value=0.06 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999874
No 366
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.08 E-value=0.06 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999864
No 367
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.08 E-value=0.069 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999865
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.06 E-value=0.058 Score=49.70 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999865
No 369
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.05 E-value=0.062 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+.|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999875
No 370
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.00 E-value=0.05 Score=54.01 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+.+.|+|+|.+|+|||||++.|.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 344578999999999999999999864
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.92 E-value=0.067 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 372
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.91 E-value=0.044 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=23.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.+|.|.|++||||||+++.|+..+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4999999999999999999999984
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.90 E-value=0.051 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 46999999999999999998653
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.89 E-value=0.066 Score=49.49 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..+-|+|+|.+|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999998875
No 375
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.88 E-value=0.063 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-+.|.||+|+||||+++.++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999987
No 376
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.059 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
++.+-|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 377
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.83 E-value=0.072 Score=49.80 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|++|+|||||++.+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 378
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.78 E-value=0.067 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 379
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.77 E-value=0.065 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-|.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 380
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.75 E-value=0.047 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
.+.+.|+|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999988763
No 381
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.70 E-value=0.05 Score=60.82 Aligned_cols=28 Identities=4% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
++..+|.|+|.+||||||+++.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999999884
No 382
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.69 E-value=0.076 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999888764
No 383
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.68 E-value=0.063 Score=55.04 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..|..+.|.||+|+|||++++.|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688899999999999999999986
No 384
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.64 E-value=0.07 Score=47.95 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~l 89 (661)
-|+|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 385
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.63 E-value=0.054 Score=55.75 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334489999999999999999999876
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.60 E-value=0.077 Score=50.05 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.++.+-|+|+|++|+|||||++.+.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345678999999999999999999875
No 387
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.60 E-value=0.065 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999853
No 388
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.54 E-value=0.051 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+-|+|+|++|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999999864
No 389
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.54 E-value=0.072 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.|.||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999886
No 390
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.54 E-value=0.077 Score=49.64 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
....+-|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 344578999999999999999999875
No 391
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.50 E-value=0.064 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998753
No 392
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.085 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|.+|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999875
No 393
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.49 E-value=0.078 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 394
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.47 E-value=0.074 Score=49.59 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+.|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998764
No 395
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.46 E-value=0.072 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-|.|.|++|+|||++++.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999875
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.44 E-value=0.076 Score=51.71 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.4
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+++.-..+. |. -|.|+|+||+||||++-.|...
T Consensus 6 ~lHas~v~v~-G~---gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 6 TWHANFLVID-KM---GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEESEEEEET-TE---EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEC-CE---EEEEEcCCCCCHHHHHHHHHHc
Confidence 3455444443 33 5999999999999999999875
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.44 E-value=0.074 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 398
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.44 E-value=0.053 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~l 89 (661)
+|.|+|++||||||++..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999864
No 399
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.079 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|++|+|||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999875
No 400
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.38 E-value=0.034 Score=57.06 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.0
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++.+...+..+..+. +.|.||+|+||||+++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 4455555566654333 8999999999999999999875
No 401
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.34 E-value=0.12 Score=50.88 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=30.2
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEecCC
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDN 100 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~llp---~~g~I~lD~ 100 (661)
.++.+..++.+.|..|+||||++..|+..+. ....+..|-
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3556678999999999999999999985541 344555553
No 402
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.34 E-value=0.066 Score=54.15 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.-+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999998875
No 403
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.32 E-value=0.075 Score=53.01 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
...+.|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 446789999999999999999998763
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.29 E-value=0.078 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3467999999999999999999975
No 405
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.24 E-value=0.073 Score=56.49 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-+.|+|++||||||+++.|...+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 406
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.22 E-value=0.077 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999864
No 407
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.22 E-value=0.094 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999998874
No 408
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.20 E-value=0.082 Score=57.29 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
..|||+|.+|+|||||++.|.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999975
No 409
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.19 E-value=0.11 Score=54.05 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD 99 (661)
.-|.|.||+|+|||++++.++..+.....+.++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 468899999999999999999987333344433
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.18 E-value=0.059 Score=58.90 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=29.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCc
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~ 101 (661)
++.+|+|+|++|+||||++..|+..+ ..+..+..|-+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 35689999999999999999999876 23555666554
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.13 E-value=0.066 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=21.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999864
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.12 E-value=0.08 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999853
No 413
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.11 E-value=0.077 Score=54.17 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999874
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.10 E-value=0.09 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999874
No 415
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.10 E-value=0.096 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999864
No 416
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.07 E-value=0.093 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.07 E-value=0.091 Score=49.63 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.02 E-value=0.088 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999875
No 419
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.01 E-value=0.085 Score=55.47 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+++|+ ++.|.|++|||||||+..++..
T Consensus 119 l~~G~---i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMA---ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSE---EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 45566 9999999999999999999886
No 420
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.01 E-value=0.08 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999874
No 421
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.99 E-value=0.074 Score=51.63 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
+|.|-|+-||||||.++.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 422
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.091 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999875
No 423
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.96 E-value=0.11 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=29.3
Q ss_pred eEEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+++..+.+ .|. -|.|+|+||+||||++..|.+.
T Consensus 132 ~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 45677776666 444 6999999999999999999885
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.92 E-value=0.096 Score=48.74 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
......|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344568999999999999999998764
No 425
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.91 E-value=0.11 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.-+.|.||+|+||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578999999999999999999875
No 426
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.88 E-value=0.081 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..+.|.||+|+||||+++.++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 427
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.87 E-value=0.065 Score=58.44 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.0
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..|+.+..-+.+|+ ++.|+|++|+|||||+..++...
T Consensus 191 ~~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 34677776688899 99999999999999999998875
No 428
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.87 E-value=0.09 Score=55.70 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.7
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+++.+...+ + +..|+|+|||||||++.+|.-.
T Consensus 17 ~~~~i~f~~-g---l~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 17 VNSRIKFEK-G---IVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEECCS-E---EEEEEECTTSSHHHHHHHHHHH
T ss_pred cceEEecCC-C---eEEEECCCCCCHHHHHHHHHHH
Confidence 344444433 3 8999999999999999999864
No 429
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=91.84 E-value=0.031 Score=62.04 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=29.8
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.++++++.+.+| +.+|+|+|||||||++.+|...++
T Consensus 50 ~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 50 TITQLELELGGG----FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp TBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred ceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 356777776553 799999999999999999998873
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.078 Score=50.42 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=24.2
Q ss_pred EEEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
....++.|.... .+-|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~~~~~~~~~~---~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 13 LGTENLYFQSMI---RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ------CGGGSE---EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccc---CcEEEEECcCCCCHHHHHHHHhcC
Confidence 344555555432 357999999999999999999874
No 431
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.82 E-value=0.083 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.2
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006094 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (661)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~La 87 (661)
.+.+|+ .+.|.|++||||||++..+.
T Consensus 72 ~i~~g~---~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNS---VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCS---EEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCC---EEEEEeCCCCCcHHhHHHHH
Confidence 345677 89999999999999877654
No 432
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.81 E-value=0.083 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998764
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.094 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+-|+|+|++|+|||||++.+.+.-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34679999999999999999998763
No 434
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.79 E-value=0.11 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.4
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
+++|. ++.|+|++|+|||||+-.++.
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHHH
Confidence 56777 999999999999999987653
No 435
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.77 E-value=0.083 Score=50.12 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHH
Q 006094 63 NHGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
....+.|+|+|.+|+|||||++.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34457899999999999999998864
No 436
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.76 E-value=0.082 Score=50.08 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|++|+|||||++.+.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999754
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.75 E-value=0.13 Score=57.38 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEecCCc
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll----p~~g~I~lD~~ 101 (661)
.++.+|+|+|++||||||++..|+..+ ..+..+..|-+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 456799999999999999999999664 13556666644
No 438
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.71 E-value=0.11 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|.+|+|||||++.|.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34467999999999999999998753
No 439
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.70 E-value=0.049 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+.|+|+|.+|+|||||++.|.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.67 E-value=0.1 Score=49.70 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 44567999999999999999999864
No 441
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.63 E-value=0.079 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.|+|+|.+|||||||++.|.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999875
No 442
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.59 E-value=0.097 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-|.|.||+|+||||+++.|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 443
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.56 E-value=0.094 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|||||||++.|.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999875
No 444
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.56 E-value=0.079 Score=56.48 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+|+|+|++|||||||++.|.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999763
No 445
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.53 E-value=0.13 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 446
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.50 E-value=0.12 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.-+.|.||+|+||||+++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.48 E-value=0.076 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=11.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999988753
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.36 E-value=0.11 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 449
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.35 E-value=0.11 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999853
No 450
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.27 E-value=0.1 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999853
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.25 E-value=0.056 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~ll 90 (661)
+.|.||+|+||||+++.|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999875
No 452
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.24 E-value=0.11 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999874
No 453
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.24 E-value=0.079 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|+|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.20 E-value=0.11 Score=52.23 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.++...+.|+++|.+|+|||||++.|.+.
T Consensus 34 ~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 34 QEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34445678999999999999999999875
No 455
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.19 E-value=0.12 Score=48.98 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 33467999999999999999999864
No 456
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.16 E-value=0.097 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34479999999999999999999875
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.10 E-value=0.13 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999998864
No 458
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.09 E-value=0.1 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|||||||++.|.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 347999999999999999999986
No 459
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.08 E-value=0.1 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.++|.|-|+-||||||+++.|+..+.
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999999999873
No 460
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.07 E-value=0.12 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999975
No 461
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.06 E-value=0.099 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.+.|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999988754
No 462
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.05 E-value=0.12 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+-.|+|+|.+|+|||||++.|.+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999875
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.12 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.+.+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 464
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.02 E-value=0.1 Score=49.19 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.1
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
++++.+-|.|+|.+|+|||||++.+.+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44556789999999999999999887654
No 465
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.00 E-value=0.13 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.+|.++|.+||||||+++.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 466
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=90.94 E-value=0.096 Score=56.08 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+.|||+|.+|+|||||++.|.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999986
No 467
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.90 E-value=0.13 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.+-|+|+|.+|+|||||++.+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999864
No 468
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=90.87 E-value=0.9 Score=52.59 Aligned_cols=157 Identities=9% Similarity=0.082 Sum_probs=73.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEecCCccccccccccccCCCCCC-chhhHHHHHHhhhccccccccccccc-
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRGLKEGKAVQVPIYDFK- 144 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD~~~~~~~~i~~~fq~p~~~-d~~tl~enL~~L~~g~~I~~P~yd~~- 144 (661)
..|.|+||+ |+|+++.|...+|..-....-......+.-...-.++... ..+.+ -..+.++..+++..|.-.
T Consensus 532 r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f---~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 532 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKM---EKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHH---HHHHhcCCceEEEEECCcc
Confidence 478899994 9999999998775311111111111111100000011111 22222 233445666666544322
Q ss_pred cccccccceeeccCccEEEEEehhhhhcccc--CCCCEEEEEEcCchhHHHHHHHHHHHhhCCCHHHHHHHHHhhcccch
Q 006094 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMY 222 (661)
Q Consensus 145 ~~~r~~~~~~~v~~a~VVIVEGilaL~deLr--~llDlkIfVdad~diRLiRRI~RDi~eRG~s~EeVi~q~~~~v~P~~ 222 (661)
.+.....-...+...+.+|+|.-......+. ..+-+.|||.++.-..|.+ +..|| +.+++..++..... ..
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-----l~~R~-t~~~~~~rl~~a~~-~e 678 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-----INKRI-TEEQARKAFDRATK-LE 678 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-----HhccC-CHHHHHHHHHHHHH-HH
Confidence 2221110111234456777776443222222 4555999999886554443 34456 33455555543311 11
Q ss_pred hhccCCCCCCceEEEECC
Q 006094 223 KAFIEPDLQTAHIKIINK 240 (661)
Q Consensus 223 ~~fIeP~k~~ADIII~N~ 240 (661)
.. .....|++|+|+
T Consensus 679 ~~----~~~~fd~vi~Nd 692 (721)
T 2xkx_A 679 QE----FTECFSAIVEGD 692 (721)
T ss_pred Hh----ccccCcEEEECc
Confidence 11 123568888876
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.83 E-value=0.13 Score=48.56 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999874
No 470
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.79 E-value=0.12 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999987653
No 471
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.74 E-value=0.13 Score=55.33 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=23.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEE
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI 96 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~llp~~g~I 96 (661)
+.++|.|-|+-||||||+++.|++.+...|++
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv 79 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence 34689999999999999999999987433333
No 472
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.70 E-value=0.14 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 344589999999999999999999865
No 473
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=90.57 E-value=0.12 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp 91 (661)
.++|.|-|+-||||||+++.|++.+.
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999998874
No 474
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.41 E-value=0.16 Score=52.57 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=29.2
Q ss_pred EEeeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.|+.+.--+.+|+ ++.|+|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 3555554577888 99999999999999999988653
No 475
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.34 E-value=0.14 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
..|+|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999875
No 476
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.30 E-value=0.18 Score=53.61 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.3
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+++|. ++.|.|++|+|||||+..++...
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 55677 99999999999999999888754
No 477
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.25 E-value=0.17 Score=53.22 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.-|.|.||+|+||||+++.|+..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999999987
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.25 E-value=0.11 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHH
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
.+.+-|+|+|++|+|||||++.+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999998853
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.23 E-value=0.24 Score=53.86 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD 99 (661)
+.-|.|.||+|+|||++++.|+..+.....+.++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3478999999999999999999987333444444
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.22 E-value=0.14 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.6
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
+++|. ++.|.|++|||||||+..++..
T Consensus 95 l~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 45666 9999999999999999998864
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.22 E-value=0.15 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 457999999999999999999976
No 482
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.14 E-value=0.16 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
.+.|.||+|+||||+++.|+..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 483
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.14 E-value=0.2 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|+|+|++|+|||||++.|.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 484
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=90.05 E-value=0.13 Score=59.09 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..|+|+|++|+|||||++.|.+..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCChHHHHHHHHHHhc
Confidence 389999999999999999999764
No 485
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.05 E-value=0.18 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|.+|+|||||++.+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 486
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.04 E-value=0.1 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
+-|+|+|++|+|||||++.|.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 44799999999999999998664
No 487
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.03 E-value=0.15 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+..+.|.||+|+|||||++.|+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999999875
No 488
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.01 E-value=0.075 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=5.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~l 89 (661)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999988764
No 489
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=89.97 E-value=0.25 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~l 89 (661)
..|+|+|.+|+|||||++.|.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999984
No 490
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.86 E-value=0.16 Score=56.26 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006094 69 VGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 69 IGI~GpSGSGKSTLak~La~ll 90 (661)
|.|.||+|+||||++++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 491
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.84 E-value=0.18 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~ll 90 (661)
-|.|.|++|+|||++++.|+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 57799999999999999999886
No 492
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.84 E-value=0.18 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.-|.|.||+|+|||++++.++..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3468999999999999999999886
No 493
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.61 E-value=0.081 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006094 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988753
No 494
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.55 E-value=0.072 Score=55.07 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=26.9
Q ss_pred ccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.-.+..+..+..+.|.||.|+||||+++.++..+
T Consensus 28 L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 28 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33334455544578999999999999999999876
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.50 E-value=0.23 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006094 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (661)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~La~l 89 (661)
..+-|.|+|.+|+|||||++.+.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999874
No 496
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.48 E-value=0.22 Score=54.72 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEecC
Q 006094 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (661)
Q Consensus 68 IIGI~GpSGSGKSTLak~La~llp~~g~I~lD 99 (661)
-|.+.||+|+||||+++.|+..++ ...+.++
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~-~~~~~v~ 82 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN-APFIKVE 82 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC-CCceeec
Confidence 488999999999999999999983 3344444
No 497
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.41 E-value=0.3 Score=54.00 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=26.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEecC
Q 006094 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (661)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~La~llp~~g~I~lD 99 (661)
+..+.|.||+|+||||+++.++..+ +...+.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l-~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEe
Confidence 3589999999999999999999987 33344443
No 498
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.40 E-value=0.24 Score=50.63 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=28.8
Q ss_pred eeccceeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006094 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ll 90 (661)
+.+.-.+..+..+.++.+.||+|+||||+++.++..+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3344445566656688888999999999999999987
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.28 E-value=0.16 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006094 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (661)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~La~ll 90 (661)
..+.|.||+|+||||+++.++..+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 500
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.14 E-value=0.19 Score=56.23 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.9
Q ss_pred ccceeccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006094 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (661)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~La~ 88 (661)
+.+.+.++. -+.|+|.+||||||+++.|..
T Consensus 160 v~ldL~~~p---HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKMP---HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGSC---SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccCc---eEEEECCCCCCHHHHHHHHHH
Confidence 455566666 799999999999999999875
Done!