BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006099
(661 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/77 (75%), Positives = 68/77 (88%)
Query: 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314
+P P+ FRCPISLELMKDPVIVSTGQTYERS I+KWL+AGH+TCPK+Q+TL +TPN
Sbjct: 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 315 YVLRSLIAQWCEANGIE 331
YVL+SLIA WCE+NGIE
Sbjct: 62 YVLKSLIALWCESNGIE 78
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 10/208 (4%)
Query: 362 KLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL 421
+L S ++Q SA + + + A+ +AGA+P LV LLS+P+ + + A+ AL
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 422 NL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGA 476
N+ S + +++ +GA+P++V +L + + + A L++LS I +E +
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASGGNEQIQAVID 136
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-RAGVVPTLMHLLTEPGGGM 535
+GA+P LV LLS ++ ++A AL N+ + +AV AG +P L+ LL+ P +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 536 VDEALAILA-ILSSHPEGKAAIGAAEAV 562
+ EAL L+ I S E K A+ A A+
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGAL 224
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 3/198 (1%)
Query: 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEH 415
+E L+ LTS E Q+ AA ++ +A A AI +AG + +LV LL++ DS Q+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 416 AVTALLNLSICEDNK-GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSL-SVIDENKVT 473
A AL N++ D +IV +G V +V +L E ++ AA L ++ S DE
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA-VRAGVVPTLMHLLTEPG 532
I +G + LV LL+ +K+AA AL N+ KA V AG V L+ LLT
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 533 GGMVDEALAILAILSSHP 550
+ EA LA ++S P
Sbjct: 184 SEVQKEAARALANIASGP 201
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 11/264 (4%)
Query: 368 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS--- 424
P+ Q AA + +A ++N + + GA+P+ V LL + +E AV AL N++
Sbjct: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS 191
Query: 425 -ICEDNKGSIVSSGAV-PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPP 482
C D ++++GA+ P + + + NA TL + A+P
Sbjct: 192 PKCRD---LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 248
Query: 483 LVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEALA 541
L L+ + DA AL L +K +AV AGV P L+ LL P ++ AL
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 542 ILA-ILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRN-RENAAAVLVHLCAGDQQYLAEAK 599
+ I++ I +A+P L+ ++ ++ ++ A + ++ AG++ +
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 600 ELGVMGPLVDLAQNGTDRGKRKAA 623
G++GPLV+L Q K++AA
Sbjct: 369 NAGIIGPLVNLLQTAEFDIKKEAA 392
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 374 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG-S 432
A + L+ D A+ EAG P LV LL P A+ + N+ +D +
Sbjct: 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323
Query: 433 IVSSGAVPSIVHVLRIGSMEA-RENAAATLFSLSVIDENKV-TIGASGAIPPLVTLLSEG 490
I+ A+P ++ +L ++ ++ A T+ +++ +++++ + +G I PLV LL
Sbjct: 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 383
Query: 491 TQRGKKDAATALFN 504
KK+AA A+ N
Sbjct: 384 EFDIKKEAAWAISN 397
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVT 418
++ +L S ++ +SA ++ +A + A+ +AGA+P LV LLS+P+ + + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 419 ALLNLSICEDNK-GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVT 473
AL N++ + + +++ +GA+P++V +L + + + A L++LS I +E
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASGGNEQIQA 133
Query: 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPG 532
+ +GA+P LV LLS ++ ++A AL N+ + +AV+ AG P L L + P
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 533 GGMVDEALAILAILSSH 549
+ EA L + SH
Sbjct: 194 EKIQKEAQEALEKIQSH 210
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 11/264 (4%)
Query: 368 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS--- 424
P+ Q AA + +A ++N + + GA+P+ V LL + +E AV AL N++
Sbjct: 94 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS 153
Query: 425 -ICEDNKGSIVSSGAV-PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPP 482
C D ++++GA+ P + + + NA TL + A+P
Sbjct: 154 PKCRD---LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 210
Query: 483 LVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEALA 541
L L+ + DA AL L +K +AV AGV P L+ LL P ++ AL
Sbjct: 211 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 270
Query: 542 ILA-ILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRN-RENAAAVLVHLCAGDQQYLAEAK 599
+ I++ I +A+P L+ ++ ++ ++ A + ++ AG++ +
Sbjct: 271 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 330
Query: 600 ELGVMGPLVDLAQNGTDRGKRKAA 623
G++GPLV+L Q K++AA
Sbjct: 331 NAGIIGPLVNLLQTAEFDIKKEAA 354
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 374 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG-S 432
A + L+ D A+ EAG P LV LL P A+ + N+ +D +
Sbjct: 226 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 285
Query: 433 IVSSGAVPSIVHVLRIGSMEA-RENAAATLFSLSVIDENKV-TIGASGAIPPLVTLLSEG 490
I+ A+P ++ +L ++ ++ A T+ +++ +++++ + +G I PLV LL
Sbjct: 286 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 345
Query: 491 TQRGKKDAATALFN 504
KK+AA A+ N
Sbjct: 346 EFDIKKEAAWAISN 359
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 9/194 (4%)
Query: 362 KLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL 421
+L S ++Q SA + + + A+ +AGA+P LV LLS+P+ + + A+ AL
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 422 NL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGA 476
N+ S + +++ +GA+P++V +L + + + A L++LS I +E +
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASGGNEQIQAVID 136
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGM 535
+GA+P LV LLS ++ ++A AL N+ + +AV+ AG + L L + +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 536 VDEALAILAILSSH 549
EA L L SH
Sbjct: 197 QKEAQEALEKLQSH 210
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 9/197 (4%)
Query: 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVT 418
++ +L S ++ +SA ++ +A + A+ +AGA+P LV LLS+P+ + + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 419 ALLNLSICEDNK-GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVT 473
AL N++ + + +++ +GA+P++V +L + + + A L++LS I +E
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNIASGGNEQIQA 133
Query: 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPG 532
+ +GA+P LV LLS ++ ++A AL N+ + +AV+ AG + L L +
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 533 GGMVDEALAILAILSSH 549
+ EA L L SH
Sbjct: 194 EKIQKEAQEALEKLQSH 210
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 250 DRNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309
D K IPD IS ELM++P I +G TY+R IE+ L+ P T+ LT
Sbjct: 95 DEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154
Query: 310 AVTPNYVLRSLIAQWCEANG 329
+ PN ++ +I + + NG
Sbjct: 155 QLIPNLAMKEVIDAFIQENG 174
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 373 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC--EDNK 430
+AA ++ L RN + + + IP+LVGLL P A AL N+S +DNK
Sbjct: 67 NAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126
Query: 431 GSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTI 474
+I + VP++V +LR M+ E TL++LS D K+ I
Sbjct: 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 171
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 250 DRNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE-AGHRTCPKTQQTLTS 308
D K IPD IS ELM++P I +G TY+R IE+ L+ GH P T+ LT
Sbjct: 197 DEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN-PVTRSPLTQ 255
Query: 309 TAVTPNYVLRSLIAQWCEANG 329
+ PN ++ +I + NG
Sbjct: 256 EQLIPNLAMKEVIDAFISENG 276
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 317
IPD IS ELM++P I +G TY+R IE+ L+ P T+ LT + PN +
Sbjct: 2 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 318 RSLIAQWCEANG 329
+ +I + NG
Sbjct: 62 KEVIDAFISENG 73
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 317
IPD IS ELM +P I +G TY+R IE+ L+ P T+ LT + PN +
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 318 RSLIAQWCEAN 328
+ +I + + N
Sbjct: 70 KEVIDAFIQEN 80
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R +G + L+ + +AI ++G IP LV +L +P HA+T L NL + ++
Sbjct: 208 ETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 323
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 384 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 442 GIEALVRTVLRAGDR 456
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
+ TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 271 AVRLAGGLQKMVALLNK 287
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ D +A + +P++V LL P A
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 571 ACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 27/283 (9%)
Query: 374 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR--TQEHAVTALLNLSI----CE 427
AAG + L N N++ + + G I LV + R E A+ AL +L+ E
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 428 DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLF-SLSVIDENKVTIGASGAIPPLVTL 486
+ ++ +P +V +L S A L +L++ N + GAIP LV L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 487 LSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546
L Q ++ + +G + + + V+ L IL
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------------------VEACTGALHIL 579
Query: 547 SSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGP 606
+ + I +P+ V+++ + + AA VL L A D++ + G P
Sbjct: 580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAP 638
Query: 607 LVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649
L +L + + AA +L RMS Q + ++ E S +
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 373 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
+ G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 571 ACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLR 318
PD+FR P+ LM DPV + +G +RS I + L T P +QTLT + + P L+
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPELK 85
Query: 319 SLIAQWC 325
I W
Sbjct: 86 EQIQAWM 92
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 73 ETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 131
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 132 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 189 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 248
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 249 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 306
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 307 GIEALVRTVLRAGDR 321
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 16 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 75
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 76 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 135
Query: 515 AVR-AGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKAAIGAAEAVPVLVEVI 569
AVR AG + ++ LL + + L IL+ + E K I A+ LV ++
Sbjct: 136 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 316 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 375
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 376 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 435
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 436 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 485
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 37/287 (12%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 322
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 323 DITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRN 380
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 381 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 440
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 441 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 499
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649
PL +L + + AA +L RMS Q + ++ E S +
Sbjct: 500 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 546
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 439 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 486
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 76 ETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 134
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 135 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 191
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 192 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 251
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 252 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 309
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 310 GIEALVRTVLRAGDR 324
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 19 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 78
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 79 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 138
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 139 AVRLAGGLQKMVALLNK 155
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 319 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 378
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 379 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 438
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 439 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 488
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 267 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 325
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 326 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 383
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 384 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 443
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 444 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 502
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 503 ATAPLTELLHSRNEGVATYAAAVLFRMS 530
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 442 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 489
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 79 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 137
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 138 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 194
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 195 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 254
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 255 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 312
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 313 GIEALVRTVLRAGDR 327
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 22 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 81
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 82 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 141
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 142 AVRLAGGLQKMVALLNK 158
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 322 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 381
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 382 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 441
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 442 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 491
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 270 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 328
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 329 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 386
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 387 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 446
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 447 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 505
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 506 ATAPLTELLHSRNEGVATYAAAVLFRMS 533
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 445 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 492
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 78 ETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 136
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 137 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 193
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 194 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 253
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 254 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 311
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 312 GIEALVRTVLRAGDR 326
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 21 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 80
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 81 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 140
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 141 AVRLAGGLQKMVALLNK 157
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 321 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 380
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 381 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 440
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 441 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 490
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 269 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 327
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 328 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 385
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 386 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 445
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 446 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 504
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 505 ATAPLTELLHSRNEGVATYAAAVLFRMS 532
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 444 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 491
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 72 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 131 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 187
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 248 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 306 GIEALVRTVLRAGDR 320
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 75 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 135 AVRLAGGLQKMVALLNK 151
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 375 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 434
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 435 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 27/283 (9%)
Query: 374 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR--TQEHAVTALLNLSI----CE 427
AAG + L N N++ + + G I LV + R E A+ AL +L+ E
Sbjct: 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342
Query: 428 DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLF-SLSVIDENKVTIGASGAIPPLVTL 486
+ ++ +P +V +L S A L +L++ N + GAIP LV L
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
Query: 487 LSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546
L Q ++ + +G + + + V+ L IL
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------------------VEGCTGALHIL 443
Query: 547 SSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGP 606
+ + I +P+ V+++ + + AA VL L A D++ + G P
Sbjct: 444 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAP 502
Query: 607 LVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649
L +L + + AA +L RMS Q + ++ E S +
Sbjct: 503 LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 545
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 73 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 131
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 132 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 189 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 248
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 249 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 306
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 307 GIEALVRTVLRAGDR 321
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 16 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 75
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 76 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 135
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 136 AVRLAGGLQKMVALLNK 152
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 316 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 375
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 376 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 435
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 436 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 485
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 322
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 323 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 380
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 381 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 440
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 441 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 499
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 500 ATAPLTELLHSRNEGVATYAAAVLFRMS 527
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 439 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 486
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 62 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 120
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 121 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 177
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 178 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 237
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 238 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 295
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 296 GIEALVRTVLRAGDR 310
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 5 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 64
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 65 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 124
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 125 AVRLAGGLQKMVALLNK 141
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 305 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 364
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 365 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 424
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 425 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 474
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 253 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 311
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 312 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 369
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 370 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 429
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 430 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 488
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 489 ATAPLTELLHSRNEGVATYAAAVLFRMS 516
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 428 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 475
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 60 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 118
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 119 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 176 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 235
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 236 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 293
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 294 GIEALVRTVLRAGDR 308
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 3 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 62
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 63 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 122
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 123 AVRLAGGLQKMVALLNK 139
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 303 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 362
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 363 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 422
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 423 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 472
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 310 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 367
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 368 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 427
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 428 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 486
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 487 ATAPLTELLHSRNEGVATYAAAVLFRMS 514
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 426 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 473
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 75 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 251 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 309 GIEALVRTVLRAGDR 323
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 138 AVRLAGGLQKMVALLNK 154
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 438 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 501
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 441 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 64 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 122
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 123 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 179
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 180 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 239
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 240 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 297
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 298 GIEALVRTVLRAGDR 312
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 7 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 66
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 67 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 126
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 127 AVRLAGGLQKMVALLNK 143
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 307 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 366
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 367 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 426
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 427 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 476
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 255 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 313
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 314 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 371
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 372 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 431
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 432 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 490
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 491 ATAPLTELLHSRNEGVATYAAAVLFRMS 518
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 430 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 477
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 77 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 135
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 136 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 193 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 252
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 253 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 310
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 311 GIEALVRTVLRAGDR 325
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 20 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 79
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 80 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 139
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 140 AVRLAGGLQKMVALLNK 156
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 320 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 379
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 380 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 439
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 440 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 489
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 326
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 327 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 384
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 385 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 444
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 445 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 503
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 504 ATAPLTELLHSRNEGVATYAAAVLFRMS 531
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 443 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 490
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 77 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 135
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 136 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 193 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 252
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 253 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 310
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 311 GIEALVRTVLRAGDR 325
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 20 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 79
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 80 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 139
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 140 AVRLAGGLQKMVALLNK 156
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 320 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 379
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 380 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 439
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 440 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 489
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 326
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 327 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 384
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 385 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 444
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 445 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 503
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 504 ATAPLTELLHSRNEGVATYAAAVLFRMS 531
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 443 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 490
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 60 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 118
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + +V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 119 GAKMAVRLAGGLQKMVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V ++ T ++ + L L + NK V AG + L LT+P +V L
Sbjct: 176 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 235
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 236 LRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 293
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 294 GIEALVRTVLRAGDR 308
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 3 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 62
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 63 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 122
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 123 AVRLAGGLQKMVALLNK 139
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 363 LTSGSPED-QRSAAGEIRLLAKRNADNRVA---IAEAGAIPLLVGLLSTPDSRTQEHAVT 418
L +G ED A +R L R+ + +A + +P++V LL P A
Sbjct: 303 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 362
Query: 419 ALL-NLSICEDNKGSIVSSGAVPSIVHVL--------RIGSM--------------EARE 455
L+ NL++C N + GA+P +V +L R SM E E
Sbjct: 363 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 422
Query: 456 NAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505
L L+ N++ I IP V LL + ++ AA L L
Sbjct: 423 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 472
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 426 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 473
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 37/268 (13%)
Query: 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVH-VLRIGSME 452
G + LV LL + D A L NL+ C + NK + G + ++V VLR G E
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 453 -ARENAAATLFSLSV------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-N 504
E A L L+ + +N V + +P +V LL + A L N
Sbjct: 310 DITEPAICALRHLTSRHQEAEMAQNAVRL--HYGLPVVVKLLHPPSHWPLIKATVGLIRN 367
Query: 505 LCIYQGNKGKAVRAGVVPTLMHLL----------TEPGGG------------MVDEALAI 542
L + N G +P L+ LL T GG +V+
Sbjct: 368 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 427
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L IL+ + I +P+ V+++ + + AA VL L A D++ + G
Sbjct: 428 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEG 486
Query: 603 VMGPLVDLAQNGTDRGKRKAAQLLERMS 630
PL +L + + AA +L RMS
Sbjct: 487 ATAPLTELLHSRNEGVATYAAAVLFRMS 514
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 95 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 153
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 213
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 214 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 271
Query: 534 GMVDEALAILAILSSHPE 551
+ +A ++ LS P+
Sbjct: 272 ETLVDACWAISYLSDGPQ 289
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 401 LVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAA 459
LV LLS + Q A+ A+ N+ D + +V ++G +P++ +L ++ A
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363
Query: 460 TLFSLSVIDENKV-TIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504
T+ +++ + ++ + + IPPLV LL + KK+A A+ N
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 7 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 65
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLS-VIDENKVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 66 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 125
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 126 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 534 GMVDEALAILAILSSHPE 551
+ +A ++ LS P+
Sbjct: 184 ETLVDACWAISYLSDGPQ 201
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 401 LVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAA 459
LV LLS + Q A+ A+ N+ D + +V ++G +P++ +L ++ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 460 TLFSLSVIDENKV-TIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504
T+ +++ + ++ + + IPPLV LL + KK+A A+ N
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 7 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 65
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLS-VIDENKVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 66 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 125
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 126 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 534 GMVDEALAILAILSSHPE 551
+ +A ++ LS P+
Sbjct: 184 ETLVDACWAISYLSDGPQ 201
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 401 LVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAA 459
LV LLS + Q A+ A+ N+ D + +V ++G +P++ +L ++ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 460 TLFSLSVIDENKV-TIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504
T+ +++ + ++ + + IPPLV LL + KK+A A+ N
Sbjct: 276 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 133
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 134 AVRLAGGLQKMVALLNK 150
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 71 ETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 429 N-KGSIVSSGAVPSIVHVL 446
K ++ +G + +V +L
Sbjct: 130 GAKMAVRLAGGLQKMVALL 148
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLR-IGSMEAR 454
AIP L LL+ D A + LS E ++ +I+ S V +IV ++ +E
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
A TL +LS E + I SG IP LV +L A T L NL ++Q
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 133
Query: 515 AVR-AGVVPTLMHLLTE 530
AVR AG + ++ LL +
Sbjct: 134 AVRLAGGLQKMVALLNK 150
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + + +AI ++G IP LV +L +P +A+T L NL + ++
Sbjct: 71 ETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 429 N-KGSIVSSGAVPSIVHVL 446
K ++ +G + +V +L
Sbjct: 130 GAKMAVRLAGGLQKMVALL 148
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 264 CPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCP 300
C + LE +K+PVI+ G + ++CI +W E R P
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 58/322 (18%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 9 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 67
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 68 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 127
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 128 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 534 GMVDEALAILAILSSHPEGKAAIGAAEAVPV---LVEV---------------IGN---- 571
+ +A ++ LS P+ AI A V + LVE+ +GN
Sbjct: 186 ETLVDACWAISYLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 572 ---------------------GSPRN--RENAAAVLVHLCAGDQQYLAEAKELGVMGPLV 608
SP+ ++ A + ++ AG+ + + + ++ PLV
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
Query: 609 DLAQNGTDRGKRKAAQLLERMS 630
L + D+ K++A + S
Sbjct: 304 KLLEVAEDKTKKEACWAISNAS 325
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 58/322 (18%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 8 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 66
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 67 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 126
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 127 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 534 GMVDEALAILAILSSHPEGKAAIGAAEAVPV---LVEV---------------IGN---- 571
+ +A ++ LS P+ AI A V + LVE+ +GN
Sbjct: 185 ETLVDACWAISYLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 572 ---------------------GSPRN--RENAAAVLVHLCAGDQQYLAEAKELGVMGPLV 608
SP+ ++ A + ++ AG+ + + + ++ PLV
Sbjct: 243 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 302
Query: 609 DLAQNGTDRGKRKAAQLLERMS 630
L + D+ K++A + S
Sbjct: 303 KLLEVAEDKTKKEACWAISNAS 324
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLR 318
PD+FR P+ LM DPV + +G +RS I + L T P +Q LT + + P L+
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70
Query: 319 SLIAQW 324
I W
Sbjct: 71 EQIQAW 76
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 58/322 (18%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 9 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 67
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 68 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 127
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 128 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 534 GMVDEALAILAILSSHPEGKAAIGAAEAVPV---LVEV---------------IGN---- 571
+ +A ++ LS P+ AI A V + LVE+ +GN
Sbjct: 186 ETLVDACWAISYLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 572 ---------------------GSPRN--RENAAAVLVHLCAGDQQYLAEAKELGVMGPLV 608
SP+ ++ A + ++ AG+ + + + ++ PLV
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
Query: 609 DLAQNGTDRGKRKAAQLLERMS 630
L + D+ K++A + S
Sbjct: 304 KLLEVAEDKTKKEACWAISNAS 325
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 58/322 (18%)
Query: 362 KLTSGSPEDQRSAAGEIR-LLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVT 418
+L S ++Q SA + R +L++ + + +AG +P LV + + P+ Q A
Sbjct: 8 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE-MLQLEAAW 66
Query: 419 ALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGA 476
AL N+ S +V + AVP + +L GS+E +E A L +++ + + +
Sbjct: 67 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ 126
Query: 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK---AVRAGVVPTLMHLLTEPGG 533
A+ P++ L + + A L NLC +G K + +V + +PTL L+
Sbjct: 127 CNAMEPILGLFNSNKPSLIRTATWTLSNLC--RGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 534 GMVDEALAILAILSSHPEGKAAIGAAEAVPV---LVEV---------------IGN---- 571
+ +A ++ LS P+ AI A V + LVE+ +GN
Sbjct: 185 ETLVDACWAISYLSDGPQ--EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 572 ---------------------GSPRN--RENAAAVLVHLCAGDQQYLAEAKELGVMGPLV 608
SP+ ++ A + ++ AG+ + + + ++ PLV
Sbjct: 243 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 302
Query: 609 DLAQNGTDRGKRKAAQLLERMS 630
L + D+ K++A + S
Sbjct: 303 KLLEVAEDKTKKEACWAISNAS 324
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 12/255 (4%)
Query: 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
E R AG + L+ + +AI ++G IP LV L +P +A+T L NL + ++
Sbjct: 17 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQE 75
Query: 429 N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGASGAIPPL 483
K ++ +G + V +L +++ A T L ++ E+K+ I ASG L
Sbjct: 76 GAKXAVRLAGGLQKXVALLNKTNVKF---LAITTDCLQILAYGNQESKLIILASGGPQAL 132
Query: 484 VTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542
V + T ++ + L L + NK V AG L LT+P +V L
Sbjct: 133 VNIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWT 192
Query: 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602
L LS + G + LV+++G+ AA +L +L + + ++G
Sbjct: 193 LRNLSDAATKQE--GXEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVG 250
Query: 603 VMGPLVDLAQNGTDR 617
+ LV DR
Sbjct: 251 GIEALVRTVLRAGDR 265
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%)
Query: 451 MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510
+E A TL +LS E + I SG IP LV L A T L NL ++Q
Sbjct: 16 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQE 75
Query: 511 NKGKAVR 517
AVR
Sbjct: 76 GAKXAVR 82
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALL-NLSICEDNKGSIVSSGAVPSIVHVL--------R 447
+P++V LL P A L+ NL++C N + GA+P +V +L R
Sbjct: 298 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 357
Query: 448 IGSM--------------EARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQR 493
SM E E L L+ N++ I IP V LL +
Sbjct: 358 RTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 417
Query: 494 GKKDAATALFNL 505
++ AA L L
Sbjct: 418 IQRVAAGVLCEL 429
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424
G + +LA R+ NR+ I IPL V LL +P Q A L L+
Sbjct: 383 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 430
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 275 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 335 YT----------SGGTVEQIVYLVHCGIIEPLMN 358
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 45 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 103 ASPHAHISEQAVWALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 158
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 159 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 218
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 219 MVVKKGVVPQLVKL 232
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 340
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 341 YT----------SGGTVEQIVYLVHCGIIEPLMN 364
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 311 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 370
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 371 YT----------SGGTVEQIVYLVHCGIIEPLMN 394
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 81 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 138
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 139 ASPHAHISEQAVWALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 194
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 195 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 254
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 255 MVVKKGVVPQLVKL 268
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 274 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 333
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 334 YT----------SGGTVEQIVYLVHCGIIEPLMN 357
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 274 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 333
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 334 YT----------SGGTVEQIVYLVHCGIIEPLMN 357
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 275 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 335 YT----------SGGTVEQIVYLVHCGIIEPLMN 358
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 270 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 329
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 330 YT----------SGGTVEQIVYLVHCGIIEPLMN 353
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 40 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 98 ASPHAHISEQAVWALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 153
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 154 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 214 MVVKKGVVPQLVKL 227
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 270 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 329
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 330 YT----------SGGTVEQIVYLVHCGIIEPLMN 353
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 40 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 98 ASPHAHISEQAVWALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 153
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 154 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 213
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 214 MVVKKGVVPQLVKL 227
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 301 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 360
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 361 YT----------SGGTVEQIVYLVHCGIIEPLMN 384
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 71 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 128
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 129 ASPHAHISEQAVWALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 184
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 185 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 244
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 245 MVVKKGVVPQLVKL 258
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 385 YT----------SGGTVEQIVYLVHCGIIEPLMN 408
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 21/194 (10%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 95 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTEP-----GGGMVD 537
+ + A AL N+ G A R G + L+ LL P G +
Sbjct: 153 ASPHAHISEQAVWALGNIA----GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 208
Query: 538 EALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLA 596
L+ L + + A E + P LV ++ + P ++ + +L G + +
Sbjct: 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268
Query: 597 EAKELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 269 MVVKKGVVPQLVKL 282
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 275 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 335 YT----------SGGTVEQIVYLVHCGIIEPLMN 358
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 309 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 368
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 369 YT----------SGGTVEQIVYLVHCGIIEPLMN 392
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 385 YT----------SGGTVEQIVYLVHCGIIEPLMN 408
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 385 YT----------SGGTVEQIVYLVHCGIIEPLMN 408
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LVG+LS D +TQ+ A A+ N
Sbjct: 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 404 YT----------SGGTVEQIVYLVHCGIIEPLMN 427
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 432 SIVSSGAVPSIVHVLRIGSMEAR----ENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487
+I+ +G +P V L G + E+A A S E + GAIP ++LL
Sbjct: 114 NIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171
Query: 488 SEGTQRGKKDAATALFNLC-IYQGNKGKAVRAGVVPTLMHLLTEP-----GGGMVDEALA 541
+ + A AL N+ + ++ G + L+ LL P G +
Sbjct: 172 ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231
Query: 542 ILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE 600
L+ L + + A E + P LV ++ + P ++ + +L G + + +
Sbjct: 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291
Query: 601 LGVMGPLVDL 610
GV+ LV L
Sbjct: 292 KGVVPQLVKL 301
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 363 LTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422
LT+ Q+ A + + D + G +P LV +LS D +TQ+ AV A+ N
Sbjct: 276 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTN 335
Query: 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEAREN 456
+ S G V IV+++ G +E N
Sbjct: 336 YT----------SGGTVEQIVYLVHCGIIEPLMN 359
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 15/191 (7%)
Query: 432 SIVSSGAVPSIVHVL-RIGSMEARENAAATLFSL-SVIDENKVTIGASGAIPPLVTLLSE 489
+I+ +G +P V L R + +A L ++ S E + GAIP ++LL+
Sbjct: 46 NIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 105
Query: 490 GTQRGKKDAATALFNLCIYQGN----KGKAVRAGVVPTLMHLLTEP-----GGGMVDEAL 540
+ A AL N+ G+ + ++ G V L+ LL P G +
Sbjct: 106 PHAHISEQAVWALGNIA---GDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLT 162
Query: 541 AILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK 599
L+ L + I A E + P LV ++ + P + + +L G + +
Sbjct: 163 WTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVV 222
Query: 600 ELGVMGPLVDL 610
+ GV+ LV L
Sbjct: 223 KTGVVPQLVKL 233
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 258 IPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYV 316
+PD+F P+ +MKDPVI+ ++ +RS I+ L T P + L VTPN
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 960
Query: 317 LRSLI 321
LR I
Sbjct: 961 LRQKI 965
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 258 IPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYV 316
+PD+F P+ +MKDPVI+ ++ +RS I+ L T P + L VTPN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 946
Query: 317 LRSLI 321
LR I
Sbjct: 947 LRQKI 951
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWL-EAGHRTCPKTQQTLTSTAVTP- 313
P + + CPI L +++ V G + ++CI K + +AGH+ CP + L + P
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 71
Query: 314 NYVLRSLIA 322
N+ R +++
Sbjct: 72 NFAKREILS 80
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS-GAVPSIVHVLRIGS-MEAR 454
A+P L LL+ D A + LS E ++ +++ S V ++V ++ S ++
Sbjct: 20 ALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTA 79
Query: 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514
+ L +LS E + I SG IP LV +LS + A T L NL +YQ
Sbjct: 80 RCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKM 139
Query: 515 AVR 517
AVR
Sbjct: 140 AVR 142
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 114/313 (36%), Gaps = 73/313 (23%)
Query: 388 NRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS----------------------- 424
N+ AI EAG + L L++ R ++ + L NLS
Sbjct: 221 NKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVD 280
Query: 425 ---------------ICED--NKGSIVSSGAVPSIVH-VLRIGSM-EARENAAATLFSLS 465
C + NK + + V +++H +LR G + E A L L+
Sbjct: 281 DVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLT 340
Query: 466 V------IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALF-NLCIYQGNKGKAVRA 518
+ +N V + IP +V LL++ Q A L NL + N A
Sbjct: 341 SRHPEAEMAQNSVRLNY--GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEA 398
Query: 519 GVVPTLMHLLTEP--------GGG-------------MVDEALAILAILSSHPEGKAAIG 557
V+P L+ LL + G +V+ L IL+ P + I
Sbjct: 399 AVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIF 458
Query: 558 AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 617
+P+ V+++ + + AA VL L A D++ G PL++L + +
Sbjct: 459 RLNTIPLFVQLLYSSVENIQRVAAGVLCEL-AQDKEAADAIDAEGASAPLMELLHSRNEG 517
Query: 618 GKRKAAQLLERMS 630
AA +L R+S
Sbjct: 518 TATYAAAVLFRIS 530
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 376 GEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 435
G + +LA R+ NR+ I IPL V LL + Q A L L+ ++ +I +
Sbjct: 442 GALHILA-RDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDA 500
Query: 436 SGAVPSIVHVLRIGSMEARENAAATLFSLS 465
GA ++ +L + AAA LF +S
Sbjct: 501 EGASAPLMELLHSRNEGTATYAAAVLFRIS 530
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 390 VAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428
+AI ++G IP LV +LS+P +A+T L NL + ++
Sbjct: 97 LAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQE 135
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRT-----CPKTQQTLTSTAV 311
+I ++ CPI LEL+K+PV ++ R+CI E+ T CP + +
Sbjct: 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
Query: 312 TPN 314
PN
Sbjct: 75 KPN 77
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWL-EAGHRTCPKTQQTLTSTAVTP- 313
P + + CPI L +++ V G + ++CI K + +AGH+ CP + L + P
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 71
Query: 314 NYVLRSLIA 322
N+ R +++
Sbjct: 72 NFAKREILS 80
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 260 DDFRCPISLELMKDPVIVSTGQ-TYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLR 318
D+F PI LM DPV++ + + T +RS I + L +T P + LT + PN L+
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMDQIRPNTELK 79
Query: 319 SLIAQW 324
I +W
Sbjct: 80 EKIQRW 85
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWL-EAGHRTCPKTQQTLTSTAVTP- 313
P + + CPI L +++ V G + ++CI K + +AGH+ CP + L + P
Sbjct: 20 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 78
Query: 314 NYVLRSLI 321
N+ R ++
Sbjct: 79 NFAKREIL 86
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCI-----EKWLEAGHRTCPKTQQTLTSTAVT 312
+ ++ CPI LEL+ P+ + G ++ ++C+ + L+ G +CP + + +
Sbjct: 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
Query: 313 PN 314
PN
Sbjct: 76 PN 77
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 66/325 (20%)
Query: 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL----SIC 426
Q +A + +A N+ + +AGA+P+ + LLS+ QE AV AL N+ ++C
Sbjct: 79 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC 138
Query: 427 EDNKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT 485
D ++ +P ++ + + + NA +++LS + K + P +
Sbjct: 139 RD---YVLDCNILPPLLQLFSKQNRLTMTRNA---VWALSNLCRGKSPPPEFAKVSPCLN 192
Query: 486 LLSE----GTQRGKKDAATALFNLCIYQGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEAL 540
+LS DA AL L +K +AV AGV L+ LL +V AL
Sbjct: 193 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 252
Query: 541 ----------------------------------------AILAILSSHPEGKAAIGA-- 558
A I + +A I
Sbjct: 253 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 312
Query: 559 -AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ----QYLAEAKELGVMGPLVDLAQN 613
A P L+ ++ R R+ AA + + +G +YL ELG + PL DL
Sbjct: 313 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV---ELGCIKPLCDLLTV 369
Query: 614 GTDRGKRKAAQLLERMSRFIEQQKQ 638
+ + A LE + R EQ+ +
Sbjct: 370 MDSKIVQVALNGLENILRLGEQEAK 394
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 66/325 (20%)
Query: 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL----SIC 426
Q +A + +A N+ + +AGA+P+ + LLS+ QE AV AL N+ ++C
Sbjct: 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC 141
Query: 427 EDNKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT 485
D ++ +P ++ + + + NA +++LS + K + P +
Sbjct: 142 RD---YVLDCNILPPLLQLFSKQNRLTMTRNA---VWALSNLCRGKSPPPEFAKVSPCLN 195
Query: 486 LLSE----GTQRGKKDAATALFNLCIYQGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEAL 540
+LS DA AL L +K +AV AGV L+ LL +V AL
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255
Query: 541 ----------------------------------------AILAILSSHPEGKAAIGA-- 558
A I + +A I
Sbjct: 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315
Query: 559 -AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ----QYLAEAKELGVMGPLVDLAQN 613
A P L+ ++ R R+ AA + + +G +YL ELG + PL DL
Sbjct: 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV---ELGCIKPLCDLLTV 372
Query: 614 GTDRGKRKAAQLLERMSRFIEQQKQ 638
+ + A LE + R EQ+ +
Sbjct: 373 MDSKIVQVALNGLENILRLGEQEAK 397
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 258 IPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYV 316
+PD+F P+ + KDPVI+ ++ +RS I+ L T P + L VTPN
Sbjct: 902 VPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHL-LSDSTDPFNRXPLKLEDVTPNEE 960
Query: 317 LRSLI 321
LR I
Sbjct: 961 LRQKI 965
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLS 424
QR+ G +R L + DN++ +AE +P L+ +L T D T++ L NLS
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWL-EAGHRTCPKTQQTLTSTAVTPN 314
+ CPI L +++ V G + ++CI K + +AGH+ CP + L + P+
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 59
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 203 GDPG--ETIEKMSMLLKKIKDF---VQTENPNLDAPLKEKNPGPSQGGQASSDRNHKAPV 257
G PG E M L + KDF +Q +N L+ +EK +Q + S H V
Sbjct: 4 GSPGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLS---HMNDV 60
Query: 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308
+ ++ +C I E + V ++ ++ CI +W++ CP ++ + S
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 110
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWL--EAGHRTCPKTQQTLTSTAVTPNYVLRS 319
CPI LEL+K+PV + + C+ K L + G CP + +T ++ +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81
Query: 320 LIAQ 323
L+ +
Sbjct: 82 LVEE 85
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCI 288
+ ++ CPI LEL+ +P+ + G + R+CI
Sbjct: 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACI 39
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 208 TIEKMSMLLKKIKDFVQTENPNLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPIS 267
++E+++ K + +Q +N L+ +EK +Q + S H V+ ++ +C I
Sbjct: 3 SMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLS---HMNDVLENELQCIIC 59
Query: 268 LELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308
E + V ++ ++ CI +W++ CP ++ + S
Sbjct: 60 SEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 264 CPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKTQQTLTSTAV 311
CPI L++++ PV + G + CI + E G CP + ++ A+
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 208 TIEKMSMLLKKIKDFVQTENPNLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPIS 267
++E+++ K + +Q +N L+ +EK +Q + S H V+ ++ +C I
Sbjct: 3 SMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLS---HMNDVLENELQCIIC 59
Query: 268 LELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308
E + V ++ ++ CI +W++ CP ++ + S
Sbjct: 60 SEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,324,720
Number of Sequences: 62578
Number of extensions: 681096
Number of successful extensions: 1898
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1550
Number of HSP's gapped (non-prelim): 184
length of query: 661
length of database: 14,973,337
effective HSP length: 105
effective length of query: 556
effective length of database: 8,402,647
effective search space: 4671871732
effective search space used: 4671871732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)