Query 006099
Match_columns 661
No_of_seqs 458 out of 3284
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 18:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 3.1E-28 6.8E-33 256.9 24.9 296 354-649 109-412 (514)
2 PLN03200 cellulose synthase-in 100.0 1.9E-27 4.2E-32 284.6 31.4 282 352-633 11-314 (2102)
3 PLN03200 cellulose synthase-in 99.9 7.9E-26 1.7E-30 271.0 31.9 283 351-634 443-767 (2102)
4 KOG4224 Armadillo repeat prote 99.9 5.6E-27 1.2E-31 231.1 17.8 293 353-647 125-420 (550)
5 COG5064 SRP1 Karyopherin (impo 99.9 2.3E-26 4.9E-31 225.0 16.2 294 352-645 112-415 (526)
6 KOG4224 Armadillo repeat prote 99.9 1.5E-25 3.2E-30 221.1 21.2 281 353-635 166-450 (550)
7 KOG0166 Karyopherin (importin) 99.9 2.1E-23 4.5E-28 220.5 25.2 296 354-649 66-369 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.4E-23 2.9E-28 205.6 16.5 290 354-644 71-369 (526)
9 PF05804 KAP: Kinesin-associat 99.8 8.8E-18 1.9E-22 187.7 26.9 293 357-658 253-547 (708)
10 PF05804 KAP: Kinesin-associat 99.8 3.3E-17 7.1E-22 183.1 29.5 294 352-649 288-625 (708)
11 PF04564 U-box: U-box domain; 99.8 4.3E-19 9.3E-24 142.1 4.8 73 258-330 1-73 (73)
12 KOG1048 Neural adherens juncti 99.7 1.1E-14 2.4E-19 159.2 26.3 282 353-635 232-688 (717)
13 KOG4199 Uncharacterized conser 99.7 1.3E-14 2.8E-19 142.9 23.6 284 364-651 117-423 (461)
14 KOG2122 Beta-catenin-binding p 99.6 2.7E-14 5.8E-19 161.6 17.6 261 372-633 316-603 (2195)
15 KOG4199 Uncharacterized conser 99.6 4.5E-13 9.8E-18 132.2 24.1 277 354-631 145-444 (461)
16 PF04826 Arm_2: Armadillo-like 99.6 2.4E-13 5.1E-18 135.7 20.3 193 352-549 10-206 (254)
17 PF04826 Arm_2: Armadillo-like 99.6 2.5E-13 5.5E-18 135.5 19.3 193 393-589 9-205 (254)
18 KOG2122 Beta-catenin-binding p 99.5 9.8E-14 2.1E-18 157.1 17.6 303 353-655 234-583 (2195)
19 smart00504 Ubox Modified RING 99.5 8E-15 1.7E-19 114.6 5.1 63 261-324 1-63 (63)
20 KOG4642 Chaperone-dependent E3 99.5 4.1E-13 9E-18 127.0 12.6 228 58-331 45-281 (284)
21 PF10508 Proteasom_PSMB: Prote 99.4 2.5E-11 5.3E-16 134.6 26.8 278 353-631 76-366 (503)
22 PF10508 Proteasom_PSMB: Prote 99.3 1.2E-09 2.6E-14 121.2 27.6 297 352-649 117-438 (503)
23 KOG4500 Rho/Rac GTPase guanine 99.3 3.9E-10 8.4E-15 115.0 21.2 289 353-642 86-442 (604)
24 KOG1222 Kinesin associated pro 99.3 2.7E-09 5.8E-14 110.2 26.2 288 352-642 302-674 (791)
25 KOG1048 Neural adherens juncti 99.3 1.3E-10 2.7E-15 127.8 17.8 243 397-641 234-604 (717)
26 cd00020 ARM Armadillo/beta-cat 99.3 1.4E-10 3E-15 102.8 14.3 118 514-631 2-120 (120)
27 cd00020 ARM Armadillo/beta-cat 99.2 2.9E-10 6.3E-15 100.7 12.9 117 473-589 2-120 (120)
28 PRK09687 putative lyase; Provi 99.2 1.6E-09 3.5E-14 110.6 18.5 226 354-630 23-249 (280)
29 PRK09687 putative lyase; Provi 99.2 1.8E-09 4E-14 110.2 18.7 224 353-627 53-278 (280)
30 KOG1222 Kinesin associated pro 99.2 2.9E-09 6.4E-14 109.9 19.9 267 356-631 262-534 (791)
31 cd00256 VATPase_H VATPase_H, r 99.1 9.1E-09 2E-13 109.4 21.8 274 356-629 103-423 (429)
32 PLN03208 E3 ubiquitin-protein 99.1 1E-10 2.2E-15 108.9 4.5 62 256-317 13-89 (193)
33 PF15227 zf-C3HC4_4: zinc fing 99.1 8.4E-11 1.8E-15 82.7 2.8 39 264-302 1-42 (42)
34 KOG0168 Putative ubiquitin fus 99.0 1.1E-08 2.4E-13 112.2 19.2 258 353-614 166-438 (1051)
35 TIGR00599 rad18 DNA repair pro 99.0 5.2E-10 1.1E-14 117.0 5.9 71 256-327 21-91 (397)
36 KOG4500 Rho/Rac GTPase guanine 99.0 8.7E-08 1.9E-12 98.2 20.9 220 410-629 238-473 (604)
37 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.1E-08 2.5E-13 106.8 15.2 229 397-625 56-308 (312)
38 KOG0946 ER-Golgi vesicle-tethe 98.9 5.6E-07 1.2E-11 98.5 26.1 289 352-644 20-359 (970)
39 PRK13800 putative oxidoreducta 98.9 1.7E-07 3.6E-12 111.6 24.1 230 352-629 619-865 (897)
40 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.2E-08 9.2E-13 102.5 15.9 223 356-579 60-304 (312)
41 PRK13800 putative oxidoreducta 98.8 9.1E-07 2E-11 105.3 25.1 229 353-628 651-896 (897)
42 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.5E-09 9.7E-14 73.1 2.8 38 264-302 1-39 (39)
43 KOG0287 Postreplication repair 98.7 3.2E-09 7E-14 104.5 2.1 68 258-326 20-87 (442)
44 KOG2160 Armadillo/beta-catenin 98.7 1.1E-06 2.5E-11 89.4 19.6 183 365-548 94-282 (342)
45 KOG3678 SARM protein (with ste 98.7 7.3E-07 1.6E-11 92.2 18.2 288 352-655 178-505 (832)
46 KOG2759 Vacuolar H+-ATPase V1 98.7 1.4E-06 3.1E-11 89.7 20.2 274 356-630 116-437 (442)
47 KOG0823 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 97.2 2.8 59 259-317 45-105 (230)
48 PF13445 zf-RING_UBOX: RING-ty 98.6 1.6E-08 3.5E-13 71.0 2.4 36 264-300 1-43 (43)
49 KOG2160 Armadillo/beta-catenin 98.6 4.2E-06 9.2E-11 85.3 19.6 180 450-629 96-280 (342)
50 PF01602 Adaptin_N: Adaptin N 98.6 2.1E-06 4.6E-11 96.8 18.6 255 354-632 79-334 (526)
51 PF00097 zf-C3HC4: Zinc finger 98.6 5.2E-08 1.1E-12 68.6 3.2 39 264-302 1-41 (41)
52 cd00256 VATPase_H VATPase_H, r 98.5 2.4E-05 5.2E-10 83.6 23.5 287 354-641 53-393 (429)
53 PHA02929 N1R/p28-like protein; 98.5 1E-07 2.3E-12 93.1 4.4 48 259-307 172-227 (238)
54 PF01602 Adaptin_N: Adaptin N 98.5 5.4E-06 1.2E-10 93.5 18.8 255 354-633 114-371 (526)
55 KOG0317 Predicted E3 ubiquitin 98.5 8.7E-08 1.9E-12 93.6 3.6 54 257-311 235-288 (293)
56 PF13920 zf-C3HC4_3: Zinc fing 98.5 9.3E-08 2E-12 70.5 2.9 47 260-307 1-48 (50)
57 COG5432 RAD18 RING-finger-cont 98.5 7.5E-08 1.6E-12 93.0 2.7 67 259-326 23-89 (391)
58 KOG0320 Predicted E3 ubiquitin 98.5 1E-07 2.3E-12 86.2 3.3 53 260-313 130-184 (187)
59 KOG4646 Uncharacterized conser 98.5 1.2E-06 2.5E-11 76.3 9.5 149 437-585 16-166 (173)
60 PF11789 zf-Nse: Zinc-finger o 98.4 9.1E-08 2E-12 71.9 1.4 44 260-303 10-55 (57)
61 PF14835 zf-RING_6: zf-RING of 98.4 7.3E-08 1.6E-12 72.2 0.8 59 260-321 6-65 (65)
62 KOG0168 Putative ubiquitin fus 98.4 2.2E-05 4.9E-10 86.9 19.0 244 398-645 169-427 (1051)
63 PF13639 zf-RING_2: Ring finge 98.4 1.5E-07 3.4E-12 67.3 1.5 40 263-303 2-44 (44)
64 KOG4646 Uncharacterized conser 98.3 2.3E-06 5E-11 74.5 8.8 153 475-627 13-166 (173)
65 KOG2973 Uncharacterized conser 98.3 8.6E-05 1.9E-09 73.8 20.4 269 356-631 5-315 (353)
66 cd00162 RING RING-finger (Real 98.3 7.1E-07 1.5E-11 63.9 4.0 43 263-305 1-44 (45)
67 KOG1293 Proteins containing ar 98.3 4.3E-05 9.2E-10 83.0 17.8 227 365-591 388-629 (678)
68 KOG0946 ER-Golgi vesicle-tethe 98.2 0.00038 8.3E-09 77.0 25.0 287 354-640 61-409 (970)
69 PTZ00429 beta-adaptin; Provisi 98.2 0.00022 4.7E-09 82.0 24.1 259 354-632 68-327 (746)
70 KOG2171 Karyopherin (importin) 98.2 0.00017 3.7E-09 83.2 22.7 277 355-633 160-506 (1075)
71 smart00184 RING Ring finger. E 98.2 1.8E-06 3.8E-11 59.6 3.6 39 264-302 1-39 (39)
72 KOG1293 Proteins containing ar 98.2 0.00012 2.6E-09 79.6 19.1 152 449-600 389-544 (678)
73 PHA02926 zinc finger-like prot 98.2 1.3E-06 2.8E-11 82.2 3.8 50 258-307 167-230 (242)
74 KOG2177 Predicted E3 ubiquitin 98.1 1.6E-06 3.5E-11 91.2 3.3 70 257-329 9-78 (386)
75 KOG2023 Nuclear transport rece 98.1 4.9E-05 1.1E-09 82.3 14.1 270 354-633 128-465 (885)
76 KOG0978 E3 ubiquitin ligase in 98.1 5.6E-05 1.2E-09 84.0 14.9 55 260-314 642-696 (698)
77 KOG2171 Karyopherin (importin) 98.1 8.9E-05 1.9E-09 85.4 16.8 233 354-589 348-594 (1075)
78 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0002 4.4E-09 74.2 17.2 234 356-590 158-439 (442)
79 PTZ00429 beta-adaptin; Provisi 98.1 0.00094 2E-08 76.9 24.4 255 353-632 31-286 (746)
80 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0011 2.4E-08 70.5 23.2 274 355-632 26-365 (371)
81 PF05536 Neurochondrin: Neuroc 98.0 0.0002 4.3E-09 80.0 18.4 234 398-632 7-262 (543)
82 PF05536 Neurochondrin: Neuroc 98.0 0.00027 5.9E-09 79.0 19.1 234 353-587 4-259 (543)
83 TIGR02270 conserved hypothetic 98.0 0.0005 1.1E-08 73.9 19.7 58 561-633 241-298 (410)
84 KOG2164 Predicted E3 ubiquitin 98.0 4.1E-06 9E-11 88.3 3.2 69 261-329 186-262 (513)
85 PF14634 zf-RING_5: zinc-RING 97.9 6.7E-06 1.4E-10 58.7 3.0 41 263-304 1-44 (44)
86 KOG0311 Predicted E3 ubiquitin 97.9 1.8E-06 3.9E-11 86.5 -0.0 69 257-325 39-109 (381)
87 TIGR00570 cdk7 CDK-activating 97.9 9.7E-06 2.1E-10 81.7 5.1 52 260-311 2-58 (309)
88 COG5574 PEX10 RING-finger-cont 97.9 5.4E-06 1.2E-10 80.2 3.2 51 259-309 213-264 (271)
89 KOG2973 Uncharacterized conser 97.9 0.00071 1.5E-08 67.5 17.7 246 399-649 6-290 (353)
90 KOG2734 Uncharacterized conser 97.9 0.002 4.3E-08 67.2 21.1 238 373-612 103-371 (536)
91 PF00514 Arm: Armadillo/beta-c 97.9 1.7E-05 3.8E-10 55.6 4.2 40 385-424 1-40 (41)
92 KOG1517 Guanine nucleotide bin 97.9 0.00029 6.3E-09 79.9 15.5 228 372-599 485-742 (1387)
93 KOG4413 26S proteasome regulat 97.8 0.0017 3.7E-08 65.1 17.9 295 352-647 126-455 (524)
94 PF12348 CLASP_N: CLASP N term 97.8 0.00019 4E-09 71.5 11.6 191 447-641 17-216 (228)
95 PF12678 zf-rbx1: RING-H2 zinc 97.8 2.7E-05 5.8E-10 62.2 3.7 39 264-303 22-73 (73)
96 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0018 4E-08 68.8 18.3 253 377-632 6-270 (371)
97 KOG2042 Ubiquitin fusion degra 97.7 4.4E-05 9.4E-10 87.3 5.9 72 256-328 865-937 (943)
98 KOG3678 SARM protein (with ste 97.7 0.002 4.4E-08 67.4 17.3 183 389-573 173-361 (832)
99 PF00514 Arm: Armadillo/beta-c 97.7 7.5E-05 1.6E-09 52.4 4.7 41 549-589 1-41 (41)
100 KOG0212 Uncharacterized conser 97.7 0.00092 2E-08 71.6 14.6 233 354-589 208-444 (675)
101 COG5222 Uncharacterized conser 97.7 5.3E-05 1.1E-09 73.9 4.8 72 255-328 270-343 (427)
102 KOG2660 Locus-specific chromos 97.6 2.3E-05 4.9E-10 78.5 2.3 65 256-321 10-79 (331)
103 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.00087 1.9E-08 67.0 12.7 227 404-630 157-427 (432)
104 COG1413 FOG: HEAT repeat [Ener 97.6 0.0063 1.4E-07 64.4 20.2 188 354-590 43-243 (335)
105 COG5369 Uncharacterized conser 97.6 0.00043 9.2E-09 73.5 10.5 262 369-630 404-740 (743)
106 KOG1789 Endocytosis protein RM 97.5 0.013 2.8E-07 67.0 22.0 242 370-613 1741-2141(2235)
107 KOG4159 Predicted E3 ubiquitin 97.5 5.6E-05 1.2E-09 79.7 3.5 72 255-327 78-154 (398)
108 PF10165 Ric8: Guanine nucleot 97.5 0.0063 1.4E-07 66.7 19.1 257 374-633 1-339 (446)
109 PF12348 CLASP_N: CLASP N term 97.5 0.00091 2E-08 66.5 11.6 183 363-549 16-207 (228)
110 KOG2023 Nuclear transport rece 97.5 0.0019 4.2E-08 70.4 14.4 172 396-568 128-307 (885)
111 PF10165 Ric8: Guanine nucleot 97.5 0.0027 6E-08 69.5 16.0 238 365-602 43-350 (446)
112 KOG0297 TNF receptor-associate 97.5 6.9E-05 1.5E-09 80.2 3.4 67 257-324 17-85 (391)
113 KOG4413 26S proteasome regulat 97.5 0.014 3.1E-07 58.7 19.1 248 367-614 184-464 (524)
114 KOG0212 Uncharacterized conser 97.4 0.0041 8.9E-08 66.8 15.6 235 396-633 167-408 (675)
115 COG5113 UFD2 Ubiquitin fusion 97.4 0.00031 6.7E-09 75.5 7.3 73 255-328 848-921 (929)
116 PF13646 HEAT_2: HEAT repeats; 97.4 0.00059 1.3E-08 56.6 7.3 86 398-503 1-88 (88)
117 TIGR02270 conserved hypothetic 97.4 0.012 2.5E-07 63.5 18.5 180 398-631 88-267 (410)
118 PF13646 HEAT_2: HEAT repeats; 97.3 0.00092 2E-08 55.4 7.6 86 356-462 1-88 (88)
119 COG5152 Uncharacterized conser 97.3 0.00011 2.5E-09 67.4 1.7 48 256-306 193-240 (259)
120 KOG4628 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 74.1 2.6 47 262-308 230-279 (348)
121 PF12861 zf-Apc11: Anaphase-pr 97.2 0.00033 7.2E-09 56.4 3.6 45 263-307 34-82 (85)
122 KOG1813 Predicted E3 ubiquitin 97.2 0.00014 3E-09 71.6 1.4 49 256-307 238-286 (313)
123 KOG2734 Uncharacterized conser 97.2 0.076 1.7E-06 55.8 21.1 237 353-590 124-401 (536)
124 KOG1059 Vesicle coat complex A 97.2 0.047 1E-06 60.5 20.5 254 353-628 180-440 (877)
125 COG1413 FOG: HEAT repeat [Ener 97.1 0.016 3.5E-07 61.2 16.5 186 396-630 43-241 (335)
126 smart00185 ARM Armadillo/beta- 97.1 0.0011 2.4E-08 46.1 5.0 40 386-425 2-41 (41)
127 KOG1242 Protein containing ada 97.1 0.017 3.6E-07 63.3 16.1 244 354-614 216-465 (569)
128 KOG0824 Predicted E3 ubiquitin 97.1 0.00023 5.1E-09 70.2 1.9 49 263-311 9-57 (324)
129 KOG1517 Guanine nucleotide bin 97.1 0.048 1E-06 62.8 19.6 207 435-641 510-742 (1387)
130 KOG2259 Uncharacterized conser 97.0 0.005 1.1E-07 67.3 11.3 218 355-587 199-473 (823)
131 KOG1241 Karyopherin (importin) 97.0 0.043 9.4E-07 61.2 18.6 269 354-634 129-438 (859)
132 KOG1242 Protein containing ada 97.0 0.074 1.6E-06 58.4 19.8 271 353-633 133-446 (569)
133 KOG2879 Predicted E3 ubiquitin 96.8 0.00098 2.1E-08 65.0 3.8 49 259-307 237-287 (298)
134 KOG1241 Karyopherin (importin) 96.8 0.074 1.6E-06 59.5 18.2 275 354-635 364-672 (859)
135 COG5231 VMA13 Vacuolar H+-ATPa 96.8 0.054 1.2E-06 54.6 15.6 224 364-588 159-427 (432)
136 KOG0802 E3 ubiquitin ligase [P 96.8 0.00051 1.1E-08 77.2 1.8 47 259-306 289-340 (543)
137 COG5540 RING-finger-containing 96.8 0.00076 1.6E-08 66.4 2.6 47 262-308 324-373 (374)
138 PF11841 DUF3361: Domain of un 96.8 0.037 8E-07 50.8 13.1 139 513-651 5-152 (160)
139 COG5243 HRD1 HRD ubiquitin lig 96.7 0.0011 2.4E-08 67.0 3.4 48 259-307 285-345 (491)
140 KOG0213 Splicing factor 3b, su 96.7 0.079 1.7E-06 58.9 17.2 232 354-591 799-1067(1172)
141 PF05659 RPW8: Arabidopsis bro 96.7 0.027 5.9E-07 51.5 11.9 93 24-117 27-120 (147)
142 PF11841 DUF3361: Domain of un 96.7 0.029 6.2E-07 51.5 11.8 121 472-592 5-134 (160)
143 KOG1789 Endocytosis protein RM 96.7 0.078 1.7E-06 61.0 17.1 215 354-571 1771-2141(2235)
144 COG5369 Uncharacterized conser 96.6 0.008 1.7E-07 64.2 8.8 196 416-611 409-617 (743)
145 smart00185 ARM Armadillo/beta- 96.6 0.0052 1.1E-07 42.6 5.3 40 550-589 2-41 (41)
146 COG5181 HSH155 U2 snRNP splice 96.6 0.1 2.2E-06 56.9 16.8 233 353-591 603-872 (975)
147 KOG2259 Uncharacterized conser 96.6 0.012 2.6E-07 64.4 10.0 214 401-629 203-473 (823)
148 KOG0213 Splicing factor 3b, su 96.6 0.034 7.4E-07 61.7 13.4 151 480-632 801-955 (1172)
149 KOG1002 Nucleotide excision re 96.5 0.0012 2.6E-08 69.6 1.8 52 259-310 534-589 (791)
150 KOG3036 Protein involved in ce 96.5 0.098 2.1E-06 50.9 14.5 175 414-589 97-291 (293)
151 KOG1059 Vesicle coat complex A 96.5 0.26 5.7E-06 54.9 19.3 220 352-591 142-367 (877)
152 COG5240 SEC21 Vesicle coat com 96.4 0.12 2.7E-06 55.9 15.8 58 572-632 499-556 (898)
153 PF04063 DUF383: Domain of unk 96.3 0.022 4.8E-07 54.6 9.3 123 491-613 8-158 (192)
154 KOG0804 Cytoplasmic Zn-finger 96.3 0.0022 4.8E-08 66.7 2.7 48 257-307 171-222 (493)
155 KOG1248 Uncharacterized conser 96.3 0.16 3.4E-06 59.7 17.4 237 406-651 664-919 (1176)
156 KOG1062 Vesicle coat complex A 96.3 0.14 3.1E-06 57.6 16.1 249 354-623 179-462 (866)
157 PF09759 Atx10homo_assoc: Spin 96.2 0.024 5.2E-07 48.1 8.0 67 535-601 2-71 (102)
158 KOG0289 mRNA splicing factor [ 96.2 0.017 3.6E-07 60.1 8.2 51 262-313 1-52 (506)
159 COG5096 Vesicle coat complex, 96.2 0.78 1.7E-05 52.6 22.2 142 354-508 55-196 (757)
160 KOG1061 Vesicle coat complex A 96.2 0.07 1.5E-06 59.9 13.4 244 354-615 49-293 (734)
161 KOG1824 TATA-binding protein-i 96.2 0.14 3E-06 58.6 15.7 237 351-595 44-292 (1233)
162 KOG1077 Vesicle coat complex A 96.2 0.19 4.1E-06 55.8 16.2 264 353-633 110-400 (938)
163 PF09759 Atx10homo_assoc: Spin 96.1 0.036 7.7E-07 47.1 8.3 70 577-646 3-74 (102)
164 PF13513 HEAT_EZ: HEAT-like re 96.1 0.0087 1.9E-07 44.8 4.2 55 451-505 1-55 (55)
165 COG5215 KAP95 Karyopherin (imp 96.1 0.36 7.8E-06 52.4 17.4 268 354-633 133-439 (858)
166 KOG1824 TATA-binding protein-i 96.1 0.12 2.6E-06 59.1 14.4 269 358-634 9-289 (1233)
167 KOG1062 Vesicle coat complex A 96.0 0.56 1.2E-05 53.1 19.3 244 354-638 142-422 (866)
168 KOG0826 Predicted E3 ubiquitin 96.0 0.0057 1.2E-07 61.3 3.6 53 254-307 293-346 (357)
169 PF13513 HEAT_EZ: HEAT-like re 96.0 0.014 2.9E-07 43.7 4.8 55 574-629 1-55 (55)
170 COG5181 HSH155 U2 snRNP splice 95.9 0.038 8.2E-07 60.1 9.3 219 397-633 605-831 (975)
171 KOG3036 Protein involved in ce 95.9 0.29 6.2E-06 47.8 14.2 140 494-633 95-249 (293)
172 KOG4151 Myosin assembly protei 95.8 0.16 3.6E-06 57.3 14.4 217 426-647 493-715 (748)
173 KOG4367 Predicted Zn-finger pr 95.8 0.0033 7.2E-08 64.7 1.1 35 259-293 2-36 (699)
174 COG5096 Vesicle coat complex, 95.7 0.24 5.3E-06 56.6 15.3 168 363-549 28-196 (757)
175 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.014 3E-07 59.2 4.8 54 258-313 110-167 (260)
176 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.049 1.1E-06 47.5 7.4 71 353-423 42-113 (119)
177 KOG1061 Vesicle coat complex A 95.6 0.28 6E-06 55.3 14.7 231 313-572 61-292 (734)
178 KOG1060 Vesicle coat complex A 95.4 1 2.2E-05 51.0 18.0 255 354-633 35-318 (968)
179 PF13764 E3_UbLigase_R4: E3 ub 95.2 2.2 4.8E-05 49.8 21.1 239 391-631 112-406 (802)
180 KOG3039 Uncharacterized conser 95.2 0.016 3.5E-07 55.6 3.2 53 260-313 220-276 (303)
181 PF05004 IFRD: Interferon-rela 95.2 0.75 1.6E-05 47.9 15.8 190 441-634 47-260 (309)
182 PF08569 Mo25: Mo25-like; Int 95.1 0.24 5.2E-06 51.9 11.9 196 354-551 76-286 (335)
183 PF04078 Rcd1: Cell differenti 95.0 0.99 2.1E-05 45.0 15.1 181 450-631 8-218 (262)
184 PF04063 DUF383: Domain of unk 94.9 0.088 1.9E-06 50.5 7.3 109 409-517 8-142 (192)
185 PF04078 Rcd1: Cell differenti 94.8 0.97 2.1E-05 45.0 14.4 143 491-633 8-170 (262)
186 KOG1240 Protein kinase contain 94.8 1.4 3E-05 52.3 17.6 266 357-631 425-725 (1431)
187 KOG0828 Predicted E3 ubiquitin 94.8 0.016 3.4E-07 61.1 2.1 51 258-308 568-635 (636)
188 KOG2817 Predicted E3 ubiquitin 94.8 0.021 4.5E-07 59.2 2.9 44 261-304 334-382 (394)
189 KOG1077 Vesicle coat complex A 94.6 1.8 3.9E-05 48.5 17.0 256 361-631 153-433 (938)
190 KOG1734 Predicted RING-contain 94.4 0.0087 1.9E-07 58.2 -0.6 54 260-313 223-287 (328)
191 PF12755 Vac14_Fab1_bd: Vacuol 94.3 0.2 4.3E-06 42.4 7.4 70 560-630 27-96 (97)
192 KOG2999 Regulator of Rac1, req 94.2 0.8 1.7E-05 49.7 13.2 162 438-599 84-253 (713)
193 KOG4172 Predicted E3 ubiquitin 94.2 0.012 2.7E-07 42.4 -0.2 45 263-307 9-54 (62)
194 KOG2979 Protein involved in DN 94.1 0.037 8E-07 54.0 2.8 45 261-305 176-222 (262)
195 KOG0567 HEAT repeat-containing 94.1 4.4 9.5E-05 40.4 17.0 195 395-630 66-279 (289)
196 KOG3039 Uncharacterized conser 94.1 0.033 7.2E-07 53.5 2.5 37 257-293 39-75 (303)
197 smart00744 RINGv The RING-vari 94.0 0.061 1.3E-06 39.1 3.3 41 263-303 1-49 (49)
198 PF12717 Cnd1: non-SMC mitotic 94.0 1.5 3.3E-05 41.6 13.8 92 367-467 1-93 (178)
199 KOG1039 Predicted E3 ubiquitin 94.0 0.037 8.1E-07 57.5 2.8 50 258-307 158-221 (344)
200 KOG1645 RING-finger-containing 94.0 0.029 6.4E-07 57.9 2.0 59 262-320 5-69 (463)
201 PF06371 Drf_GBD: Diaphanous G 93.9 0.31 6.7E-06 46.6 9.0 77 513-589 101-187 (187)
202 KOG2999 Regulator of Rac1, req 93.9 1.1 2.5E-05 48.6 13.5 175 478-652 83-264 (713)
203 PF05004 IFRD: Interferon-rela 93.7 2.3 4.9E-05 44.3 15.4 190 355-546 44-255 (309)
204 KOG1078 Vesicle coat complex C 93.6 2.9 6.2E-05 47.5 16.5 260 354-632 245-533 (865)
205 KOG4151 Myosin assembly protei 93.4 1.8 3.9E-05 49.3 14.8 237 385-626 493-736 (748)
206 KOG1240 Protein kinase contain 93.4 0.75 1.6E-05 54.3 12.0 231 354-590 462-726 (1431)
207 KOG1785 Tyrosine kinase negati 93.2 0.037 7.9E-07 56.8 1.2 48 263-310 371-419 (563)
208 PF12719 Cnd3: Nuclear condens 93.2 0.99 2.1E-05 46.8 11.8 169 396-571 26-208 (298)
209 PF11793 FANCL_C: FANCL C-term 93.1 0.033 7.1E-07 44.0 0.5 47 261-307 2-66 (70)
210 PF08569 Mo25: Mo25-like; Int 92.8 3.6 7.9E-05 43.2 15.3 158 473-630 71-237 (335)
211 COG5194 APC11 Component of SCF 92.7 0.11 2.3E-06 41.0 2.8 44 263-307 33-81 (88)
212 KOG3800 Predicted E3 ubiquitin 92.7 0.088 1.9E-06 52.3 3.0 49 263-311 2-55 (300)
213 PF11701 UNC45-central: Myosin 92.7 0.3 6.6E-06 45.4 6.4 146 437-586 3-156 (157)
214 PF12755 Vac14_Fab1_bd: Vacuol 92.6 0.48 1E-05 40.1 7.0 90 495-587 3-94 (97)
215 PF08045 CDC14: Cell division 92.6 0.91 2E-05 45.4 10.0 95 371-465 108-207 (257)
216 PF12719 Cnd3: Nuclear condens 92.6 2.8 6.1E-05 43.5 14.2 169 354-530 26-208 (298)
217 KOG1493 Anaphase-promoting com 92.5 0.052 1.1E-06 42.3 0.9 46 262-307 32-81 (84)
218 PF05918 API5: Apoptosis inhib 92.5 2.8 6E-05 46.7 14.5 132 354-503 23-158 (556)
219 PF12717 Cnd1: non-SMC mitotic 92.4 3.9 8.4E-05 38.8 13.8 92 409-508 1-93 (178)
220 KOG2611 Neurochondrin/leucine- 92.4 10 0.00023 40.8 17.6 186 401-590 16-226 (698)
221 KOG2611 Neurochondrin/leucine- 92.3 6.4 0.00014 42.4 16.0 145 442-588 16-181 (698)
222 PF07814 WAPL: Wings apart-lik 92.2 2.4 5.2E-05 45.2 13.4 270 353-634 20-358 (361)
223 KOG2274 Predicted importin 9 [ 92.2 1.8 3.9E-05 49.8 12.6 179 450-634 504-692 (1005)
224 COG5219 Uncharacterized conser 92.1 0.063 1.4E-06 60.9 1.3 47 261-307 1469-1523(1525)
225 PF14668 RICTOR_V: Rapamycin-i 92.1 0.55 1.2E-05 37.3 6.2 66 495-560 4-70 (73)
226 COG5175 MOT2 Transcriptional r 92.0 0.1 2.2E-06 52.5 2.5 50 260-310 14-67 (480)
227 PF12460 MMS19_C: RNAPII trans 91.9 2 4.4E-05 46.8 12.8 187 354-550 189-396 (415)
228 KOG0825 PHD Zn-finger protein 91.9 0.039 8.5E-07 61.3 -0.6 48 261-309 123-173 (1134)
229 PF06371 Drf_GBD: Diaphanous G 91.7 1.3 2.8E-05 42.3 9.9 111 353-465 65-186 (187)
230 KOG4653 Uncharacterized conser 91.7 2 4.4E-05 49.1 12.3 215 408-631 739-964 (982)
231 PF02891 zf-MIZ: MIZ/SP-RING z 91.7 0.19 4E-06 36.8 2.9 44 262-305 3-50 (50)
232 KOG0567 HEAT repeat-containing 91.6 13 0.00028 37.1 16.3 226 356-633 5-251 (289)
233 COG5215 KAP95 Karyopherin (imp 91.5 15 0.00032 40.6 17.9 275 355-633 367-670 (858)
234 KOG1058 Vesicle coat complex C 91.5 5.5 0.00012 45.2 15.1 136 438-592 318-466 (948)
235 KOG0211 Protein phosphatase 2A 91.5 3.8 8.2E-05 47.6 14.6 268 355-630 237-507 (759)
236 PF08045 CDC14: Cell division 91.3 2.3 5E-05 42.6 11.2 95 535-629 107-205 (257)
237 KOG1943 Beta-tubulin folding c 91.2 12 0.00025 44.4 17.9 242 354-621 341-601 (1133)
238 PF14570 zf-RING_4: RING/Ubox 91.2 0.16 3.5E-06 36.4 2.1 43 264-306 1-47 (48)
239 PF12031 DUF3518: Domain of un 91.1 0.78 1.7E-05 44.9 7.4 85 534-618 139-232 (257)
240 KOG4692 Predicted E3 ubiquitin 91.1 0.13 2.9E-06 52.0 2.2 48 259-307 420-467 (489)
241 KOG0915 Uncharacterized conser 91.0 7.5 0.00016 47.6 16.4 215 354-574 956-1186(1702)
242 KOG1248 Uncharacterized conser 90.9 4.6 0.0001 48.1 14.5 221 365-590 665-899 (1176)
243 KOG1058 Vesicle coat complex C 90.5 6.4 0.00014 44.7 14.5 31 520-550 318-348 (948)
244 PF02985 HEAT: HEAT repeat; I 90.5 0.54 1.2E-05 30.4 4.0 29 562-590 2-30 (31)
245 PF14447 Prok-RING_4: Prokaryo 90.5 0.14 3.1E-06 37.6 1.3 46 261-309 7-52 (55)
246 PF13764 E3_UbLigase_R4: E3 ub 90.3 7.4 0.00016 45.6 15.7 206 433-641 113-374 (802)
247 PF02985 HEAT: HEAT repeat; I 90.3 0.35 7.6E-06 31.3 3.0 28 398-425 2-29 (31)
248 PF11698 V-ATPase_H_C: V-ATPas 90.3 0.55 1.2E-05 41.0 5.0 70 561-630 44-114 (119)
249 COG5209 RCD1 Uncharacterized p 90.2 5.3 0.00011 38.7 11.8 144 414-557 118-277 (315)
250 PF06025 DUF913: Domain of Unk 90.0 12 0.00026 40.1 16.0 209 373-600 3-243 (379)
251 KOG3113 Uncharacterized conser 90.0 0.36 7.9E-06 46.9 4.0 52 259-313 109-164 (293)
252 KOG0915 Uncharacterized conser 89.9 10 0.00022 46.5 16.4 226 355-592 819-1071(1702)
253 KOG1571 Predicted E3 ubiquitin 89.9 0.4 8.7E-06 49.4 4.5 49 255-307 299-347 (355)
254 KOG1001 Helicase-like transcri 89.5 0.091 2E-06 60.0 -0.5 48 262-310 455-503 (674)
255 KOG0301 Phospholipase A2-activ 89.5 5.9 0.00013 44.3 13.1 164 360-530 550-727 (745)
256 COG5240 SEC21 Vesicle coat com 89.4 14 0.00031 40.7 15.6 226 358-588 268-554 (898)
257 PF14500 MMS19_N: Dos2-interac 89.4 11 0.00023 38.3 14.4 211 359-590 4-238 (262)
258 KOG2956 CLIP-associating prote 89.3 12 0.00027 40.3 14.8 187 354-547 286-476 (516)
259 KOG4265 Predicted E3 ubiquitin 89.1 0.23 5.1E-06 51.0 2.2 46 261-307 290-336 (349)
260 KOG2274 Predicted importin 9 [ 88.9 20 0.00043 41.8 17.1 224 367-598 463-698 (1005)
261 PF08324 PUL: PUL domain; Int 88.9 2.9 6.4E-05 42.5 10.2 184 398-581 65-266 (268)
262 PF06025 DUF913: Domain of Unk 88.7 16 0.00035 39.1 15.9 95 395-489 105-207 (379)
263 KOG0827 Predicted E3 ubiquitin 88.6 0.27 5.9E-06 50.6 2.2 49 261-309 4-58 (465)
264 KOG4653 Uncharacterized conser 88.1 9.9 0.00021 43.9 14.0 183 352-547 725-917 (982)
265 KOG0211 Protein phosphatase 2A 88.0 12 0.00026 43.6 15.0 264 356-631 357-625 (759)
266 KOG1820 Microtubule-associated 87.9 6.5 0.00014 46.1 13.0 184 357-547 256-442 (815)
267 KOG2114 Vacuolar assembly/sort 87.7 0.28 6E-06 55.7 1.7 43 258-304 837-880 (933)
268 KOG1566 Conserved protein Mo25 87.7 12 0.00027 38.2 13.1 198 353-551 78-289 (342)
269 PF12460 MMS19_C: RNAPII trans 87.6 13 0.00029 40.4 14.9 190 438-636 190-399 (415)
270 KOG4185 Predicted E3 ubiquitin 87.4 0.51 1.1E-05 48.9 3.5 63 262-324 4-77 (296)
271 PF12031 DUF3518: Domain of un 87.2 1.2 2.5E-05 43.7 5.5 79 452-530 139-227 (257)
272 COG5109 Uncharacterized conser 87.1 0.42 9.1E-06 47.9 2.5 45 259-303 334-383 (396)
273 PF12530 DUF3730: Protein of u 87.1 27 0.00058 34.8 15.4 136 398-547 2-150 (234)
274 KOG2032 Uncharacterized conser 86.8 19 0.00041 39.1 14.5 226 405-631 267-531 (533)
275 KOG0414 Chromosome condensatio 86.6 3.2 7E-05 49.3 9.4 140 397-549 920-1065(1251)
276 KOG4535 HEAT and armadillo rep 86.5 0.7 1.5E-05 49.3 3.8 181 410-590 405-604 (728)
277 COG5209 RCD1 Uncharacterized p 86.2 2.5 5.4E-05 40.8 6.9 99 494-592 116-221 (315)
278 KOG2062 26S proteasome regulat 85.7 19 0.00041 41.0 14.3 66 519-592 554-621 (929)
279 COG5220 TFB3 Cdk activating ki 85.7 0.28 6E-06 47.1 0.4 47 260-306 9-63 (314)
280 KOG3161 Predicted E3 ubiquitin 85.7 0.39 8.6E-06 52.6 1.5 38 260-300 10-51 (861)
281 KOG1060 Vesicle coat complex A 85.2 16 0.00035 41.8 13.5 171 439-630 37-208 (968)
282 PF05290 Baculo_IE-1: Baculovi 84.3 1 2.2E-05 39.5 3.2 51 260-310 79-135 (140)
283 PF11707 Npa1: Ribosome 60S bi 83.9 61 0.0013 34.1 18.4 156 398-553 58-242 (330)
284 KOG2137 Protein kinase [Signal 83.7 19 0.0004 41.0 13.3 133 477-618 388-524 (700)
285 KOG1991 Nuclear transport rece 83.4 67 0.0014 38.1 17.8 135 354-491 410-560 (1010)
286 KOG3665 ZYG-1-like serine/thre 83.4 24 0.00052 41.1 14.7 192 377-586 494-694 (699)
287 KOG1078 Vesicle coat complex C 83.4 29 0.00062 39.9 14.5 72 397-472 246-317 (865)
288 PF11701 UNC45-central: Myosin 83.4 8.4 0.00018 35.7 9.2 144 478-626 3-154 (157)
289 KOG3665 ZYG-1-like serine/thre 83.1 10 0.00022 44.1 11.6 191 419-627 494-693 (699)
290 cd03569 VHS_Hrs_Vps27p VHS dom 82.9 7.3 0.00016 35.5 8.4 73 353-425 40-114 (142)
291 KOG2956 CLIP-associating prote 82.5 41 0.00089 36.4 14.6 145 480-631 331-477 (516)
292 PF08324 PUL: PUL domain; Int 82.5 12 0.00025 38.1 10.8 145 480-624 108-267 (268)
293 PF14500 MMS19_N: Dos2-interac 82.5 57 0.0012 33.1 15.4 219 400-633 3-239 (262)
294 KOG0414 Chromosome condensatio 82.4 15 0.00032 44.0 12.3 148 366-531 935-1083(1251)
295 KOG1820 Microtubule-associated 82.3 17 0.00038 42.7 13.0 178 447-633 263-445 (815)
296 KOG1788 Uncharacterized conser 82.3 26 0.00057 41.4 13.8 252 375-631 663-982 (2799)
297 PF05918 API5: Apoptosis inhib 82.3 9.9 0.00021 42.5 10.6 128 481-626 26-157 (556)
298 COG5627 MMS21 DNA repair prote 82.1 0.73 1.6E-05 44.3 1.6 57 261-317 189-249 (275)
299 PF14668 RICTOR_V: Rapamycin-i 82.0 9.2 0.0002 30.4 7.5 66 536-602 4-70 (73)
300 KOG1967 DNA repair/transcripti 81.2 8.5 0.00018 44.7 9.6 145 478-624 867-1017(1030)
301 KOG1967 DNA repair/transcripti 80.4 5.6 0.00012 46.1 7.9 146 354-501 867-1018(1030)
302 KOG2930 SCF ubiquitin ligase, 80.3 1.2 2.6E-05 37.1 2.0 28 278-306 80-107 (114)
303 KOG2933 Uncharacterized conser 80.1 8.8 0.00019 39.2 8.4 137 442-587 93-232 (334)
304 PF14225 MOR2-PAG1_C: Cell mor 79.3 48 0.001 33.6 13.6 175 437-629 60-252 (262)
305 PF14726 RTTN_N: Rotatin, an a 78.9 17 0.00038 30.7 8.6 68 517-584 28-95 (98)
306 KOG4275 Predicted E3 ubiquitin 78.9 0.28 6.1E-06 48.6 -2.4 41 261-306 300-341 (350)
307 KOG3002 Zn finger protein [Gen 78.8 1.6 3.5E-05 44.8 2.9 60 257-323 44-104 (299)
308 PF10363 DUF2435: Protein of u 78.8 5.9 0.00013 33.1 5.7 71 353-425 2-72 (92)
309 cd03561 VHS VHS domain family; 78.6 13 0.00027 33.4 8.4 73 353-425 36-112 (133)
310 cd03568 VHS_STAM VHS domain fa 78.6 13 0.00028 34.0 8.4 73 353-425 36-110 (144)
311 KOG2062 26S proteasome regulat 78.5 27 0.00058 39.9 12.1 97 396-506 554-652 (929)
312 KOG0883 Cyclophilin type, U bo 78.4 1.5 3.3E-05 45.3 2.5 56 258-315 38-93 (518)
313 KOG4464 Signaling protein RIC- 77.9 31 0.00067 36.7 11.7 103 367-469 110-234 (532)
314 KOG0298 DEAD box-containing he 77.6 0.68 1.5E-05 55.1 -0.2 46 257-303 1149-1195(1394)
315 KOG2025 Chromosome condensatio 76.8 35 0.00077 38.8 12.4 105 436-544 84-189 (892)
316 smart00288 VHS Domain present 76.7 14 0.00031 33.1 8.1 73 353-425 36-111 (133)
317 KOG1243 Protein kinase [Genera 76.6 44 0.00096 38.0 13.3 261 359-636 259-520 (690)
318 PF01347 Vitellogenin_N: Lipop 76.1 46 0.001 38.3 14.3 166 397-586 396-586 (618)
319 KOG1943 Beta-tubulin folding c 75.3 56 0.0012 39.1 14.0 223 395-635 340-577 (1133)
320 PF11707 Npa1: Ribosome 60S bi 75.2 97 0.0021 32.6 15.2 156 355-510 57-240 (330)
321 cd03567 VHS_GGA VHS domain fam 75.1 17 0.00037 32.9 8.1 73 353-425 37-116 (139)
322 KOG2025 Chromosome condensatio 74.9 61 0.0013 37.0 13.6 104 477-584 84-188 (892)
323 PRK14707 hypothetical protein; 74.8 2.8E+02 0.006 36.3 20.5 274 354-630 205-487 (2710)
324 PF11865 DUF3385: Domain of un 74.8 18 0.00039 33.7 8.5 142 438-587 11-155 (160)
325 PF11865 DUF3385: Domain of un 74.6 15 0.00032 34.3 7.8 143 397-546 11-155 (160)
326 KOG1940 Zn-finger protein [Gen 74.4 2 4.4E-05 43.2 2.2 43 261-304 158-204 (276)
327 KOG2137 Protein kinase [Signal 73.9 29 0.00063 39.5 11.1 136 394-534 387-523 (700)
328 KOG1788 Uncharacterized conser 73.8 1.9E+02 0.0041 34.8 17.3 81 510-590 899-983 (2799)
329 PF07814 WAPL: Wings apart-lik 73.7 56 0.0012 34.9 13.1 240 398-644 23-312 (361)
330 PF05883 Baculo_RING: Baculovi 72.0 3.4 7.4E-05 36.7 2.7 45 261-306 26-79 (134)
331 KOG2032 Uncharacterized conser 71.0 40 0.00087 36.7 10.8 152 354-507 258-415 (533)
332 KOG2933 Uncharacterized conser 70.8 29 0.00062 35.6 9.2 143 353-506 87-233 (334)
333 COG5116 RPN2 26S proteasome re 70.7 52 0.0011 36.5 11.6 123 395-531 550-674 (926)
334 COG5218 YCG1 Chromosome conden 70.5 40 0.00086 37.5 10.7 103 518-625 90-193 (885)
335 PHA02825 LAP/PHD finger-like p 68.8 5.7 0.00012 36.3 3.5 46 261-307 8-59 (162)
336 KOG4535 HEAT and armadillo rep 68.4 60 0.0013 35.3 11.3 262 369-633 270-561 (728)
337 KOG4362 Transcriptional regula 68.3 1.9 4.1E-05 48.7 0.4 48 260-307 20-69 (684)
338 KOG1814 Predicted E3 ubiquitin 68.1 5 0.00011 42.2 3.4 34 260-293 183-219 (445)
339 PF10367 Vps39_2: Vacuolar sor 68.0 2.1 4.6E-05 36.7 0.6 33 257-289 74-108 (109)
340 PF14569 zf-UDP: Zinc-binding 67.8 7.2 0.00016 30.9 3.4 46 262-307 10-62 (80)
341 PF14666 RICTOR_M: Rapamycin-i 67.6 1.1E+02 0.0023 30.3 12.5 130 492-631 78-225 (226)
342 smart00638 LPD_N Lipoprotein N 67.5 99 0.0021 35.2 14.3 206 397-629 312-543 (574)
343 cd03561 VHS VHS domain family; 67.3 28 0.0006 31.2 7.7 74 561-634 38-115 (133)
344 KOG1991 Nuclear transport rece 66.5 1.4E+02 0.0031 35.5 14.7 135 396-532 410-560 (1010)
345 PLN03076 ARF guanine nucleotid 66.4 2.7E+02 0.0058 36.3 18.3 200 406-612 1147-1403(1780)
346 cd03572 ENTH_epsin_related ENT 66.1 20 0.00043 31.6 6.3 71 561-631 39-119 (122)
347 PRK14707 hypothetical protein; 65.8 4.2E+02 0.0092 34.8 19.8 266 357-628 166-442 (2710)
348 PF12530 DUF3730: Protein of u 65.6 1.5E+02 0.0032 29.5 15.2 135 358-506 4-150 (234)
349 cd03568 VHS_STAM VHS domain fa 65.6 25 0.00054 32.1 7.1 73 561-633 38-112 (144)
350 KOG1941 Acetylcholine receptor 65.5 2.8 6.1E-05 43.4 1.0 44 260-303 364-412 (518)
351 PF14726 RTTN_N: Rotatin, an a 65.4 44 0.00096 28.2 8.0 94 369-462 2-96 (98)
352 PF12906 RINGv: RING-variant d 65.1 5.6 0.00012 28.6 2.2 39 264-302 1-47 (47)
353 PF05605 zf-Di19: Drought indu 65.1 2.6 5.7E-05 31.2 0.6 38 260-304 1-39 (54)
354 cd03569 VHS_Hrs_Vps27p VHS dom 64.9 32 0.00069 31.3 7.7 73 561-633 42-116 (142)
355 COG5098 Chromosome condensatio 64.5 19 0.00042 40.6 7.1 107 522-630 302-414 (1128)
356 PF08167 RIX1: rRNA processing 64.2 20 0.00044 33.5 6.5 107 438-547 26-142 (165)
357 PF14446 Prok-RING_1: Prokaryo 63.6 6 0.00013 29.2 2.1 29 261-289 5-37 (54)
358 COG5098 Chromosome condensatio 63.5 22 0.00047 40.3 7.2 108 480-592 301-418 (1128)
359 PF08167 RIX1: rRNA processing 62.6 21 0.00044 33.4 6.2 111 397-510 26-146 (165)
360 smart00638 LPD_N Lipoprotein N 62.6 1.8E+02 0.0039 33.1 15.2 132 438-586 394-542 (574)
361 KOG1243 Protein kinase [Genera 61.7 37 0.00079 38.6 8.7 183 394-586 328-512 (690)
362 PF14225 MOR2-PAG1_C: Cell mor 61.2 1.9E+02 0.0041 29.3 16.1 173 397-588 65-253 (262)
363 COG5116 RPN2 26S proteasome re 61.1 42 0.00091 37.2 8.7 67 518-592 550-618 (926)
364 PF01347 Vitellogenin_N: Lipop 61.0 1.6E+02 0.0035 33.8 14.6 130 398-544 433-585 (618)
365 PF00790 VHS: VHS domain; Int 60.2 30 0.00065 31.3 6.7 73 352-424 40-117 (140)
366 PF08746 zf-RING-like: RING-li 60.1 9.9 0.00021 26.7 2.7 39 264-302 1-43 (43)
367 PHA02862 5L protein; Provision 60.0 7.2 0.00016 34.9 2.4 44 263-307 4-53 (156)
368 PF10363 DUF2435: Protein of u 59.5 35 0.00076 28.5 6.4 72 521-593 5-76 (92)
369 KOG1020 Sister chromatid cohes 59.0 4.7E+02 0.01 33.1 18.0 264 359-645 1126-1419(1692)
370 PF14353 CpXC: CpXC protein 57.7 7.2 0.00016 34.7 2.1 46 261-307 1-49 (128)
371 KOG3899 Uncharacterized conser 57.6 6.4 0.00014 39.3 1.8 28 280-307 326-365 (381)
372 KOG1020 Sister chromatid cohes 57.1 94 0.002 38.7 11.4 112 396-514 816-928 (1692)
373 PF11864 DUF3384: Domain of un 56.9 3.1E+02 0.0067 30.3 17.3 255 356-630 29-329 (464)
374 KOG4739 Uncharacterized protei 56.7 4.1 8.9E-05 39.9 0.4 48 272-324 15-63 (233)
375 PRK12495 hypothetical protein; 56.7 13 0.00028 35.9 3.6 31 188-219 7-37 (226)
376 cd03567 VHS_GGA VHS domain fam 56.5 49 0.0011 30.0 7.3 73 561-633 39-118 (139)
377 COG5218 YCG1 Chromosome conden 55.9 51 0.0011 36.7 8.4 112 395-513 90-202 (885)
378 TIGR00634 recN DNA repair prot 55.8 3.6E+02 0.0077 30.7 16.3 52 31-84 182-233 (563)
379 smart00288 VHS Domain present 55.8 55 0.0012 29.3 7.5 73 561-633 38-113 (133)
380 KOG2038 CAATT-binding transcri 55.7 3.1E+02 0.0067 31.9 14.4 53 604-656 499-551 (988)
381 PRK06266 transcription initiat 54.8 16 0.00034 34.7 4.0 53 259-327 115-168 (178)
382 KOG0301 Phospholipase A2-activ 54.6 1.3E+02 0.0028 34.2 11.3 158 407-571 555-727 (745)
383 PF04641 Rtf2: Rtf2 RING-finge 53.8 16 0.00035 37.0 4.2 37 260-296 33-70 (260)
384 COG1675 TFA1 Transcription ini 53.2 37 0.0008 32.0 6.0 51 259-325 111-162 (176)
385 PF10521 DUF2454: Protein of u 52.4 82 0.0018 32.3 9.2 70 478-547 119-202 (282)
386 TIGR00373 conserved hypothetic 51.9 27 0.00059 32.4 5.0 35 259-309 107-141 (158)
387 PF08216 CTNNBL: Catenin-beta- 50.8 15 0.00033 31.5 2.8 42 372-414 64-105 (108)
388 KOG4718 Non-SMC (structural ma 50.7 9.8 0.00021 36.3 1.8 46 262-308 182-228 (235)
389 COG3813 Uncharacterized protei 50.5 13 0.00029 28.8 2.2 37 278-317 26-62 (84)
390 PF12830 Nipped-B_C: Sister ch 50.5 69 0.0015 30.6 7.8 70 561-635 9-78 (187)
391 KOG1832 HIV-1 Vpr-binding prot 50.4 58 0.0013 38.1 7.9 131 388-518 593-784 (1516)
392 PF10272 Tmpp129: Putative tra 50.3 11 0.00024 39.7 2.3 26 282-307 314-351 (358)
393 PLN02189 cellulose synthase 50.2 11 0.00024 44.8 2.6 46 262-307 35-87 (1040)
394 PF10521 DUF2454: Protein of u 49.7 89 0.0019 32.0 8.9 110 437-546 119-251 (282)
395 PHA03096 p28-like protein; Pro 49.2 11 0.00024 38.5 2.1 43 262-304 179-231 (284)
396 KOG3970 Predicted E3 ubiquitin 49.2 26 0.00056 33.7 4.3 45 263-307 52-105 (299)
397 PLN02436 cellulose synthase A 47.6 13 0.00028 44.4 2.6 46 262-307 37-89 (1094)
398 PF08216 CTNNBL: Catenin-beta- 47.4 18 0.00039 31.0 2.7 42 496-537 64-105 (108)
399 KOG1566 Conserved protein Mo25 47.0 3.5E+02 0.0076 28.1 14.4 197 432-630 74-285 (342)
400 KOG0825 PHD Zn-finger protein 46.1 18 0.0004 41.2 3.3 38 256-293 91-135 (1134)
401 PLN02638 cellulose synthase A 45.1 15 0.00034 43.9 2.7 46 262-307 18-70 (1079)
402 PF03854 zf-P11: P-11 zinc fin 45.0 8.4 0.00018 27.4 0.4 31 278-309 18-48 (50)
403 PF11864 DUF3384: Domain of un 43.9 4.9E+02 0.011 28.8 18.0 75 409-488 42-117 (464)
404 PLN02195 cellulose synthase A 43.2 18 0.00039 42.9 2.8 45 263-307 8-59 (977)
405 KOG2034 Vacuolar sorting prote 43.1 22 0.00048 41.3 3.5 33 261-293 817-851 (911)
406 PF12830 Nipped-B_C: Sister ch 42.4 1.1E+02 0.0023 29.3 7.7 65 355-424 9-73 (187)
407 COG5656 SXM1 Importin, protein 42.4 6.2E+02 0.013 29.6 17.4 134 354-489 408-553 (970)
408 KOG4231 Intracellular membrane 42.4 15 0.00033 39.8 1.9 62 570-631 338-399 (763)
409 cd00197 VHS_ENTH_ANTH VHS, ENT 42.2 1.6E+02 0.0035 25.3 8.2 70 353-422 36-112 (115)
410 KOG0396 Uncharacterized conser 42.0 19 0.00042 37.5 2.5 47 262-308 331-380 (389)
411 PF00790 VHS: VHS domain; Int 41.9 75 0.0016 28.7 6.2 72 561-632 43-119 (140)
412 KOG1812 Predicted E3 ubiquitin 41.7 18 0.0004 38.8 2.5 47 261-307 146-203 (384)
413 PF07191 zinc-ribbons_6: zinc- 41.2 2.5 5.5E-05 32.9 -3.0 41 261-307 1-41 (70)
414 PLN02915 cellulose synthase A 40.9 29 0.00062 41.6 4.0 47 261-307 15-68 (1044)
415 cd00730 rubredoxin Rubredoxin; 40.7 13 0.00029 27.1 0.8 14 256-269 29-42 (50)
416 cd00350 rubredoxin_like Rubred 40.5 22 0.00048 23.3 1.8 11 295-305 16-26 (33)
417 PRK11088 rrmA 23S rRNA methylt 40.4 14 0.0003 37.7 1.3 26 261-286 2-30 (272)
418 KOG3268 Predicted E3 ubiquitin 39.9 19 0.00041 33.3 1.8 31 277-307 188-228 (234)
419 PF06416 DUF1076: Protein of u 39.8 24 0.00052 30.2 2.3 51 259-310 38-94 (113)
420 smart00531 TFIIE Transcription 39.4 15 0.00033 33.6 1.3 38 259-308 97-135 (147)
421 PF13251 DUF4042: Domain of un 39.2 1.9E+02 0.004 27.6 8.6 137 412-550 2-176 (182)
422 KOG4445 Uncharacterized conser 39.2 23 0.00049 35.8 2.4 47 261-307 115-186 (368)
423 PF10274 ParcG: Parkin co-regu 39.1 2.3E+02 0.0049 27.0 9.0 73 478-550 38-111 (183)
424 PF12231 Rif1_N: Rap1-interact 38.7 5.2E+02 0.011 27.6 13.8 132 409-546 59-202 (372)
425 COG2176 PolC DNA polymerase II 37.2 31 0.00067 41.7 3.5 42 255-308 908-951 (1444)
426 COG5236 Uncharacterized conser 37.1 31 0.00066 35.5 3.0 49 259-307 59-108 (493)
427 cd08050 TAF6 TATA Binding Prot 36.9 1.3E+02 0.0029 31.7 8.0 104 354-467 178-298 (343)
428 cd03565 VHS_Tom1 VHS domain fa 36.8 2.7E+02 0.0059 25.2 9.0 73 353-425 37-115 (141)
429 PF00301 Rubredoxin: Rubredoxi 36.4 15 0.00033 26.4 0.6 15 255-269 28-42 (47)
430 PF06844 DUF1244: Protein of u 36.3 22 0.00049 27.2 1.5 13 282-294 11-23 (68)
431 PF11791 Aconitase_B_N: Aconit 35.8 42 0.00091 30.6 3.4 25 604-628 96-120 (154)
432 PLN03205 ATR interacting prote 34.8 1.4E+02 0.003 31.8 7.3 117 521-638 325-453 (652)
433 PLN02400 cellulose synthase 34.5 20 0.00043 43.1 1.4 46 262-307 37-89 (1085)
434 PF04821 TIMELESS: Timeless pr 34.3 5.1E+02 0.011 26.2 11.6 60 354-425 13-72 (266)
435 KOG3579 Predicted E3 ubiquitin 34.2 24 0.00053 35.2 1.8 35 260-294 267-305 (352)
436 PF04499 SAPS: SIT4 phosphatas 32.2 2.6E+02 0.0056 31.1 9.6 111 518-632 20-150 (475)
437 PF13811 DUF4186: Domain of un 32.1 31 0.00068 29.5 1.8 20 273-293 64-86 (111)
438 PF00619 CARD: Caspase recruit 31.7 1.7E+02 0.0037 23.4 6.3 65 27-92 2-67 (85)
439 KOG2038 CAATT-binding transcri 31.7 8E+02 0.017 28.8 13.0 91 366-466 316-409 (988)
440 COG1592 Rubrerythrin [Energy p 31.6 31 0.00067 32.2 1.9 13 261-273 134-146 (166)
441 PF07800 DUF1644: Protein of u 31.2 23 0.00049 32.5 0.9 21 260-280 1-21 (162)
442 PF13251 DUF4042: Domain of un 31.0 3.7E+02 0.0081 25.5 9.2 140 494-633 2-176 (182)
443 cd00197 VHS_ENTH_ANTH VHS, ENT 30.8 2.3E+02 0.005 24.3 7.4 70 561-630 38-114 (115)
444 PRK04023 DNA polymerase II lar 30.6 45 0.00098 39.6 3.4 65 259-327 624-693 (1121)
445 PF11791 Aconitase_B_N: Aconit 30.5 64 0.0014 29.5 3.6 30 479-508 95-124 (154)
446 KOG1609 Protein involved in mR 30.2 47 0.001 34.5 3.3 48 261-308 78-135 (323)
447 PRK14892 putative transcriptio 29.2 61 0.0013 27.5 3.1 66 255-335 15-83 (99)
448 KOG1087 Cytosolic sorting prot 29.2 1.8E+02 0.0039 32.1 7.5 71 353-423 37-110 (470)
449 PLN03076 ARF guanine nucleotid 29.1 1.5E+03 0.032 30.0 17.0 261 364-631 1147-1489(1780)
450 PF14666 RICTOR_M: Rapamycin-i 28.9 5.8E+02 0.012 25.2 11.0 128 411-547 79-224 (226)
451 PF14663 RasGEF_N_2: Rapamycin 28.5 96 0.0021 27.0 4.4 40 520-559 9-48 (115)
452 COG3809 Uncharacterized protei 28.4 12 0.00026 29.7 -1.1 12 262-273 2-13 (88)
453 PF07923 N1221: N1221-like pro 28.3 1.3E+02 0.0029 31.0 6.2 58 350-407 56-127 (293)
454 KOG1815 Predicted E3 ubiquitin 28.2 51 0.0011 36.3 3.3 35 259-293 68-103 (444)
455 PF06012 DUF908: Domain of Unk 28.1 1.8E+02 0.0039 30.6 7.2 65 452-516 237-306 (329)
456 PF12231 Rif1_N: Rap1-interact 27.8 3E+02 0.0064 29.5 9.0 174 406-587 3-202 (372)
457 COG5656 SXM1 Importin, protein 27.4 6E+02 0.013 29.7 11.1 113 477-591 407-530 (970)
458 PF10235 Cript: Microtubule-as 27.2 42 0.0009 27.8 1.7 38 261-308 44-81 (90)
459 PF06012 DUF908: Domain of Unk 27.2 1.6E+02 0.0034 31.0 6.6 76 411-486 237-324 (329)
460 PF08506 Cse1: Cse1; InterPro 27.0 8E+02 0.017 26.2 15.4 146 476-626 208-370 (370)
461 PF12074 DUF3554: Domain of un 26.5 2.6E+02 0.0056 29.4 8.2 228 368-615 1-257 (339)
462 KOG0972 Huntingtin interacting 26.2 3.2E+02 0.0068 27.8 7.8 96 126-221 246-349 (384)
463 PF06906 DUF1272: Protein of u 26.2 76 0.0017 23.6 2.7 27 280-309 28-54 (57)
464 cd08330 CARD_ASC_NALP1 Caspase 25.8 2.4E+02 0.0052 22.8 6.0 57 29-86 3-60 (82)
465 PRK01343 zinc-binding protein; 25.0 52 0.0011 24.7 1.8 33 261-293 9-41 (57)
466 KOG1949 Uncharacterized conser 25.0 1E+03 0.022 27.8 12.2 144 440-589 177-331 (1005)
467 PF12726 SEN1_N: SEN1 N termin 24.6 4.3E+02 0.0093 31.2 10.3 114 438-553 442-557 (727)
468 PF13240 zinc_ribbon_2: zinc-r 24.3 50 0.0011 19.8 1.3 9 297-305 14-22 (23)
469 KOG0309 Conserved WD40 repeat- 23.8 55 0.0012 37.4 2.4 43 261-304 1028-1073(1081)
470 PF10571 UPF0547: Uncharacteri 23.7 43 0.00094 20.7 0.9 7 264-270 3-9 (26)
471 PF04216 FdhE: Protein involve 23.5 13 0.00029 38.3 -2.2 43 262-305 173-220 (290)
472 KOG4231 Intracellular membrane 23.2 1.6E+02 0.0034 32.4 5.5 62 404-465 336-398 (763)
473 COG4888 Uncharacterized Zn rib 23.0 45 0.00098 28.0 1.2 64 254-328 15-81 (104)
474 KOG0392 SNF2 family DNA-depend 22.9 8.2E+02 0.018 30.5 11.6 234 353-591 76-327 (1549)
475 KOG2462 C2H2-type Zn-finger pr 22.8 49 0.0011 33.2 1.6 32 262-309 188-228 (279)
476 KOG1848 Uncharacterized conser 22.7 1.8E+02 0.0039 36.1 6.4 112 436-551 839-961 (1610)
477 PF00096 zf-C2H2: Zinc finger, 22.7 24 0.00053 20.5 -0.3 13 262-274 1-13 (23)
478 KOG1832 HIV-1 Vpr-binding prot 22.7 2.3E+02 0.005 33.5 6.9 89 408-498 365-459 (1516)
479 cd03572 ENTH_epsin_related ENT 22.5 4.9E+02 0.011 23.0 7.7 54 353-406 37-92 (122)
480 PF06676 DUF1178: Protein of u 22.5 34 0.00074 31.2 0.5 24 278-306 9-42 (148)
481 KOG0314 Predicted E3 ubiquitin 22.3 42 0.00092 36.4 1.2 66 256-323 214-283 (448)
482 COG5537 IRR1 Cohesin [Cell div 22.2 4.4E+02 0.0096 29.9 8.8 106 358-466 279-386 (740)
483 cd08329 CARD_BIRC2_BIRC3 Caspa 22.2 1.7E+02 0.0036 24.5 4.5 63 24-87 6-69 (94)
484 KOG4464 Signaling protein RIC- 22.1 6.5E+02 0.014 27.2 9.6 132 440-571 48-198 (532)
485 cd03565 VHS_Tom1 VHS domain fa 21.8 4.7E+02 0.01 23.6 7.8 72 561-632 39-116 (141)
486 PRK05452 anaerobic nitric oxid 21.5 1.8E+02 0.0038 32.4 5.9 45 254-305 418-467 (479)
487 PF08506 Cse1: Cse1; InterPro 21.5 7.4E+02 0.016 26.5 10.4 127 452-584 226-370 (370)
488 COG5183 SSM4 Protein involved 21.3 84 0.0018 36.3 3.2 48 260-307 11-66 (1175)
489 PF10274 ParcG: Parkin co-regu 21.0 7.3E+02 0.016 23.6 10.7 110 521-633 40-166 (183)
490 PF12783 Sec7_N: Guanine nucle 20.9 6.1E+02 0.013 23.4 8.7 76 514-591 68-148 (168)
491 PF00412 LIM: LIM domain; Int 20.8 82 0.0018 23.1 2.2 33 259-291 24-57 (58)
492 PLN03086 PRLI-interacting fact 20.8 1.1E+02 0.0023 34.7 3.9 16 55-70 94-109 (567)
493 KOG2199 Signal transducing ada 20.6 3.1E+02 0.0068 29.2 6.9 72 560-631 45-118 (462)
494 KOG1992 Nuclear export recepto 20.6 4.5E+02 0.0098 31.0 8.7 46 396-441 498-544 (960)
495 PF10083 DUF2321: Uncharacteri 20.5 4.1E+02 0.0088 24.5 6.8 90 281-388 28-120 (158)
496 KOG3476 Microtubule-associated 20.4 20 0.00044 28.9 -1.2 37 262-308 55-91 (100)
497 PF06685 DUF1186: Protein of u 20.0 9E+02 0.019 24.3 14.2 73 434-517 70-153 (249)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=256.90 Aligned_cols=296 Identities=23% Similarity=0.270 Sum_probs=264.4
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-cchh
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~-~~k~ 431 (661)
|.++.+|+.|.. .++..|..|+++|.+++.++.+....+++.|++|.++.+|.+++..++++|+|+|+|++.+. ..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 789999999975 56899999999999999999999999999999999999999999999999999999999984 5688
Q ss_pred HhhhCCChHHHHHHHccCCH-HHHHHHHHHHHHcccCCch-hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006099 432 SIVSSGAVPSIVHVLRIGSM-EARENAAATLFSLSVIDEN-KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
.+...|++++|+.++...+. ....++.|+|.|||..... ...-.-..++|.|..++.+.|+++..+|+|||.+|+.+.
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999988764 7889999999999988643 333333488999999999999999999999999999888
Q ss_pred CchHHH-HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHH
Q 006099 510 GNKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVH 586 (661)
Q Consensus 510 ~~~~~i-v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~ 586 (661)
+.+.++ ++.|+++.|+.+|.+.+..++..|+++++|++...+. .+.+++.|++|.|..++. +.....|..|+|++.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 777755 5899999999999999999999999999999776654 578889999999999998 5566689999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH-HHHHHHHhhhhhHHHh
Q 006099 587 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQVQTESQSQI 649 (661)
Q Consensus 587 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~-~~~~~~l~~~~~~~~l 649 (661)
++.++.+..+.+++.|++|.|+.++++++-++|+.|+|++.|+.... +++-..+.+.+...-+
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl 412 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL 412 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh
Confidence 99999999999999999999999999999999999999999998655 6777778777755443
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=284.64 Aligned_cols=282 Identities=24% Similarity=0.300 Sum_probs=254.8
Q ss_pred hhhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc
Q 006099 352 ERTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~ 428 (661)
....+.++++.|+++ +++.|.+|+..|+.+++.++++|..+++ .|+||.|+.+|++++..++.+|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 357899999999976 7899999999999999999999999986 7999999999999999999999999999999999
Q ss_pred chhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC---chhhhh-hhcCCcHHHHHhhhcCC---HHHHHHHHHH
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID---ENKVTI-GASGAIPPLVTLLSEGT---QRGKKDAATA 501 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~---~~~~~i-~~~g~i~~Lv~lL~~~~---~~~~~~a~~a 501 (661)
++..|+..|++++|+.+|++++++.+++|+++|++|+.++ .++..+ ...|+||+|+.++++++ .-++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874 455454 46799999999999984 2345677899
Q ss_pred HHHhhcccCchHH-HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCC-CHHHHH
Q 006099 502 LFNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNG-SPRNRE 578 (661)
Q Consensus 502 L~nL~~~~~~~~~-iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~ke 578 (661)
|+||+.+.+++.. +++.|+++.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|++|.|+++|+++ ++.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999999875 57999999999999999999999999999888765 67899999999999999999865 468999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC---------hHHHHHHHHHHHHHHhhH
Q 006099 579 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT---------DRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 579 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~---------~~~k~~A~~lL~~L~~~~ 633 (661)
+|+|+|.+||.+++++...+++.|+++.|+.++.+++ ...++.|.|+|.|++...
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999998654 345899999999999753
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=7.9e-26 Score=270.98 Aligned_cols=283 Identities=26% Similarity=0.361 Sum_probs=251.8
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch
Q 006099 351 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k 430 (661)
.+.++++.|+++|.+++...|..|++.|++++.++++++..+++.|+||+|+++|++++..+|++|+++|+|++.++++.
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi 522 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI 522 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 35678999999999999999999999999999989999999999999999999999999999999999999999987664
Q ss_pred hH-hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh-------------------------------------h
Q 006099 431 GS-IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-------------------------------------V 472 (661)
Q Consensus 431 ~~-i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-------------------------------------~ 472 (661)
.. +...|++++|+++|++++++.++.|+++|++|+...+.. .
T Consensus 523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 44 558899999999999999999999999999996432211 0
Q ss_pred h-hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC--
Q 006099 473 T-IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-- 548 (661)
Q Consensus 473 ~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-- 548 (661)
. ....|+++.|++++++++..+++.|+++|.|++.+... ...++..|+|++|+.+|.+.+.++++.+.++|.+|+.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 1 11348999999999999999999999999999986554 5678899999999999999999999999999999985
Q ss_pred ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 549 HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 549 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
.++.+..+++.|+++.|+++|.+.+..+++.|+.+|.+++...+ ....+...|+++.|+.++++|+++.|+.|+++|..
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34556678899999999999999999999999999999998764 67777889999999999999999999999999999
Q ss_pred HHhhHH
Q 006099 629 MSRFIE 634 (661)
Q Consensus 629 L~~~~~ 634 (661)
|++..+
T Consensus 762 L~~~~~ 767 (2102)
T PLN03200 762 LLKHFP 767 (2102)
T ss_pred HHhCCC
Confidence 997664
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-27 Score=231.08 Aligned_cols=293 Identities=25% Similarity=0.384 Sum_probs=272.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
-.++..|+..+.++..++|+.++.+|.+|+. .+.+|..++..|++.+|.++-+++|..+|.++..+|.|+....+||..
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~ 203 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRV 203 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhh
Confidence 3567788888888888999999999999997 489999999999999999988999999999999999999999999999
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcC--CcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASG--AIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
++.+|+++.++.++++++..+++.++.++.+++.+..+|..+.+.+ .++.|+++.++++++++..|..+|.||+...+
T Consensus 204 LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 204 LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 9999999999999999999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC-HHHHHHHHHHHHHHhc
Q 006099 511 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLVHLCA 589 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~ke~A~~~L~~L~~ 589 (661)
....++++|.+|.++++|.++.....-..++++.|++.+|-+-..|++.|.+.+|+++|+.++ .+.|-+|+.+|++|+.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 999999999999999999998888888999999999999999999999999999999999765 5589999999999999
Q ss_pred CCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHH
Q 006099 590 GDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 647 (661)
Q Consensus 590 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~ 647 (661)
.+..++..+.+.|++|.|..++.++...++.....++..|+ .++..+..+-+.+...
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La-l~d~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA-LNDNDKEALLDSGIIP 420 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH-hccccHHHHhhcCCcc
Confidence 88889999999999999999999999999999999999887 5666777777655543
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=2.3e-26 Score=225.00 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=256.0
Q ss_pred hhhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-cc
Q 006099 352 ERTKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DN 429 (661)
Q Consensus 352 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~-~~ 429 (661)
+.|.++.+++.+. +...-.|.+|+++|-+++.+.......++++|++|.++++|.+++.+++++++|+|+|++.+. ..
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 4588999999994 455567999999999999888888888899999999999999999999999999999999985 56
Q ss_pred hhHhhhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCc-hhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006099 430 KGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 506 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 506 (661)
|..+...|++++++.+|.+. +..+..++.|+|.||+.... ....-.-+.++|.|.+++-+.++++..+|+|++..|+
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 88889999999999999876 35888999999999998642 2222223467999999999999999999999999999
Q ss_pred cccCchHH-HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 507 IYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 507 ~~~~~~~~-iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
..+..+.. ++..|+.+.|+.+|.+++..++..|++.++|+....+. .+.+++.|+++.+..+|.+....+|..|||++
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 98887775 55899999999999999999999999999999776654 47788999999999999988889999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH---HHHHHHHhhhhh
Q 006099 585 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI---EQQKQAQVQTES 645 (661)
Q Consensus 585 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~---~~~~~~l~~~~~ 645 (661)
.|+..++.+..+.+++.+.+|+|+.++...+...++.|+|++.|..... +..-+.+.+.|.
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~ 415 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGF 415 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999987644 344444444443
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-25 Score=221.08 Aligned_cols=281 Identities=23% Similarity=0.287 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
.|.+..+.+.-++.+..+|+.+...|.+++ ++.++|..++.+|++|.|+.+++++|..+|..++.++.|++.+..+|..
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 467888888777889999999999999998 4899999999999999999999999999999999999999999999999
Q ss_pred hhhCC--ChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 433 IVSSG--AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 433 i~~~g--~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
+++.| .++.++.+++++++.++..|.-+|.+|+.+.++...|.+.|.+|.++++|++......-....++.|++.++-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99877 9999999999999999999999999999999999999999999999999998877777778889999999999
Q ss_pred chHHHHHcCChHHHHhcccCCC-ccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 511 NKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
|..-++++|.+.+|+++|..++ .+++-+|..+|+||+. ...++..|.+.|++|.+.+++.++.-.+++.-..++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999999998754 5599999999999998 6688899999999999999999998889998888888887
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHH
Q 006099 589 AGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 589 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
.++ .....+.+.|+++.|+.+..+.+.+++..|+.+|-|+++..+.
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 654 5788889999999999999999999999999999999976543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.1e-23 Score=220.54 Aligned_cols=296 Identities=23% Similarity=0.313 Sum_probs=258.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHh-hChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCC-cch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAK-RNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE-DNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~-~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~-~~k 430 (661)
......+..+.++++..|..+...++.+.. .....-..+...|.||.++.+|.. .++.+|..|+|+|.|++... +.-
T Consensus 66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 346888999999999999999999998753 222334556666999999999975 46999999999999998764 445
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCH-HHHHHHHHHHHHhhcc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQ-RGKKDAATALFNLCIY 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~ 508 (661)
..++++|+++.++.+|.+++..+++.|+|+|.|++.+. ..|..+...|++++|+.++...+. ...+.+.|+|.|||.+
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 55669999999999999999999999999999999886 578899999999999999998765 7789999999999998
Q ss_pred cCchHHHH-HcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q 006099 509 QGNKGKAV-RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 586 (661)
Q Consensus 509 ~~~~~~iv-~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~ 586 (661)
...-..+. -..++|.|..++.+.|..+...|+++|..|+.++ +.-+.+++.|++|.|+++|.+.++.++.-|+.++.|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 76444433 3578999999999999999999999999999766 556788999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 006099 587 LCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 587 L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l 649 (661)
+..+++...+.++..|+++.|..++. +..+..|+.|+|++.|+..-..++.+++.+++....|
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~L 369 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVL 369 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHH
Confidence 99999999999999999999999998 5677799999999999999889999999998877544
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=1.4e-23 Score=205.62 Aligned_cols=290 Identities=21% Similarity=0.245 Sum_probs=254.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHH-HhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLL-AKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..++.+.+.|.|+|.+.|.+|+...+.+ +++....-..++++|++|.+++++. ....-.+-.|.|+|.|++....++.
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 3568999999999999999999999875 5556666778899999999999994 4566678899999999998766666
Q ss_pred Hhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-hhhhhhhcCCcHHHHHhhhcCCH--HHHHHHHHHHHHhhc
Q 006099 432 SIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGTQ--RGKKDAATALFNLCI 507 (661)
Q Consensus 432 ~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~a~~aL~nL~~ 507 (661)
.++ ++|++|.++.+|.+++.++++.++|+|.|++.+.+ .|..+.+.|++.+++.++.+... ...+++.|+|.|||.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 554 99999999999999999999999999999999875 78899999999999999998754 778999999999998
Q ss_pred ccCchH--HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 508 YQGNKG--KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 508 ~~~~~~--~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
...... .-+ ..++|.|.+++.+.++++...|++++..|+..+ +.-..+++.|..+.|+++|.+.+..++.-|+..+
T Consensus 231 GknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 231 GKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 754322 222 247899999999999999999999999999988 4557889999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 006099 585 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTE 644 (661)
Q Consensus 585 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~ 644 (661)
.|+..+++..-+.++..|+++.+..++.+...++++.|+|.+.|+..-..++.+++.+..
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~n 369 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDAN 369 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcc
Confidence 999999988889999999999999999999999999999999999998888888877744
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=8.8e-18 Score=187.67 Aligned_cols=293 Identities=19% Similarity=0.204 Sum_probs=240.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhC
Q 006099 357 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS 436 (661)
Q Consensus 357 ~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~ 436 (661)
+.+-..+.. .....+.++..|.+++. ++.+...+...|+|+.|+++|.+++.++...+++.|.+||...+||..|.+.
T Consensus 253 kk~~~l~~k-QeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRK-QEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 333333333 33445577888999995 8899999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH
Q 006099 437 GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV 516 (661)
Q Consensus 437 g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv 516 (661)
|+++.|++++.+++.+++..++.+|+|||.+++.|..|++.|++|.|+.+|.+++ .+..++.+|++||..+++|..+.
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999998654 55678999999999999999999
Q ss_pred HcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHH
Q 006099 517 RAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL 595 (661)
Q Consensus 517 ~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~ 595 (661)
..++++.+++++.. ++..+...+++++.||+.++.+.+.+.+.|+++.|++..-..... -...++.|++.+++...
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLK 485 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHH
Confidence 99999999998755 666677778899999999999999999989999999877543322 23468899999886555
Q ss_pred HHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhhhccCCcc
Q 006099 596 AEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQEARLPSNA 658 (661)
Q Consensus 596 ~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 658 (661)
..+. +.+..|+.++.++ ++...-.+..+|.||.-.+....+.+.+.+.+.-|.+.-.|-.+
T Consensus 486 ~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 486 ELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 4443 4788888888775 67788888999999975554555555555555555444444333
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=3.3e-17 Score=183.13 Aligned_cols=294 Identities=21% Similarity=0.251 Sum_probs=245.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..+.++.|++.|.+++.+....++..|.+|+. ..+|+..+.+.|+||.|++++.+++..++..++.+|.|||.+.+.|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 45889999999999999999999999999996 78899999999999999999999999999999999999999999999
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccC
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~ 510 (661)
.|+..|++|.|+.+|.++ ..+..+..+|++||.++++|..+...+++|.|++++-++ ++++...++.++.||+.+..
T Consensus 367 ~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 999999999999999865 456679999999999999999999999999999988765 45566677888888988888
Q ss_pred chHHHHHcCChHHHHhc-------------------------------------ccC-CCccHHHHHHHHHHHhcCChhh
Q 006099 511 NKGKAVRAGVVPTLMHL-------------------------------------LTE-PGGGMVDEALAILAILSSHPEG 552 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~l-------------------------------------L~~-~~~~~~~~al~~L~~L~~~~~~ 552 (661)
+...+.+.|+++.|++. +.. .+.+..-.++++|+||...+..
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 87777776666655442 222 2345667789999999876655
Q ss_pred HHHHH-hCCChHHHHHHhhCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--ChHHHHHHHHHHH
Q 006099 553 KAAIG-AAEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLE 627 (661)
Q Consensus 553 ~~~i~-~~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~ 627 (661)
...++ +.+.+|.|..+|..+ .+.+...++..++.+|. ++.....+.+.|+++.|++++... +.+..-....++.
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 55555 469999999999865 36788888988888885 567888889999999999999754 7888888888888
Q ss_pred HHHhhHHHHHHHHhhhhhHHHh
Q 006099 628 RMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 628 ~L~~~~~~~~~~l~~~~~~~~l 649 (661)
.|-.+.+.....+.+.+...-+
T Consensus 604 ~ll~h~~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 604 QLLFHEETREVLLKETEIPAYL 625 (708)
T ss_pred HHHcChHHHHHHHhccchHHHH
Confidence 8888776666666666655444
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.76 E-value=4.3e-19 Score=142.10 Aligned_cols=73 Identities=52% Similarity=0.953 Sum_probs=63.7
Q ss_pred CCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCC
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 330 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 330 (661)
+|++|.||||+++|.|||++++||||||.+|++|+..++.+||.|+.+++...+.||..+++.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 5899999999999999999999999999999999998789999999999999999999999999999998753
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=1.1e-14 Score=159.21 Aligned_cols=282 Identities=24% Similarity=0.286 Sum_probs=231.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC---Ccc
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC---EDN 429 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~---~~~ 429 (661)
...++..+.+|.+.++..|-.|...|..++..+...+..+.+.|+||.||.+|.+.+.++|.+|+++|.||... .+|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999864 358
Q ss_pred hhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhh------------------------------------
Q 006099 430 KGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKV------------------------------------ 472 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~------------------------------------ 472 (661)
|-.|.+.++++.++++|+. ++.++++.+..+|+||+++|..+.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999999986 589999999999999988754433
Q ss_pred -------------------hhhhc-CCcHHHHHhhhc------CCHHHHHHH----------------------------
Q 006099 473 -------------------TIGAS-GAIPPLVTLLSE------GTQRGKKDA---------------------------- 498 (661)
Q Consensus 473 -------------------~i~~~-g~i~~Lv~lL~~------~~~~~~~~a---------------------------- 498 (661)
++.+. |.|..|+..+++ .+....+++
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 22222 556666665541 123333444
Q ss_pred --------------------------------------------------------------------HHHHHHhhcccC
Q 006099 499 --------------------------------------------------------------------ATALFNLCIYQG 510 (661)
Q Consensus 499 --------------------------------------------------------------------~~aL~nL~~~~~ 510 (661)
+.+|.||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 444444443322
Q ss_pred -----chHHH-HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC------HHHHH
Q 006099 511 -----NKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS------PRNRE 578 (661)
Q Consensus 511 -----~~~~i-v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~~ke 578 (661)
.+..+ ....+.+.|+.+|..++..++..+..+|.||+.+..++..|. .++++.|++.|..+. .++-.
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence 12222 345677899999999999999999999999999999998888 679999999998543 46677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHhhHHH
Q 006099 579 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 579 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~~~~~ 635 (661)
.++.+|.++...+..+...+.+.+.++.|+.+..+. +++.-+.|..+|..|..+.+.
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998875 779999999999999987754
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-14 Score=142.94 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=234.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CChHHHHHHHHHHHhcc-CCCcchhHhhhCCChH
Q 006099 364 TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLS-ICEDNKGSIVSSGAVP 440 (661)
Q Consensus 364 ~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs-~~~~~k~~i~~~g~i~ 440 (661)
.+++...-.+++..|..+....++ +.+..+...++.+|.. ++.++-...+..+..-+ .++.||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456777888899999988865544 4566778888888865 45566555555555554 4688999999999999
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHcccCCchhh----------hhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcc
Q 006099 441 SIVHVLRIG-SMEARENAAATLFSLSVIDENKV----------TIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIY 508 (661)
Q Consensus 441 ~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~----------~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~ 508 (661)
.+...|... ...+...+.+++..|..+|+.|. .|...|++..|++.++-+ ++.+...++.+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999888665 34688889999999988776654 455668899999999876 688889999999999999
Q ss_pred cCchHHHHHcCChHHHHhcccC-CC---ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh--CCCHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTE-PG---GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG--NGSPRNRENAAA 582 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~-~~---~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~ke~A~~ 582 (661)
++.+..+.+.|++..|+.++.+ ++ ..+.+.++.+|..|+.+++.+..|++.|+.+.++.++. +++|.+-+.++.
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999987 22 34667899999999999999999999999999999884 567999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC--hHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhh
Q 006099 583 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT--DRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQE 651 (661)
Q Consensus 583 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l~~ 651 (661)
++.-||-..|++...+++.|+....++.++... ..+++.|.++++||...+.+++..+.+-|...-|.-
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~ 423 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRT 423 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHH
Confidence 999999999999999999999999999988664 557899999999999988877777766666555443
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.59 E-value=2.7e-14 Score=161.60 Aligned_cols=261 Identities=21% Similarity=0.199 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC------------CChHHHHHHHHHHHhccCC-CcchhHhh-hCC
Q 006099 372 RSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST------------PDSRTQEHAVTALLNLSIC-EDNKGSIV-SSG 437 (661)
Q Consensus 372 ~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s------------~~~~i~~~A~~~L~nLs~~-~~~k~~i~-~~g 437 (661)
+.|+..|-+++. +.++|..+.+.|++..+-+||.- ....++++|..+|.||.+. ..||..+. ..|
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 377788888885 89999999999998888887742 1356899999999999875 56777766 789
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccCC-ch-hhhhhhcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcc-cCchH
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVID-EN-KVTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIY-QGNKG 513 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~-~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~-~~~~~ 513 (661)
+++.+|..|.+...++....+.+|.||+..- .| +..+-+.|.+..|+...- .......+..+.|||||+.+ .+||.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 9999999999998899999999999999774 34 444555699999988754 44567888999999999876 67888
Q ss_pred HHHH-cCChHHHHhcccC----CCccHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 514 KAVR-AGVVPTLMHLLTE----PGGGMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 514 ~iv~-~g~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
.|.. .|++..||.+|.. ....+.+.+-++|.|++. .++.|+.+.+.+++..|+..|++.+-.+.-+++.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 8875 7999999999975 345788899999998765 568888889999999999999999988899999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 585 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 585 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
|||...+++..+.+++.|+++.|..++++.+..+-+-++.+|+||-.+.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999997655
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=4.5e-13 Score=132.20 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=231.1
Q ss_pred hHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcch
Q 006099 354 TKIEILLCKLT--SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~--s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k 430 (661)
.++..++..|. ..+.+.-...+..++.-+..+..||..+.+.++.|.+...|... ...+.+.+++++.-|..+++.|
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 45566666665 35567778888889998888999999999999999999877653 4457778899999998876533
Q ss_pred ----------hHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCH----HHH
Q 006099 431 ----------GSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ----RGK 495 (661)
Q Consensus 431 ----------~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~ 495 (661)
..|+..|++..|++.|+-+ ++.....++.+|..|+..++....|.+.|++..|++++.+.+. ...
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 3566788999999999877 7888999999999999999999999999999999999988432 345
Q ss_pred HHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC--CCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCC
Q 006099 496 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNG 572 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~ 572 (661)
+.++..|..|+.+++++..+++.|+.+.++.++.. .++.+...++.++..||- .|+....+++.|+-...++-|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 78899999999999999999999999999998844 788899999999998875 567888899999999999999854
Q ss_pred --CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 573 --SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 573 --~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
...++.+|++.+.||...+..++..++..| ++.|+...+...+.....|..+|+.|.-
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 366799999999999999888888887765 5667777777777788888888888763
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=2.4e-13 Score=135.66 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch
Q 006099 352 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k 430 (661)
+.+.++.|+..|.+ .++.+|..|+..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35788999999985 689999999999999874 8899999999999999999999999999999999999999999998
Q ss_pred hHhhhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 431 GSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
..|-. .++.+++...+. +.+++..+..+|.+|+..++++..+. +.++.++++|.+|+..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88743 577777765554 67899999999999999888877764 4799999999999999999999999999999
Q ss_pred cCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCC
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSH 549 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~ 549 (661)
+.+...++..+++..++.++.. .+.++.-.++.++.|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999977 5678889999999999764
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=2.5e-13 Score=135.45 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=171.3
Q ss_pred HHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh
Q 006099 393 AEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 393 ~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
.+.+-+..|+.+|+. .|+.+++.|+.++.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+...+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556678999999986 5899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcCCcHHHHHhhhcC--CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 472 VTIGASGAIPPLVTLLSEG--TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
..|-. +++.+.+.+.+. +..++..++++|.||+..++.+..+. +.++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88743 577777766655 56888999999999998887766654 4799999999999999999999999999999
Q ss_pred hhhHHHHHhCCChHHHHHHhhCC-CHHHHHHHHHHHHHHhc
Q 006099 550 PEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVLVHLCA 589 (661)
Q Consensus 550 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~~ke~A~~~L~~L~~ 589 (661)
+.....++..++++.++.+++.. +...-..++.+..||..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999865 56678889999999864
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=9.8e-14 Score=157.14 Aligned_cols=303 Identities=20% Similarity=0.203 Sum_probs=242.8
Q ss_pred hhHHHHHHHHHccC---CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH----------hhCCC-------ChHH
Q 006099 353 RTKIEILLCKLTSG---SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG----------LLSTP-------DSRT 412 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~---~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~----------lL~s~-------~~~i 412 (661)
.+-++.|++.|.-. +.+.+..|-.+|.++....++.+..-.+..+++.|-+ .|... ..+.
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 47789999999754 4467788888999998766655444444444443332 22221 1334
Q ss_pred HH-HHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc-----C-------CHHHHHHHHHHHHHcccCCc-hhhhhhhc-
Q 006099 413 QE-HAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-----G-------SMEARENAAATLFSLSVIDE-NKVTIGAS- 477 (661)
Q Consensus 413 ~~-~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----~-------~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~- 477 (661)
+. .|+.+|..++++++.|..|-+.|++..|.++|.- + ...+|.++..+|.||.+.+. ||..+...
T Consensus 314 ~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 44 7888899999999999999999999999998841 1 24689999999999999985 67777665
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC--chHHHHHcCChHHHHhcc-cCCCccHHHHHHHHHHHhcCCh-hhH
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILAILSSHP-EGK 553 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~~~iv~~g~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~-~~~ 553 (661)
|++..+|..|.+...++..-.+.+|.||+...+ .+..+-+.|-|..|+..- ........+..|.+||||+.+. +++
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 999999999999998999999999999998755 355566789999988775 4466678899999999999986 888
Q ss_pred HHHHhC-CChHHHHHHhhCC----CHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHH
Q 006099 554 AAIGAA-EAVPVLVEVIGNG----SPRNRENAAAVLVHLCA---GDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQL 625 (661)
Q Consensus 554 ~~i~~~-g~i~~Lv~lL~~~----~~~~ke~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~l 625 (661)
..|... |++..|+.+|... .-.+-+.|-.||.|+.. ....+++.+.+.+.+..|+..+.+.+--+.-.++.+
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 888775 8999999999743 34567889999988753 344689999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhhhhhHHHhhhhccC
Q 006099 626 LERMSRFIEQQKQAQVQTESQSQIQEARLP 655 (661)
Q Consensus 626 L~~L~~~~~~~~~~l~~~~~~~~l~~~~~~ 655 (661)
||||...+.+.++++++.+++.+|.+=--.
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhh
Confidence 999999999999999999999888764333
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.53 E-value=8e-15 Score=114.61 Aligned_cols=63 Identities=59% Similarity=1.000 Sum_probs=59.9
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHH
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQW 324 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~ 324 (661)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+.+++...+.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999986 77899999999999999999999999987
No 20
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-13 Score=127.03 Aligned_cols=228 Identities=23% Similarity=0.295 Sum_probs=168.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCch--------HHHHHhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 006099 58 PEETSKALVSLKEALASAKELLRFGSEGSK--------IYLVLERGEIMTKFYEVTAQLEQALSAISYENLDISDEVKEQ 129 (661)
Q Consensus 58 ~~~~~~~l~~L~~~l~~a~~ll~~c~~~sk--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~s~~v~e~ 129 (661)
+--.+.++|-|. ++.-....++|+..-- -|++.++......|.+.+..|.++++....+.+...+++-.+
T Consensus 45 ~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~ 122 (284)
T KOG4642|consen 45 SYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKA 122 (284)
T ss_pred hhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 335678888877 8888888888864333 399999999999999999999999999988888899999887
Q ss_pred HHHHHHH-HHHhhccCCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCchh
Q 006099 130 VELVLSQ-FRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLAEKLQLMGIADLTQESLALHEMVASTGGDPGET 208 (661)
Q Consensus 130 i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~E~~~l~~~~~~~~~~~~~~ 208 (661)
+..++.+ +.-.+.++..++.++..++.+++.+.+++. +.+.-+- | .+...++.--.-+ ..+.+..
T Consensus 123 L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~-----~s~~~~N-~-~sde~~k~~q~~~-------~~~~d~~ 188 (284)
T KOG4642|consen 123 LRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERE-----LSEWQEN-G-ESDEHLKTMQVPI-------EQDHDHT 188 (284)
T ss_pred HHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhH-----HHHHHHc-C-CChHHHhhhcchh-------HHHHHHH
Confidence 7776654 333333444456677777777666522211 1111111 2 1222222211111 1234456
Q ss_pred HHHHHHHHHHHhHhhhccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCccCcCCcccccCCeecCCCccccHHHH
Q 006099 209 IEKMSMLLKKIKDFVQTENPNLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCI 288 (661)
Q Consensus 209 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I 288 (661)
+..|.++.+++.+ .....++|+.++|.|++++|++||+.|+|.||+|.-|
T Consensus 189 ~kel~elf~~v~e------------------------------~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I 238 (284)
T KOG4642|consen 189 TKELSELFSKVDE------------------------------KRKKREVPDYLCGKITLELMREPVITPSGITYDRADI 238 (284)
T ss_pred HHHHHHHHHHHHH------------------------------HhccccccchhhhhhhHHhhcCCccCccccchhHHHH
Confidence 6777787777743 2234578999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCCC
Q 006099 289 EKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 331 (661)
Q Consensus 289 ~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 331 (661)
.+++.+-+...|+++.+++...+.||..++..|..|...|.|.
T Consensus 239 ~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 239 EEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred HHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 9999988888999999999999999999999999999999884
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.45 E-value=2.5e-11 Score=134.59 Aligned_cols=278 Identities=17% Similarity=0.162 Sum_probs=223.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
....+.|...|.++++.++.-++..|+.+..++......+.+.+.++.++.+|.++|..+...|+.+|.+++.+..+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45678899999999999999999999999987777677788899999999999999999999999999999998877777
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
+...+.+..|..++...+..+|..+..++.+++..+ +....+..+|.++.++..+++.|.-++.+++.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 888888999999998878889999999999998765 4566666779999999999998889999999999999999999
Q ss_pred hHHHHHcCChHHHHhcccCC--Cc---c-HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHH
Q 006099 512 KGKAVRAGVVPTLMHLLTEP--GG---G-MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 585 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~--~~---~-~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~ 585 (661)
...+.+.|+++.|..++.+. ++ . +.-..+...++++......-.-.-...+..+.+++.+.++..+..|..+++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 99999999999999999762 22 1 223344677788775222111111234556667777889999999999999
Q ss_pred HHhcCCHHHHHHH-HHc-C----CHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 586 HLCAGDQQYLAEA-KEL-G----VMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 586 ~L~~~~~~~~~~~-~~~-g----~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+|+... ....+ ... + ++........+++.++|..+..+|.++-.
T Consensus 316 ~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 316 QIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9997654 44333 333 2 34455555667888899999999999843
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=1.2e-09 Score=121.24 Aligned_cols=297 Identities=14% Similarity=0.148 Sum_probs=229.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccch
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k 430 (661)
+.+.++.++..+.+.+.++...|+..|..+++ ++.....+...+.++.|..++...+..+|..+..++.+++.. ++..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 35788999999999999999999999999997 455566777888899999999988888999999999999865 5567
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHH------HHHHHHHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRG------KKDAATALFN 504 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------~~~a~~aL~n 504 (661)
..+...|.++.++..|++.|.-++.+++.+|..|+..+.+...+.+.|+++.|..++.+...+. .-..+....+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 7777899999999999998889999999999999998889999999999999999997652221 1223356677
Q ss_pred hhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHH-HhCC-ChH----HHHHHhhCCCHHHHH
Q 006099 505 LCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAI-GAAE-AVP----VLVEVIGNGSPRNRE 578 (661)
Q Consensus 505 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i-~~~g-~i~----~Lv~lL~~~~~~~ke 578 (661)
++...+....-.-...+..|..++.+.+...+..|+.+++.++...+|+..+ ...| .+. .+.....++..++|.
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~ 355 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKL 355 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHH
Confidence 7776443332223456666777777889999999999999999999999888 4433 333 444444567778999
Q ss_pred HHHHHHHHHhcCCH----HHHHH-------HHHcCCHH-HHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhH
Q 006099 579 NAAAVLVHLCAGDQ----QYLAE-------AKELGVMG-PLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 646 (661)
Q Consensus 579 ~A~~~L~~L~~~~~----~~~~~-------~~~~g~i~-~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~ 646 (661)
.++.+|.++....+ ..... ....+-.. .++.+++.+-+++|..|..+|..++.+.-..+......|-+
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfi 435 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFI 435 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHH
Confidence 99999999843222 11111 12233444 77888888889999999999999998876666665555554
Q ss_pred HHh
Q 006099 647 SQI 649 (661)
Q Consensus 647 ~~l 649 (661)
.-+
T Consensus 436 e~l 438 (503)
T PF10508_consen 436 EYL 438 (503)
T ss_pred hhh
Confidence 433
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.29 E-value=3.9e-10 Score=115.04 Aligned_cols=289 Identities=12% Similarity=0.084 Sum_probs=228.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC---C----ChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST---P----DSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s---~----~~~i~~~A~~~L~nLs~ 425 (661)
.+.++.|.+...|++.++-.+..+.|+++|..+.++|..+.+.|+-..+++.|+. . +.+....++..|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 5778888888888889999999999999999999999999999998888888865 1 23566677888999877
Q ss_pred C-CcchhHhhhCCChHHHHHHHccC--CH--------------------------------------------HHHHHHH
Q 006099 426 C-EDNKGSIVSSGAVPSIVHVLRIG--SM--------------------------------------------EARENAA 458 (661)
Q Consensus 426 ~-~~~k~~i~~~g~i~~Lv~lL~~~--~~--------------------------------------------e~~~~a~ 458 (661)
+ ++.+..+++.|+++.+...+.-+ +. ..++...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 6 45588889999999777665321 11 1244455
Q ss_pred HHHHHcccCCchhhhhhhcCCcHHHHHhhhcC-CH-------HHHHHHHHHHHHhhcccCchHHHHHcC-ChHHHHhccc
Q 006099 459 ATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQ-------RGKKDAATALFNLCIYQGNKGKAVRAG-VVPTLMHLLT 529 (661)
Q Consensus 459 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~-------~~~~~a~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~ 529 (661)
.+|...+.++..+-.+++.|.+..++++++.- +. ...+.++....-|...++.-..+...+ .++.++.++.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 66666677777777888889999999998762 11 222344444445555666666666655 8899999999
Q ss_pred CCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 006099 530 EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-----GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM 604 (661)
Q Consensus 530 ~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i 604 (661)
+.+......+.-+++|++..++....+++.|.+..|+++|.. |+-+.+..++.+|.|+..-- .+...+...|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchH
Confidence 999999999999999999999999999999999999998853 45677888889999998743 477888999999
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 006099 605 GPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQ 642 (661)
Q Consensus 605 ~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~ 642 (661)
+.++..+....|++..+-...|+.+....+....+++.
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~k 442 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAK 442 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhc
Confidence 99999999999999999999999999888765555554
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.7e-09 Score=110.19 Aligned_cols=288 Identities=14% Similarity=0.178 Sum_probs=205.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
.+..+..||+.|..++.+.-.....-|..|+. ..+|+..+.+.|.|..|++++...+++.+...+..|.|+|.+..++.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 34678889999988888777777888888885 67899999999999999999999999999999999999999999999
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh-----------------------
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----------------------- 488 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----------------------- 488 (661)
.++..|.+|.++.+|.+.+. ...|...|+.+|.+++.+..+....+|+.+...+-
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999977532 22344444444444444443333333332222221
Q ss_pred --------------------------------------------------------cC-CHHHHHHHHHHHHHhhcccCc
Q 006099 489 --------------------------------------------------------EG-TQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 489 --------------------------------------------------------~~-~~~~~~~a~~aL~nL~~~~~~ 511 (661)
.. +......++++|+||...+-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 11 112223445556666555554
Q ss_pred hHHHH-HcCChHHHHhcccC--CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC--CHHHHHHHHHHHHH
Q 006099 512 KGKAV-RAGVVPTLMHLLTE--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVH 586 (661)
Q Consensus 512 ~~~iv-~~g~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~ 586 (661)
-..++ +...||-+-..|.. ...+++-..+-.++.++....+...+..+|.++.++++|+.. +.+....-..+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 44444 35566666666654 234455666666777788888888888889999999999853 34445555666667
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 006099 587 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQ 642 (661)
Q Consensus 587 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~ 642 (661)
+..+.......+.+...-..|+.++++.+..+++-+-.+|..++.++++..+.++.
T Consensus 619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~ 674 (791)
T KOG1222|consen 619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAG 674 (791)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 77764445555566677888999999999999999999999999988776555443
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.27 E-value=1.3e-10 Score=127.80 Aligned_cols=243 Identities=23% Similarity=0.270 Sum_probs=177.4
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC---chhh
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID---ENKV 472 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~---~~~~ 472 (661)
-+|..+.+|.+.++.+|-+|..-|-.++.. ++.|..+..-|+|+.++.+|.+.+.+++.+|+++|.||+... +|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 467888999999999999999999999875 667888889999999999999999999999999999998764 5788
Q ss_pred hhhhcCCcHHHHHhhhc-CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCC--------------CccHHH
Q 006099 473 TIGASGAIPPLVTLLSE-GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP--------------GGGMVD 537 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--------------~~~~~~ 537 (661)
.|.+.++|+.++++|+. +|.++++.+..+|+||+.++.-+..++.. ++..|..-+-.+ +..+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 99999999999999996 78999999999999999997777666542 333332222110 123344
Q ss_pred HHHHHHHHhcC-ChhhHHHHHhC-CChHHHHHHhh---------------------------------------------
Q 006099 538 EALAILAILSS-HPEGKAAIGAA-EAVPVLVEVIG--------------------------------------------- 570 (661)
Q Consensus 538 ~al~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~lL~--------------------------------------------- 570 (661)
.+..+|.|++. ..++|+.+.+. |.|..|+..++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 45555555544 23333333332 33333333332
Q ss_pred ---------------------------------------------------------CCCHHHHHHHHHHHHHHhcCCH-
Q 006099 571 ---------------------------------------------------------NGSPRNRENAAAVLVHLCAGDQ- 592 (661)
Q Consensus 571 ---------------------------------------------------------~~~~~~ke~A~~~L~~L~~~~~- 592 (661)
+.++.+.|.++.+|-||+.+..
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 2345556777777777776543
Q ss_pred ---HHHHHH-HHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 006099 593 ---QYLAEA-KELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 593 ---~~~~~~-~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
..+..+ .++.+.+.|++++..+++++.+.+..+|+||+. +...+..++
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~lig 604 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIG 604 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-Cchhhhhhh
Confidence 222333 577889999999999999999999999999985 444455555
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=1.4e-10 Score=102.82 Aligned_cols=118 Identities=24% Similarity=0.301 Sum_probs=110.5
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
.+++.|+++.|+++|.+++..++..++.+|.+++.. ++....+.+.|+++.++++|.++++.++..|+++|.+|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 367889999999999998899999999999999998 7888889999999999999999999999999999999999988
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.....+.+.|+++.|..++..++.++++.|.++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888999999999999999999999999999999863
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.19 E-value=2.9e-10 Score=100.74 Aligned_cols=117 Identities=32% Similarity=0.432 Sum_probs=106.5
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc-cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP- 550 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~- 550 (661)
.+.+.|+++.|++++.+++...+..++.+|.+++.. ++....+++.|+++.++++|.+++..++..|+++|.+++..+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356779999999999999999999999999999998 667778888999999999999999999999999999999887
Q ss_pred hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 551 EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 551 ~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
.....+...|+++.|++++++++..+++.|+++|.+||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 455667888999999999999999999999999999973
No 28
>PRK09687 putative lyase; Provisional
Probab=99.16 E-value=1.6e-09 Score=110.61 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=151.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
-.+..|+..|.+.+..++..|+..|..+.. ..+++.+..+++++|+.+|..|+++|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 457889999999999999999999887642 23567778888889999999999999887542211
Q ss_pred hhCCChHHHHHH-HccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 434 VSSGAVPSIVHV-LRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 434 ~~~g~i~~Lv~l-L~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
...+++.|..+ +++.++.++..|+.+|.++....... ...++..+...+.+.+..++..++.+|..+..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 22356777766 55668889999999998885432211 11245556666777777888888888865431
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
..+++.|+.+|.+++..++..|+..|+.+..... .+++.|+..|.+.++.+|..|++.|..+-..
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-- 222 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKDK-- 222 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCCh--
Confidence 2367778888877777788888888877732111 3456677777777777777777777664321
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.+++.|+..+.+++ ++..|..+|..+.
T Consensus 223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 223 ---------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred ---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 25555555555544 3344555555554
No 29
>PRK09687 putative lyase; Provisional
Probab=99.16 E-value=1.8e-09 Score=110.21 Aligned_cols=224 Identities=17% Similarity=0.114 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHh-hCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGL-LSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
...+..+...+.+.++.++..|++.|..+.... .. ....++.|..+ ++++++.++..|+.+|+++.......
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~- 125 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY- 125 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-
Confidence 356777888888999999999999999985321 11 12356888877 67789999999999999986432211
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
...+++.+...+.+.++.+|..++.+|..+. ...+++.|+.+|.+.++.++..|+.+|..+....
T Consensus 126 ---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-- 190 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-- 190 (280)
T ss_pred ---chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--
Confidence 1224566777788889999999999997553 3458899999999999999999999999993322
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
..+++.|+.+|.+.+..++..|+..|+.+-. ..++|.|+..|++++ ++..|+.+|..+...
T Consensus 191 ------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 191 ------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK- 251 (280)
T ss_pred ------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-
Confidence 2567789999999999999999999987542 258999999998766 567788888888653
Q ss_pred HHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHH
Q 006099 592 QQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLE 627 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~ 627 (661)
.++|.|..++. +++.+++.+|.+.|.
T Consensus 252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 37899999996 789999999998875
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.9e-09 Score=109.89 Aligned_cols=267 Identities=18% Similarity=0.197 Sum_probs=206.4
Q ss_pred HHHHHHHHcc---CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 356 IEILLCKLTS---GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 356 i~~Lv~~L~s---~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
+..+-+.++. .....-+.|+.-|-+++. +...-..+...+.|..|++.|...+.+.....+..|..||...+||..
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~ 340 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIV 340 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHH
Confidence 4444444443 123334567778888885 556666777888999999999999999999999999999999999999
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
+.+.|.++.++++....+++++......|+|||.+...+.++++.|.+|.|..+|.+.+.. ..|+..|+.++.++..+
T Consensus 341 M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K 418 (791)
T KOG1222|consen 341 MEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAK 418 (791)
T ss_pred HHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999876532 45788999999999999
Q ss_pred HHHHHcCChHHHHhcccCC-CccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh-hCCCHHHHHHHHHHHHHHhcC
Q 006099 513 GKAVRAGVVPTLMHLLTEP-GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~ke~A~~~L~~L~~~ 590 (661)
..+....+|+.+++.+-.. +.++-...++.-.|||.+..+.+.+.+-.++..|.+.- +..++- -..++.|+..+
T Consensus 419 ~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqH 494 (791)
T KOG1222|consen 419 AMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQH 494 (791)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhc
Confidence 9999999999999987664 34443333344459999998888888877888776643 344332 24567888887
Q ss_pred CHHHHHHHHHcCCHHHHHHhhhcCChH-HHHHHHHHHHHHHh
Q 006099 591 DQQYLAEAKELGVMGPLVDLAQNGTDR-GKRKAAQLLERMSR 631 (661)
Q Consensus 591 ~~~~~~~~~~~g~i~~L~~ll~~~~~~-~k~~A~~lL~~L~~ 631 (661)
.+.....+++ .+..|..++.+.+++ ---.+..+|.+|.-
T Consensus 495 eg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 495 EGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred cchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 7656666555 566777777766443 34555666666653
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.11 E-value=9.1e-09 Score=109.41 Aligned_cols=274 Identities=14% Similarity=0.088 Sum_probs=204.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
...++..|..+|..++..|+..|..+...++.+.......-....|...|++. +...+..++.+|..|...++.|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45666788888999999999999998754443221111111334556666654 46778888899999999999999888
Q ss_pred hCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccC-
Q 006099 435 SSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQG- 510 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~- 510 (661)
+.++++.|+.+|+.. +..+..+++-+++-||..++....+...+.|+.|+++++.. .+++.+.++.+|.||...+.
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999764 56899999999999999988777777779999999999976 46788999999999987542
Q ss_pred ------chHHHHHcCChHHHHhcccC--CCccHHHHHHH-------HHHHhcCChh------------------------
Q 006099 511 ------NKGKAVRAGVVPTLMHLLTE--PGGGMVDEALA-------ILAILSSHPE------------------------ 551 (661)
Q Consensus 511 ------~~~~iv~~g~v~~Lv~lL~~--~~~~~~~~al~-------~L~~L~~~~~------------------------ 551 (661)
....|+..|+.+.+-.+-.. .|+++.+..-. -+..+++.++
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 23356777776655444433 55555443221 2224443222
Q ss_pred hHHHHHhC--CChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 552 GKAAIGAA--EAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 552 ~~~~i~~~--g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
+...+-+. ..+..|+++|. +.++.+..-||.=++.++.+.|..+..+-+.|+-..++.++.+.+++++..|..++.-
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22333333 35788999995 4567777888888999999988888888899999999999999999999999998876
Q ss_pred H
Q 006099 629 M 629 (661)
Q Consensus 629 L 629 (661)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 32
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.07 E-value=1e-10 Score=108.92 Aligned_cols=62 Identities=29% Similarity=0.604 Sum_probs=53.3
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHh---------------CCCCCCCCCCCCcCCCCccchhh
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA---------------GHRTCPKTQQTLTSTAVTPNYVL 317 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~---------------~~~~cP~~~~~l~~~~l~~n~~l 317 (661)
.+..++|.||||++.+.|||+++|||.||+.||.+|+.. +...||.|+..++...+.|.+.-
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 355678999999999999999999999999999999852 23689999999998888887644
No 33
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.06 E-value=8.4e-11 Score=82.66 Aligned_cols=39 Identities=41% Similarity=0.934 Sum_probs=31.0
Q ss_pred CcCCcccccCCeecCCCccccHHHHHHHHHhCC---CCCCCC
Q 006099 264 CPISLELMKDPVIVSTGQTYERSCIEKWLEAGH---RTCPKT 302 (661)
Q Consensus 264 CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~---~~cP~~ 302 (661)
||||+++|.+||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998433 468876
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-08 Score=112.16 Aligned_cols=258 Identities=17% Similarity=0.178 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHH-hhChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCC-Cc
Q 006099 353 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLA-KRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSIC-ED 428 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~-~~ 428 (661)
...+..|++.|... ++..|.+|+.+|..+. -.+.+.-..+--..+||.|+.+|+++ +.+++..|+++|.+|+.. +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788899999875 8999999999998753 34444444455556899999999986 799999999999999875 77
Q ss_pred chhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006099 429 NKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 507 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 507 (661)
....+++.++||.++.-|..- ..++.++++.+|..||..+ ...|.+.|++...+..|+.-+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999877664 6899999999999998654 4678889999999999998888999999999999987
Q ss_pred ccC--chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHHhhCCC----HHHH
Q 006099 508 YQG--NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGS----PRNR 577 (661)
Q Consensus 508 ~~~--~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~k 577 (661)
.-. .-..++ .++|.|-.+|...+....+.++-++..++. .++--+++...|.|.....+|.... ..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 533 222333 589999999998888888888888877665 3455578888899999999887432 2345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC
Q 006099 578 ENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG 614 (661)
Q Consensus 578 e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 614 (661)
.-.+..|..+|++.+-....+.+.++...|..++...
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 5567788888888887778888888888888888643
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=5.2e-10 Score=117.01 Aligned_cols=71 Identities=18% Similarity=0.460 Sum_probs=64.4
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHH
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (661)
..+...|.||||++++.+||+++|||+||..||..|+. ....||.|+..+....+.+|..+.++++.|...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~-~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLS-NQPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHh-CCCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999998 456899999999888899999999999998753
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.96 E-value=8.7e-08 Score=98.20 Aligned_cols=220 Identities=15% Similarity=0.051 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-C----H---HHHHHHHHHHHHcccCCchhhhhhhcC-Cc
Q 006099 410 SRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-S----M---EARENAAATLFSLSVIDENKVTIGASG-AI 480 (661)
Q Consensus 410 ~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~----~---e~~~~a~~~L~~Ls~~~~~~~~i~~~g-~i 480 (661)
+++.+....+|...+.++..+-.+++.|.++.++.++..- + . ..-..++....-|...|+...++...+ ++
T Consensus 238 ~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l 317 (604)
T KOG4500|consen 238 EDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFL 317 (604)
T ss_pred cchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHH
Confidence 4455666777777777777888888999999999998651 1 1 233455666666777788777777776 99
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-----CCccHHHHHHHHHHHhcCChhhHHH
Q 006099 481 PPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEGKAA 555 (661)
Q Consensus 481 ~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~~~~ 555 (661)
+.++..+.+.+......+.-+|+|++.++.++..+++.|.+..|+.+|.. ++.+.+..++.+|.||.-.-.++..
T Consensus 318 ~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~ 397 (604)
T KOG4500|consen 318 DFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAH 397 (604)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhh
Confidence 99999999999999999999999999999999999999999999999854 5678899999999999999999999
Q ss_pred HHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcCChH-HHHHHHHHHHHH
Q 006099 556 IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNGTDR-GKRKAAQLLERM 629 (661)
Q Consensus 556 i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~-~k~~A~~lL~~L 629 (661)
++.+|+...++..++..+|.+...-..+|..+--.-+. .+........+..|++...+.+.. +--...++|.-+
T Consensus 398 ~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 99999999999999999999988888888877655442 334444456788888888877544 333344444433
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=1.1e-08 Score=106.78 Aligned_cols=229 Identities=18% Similarity=0.182 Sum_probs=167.2
Q ss_pred CHHHHHHhhCC--CChHHHHHHHHHHHhccCCCcchhHhh-h------CCChHHHHHHHccCCHHHHHHHHHHHHHcccC
Q 006099 397 AIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIV-S------SGAVPSIVHVLRIGSMEARENAAATLFSLSVI 467 (661)
Q Consensus 397 ~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~~~~~k~~i~-~------~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~ 467 (661)
++..++.+|+. .+.++..+.+..+..+..++..+..++ . .....+++.++.+++.-+...|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45566666654 588899999999999877655544433 2 23688899999899999999999999999887
Q ss_pred CchhhhhhhcCCcHHHHHhhhc----CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcc------cC-CCccHH
Q 006099 468 DENKVTIGASGAIPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL------TE-PGGGMV 536 (661)
Q Consensus 468 ~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL------~~-~~~~~~ 536 (661)
...+..-...+.++.+++.+.+ .+.+....++.+|.+|...++.|..+.+.|+++.++.+| .. .+..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 6655544346677888888775 344566889999999999999999999999999999999 22 456778
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcC
Q 006099 537 DEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNG 614 (661)
Q Consensus 537 ~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~ 614 (661)
-+++.++|.|+.+++....+...+.++.|+++++. ...++-.-+++++.|++...+. ....++..|+.+.|..+....
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 89999999999999999999999999999999985 4577788899999999987664 778888888888888777653
Q ss_pred --ChHHHHHHHHH
Q 006099 615 --TDRGKRKAAQL 625 (661)
Q Consensus 615 --~~~~k~~A~~l 625 (661)
+++..+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 66666554443
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.6e-07 Score=98.50 Aligned_cols=289 Identities=18% Similarity=0.201 Sum_probs=221.6
Q ss_pred hhhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCCCc
Q 006099 352 ERTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICED 428 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~~~ 428 (661)
..++|+.|+..+.+. -.+.++.|+..|..+++ .+|..++. .++++|+..|+.+ |+++...++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 358899999999764 46889999999999986 35655554 4589999999874 89999999999999966542
Q ss_pred ------c-h----------h-HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC--chhhhhhhc-CCcHHHHHhh
Q 006099 429 ------N-K----------G-SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID--ENKVTIGAS-GAIPPLVTLL 487 (661)
Q Consensus 429 ------~-k----------~-~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~lL 487 (661)
+ + + .|...+.|..++..+...+.-+|..++..+.+|-... +.+..+... -+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 2 2 1 2235788999999998888899999999999987664 455555555 8999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccC----CCccHHHHHHHHHHHhcCCh-hhHHHHHhCCC
Q 006099 488 SEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTE----PGGGMVDEALAILAILSSHP-EGKAAIGAAEA 561 (661)
Q Consensus 488 ~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~ 561 (661)
.+....++-.++-.|..|+........++. .+++..|+.++.. ...-+++.|+.+|.||-.+. .++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 998889999999999999999888877774 7899999999976 23468899999999998765 67777888889
Q ss_pred hHHHHHHhhC---CCH------HHH----HHHHHHHHHHhcC--CH----HHHHHHHHcCCHHHHHHhhhcC--ChHHHH
Q 006099 562 VPVLVEVIGN---GSP------RNR----ENAAAVLVHLCAG--DQ----QYLAEAKELGVMGPLVDLAQNG--TDRGKR 620 (661)
Q Consensus 562 i~~Lv~lL~~---~~~------~~k----e~A~~~L~~L~~~--~~----~~~~~~~~~g~i~~L~~ll~~~--~~~~k~ 620 (661)
||.|.++|.. ++. .-| ..|+.++..+..- .+ .+...+...+++..|+.++.+. ..++..
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988862 221 112 2344455554431 11 3335677889999999998876 566777
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhh
Q 006099 621 KAAQLLERMSRFIEQQKQAQVQTE 644 (661)
Q Consensus 621 ~A~~lL~~L~~~~~~~~~~l~~~~ 644 (661)
.+.-++.++.+.+...+..+++..
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~ 359 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVT 359 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhcc
Confidence 788888888877777777777643
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.90 E-value=1.7e-07 Score=111.56 Aligned_cols=230 Identities=19% Similarity=0.169 Sum_probs=148.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
+...++.|+..|.+.++.++..|+..|..+. ..++++.|+..|++++..++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 3467789999999999999999999998764 2346788999999899999999988887764211
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-----------h--hh----hhhhcCCcHHHHHhhhcCCHHH
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-----------N--KV----TIGASGAIPPLVTLLSEGTQRG 494 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-----------~--~~----~i~~~g~i~~Lv~lL~~~~~~~ 494 (661)
...+.+...|.+.++.+|..|+.+|..+...+. . |. .++..+..+.|..++.+.++.+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 112345566666666666666666655431110 0 00 0000012233444444444444
Q ss_pred HHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCH
Q 006099 495 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP 574 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 574 (661)
+..++.+|..+.... ...++.|..++.++++.++..|+..|..+...+ ..++.++..|.+.++
T Consensus 759 R~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 759 RIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAW 821 (897)
T ss_pred HHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCCh
Confidence 444444444443211 123566777777777777777777777664321 123456677777777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 575 RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 575 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
.+|..|+.+|..+... ..++.|+.++.+.+..++..|..+|..+
T Consensus 822 ~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 7888888888766432 2568889999999999999999999886
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=4.2e-08 Score=102.53 Aligned_cols=223 Identities=19% Similarity=0.151 Sum_probs=164.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH------hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE------AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
+-.+++.+ +++.+.....+..+..+...++.....+.. .....++++++.++|..++..|+.+|..+......
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 33555555 568888999999999998877766655554 23678889999999999999999999999776544
Q ss_pred hhHhhhCCChHHHHHHHccC----CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh-----hc--CCHHHHHHH
Q 006099 430 KGSIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-----SE--GTQRGKKDA 498 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~--~~~~~~~~a 498 (661)
+..-...+.++.++.+|.+. +.+.+..++.+|.+|...+++|..+.+.|+++.|.+++ .+ .+.+.+..+
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA 218 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence 44333356778888888763 34567899999999999999999999999999999999 22 246788999
Q ss_pred HHHHHHhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChh--hHHHHHhCCChHHHHHHhhC--CC
Q 006099 499 ATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPE--GKAAIGAAEAVPVLVEVIGN--GS 573 (661)
Q Consensus 499 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~--~~~~i~~~g~i~~Lv~lL~~--~~ 573 (661)
+.+++-|+.+++....+...+.|+.|+.+++. ....+..-++++|.||...+. ....|+..|+++.+-.+... ++
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~D 298 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSD 298 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SS
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999976 677899999999999998876 77888887655555444432 35
Q ss_pred HHHHHH
Q 006099 574 PRNREN 579 (661)
Q Consensus 574 ~~~ke~ 579 (661)
++..+.
T Consensus 299 edl~ed 304 (312)
T PF03224_consen 299 EDLTED 304 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.79 E-value=9.1e-07 Score=105.34 Aligned_cols=229 Identities=22% Similarity=0.170 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-----
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE----- 427 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~----- 427 (661)
...++.|+..|.+.++.++..|+..|..+.... ...+.|...|.++|+.+|..|+.+|..+....
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 467889999999999999999999988774211 11244555555556666665555555432100
Q ss_pred ------c--chhH----hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHH
Q 006099 428 ------D--NKGS----IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGK 495 (661)
Q Consensus 428 ------~--~k~~----i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 495 (661)
+ .|.. +..-+..+.|...+.+.++++|..++.+|..+... ....++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 0 0000 00011223445555555566666666665555321 11347889999999999999
Q ss_pred HHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHH
Q 006099 496 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPR 575 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 575 (661)
..|+.+|.++.... .+++.++..|.+++..++..|+.+|..+.. ...++.|+.+|.+.++.
T Consensus 793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHH
Confidence 99999998885431 123567888988899999999999987653 23579999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 576 NRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 576 ~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
+|..|+.+|..+- .++ ...+.|...+.+.+..++..|..+|..
T Consensus 854 VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999872 222 256778888999999999999998864
No 42
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.77 E-value=4.5e-09 Score=73.06 Aligned_cols=38 Identities=42% Similarity=1.021 Sum_probs=33.2
Q ss_pred CcCCcccccCC-eecCCCccccHHHHHHHHHhCCCCCCCC
Q 006099 264 CPISLELMKDP-VIVSTGQTYERSCIEKWLEAGHRTCPKT 302 (661)
Q Consensus 264 CpIc~~~m~dP-v~~~cg~t~~r~~I~~w~~~~~~~cP~~ 302 (661)
||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999996 7899986
No 43
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.75 E-value=3.2e-09 Score=104.50 Aligned_cols=68 Identities=26% Similarity=0.488 Sum_probs=62.4
Q ss_pred CCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHH
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~ 326 (661)
+.+-++|-||+++|.-|++++||||||.-||..++. .++.||.|..+++...+..|+.+..+++.+..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 445689999999999999999999999999999998 88999999999999999999999999887654
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-06 Score=89.36 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=152.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHH
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIV 443 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 443 (661)
+.+.+.+..|+..|..++ ++-+|...+...|+.++++.++++.+..+|+.|+++|+..+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 457889999999999998 4888999999999999999999999999999999999999886 56789999999999999
Q ss_pred HHHccC-CHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhc--CCHHHHHHHHHHHHHhhcccCchHHHH-Hc
Q 006099 444 HVLRIG-SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSE--GTQRGKKDAATALFNLCIYQGNKGKAV-RA 518 (661)
Q Consensus 444 ~lL~~~-~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~iv-~~ 518 (661)
..|.+. +..++..|..++.+|-.+. +........++...|...+.+ .+...+..++..+..|.........+. ..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999876 5678899999999998876 466677777889999999998 467888999999999887655444344 56
Q ss_pred CChHHHHhcccCCCccHHHHHHHHHHHhcC
Q 006099 519 GVVPTLMHLLTEPGGGMVDEALAILAILSS 548 (661)
Q Consensus 519 g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 548 (661)
|....++.+....+.++.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777777777777788888877665544
No 45
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=7.3e-07 Score=92.17 Aligned_cols=288 Identities=16% Similarity=0.160 Sum_probs=205.1
Q ss_pred hhhHHHHHHHHHccCCHHH--HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCC-C
Q 006099 352 ERTKIEILLCKLTSGSPED--QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSIC-E 427 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~-~ 427 (661)
..+.+..|++++.+.+.+. +.+|.+.|..+. ..+|+..++..| ...++.+-+. +-++.++..+.+|.++-++ +
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 4578899999999887765 788888888876 478888988877 4444444443 4577888889999999887 4
Q ss_pred cchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC--chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006099 428 DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505 (661)
Q Consensus 428 ~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 505 (661)
+....+++.|+++.++-..+..++.+..+++-+|.|+..+. ..+.+|++..+-++|.-+..+.+.-.+..||.+.+.|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 56778889999999999999999999999999999998775 5788999999999999998888888899999999999
Q ss_pred hcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHH
Q 006099 506 CIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 585 (661)
Q Consensus 506 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~ 585 (661)
+.+.+....+-..|.+...-.++.+-++.-... .-..+..++ ...-+..|+.+|++..-+.+.-++ .
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~A---F 401 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGA---F 401 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhhhhHH---H
Confidence 998888777777776555444444433321110 001111111 113477888888855444333332 2
Q ss_pred HHhcC----CHHHH-HHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh----------------------------
Q 006099 586 HLCAG----DQQYL-AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF---------------------------- 632 (661)
Q Consensus 586 ~L~~~----~~~~~-~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~---------------------------- 632 (661)
.+|.. +.... ..+.+-|+|+.|-++..+.+.-..+-|.++|..+.+.
T Consensus 402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt~AdVQ~WvkkIGFee 481 (832)
T KOG3678|consen 402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWTCADVQYWVKKIGFEE 481 (832)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcchHHHHHHHHHhCHHH
Confidence 23321 11222 3345669999999999988887888888999887431
Q ss_pred -HHHHHHHHhhhhhHHHhhhhccC
Q 006099 633 -IEQQKQAQVQTESQSQIQEARLP 655 (661)
Q Consensus 633 -~~~~~~~l~~~~~~~~l~~~~~~ 655 (661)
-+...+.+.+-..+-+|+|.+|.
T Consensus 482 Y~EkFakQ~VDGDLLLqLTEndLk 505 (832)
T KOG3678|consen 482 YVEKFAKQMVDGDLLLQLTENDLK 505 (832)
T ss_pred HHHHHHHHhccchHHHhhhhhhhh
Confidence 13455556666666777777654
No 46
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.71 E-value=1.4e-06 Score=89.68 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=200.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhC-CHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHh
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAG-AIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..+.+..|..+++..+..+.+.|..++..+...- ...+.. ....|...+++ .+.+....|+.+|-.+...++.|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 4678888888899888888888888875332211 111111 12233344444 56677778889999999999999999
Q ss_pred hhCCChHHHHHHHc-cC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCC-HHHHHHHHHHHHHhhcccC
Q 006099 434 VSSGAVPSIVHVLR-IG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~-~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~ 510 (661)
+.++++..++..+. +. +..++.+.+.+++-|+.++.....+...+.|+.|.+++++.. +.+.+.++.++.|+....+
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999994 33 689999999999999999888888866699999999999864 6788889999999998774
Q ss_pred c-------hHHHHHcCChHHHHhcccC--CCccHHHHHHHH-------HHHhcCChh-----------------------
Q 006099 511 N-------KGKAVRAGVVPTLMHLLTE--PGGGMVDEALAI-------LAILSSHPE----------------------- 551 (661)
Q Consensus 511 ~-------~~~iv~~g~v~~Lv~lL~~--~~~~~~~~al~~-------L~~L~~~~~----------------------- 551 (661)
. ...|+..++.+.+-.+-.. .|.++....-.+ ...|++.++
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 2 2355655555544444333 455544433222 223444322
Q ss_pred -hHHHHHhC--CChHHHHHHhhCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHH
Q 006099 552 -GKAAIGAA--EAVPVLVEVIGNGS-PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 627 (661)
Q Consensus 552 -~~~~i~~~--g~i~~Lv~lL~~~~-~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 627 (661)
+...+-+. ..+..|+.+|+..+ |..-.-|+.=+.......|+....+.+.|+-..++.++.+.+++++-.|..++.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22223222 36888999998655 777778888899999999999999999999999999999999999999998887
Q ss_pred HHH
Q 006099 628 RMS 630 (661)
Q Consensus 628 ~L~ 630 (661)
.|-
T Consensus 435 ~lm 437 (442)
T KOG2759|consen 435 KLM 437 (442)
T ss_pred HHH
Confidence 653
No 47
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1e-08 Score=97.23 Aligned_cols=59 Identities=31% Similarity=0.671 Sum_probs=52.6
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHH--hCCCCCCCCCCCCcCCCCccchhh
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE--AGHRTCPKTQQTLTSTAVTPNYVL 317 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~l~~n~~l 317 (661)
-..|-|-||++.-+|||++.|||-||..||.+|+. .+...||+|+..++...++|-+.-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 45799999999999999999999999999999998 344678999999999999887654
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.64 E-value=1.6e-08 Score=70.98 Aligned_cols=36 Identities=28% Similarity=0.812 Sum_probs=23.2
Q ss_pred CcCCcccccC----CeecCCCccccHHHHHHHHHhC---CCCCC
Q 006099 264 CPISLELMKD----PVIVSTGQTYERSCIEKWLEAG---HRTCP 300 (661)
Q Consensus 264 CpIc~~~m~d----Pv~~~cg~t~~r~~I~~w~~~~---~~~cP 300 (661)
||||.+ |.+ |++++|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999854 45676
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.2e-06 Score=85.27 Aligned_cols=180 Identities=19% Similarity=0.184 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-hHHHHHcCChHHHHhcc
Q 006099 450 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLL 528 (661)
Q Consensus 450 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~iv~~g~v~~Lv~lL 528 (661)
+.+-++.|..-|..+...-+|...+...|++.+++..+.+.+..++..|+++|...+.+.+. ...+++.|+.+.|+..|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 67788888888888888888899999999999999999999999999999999999988665 45677999999999999
Q ss_pred cC-CCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 006099 529 TE-PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM 604 (661)
Q Consensus 529 ~~-~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i 604 (661)
.. ++..++..|+.++..|-.+ +.+...+...++...|..+|++ .+.+.+..|+..+..|..........+...|+.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 76 5566778999999988765 4777889999999999999998 568889999999999998877777788888899
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 605 GPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 605 ~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
..+..+....+..+.+.|...+-.+
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHH
Confidence 9999999888888888877655433
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=2.1e-06 Score=96.76 Aligned_cols=255 Identities=20% Similarity=0.190 Sum_probs=168.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
-.+..+.+.|.++|+..+.-|+..|.++. +++-... .++.+.+++.++++.+|..|+.++..+..... ..+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~ 149 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLV 149 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHH
Confidence 46677888888999999999999999987 3333222 47888899999999999999999998865421 122
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHc-ccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSL-SVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
... .++.+..+|.+.++.++..|+.++..+ ...+.+. -.-...+..|.+++...++-.+..++..|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 222 588899999888899999999999888 2111111 111234455555556677777778888888776654333
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
..- ..+++.+..++.+.+..+.-.|+.++..+...+. .-..+++.|..++.+.++.++..++..|..++...+
T Consensus 227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 211 4566677777777777777778888877776665 222456778888887777788888888888877663
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.... .....+..+..+.+..+|..+..+|..+...
T Consensus 300 ~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 300 PAVF-----NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hhhh-----hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 2221 1122222233366777777777777777653
No 51
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=5.2e-08 Score=68.63 Aligned_cols=39 Identities=46% Similarity=1.109 Sum_probs=36.3
Q ss_pred CcCCcccccCCe-ecCCCccccHHHHHHHHH-hCCCCCCCC
Q 006099 264 CPISLELMKDPV-IVSTGQTYERSCIEKWLE-AGHRTCPKT 302 (661)
Q Consensus 264 CpIc~~~m~dPv-~~~cg~t~~r~~I~~w~~-~~~~~cP~~ 302 (661)
||||++.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 677889986
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.52 E-value=2.4e-05 Score=83.59 Aligned_cols=287 Identities=14% Similarity=0.091 Sum_probs=195.6
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHHHHHhhCCCChHHHHHHHHHHHhccCCC
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE 427 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~ 427 (661)
..+..++..+.. .+.+.....+.-+..+...++.-...+.+. ....+++.+|..+|.-++..|+.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 566777777765 556777777778888877666555555554 45677788999999999999999999985432
Q ss_pred -cchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC--CHHHHHHHHHHHH
Q 006099 428 -DNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG--TQRGKKDAATALF 503 (661)
Q Consensus 428 -~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~ 503 (661)
.+.......-.+..+...|+++ +...+..++.+|..|...+++|..+.+.++++.|+++|+.. +.+....++-+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 1111100111233455566554 46788889999999999999999999899999999999864 4578899999999
Q ss_pred HhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCCh-------hhHHHHHhCCChHHHHHHhhC---C
Q 006099 504 NLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHP-------EGKAAIGAAEAVPVLVEVIGN---G 572 (661)
Q Consensus 504 nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~-------~~~~~i~~~g~i~~Lv~lL~~---~ 572 (661)
-|+.+++....+...+.|+.|+.+++. ....+..-++.+|.||...+ .....++..|+ +.++..|.. +
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCC
Confidence 999998877777788999999999976 67788899999999999854 23345566555 455555543 3
Q ss_pred CHHHHHHHHH---HH----HHHhc--------------C-----CH----HHHHHHHHcC--CHHHHHHhhh-cCChHHH
Q 006099 573 SPRNRENAAA---VL----VHLCA--------------G-----DQ----QYLAEAKELG--VMGPLVDLAQ-NGTDRGK 619 (661)
Q Consensus 573 ~~~~ke~A~~---~L----~~L~~--------------~-----~~----~~~~~~~~~g--~i~~L~~ll~-~~~~~~k 619 (661)
++++.+.--. .| -.+++ - ++ ++...+.+.+ ++..|+.++. +.++.+-
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l 371 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL 371 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence 4444332111 11 11111 0 11 3444444443 5788889985 4466666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHh
Q 006099 620 RKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 620 ~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
.-|+.=+..+.++.++.+..+.
T Consensus 372 aVAc~Dige~vr~~P~gr~i~~ 393 (429)
T cd00256 372 AVACHDIGEYVRHYPRGKDVVE 393 (429)
T ss_pred ehhhhhHHHHHHHCccHHHHHH
Confidence 6666667777766655444443
No 53
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.49 E-value=1e-07 Score=93.11 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=40.7
Q ss_pred CCCccCcCCcccccCC--------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDP--------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP--------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.++..||||++.+.+| ++.+|||+||+.||.+|+. ...+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 3467899999987764 4568999999999999998 6779999998775
No 54
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.48 E-value=5.4e-06 Score=93.52 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=185.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhc-cCCCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL-SICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nL-s~~~~~k~~ 432 (661)
..++.+.+.+.++++.+|.+|+.++..+.+.+++. +... +++.+..+|.+.|+.++..|+.++..+ ..+....
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-- 187 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-- 187 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--
Confidence 46677888888999999999999999998766553 2222 689999999999999999999999999 2111111
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
-.-...+..+.+++...++-.+..++.+|..++..+.....- ...++.+..++.+.++.+...++.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 112334455555566778889999999999887665432211 4578888888888888899999999988877655
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCC
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~ 591 (661)
.-..+++.|..+|.+++..++-.++..|..++... ... +. .....+..+. +.++.+|..++.+|..++..
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~-v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~- 334 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPA-VF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE- 334 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHH-HG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H-
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chh-hh--hhhhhhheecCCCChhHHHHHHHHHhhcccc-
Confidence 44567889999999888889999999999998765 222 22 2333344555 77889999999999999863
Q ss_pred HHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHhhH
Q 006099 592 QQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.+... +++.|...+. .++...++.+...+..++...
T Consensus 335 -~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 335 -SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred -cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 34444 4667777774 447778888888888887655
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.7e-08 Score=93.60 Aligned_cols=54 Identities=22% Similarity=0.540 Sum_probs=47.3
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 311 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 311 (661)
..+..++|.+|++-+.+|-.+||||.||..||..|.. ....||.||.++++..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~-ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCS-EKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHc-cccCCCcccccCCCcce
Confidence 4455699999999999999999999999999999998 44569999998886654
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.48 E-value=9.3e-08 Score=70.50 Aligned_cols=47 Identities=30% Similarity=0.691 Sum_probs=41.1
Q ss_pred CCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
+++.|+||++...++++.+|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 35789999999999999999999 99999999999 7789999999875
No 57
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.46 E-value=7.5e-08 Score=93.00 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~ 326 (661)
..-++|-||.+.++-|++++||||||.-||..++. .++.||.|+.......+..+..++..++.+..
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 34478999999999999999999999999999998 77899999999888888888888888777654
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1e-07 Score=86.23 Aligned_cols=53 Identities=25% Similarity=0.653 Sum_probs=45.2
Q ss_pred CCccCcCCcccccC--CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc
Q 006099 260 DDFRCPISLELMKD--PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 260 ~~f~CpIc~~~m~d--Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~ 313 (661)
.-|.||||++-+.. ||.+.|||.||+.||...+. ....||.|++.+++..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhee
Confidence 45999999998864 56689999999999999998 5678999999998777654
No 59
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.46 E-value=1.2e-06 Score=76.33 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=120.6
Q ss_pred CChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHH
Q 006099 437 GAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 515 (661)
Q Consensus 437 g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 515 (661)
+.+..|+.-... .+.++++...+-|.|++.++.|...+.+.+++...+.-|...+...++.++..|+|+|....|...|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 445566665554 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHH
Q 006099 516 VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 585 (661)
Q Consensus 516 v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~ 585 (661)
.++++++.++..++++....+..|+.++..|+... ..+..+....++..+.+.-.+.+.+.+--|-..|-
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999998766 44566665555555544443444444444444443
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.41 E-value=9.1e-08 Score=71.87 Aligned_cols=44 Identities=32% Similarity=0.780 Sum_probs=31.7
Q ss_pred CCccCcCCcccccCCee-cCCCccccHHHHHHHHH-hCCCCCCCCC
Q 006099 260 DDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLE-AGHRTCPKTQ 303 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~-~~~~~cP~~~ 303 (661)
-.++|||++..|.+||. ..|||+|++.+|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 35899999999999998 48999999999999994 4557899865
No 61
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.40 E-value=7.3e-08 Score=72.21 Aligned_cols=59 Identities=25% Similarity=0.510 Sum_probs=33.1
Q ss_pred CCccCcCCcccccCCee-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhH
Q 006099 260 DDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLI 321 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i 321 (661)
+-++|++|.++|++||. ..|.|.||+.||..-+. ..||+|..+....++..|..+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 35789999999999996 58999999999977543 3599999999888999998887765
No 62
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.2e-05 Score=86.94 Aligned_cols=244 Identities=17% Similarity=0.136 Sum_probs=183.5
Q ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHhc-cC-CCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccC-Cchhh
Q 006099 398 IPLLVGLLSTP-DSRTQEHAVTALLNL-SI-CEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVI-DENKV 472 (661)
Q Consensus 398 i~~Lv~lL~s~-~~~i~~~A~~~L~nL-s~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~-~~~~~ 472 (661)
+..|+.=|... |+..|..|+.-|+.+ +. +++.-.-+.-.-.+|.|+.+|+.. +.++...|+++|.+|+.. ++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45566656654 888888887777764 33 333344444566899999999876 789999999999999976 56777
Q ss_pred hhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC--
Q 006099 473 TIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-- 549 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-- 549 (661)
.++..++||.|+.-|..- -.++.+.++.||-.|+..++. .++++|++...+.+|.=-...++..|+++.+|.|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 788889999999988764 467889999999999986643 467899999998888655678899999999999974
Q ss_pred hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHhhhcC----ChHHHHHH
Q 006099 550 PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA---GDQQYLAEAKELGVMGPLVDLAQNG----TDRGKRKA 622 (661)
Q Consensus 550 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ll~~~----~~~~k~~A 622 (661)
++.-..+++ ++|.|..+|...+...-+.++.++..++. +++.....+...|.+....+|+.-. +..+.-..
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 344455554 79999999998888888988888888763 5567777888888888888887543 34455666
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhh
Q 006099 623 AQLLERMSRFIEQQKQAQVQTES 645 (661)
Q Consensus 623 ~~lL~~L~~~~~~~~~~l~~~~~ 645 (661)
..+|..|+...+...+.+..-+.
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I 427 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDI 427 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhH
Confidence 67777777665544444444333
No 63
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.35 E-value=1.5e-07 Score=67.28 Aligned_cols=40 Identities=38% Similarity=0.926 Sum_probs=33.5
Q ss_pred cCcCCccccc---CCeecCCCccccHHHHHHHHHhCCCCCCCCC
Q 006099 263 RCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQ 303 (661)
Q Consensus 263 ~CpIc~~~m~---dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~ 303 (661)
.||||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999884 4556899999999999999995 56999985
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=2.3e-06 Score=74.50 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=129.1
Q ss_pred hhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH
Q 006099 475 GASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~ 553 (661)
...+.+..|+.-..+. +.+.++....-|+|.+.++-|-..+.+.+++...+..|..++..+++.+++.|.|+|-.+.+.
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 3346677777776654 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHH
Q 006099 554 AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 627 (661)
Q Consensus 554 ~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 627 (661)
..|.+.+++|.++..+.++...+-..|+..+..||..+.....++....++..+.....+.+.+.+.-|...|.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998888888888999999999988888888887777777777765555555555554444
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=8.6e-05 Score=73.84 Aligned_cols=269 Identities=17% Similarity=0.163 Sum_probs=183.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
...++..+.+.++.++..|+..+..++.. ..+.+.. +.-.++.+.++++..++ -+.|+++|.|++.+..-+..++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45789999999999999999999888754 3333332 23468889999988766 5678999999999988888887
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc------CCcHHHHHhhhcCCH---HHHHHHHHHHHHh
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS------GAIPPLVTLLSEGTQ---RGKKDAATALFNL 505 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~------g~i~~Lv~lL~~~~~---~~~~~a~~aL~nL 505 (661)
.. .+..++.++.+.....-...+.+|.||+..+.....+... .++..++..+-+.+. .-....+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 76 8888888887775567778899999999987654433221 233333333332221 2234567788999
Q ss_pred hcccCchHHHHHcCCh--HHHHhcccCCCccHH-HHHHHHHHHhcCChhhHHHHHhC--CChHHH---------------
Q 006099 506 CIYQGNKGKAVRAGVV--PTLMHLLTEPGGGMV-DEALAILAILSSHPEGKAAIGAA--EAVPVL--------------- 565 (661)
Q Consensus 506 ~~~~~~~~~iv~~g~v--~~Lv~lL~~~~~~~~-~~al~~L~~L~~~~~~~~~i~~~--g~i~~L--------------- 565 (661)
+....+|..+.....+ +.++.+-. .+..++ ...+++|.|.|........+... ..+|.|
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999888877755433 23444333 333333 34667888888766555544432 122222
Q ss_pred ------HHHhh-----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006099 566 ------VEVIG-----NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSR 631 (661)
Q Consensus 566 ------v~lL~-----~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~ 631 (661)
+++|. ..+|.++..-+.+|..||... ..+..+...|+.+.|-++=... ++++++..-.+...+.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 24442 245788999999999999865 4777788888888888776654 67777777777777766
No 66
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.30 E-value=7.1e-07 Score=63.91 Aligned_cols=43 Identities=44% Similarity=1.049 Sum_probs=38.4
Q ss_pred cCcCCcccccCCeecC-CCccccHHHHHHHHHhCCCCCCCCCCC
Q 006099 263 RCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQT 305 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~~~~~cP~~~~~ 305 (661)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999768889999875
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.25 E-value=4.3e-05 Score=82.99 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=157.3
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHH
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIV 443 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 443 (661)
..|.+....|+.++..++..-..-|..+....++.+|+++|..++..++..++.+|.|+..+ ...|..+...|+|+.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45777888888899988875555566666778999999999999999999999999999876 66799999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcccCCchhhh--hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH-HHHHc--
Q 006099 444 HVLRIGSMEARENAAATLFSLSVIDENKVT--IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG-KAVRA-- 518 (661)
Q Consensus 444 ~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~--i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~iv~~-- 518 (661)
.++.+.+..++.++.|+|.+++.+.+...+ ....=....++.+..+.+..+++.+...|.||.-+...-. .+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 999999999999999999999998765433 3333455678888889999999999999999976643332 23321
Q ss_pred CChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh--------CCCHHHHHHHHHHHHHHhc
Q 006099 519 GVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG--------NGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 519 g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--------~~~~~~ke~A~~~L~~L~~ 589 (661)
..+......++- +...+.......+.++...-++...-+..|..+.++-.-. +.......+++|.+.++..
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence 222222222221 2223333444444444443333333233344444432221 2335567788899999876
Q ss_pred CC
Q 006099 590 GD 591 (661)
Q Consensus 590 ~~ 591 (661)
..
T Consensus 628 ~~ 629 (678)
T KOG1293|consen 628 TD 629 (678)
T ss_pred CC
Confidence 43
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00038 Score=77.00 Aligned_cols=287 Identities=18% Similarity=0.172 Sum_probs=207.9
Q ss_pred hHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhCh------hhH------HH-----HHHhCCHHHHHHhhCCCChHHHH
Q 006099 354 TKIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNA------DNR------VA-----IAEAGAIPLLVGLLSTPDSRTQE 414 (661)
Q Consensus 354 ~~i~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~------~~r------~~-----i~~~g~i~~Lv~lL~s~~~~i~~ 414 (661)
.+++.|++.|.. .|++....++..+..+..+++ +.+ .+ |...+.|..|+.++...|-.+|.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 567889999986 578899999999988876542 111 12 33458999999999999999999
Q ss_pred HHHHHHHhccCC--CcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcC
Q 006099 415 HAVTALLNLSIC--EDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEG 490 (661)
Q Consensus 415 ~A~~~L~nLs~~--~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~ 490 (661)
.|+..|.++-.. .+.+..++ ..-+|..++.+|.+...-+|..++-.|..|..+.....+++.- +++..|..++.+.
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998554 34566555 7889999999999888889999999999999988887777775 9999999999864
Q ss_pred C----HHHHHHHHHHHHHhhcccC-chHHHHHcCChHHHHhcccC---CCcc----------HHHHHHHHHHHhcCCh--
Q 006099 491 T----QRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLLTE---PGGG----------MVDEALAILAILSSHP-- 550 (661)
Q Consensus 491 ~----~~~~~~a~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~---~~~~----------~~~~al~~L~~L~~~~-- 550 (661)
. .-+..+++..|-||..+.. |...+.+.+.||.|.++|.. ++.+ -...++.++..|....
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt 300 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT 300 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 2457899999999988765 55566688899999988754 3321 1344666666665421
Q ss_pred -----hhHHHHHhCCChHHHHHHhhCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC------HHH----HHHhhh-
Q 006099 551 -----EGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELGV------MGP----LVDLAQ- 612 (661)
Q Consensus 551 -----~~~~~i~~~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~------i~~----L~~ll~- 612 (661)
.++..+...+++..|..++.+. ...++..+.-++.++..++..+...+.+..+ .+. ++.+..
T Consensus 301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne 380 (970)
T KOG0946|consen 301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE 380 (970)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence 2335667778999999988764 3567888888999998888766666654221 222 223332
Q ss_pred cCChHHHHHHHHHHHHHH-hhHHHHHHHH
Q 006099 613 NGTDRGKRKAAQLLERMS-RFIEQQKQAQ 640 (661)
Q Consensus 613 ~~~~~~k~~A~~lL~~L~-~~~~~~~~~l 640 (661)
..+...|-....+++.+- +..+.+++.+
T Consensus 381 ~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 381 KQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 236677777777777554 3334444433
No 69
>PTZ00429 beta-adaptin; Provisional
Probab=98.23 E-value=0.00022 Score=82.03 Aligned_cols=259 Identities=15% Similarity=0.079 Sum_probs=179.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
......+..+.+.+.+.++-..-.|.++++.+++.... +|..|.+-+.++|+.+|-.|+++|.++-.. .
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~- 136 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----S- 136 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----H-
Confidence 35666777888888888877777777777655553211 467888888999999999999999877431 1
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 513 (661)
+-.-.+..+.+.|.+.++-+|..|+-++..+...++ ..+...|.++.|.++|.+.++.+..+|+.+|..+....+...
T Consensus 137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 112345667778888899999999999999865443 344456899999999999999999999999999987655432
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-H
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-Q 592 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~-~ 592 (661)
. ...+.+..|+..|..-++..+...+.+|.... |...... ...+..+...|++.++.+...|+.++.++.... +
T Consensus 215 ~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 E-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred H-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 2 23456677777776667777777777775432 2222111 235677788888889999999999999887542 2
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.....+. ..+.++|+.++ ++++.++--+...|..+...
T Consensus 290 ~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHH
Confidence 2221111 12335566663 45667777777666666543
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00017 Score=83.23 Aligned_cols=277 Identities=17% Similarity=0.175 Sum_probs=162.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhC----CCChHHHHHHHHHHHhccCCCc-
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLS----TPDSRTQEHAVTALLNLSICED- 428 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~----s~~~~i~~~A~~~L~nLs~~~~- 428 (661)
....+.+.+.+.+..++..|++++..++...+.++...... ..+|.++..+. .+|.+.-..++.+|-.++....
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 33444455555555599999999998886655444443332 45676766654 4555555566666666654321
Q ss_pred c-hhHhhhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhh-------------------------------
Q 006099 429 N-KGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTI------------------------------- 474 (661)
Q Consensus 429 ~-k~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i------------------------------- 474 (661)
. +..+ ..++.....+.++. +..+|..|+..|..++..-....+.
T Consensus 240 ~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 240 LLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred HHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 1 1111 12233333333332 3445555555554444331111100
Q ss_pred -----------------------hhcC----CcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhc
Q 006099 475 -----------------------GASG----AIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHL 527 (661)
Q Consensus 475 -----------------------~~~g----~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l 527 (661)
+-.- .++.+-.++.+.+..-+..++.+|..++........-.=..+++..+..
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 0011 2233333444555556666666666555432211111113467778888
Q ss_pred ccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 006099 528 LTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMG 605 (661)
Q Consensus 528 L~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~ 605 (661)
|.++++.++-.|+.+++.++.+= ..-+.-....+++.|+..+.+ ++++++.+|+.+|.|+....+.....=.=.+++.
T Consensus 398 l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999999998753 233333444577888888876 5689999999999998776553322222224555
Q ss_pred -HHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 606 -PLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 606 -~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.|..+..++++.+++.++.+|...+...
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 6667778999999999999999988655
No 71
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.18 E-value=1.8e-06 Score=59.60 Aligned_cols=39 Identities=56% Similarity=1.199 Sum_probs=35.9
Q ss_pred CcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCC
Q 006099 264 CPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKT 302 (661)
Q Consensus 264 CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~ 302 (661)
||||++...+|++++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998677789976
No 72
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.17 E-value=0.00012 Score=79.60 Aligned_cols=152 Identities=18% Similarity=0.136 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC-chHHHHHcCChHHHHh
Q 006099 449 GSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMH 526 (661)
Q Consensus 449 ~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~ 526 (661)
.+...+..|+-++-+++.. +.-+...-...++.+|++++..++..+...++++|+||...-. -+..+++.|+|..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3555666666666665543 1223334455899999999999999999999999999987654 5789999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCChhhHH--HHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006099 527 LLTEPGGGMVDEALAILAILSSHPEGKA--AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE 600 (661)
Q Consensus 527 lL~~~~~~~~~~al~~L~~L~~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~ 600 (661)
++.+.+..++..++++|.++..+.+... +....=....++.+..+.++.++|.+...|.|+..+..+.+..+.+
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999999998775543 3333234556777888899999999999999999887666655544
No 73
>PHA02926 zinc finger-like protein; Provisional
Probab=98.17 E-value=1.3e-06 Score=82.24 Aligned_cols=50 Identities=18% Similarity=0.490 Sum_probs=40.3
Q ss_pred CCCCccCcCCcccccC---------CeecCCCccccHHHHHHHHHhC-----CCCCCCCCCCCc
Q 006099 258 IPDDFRCPISLELMKD---------PVIVSTGQTYERSCIEKWLEAG-----HRTCPKTQQTLT 307 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~d---------Pv~~~cg~t~~r~~I~~w~~~~-----~~~cP~~~~~l~ 307 (661)
..++..|+||++...+ ++..+|+|+||..||.+|.... ..+||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3456889999998644 3566999999999999999842 356999999876
No 74
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.6e-06 Score=91.21 Aligned_cols=70 Identities=27% Similarity=0.672 Sum_probs=59.5
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcC
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANG 329 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (661)
...+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+.+++......+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 4457899999999999999999999999999999998 7789999996 322 67789999988888876543
No 75
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=4.9e-05 Score=82.30 Aligned_cols=270 Identities=15% Similarity=0.150 Sum_probs=179.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH-H---hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA-E---AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~-~---~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
..++.|.+.|.+.+...+.-|..+|.+++..+.+--..=. . .-.+|.++++.++.++.+|..|+.++-..-.. .+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-Cc
Confidence 6789999999999989999999999999976544322211 1 13689999999999999999999987554332 22
Q ss_pred hhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 430 KGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 430 k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+..+. -...++.+..+-.+.++++|.+.+.+|..|-.....+-.=.-.+.++.++....+.+..+...||.....++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 23222 23455556666566689999999999999875544332222237888888888888888999999998888887
Q ss_pred cCchHHHHH--cCChHHHHhcccCCC------------------------------------------------------
Q 006099 509 QGNKGKAVR--AGVVPTLMHLLTEPG------------------------------------------------------ 532 (661)
Q Consensus 509 ~~~~~~iv~--~g~v~~Lv~lL~~~~------------------------------------------------------ 532 (661)
+-.+..+.. ...+|.|++-+.-.+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 744433332 356666665332111
Q ss_pred --ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh----hCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHH
Q 006099 533 --GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI----GNGSPRNRENAAAVLVHLCAGDQQYL-AEAKELGVMG 605 (661)
Q Consensus 533 --~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~ke~A~~~L~~L~~~~~~~~-~~~~~~g~i~ 605 (661)
-.+++..+++|--|+. +....+++.++.+| .+....+||.++-+|++++.+.-... ..+ ...+|
T Consensus 367 ~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip 437 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL--PELIP 437 (885)
T ss_pred ccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch--HHHHH
Confidence 0122222222222221 11223444444444 45667889999999999987532111 111 12688
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 606 PLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 606 ~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.|+.++.+..+-+|....|.|...+.+-
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 8889998888999999999998887665
No 76
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.6e-05 Score=84.02 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=49.6
Q ss_pred CCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 260 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
+-++||.|..=+.|-|++.|||.||..||++........||.|+..|...++.+-
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 4578999999999999999999999999999999889999999999987776553
No 77
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=8.9e-05 Score=85.43 Aligned_cols=233 Identities=18% Similarity=0.230 Sum_probs=154.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~ 432 (661)
-.++.+-..|.|.+|..+..|+.+|..++.+..+.-.... ...++..+..|+++++.+|..|+.+++.++.+ ...-..
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 3567777888899999999999999999876555433321 24678888899999999999999999999987 222233
Q ss_pred hhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhc--CCcH-HHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 433 IVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGAS--GAIP-PLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~-~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
-...-.++.|+..+.+. ++.++.+|+.++.|++..-. +..+..- +.+. .+..++.++++.+++.++++|+..+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33566778899999876 78999999999999986533 2222111 4444 333345577899999999999999987
Q ss_pred cCchHHHHHcCChHHHHhcccCCC-ccHHHH---HHHHHHHhcCChhhHHHHHhC--CChHHHHHH---hhCCCHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPG-GGMVDE---ALAILAILSSHPEGKAAIGAA--EAVPVLVEV---IGNGSPRNREN 579 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~-~~~~~~---al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~l---L~~~~~~~ke~ 579 (661)
.+.+-.=.-.-.+|.|..+|.+.+ .+.+.. .+.++..++ ..-|++.+... .++..+..+ -...+...+.+
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 666544344557788888887643 333333 333332221 22334444321 234444443 22234556677
Q ss_pred HHHHHHHHhc
Q 006099 580 AAAVLVHLCA 589 (661)
Q Consensus 580 A~~~L~~L~~ 589 (661)
......++|.
T Consensus 585 ~~~~warmc~ 594 (1075)
T KOG2171|consen 585 MIAFWARMCR 594 (1075)
T ss_pred HHHHHHHHHH
Confidence 6666677775
No 78
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.06 E-value=0.0002 Score=74.20 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=168.6
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CChHHHHHHHHHHHhccCCCcchhH
Q 006099 356 IEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 356 i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
...|...+++ .+.+...-|+++|..+.+ -+++|..++.++++..++..|.+ .+..+|.+.+.+++-|+.++...+.
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~ 236 (442)
T KOG2759|consen 158 KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK 236 (442)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence 3445555555 566777788889999986 78999999999999999998843 4788999999999999999888888
Q ss_pred hhhCCChHHHHHHHccCC-HHHHHHHHHHHHHcccCCc---hhhhhhh---cCCcHHHHHhhhcC---CHHHHHHHHH--
Q 006099 433 IVSSGAVPSIVHVLRIGS-MEARENAAATLFSLSVIDE---NKVTIGA---SGAIPPLVTLLSEG---TQRGKKDAAT-- 500 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~---~~~~i~~---~g~i~~Lv~lL~~~---~~~~~~~a~~-- 500 (661)
+...+.|+.|..+++... +.+.+-+++++.|+....+ .+..+.. .+.++.-++.|..+ ++++..+.-.
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 878899999999998864 5677788899999876653 2222222 25556666666653 4444332211
Q ss_pred -----HHHHhhccc------------------------CchHHHHH--cCChHHHHhcccC-CCccHHHHHHHHHHHh-c
Q 006099 501 -----ALFNLCIYQ------------------------GNKGKAVR--AGVVPTLMHLLTE-PGGGMVDEALAILAIL-S 547 (661)
Q Consensus 501 -----aL~nL~~~~------------------------~~~~~iv~--~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L-~ 547 (661)
-...|++.+ +|..++-+ ..++..|+.+|.. .++.+..-|+.=++.. -
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 122333322 23333433 2467889999976 4466655566555544 4
Q ss_pred CChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 548 SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 548 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
.+|+|+..+...|+=..++++|.+.+|++|-+|..++..|-.+
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999888776543
No 79
>PTZ00429 beta-adaptin; Provisional
Probab=98.05 E-value=0.00094 Score=76.92 Aligned_cols=255 Identities=15% Similarity=0.083 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH-HHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRL-LAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~-L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
+|-+..|-..|.+.+...+..|++.+-. ++.+ .+.. .+.+..++++.+.|.++++-..-.|.+.+.....-.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 3567778888888888888888875544 4443 2221 245677888999999999988888888876432222
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
.+ ++..+.+=+.+.++.+|..|+++|.++-... .-.-.++.+.+.+.+.++.+++.|+.++..+-...+.
T Consensus 104 lL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~------i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 104 LL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS------VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 22 4556667777889999999999999885321 1112456677778888999999999999999765442
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
.+...|.++.|..+|.+.++.++..|+.+|..+.......-. ...+.+..|+..|..-+++.+...+.+|....-.+
T Consensus 174 --lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 174 --LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred --cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Confidence 234568889999999999999999999999999765432221 22345667777777777888887776664432222
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 592 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.... ..++..+...+++.++.+.-.|..++..+...
T Consensus 251 ~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 KESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred cHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1111 13566667777777888888888877777643
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.04 E-value=0.0011 Score=70.45 Aligned_cols=274 Identities=18% Similarity=0.205 Sum_probs=189.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCCCcchhH
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
..+.+...+-+++.+++-.+.+.+|.+.. +...-..+.+.+.=-.++.-|..+ +..-+++|+..+..+.....+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 34445545556668889899999999885 666677777777655666666553 455677898888776544333222
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
...|.+..|+.+..+.+...+..|..+|..|+..++ ..+...|++..|++.+-++..+.....+.++..+..++..|
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 366788999999988888999999999999987643 45667899999999999987778888899999999999888
Q ss_pred HHHHHcCChHHHHhcccCC-------Cc--cHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHHhhCCCHHHHHHHH
Q 006099 513 GKAVRAGVVPTLMHLLTEP-------GG--GMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAA 581 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~-------~~--~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~ke~A~ 581 (661)
..+...--+..++.-+.+. +. +....+..++..+-.+-.|--.+... .++..|+..|..+++.+|+...
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 7666433344444444332 11 22333444444333333333333222 4788888888888888888777
Q ss_pred HHHHHHhc-------------------CC-------------------------H----HH----HHHHHHcCCHHHHHH
Q 006099 582 AVLVHLCA-------------------GD-------------------------Q----QY----LAEAKELGVMGPLVD 609 (661)
Q Consensus 582 ~~L~~L~~-------------------~~-------------------------~----~~----~~~~~~~g~i~~L~~ 609 (661)
.++..+-. +. . .+ ...+++.|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 77765531 00 0 01 123368999999999
Q ss_pred hhhcC-ChHHHHHHHHHHHHHHhh
Q 006099 610 LAQNG-TDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 610 ll~~~-~~~~k~~A~~lL~~L~~~ 632 (661)
++.+. ++....+|.-+|..+-..
T Consensus 342 li~~~~d~~l~~KAtlLL~elL~l 365 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELLHL 365 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHH
Confidence 99987 889999999999877543
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.0002 Score=80.04 Aligned_cols=234 Identities=17% Similarity=0.164 Sum_probs=167.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccCCCc----chhHhhhCCChHHHHHHHccC-------CHHHHHHHHHHHHHccc
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSICED----NKGSIVSSGAVPSIVHVLRIG-------SMEARENAAATLFSLSV 466 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~----~k~~i~~~g~i~~Lv~lL~~~-------~~e~~~~a~~~L~~Ls~ 466 (661)
+...+.+|++.+..-+-.++..+.++....+ .+..|.++=+.+.+-++|+++ ....+.-|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5667788999886666677777777866533 244577887889999999873 35677889999999998
Q ss_pred CCchhhhhhhcCCcHHHHHhhhcCCH-HHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHH
Q 006099 467 IDENKVTIGASGAIPPLVTLLSEGTQ-RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 545 (661)
Q Consensus 467 ~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~ 545 (661)
.++....=--.+-||.|++.+...+. .+...++.+|..++.+++++..+++.|+++.|.+.+.+ .+...+.|+.+|.+
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLN 165 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 66543222223679999999998877 89999999999999999999999999999999999976 56678999999998
Q ss_pred hcCChhhHHHHHh----CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHhhhcC-C
Q 006099 546 LSSHPEGKAAIGA----AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQY-LAEA----KELGVMGPLVDLAQNG-T 615 (661)
Q Consensus 546 L~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~-~~~~----~~~g~i~~L~~ll~~~-~ 615 (661)
++........--. ...++.+...........+-.++..|.++-...+.. .... +-..+...|..++++. +
T Consensus 166 Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 166 LLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 8775432111111 123455555555555566788888888887665311 1111 2223455566666655 7
Q ss_pred hHHHHHHHHHHHHHHhh
Q 006099 616 DRGKRKAAQLLERMSRF 632 (661)
Q Consensus 616 ~~~k~~A~~lL~~L~~~ 632 (661)
+..|..|..+...|.+.
T Consensus 246 ~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 246 PSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888877777654
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=98.03 E-value=0.00027 Score=78.96 Aligned_cols=234 Identities=20% Similarity=0.199 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhh---HHHHHHhCCHHHHHHhhCCC-------ChHHHHHHHHHHHh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADN---RVAIAEAGAIPLLVGLLSTP-------DSRTQEHAVTALLN 422 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~s~-------~~~i~~~A~~~L~n 422 (661)
...+...+..|++.+.+.+..++--+.++.+.++.. +..+.++=+.+.|-++|+++ ....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999888999999999998766633 44577776678999999872 34567789999999
Q ss_pred ccCCCcchhHhhhCCChHHHHHHHccCCH-HHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHH
Q 006099 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSM-EARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 501 (661)
Q Consensus 423 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 501 (661)
++.+++....----+-||.|++++.+.+. ++...+..+|..++..++++..+.+.|+++.|.+.+.+ .+...+.|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99876553322224679999999988766 99999999999999999999999999999999999988 55678889999
Q ss_pred HHHhhcccCchHHHH----HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh--HHHHHhCC----ChHHHHHHhhC
Q 006099 502 LFNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG--KAAIGAAE----AVPVLVEVIGN 571 (661)
Q Consensus 502 L~nL~~~~~~~~~iv----~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~--~~~i~~~g----~i~~Lv~lL~~ 571 (661)
|.+++...+....-- -..+++.+-..+........-..+..|..+-...+. ........ +...+..+|++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 999887655221100 113445555555554455556677777766544421 11111222 33445556655
Q ss_pred C-CHHHHHHHHHHHHHH
Q 006099 572 G-SPRNRENAAAVLVHL 587 (661)
Q Consensus 572 ~-~~~~ke~A~~~L~~L 587 (661)
. .+..|..|..+...|
T Consensus 243 r~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASL 259 (543)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 3 455565555444444
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.00 E-value=0.0005 Score=73.93 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=41.4
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.++.|..+++. +.++..++.+|..+... ..++.|+..+.... .++.|.+.++.+.-..
T Consensus 241 a~~~L~~ll~d--~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 241 AQAWLRELLQA--AATRREALRAVGLVGDV-----------EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHhcC--hhhHHHHHHHHHHcCCc-----------chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 45666666664 33777888887776543 37888888777543 9999999999998644
No 84
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.1e-06 Score=88.33 Aligned_cols=69 Identities=28% Similarity=0.561 Sum_probs=54.6
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHh----CCCCCCCCCCCCcCCCCccchhh----hhhHHHHHHHcC
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA----GHRTCPKTQQTLTSTAVTPNYVL----RSLIAQWCEANG 329 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~----~~~~cP~~~~~l~~~~l~~n~~l----~~~i~~~~~~~~ 329 (661)
+..||||++...-|+.+.|||.||..||-++|.. +...||.|+..+....+.|-+.. +.-+..++..||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 7899999999999999999999999999999973 45789999998876554443222 333666777777
No 85
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.95 E-value=6.7e-06 Score=58.69 Aligned_cols=41 Identities=24% Similarity=0.599 Sum_probs=35.2
Q ss_pred cCcCCcccc---cCCeecCCCccccHHHHHHHHHhCCCCCCCCCC
Q 006099 263 RCPISLELM---KDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQ 304 (661)
Q Consensus 263 ~CpIc~~~m---~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~ 304 (661)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999988 357789999999999999998 46788999974
No 86
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.8e-06 Score=86.49 Aligned_cols=69 Identities=23% Similarity=0.433 Sum_probs=58.1
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCc-CCCCccchhhhhhHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT-STAVTPNYVLRSLIAQWC 325 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~~n~~l~~~i~~~~ 325 (661)
.+..+|.||||+++++...++ .|+|.||+.||.+-+..++..||.||+.+. ...|.++...-.+|.+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 456689999999999988776 699999999999999999999999999986 456777777777776654
No 87
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=9.7e-06 Score=81.67 Aligned_cols=52 Identities=25% Similarity=0.544 Sum_probs=41.8
Q ss_pred CCccCcCCcc-cccCCe----ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 006099 260 DDFRCPISLE-LMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 311 (661)
Q Consensus 260 ~~f~CpIc~~-~m~dPv----~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 311 (661)
++..||+|.. ....|- +.+|||.||.+|+...|..+...||.|+.++....+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 4578999997 244553 237999999999999988788899999998886663
No 88
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.4e-06 Score=80.19 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=45.4
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHH-HHHhCCCCCCCCCCCCcCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEK-WLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~-w~~~~~~~cP~~~~~l~~~ 309 (661)
..+|+|+||++.+.+|+.++|||.||..||-. |-.+....||.||......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 56899999999999999999999999999999 8877777899999876543
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00071 Score=67.48 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=163.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc
Q 006099 399 PLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS 477 (661)
Q Consensus 399 ~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 477 (661)
--++.+|.+.++.++..|+..+.++... ..+.... +...++.+.++++...+ .+.|+.+|.|++.....+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999999765 3333322 34567778888877655 778999999999998888888777
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH--c----CChHHHHhcccC-CCc--cHHHHHHHHHHHhcC
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR--A----GVVPTLMHLLTE-PGG--GMVDEALAILAILSS 548 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~--~----g~v~~Lv~lL~~-~~~--~~~~~al~~L~~L~~ 548 (661)
.+..++.++-+.....-..+|.+|.||+..++....+.. . .++..++..+.+ +.. .-.++...++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888888877666778889999999998876654331 1 344455554433 222 234567778899999
Q ss_pred ChhhHHHHHhCCChH--HHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHH-----------------
Q 006099 549 HPEGKAAIGAAEAVP--VLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK-ELGVMGPLV----------------- 608 (661)
Q Consensus 549 ~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~-~~g~i~~L~----------------- 608 (661)
.+.+|..+.....++ .++.+=..++.--|...+++|.|.|....-+-..+. +..+.|.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~L 241 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKL 241 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcC
Confidence 999999888775332 222222223333355678999998876543322221 111222222
Q ss_pred ----Hhhh-----cCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 006099 609 ----DLAQ-----NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 609 ----~ll~-----~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l 649 (661)
+++- ..++.+++.-.++|..|+... ..++.+.+.+.-.-+
T Consensus 242 P~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 242 PVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPIL 290 (353)
T ss_pred CHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHH
Confidence 3332 347888999999999998643 334445554443333
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.002 Score=67.16 Aligned_cols=238 Identities=18% Similarity=0.149 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC------Ccc----hhHhhhCCChHHH
Q 006099 373 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC------EDN----KGSIVSSGAVPSI 442 (661)
Q Consensus 373 ~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~------~~~----k~~i~~~g~i~~L 442 (661)
..++.+..++. -|.-...+++.++|+.|+.+|.+.|.++-...+..|-.|.-. .+. -..+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 34556666764 677777889999999999999999999988888888888642 122 2244578899999
Q ss_pred HHHHccCCHHH------HHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCC--HHHHHHHHHHHHHhhcccC-ch
Q 006099 443 VHVLRIGSMEA------RENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGT--QRGKKDAATALFNLCIYQG-NK 512 (661)
Q Consensus 443 v~lL~~~~~e~------~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~-~~ 512 (661)
++-+.+-+..+ ..++...+.|+...+ +....+++.|.+.+|+..+.... ...+..|..+|.-+..+.. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 98886544333 456677788887665 56777788899999998766442 3456677778877776655 66
Q ss_pred HHHHHcCChHHHHhcccC---CC------ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHH
Q 006099 513 GKAVRAGVVPTLMHLLTE---PG------GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 583 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~---~~------~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~ 583 (661)
...-...++..+++-+.. .+ .++.+.-..+|+.+-..+.++..++...++....-+++. ....+-.|..+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 666678888888877643 22 356677778888888899999999998888877777765 34557778899
Q ss_pred HHHHhcCCH--HHHHHHHHcCCHHHHHHhhh
Q 006099 584 LVHLCAGDQ--QYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 584 L~~L~~~~~--~~~~~~~~~g~i~~L~~ll~ 612 (661)
|-....+.+ .+|...++.++...+..+..
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 988887776 78988888888877777665
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=1.7e-05 Score=55.65 Aligned_cols=40 Identities=53% Similarity=0.696 Sum_probs=37.9
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhcc
Q 006099 385 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424 (661)
Q Consensus 385 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs 424 (661)
+++++..+++.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999986
No 92
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00029 Score=79.95 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHh---hChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHh-ccCCCcchhHhhhCCChHHHHHHHc
Q 006099 372 RSAAGEIRLLAK---RNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN-LSICEDNKGSIVSSGAVPSIVHVLR 447 (661)
Q Consensus 372 ~~Al~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~n-Ls~~~~~k~~i~~~g~i~~Lv~lL~ 447 (661)
..=+++|..|++ -.+-.-..-...|..|..+++|+++-.+++-.-+.+-.. |+.|+..+..+++.++-.-++.+|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 333444444443 233333344566999999999999988887766665555 4778888889999988899999998
Q ss_pred c-C--CHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcc-cCchHHHHHcCCh
Q 006099 448 I-G--SMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIY-QGNKGKAVRAGVV 521 (661)
Q Consensus 448 ~-~--~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~-~~~~~~iv~~g~v 521 (661)
. + ++|-|..|+.+|..+..+- -++....+.+.|...+..|.++ .+-.+...+-+|..|-.+ ++.|..=++.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 7 3 4688899999999998764 3566666778999999999886 477888999999999765 4556666789999
Q ss_pred HHHHhcccCCCccHHHHHHHHHHHhcCC-----hhhHHHH-----------HhCCChH----HHHHHhhCCCHHHHHHHH
Q 006099 522 PTLMHLLTEPGGGMVDEALAILAILSSH-----PEGKAAI-----------GAAEAVP----VLVEVIGNGSPRNRENAA 581 (661)
Q Consensus 522 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~-----~~~~~~i-----------~~~g~i~----~Lv~lL~~~~~~~ke~A~ 581 (661)
..|..+|.++-++++..|+.+|+.+-++ ++....+ .-+..+. .++.+++.+++-++...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 9999999999999999999999988763 2322211 1112233 677788889999999988
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 006099 582 AVLVHLCAGDQQYLAEAK 599 (661)
Q Consensus 582 ~~L~~L~~~~~~~~~~~~ 599 (661)
.+|..+..+...+...+.
T Consensus 725 v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 725 VALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHHHHhhHHHhHHHh
Confidence 899888877655444443
No 93
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0017 Score=65.09 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=196.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHH--HhhCCCChHHHHHHHHHHHhcc-CCCc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLV--GLLSTPDSRTQEHAVTALLNLS-ICED 428 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv--~lL~s~~~~i~~~A~~~L~nLs-~~~~ 428 (661)
+.+.++.++..+-..|.++-..|.+.|..++. .+..-..+.+......+- .+-...+.-.+...+..+..+. ..+.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 56788889999988899999999999999986 566666676665544332 2222234445556666666663 4455
Q ss_pred chhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC--CHHHHHHHH----HH
Q 006099 429 NKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG--TQRGKKDAA----TA 501 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~----~a 501 (661)
.-...-.+|.+..+..-|+. .+.-++.++......|+..+..+..+.+.|.|..+..++.-. ++--+..++ +.
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 56666688999998888876 366788899999999999999999999999999999998643 333333333 33
Q ss_pred HHHhhcccCchHHHHHc--CChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCC--hHHHHHHhhCCC-HHH
Q 006099 502 LFNLCIYQGNKGKAVRA--GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA--VPVLVEVIGNGS-PRN 576 (661)
Q Consensus 502 L~nL~~~~~~~~~iv~~--g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~--i~~Lv~lL~~~~-~~~ 576 (661)
+.++...+-....+.+. -+|..-+.++...++..++.|+.+++.|.++-+|++.+..+|- ...++--..+.+ ..-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 44444433222223321 2344556666678899999999999999999999999988864 333333232333 233
Q ss_pred HHHHHHHHHHHhcC---CHHHH----------HHHHH-------cCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHH
Q 006099 577 RENAAAVLVHLCAG---DQQYL----------AEAKE-------LGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 636 (661)
Q Consensus 577 ke~A~~~L~~L~~~---~~~~~----------~~~~~-------~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~ 636 (661)
++.+..+|.+++.. .++.. ..+.+ ..-......+++.+.++.+-.|...+..+....=..
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWal 444 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWAL 444 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHH
Confidence 56667777777642 12111 11111 122445566777788999999998888887766556
Q ss_pred HHHHhhhhhHH
Q 006099 637 KQAQVQTESQS 647 (661)
Q Consensus 637 ~~~l~~~~~~~ 647 (661)
+..++.++-..
T Consensus 445 keifakeefie 455 (524)
T KOG4413|consen 445 KEIFAKEEFIE 455 (524)
T ss_pred HHHhcCcccee
Confidence 66666555443
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.79 E-value=0.00019 Score=71.53 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=122.0
Q ss_pred ccCCHHHHHHHHHHHHHcccCC---chhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCCh
Q 006099 447 RIGSMEARENAAATLFSLSVID---ENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVV 521 (661)
Q Consensus 447 ~~~~~e~~~~a~~~L~~Ls~~~---~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v 521 (661)
.+.+++.+..++..|..+...+ .....+... ..+..+...+.+....+...|+.++..|+..-.....-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4457899999998888887655 333333332 66677777777777788899999999998876655443445688
Q ss_pred HHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Q 006099 522 PTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK-- 599 (661)
Q Consensus 522 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~-- 599 (661)
+.|++.+.+++..+.+.|..+|..++.+-.....+ .++.+...+.+.++.+|..++..|..+....+.....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999888889999999999888765411111 145666677888999999999988888765551111111
Q ss_pred --HcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 006099 600 --ELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 600 --~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
-..+++.+...+.++++.+|+.|..++..+.+..++....+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 134788889999999999999999999999887765544433
No 95
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.75 E-value=2.7e-05 Score=62.20 Aligned_cols=39 Identities=33% Similarity=0.821 Sum_probs=31.6
Q ss_pred CcCCcccccCC------------e-ecCCCccccHHHHHHHHHhCCCCCCCCC
Q 006099 264 CPISLELMKDP------------V-IVSTGQTYERSCIEKWLEAGHRTCPKTQ 303 (661)
Q Consensus 264 CpIc~~~m~dP------------v-~~~cg~t~~r~~I~~w~~~~~~~cP~~~ 303 (661)
|+||++.|.+| + ..+|||.|...||.+|+. .+.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 99999998433 2 347999999999999998 555999996
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.73 E-value=0.0018 Score=68.81 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=175.7
Q ss_pred HHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC--CHHHH
Q 006099 377 EIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG--SMEAR 454 (661)
Q Consensus 377 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~ 454 (661)
.|-.+.+.++.-+..+.-....+.+..++-+++.+++-.+.+++..+..+...-..+.+.+.--.++.-|... +..-|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3444445555555555444455666655555569999999999999998888888888888777788888664 45678
Q ss_pred HHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCcc
Q 006099 455 ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG 534 (661)
Q Consensus 455 ~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~ 534 (661)
++|...+..+...+.+...+ ..|.+..++.+..+.+...+..|+.+|+.|+..++. .++..|++..|++.+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~--lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE--LVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH--HHHHcCCHHHHHHHHHhccHh
Confidence 89999888887664433322 458899999999999999999999999999986532 356899999999999876656
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC-------CHH-HHH-HHHHHHHHHhcCCHHHHHHHHHc-CCH
Q 006099 535 MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG-------SPR-NRE-NAAAVLVHLCAGDQQYLAEAKEL-GVM 604 (661)
Q Consensus 535 ~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~-~ke-~A~~~L~~L~~~~~~~~~~~~~~-g~i 604 (661)
+.+..+.++..+-.+|..|+.+...--+..++.-+.+. +.+ .+. .+..++..+-..=++......+. ..+
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88889999999999999988776533344444433221 121 122 23333333332222122111222 478
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 605 GPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 605 ~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
..|+..+..+++++++....++..+-+.
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 8899999999999999999888877543
No 97
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=4.4e-05 Score=87.25 Aligned_cols=72 Identities=35% Similarity=0.543 Sum_probs=67.3
Q ss_pred CCCCCCccCcCCcccccCCeecC-CCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHc
Q 006099 256 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (661)
.++|++|.-|+..-+|.|||++| +|++.||+-|.+++. ...+.|.||.+|+...+.||..++..|..|....
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998 899999999999998 6678999999999999999999999999998764
No 98
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.70 E-value=0.002 Score=67.36 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=145.1
Q ss_pred HHHHHHhCCHHHHHHhhCCCChHH--HHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcc
Q 006099 389 RVAIAEAGAIPLLVGLLSTPDSRT--QEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLS 465 (661)
Q Consensus 389 r~~i~~~g~i~~Lv~lL~s~~~~i--~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls 465 (661)
+..+...|+...|++++.+++.+. +..|...|-.+ ...+|++.++.-| +..|+.+-+.. .++.....+.+|.++.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456677899999999999987655 77777766655 3457888888766 56666655543 6788999999999998
Q ss_pred cCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC--chHHHHHcCChHHHHhcccCCCccHHHHHHHH
Q 006099 466 VID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAI 542 (661)
Q Consensus 466 ~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~ 542 (661)
.+. +....+++.|++..++-..+..++.+...++.+|.|.+.+.. .+.+|++..+-.-|..+-.+.+.-++-+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 775 467788899999999999998899999999999999988755 46689998888889888887777778889989
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHHhhCCC
Q 006099 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGS 573 (661)
Q Consensus 543 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 573 (661)
.+.|+.+.+.-..+...|.+..+-.++.+.+
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence 9999998888778877776655555555433
No 99
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.67 E-value=7.5e-05 Score=52.37 Aligned_cols=41 Identities=39% Similarity=0.511 Sum_probs=38.1
Q ss_pred ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 549 HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 549 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
+++++..+++.|++|.|+.+|+++++.+++.|+|+|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999974
No 100
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00092 Score=71.55 Aligned_cols=233 Identities=17% Similarity=0.154 Sum_probs=160.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..+.-|...|...+.+++..+=..|..+-.+-......+--...++.++.-+.++++.+|..|+.-+..+..-.......
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 45667888888888888755544444443211111111122346899999999999999999988787776555444455
Q ss_pred hhCCChHHHHHHHccCCH-HHHHHHH---HHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006099 434 VSSGAVPSIVHVLRIGSM-EARENAA---ATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~-e~~~~a~---~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
.-+|++..++..+.+..+ ..++.+. ..|..+......+..+--...|..|...+.+...+.+..++..+..|-...
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 578888888888866533 2333333 233444443333333333356788888888989999999999999998888
Q ss_pred CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 510 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 510 ~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
+++.......+++.|+.-|.+++..++..++.+++++|..+..... -..+..|+++......-.+..+.-++..||.
T Consensus 368 p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 368 PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 8887777788999999999999999999999999999998765411 1133344555555555566777788888875
No 101
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.65 E-value=5.3e-05 Score=73.89 Aligned_cols=72 Identities=21% Similarity=0.462 Sum_probs=59.9
Q ss_pred CCCCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCC-CcCCCCccchhhhhhHHHHHHHc
Q 006099 255 APVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQT-LTSTAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 328 (661)
+++++ +.||.|..++++|+-+ +|||+||..||+..+....+.||.|... +.-..+.|++..+.-++.+..++
T Consensus 270 ~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 270 PPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred CCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 33444 8999999999999988 7899999999999998889999999653 44567889888888888887743
No 102
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.65 E-value=2.3e-05 Score=78.45 Aligned_cols=65 Identities=18% Similarity=0.445 Sum_probs=52.5
Q ss_pred CCCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcC----CCCccchhhhhhH
Q 006099 256 PVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTS----TAVTPNYVLRSLI 321 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~----~~l~~n~~l~~~i 321 (661)
.++..+..|++|..+|.|+.++ .|=||||++||.+++.. ..+||.|+..+-. ..+.++.+++.++
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHH
Confidence 3556688999999999999875 79999999999999996 7899999866543 3466667776664
No 103
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.62 E-value=0.00087 Score=66.96 Aligned_cols=227 Identities=17% Similarity=0.131 Sum_probs=160.8
Q ss_pred hhCCCChHHHHHHHHHHHhccCCCcchhHhh-hCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhhc-CC
Q 006099 404 LLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGAS-GA 479 (661)
Q Consensus 404 lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~ 479 (661)
+++.=++-++..|+.+|.++..+.+.|..+- +...-..+++.+++. ..+++.+..-+++-|+........|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333355577889999999999887777654 555667888888775 5789999999999999887766444443 77
Q ss_pred cHHHHHhhhcC-CHHHHHHHHHHHHHhhccc--CchHHHHHcCChHHHHhcccC---CCccHHHHHHH---HHH----Hh
Q 006099 480 IPPLVTLLSEG-TQRGKKDAATALFNLCIYQ--GNKGKAVRAGVVPTLMHLLTE---PGGGMVDEALA---ILA----IL 546 (661)
Q Consensus 480 i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~---~~~~~~~~al~---~L~----~L 546 (661)
|.-|+.+++.. ...+.+.++.++.|++... +....+.-.|-+.+-++.|.. .+.+++...-. .|. .|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888875 3667788999999998833 223355556666666776644 33333222111 111 11
Q ss_pred cC---------------C---------hhhHHHHHhC--CChHHHHHHhhCCCHHH-HHHHHHHHHHHhcCCHHHHHHHH
Q 006099 547 SS---------------H---------PEGKAAIGAA--EAVPVLVEVIGNGSPRN-RENAAAVLVHLCAGDQQYLAEAK 599 (661)
Q Consensus 547 ~~---------------~---------~~~~~~i~~~--g~i~~Lv~lL~~~~~~~-ke~A~~~L~~L~~~~~~~~~~~~ 599 (661)
|. . ..+...+.+. ..+..|.++++...+.+ -.-|+.=+..+....|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 1 1223334333 36788999999877653 44577788888888999999999
Q ss_pred HcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 600 ELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 600 ~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+.|+-..+++++.++++++|-.|..++..+-
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.59 E-value=0.0063 Score=64.38 Aligned_cols=188 Identities=29% Similarity=0.317 Sum_probs=139.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..+..+++.+.+.++.++..|...+..+. ..-++|.|..+|.+.+..++..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 56888999999888999999888866553 2346899999999999999999999886653
Q ss_pred hhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHH------------HHHHHH
Q 006099 434 VSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRG------------KKDAAT 500 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------------~~~a~~ 500 (661)
...+++.++..|.+ .+..+|..++.+|..+-. ..++.+|+..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 35578899999984 788999999999998742 344788888888765322 222222
Q ss_pred HHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHH
Q 006099 501 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENA 580 (661)
Q Consensus 501 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A 580 (661)
+|..+ -....++.+..++.+....++..|...|..+.... ....+.+...+.+.+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 22222 12346788888998888889999999998877665 2345677777888888888888
Q ss_pred HHHHHHHhcC
Q 006099 581 AAVLVHLCAG 590 (661)
Q Consensus 581 ~~~L~~L~~~ 590 (661)
+..|..+-..
T Consensus 234 ~~~l~~~~~~ 243 (335)
T COG1413 234 LLALGEIGDE 243 (335)
T ss_pred HHHhcccCcc
Confidence 8777776543
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00043 Score=73.53 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHHHHHc
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLR 447 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~ 447 (661)
..-..++..|..+++.-..-|..+.++..+..|+++|+.++..+.--+...++|+... +.-+..+...|.|..|+.++.
T Consensus 404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 404 LDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 3345566778888876667788888999999999999998777777778888888654 555888899999999999999
Q ss_pred cCCHHHHHHHHHHHHHcccCCch--hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC----chHHHHHc---
Q 006099 448 IGSMEARENAAATLFSLSVIDEN--KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG----NKGKAVRA--- 518 (661)
Q Consensus 448 ~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~----~~~~iv~~--- 518 (661)
+.+..++.+..|.|..+..+... +-+..+.-++..++++..++.-.++..++..|.|+.-+.. .+...+..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 88889999999999999887654 4455667788999999998888899999999999865322 12211111
Q ss_pred -CChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH-h-CCChHHHHHHhh----C--------------------
Q 006099 519 -GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG-A-AEAVPVLVEVIG----N-------------------- 571 (661)
Q Consensus 519 -g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~-~-~g~i~~Lv~lL~----~-------------------- 571 (661)
-....|++.+...++-.....+.+|.+++..++....++ + ...+..+.++|. .
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 134456666666666666667888877766655443322 2 123333333221 0
Q ss_pred -----------------------------CCHHHHHHHHHHHHHHhcC---------CHHHHHHHHHcCCHHHHHHhhhc
Q 006099 572 -----------------------------GSPRNRENAAAVLVHLCAG---------DQQYLAEAKELGVMGPLVDLAQN 613 (661)
Q Consensus 572 -----------------------------~~~~~ke~A~~~L~~L~~~---------~~~~~~~~~~~g~i~~L~~ll~~ 613 (661)
.+.++-....|++.++... +.+.+..+...|+-..|..+..+
T Consensus 644 v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~ 723 (743)
T COG5369 644 VNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAK 723 (743)
T ss_pred ecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhcc
Confidence 0111222334454454321 11567778888999999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 006099 614 GTDRGKRKAAQLLERMS 630 (661)
Q Consensus 614 ~~~~~k~~A~~lL~~L~ 630 (661)
.++.+++++..+|.+|.
T Consensus 724 ~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 724 DSLIVREKIGTALENLR 740 (743)
T ss_pred CcHHHHHHHHHHHHhhh
Confidence 99999999999999875
No 106
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.013 Score=66.95 Aligned_cols=242 Identities=16% Similarity=0.193 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHh----CCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHH
Q 006099 370 DQRSAAGEIRLLAKRNADNRVAIAEA----GAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVH 444 (661)
Q Consensus 370 ~~~~Al~~L~~L~~~~~~~r~~i~~~----g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~ 444 (661)
-..-++.+|+++.+.+++-...+... |..+.++.+|.. +++.+|.-|+.++..+..+.+.-..|+..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 44567888999888788655544332 667777777765 6889999999998888888888888999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhccc--------------
Q 006099 445 VLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ-------------- 509 (661)
Q Consensus 445 lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~-------------- 509 (661)
+|++. +..|+.+..+|+.|++..+-.....+.|++..+..++... +++.+..++..|..|....
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 99764 5778899999999998887666666777777776666443 3444455555555543000
Q ss_pred -----------------------------------------------------------------------C--------
Q 006099 510 -----------------------------------------------------------------------G-------- 510 (661)
Q Consensus 510 -----------------------------------------------------------------------~-------- 510 (661)
+
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence 0
Q ss_pred ---chH--------------------------------------------------------HHHHcCChHHHHhcccCC
Q 006099 511 ---NKG--------------------------------------------------------KAVRAGVVPTLMHLLTEP 531 (661)
Q Consensus 511 ---~~~--------------------------------------------------------~iv~~g~v~~Lv~lL~~~ 531 (661)
+|. ++-..|.+|.++..+...
T Consensus 1980 G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~ 2059 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ 2059 (2235)
T ss_pred hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc
Confidence 000 000112223333333222
Q ss_pred CccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHh
Q 006099 532 GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVDL 610 (661)
Q Consensus 532 ~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l 610 (661)
+..+-..|+++|..|+.+.-+..+|....++..++..++.. +..---|+.+|-.+... .++-+....+.|.+|.|+.+
T Consensus 2060 n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~L 2138 (2235)
T KOG1789|consen 2060 NTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQL 2138 (2235)
T ss_pred CCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHH
Confidence 23344568888888998888888998888887788877632 23334778888777653 34566777899999999999
Q ss_pred hhc
Q 006099 611 AQN 613 (661)
Q Consensus 611 l~~ 613 (661)
+..
T Consensus 2139 Ld~ 2141 (2235)
T KOG1789|consen 2139 LDS 2141 (2235)
T ss_pred hcc
Confidence 854
No 107
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=5.6e-05 Score=79.67 Aligned_cols=72 Identities=22% Similarity=0.514 Sum_probs=58.8
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC-----CccchhhhhhHHHHHHH
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA-----VTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~ 327 (661)
+..++.+|.|-||...+.+||+++|||+||..||.+-++ ....||.|+..+.... ..+|+..+.++..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345688999999999999999999999999999999777 6778999999887432 23466677778777764
No 108
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.50 E-value=0.0063 Score=66.67 Aligned_cols=257 Identities=14% Similarity=0.156 Sum_probs=171.8
Q ss_pred HHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh----------CCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHH
Q 006099 374 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL----------STPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSI 442 (661)
Q Consensus 374 Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~L 442 (661)
|+..|+.+++ ++.+...+....++..|.++- ...+..+...|+.+|+|+... +..|..+.+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777775 666667777766777777765 235788999999999999776 5668888899999999
Q ss_pred HHHHccC-----CHHHHHHHHHHHHHcccCC-chhhhhhhc-CCcHHHHHhhhcC-----------------CHHHHHHH
Q 006099 443 VHVLRIG-----SMEARENAAATLFSLSVID-ENKVTIGAS-GAIPPLVTLLSEG-----------------TQRGKKDA 498 (661)
Q Consensus 443 v~lL~~~-----~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~-g~i~~Lv~lL~~~-----------------~~~~~~~a 498 (661)
+..|+.. +.+..-...++|+-++... +.+..+.+. +++..|+..|... +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 6778888889998887654 566666655 7888887776421 23445678
Q ss_pred HHHHHHhhcccCchHHHHHcCChHHHHhcccC---------CCccHHHHHHHHHHHhcCChhhHHHH-------------
Q 006099 499 ATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE---------PGGGMVDEALAILAILSSHPEGKAAI------------- 556 (661)
Q Consensus 499 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~~~~~~i------------- 556 (661)
+++++|+..+......-...+.++.|+.+|.. +.......++.+|.|+--. ....+
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCC
Confidence 99999998765554321223344444444321 2234566677777766221 11110
Q ss_pred -HhCCChHHHHHHhhC----CC-H---HHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCCHHHHHHhh
Q 006099 557 -GAAEAVPVLVEVIGN----GS-P---RNRENAAAVLVHLCAGDQQYLAEAKE----------------LGVMGPLVDLA 611 (661)
Q Consensus 557 -~~~g~i~~Lv~lL~~----~~-~---~~ke~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~ll 611 (661)
.....+..|+.+|.. .. . ..-.-.+.+|..++......+..+.. ..+-..|+.++
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 112356777777752 11 1 22333456677777766544444432 34688899999
Q ss_pred hcCChHHHHHHHHHHHHHHhhH
Q 006099 612 QNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 612 ~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.+..+.+|..+..+|..|++.+
T Consensus 318 t~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCCchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999755
No 109
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.50 E-value=0.00091 Score=66.55 Aligned_cols=183 Identities=19% Similarity=0.130 Sum_probs=116.6
Q ss_pred HccCCHHHHHHHHHHHHHHHhhC--hhhHHHHHHh--CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCC
Q 006099 363 LTSGSPEDQRSAAGEIRLLAKRN--ADNRVAIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGA 438 (661)
Q Consensus 363 L~s~~~~~~~~Al~~L~~L~~~~--~~~r~~i~~~--g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~ 438 (661)
-.+.+|+.+.+|+..|+.+..++ ......+.+. ..++.++..+.+....+...|+.++..++..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35689999999999999999877 2333333221 5667777888777788889999999999865333222224557
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC-chHHH--
Q 006099 439 VPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-NKGKA-- 515 (661)
Q Consensus 439 i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~i-- 515 (661)
++.|+..+.++...+++.|..+|..+...-.+...+ .++.+...+.+.++.++..++..|..+....+ ....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 788888888888889999999999887653311111 14666677778899999999998888876555 11111
Q ss_pred --HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 516 --VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 516 --v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
.-..+++.+...+.+.++++++.|-.++..+...
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1145778889999999999999999999988554
No 110
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0019 Score=70.37 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=129.5
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc--hhHhh---hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN--KGSIV---SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN 470 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~--k~~i~---~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~ 470 (661)
.++|.|..+|.+++...++-|..+|..++.+... ..... -.-.+|.++++.++.++.+|..|..++...-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 4689999999999999999999999999876421 11111 12367888999999999999999999877654432
Q ss_pred hhhhhh-cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 471 KVTIGA-SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 471 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
...+.. ..+++.|..+-.+.+++++++.|.+|..|......+..---.++|+-++..-.+.+.++.-.|+.....+|..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 222222 3788889998888899999999999999987665554322356777788888888888999999999999999
Q ss_pred hhhHHHHHhC--CChHHHHHH
Q 006099 550 PEGKAAIGAA--EAVPVLVEV 568 (661)
Q Consensus 550 ~~~~~~i~~~--g~i~~Lv~l 568 (661)
+..+..+... ..+|.|+.-
T Consensus 287 pi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHcc
Confidence 8666555432 456666543
No 111
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.49 E-value=0.0027 Score=69.47 Aligned_cols=238 Identities=20% Similarity=0.217 Sum_probs=159.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-----ChHHHHHHHHHHHhccC-CCcchhHhh-hCC
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-----DSRTQEHAVTALLNLSI-CEDNKGSIV-SSG 437 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~i~~~A~~~L~nLs~-~~~~k~~i~-~~g 437 (661)
..++.+..+|+++|.|+...++..|..+.+.|+.+.++..|+.. +.++.-...++|.-++. ....+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999876 67888888888877754 455666665 568
Q ss_pred ChHHHHHHHcc-----------------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC---------C
Q 006099 438 AVPSIVHVLRI-----------------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG---------T 491 (661)
Q Consensus 438 ~i~~Lv~lL~~-----------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---------~ 491 (661)
++..|+..|.. .+.+....+..++||+.........-...+.++.|+.++..- .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888887731 123456678899999987654332212235566666665421 2
Q ss_pred HHHHHHHHHHHHHhhcccCch--------HH----HHHcCChHHHHhcccC-----CC---ccHHHHHHHHHHHhcCCh-
Q 006099 492 QRGKKDAATALFNLCIYQGNK--------GK----AVRAGVVPTLMHLLTE-----PG---GGMVDEALAILAILSSHP- 550 (661)
Q Consensus 492 ~~~~~~a~~aL~nL~~~~~~~--------~~----iv~~g~v~~Lv~lL~~-----~~---~~~~~~al~~L~~L~~~~- 550 (661)
......++.+|.|+-...... .. ......+..|+.+|.. .. .+...-.+.+|.+++...
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 355677888888882211100 00 1122356677777754 11 234556677788887764
Q ss_pred hhHHHHHh----------------CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006099 551 EGKAAIGA----------------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602 (661)
Q Consensus 551 ~~~~~i~~----------------~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g 602 (661)
..|..+.. ...-..|++++.+..+.+|..+...|+.||..+...-..-...|
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG 350 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYG 350 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCch
Confidence 33433321 23457899999888799999999999999987654433333333
No 112
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.48 E-value=6.9e-05 Score=80.19 Aligned_cols=67 Identities=27% Similarity=0.607 Sum_probs=54.7
Q ss_pred CCCCCccCcCCcccccCCee-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc-chhhhhhHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP-NYVLRSLIAQW 324 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~-n~~l~~~i~~~ 324 (661)
.+.+++.||+|..++.||+. +.|||.||+.|+..|... +..||.|+..+......+ ....+..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 36778999999999999999 499999999999999995 889999988877555444 45555555554
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.014 Score=58.73 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHH
Q 006099 367 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHV 445 (661)
Q Consensus 367 ~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l 445 (661)
+.-.+...+.-|-.+..-++......-..|.+..|..-|+. .|.-++.+.+.....|+..+..+..+.+.|.|+.|..+
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 34456666666666766677777777888999999988887 67778888888888899888999999999999999999
Q ss_pred HccC--CHHHHHHHH----HHHHHcccCCchhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH
Q 006099 446 LRIG--SMEARENAA----ATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR 517 (661)
Q Consensus 446 L~~~--~~e~~~~a~----~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~ 517 (661)
+... ++--+-.+. ..+.+....+-....+.+. -+|....+++...++.....|+.++..|-++.+++..+..
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk 343 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK 343 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc
Confidence 9644 232222233 3334444333333444444 5667777888888999999999999999999998887777
Q ss_pred cCC--hHHHHhc-ccCCCccHHHHHHHHHHHhcCC---h-----hhH------HHHHh-----C--CChHHHHHHhhCCC
Q 006099 518 AGV--VPTLMHL-LTEPGGGMVDEALAILAILSSH---P-----EGK------AAIGA-----A--EAVPVLVEVIGNGS 573 (661)
Q Consensus 518 ~g~--v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~---~-----~~~------~~i~~-----~--g~i~~Lv~lL~~~~ 573 (661)
.|- ...++.- .......-++.++.+|.++++. + +++ ..+.+ + .-......+++.+.
T Consensus 344 TgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpf 423 (524)
T KOG4413|consen 344 TGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPF 423 (524)
T ss_pred cCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCC
Confidence 663 3444433 3333445567788888888762 1 222 11111 1 22445567777788
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC
Q 006099 574 PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG 614 (661)
Q Consensus 574 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 614 (661)
|+++-.+..++..++...=.....+..+|++....+-....
T Consensus 424 pEihcAalktfTAiaaqPWalkeifakeefieiVtDastEh 464 (524)
T KOG4413|consen 424 PEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEH 464 (524)
T ss_pred hhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhh
Confidence 99999999999999987655555566677776665554433
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0041 Score=66.77 Aligned_cols=235 Identities=16% Similarity=0.094 Sum_probs=160.4
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 474 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 474 (661)
++||.|-.-+...++.+|...+.-|.-|-.-+ ..+.+. -...++.+..+|.+.+.+++..+-.+|.++-..-.+....
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45566666566678888877766665553222 223332 3567888999999999999977776666553221222222
Q ss_pred hh-cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCc-cHHHHHHH---HHHHhcCC
Q 006099 475 GA-SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG-GMVDEALA---ILAILSSH 549 (661)
Q Consensus 475 ~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~-~~~~~al~---~L~~L~~~ 549 (661)
.+ ...++.++..+.+.++.++..|+..|.....-.+...-..-.|++..+++++.+... .+.+.+.. .|..+++.
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 12 367889999999999999999999999888777776666668899999999977544 34443332 34456666
Q ss_pred hhhHHHHHhCC-ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 550 PEGKAAIGAAE-AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 550 ~~~~~~i~~~g-~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
+...+. ++.| .+..+...+.++...+|-.+..-+..|-...| .........+.+.|+.-+.+.++.+...+..++.+
T Consensus 326 ~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 326 ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 655545 4444 56778888888888889998866666655544 33333444578888888888888888888888888
Q ss_pred HHhhH
Q 006099 629 MSRFI 633 (661)
Q Consensus 629 L~~~~ 633 (661)
++...
T Consensus 404 i~~s~ 408 (675)
T KOG0212|consen 404 ICSSS 408 (675)
T ss_pred HhcCc
Confidence 87543
No 115
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00031 Score=75.53 Aligned_cols=73 Identities=34% Similarity=0.483 Sum_probs=66.2
Q ss_pred CCCCCCCccCcCCcccccCCeecC-CCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHc
Q 006099 255 APVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (661)
..++|++|.-|....+|+|||++| +|.+.+|+-|..++- ...+.|.-|.|++-..++||..+|+-|..|....
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll-sd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL-SDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh-cCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 458999999999999999999985 689999999999998 5678999999999999999999999999987643
No 116
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.00059 Score=56.60 Aligned_cols=86 Identities=34% Similarity=0.488 Sum_probs=70.4
Q ss_pred HHHHHHhh-CCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhh
Q 006099 398 IPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA 476 (661)
Q Consensus 398 i~~Lv~lL-~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~ 476 (661)
||.|++.| +++++.++..|+.+|+++- ...+++.|+.++++.++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 68899999 8889999999999998552 235689999999999999999999999987 24
Q ss_pred cCCcHHHHHhhhcCC-HHHHHHHHHHHH
Q 006099 477 SGAIPPLVTLLSEGT-QRGKKDAATALF 503 (661)
Q Consensus 477 ~g~i~~Lv~lL~~~~-~~~~~~a~~aL~ 503 (661)
..+++.|.+++.+.+ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 568999999998865 455788887774
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.36 E-value=0.012 Score=63.52 Aligned_cols=180 Identities=19% Similarity=0.070 Sum_probs=100.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS 477 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~ 477 (661)
+..|+..|.+.+..++..++.+|..+ ...+..+.|+.+|++.++.++..++.++... ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RH 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------cc
Confidence 56677777776666777776666432 2345566677777666666666666555441 11
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG 557 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 557 (661)
...+.|..+|++.++.++..|+.+|..+-. ...++.|...+.+.++.++..|+..+..+.. +.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~------ 209 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RL------ 209 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-Hh------
Confidence 234567777777777777777777766543 2345556666666777777777766654432 21
Q ss_pred hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 558 AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 558 ~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
++..+..+...........+. ++..+. +++ .+++.|..+++... ++..+..+|..+..
T Consensus 210 ---A~~~l~~~~~~~g~~~~~~l~-~~lal~-~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 210 ---AWGVCRRFQVLEGGPHRQRLL-VLLAVA-GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred ---HHHHHHHHHhccCccHHHHHH-HHHHhC-Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 233333322222211222222 222222 111 35666677776643 77777777776654
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.31 E-value=0.00092 Score=55.41 Aligned_cols=86 Identities=30% Similarity=0.378 Sum_probs=69.9
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 356 IEILLCKL-TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 356 i~~Lv~~L-~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
++.|++.| .+.++.++..|+..|..+.. ..++|.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899999 78899999999999985421 135899999999999999999999998873
Q ss_pred hCCChHHHHHHHccC-CHHHHHHHHHHHH
Q 006099 435 SSGAVPSIVHVLRIG-SMEARENAAATLF 462 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~ 462 (661)
...+++.|.+++.+. +..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 355889999999876 5667888888774
No 119
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.27 E-value=0.00011 Score=67.45 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=41.1
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
+.+| |.|-||..-+..||++.|||.||..|..+-.. ...+|-.|+...
T Consensus 193 e~IP--F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 193 EKIP--FLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred CCCc--eeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 3445 99999999999999999999999999888877 456899997754
No 120
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00017 Score=74.07 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=40.4
Q ss_pred ccCcCCcccccC--C-eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 262 FRCPISLELMKD--P-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 262 f~CpIc~~~m~d--P-v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+.|.||+|-+.+ - +++||+|.|...||..|+.+....||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 689999998863 3 4689999999999999999777789999986653
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.22 E-value=0.00033 Score=56.44 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=34.1
Q ss_pred cCcCCcccccC-Ceec-CCCccccHHHHHHHHHh--CCCCCCCCCCCCc
Q 006099 263 RCPISLELMKD-PVIV-STGQTYERSCIEKWLEA--GHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~m~d-Pv~~-~cg~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 307 (661)
.||.|...-.+ |++. .|+|.|...||.+|+.. ....||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 45555554444 5554 89999999999999984 4579999999764
No 122
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00014 Score=71.57 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=42.5
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
..+| |.|-||.+.+.+||++.|||+||..|-.+.+. .+..|++|.+...
T Consensus 238 ~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 238 ELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH 286 (313)
T ss_pred ccCC--ccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc
Confidence 4555 88999999999999999999999999998888 4567999987653
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.076 Score=55.79 Aligned_cols=237 Identities=16% Similarity=0.163 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-----hhh----HHHHHHhCCHHHHHHhhCCCChH------HHHHHH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-----ADN----RVAIAEAGAIPLLVGLLSTPDSR------TQEHAV 417 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-----~~~----r~~i~~~g~i~~Lv~lL~s~~~~------i~~~A~ 417 (661)
-.+++.|++.|.+.|.++....+.-|..++..+ .+. -..+++.++++.|++-+..=|.. -..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 456789999999999999999999999887532 222 33456678899999988653333 345667
Q ss_pred HHHHhccC-CCcchhHhhhCCChHHHHHHHccC-C-HHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhc----
Q 006099 418 TALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIG-S-MEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSE---- 489 (661)
Q Consensus 418 ~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~-~-~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---- 489 (661)
..+-|+.. .+.....+++.|.+..|+.-+... . ..-+..|..+|.-+-.+. +++...+.-++|..+++-+.-
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888865 456677888888888877755433 2 344667778887777665 488888888999999888741
Q ss_pred C-----CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh---HHHHHhCCC
Q 006099 490 G-----TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG---KAAIGAAEA 561 (661)
Q Consensus 490 ~-----~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~---~~~i~~~g~ 561 (661)
+ ..+..++-...|+.+...+.|+..++...+++...=+++. ....+..++++|-....++++ ...+++.++
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 2355677788899999999999999988888766655654 344566789999877777764 456677777
Q ss_pred hHHHHHHhh-CC--------C-HHHHHHHHHHHHHHhcC
Q 006099 562 VPVLVEVIG-NG--------S-PRNRENAAAVLVHLCAG 590 (661)
Q Consensus 562 i~~Lv~lL~-~~--------~-~~~ke~A~~~L~~L~~~ 590 (661)
+..+..+.. .+ + ...-++.+.+|+.+-.+
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 777766543 22 2 33456778888777553
No 124
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.047 Score=60.54 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
+..++.|++.|.++|+.+|-.|+..+..|++.+|.|.-.+ -|.+.++|.. .|..+....+...++|+--+.-
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR-- 252 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR-- 252 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch--
Confidence 3568999999999999999999999999999999886544 5889998865 4556666667777888754321
Q ss_pred HhhhCCChHHHHHHHccCC-HHHHHHHHHHHHH--cccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 432 SIVSSGAVPSIVHVLRIGS-MEARENAAATLFS--LSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~--Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
.-...+++|.+++.+.. +.+...++.++.. ++....+...- ..=++..|-.++.+.++..+..++.++..+...
T Consensus 253 --LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as-iqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 253 --LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS-IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred --hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH-HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 12346899999998874 5666666666543 33321111111 112456666677788999999999999998876
Q ss_pred cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh-hCCCHHHHHHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~ke~A~~~L~~L 587 (661)
+..-... --..++++|.+.+..++-.|+.+|.-+..... -.+| +..|+..+ .......|..-+.-+..+
T Consensus 330 Hp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN-l~eI-----Vk~LM~~~~~ae~t~yrdell~~II~i 399 (877)
T KOG1059|consen 330 HPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVSKKN-LMEI-----VKTLMKHVEKAEGTNYRDELLTRIISI 399 (877)
T ss_pred CHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhhhhh-HHHH-----HHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 6433221 12356888999999999999999997765432 2233 23343333 333335677777777777
Q ss_pred hcCCHHHHHHHHHcC-CHHHHHHhhh-cCChHHHHHHHHHHHH
Q 006099 588 CAGDQQYLAEAKELG-VMGPLVDLAQ-NGTDRGKRKAAQLLER 628 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g-~i~~L~~ll~-~~~~~~k~~A~~lL~~ 628 (661)
|+.+. -..+.+-. .+..|+++.+ -|+..+..-|..++..
T Consensus 400 CS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 400 CSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred hhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 87653 22222211 2455555554 2344444444444443
No 125
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.12 E-value=0.016 Score=61.22 Aligned_cols=186 Identities=28% Similarity=0.329 Sum_probs=133.2
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 475 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 475 (661)
..++.++.++.+.+..++..|...+..+. ..-+++.+..+|.+.++.+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 46889999999999999999988865443 455789999999999999999999977665 2
Q ss_pred hcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccH------------HHHHHHH
Q 006099 476 ASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGM------------VDEALAI 542 (661)
Q Consensus 476 ~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~------------~~~al~~ 542 (661)
...+++.|+.++. +.+..++..++.+|..+-... ++..++..+.+..... +..+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 3467899999999 578899999999998886532 3677777776644222 2222222
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHH
Q 006099 543 LAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKA 622 (661)
Q Consensus 543 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A 622 (661)
|.. +.....++.+.+.+.+....+|..|+.+|..+.... ..+.+.+...+.+++..++.++
T Consensus 173 l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 173 LGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHH
Confidence 221 223357889999999888899999999999998765 2234455555555555555555
Q ss_pred HHHHHHHH
Q 006099 623 AQLLERMS 630 (661)
Q Consensus 623 ~~lL~~L~ 630 (661)
...|..+.
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 55555443
No 126
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.10 E-value=0.0011 Score=46.07 Aligned_cols=40 Identities=38% Similarity=0.533 Sum_probs=36.4
Q ss_pred hhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 386 ADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 386 ~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
++++..+.+.|++|.|+.+|++++..++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999999999999999999999873
No 127
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.017 Score=63.26 Aligned_cols=244 Identities=17% Similarity=0.174 Sum_probs=155.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..++.++....+....+|..|..+.+.+...-+..... -++|.++.-+..........++..|+.++......-..
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 34555555555667778888887777765432222111 23566665555446778888999999888776666666
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 513 (661)
.....+|.+.+.|.+..+++++.+..+|..++..-+|... ...+|.|++-+.+.+.... .+ +..|.... -.
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~-e~---~~~L~~tt--FV 362 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTP-EC---LDSLGATT--FV 362 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchH-HH---HHhhccee--ee
Confidence 6788999999999999999999999999999877666551 2456777777765542221 12 22222211 01
Q ss_pred HHHHcCChHHHHhcc----cCCCccHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 514 KAVRAGVVPTLMHLL----TEPGGGMVDEALAILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL----~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
..+..-.+..++.+| ...+..+.+.++.++.|+|.--+....+... ..+|.+-..+.+..|++|.-+..+|..+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 112223333444444 4466778899999999999865444444332 3556666666666799999999999887
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcC
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNG 614 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~ 614 (661)
-..-+.... .+.+|.|.+.....
T Consensus 443 ~e~~g~~~f----~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 443 LERLGEVSF----DDLIPELSETLTSE 465 (569)
T ss_pred HHHHHhhcc----cccccHHHHhhccc
Confidence 654332211 56777777777554
No 128
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00023 Score=70.20 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred cCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 006099 263 RCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 311 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 311 (661)
.|+||..-+.-||.++|+|.||.-||+.-...+..+||+||.+++++.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 5999999999999999999999999999887777899999999986653
No 129
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.048 Score=62.77 Aligned_cols=207 Identities=12% Similarity=0.076 Sum_probs=152.0
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHc-ccCCchhhhhhhcCCcHHHHHhhhcC---CHHHHHHHHHHHHHhhcccC
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSL-SVIDENKVTIGASGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~ 510 (661)
.-|++|-++++|++...|++..-+.+=..+ +.++..+..+++.++-...++.|..+ +++-+..|+.+|..++.+..
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 679999999999999889988777666554 44555677777776666666777663 45788889999999887643
Q ss_pred -chHHHHHcCChHHHHhcccCC-CccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 511 -NKGKAVRAGVVPTLMHLLTEP-GGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 511 -~~~~iv~~g~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
.+....+.+.+...+..|.++ .+-++..++-+|+.|=. .++.|-.=.+.++...|+.+|.+..|++|..|+.+|..+
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 455667888999999999874 56677778888887744 456665556778999999999999999999999999998
Q ss_pred hcCC----HHHHHH-----------HHHcCCHH----HHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 006099 588 CAGD----QQYLAE-----------AKELGVMG----PLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 588 ~~~~----~~~~~~-----------~~~~g~i~----~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
..+. ++.... ..-+..+. .|+.++..+++-++...+..|..+...+..+-...+
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 7752 211111 11122233 677788899999999988888888766655444443
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.005 Score=67.28 Aligned_cols=218 Identities=18% Similarity=0.144 Sum_probs=144.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHH---hccC---CCc
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL---NLSI---CED 428 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~---nLs~---~~~ 428 (661)
.+.-|+....+.+..++..|++.|-.|.....-.+.+ ....++.+++.+..++..|+.++. |..- ..+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3334778888889999999999998887533333322 356778899989999988865554 4431 111
Q ss_pred chhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-----------------------------------------
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----------------------------------------- 467 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~----------------------------------------- 467 (661)
+-+.=....++..+.+.+.+.+..+|..|+.+|..+-..
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 111112345677777777766655555555444433110
Q ss_pred ----------CchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHH
Q 006099 468 ----------DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 537 (661)
Q Consensus 468 ----------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~ 537 (661)
++....|+.+|+-..++.-|.++-.++++.|+..++.|+.+...-. ..++.-|++++.+....++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHH
Confidence 0111235556677777877777778999999999999998655432 23566789999888888999
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 538 EALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 538 ~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
.|+.+|..++.+-. ++..-++.+++.|.+.++.+|+..-.+|.+.
T Consensus 429 ~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988877632 2334567788888888888888776666553
No 131
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.043 Score=61.20 Aligned_cols=269 Identities=17% Similarity=0.144 Sum_probs=172.9
Q ss_pred hHHHHHHHHHccCCHH-HHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCC--CChHHHHHHHHHHHhccC----
Q 006099 354 TKIEILLCKLTSGSPE-DQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLST--PDSRTQEHAVTALLNLSI---- 425 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~-~~~~Al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~---- 425 (661)
+.+..|+.......+. .+..++.+|+.+|.+- ......-.. .++..++.-... ++..+|-.|..+|.|--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444 7788999999999642 222333333 345555554443 477889999999988532
Q ss_pred ---CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHH
Q 006099 426 ---CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 501 (661)
Q Consensus 426 ---~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 501 (661)
++..|..|+ ..+++.-.+.+.+++..|..+|..+.... ++-..-.....+..-+.-+++.++++...++..
T Consensus 208 nF~~E~ern~iM-----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 208 NFNNEMERNYIM-----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hhccHhhhceee-----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 123344443 33445555678899999999998886543 333322333445555566678888888888777
Q ss_pred HHHhhcccCc-----------------hHHHH--HcCChHHHHhcccCCC-------ccHHHHHHHHHH---HhcCChhh
Q 006099 502 LFNLCIYQGN-----------------KGKAV--RAGVVPTLMHLLTEPG-------GGMVDEALAILA---ILSSHPEG 552 (661)
Q Consensus 502 L~nL~~~~~~-----------------~~~iv--~~g~v~~Lv~lL~~~~-------~~~~~~al~~L~---~L~~~~~~ 552 (661)
=.++|...-. +.... -.+++|.|+.+|...+ -...+.|-.+|. .++.++
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-- 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence 6666642211 11111 1367888999886511 123444444444 333322
Q ss_pred HHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 553 KAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 553 ~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
|+. -++|.+-+-+++++.+.++.|+.+...+-.+....+..-+..+++|.++.++.+.+-.+++.+.|.|..+.++
T Consensus 361 ---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 361 ---IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred ---chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 222 2444444555678889999999999999888777777777788999999999988999999999999999887
Q ss_pred HH
Q 006099 633 IE 634 (661)
Q Consensus 633 ~~ 634 (661)
-.
T Consensus 437 l~ 438 (859)
T KOG1241|consen 437 LP 438 (859)
T ss_pred ch
Confidence 64
No 132
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.074 Score=58.37 Aligned_cols=271 Identities=17% Similarity=0.134 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHH-HHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEH-AVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~-A~~~L~nLs~~~~~k~ 431 (661)
....+.+.+.+.+.....+..|...+..+.++ ..-..+.+.+++..|-..+.+......+. +.-+.-....+- .
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---G 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---C
Confidence 35667788888888888999999999988753 23445667788999999988765444443 211111111111 1
Q ss_pred HhhhCCChHHHHHHHcc---CCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006099 432 SIVSSGAVPSIVHVLRI---GSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 507 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~---~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 507 (661)
.-.+.+.++.+-.+|.+ ...++|..|..+.-.+... +.+..+ -.++.++.-+.+..=+.+..++..|..++.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22356666667666654 3467777666555444221 222111 234555554444444677888999999988
Q ss_pred ccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH-----------------------------HHHH-
Q 006099 508 YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-----------------------------AAIG- 557 (661)
Q Consensus 508 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-----------------------------~~i~- 557 (661)
..+..-......++|.+.+.|.+..+++++.+..+|..++..-++- .+++
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 8887777788899999999999999999999999998887632211 1111
Q ss_pred --hCCChHHHHHHhhC----CCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 558 --AAEAVPVLVEVIGN----GSPRNRENAAAVLVHLCAGD--QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 558 --~~g~i~~Lv~lL~~----~~~~~ke~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
+.-.+..++.+|+. .+...+..++.+..|+|.-- +........ -++|.|-..+....|++|.-|..+|..+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 12335566666664 34567889999999999754 333322222 3677777777777899999999999666
Q ss_pred HhhH
Q 006099 630 SRFI 633 (661)
Q Consensus 630 ~~~~ 633 (661)
.+..
T Consensus 443 ~e~~ 446 (569)
T KOG1242|consen 443 LERL 446 (569)
T ss_pred HHHH
Confidence 5443
No 133
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00098 Score=65.02 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=41.4
Q ss_pred CCCccCcCCcccccCCeec-CCCccccHHHHHHHHH-hCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLE-AGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~-~~~~~cP~~~~~l~ 307 (661)
..+-.||+|++.-..|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3556799999999999886 5999999999998876 45689999987654
No 134
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.074 Score=59.46 Aligned_cols=275 Identities=12% Similarity=0.106 Sum_probs=165.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..++++-+.++++||..+..|+.+++.+-.+....+..-...+++|.++.++.++...++..+.|+|+.++..-. ..+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~ 441 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAI 441 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhc
Confidence 567888889999999999999999999887666666666677899999999998888888999999999986522 222
Q ss_pred h----hCCChHHHHHHHccCCHHHHHHHHHHHHHcccC--Cchhhhhhhc----CCcHHHHHhhh----c--C-CHHHHH
Q 006099 434 V----SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGAS----GAIPPLVTLLS----E--G-TQRGKK 496 (661)
Q Consensus 434 ~----~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~----g~i~~Lv~lL~----~--~-~~~~~~ 496 (661)
. ..+.+..++.-|+ ..|.+..+++|++.+|+.. +..... ++. .+.+.++.-|- . + ....+.
T Consensus 442 ~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred ccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHH
Confidence 2 2344444444443 2578889999999999832 111111 111 23333333332 1 1 245677
Q ss_pred HHHHHHHHhhcccCchHHHHHcCChHHHHh---------cccCCC----ccHHHHHHHHHHHhcC-ChhhHHHHHhCCCh
Q 006099 497 DAATALFNLCIYQGNKGKAVRAGVVPTLMH---------LLTEPG----GGMVDEALAILAILSS-HPEGKAAIGAAEAV 562 (661)
Q Consensus 497 ~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~---------lL~~~~----~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i 562 (661)
.|-.+|..|..+...-..-.-.+.....+. .+...+ .+++..-+.+|..+-. .+..+..+.+ ..+
T Consensus 520 AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM 598 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIM 598 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHH
Confidence 788899988776554322111222222222 222111 2344444555543322 1222223332 356
Q ss_pred HHHHHHhhC-CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHhhHHH
Q 006099 563 PVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 563 ~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~~~~~ 635 (661)
..+++++.+ ++..+.+.|..++..+...-+ .+.+.+ +.+.|-|..-+.+. +..+.-.|..+...+++.-+.
T Consensus 599 ~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 599 GLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 677788876 455567777666666654322 233333 23566666666443 566777888888888875544
No 135
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.81 E-value=0.054 Score=54.58 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChhhHHHH-HHhCCHHHHHHhhCC--CChHHHHHHHHHHHhccCCCcchhHhh-hCCCh
Q 006099 364 TSGSPEDQRSAAGEIRLLAKRNADNRVAI-AEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIV-SSGAV 439 (661)
Q Consensus 364 ~s~~~~~~~~Al~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i 439 (661)
++-++-.+.-|++++.++.. .++.|..+ ++...-..++..++. ++.++|.+.+-+++.|+.+......|- -...+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33455577888899999875 67777665 445567788888877 478999999999999988765553333 23456
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHcccCC--chhhhhhhcCCcHHHHHhhhcC---CHHHHHHHHHH---H----HHhh
Q 006099 440 PSIVHVLRIG-SMEARENAAATLFSLSVID--ENKVTIGASGAIPPLVTLLSEG---TQRGKKDAATA---L----FNLC 506 (661)
Q Consensus 440 ~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~a---L----~nL~ 506 (661)
..++.+.+.. ...+.+-+++++.+++.-. .+-..+.-.|-+.+-+++|..+ +++.+...-.+ | ..|+
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 6677777665 3456677888888887522 2233334446667777777653 33333221111 0 0111
Q ss_pred c---------------c---------cCchHHHHH--cCChHHHHhcccCCCcc--HHHHHHHHHHHhcCChhhHHHHHh
Q 006099 507 I---------------Y---------QGNKGKAVR--AGVVPTLMHLLTEPGGG--MVDEALAILAILSSHPEGKAAIGA 558 (661)
Q Consensus 507 ~---------------~---------~~~~~~iv~--~g~v~~Lv~lL~~~~~~--~~~~al~~L~~L~~~~~~~~~i~~ 558 (661)
. . ..|..++.+ ..++..|..++...++. +.-++-.+..-+-..|+++..+..
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 1 1 123334443 34788899999774443 333344444555668999999999
Q ss_pred CCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 559 AEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 559 ~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
.|+=..+++++.++++++|-+|..++..+.
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 136
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00051 Score=77.24 Aligned_cols=47 Identities=32% Similarity=0.721 Sum_probs=41.7
Q ss_pred CCCccCcCCcccccC-----CeecCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 259 PDDFRCPISLELMKD-----PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-----Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|+.+ ..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 346789999999998 788999999999999999994 77999999844
No 137
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00076 Score=66.42 Aligned_cols=47 Identities=19% Similarity=0.585 Sum_probs=39.2
Q ss_pred ccCcCCccccc--CC-eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 262 FRCPISLELMK--DP-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 262 f~CpIc~~~m~--dP-v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
..|.||+.-+. |- +++||.|.|.+.|+.+|+......||+|+.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999998664 33 3579999999999999999777899999988763
No 138
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.76 E-value=0.037 Score=50.83 Aligned_cols=139 Identities=13% Similarity=0.145 Sum_probs=109.3
Q ss_pred HHHHHcCChHHHHhcccCCC------ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC--CHHHHHHHHHHH
Q 006099 513 GKAVRAGVVPTLMHLLTEPG------GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVL 584 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~------~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ke~A~~~L 584 (661)
..+++.|++..|+.++.++. .++...++.++..|-.+.-.-=.......+..++.++... ++.+...|..+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 46788899999999998744 4677888999999988764222445556788888888753 478889999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH-hhHHHHHHHHhhhhhHHHhhh
Q 006099 585 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS-RFIEQQKQAQVQTESQSQIQE 651 (661)
Q Consensus 585 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~-~~~~~~~~~l~~~~~~~~l~~ 651 (661)
-++..+++.....+.+.=-++.|+..++.+++..+.+|..++-.|- +.++..++.+++.-...++..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~R~ 152 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQKQIRQ 152 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999998877777777767999999999999999999999998765 445666677777666666543
No 139
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0011 Score=66.97 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=40.4
Q ss_pred CCCccCcCCcccccC-------------CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKD-------------PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-------------Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.++-.|.||++-|.. |-.++|||.+.-+|+..|+. ...+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 467789999987543 46799999999999999998 6789999999853
No 140
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.70 E-value=0.079 Score=58.90 Aligned_cols=232 Identities=19% Similarity=0.200 Sum_probs=142.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh--hHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc-ch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD--NRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~-~k 430 (661)
..+..++..|++..+.++.+|+..+..++.--.. --..+...| -.|.+.|...++++.-..+.+|..+...-. .+
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 4566778888999999999999999888752111 112233334 356778888888887665555555532211 11
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc---CCcHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLCI 507 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 507 (661)
..---.|.+|.|..+|++....++++++..+..++....- .+... ..-=-|+++|+..+.+++..|..++..++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE--~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE--YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1111468899999999999999999999999999866432 22222 222357777888888888888777777653
Q ss_pred ccC------------------chH------HHH-H-cCC---hHHHHhcccCCCccHHHHHHHHHHHhcCC--hhhHHHH
Q 006099 508 YQG------------------NKG------KAV-R-AGV---VPTLMHLLTEPGGGMVDEALAILAILSSH--PEGKAAI 556 (661)
Q Consensus 508 ~~~------------------~~~------~iv-~-~g~---v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~~~~~~i 556 (661)
--+ +|. .++ + .|- +|+|+.=-..++..++.-.+.+|.-+-.. +-++.-+
T Consensus 955 aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 211 111 122 1 232 33333333336666666666665544332 1122222
Q ss_pred HhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 557 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 557 ~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
. .+.|.|-+.|.+.++--|.-|+.++.+|+-+.
T Consensus 1035 y--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1035 Y--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred H--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 2 25666777777777777888888888887654
No 141
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.69 E-value=0.027 Score=51.45 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred CchhhhhhHHHHHHHHHhhhhhhHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHhhhHHHHHHHH
Q 006099 24 DYRGTVKKQYCNLARRLKLLTPMFEEIKESKEAIPEETSKALVSLKEALASAKELLRFGSEGSKIYLVLERGEIMTKFYE 103 (661)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~leel~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sk~~~~~~~~~~~~~~~~ 103 (661)
+.....|..+..|..-+..|.|+++|+...+..++.+-..-++.|...|++++.|++.|++.++ |=+.+-..+..+.++
T Consensus 27 ~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r-~n~~kk~~y~~Ki~~ 105 (147)
T PF05659_consen 27 KKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRR-WNLYKKPRYARKIEE 105 (147)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccH-HHHHhhHhHHHHHHH
Confidence 3345567778889999999999999998876666666688899999999999999999998874 444466667777777
Q ss_pred HHHHHHHHHhh-ccC
Q 006099 104 VTAQLEQALSA-ISY 117 (661)
Q Consensus 104 ~~~~l~~~l~~-~~~ 117 (661)
+-.+|.+-++. +|+
T Consensus 106 le~~l~~f~~v~~q~ 120 (147)
T PF05659_consen 106 LEESLRRFIQVDLQL 120 (147)
T ss_pred HHHHHHHHhcchhHH
Confidence 77777666552 443
No 142
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.69 E-value=0.029 Score=51.55 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=99.1
Q ss_pred hhhhhcCCcHHHHHhhhcCCH------HHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC--CCccHHHHHHHHH
Q 006099 472 VTIGASGAIPPLVTLLSEGTQ------RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGMVDEALAIL 543 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~~~------~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~~~al~~L 543 (661)
......|++..|++++.++.. +....++.++..|..++-.-...+....|..++.++.. .+..+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345677999999999999873 66778899999998877656677778888889888865 3688999999999
Q ss_pred HHhcCChhhHHH-HHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 544 AILSSHPEGKAA-IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 544 ~~L~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
.++..++...-. +.+.=-++.|+..|+.+++..+.+|++.+..|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 999988777544 4444568999999999999999999999999876655
No 143
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.078 Score=60.96 Aligned_cols=215 Identities=19% Similarity=0.184 Sum_probs=144.7
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
+..+-+...|.. +++.+|.-|+..+..++. +.+.-..+++.|.+..|+.+|.+ -+..++.++.+|..|+...+.-..
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHH
Confidence 344445555543 677889999998887764 77777888999999999999976 677888899999999888766555
Q ss_pred hhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCc------------------------------------------
Q 006099 433 IVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDE------------------------------------------ 469 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~------------------------------------------ 469 (661)
-++.|++.-|..++-.. ++..|..++..|..|..+.-
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccc
Confidence 56777777777666443 45556666655555422110
Q ss_pred --------------------------------------------------------------------------------
Q 006099 470 -------------------------------------------------------------------------------- 469 (661)
Q Consensus 470 -------------------------------------------------------------------------------- 469 (661)
T Consensus 1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------hhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcC
Q 006099 470 ------------------------------NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG 519 (661)
Q Consensus 470 ------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g 519 (661)
-..++...|.+|.++..+...+..+-..|++.|+.|+.+.-....|....
T Consensus 2009 lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLP 2088 (2235)
T ss_pred HHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccc
Confidence 00012222444444444444444444677888888888777777788777
Q ss_pred ChHHHHhcccCCCccHHHHHHHHHHHhcCCh--hhHHHHHhCCChHHHHHHhhC
Q 006099 520 VVPTLMHLLTEPGGGMVDEALAILAILSSHP--EGKAAIGAAEAVPVLVEVIGN 571 (661)
Q Consensus 520 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~ 571 (661)
++..+++.+.. .....--|+.+|..+.... +-.......|.+|.|+.+|..
T Consensus 2089 ~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2089 CIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred cchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 77778887754 3455567888888776533 333556678999999999974
No 144
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.008 Score=64.21 Aligned_cols=196 Identities=13% Similarity=0.071 Sum_probs=141.1
Q ss_pred HHHHHHhccCC-CcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcCCHH
Q 006099 416 AVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQR 493 (661)
Q Consensus 416 A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~ 493 (661)
++..|..++.. .--|.-+....+.++|+.+|.++...+.--+...++|+... ..-+..+...|+|..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34445555543 23466677888999999999886544445556667776554 45578888999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCch--HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh----hHHHHHhC----CChH
Q 006099 494 GKKDAATALFNLCIYQGNK--GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE----GKAAIGAA----EAVP 563 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~--~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~----~~~~i~~~----g~i~ 563 (661)
.+.+..|.|..+..+..+- -+.+..-++..++.+..++.-.+++.++.+|.|+..+.. .+..+... -...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 9999999999999886654 466777889999999999999999999999999976322 22222221 1355
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhh
Q 006099 564 VLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLA 611 (661)
Q Consensus 564 ~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll 611 (661)
.|++.+...+|-.-+..+.+|.+++..++.-...+.. ...+..+.+++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 6777777888888888899999988777644444433 23333333333
No 145
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.61 E-value=0.0052 Score=42.61 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=36.0
Q ss_pred hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 550 PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 550 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
++.+..+.+.|+++.|+++++++++.++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467888999999999999998899999999999999873
No 146
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.59 E-value=0.1 Score=56.95 Aligned_cols=233 Identities=19% Similarity=0.206 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh--hhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA--DNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k 430 (661)
...+..++..|++..+.++..|+.....+++--. .-...+...| -.|.+.|...++++.-..+.++..+...-..+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 3577888999999999999999988888764211 1112333334 34566777778888766666666553321111
Q ss_pred -hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc---CCcHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006099 431 -GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLC 506 (661)
Q Consensus 431 -~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 506 (661)
-+---.|.+|.|..+|++....+..+.+..+..++...+. .++.. ..--.|+++|++.+.+++.+|..++..++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe--yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE--YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 1112478999999999999889999999999988876532 12111 22235777788888888888877777765
Q ss_pred cccCc------------------hH------HHH-H-cCC---hHHHHhcccCCCccHHHHHHHHHHHhcCChh--hHHH
Q 006099 507 IYQGN------------------KG------KAV-R-AGV---VPTLMHLLTEPGGGMVDEALAILAILSSHPE--GKAA 555 (661)
Q Consensus 507 ~~~~~------------------~~------~iv-~-~g~---v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~~~~ 555 (661)
.--+. |. .++ + .|- +|.|+.=-..++..++.-.+.+++-+-..-. .+..
T Consensus 759 ~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 759 RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 32111 10 111 1 232 2333332233555666665555553332211 1111
Q ss_pred HHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 556 IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 556 i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
+. ...|.|-+.|.+.++--|..|..++..|.-+.
T Consensus 839 vy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 839 VY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 11 24566666666667777888888887776554
No 147
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.012 Score=64.42 Aligned_cols=214 Identities=19% Similarity=0.145 Sum_probs=134.1
Q ss_pred HHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC------chhhhh
Q 006099 401 LVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID------ENKVTI 474 (661)
Q Consensus 401 Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~------~~~~~i 474 (661)
|+.+..+.|..++.+|+..|+.|+..-.- ..-.....++.+.+.+..+|..|+.+++-.+... ++-..-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 67777788999999999999888752111 2223455677887778888888876665543322 111111
Q ss_pred hhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc----------------------------------------------
Q 006099 475 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY---------------------------------------------- 508 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---------------------------------------------- 508 (661)
....++..+.+.+.+.+-.++..|+.+|..+-..
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 1224566666666666555555555555443210
Q ss_pred -----cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHH
Q 006099 509 -----QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 583 (661)
Q Consensus 509 -----~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~ 583 (661)
++....++..|+-.+++.-|.+.--+++..|+..+..|+.+..+-. ..++..|++++.+.-..+|..|..+
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~a 433 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIFA 433 (823)
T ss_pred chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0111235556666777777776667899999999999987543221 1257788999988778899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 584 LVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 584 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
|..|..+- .+++..++.+..-+.+.+.++++....+|++.
T Consensus 434 L~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 434 LTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 98887652 22333445555555555555655555555544
No 148
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.56 E-value=0.034 Score=61.68 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=107.9
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH---HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHH
Q 006099 480 IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG---KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAI 556 (661)
Q Consensus 480 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~---~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i 556 (661)
+..++..|++.++.++..|+..+..|+..-.++. .+...|+| |...|....+++.-..+.+|..+...-......
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 4556667788899999999999988876544443 33344543 777787788888887777777555422111000
Q ss_pred -HhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 557 -GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 557 -~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
--.+.+|.|..+|++....++++++..+..+|..+++++..--=..+---|++++......+++.|...+..+++.
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 0136899999999999999999999999999998886432211112344577888888999999999999888764
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.50 E-value=0.0012 Score=69.63 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=44.3
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHH----hCCCCCCCCCCCCcCCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE----AGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~----~~~~~cP~~~~~l~~~~ 310 (661)
.++..|.+|.++-.||+...|.|+|||.||.+++. ..+-+||.|...++-..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34578999999999999999999999999998886 34579999988887543
No 150
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.49 E-value=0.098 Score=50.94 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=125.0
Q ss_pred HHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-----CHHHHHHHHHHHHHcccCCc--hhhhhhhcCCcHHHHHh
Q 006099 414 EHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-----SMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTL 486 (661)
Q Consensus 414 ~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l 486 (661)
-+|+..|--++.+++.|..+..+..---+-.+|..+ .+-+|-.+.+++..|...++ ....+...+++|..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 466666666788999999999887777777777543 35688899999999988764 45567778999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcccCchHHHH-------H-cCChHHHHhcc-cCCCccHHHHHHHHHHHhcCChhhHHHHH
Q 006099 487 LSEGTQRGKKDAATALFNLCIYQGNKGKAV-------R-AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIG 557 (661)
Q Consensus 487 L~~~~~~~~~~a~~aL~nL~~~~~~~~~iv-------~-~g~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 557 (661)
+..|++..+.-|..++..+..++.+-..+- . .-.+..++..| +.++..+.++++++..+|+.++..|..+.
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998887776543222 1 12333343333 44889999999999999999999887775
Q ss_pred hC--CCh--HHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 558 AA--EAV--PVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 558 ~~--g~i--~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
.. ..+ .....+++ .++..+..-...+.++|.
T Consensus 257 ~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 257 SCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred hhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 41 111 11222333 345556666666666664
No 151
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.26 Score=54.91 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcch
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNK 430 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k 430 (661)
.++....++.+|.+.-+.++.+|+..+..+.-.-++.- ....|.|++-|.++|+.++..|+.+++.|+. ++.|-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 35677889999999999999999999988876554431 1346999999999999999999999999986 45554
Q ss_pred hHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCC-HHHHHHHHHHHH--Hhh
Q 006099 431 GSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALF--NLC 506 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~--nL~ 506 (661)
-. .-|.+.++|.+. +.=+....+..+.+|+-.++- + ....+++|.+++.+.. ..+...++.++. +++
T Consensus 217 L~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR---L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 217 LQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR---L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred cc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCch---h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 33 246677777554 333455667778888766541 1 1246799999998754 334444444433 344
Q ss_pred cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHH
Q 006099 507 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 585 (661)
Q Consensus 507 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~ 585 (661)
....+....+. -+++.|-.++.+.++.+.--++-++..+.. ++...++. -..++..|.+.++.+|-.|+..|.
T Consensus 288 ~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence 44334433332 367888888988999999888888887665 44433332 346778888889999999999998
Q ss_pred HHhcCC
Q 006099 586 HLCAGD 591 (661)
Q Consensus 586 ~L~~~~ 591 (661)
-+....
T Consensus 362 gmVskk 367 (877)
T KOG1059|consen 362 GMVSKK 367 (877)
T ss_pred HHhhhh
Confidence 887643
No 152
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.12 Score=55.86 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 572 GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 572 ~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.+..+|..|+.+|...+.+-.. .+....+...|...+.+.++.+++.|..+|++|...
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 3456677888888666543221 011122455667778888999999999999999843
No 153
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.34 E-value=0.022 Score=54.62 Aligned_cols=123 Identities=17% Similarity=0.104 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHhhcccCchHHHHHc----------------CChHHHHhcccC------CCccHHHHHHHHHHHhcC
Q 006099 491 TQRGKKDAATALFNLCIYQGNKGKAVRA----------------GVVPTLMHLLTE------PGGGMVDEALAILAILSS 548 (661)
Q Consensus 491 ~~~~~~~a~~aL~nL~~~~~~~~~iv~~----------------g~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~ 548 (661)
+......++..|.||+..++....++.. ..+..|+.++.. ....-.++...+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3445567888999999988877755532 256778887755 234567889999999999
Q ss_pred ChhhHHHHHhC--CC--hHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHhhhc
Q 006099 549 HPEGKAAIGAA--EA--VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE--LGVMGPLVDLAQN 613 (661)
Q Consensus 549 ~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~ 613 (661)
.+++|..+.+. +. +..|+.+..+.+..-|.-++.+|.|+|...+.+...+.+ .+++|.|+.-+..
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 99999999875 34 778888888787777888999999999987766555543 3678887777763
No 154
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.33 E-value=0.0022 Score=66.75 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=39.0
Q ss_pred CCCCCccCcCCcccccCCe----ecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 257 VIPDDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv----~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.+-+--+||+|++-|.+-+ .+.|.|+|-..|+.+|+. .+||+||.-.+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 3444558999999998765 358999999999999964 68999987655
No 155
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.16 Score=59.67 Aligned_cols=237 Identities=14% Similarity=0.164 Sum_probs=136.0
Q ss_pred CCCChHHHHHHHHHHHhccCCCcchhHhhh--CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhhhhhhcCCcH
Q 006099 406 STPDSRTQEHAVTALLNLSICEDNKGSIVS--SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGASGAIP 481 (661)
Q Consensus 406 ~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~ 481 (661)
++.+..+|..+..+|..++..+........ ......+..-+++....++...+.+|..|-.... +...+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 345788999999999998766333222211 1122223333333344555555555555443322 22221 13344
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcC------ChHHHHhcccCC--CccHHHHHH--HHHHHhcCChh
Q 006099 482 PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAG------VVPTLMHLLTEP--GGGMVDEAL--AILAILSSHPE 551 (661)
Q Consensus 482 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g------~v~~Lv~lL~~~--~~~~~~~al--~~L~~L~~~~~ 551 (661)
-++-.++..+...++.|..+|.+++. .....+.| .+...+..+..+ +......|. -++..+...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e-- 815 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE-- 815 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence 44444477788999999999998873 11111111 333333333321 122222222 222222211
Q ss_pred hHHHHHhC----CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHH
Q 006099 552 GKAAIGAA----EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLE 627 (661)
Q Consensus 552 ~~~~i~~~----g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~ 627 (661)
...+.+. +.+..+..+|.++++.+...|+..+..++..-|+.+..-...-+++.+..+++.++...+.+...+|.
T Consensus 816 -~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 -FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1112222 34555666677889999999999999999888877766666668999999999999999999999999
Q ss_pred HHHhhH-HHHHHHHhhhhhHHHhhh
Q 006099 628 RMSRFI-EQQKQAQVQTESQSQIQE 651 (661)
Q Consensus 628 ~L~~~~-~~~~~~l~~~~~~~~l~~ 651 (661)
.|.+.. .+.-+.+..++...-|+.
T Consensus 895 kLirkfg~~eLe~~~pee~~klL~n 919 (1176)
T KOG1248|consen 895 KLIRKFGAEELESFLPEEDMKLLTN 919 (1176)
T ss_pred HHHHHhCHHHHHhhCHHHHHHHHHH
Confidence 876543 444444444555544444
No 156
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.14 Score=57.64 Aligned_cols=249 Identities=16% Similarity=0.116 Sum_probs=139.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC---------------CChHHHHHHHH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST---------------PDSRTQEHAVT 418 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s---------------~~~~i~~~A~~ 418 (661)
..+......|++.+..+-..++..+..+++.++++-..+.+ .++.|+..|+. .|+-+|...++
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 34455556666666666666666666777666665555544 55666665531 35777877777
Q ss_pred HHHhccCCCcchhHhhhCCChHHHHHHHccC------CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCH
Q 006099 419 ALLNLSICEDNKGSIVSSGAVPSIVHVLRIG------SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ 492 (661)
Q Consensus 419 ~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 492 (661)
.|.-|-.++..-...+. ..|.++..+. ...+...++.++..+-....-+.. ++..|-++|.+.+.
T Consensus 257 lLriLGq~d~daSd~M~----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMN----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRDN 327 (866)
T ss_pred HHHHhcCCCccHHHHHH----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCcc
Confidence 77777665433222211 1222333211 123444555555555433332222 34555566666666
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC
Q 006099 493 RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG 572 (661)
Q Consensus 493 ~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~ 572 (661)
.++..|+..|..+...+++..+=-+ ..++..|+++|..++..|+.++..|......+. .+..|+++|...
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELLEFLESS 397 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHHHHHHhc
Confidence 6666666666666655554332111 346778888888888999988887776544332 245677777777
Q ss_pred CHHHHHHHHHHHHHHhcC-CHHHH------H-------HHHHcCCHHHHHHhhhcCChHHHHHHH
Q 006099 573 SPRNRENAAAVLVHLCAG-DQQYL------A-------EAKELGVMGPLVDLAQNGTDRGKRKAA 623 (661)
Q Consensus 573 ~~~~ke~A~~~L~~L~~~-~~~~~------~-------~~~~~g~i~~L~~ll~~~~~~~k~~A~ 623 (661)
++..|...+.-+..++.. .|..+ . ..+...++..++.++.++.+...+.+.
T Consensus 398 d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~ 462 (866)
T KOG1062|consen 398 DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAV 462 (866)
T ss_pred cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHH
Confidence 777777766666665532 22111 1 112345677788888777444443333
No 157
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.24 E-value=0.024 Score=48.07 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHh--hCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 006099 535 MVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVI--GNGSPRNRENAAAVLVHLCAGDQQYLAEAKEL 601 (661)
Q Consensus 535 ~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL--~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~ 601 (661)
.+...+.+|+|||... ..+..+.+.|++|.++..- +..+|-.+|+|.+++.+||.+++++...+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999754 6778888889999998865 35679999999999999999999888777553
No 158
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.22 E-value=0.017 Score=60.13 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=44.3
Q ss_pred ccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc
Q 006099 262 FRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~ 313 (661)
+.|.|++++-.+||+- .+||.|+|+-|++++. .+.+||+++++++..++.+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCHHHeee
Confidence 4699999999999985 5899999999999998 5568999999998666654
No 159
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.22 E-value=0.78 Score=52.63 Aligned_cols=142 Identities=16% Similarity=0.104 Sum_probs=108.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
...+.+++.+.+.|.+.++-.-.-|...++.+++- ..+ +++.+.+=++++|+.+|-.|++.|..+=.. =
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~------e 123 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVK------E 123 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChH------H
Confidence 34566666666777777777666777777765522 111 467888888999999999999998766321 1
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+-..+++++.+.+.++++.+|..|+-++.++-.. .+....+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus 124 l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2244688899999999999999999999998543 344556678999999999999999999999999988654
No 160
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.07 Score=59.91 Aligned_cols=244 Identities=17% Similarity=0.096 Sum_probs=151.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
...+..+..+.+.|.+.+.-.---+.+.+...+.- ..+++..++.=..++++.+|.-|++.++.+-.+.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~------ 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK------ 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH------
Confidence 45667777777777666666666677777655442 2356778888788889999998888776654321
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-h
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-K 512 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~ 512 (661)
+..-...++...++++++.+|..++....++- +.+.......|.++.|-.++.+.++.+..+|+.+|..+...+.+ .
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 12335678889999999999999988888874 44556666779999999999999999999999999999876653 1
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
...+..-.+..++..+..-+..-+...+.++.+-.-.++ +.+. ..+..+...|++.++.+...++.++.++...-+
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 111112233334444433333333344444443333222 1111 123445555566666666666666666654433
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCC
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGT 615 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~ 615 (661)
. .....-..+.++|+.++....
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc
Confidence 3 222222234555555555444
No 161
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.18 E-value=0.14 Score=58.58 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=134.3
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHH-HHHHHHHhccCCCcc
Q 006099 351 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQE-HAVTALLNLSICEDN 429 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~-~A~~~L~nLs~~~~~ 429 (661)
++...+..+++.|.+.+.++|..|+++|.-+++.-++.+-.- .+..|..-+-++....+. .++....-++.-...
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 356789999999999999999999999999985444433211 233343332233333332 222222222222222
Q ss_pred hhHhhhCCChHHHHHHHccC------CHHHHHHHHHHHHHccc-CCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHH
Q 006099 430 KGSIVSSGAVPSIVHVLRIG------SMEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~------~~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
-.......+.+.+...|..+ ...++..++..+...-. ....-.. ...+.+..++.-+.+....+++.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 23333455556666655432 12244444444433211 1110000 1224445555555566677899999999
Q ss_pred HHhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh---hCCCHHHHH
Q 006099 503 FNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI---GNGSPRNRE 578 (661)
Q Consensus 503 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~ke 578 (661)
..|+...++- .-.+++..|++=|.. ..+.....-..+|+.+|.....|.--.-...+|.+.++. ...+++.|+
T Consensus 199 ~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 9998865432 234566677777755 334444445556666654433332112224688888888 567789999
Q ss_pred HHHHHHHHHhcCCHHHH
Q 006099 579 NAAAVLVHLCAGDQQYL 595 (661)
Q Consensus 579 ~A~~~L~~L~~~~~~~~ 595 (661)
.+..++..+....|...
T Consensus 276 ~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHHHHHHHhChhhh
Confidence 99999988877666433
No 162
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.19 Score=55.79 Aligned_cols=264 Identities=17% Similarity=0.120 Sum_probs=153.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCC--hHHHHHHHHHHHhccCCCcch
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPD--SRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~--~~i~~~A~~~L~nLs~~~~~k 430 (661)
+..+..+...|.+.|+..+.-|+..+.++.. -+.+..+. .-|| ++|.+++ .-++..|+-+|+.|-.. +.
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--sp 180 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--SP 180 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--Cc
Confidence 4566777888888999999999999998853 33333332 2344 5665543 34555555566666433 22
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhhhhhhcCCcHHHHHhhhcC-------------CHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTLLSEG-------------TQRGK 495 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~-------------~~~~~ 495 (661)
+.+-..+-...++++|++.+..+...+...+..|+...+ ++..+. -++..|..+.... .|=..
T Consensus 181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 333345678889999988877777777777777765532 333221 1222222222211 23334
Q ss_pred HHHHHHHHHhhcccC--chHHHHHcCChHHHHhcccC--CCc-----cHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 006099 496 KDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLLTE--PGG-----GMVDEALAILAILSSHPEGKAAIGAAEAVPVLV 566 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~--~~~~iv~~g~v~~Lv~lL~~--~~~-----~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv 566 (661)
...+++|.+.=...+ .+.++.+ +...++..... ... ..+...+.-..+|+.+-+.-..+.. .++..|-
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg 335 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLG 335 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHH
Confidence 455666655522222 2333332 34444444432 111 2223333333355554333322222 3678888
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHhhH
Q 006099 567 EVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 567 ~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.+|.+..+.+|--|...+..||.... ....++.. ...++..++ ..+..++++|+.+|..|++..
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 89988888899999999999988643 33333333 566677777 568899999999999999754
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.10 E-value=0.036 Score=47.06 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh--cCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhH
Q 006099 577 RENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ--NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 646 (661)
Q Consensus 577 ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~ 646 (661)
|...+.+|.++|..++..+..+.+.|+++.+++... ..+|-+++.|.+++++|+..+++.+..+++=+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~ 74 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQ 74 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcccc
Confidence 567889999999999999999999999999998865 4489999999999999999999988888764443
No 164
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.09 E-value=0.0087 Score=44.77 Aligned_cols=55 Identities=27% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006099 451 MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505 (661)
Q Consensus 451 ~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 505 (661)
+.+|..|+++|.+++........-.....++.|+.+|++.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887665555556668999999999999999999999999876
No 165
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.36 Score=52.44 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=167.5
Q ss_pred hHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHHHHHhCCH--HHHHHhhCC-CChHHHHHHHHHHHh-ccC---
Q 006099 354 TKIEILLCKLTSGS-PEDQRSAAGEIRLLAKRNADNRVAIAEAGAI--PLLVGLLST-PDSRTQEHAVTALLN-LSI--- 425 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~-~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~s-~~~~i~~~A~~~L~n-Ls~--- 425 (661)
+.+..++.....+. ...++.++..+.+++. +......+...+.| .....-++. .+..+|..|+.+|.+ |-.
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554433 3568889999999885 33334444444432 333334444 467888889999887 321
Q ss_pred ---CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHH
Q 006099 426 ---CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 501 (661)
Q Consensus 426 ---~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 501 (661)
.+.+|..++ ...++.-+..+.+++..|..+|..+.... .......+.-......+.+++.+.++...|+..
T Consensus 212 nf~~E~erNy~m-----qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 212 NFCYEEERNYFM-----QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred hhcchhhhchhh-----eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 233444433 33445555668889999999998876543 333344444445556666778888888777655
Q ss_pred HHHhhcccC---------------ch--HHHHHcCChHHHHhcccCCC-------ccHHHHHHHHHH---HhcCChhhHH
Q 006099 502 LFNLCIYQG---------------NK--GKAVRAGVVPTLMHLLTEPG-------GGMVDEALAILA---ILSSHPEGKA 554 (661)
Q Consensus 502 L~nL~~~~~---------------~~--~~iv~~g~v~~Lv~lL~~~~-------~~~~~~al~~L~---~L~~~~~~~~ 554 (661)
-..+|...- |. .+..-.+++|.|+.+|...+ -.+...|..+|. .++.+.
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---- 362 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---- 362 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH----
Confidence 544443211 11 11123458899999996521 123344444444 444332
Q ss_pred HHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 555 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 555 ~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
|++. ++..+-.-+++.+...++.|+.++..+-.+..+.+..-.-..++|.+...+.+..-.++..++|++..++++-
T Consensus 363 -i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 363 -IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred -hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 2221 3333334456778889999999999998877666655566678999999999889999999999999998765
No 166
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.06 E-value=0.12 Score=59.15 Aligned_cols=269 Identities=15% Similarity=0.131 Sum_probs=154.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhC
Q 006099 358 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSS 436 (661)
Q Consensus 358 ~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~ 436 (661)
.|++++.+.|.+.+.-|+..|..--..+.-+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.- .+.+- .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 788999999999998888877553322211111112335788999999999999999999999988732 11111 1
Q ss_pred CChHHHHHHHccCCHHHHHH-HHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC-----C-HHHHHHHHHHHHHhhccc
Q 006099 437 GAVPSIVHVLRIGSMEAREN-AAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG-----T-QRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 437 g~i~~Lv~lL~~~~~e~~~~-a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-----~-~~~~~~a~~aL~nL~~~~ 509 (661)
..++.|..-+-++....+.. +......++...+.........+++.+...+..+ + ..++..++..++.+-..-
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 11222333222333344433 3333334444444333344445555555555543 2 235566666666544332
Q ss_pred CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHh
Q 006099 510 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLC 588 (661)
Q Consensus 510 ~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~ 588 (661)
+.-.-=...++...++.-|.++...+++.|+.+|+.|+..-..- ... +.+..|++-|.. ..+....--+.+|..+|
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~ 241 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-LYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAIC 241 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-HHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 21110134566677788888888899999999999887643211 111 233344443332 23333344456667777
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhh---hcCChHHHHHHHHHHHHHHhhHH
Q 006099 589 AGDQQYLAEAKELGVMGPLVDLA---QNGTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 589 ~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~k~~A~~lL~~L~~~~~ 634 (661)
...+... --.-...+|.+.++. ...+++.++....++..+-.+.+
T Consensus 242 r~ag~r~-~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 242 RQAGHRF-GSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHhcchh-hcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 6543111 111124678888887 67789999999999998876554
No 167
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.56 Score=53.08 Aligned_cols=244 Identities=13% Similarity=0.095 Sum_probs=133.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~ 432 (661)
+..+...+.+++.++.++.+|+-+...+....|+--. .+++...++|.+.+..+...++..+..++.. +++-..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 5566667777778888888888877777655554332 3456666777777766666666666666653 222222
Q ss_pred hhhCCChHHHHHHHcc---------------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHH
Q 006099 433 IVSSGAVPSIVHVLRI---------------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKD 497 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~---------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 497 (661)
.-+ .++.++..|+. .+|-++...+++|.-|- .++.+....
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG-----------------------q~d~daSd~ 271 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG-----------------------QNDADASDL 271 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc-----------------------CCCccHHHH
Confidence 111 45555555532 12334444444444444 444444444
Q ss_pred HHHHHHHhhcccC---chHHHHHcCC-----------------hHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH
Q 006099 498 AATALFNLCIYQG---NKGKAVRAGV-----------------VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG 557 (661)
Q Consensus 498 a~~aL~nL~~~~~---~~~~iv~~g~-----------------v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 557 (661)
...+|..++.+.+ |....+=..+ +..|-++|.+.+..++-.|+..|..+...+.....=.
T Consensus 272 M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 272 MNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH 351 (866)
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH
Confidence 4444444444322 1111111122 2334445555555555555555544433322111100
Q ss_pred hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh-hHHHH
Q 006099 558 AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR-FIEQQ 636 (661)
Q Consensus 558 ~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~-~~~~~ 636 (661)
=..+++.|++.++.+|..|...+..|...+ ++.. .+.-|+.++.+.++..|...+.-+..+.+ +.+..
T Consensus 352 ----r~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k 420 (866)
T KOG1062|consen 352 ----RSTILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDK 420 (866)
T ss_pred ----HHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc
Confidence 135677888889999999999999887654 3333 35567788877788877665555555543 33443
Q ss_pred HH
Q 006099 637 KQ 638 (661)
Q Consensus 637 ~~ 638 (661)
++
T Consensus 421 ~W 422 (866)
T KOG1062|consen 421 RW 422 (866)
T ss_pred hh
Confidence 33
No 168
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0057 Score=61.33 Aligned_cols=53 Identities=23% Similarity=0.499 Sum_probs=44.9
Q ss_pred CCCCCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 254 KAPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 254 ~~~~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
...-+|+.-.||+|..--.+|.++ .+|..||..||-.++. .+.+||+|+.+..
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 334557778999999999999876 5699999999999999 7789999988764
No 169
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.97 E-value=0.014 Score=43.71 Aligned_cols=55 Identities=29% Similarity=0.303 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 574 PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 574 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
|.+|..|+++|.+++...+..... ....+++.|..++.+.++.++..|.++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998887766555 4456899999999999999999999999865
No 170
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.89 E-value=0.038 Score=60.12 Aligned_cols=219 Identities=12% Similarity=0.141 Sum_probs=131.9
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch---hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhh-
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK---GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV- 472 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k---~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~- 472 (661)
.|..++.+|++..+.++.+|+.....|+.--.++ ..+...|. .|.+-|....+|+.-..+.++..+......+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 4566677889999999999988888876432211 11222332 24555656678888877777777755544322
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
+=-.+|.+|.|..+|++....+..+.+..+..++.+.+...-..+ ..+--.|+++|.+.+.+++..|...++.++..-.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 222358999999999999999999999999999887654321111 1133357888888889999999988887664211
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHH---HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNREN---AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~---A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
-..++..|+.-|+..+...|.. |..++...|.- -.++|.|+.=-..+...++.....++..
T Consensus 763 ------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 763 ------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred ------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 1123344444444333322222 22222222221 1245555554455556666666666665
Q ss_pred HHhhH
Q 006099 629 MSRFI 633 (661)
Q Consensus 629 L~~~~ 633 (661)
+-++-
T Consensus 827 mFeyi 831 (975)
T COG5181 827 MFEYI 831 (975)
T ss_pred HHHHH
Confidence 55443
No 171
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.87 E-value=0.29 Score=47.83 Aligned_cols=140 Identities=17% Similarity=0.146 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-----CCccHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHH
Q 006099 494 GKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEG--KAAIGAAEAVPVLV 566 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~--~~~i~~~g~i~~Lv 566 (661)
-..+|+..|..++.+++.+..++++.+.--|..+|.. +...++-.++++++.|..+++. -..+..+++||..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3467888899999999999999998887777887754 3456788899999999876643 34556789999999
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhcCCHH--H-HHH-----HHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 567 EVIGNGSPRNRENAAAVLVHLCAGDQQ--Y-LAE-----AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 567 ~lL~~~~~~~ke~A~~~L~~L~~~~~~--~-~~~-----~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
+.+..|+...|.-|..++..+...+.. + |+. .+..-.-..+..+...++.++-+.+.++.-.|++..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999888765531 1 111 011111223345556778898888888888887643
No 172
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.16 Score=57.29 Aligned_cols=217 Identities=14% Similarity=0.108 Sum_probs=150.1
Q ss_pred CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHH-HcccCCchhhhhhhcCCcHHHHHhhhcCC-HHHHHHHHHHHH
Q 006099 426 CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLF-SLSVIDENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALF 503 (661)
Q Consensus 426 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~ 503 (661)
...-+...+..|+...++++...+.++.+-....+|. .++...+ .....++++.+.+.... .-....++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3344667779999999999999988888888877777 3322211 01255666666665433 122356888999
Q ss_pred HhhcccC-chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHH-HHh-CCChHHHHHHhhCCCHHHHHHH
Q 006099 504 NLCIYQG-NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAA-IGA-AEAVPVLVEVIGNGSPRNRENA 580 (661)
Q Consensus 504 nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~-i~~-~g~i~~Lv~lL~~~~~~~ke~A 580 (661)
||+...+ .|..+++.-.++.+-.++...++..+..++..+.||..++..-.. +++ ...++.....+..-.......+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9987655 466788777777777777788899999999999999998866543 444 3467777777765445556666
Q ss_pred HHHHHHHhcCCHHHHHH-HHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHH
Q 006099 581 AAVLVHLCAGDQQYLAE-AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 647 (661)
Q Consensus 581 ~~~L~~L~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~ 647 (661)
+.++..|......+|.. .--......+..++.++++.++........++.....+.-..+...+.+.
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~ 715 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME 715 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH
Confidence 66666676666556653 33345778888999999999999888877777666655544444444443
No 173
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.84 E-value=0.0033 Score=64.72 Aligned_cols=35 Identities=17% Similarity=0.621 Sum_probs=31.4
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~ 293 (661)
.++++||||...+++|+|++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46899999999999999999999999999876554
No 174
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.24 Score=56.62 Aligned_cols=168 Identities=22% Similarity=0.177 Sum_probs=121.8
Q ss_pred HccCCHHHHHHHHHH-HHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHH
Q 006099 363 LTSGSPEDQRSAAGE-IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPS 441 (661)
Q Consensus 363 L~s~~~~~~~~Al~~-L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~ 441 (661)
+.+++...+..|.+. |..++.+++ - .-..|-+++...+.|.++++-.-.=|.+.++..+....+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 666777778888764 444554332 1 123466777777788888877666666666654432222 4556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCCh
Q 006099 442 IVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVV 521 (661)
Q Consensus 442 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v 521 (661)
+.+=+.+.++.+|..|++++..|-. .-....+++++.+++.++++.+++.|+-++.++-..+ +....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHH
Confidence 6666778899999999999988732 1122357899999999999999999999999987544 3344577888
Q ss_pred HHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 522 PTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 522 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
..+..++.+.++.+...|+..|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999999999987754
No 175
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.64 E-value=0.014 Score=59.15 Aligned_cols=54 Identities=17% Similarity=0.446 Sum_probs=42.5
Q ss_pred CCCCccCcCCcccccC--C-e-ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc
Q 006099 258 IPDDFRCPISLELMKD--P-V-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~d--P-v-~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~ 313 (661)
-...|.|||++..|.. + | +.+|||.|+..+|.+.- ....||.|+.++...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3567999999999953 2 2 34999999999999873 3567999999998776543
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.63 E-value=0.049 Score=47.47 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=61.4
Q ss_pred hhHHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhc
Q 006099 353 RTKIEILLCKL-TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL 423 (661)
Q Consensus 353 ~~~i~~Lv~~L-~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nL 423 (661)
-..+..|++.| .+.|+....-|+..|+.+++..|..|..+-+.|+-..++.++.++|++++.+|+.++-.+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46889999999 456777888899999999999999999998999999999999999999999999988655
No 177
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.28 Score=55.31 Aligned_cols=231 Identities=16% Similarity=0.120 Sum_probs=138.1
Q ss_pred cchhhhhhHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH
Q 006099 313 PNYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAI 392 (661)
Q Consensus 313 ~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i 392 (661)
.|..++.++-.|.......-|.- ..+.+..++....+.+|.++.-|++.+..+-- +.-.
T Consensus 61 ~dlelKKlvyLYl~nYa~~~P~~----------------a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~--- 119 (734)
T KOG1061|consen 61 RDLELKKLVYLYLMNYAKGKPDL----------------AILAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKIT--- 119 (734)
T ss_pred CCchHHHHHHHHHHHhhccCchH----------------HHhhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHH---
Confidence 34566777777765543322222 24667778888888999999888877766532 1111
Q ss_pred HHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch-h
Q 006099 393 AEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-K 471 (661)
Q Consensus 393 ~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~-~ 471 (661)
.-...+|.+.++++++-+|..|.....++- ..+.......|.++.|-.++.+.++.+..+|.++|..+...+.+ .
T Consensus 120 --ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 120 --EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred --HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 124678999999999999998877776663 33456667899999999999988999999999999999876643 1
Q ss_pred hhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 472 VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
........+..++..+...+.-.+. .+|-+++.+..... .=...++..+...|.+.+..++-.++.++..+...-.
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 1111223334444444433333333 33444444333222 0111244456666666666666666666665554433
Q ss_pred hHHHHHhCCChHHHHHHhhCC
Q 006099 552 GKAAIGAAEAVPVLVEVIGNG 572 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~ 572 (661)
......-...-+.|+.++.+.
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~ 292 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSE 292 (734)
T ss_pred HHHHHHHHHhcccceeeeccc
Confidence 322222223444555555433
No 178
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1 Score=51.00 Aligned_cols=255 Identities=14% Similarity=0.096 Sum_probs=165.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..-..|.++|.+.....+..|.+-|-.+...+.+. ..+.|..++...+.|.++++-.---|..-+....+-..+
T Consensus 35 ~~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 35 IRHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred CChHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 34567899999988888999988665554334332 234688899999999999887766666666554333322
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-h
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-K 512 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~ 512 (661)
-|..+-+-|++.++.+|..|+++|..+-. -+...=.+-.+-+...+.++.+++.|+.||-.|=.-+.+ +
T Consensus 109 ----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 ----SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred ----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 45667778889999999999999887732 222221222333344556789999999999888654443 4
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD- 591 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~- 591 (661)
.+++ ..+=.+|.+.++.+.-.|+.+...+|-+ .-..|. +-...|..+|..-+.+.|-.....|..-|.+.
T Consensus 179 ~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 179 DQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred HHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcC
Confidence 4333 3455567788899999999988887743 222232 34677888888777788888887777766431
Q ss_pred --HHHH----------------------HHHHHcC---CHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 592 --QQYL----------------------AEAKELG---VMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 592 --~~~~----------------------~~~~~~g---~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
|... ....+.+ .++..--++.+.++.+...++.+.++++...
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 1000 0000111 1333344566667777777777887777654
No 179
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.22 E-value=2.2 Score=49.82 Aligned_cols=239 Identities=16% Similarity=0.116 Sum_probs=142.2
Q ss_pred HHHHhCCHHHHHHhhCC-----CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHc----cCC----HHHHHHH
Q 006099 391 AIAEAGAIPLLVGLLST-----PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR----IGS----MEARENA 457 (661)
Q Consensus 391 ~i~~~g~i~~Lv~lL~s-----~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~e~~~~a 457 (661)
.+.+.|++..|+.+|.+ .+.......+.+|...++-..||..+.+.|+++.|++.|. .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45567899999999876 2345555666766667778899999999999999999885 222 4556665
Q ss_pred HHHHHHcccCCc---hhhhhh----------hcCCcHHHHHhhhcC----CHHHHHHHHHHHHHhhcccCchHHHHHcCC
Q 006099 458 AATLFSLSVIDE---NKVTIG----------ASGAIPPLVTLLSEG----TQRGKKDAATALFNLCIYQGNKGKAVRAGV 520 (661)
Q Consensus 458 ~~~L~~Ls~~~~---~~~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~ 520 (661)
..++..|...-. ...... ....+..|++.+.+. ++.+....+++|-+|+.....+...+-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 555555432211 111100 112366677776654 5788888999999999988776543321 1
Q ss_pred hHHHHhc--ccCCCccHHHHHHHHHHHhcC----Ch---hhHHHHHhCCChHHHHHHhhCC--------CHHHH------
Q 006099 521 VPTLMHL--LTEPGGGMVDEALAILAILSS----HP---EGKAAIGAAEAVPVLVEVIGNG--------SPRNR------ 577 (661)
Q Consensus 521 v~~Lv~l--L~~~~~~~~~~al~~L~~L~~----~~---~~~~~i~~~g~i~~Lv~lL~~~--------~~~~k------ 577 (661)
+.+.+++ +......--...+.++..++. +. .-|..+++.|++...+..|... +++-+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 2222222 111101101122444444432 22 4468889999999888888642 23333
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006099 578 --ENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSR 631 (661)
Q Consensus 578 --e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~ 631 (661)
..++.+|.-||.+..... .++..++++.|..+-+.. +.++-.-|-.+|..|++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 356777788888765433 445666776666554432 44455555556655554
No 180
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.016 Score=55.61 Aligned_cols=53 Identities=17% Similarity=0.488 Sum_probs=45.6
Q ss_pred CCccCcCCcccccCCe----ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc
Q 006099 260 DDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv----~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~ 313 (661)
..|.||+|.+.+.+.+ .-+|||.+|..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 5699999999998753 348999999999999887 7789999999998887765
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.16 E-value=0.75 Score=47.88 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc--c-CchHHH
Q 006099 441 SIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIY--Q-GNKGKA 515 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~-~~~~~i 515 (661)
..+..+...+...|+.+...+..+.........+... ..+..+.+.++.|..+-+..|+.++.-|+.. . +....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 3444445556788888888888776554433444332 5677888888888776667788877777766 2 233333
Q ss_pred HHcCChHHHHhcccCCCc--cHHHHHHHHHHHhcC---Ch-hhHHHHHhCCChHHHHH--HhhC-C---------CHHHH
Q 006099 516 VRAGVVPTLMHLLTEPGG--GMVDEALAILAILSS---HP-EGKAAIGAAEAVPVLVE--VIGN-G---------SPRNR 577 (661)
Q Consensus 516 v~~g~v~~Lv~lL~~~~~--~~~~~al~~L~~L~~---~~-~~~~~i~~~g~i~~Lv~--lL~~-~---------~~~~k 577 (661)
. ....|.|.+.+.+... .++..|+.+|+.++. .+ +......+ .+..+.. .++. + ++.+.
T Consensus 127 ~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 F-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred H-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 3 3678888888877443 344455556664433 22 22221111 2221111 1221 1 23455
Q ss_pred HHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHH
Q 006099 578 ENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 578 e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~ 634 (661)
-.|+..-.-|...-+. ...... ...++.|..++.+.+..+|..|.+.|..|.+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5555443333333232 233222 3468999999999999999999999998876553
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.09 E-value=0.24 Score=51.89 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=144.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHh--CCHHHHHHhhCCCChHHHHHHHHHHHhccCC
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV-----AIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSIC 426 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~ 426 (661)
+.+..|+..|..-+.+.+..+.....++.+.....+. .+... ..+..|+..-. ++++--.+...|.....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhh
Confidence 6788899999999999999999999988776555543 33322 23444444444 455556777888888888
Q ss_pred CcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-h-hhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHH
Q 006099 427 EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-N-KVTIGAS--GAIPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 427 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~-~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
+.....|.....+..+......++-++...|..++..|-..+. . ...+... .++...-.+|.+++.-++..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 7777778888899999999999999999999999988655443 2 2333333 6778889999999999999999999
Q ss_pred HHhhcccCchHHHH----HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 503 FNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 503 ~nL~~~~~~~~~iv----~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
..|..+..|...|. +..-+..++.+|++.+..++-.|..++.-...+|.
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999876544 34577888999999999999999999987777663
No 183
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.00 E-value=0.99 Score=44.96 Aligned_cols=181 Identities=18% Similarity=0.145 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHcccC-Cchhhhhhhc-CCcHHHHHhhhc-------C--CH---HHHHHHHHHHHHhhcccCchHHH
Q 006099 450 SMEARENAAATLFSLSVI-DENKVTIGAS-GAIPPLVTLLSE-------G--TQ---RGKKDAATALFNLCIYQGNKGKA 515 (661)
Q Consensus 450 ~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~-------~--~~---~~~~~a~~aL~nL~~~~~~~~~i 515 (661)
+++.|+.|..-|+.--.. ++-...+-.+ |.+..|++=+-+ . +. .-..+|+..|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567788777766654333 2333334444 877777665532 1 12 22356777788899999999999
Q ss_pred HHcCChHHHHhcccCCC-----ccHHHHHHHHHHHhcCCh--hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 516 VRAGVVPTLMHLLTEPG-----GGMVDEALAILAILSSHP--EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 516 v~~g~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
+++.+.--|..+|...+ ..++-.++++++.|...+ +.-..+..++.+|..++.+..|+...|.-|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999888888886532 356677899999998854 44466678899999999999999999999999998876
Q ss_pred cCCHHHHHHHHH--------cCCHHHHH-HhhhcCChHHHHHHHHHHHHHHh
Q 006099 589 AGDQQYLAEAKE--------LGVMGPLV-DLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 589 ~~~~~~~~~~~~--------~g~i~~L~-~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
..+. ....+.+ ..++..++ .+...++++.-+....+-..|++
T Consensus 168 ~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 168 LDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred cchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 5433 1111110 11233333 33345566665555555555554
No 184
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.86 E-value=0.088 Score=50.50 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHhccCCCcchhHhhh----------------CCChHHHHHHHccC------CHHHHHHHHHHHHHccc
Q 006099 409 DSRTQEHAVTALLNLSICEDNKGSIVS----------------SGAVPSIVHVLRIG------SMEARENAAATLFSLSV 466 (661)
Q Consensus 409 ~~~i~~~A~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~e~~~~a~~~L~~Ls~ 466 (661)
+...-..++.+|.||+..+.....+.. ..++..|+..+..| ...-....+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334455678888888887666554431 23667777777552 23456788999999999
Q ss_pred CCchhhhhhhc--CC--cHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH
Q 006099 467 IDENKVTIGAS--GA--IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR 517 (661)
Q Consensus 467 ~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~ 517 (661)
.+++|..+... +. +..|+.++.+.+..-+.-++.+|.|+|...+....+..
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence 99999999876 44 77788888777777778899999999999998887775
No 185
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.79 E-value=0.97 Score=45.03 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHhhcccCchHHHH--HcCChHHHHhcccC-------CC--c---cHHHHHHHHHHHhcCChhhHHHH
Q 006099 491 TQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTE-------PG--G---GMVDEALAILAILSSHPEGKAAI 556 (661)
Q Consensus 491 ~~~~~~~a~~aL~nL~~~~~~~~~iv--~~g~v~~Lv~lL~~-------~~--~---~~~~~al~~L~~L~~~~~~~~~i 556 (661)
+++.++.|+.-|..--..-++-.-++ .-|.+..|++=+-+ +. . .-+-.|+++|..++++|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45566666555443333323333333 45777766543322 21 1 23456788888999999999999
Q ss_pred HhCCChHHHHHHhhCCC-----HHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 557 GAAEAVPVLVEVIGNGS-----PRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 557 ~~~g~i~~Lv~lL~~~~-----~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+++...-.|..+|+..+ ...|-.+.++++.|...++ +....+.+..++|..+..+..|+.-.|-.|..++.-+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99998888888897643 3457788999999987554 66778888999999999999999999999999998776
Q ss_pred hhH
Q 006099 631 RFI 633 (661)
Q Consensus 631 ~~~ 633 (661)
..+
T Consensus 168 ~dd 170 (262)
T PF04078_consen 168 LDD 170 (262)
T ss_dssp HSH
T ss_pred cch
Confidence 544
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.79 E-value=1.4 Score=52.27 Aligned_cols=266 Identities=16% Similarity=0.176 Sum_probs=147.6
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC---C-Ccchh
Q 006099 357 EILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI---C-EDNKG 431 (661)
Q Consensus 357 ~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~---~-~~~k~ 431 (661)
..+...+.+ ...+.+.+|+.-|..++.-... ...-..++|.++.++.++...+|..|+.+|..+.. + +..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334344433 2456788999999988753211 11223478999999999999999999998887643 2 23334
Q ss_pred HhhhCCChHHHHHHHccCC-HHHHHHHHHHHHHccc------------------CCchhhhhhhc----------CCc-H
Q 006099 432 SIVSSGAVPSIVHVLRIGS-MEARENAAATLFSLSV------------------IDENKVTIGAS----------GAI-P 481 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~------------------~~~~~~~i~~~----------g~i-~ 481 (661)
.|.-.-.+|.|-+++.+.+ .-+|..-|..|..|+. ++.+-....+. ..+ .
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence 4556667888888887743 3344333333333321 11111011100 111 2
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 006099 482 PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA 561 (661)
Q Consensus 482 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 561 (661)
..+.+|.+.++-+++.-+..|.-||..-.... ...=+++.|+.+|.+.+..++-.-..-|.-+|..-.- .-++.+.
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyl 657 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYL 657 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHH
Confidence 22333333444555555556666664322110 0112456677777766554443333333322221111 1124456
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 562 VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 562 i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
+|.|..-|.++.+.+-..|+.+|.-||..+-=....+. .+++...-++-+++..+|+.++..+....+
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 78888888888888888888888888875431122222 245556667778888888888887766543
No 187
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.016 Score=61.11 Aligned_cols=51 Identities=16% Similarity=0.500 Sum_probs=38.6
Q ss_pred CCCCccCcCCccccc-----------------CCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMK-----------------DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~-----------------dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
....--|+||+.... +=..+||.|.|.+.|+++|.+...-.||.||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 344456999986431 112359999999999999999666689999998863
No 188
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.021 Score=59.21 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=37.9
Q ss_pred CccCcCCcccccC---CeecCCCccccHHHHHHHHHhCC--CCCCCCCC
Q 006099 261 DFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGH--RTCPKTQQ 304 (661)
Q Consensus 261 ~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~--~~cP~~~~ 304 (661)
-|.|||..+--.| |+.+.|||..++..+.+..+.|. +.||.|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4899999987653 77899999999999999998777 88999944
No 189
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=1.8 Score=48.48 Aligned_cols=256 Identities=14% Similarity=0.100 Sum_probs=146.8
Q ss_pred HHHccCC--HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC--CcchhHhhhC
Q 006099 361 CKLTSGS--PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC--EDNKGSIVSS 436 (661)
Q Consensus 361 ~~L~s~~--~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~--~~~k~~i~~~ 436 (661)
+.|-+++ .-++.+|+-+|-.|.+.+++ .+-..+.+..++.+|.+.+..+...+...+--|++. +..+..+.
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-- 227 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-- 227 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--
Confidence 4444433 23555555565555554444 233345678899999887766666666666666654 22233321
Q ss_pred CChHHHHHHHcc-------------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC----CH---HHHH
Q 006099 437 GAVPSIVHVLRI-------------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG----TQ---RGKK 496 (661)
Q Consensus 437 g~i~~Lv~lL~~-------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~~---~~~~ 496 (661)
-++..|...... +.+=++...+++|.++-..++.-.+..-..++..++...+.. +. ..+-
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 112222222211 123356677777777743333222222223344444444321 11 1111
Q ss_pred HHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh-CCCHH
Q 006099 497 DAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPR 575 (661)
Q Consensus 497 ~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~ 575 (661)
..+.-.-+|+.+-+....++. .++..|-++|.+....++--|+..+..|+.......++... ...++..|+ ..+-.
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 222223345554444333332 36778888998888999999999999999886655555544 777888888 56788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 576 NRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 576 ~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
+|..|+..|..+|-.+ ++..+ +.-|+..+.+.+..+|+....=...|++
T Consensus 385 irrravDLLY~mcD~~--Nak~I-----V~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVS--NAKQI-----VAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHHHHhchh--hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 8999999999999754 44443 3456667777777777665555555544
No 190
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.0087 Score=58.21 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=41.7
Q ss_pred CCccCcCCcccccCC----------eecCCCccccHHHHHHHHHhCC-CCCCCCCCCCcCCCCcc
Q 006099 260 DDFRCPISLELMKDP----------VIVSTGQTYERSCIEKWLEAGH-RTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 260 ~~f~CpIc~~~m~dP----------v~~~cg~t~~r~~I~~w~~~~~-~~cP~~~~~l~~~~l~~ 313 (661)
++-.|.+|.+-+.+- ..++|+|.|.--||..|.--|. .+||.|+++.....+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence 456799998766543 3689999999999999998554 79999988776544443
No 191
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.30 E-value=0.2 Score=42.40 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=54.4
Q ss_pred CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 560 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 560 g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
..++.++..+.+.++++|..|+.+|.+++......... .-..+...|..++.+.++++|..|..+-+.|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 36889999999999999999999999998754322211 22357888999999999999988876666553
No 192
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.22 E-value=0.8 Score=49.70 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=116.4
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCH----HHHHHHHHHHHHhhcccCchH
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ----RGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~nL~~~~~~~~ 513 (661)
....+.+++.+++...+..+...|..|+.+......+....++..|..++.+++. ......+.++..|..+.-.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456788888998888888999999999998888888899999999999998854 455566666666654332222
Q ss_pred HHHHcCChHHHHhccc--CCCccHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 514 KAVRAGVVPTLMHLLT--EPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
..+...+|.....+.. ..+..+...|+..|.++..... .+..+.+.--+..|+..++.++...+..|.+.+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 2223333333333332 2456777889999998887765 556666777899999999988888888888888887654
Q ss_pred CH-HHHHHHH
Q 006099 591 DQ-QYLAEAK 599 (661)
Q Consensus 591 ~~-~~~~~~~ 599 (661)
.+ ..+..+.
T Consensus 244 a~~~~R~~~~ 253 (713)
T KOG2999|consen 244 APDDKRFEMA 253 (713)
T ss_pred CChHHHHHHH
Confidence 44 3333333
No 193
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.012 Score=42.43 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=37.6
Q ss_pred cCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 263 RCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.|.||.+--.|.|+-.|||. .|..|-.+.+..++..||.||.++.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 49999998889888899994 6788877777768889999998653
No 194
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=94.11 E-value=0.037 Score=54.03 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=38.1
Q ss_pred CccCcCCcccccCCee-cCCCccccHHHHHHHHHh-CCCCCCCCCCC
Q 006099 261 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEA-GHRTCPKTQQT 305 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~-~~~~cP~~~~~ 305 (661)
+++|||+.....+|++ ..|||.|+|..|...+.. ....||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 4799999999999998 589999999999999872 24579987765
No 195
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.10 E-value=4.4 Score=40.36 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=117.1
Q ss_pred hCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh-
Q 006099 395 AGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK- 471 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~- 471 (661)
..++|.|+..|... .+-+|..|..+|+++. + .+.++.+-+..+....++++.+..++..+-..+...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 45789999988765 4667778889987765 2 333444555554445566665555555542211100
Q ss_pred -----hhh-------hhcCCcHHHHHhhhcCCHHH--HHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHH
Q 006099 472 -----VTI-------GASGAIPPLVTLLSEGTQRG--KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 537 (661)
Q Consensus 472 -----~~i-------~~~g~i~~Lv~lL~~~~~~~--~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~ 537 (661)
..+ ...+-+..|-..|.+.+... +..|...|.|+-. ..+|..|++-|..++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 000 01122344444443333221 2233333333321 12445566666666677778
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC
Q 006099 538 EALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT 615 (661)
Q Consensus 538 ~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 615 (661)
.+..+++.|-+ .-.+|.|.+.|.+ ..|.+|..|+.+|..++... .++.|.+++....
T Consensus 206 EvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcH
Confidence 88888876643 2468889888864 45889999999999987642 5667778888888
Q ss_pred hHHHHHHHHHHHHHH
Q 006099 616 DRGKRKAAQLLERMS 630 (661)
Q Consensus 616 ~~~k~~A~~lL~~L~ 630 (661)
+-+++.+..+|..+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777653
No 196
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.033 Score=53.53 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~ 293 (661)
.+.+.-+|.+|++..+|||+.+.||.|||.||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3444557899999999999999999999999999986
No 197
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.05 E-value=0.061 Score=39.13 Aligned_cols=41 Identities=24% Similarity=0.676 Sum_probs=31.5
Q ss_pred cCcCCcc--cccCCeecCCC-----ccccHHHHHHHHHh-CCCCCCCCC
Q 006099 263 RCPISLE--LMKDPVIVSTG-----QTYERSCIEKWLEA-GHRTCPKTQ 303 (661)
Q Consensus 263 ~CpIc~~--~m~dPv~~~cg-----~t~~r~~I~~w~~~-~~~~cP~~~ 303 (661)
.|.||++ .-.+|.+.||. +.+-+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 34577778874 66899999999984 456899884
No 198
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.99 E-value=1.5 Score=41.59 Aligned_cols=92 Identities=21% Similarity=0.153 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCC-hHHHHHH
Q 006099 367 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGA-VPSIVHV 445 (661)
Q Consensus 367 ~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~-i~~Lv~l 445 (661)
++.++..++..+..|+...+..- ...+|.+...|+++++.+|+.|+.+|..|...+- +--.|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence 46788899999999987554422 2458999999999999999999999999875422 222233 4788888
Q ss_pred HccCCHHHHHHHHHHHHHcccC
Q 006099 446 LRIGSMEARENAAATLFSLSVI 467 (661)
Q Consensus 446 L~~~~~e~~~~a~~~L~~Ls~~ 467 (661)
+.+.+++++..|...+..++..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8888999999999999998765
No 199
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.037 Score=57.49 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=40.7
Q ss_pred CCCCccCcCCcccccCCe-----e---cCCCccccHHHHHHHHHhC------CCCCCCCCCCCc
Q 006099 258 IPDDFRCPISLELMKDPV-----I---VSTGQTYERSCIEKWLEAG------HRTCPKTQQTLT 307 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv-----~---~~cg~t~~r~~I~~w~~~~------~~~cP~~~~~l~ 307 (661)
.-.+..|-||++...+++ . .+|.|+||-.||.+|-... .+.||.||.+..
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356789999999888877 3 4699999999999999532 378999987654
No 200
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.029 Score=57.95 Aligned_cols=59 Identities=32% Similarity=0.671 Sum_probs=46.8
Q ss_pred ccCcCCcccccCC-----eecCCCccccHHHHHHHHHh-CCCCCCCCCCCCcCCCCccchhhhhh
Q 006099 262 FRCPISLELMKDP-----VIVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLTSTAVTPNYVLRSL 320 (661)
Q Consensus 262 f~CpIc~~~m~dP-----v~~~cg~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~l~~n~~l~~~ 320 (661)
-.||||++-+.-| |++.|||-|-..||++|+.+ ....||.|..+-....+.+-+.+|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 5799999977765 35789999999999999963 23579999887777777777776654
No 201
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.90 E-value=0.31 Score=46.60 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=63.2
Q ss_pred HHHHHcCChHHHHhcccC---------CCccHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHHhhCCCHHHHHHHHH
Q 006099 513 GKAVRAGVVPTLMHLLTE---------PGGGMVDEALAILAILSSHPEGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAA 582 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~ke~A~~ 582 (661)
..+++.||+..|+.+|.. .+......++.+|..+..+..|...++.. +++..|+..|.+.++.++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 367788999999988865 12357788999999999999999888875 78999999999999999999999
Q ss_pred HHHHHhc
Q 006099 583 VLVHLCA 589 (661)
Q Consensus 583 ~L~~L~~ 589 (661)
+|..+|.
T Consensus 181 iL~~lc~ 187 (187)
T PF06371_consen 181 ILAALCL 187 (187)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9999983
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.89 E-value=1.1 Score=48.57 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=125.7
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCc----cHHHHHHHHHHHhcCChhhH
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGG----GMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~~~~~~ 553 (661)
.....+.+++.+++...+..|...|..++....-...++...++..|..++.+++. .+...++.++..+-.+.-..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567788899999999988999999999998888899999999999999987543 45555666665554433211
Q ss_pred HHHHhCCChHHHHHHhhC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 554 AAIGAAEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 554 ~~i~~~g~i~~Lv~lL~~--~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
=..+...+|.....+..- -...+-..|+.+|-++..+++.....+.+.--+..|+..++.++.++...|..+|..+-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111122234444444421 234456788899999999888788888888889999999999999999999999887654
Q ss_pred -hHHHHHHHHhhhhhHHHhhhh
Q 006099 632 -FIEQQKQAQVQTESQSQIQEA 652 (661)
Q Consensus 632 -~~~~~~~~l~~~~~~~~l~~~ 652 (661)
..+..+..++..-.+.++..|
T Consensus 243 ~a~~~~R~~~~~~l~~~~~R~a 264 (713)
T KOG2999|consen 243 KAPDDKRFEMAKSLEQKQFRNA 264 (713)
T ss_pred hCChHHHHHHHHHHHHHHHHHH
Confidence 335566666666555555444
No 203
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.66 E-value=2.3 Score=44.32 Aligned_cols=190 Identities=17% Similarity=0.126 Sum_probs=112.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH--hCCHHHHHHhhCCCChHHHHHHHHHHHhccCC---Ccc
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE--AGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC---EDN 429 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~---~~~ 429 (661)
.+...+..+.......+..++..|..+....... ..+.. ...++.+.+.++.+..+-+..|+.++.-++.. ...
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 3666777777778889999999998877543322 23322 24678888888887776677777777777654 123
Q ss_pred hhHhhhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCc-hhhhhhhc-CCcH--HHHHhhhcC----------CHH
Q 006099 430 KGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDE-NKVTIGAS-GAIP--PLVTLLSEG----------TQR 493 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~-g~i~--~Lv~lL~~~----------~~~ 493 (661)
...+. ....+.|..++..+ +..+|..++.+|.-++.... ....+... ..+. +....++.+ ++.
T Consensus 123 ~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 123 SEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 33333 34677788888766 35666677766666554321 11111100 2222 111112211 234
Q ss_pred HHHHHHHHHHHhhcccCc-hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh
Q 006099 494 GKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~-~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L 546 (661)
+...|+.+-.-|...-+. +..-.-...++.|+.+|.+++.+++..|-.+|+-|
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 556666555555433332 22222245789999999999999998887777655
No 204
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=2.9 Score=47.53 Aligned_cols=260 Identities=19% Similarity=0.182 Sum_probs=145.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Cc----
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-ED---- 428 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~---- 428 (661)
...+++=..|.+...-+..+|+..+..+...++. .+. .++..|--++++....+|-.|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 4556676777777888899999999888643322 121 2677788889999999999999999988752 21
Q ss_pred -chh--Hhh-h---CCChHHHHHHHccCCHHHHHHHHHHHHHcccC--Cchhhhhhh-------------cCCcHHHHHh
Q 006099 429 -NKG--SIV-S---SGAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGA-------------SGAIPPLVTL 486 (661)
Q Consensus 429 -~k~--~i~-~---~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~-------------~g~i~~Lv~l 486 (661)
|++ .++ . .-+-..+..+|+.|+.+....-..-+.++..+ ++++..+++ .+.+..|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 111 111 1 12445567778877655444333333333221 344432221 1344555555
Q ss_pred hhc-CCHHHHHHHHHHHHHhhc-ccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 006099 487 LSE-GTQRGKKDAATALFNLCI-YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPV 564 (661)
Q Consensus 487 L~~-~~~~~~~~a~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~ 564 (661)
|++ |.-+-+.....++..+.. +++.|.. ++..|..++.+ -+...-+..+|..|...... ...-...+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~EgP~--a~~Pskyir~ 470 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEGPK--APNPSKYIRF 470 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccCCC--CCCcchhhHH
Confidence 543 223444444444444433 3333322 22334444432 22233444455444332110 0001123444
Q ss_pred HHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 565 LVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 565 Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
+...+.-.+..+|-.|+.+|..+..+.+. ....+...|...+.+.++.+++.|...|.++...
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 55544445778889999999998854431 1223455566677788999999999999999843
No 205
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.44 E-value=1.8 Score=49.25 Aligned_cols=237 Identities=17% Similarity=0.116 Sum_probs=149.5
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHH-hccCCCcchhHhhhCCChHHHHHHHccCC-HHHHHHHHHHHH
Q 006099 385 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALL-NLSICEDNKGSIVSSGAVPSIVHVLRIGS-MEARENAAATLF 462 (661)
Q Consensus 385 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~ 462 (661)
...-+...+..|+...|+++..-..+.....+..+|. .++.. ..+ ....++++...+++.. .--.-.++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4445566777889999999888777777777777776 22211 111 1223444444443321 112235678888
Q ss_pred HcccCCc-hhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH-H-cCChHHHHhcccCCCccHHHHH
Q 006099 463 SLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-R-AGVVPTLMHLLTEPGGGMVDEA 539 (661)
Q Consensus 463 ~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv-~-~g~v~~Lv~lL~~~~~~~~~~a 539 (661)
||+..++ .|..|...-+++.+-.++...++..+..++..+.||..++---.+.+ + ...++.....+........-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 8988764 57778888777777777888889999999999999998876544433 3 3344555444544333344444
Q ss_pred HHHHHHhcCChhhH-HHHH-hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChH
Q 006099 540 LAILAILSSHPEGK-AAIG-AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 617 (661)
Q Consensus 540 l~~L~~L~~~~~~~-~~i~-~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 617 (661)
..++..++...++. ..+. .......++.++.+.++.++...+.+.+++.....+....+.....++.+..+-...-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 55555344433322 2132 235778888899999999999999888887776667777777777777666554443333
Q ss_pred HHHHHHHHH
Q 006099 618 GKRKAAQLL 626 (661)
Q Consensus 618 ~k~~A~~lL 626 (661)
.++.+...|
T Consensus 728 ~~~~~~~~l 736 (748)
T KOG4151|consen 728 KREDAAPCL 736 (748)
T ss_pred hhhhhhhHH
Confidence 444444443
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.40 E-value=0.75 Score=54.32 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=137.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHh---hChhhHHHHHHhCCHHHHHHhhCCCCh-HHHHHHHHHHHhccC----
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAK---RNADNRVAIAEAGAIPLLVGLLSTPDS-RTQEHAVTALLNLSI---- 425 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~s~~~-~i~~~A~~~L~nLs~---- 425 (661)
-.++.++..+.+...++|..|+..|..+.. .-+..-..|.-.=..|.|-.++.+.+. .++..-+..|..||.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 467899999999999999999998877532 222222233333356777777776332 223222223332221
Q ss_pred --------------CC-cchhHhh----------hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhh-cCC
Q 006099 426 --------------CE-DNKGSIV----------SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA-SGA 479 (661)
Q Consensus 426 --------------~~-~~k~~i~----------~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~-~g~ 479 (661)
++ .+..... ..++=..+..+|....+-++..-+..|.-||..- .+... .=.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF---Gk~ksND~i 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF---GKEKSNDVI 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh---hhcccccch
Confidence 11 1101110 0111122333444444455555445555554320 01111 135
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhC
Q 006099 480 IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA 559 (661)
Q Consensus 480 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~ 559 (661)
++.|+..|++.+...+-.-...|..++..-+.+ -++.+++|.|.+-|.++.+.+...|+.+|..|+...-.++..+-
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~- 695 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK- 695 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-
Confidence 678888888887777665555666666554433 25677889999999999999999999999999987654433221
Q ss_pred CChHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 560 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 560 g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
..+.....+|-.++..+|..++.++..+...
T Consensus 696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 696 DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2455566677788999999999999887654
No 207
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.22 E-value=0.037 Score=56.80 Aligned_cols=48 Identities=29% Similarity=0.510 Sum_probs=40.5
Q ss_pred cCcCCcccccCCeecCCCccccHHHHHHHHHh-CCCCCCCCCCCCcCCC
Q 006099 263 RCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLTSTA 310 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~ 310 (661)
.|.||-+-=+|--|-+|||-.|-.|+..|-.+ ++.+||.||..+..++
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 48899988888777899999999999999964 4789999998876443
No 208
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.15 E-value=0.99 Score=46.82 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=111.8
Q ss_pred CCHHHHH-HhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhh
Q 006099 396 GAIPLLV-GLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKV 472 (661)
Q Consensus 396 g~i~~Lv-~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~ 472 (661)
+.+..|+ ..+++.+..+|+.|+.+|+-.+.-+.. + ....++.+...+..++.+++..|+.+++.+..... .-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 577889999999999999998765431 1 12346778888877889999999999998865432 111
Q ss_pred h-------hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCC---CccHHHHHHH-
Q 006099 473 T-------IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP---GGGMVDEALA- 541 (661)
Q Consensus 473 ~-------i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~~~al~- 541 (661)
. ......+..+.+.+.+.+++++..|+..++.|...+-... ...++..|+-+..++ +..-...++.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1 2223677888888888899999999999999877654332 123444454444332 2223344444
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHhhC
Q 006099 542 ILAILSSHPEGKAAIGAAEAVPVLVEVIGN 571 (661)
Q Consensus 542 ~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 571 (661)
++-..+......+..+....+|.+-.+.+.
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 444667666555566666678888777764
No 209
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.09 E-value=0.033 Score=43.99 Aligned_cols=47 Identities=23% Similarity=0.650 Sum_probs=23.0
Q ss_pred CccCcCCccccc-C---Ceec----CCCccccHHHHHHHHHh--CC--------CCCCCCCCCCc
Q 006099 261 DFRCPISLELMK-D---PVIV----STGQTYERSCIEKWLEA--GH--------RTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~-d---Pv~~----~cg~t~~r~~I~~w~~~--~~--------~~cP~~~~~l~ 307 (661)
+..|+||..... + |+.+ .|+++|-..|+.+||.. +. .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 4432 58899999999999983 11 24999988765
No 210
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.78 E-value=3.6 Score=43.19 Aligned_cols=158 Identities=16% Similarity=0.060 Sum_probs=119.7
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC-chH----HHHHcCChHHHHhcccC-CCccHHHHHHHHHHHh
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG-NKG----KAVRAGVVPTLMHLLTE-PGGGMVDEALAILAIL 546 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~----~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L 546 (661)
.+.+.+.+..|+..|..-+-+.+++++.+..++..... ++. ..+....-..|.-++.. .++++.-.+-.+|...
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 35566889999999999999999999999999877632 222 12222223333333322 4677778888899999
Q ss_pred cCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHhhhcCChHHHHHHH
Q 006099 547 SSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG---VMGPLVDLAQNGTDRGKRKAA 623 (661)
Q Consensus 547 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~~k~~A~ 623 (661)
+.++.....+.....+-.+.+.++.++-++...|..++..+-......+......+ ++.....++.+++.-+|+.+.
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 99998888888888899999999999999999999999998777776766666554 577888999999999999999
Q ss_pred HHHHHHH
Q 006099 624 QLLERMS 630 (661)
Q Consensus 624 ~lL~~L~ 630 (661)
.+|..+-
T Consensus 231 kLL~ell 237 (335)
T PF08569_consen 231 KLLGELL 237 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 211
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.71 E-value=0.11 Score=41.00 Aligned_cols=44 Identities=30% Similarity=0.640 Sum_probs=32.3
Q ss_pred cCcCCccccc----CCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 263 RCPISLELMK----DPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~m~----dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.||-|.--|. =|+.- .|.|.|--.||.+|++. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4566655442 13433 69999999999999994 568999998764
No 212
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.088 Score=52.27 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=38.9
Q ss_pred cCcCCc-ccccCCe----ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 006099 263 RCPISL-ELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 311 (661)
Q Consensus 263 ~CpIc~-~~m~dPv----~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 311 (661)
.||.|. ..+.+|- +-+|||+.|-+|....|..|...||.|...+-...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 489997 4555663 238999999999999999999999999887654443
No 213
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.68 E-value=0.3 Score=45.39 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=97.7
Q ss_pred CChHHHHHHHcc--CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH-
Q 006099 437 GAVPSIVHVLRI--GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG- 513 (661)
Q Consensus 437 g~i~~Lv~lL~~--~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~- 513 (661)
..+..++..|.. .++++|..+.-++..+- +..+.. +..-+-+.+-.++..++.+....++.++..|-.....-.
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345566666654 46788888888887773 222222 222223333444444445567778888888776655543
Q ss_pred HHH-HcCChHHHHhccc--CCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-CCHH-HHHHHHHHHHH
Q 006099 514 KAV-RAGVVPTLMHLLT--EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPR-NRENAAAVLVH 586 (661)
Q Consensus 514 ~iv-~~g~v~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~ke~A~~~L~~ 586 (661)
.+. ..|.++.++.+.. ..+..++..++.+|..-|.....|..+.+ .+++.|-++++. .++. +|..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 343 6899999999998 67888889999999988888888877766 478999999964 4455 67877766653
No 214
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.64 E-value=0.48 Score=40.06 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHhhCC
Q 006099 495 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNG 572 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~ 572 (661)
++.++.+|...+..-.....-.-.-++++++..+.+++..++..|+.+|.|++..-. ..+.. ...+..|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 344566666665554444333345689999999999999999999999999986543 33332 24678888888888
Q ss_pred CHHHHHHHHHHHHHH
Q 006099 573 SPRNRENAAAVLVHL 587 (661)
Q Consensus 573 ~~~~ke~A~~~L~~L 587 (661)
++.+|..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88887766 455444
No 215
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.61 E-value=0.91 Score=45.41 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccC-CCcchhHhhhCCChHHHHHHHcc
Q 006099 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRI 448 (661)
Q Consensus 371 ~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~ 448 (661)
...|+..|.-++--++..|..+.....+..|+.+|.. ..+.++..++.+|..+-. ++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4557788888887789999999999999999999954 678999999998888755 47788888899999999999987
Q ss_pred C--CHHHHHHHHHHH-HHcc
Q 006099 449 G--SMEARENAAATL-FSLS 465 (661)
Q Consensus 449 ~--~~e~~~~a~~~L-~~Ls 465 (661)
. +.+++-.++..| ++|.
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 6 568887777766 4444
No 216
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.59 E-value=2.8 Score=43.46 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=109.5
Q ss_pred hHHHHHH-HHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-C-cc-
Q 006099 354 TKIEILL-CKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-E-DN- 429 (661)
Q Consensus 354 ~~i~~Lv-~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~-~~- 429 (661)
+.+..|+ ..+.+.++.+|..|+++|+..+--+.+.. ...++.+...++.++..++..|+.++..+..- . ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 67788999999999999999886444322 12467788888778999999999999987532 1 11
Q ss_pred ----h--hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcC----CHHHHHHHH
Q 006099 430 ----K--GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEG----TQRGKKDAA 499 (661)
Q Consensus 430 ----k--~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~ 499 (661)
. ........+..+...|.+.+++++..|+..+..|-..+.... ....+..|+-+--+. +.+.+.--.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 112234577788888888899999999999999876654322 123344444333222 234443333
Q ss_pred HHHHHhhcccCchHHHHHcCChHHHHhcccC
Q 006099 500 TALFNLCIYQGNKGKAVRAGVVPTLMHLLTE 530 (661)
Q Consensus 500 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~ 530 (661)
..+-..+.........+..+.++.+..+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556555555566666777777776654
No 217
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.052 Score=42.30 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=31.8
Q ss_pred ccCcCCcccccC-Ceec-CCCccccHHHHHHHHHh--CCCCCCCCCCCCc
Q 006099 262 FRCPISLELMKD-PVIV-STGQTYERSCIEKWLEA--GHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m~d-Pv~~-~cg~t~~r~~I~~w~~~--~~~~cP~~~~~l~ 307 (661)
-.||-|.-.=.| |.+. .|.|.|-..||.+|++. ....||+||+.++
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 344544433333 3333 68899999999999983 4468999998764
No 218
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.50 E-value=2.8 Score=46.73 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=85.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-cchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~-~~k~~ 432 (661)
.....++...+ ++...+.-|...|....+..|+.... +|..++.+..++|..+|..|+..|-.+|.+. +.-..
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34455555544 57888999999999998877776544 5788999999999999999999999999873 34343
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh---cCCHHHHHHHHHHHH
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---EGTQRGKKDAATALF 503 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~ 503 (661)
+.+.|+++|.+.++.-...+-.+|..|-..+. .+.+..|...+. +++..+++.++..|.
T Consensus 97 -----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 -----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 35778899988876555555555555533222 244556666665 567777888777664
No 219
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.39 E-value=3.9 Score=38.83 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCc-HHHHHhh
Q 006099 409 DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAI-PPLVTLL 487 (661)
Q Consensus 409 ~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i-~~Lv~lL 487 (661)
|+.+|.+++.+++.|+..-.+ + -...++.+...|.+.++.+|..|+.+|..|...+.-+.+ |-+ ..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 467899999999988764221 1 133578899999999999999999999999765532222 333 7778888
Q ss_pred hcCCHHHHHHHHHHHHHhhcc
Q 006099 488 SEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 488 ~~~~~~~~~~a~~aL~nL~~~ 508 (661)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999876
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.37 E-value=10 Score=40.79 Aligned_cols=186 Identities=14% Similarity=0.116 Sum_probs=118.7
Q ss_pred HHHhhCCCChHHHHHHHHHHHhccCCC----cchhHhhhCCChHHHHHHHccC-------CHHHHHHHHHHHHHcccCCc
Q 006099 401 LVGLLSTPDSRTQEHAVTALLNLSICE----DNKGSIVSSGAVPSIVHVLRIG-------SMEARENAAATLFSLSVIDE 469 (661)
Q Consensus 401 Lv~lL~s~~~~i~~~A~~~L~nLs~~~----~~k~~i~~~g~i~~Lv~lL~~~-------~~e~~~~a~~~L~~Ls~~~~ 469 (661)
+..+++..+.+-|-.|+.....+.++. .+|..+.++=|++.+-++|.++ +.-.+..++.+|.-+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 455666666666777777777777653 4677888998999999999653 12356677788888888776
Q ss_pred h--hhhhhhcCCcHHHHHhhhcC-CH------HHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCC-ccHHHHH
Q 006099 470 N--KVTIGASGAIPPLVTLLSEG-TQ------RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPG-GGMVDEA 539 (661)
Q Consensus 470 ~--~~~i~~~g~i~~Lv~lL~~~-~~------~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~-~~~~~~a 539 (661)
- ...+ -+.||.|.+++..+ ++ ....++-.+|..++..+.+...++..|+++.+.++-.-++ ..-..-+
T Consensus 96 lAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 2223 25689999998754 22 2567888999999999888889999999999987754432 2222333
Q ss_pred HHHHHHhcC----ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 540 LAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 540 l~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
+.++.-+.. +++.-..+.. .+..+..=+...+...|-..+.+|..+...
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 333332222 2222222221 133333333334556677888888865443
No 221
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.33 E-value=6.4 Score=42.35 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCCc----hhhhhhhcCCcHHHHHhhhcCC-------HHHHHHHHHHHHHhhcccC
Q 006099 442 IVHVLRIGSMEARENAAATLFSLSVIDE----NKVTIGASGAIPPLVTLLSEGT-------QRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 442 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~aL~nL~~~~~ 510 (661)
+..+++..+.+-+-.|.-....+..+++ +|..+.+.-+++.+-++|.+++ .-.+..++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455555555566666666677777654 5777888888899999998652 2335667788888888877
Q ss_pred c--hHHHHHcCChHHHHhcccC-CCcc------HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC-HHHHHHH
Q 006099 511 N--KGKAVRAGVVPTLMHLLTE-PGGG------MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENA 580 (661)
Q Consensus 511 ~--~~~iv~~g~v~~Lv~lL~~-~~~~------~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~ke~A 580 (661)
- ...|+ +.||.|..++.. .+++ +.+.+-.+|..++..+.|...++..|+++.+.++-...+ .....-|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 33555 478999999865 3343 889999999999999999999999999999987654322 2234444
Q ss_pred HHHHHHHh
Q 006099 581 AAVLVHLC 588 (661)
Q Consensus 581 ~~~L~~L~ 588 (661)
..++.-+.
T Consensus 174 l~Vlll~~ 181 (698)
T KOG2611|consen 174 LKVLLLLV 181 (698)
T ss_pred HHHHHHHH
Confidence 44444443
No 222
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.18 E-value=2.4 Score=45.23 Aligned_cols=270 Identities=18% Similarity=0.118 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHH-HHHHHHHhccCCCcc
Q 006099 353 RTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQE-HAVTALLNLSICEDN 429 (661)
Q Consensus 353 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~-~A~~~L~nLs~~~~~ 429 (661)
.+-+..++..|.+ .....|+.++-.|..-+. ++..|..+...|.+..+++.+.. ++..+.- .++.++.-++.+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 3567888888884 344678888888887775 88999999999999999999955 3332333 334444445555544
Q ss_pred hhHhhhCCChHHHHHHHccC-----CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc---------CCHHHH
Q 006099 430 KGSIVSSGAVPSIVHVLRIG-----SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE---------GTQRGK 495 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~ 495 (661)
-..+...+.+..++.++.-. ..... .....+-.++. .+.+..+...+.. .....+
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~----------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSD----------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchh----------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccc
Confidence 44444666667767777610 00000 00000000000 0111111111100 112233
Q ss_pred HHHHHHHHHhhc--------------c-cCchHHHHHcCChHHHHhcccC----C-------C-----ccHHHHHHHHHH
Q 006099 496 KDAATALFNLCI--------------Y-QGNKGKAVRAGVVPTLMHLLTE----P-------G-----GGMVDEALAILA 544 (661)
Q Consensus 496 ~~a~~aL~nL~~--------------~-~~~~~~iv~~g~v~~Lv~lL~~----~-------~-----~~~~~~al~~L~ 544 (661)
..|..+|-.++. . +.-|..+.+.|++..++..+.+ . . ......++.+|-
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 445555555531 1 1124566778889998888751 1 1 134566888888
Q ss_pred HhcCCh-hhHHHHHhC--CChHHHHH-HhhC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc----
Q 006099 545 ILSSHP-EGKAAIGAA--EAVPVLVE-VIGN---GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN---- 613 (661)
Q Consensus 545 ~L~~~~-~~~~~i~~~--g~i~~Lv~-lL~~---~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~---- 613 (661)
+.+... +++...... +.++.+.. ++.. ..+.....++.++.|+..++|..+..+...++...+..+...
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~ 327 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCV 327 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccc
Confidence 887654 444444332 33433333 3332 223446788999999999998777666555443333222211
Q ss_pred ----------CChHHHHHHHHHHHHHHhhHH
Q 006099 614 ----------GTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 614 ----------~~~~~k~~A~~lL~~L~~~~~ 634 (661)
..-+..--+..+|=||.++++
T Consensus 328 ~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 328 LSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccccccccchHHHHHHHhHHHheeeCc
Confidence 123344556666666665543
No 223
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.17 E-value=1.8 Score=49.81 Aligned_cols=179 Identities=12% Similarity=0.096 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHcccCCchhhhhhh---cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHh
Q 006099 450 SMEARENAAATLFSLSVIDENKVTIGA---SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMH 526 (661)
Q Consensus 450 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~ 526 (661)
.+-++..|+++++.-+ +..... .+++..|+++....+.++.-....+|+..+..+.......+..+.|-.+.
T Consensus 504 ~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYC-----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred CCchhHHHHHHHHhcc-----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 4556777777777666 222222 27788888888877888888888899999999888888888888888888
Q ss_pred cccC--CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC----HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006099 527 LLTE--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS----PRNRENAAAVLVHLCAGDQQYLAEAKE 600 (661)
Q Consensus 527 lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~ke~A~~~L~~L~~~~~~~~~~~~~ 600 (661)
++.. .++-+...+-.++..|+....+..-+. ...+|.++.+|.... +...--|+.+|.-+.++.+.-.....-
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 7743 677778888888888877544443332 247999999998654 555667777887777766643333333
Q ss_pred cCCHHHHHHhh-hcCChHHHHHHHHHHHHHHhhHH
Q 006099 601 LGVMGPLVDLA-QNGTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 601 ~g~i~~L~~ll-~~~~~~~k~~A~~lL~~L~~~~~ 634 (661)
.-+.|++.... ++++...-..|.++|+.+-....
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 34667776665 55677778889999998876543
No 224
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.14 E-value=0.063 Score=60.93 Aligned_cols=47 Identities=21% Similarity=0.646 Sum_probs=35.9
Q ss_pred CccCcCCccccc--C---Ce--ecCCCccccHHHHHHHHHh-CCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMK--D---PV--IVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~--d---Pv--~~~cg~t~~r~~I~~w~~~-~~~~cP~~~~~l~ 307 (661)
.-.|+||--++. | |- -..|.|.|..+|+.+||.. ++.+||.||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 346999988775 2 22 2347789999999999984 6689999997664
No 225
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.05 E-value=0.55 Score=37.27 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCC
Q 006099 495 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAE 560 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g 560 (661)
.+.|++++.+++..+.....+.+.++++.++++... +...++-.|..+|.-++.+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 478999999999988888777788999999999965 778899999999999999999998887765
No 226
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.00 E-value=0.1 Score=52.45 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=36.3
Q ss_pred CCccCcCCccccc--CCee--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 260 DDFRCPISLELMK--DPVI--VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 260 ~~f~CpIc~~~m~--dPv~--~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
+++ ||+|.+.|. |--. .+||...|+-|+......-+..||.||...+...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 444 999999985 3222 4689888888876655555678999998776544
No 227
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.94 E-value=2 Score=46.83 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=115.4
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..+..++....+ .++..+..+++.+..+...-+..- .-.+++..+...+ ...+...+..++.++.-+++ .
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----a 260 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITK-----A 260 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----H
Confidence 355666666554 446777888888887774311111 0012233333333 23344445555554444432 2
Q ss_pred Hhh-----hCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-Cch--------hhhhhhc----CCcHHHHHhhhcCCHH
Q 006099 432 SIV-----SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DEN--------KVTIGAS----GAIPPLVTLLSEGTQR 493 (661)
Q Consensus 432 ~i~-----~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~--------~~~i~~~----g~i~~Lv~lL~~~~~~ 493 (661)
.++ ....+..++.+|.+ +++...++..+.-|..+ ++. ...+.+. ..+|.|++..+..+..
T Consensus 261 Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 261 LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 222 12345667777766 67788888888888766 322 2223333 4567777777776777
Q ss_pred HHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccCCCccHHHHHHHHHHHhcCCh
Q 006099 494 GKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 550 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 550 (661)
.+..-+.||.++..+-+....+-+ ...+|.|++.|..++..++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888889999999887664443333 458888999998889999999999999877655
No 228
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.91 E-value=0.039 Score=61.29 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=39.5
Q ss_pred CccCcCCcccccCCee---cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 261 DFRCPISLELMKDPVI---VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~---~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
+-.||+|..-+.|-.+ ..|+|.||..||..|.. ...+||.|+..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhee
Confidence 4579999988877654 47999999999999998 678999999887643
No 229
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.74 E-value=1.3 Score=42.26 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC---------CChHHHHHHHHHHHh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST---------PDSRTQEHAVTALLN 422 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s---------~~~~i~~~A~~~L~n 422 (661)
......+++.+.+..... +.+..|+...+.. ...-..+++.|++..|+.+|.. .+...+..++.+|..
T Consensus 65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 356778888887765433 4555555544333 3445667788999999998853 355788889999999
Q ss_pred ccCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcc
Q 006099 423 LSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLS 465 (661)
Q Consensus 423 Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls 465 (661)
+..+..+...++ ..+++..|+..|.+.+..++..++.+|..+|
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887766666666 6899999999999999999999999998876
No 230
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=2 Score=49.14 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=129.5
Q ss_pred CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh
Q 006099 408 PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487 (661)
Q Consensus 408 ~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 487 (661)
+-+.++-.++..|..+.....-+..+...+++......|++.++-+--+|+..+..||.. .....+|-|.+.=
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 334566677777777776555556667788888888888888777777777777677643 2234556666532
Q ss_pred hcCC----HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH--HHHHhCCC
Q 006099 488 SEGT----QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK--AAIGAAEA 561 (661)
Q Consensus 488 ~~~~----~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~--~~i~~~g~ 561 (661)
.+.+ ++.+...=.++.++...-+.-..=..+-.+...+...++++...+..+++.+++||.--.++ ..+. .+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 2211 12222222445554443222111111234445566666777788999999999998754432 2222 25
Q ss_pred hHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHH---HcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006099 562 VPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAK---ELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSR 631 (661)
Q Consensus 562 i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~---~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~ 631 (661)
+..++.+.+ ++++-+|..|+.++..+-.+.+...-.+. -......+..+.... ++.++-.|...+..+-.
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 566666665 46788999999999988776654333322 224556666666655 55566677766665543
No 231
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.68 E-value=0.19 Score=36.78 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=23.0
Q ss_pred ccCcCCcccccCCee-cCCCcc--ccHHHHHHHH-HhCCCCCCCCCCC
Q 006099 262 FRCPISLELMKDPVI-VSTGQT--YERSCIEKWL-EAGHRTCPKTQQT 305 (661)
Q Consensus 262 f~CpIc~~~m~dPv~-~~cg~t--~~r~~I~~w~-~~~~~~cP~~~~~ 305 (661)
+.|||+...|.-|+. ..|.|. |+-..+-... ..+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 689999999999997 479885 5543332222 2455789999764
No 232
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.58 E-value=13 Score=37.12 Aligned_cols=226 Identities=17% Similarity=0.122 Sum_probs=128.5
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 356 IEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 356 i~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
+..+.+.|.+ .....+..|+-.|+++.. +.. |..+.+...+++.........+|+ ++
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~~~---------i~~i~ka~~d~s~llkhe~ay~Lg----------Q~ 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLG--PAA---------IKAITKAFIDDSALLKHELAYVLG----------QM 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCC--hHH---------HHHHHHhcccchhhhccchhhhhh----------hh
Confidence 4445555544 233456677777777653 222 333333333332223333444443 33
Q ss_pred hhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 434 VSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
....+++.++.+|... .+-+|-.|+.+|.++. . ....+.|-+..++....+++.+..|+..+-..+..
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 4577899999999766 4667889999998875 2 23445555555444556666666666666432211
Q ss_pred hH-----HH--------HHcCChHHHHhcccCCCccH--HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHH
Q 006099 512 KG-----KA--------VRAGVVPTLMHLLTEPGGGM--VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRN 576 (661)
Q Consensus 512 ~~-----~i--------v~~g~v~~Lv~lL~~~~~~~--~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 576 (661)
.. .. ...+-|..|-..|.+.+... +..|+..|.|+... ..|..|.+=+..++.-.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHH
Confidence 11 00 01112233333332211111 12233333333221 24566666677778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--ChHHHHHHHHHHHHHHhhH
Q 006099 577 RENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 577 ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~L~~~~ 633 (661)
|..++.++..|-+.. .++.|...+... .+.+|..|+.+|..+.+-.
T Consensus 204 rhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADED 251 (289)
T ss_pred HHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH
Confidence 999999999886543 688888888654 7889999999999998543
No 233
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.53 E-value=15 Score=40.58 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=153.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
.+.+.-+.+.+.+|..+..|+-+++....+.......-.-..++|.+.....++...+...+.|+++.++.+ ....|-
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~ 444 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIIS 444 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcC
Confidence 455566667788999999999999988754433333333356788888888877778888999999988753 122233
Q ss_pred hCCChHHHHHHHccC---CHHHHHHHHHHHHHcccCCchhhhhhhc---CCcHHHHHhhhc------CCHHHHHHHHHHH
Q 006099 435 SSGAVPSIVHVLRIG---SMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLSE------GTQRGKKDAATAL 502 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~------~~~~~~~~a~~aL 502 (661)
..|-++..+..+--| .+....++.|...||...-.-...-..+ .+-+.++.-|-. .+...+..+..+|
T Consensus 445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL 524 (858)
T COG5215 445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL 524 (858)
T ss_pred ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 456666666554433 4677788889998886542111100111 222333333221 2334556666677
Q ss_pred HHhhcccCchHHHHHcC-----------ChHHHHhcccCCC----ccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHH
Q 006099 503 FNLCIYQGNKGKAVRAG-----------VVPTLMHLLTEPG----GGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLV 566 (661)
Q Consensus 503 ~nL~~~~~~~~~iv~~g-----------~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv 566 (661)
..|......-..=+-.| .+..+-+.|...+ .+++..-+.+|..+... +...+.+ +...+..++
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~ 603 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFI 603 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHH
Confidence 76654433222111111 2233333332222 23344444444433221 1111111 112455677
Q ss_pred HHhhCCCHH-HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 567 EVIGNGSPR-NRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 567 ~lL~~~~~~-~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
++|.+..+. +-.....++.+|...-+ ..-+..-..++|.|..-++-.+..+...|..++..|++.-
T Consensus 604 r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 604 RILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 777766443 34555666777765322 2223333468899998887677778888999988887654
No 234
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=5.5 Score=45.17 Aligned_cols=136 Identities=16% Similarity=0.247 Sum_probs=81.4
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc-----------CCHHHHHHHHHHHHHhh
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-----------GTQRGKKDAATALFNLC 506 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~nL~ 506 (661)
.+-.++++|.+.+.+++..+......|+.. .-+.-++.+|+. .+.+-+..-+.+++..+
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 333445566666667777776666666543 333444555531 12344566677777776
Q ss_pred cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh-cCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHH
Q 006099 507 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL-SSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVL 584 (661)
Q Consensus 507 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L 584 (661)
..-.. +.+.+|+.|++++.+.+.......+..+... =..|.-|..+ +..|++-+. -.+...-+.|+|++
T Consensus 388 v~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 388 VKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred hcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHH
Confidence 64322 2356788999999988876666666665533 2344444444 334444443 24567788899999
Q ss_pred HHHhcCCH
Q 006099 585 VHLCAGDQ 592 (661)
Q Consensus 585 ~~L~~~~~ 592 (661)
+.-|....
T Consensus 459 GeYce~~~ 466 (948)
T KOG1058|consen 459 GEYCEGLS 466 (948)
T ss_pred HHHHhhhH
Confidence 99888765
No 235
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=91.50 E-value=3.8 Score=47.56 Aligned_cols=268 Identities=18% Similarity=0.213 Sum_probs=157.8
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 355 KIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 355 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
.+..+.+.+.. ..+.++..+...+.++++.-.. .....+.+|.++.++.+....+++.|+..+.++...-.....
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d- 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD- 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-
Confidence 34555555554 4567777788888888764333 566678999999999998899999999988888543111111
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc--Cc
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ--GN 511 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~~ 511 (661)
......+.++....+++..++...+.....|+..=. ...+...-+++...+++....+++..++.-...++.+. +.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 123467788888888888888888888777764311 13444456777788887766666655555444444432 23
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
...+....+++.+-.+..+.+..+....+....++.-.-. +..- -.-..|.+...+++..+.++.+-.+.+..+-...
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 4455555567777777777777666665555544432111 1000 0124555566666666777777665554443322
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 592 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+..-........+|.+..+......+++.+..+-+..++
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 222222333334555555544444444444444444443
No 236
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.32 E-value=2.3 Score=42.56 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh
Q 006099 535 MVDEALAILAILS-SHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 535 ~~~~al~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 612 (661)
....|+.+|.-++ -+|..+..+.+...+..++.+|. ...+.++..++.+|..+...++.+...+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3455778887554 57888999999999999999994 467889999999999999999999999999999999999998
Q ss_pred cC--ChHHHHHHHHHHHHH
Q 006099 613 NG--TDRGKRKAAQLLERM 629 (661)
Q Consensus 613 ~~--~~~~k~~A~~lL~~L 629 (661)
+. +..++-|..+.|...
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 65 678888888877755
No 237
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=12 Score=44.38 Aligned_cols=242 Identities=19% Similarity=0.156 Sum_probs=132.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
..+..|++.+++.+..++..|++.+..++...+. .+++ .+|...+.++.-. +...-..|+.+|..|+.-.--...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5777888888889999999999999999987662 2222 2455556655432 355556888889888753111000
Q ss_pred hhhCCChHHHHHHHcc--------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHH-----hhhcCCHHHHHHHH
Q 006099 433 IVSSGAVPSIVHVLRI--------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT-----LLSEGTQRGKKDAA 499 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~--------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-----lL~~~~~~~~~~a~ 499 (661)
. -..+++.|+.-|.- ...-+|..|+.+++.++...+... .+ +++..|.. .+-+....++..|.
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~--l~-p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD--LK-PVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh--hh-HHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 0 12345555555531 124588899988888876543211 00 12222222 22344567888888
Q ss_pred HHHHHhhcccCchHHHHHcCChHHHHhcccCCC---ccHHHHHHHHHH-HhcCChhhHHHHHhCCChHHHHHH-hhCCCH
Q 006099 500 TALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPG---GGMVDEALAILA-ILSSHPEGKAAIGAAEAVPVLVEV-IGNGSP 574 (661)
Q Consensus 500 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~---~~~~~~al~~L~-~L~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~ 574 (661)
.|+........|... + +.++...| ...+.+|-..|. .++..+..+.-+.+ .|+.. +.+-+.
T Consensus 493 AAlqE~VGR~~n~p~-----G----i~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPH-----G----ISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHhccCCCCCC-----c----hhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccH
Confidence 888877666555421 1 11111111 111111111111 22223322222222 22221 344578
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHH
Q 006099 575 RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRK 621 (661)
Q Consensus 575 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 621 (661)
.+|+.|+++|..|....|++. ..+..++|+....+++...+.-
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~----a~~~L~~lld~~ls~~~~~r~g 601 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYL----ADYVLPPLLDSTLSKDASMRHG 601 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhh----cccchhhhhhhhcCCChHHhhh
Confidence 889999999999887766443 3356667776666665555443
No 238
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.19 E-value=0.16 Score=36.44 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=21.8
Q ss_pred CcCCccccc--CCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 264 CPISLELMK--DPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 264 CpIc~~~m~--dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
||+|.+.|. |--.. +||.-+|+.|..+-...++..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988882 22233 57999999998887766778999998764
No 239
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.12 E-value=0.78 Score=44.92 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHhcCChhhHHHHHhCCC-------hHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCH
Q 006099 534 GMVDEALAILAILSSHPEGKAAIGAAEA-------VPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYL-AEAKELGVM 604 (661)
Q Consensus 534 ~~~~~al~~L~~L~~~~~~~~~i~~~g~-------i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~-~~~~~~g~i 604 (661)
.-+..|+.+|..|+..+.+...+..++- +..|+++|. ..++-.||.|+.+|.+||..+...+ ....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4578999999999999988888877654 344555554 3568889999999999999988666 555778899
Q ss_pred HHHHHhhhcCChHH
Q 006099 605 GPLVDLAQNGTDRG 618 (661)
Q Consensus 605 ~~L~~ll~~~~~~~ 618 (661)
..|+.++......+
T Consensus 219 ~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 219 SHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998764433
No 240
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.13 Score=52.00 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.++-.||||----...|+.||||.-|..||.+++- +...|=.|+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 36778999987777888899999999999999998 6777888866554
No 241
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=7.5 Score=47.57 Aligned_cols=215 Identities=16% Similarity=0.154 Sum_probs=118.9
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHh-ccCCCcchh
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN-LSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~n-Ls~~~~~k~ 431 (661)
+.+-.+++.-++ ..|..+.-|+..+..+++...+ +..-.-...||.|.++=.+++..+|.. +.-++| |..|..+-.
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKVV 1033 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHHH
Confidence 444444444443 3466677777777777653311 111111246888888888899999866 444555 444433222
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcCCHHHH---HHHHHHHHHhhc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGK---KDAATALFNLCI 507 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~---~~a~~aL~nL~~ 507 (661)
.-.-..+++.|+.-|.+.-+.+|+.++-+|..|-...++-...-.- .....+.+..++-.+.++ ..++.+|..|+.
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223445666666666667899999999999998775432221111 333444444443333444 345667777654
Q ss_pred cc-----CchHHHHHcCChHHHHhccc-----CCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCH
Q 006099 508 YQ-----GNKGKAVRAGVVPTLMHLLT-----EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP 574 (661)
Q Consensus 508 ~~-----~~~~~iv~~g~v~~Lv~lL~-----~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 574 (661)
.- ..+..- ++..++.+|- +.-.+++..++.++..|+.+....-.-.-...+|.|++....-+|
T Consensus 1114 r~~d~~~~~~~~~----~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKE----ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred hhcccCCcccHHH----HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch
Confidence 21 112221 2333444432 344678889999999998765442221222356666666654444
No 242
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=4.6 Score=48.06 Aligned_cols=221 Identities=17% Similarity=0.206 Sum_probs=127.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHh--CCHHHHHHhhCCCChHHHHHHHHHHHhccCC--CcchhHhhhCCChH
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEA--GAIPLLVGLLSTPDSRTQEHAVTALLNLSIC--EDNKGSIVSSGAVP 440 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~--~~~k~~i~~~g~i~ 440 (661)
+.+..+|.++...|..++.. +.......+. ..-..|..-+++.+...+..++.+|..|-.. .+....+ ...|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 34788999999999999864 2222222111 1223333344445566677777777666432 1222222 22344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccc----CCchhhhhhhcCCcHHHHHhhhcC--CHHHHHHH--HHHHHHhhcccCch
Q 006099 441 SIVHVLRIGSMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLLSEG--TQRGKKDA--ATALFNLCIYQGNK 512 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a--~~aL~nL~~~~~~~ 512 (661)
.++-.++..+...+++|-.+|..+.. .++.... ....|...+..+..+ .......+ +.++..+.....+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444466688899999999988872 1111111 122445555555544 22222222 44555554433222
Q ss_pred H-HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 513 G-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 513 ~-~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
. ...-.+.+..+..+|.+.++++...|++.+..++. .|+....-.....++.++.++++.....+...-..|-.|+..
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1 11223456666677778999999999999997765 344443333334788899988888888888888888877764
No 243
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=6.4 Score=44.66 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=21.6
Q ss_pred ChHHHHhcccCCCccHHHHHHHHHHHhcCCh
Q 006099 520 VVPTLMHLLTEPGGGMVDEALAILAILSSHP 550 (661)
Q Consensus 520 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 550 (661)
.+--++++|..++.+++..++.+...|..+.
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 3444566677788888888888777776654
No 244
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.46 E-value=0.54 Score=30.41 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=25.5
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 562 VPVLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 562 i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
+|.+++++.+.++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998753
No 245
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.45 E-value=0.14 Score=37.57 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=35.4
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
+..|-.|...=...++++|||..|+.|..-+ ...-||.|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 3456677777777889999999999996554 446799999988643
No 246
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=90.35 E-value=7.4 Score=45.62 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=123.6
Q ss_pred hhhCCChHHHHHHHcc-----CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh----cCC----HHHHHHHH
Q 006099 433 IVSSGAVPSIVHVLRI-----GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----EGT----QRGKKDAA 499 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~-----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~ 499 (661)
+.+.||+..++.++.+ +..++....+.+|...+....||..+.+.|+++.|++.+. .+. ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4578999999999975 2456777788888888888999999999999999999986 222 45555556
Q ss_pred HHHHHhhcccCchHH-----HHHcC--------ChHHHHhcccC----CCccHHHHHHHHHHHhcCChhhHHH-HHhCCC
Q 006099 500 TALFNLCIYQGNKGK-----AVRAG--------VVPTLMHLLTE----PGGGMVDEALAILAILSSHPEGKAA-IGAAEA 561 (661)
Q Consensus 500 ~aL~nL~~~~~~~~~-----iv~~g--------~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~~~~-i~~~g~ 561 (661)
.++..|......... ..... -+..|++.+.+ .++.+....+++|-.|+........ +++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 555555443221111 11111 25566666655 3577888889999999987765533 3331
Q ss_pred hHHHHHHhhC---CCHHHHHHHHHHHHHHhc----CC--HHHHHHHHHcCCHHHHHHhhhcCChH--------H------
Q 006099 562 VPVLVEVIGN---GSPRNRENAAAVLVHLCA----GD--QQYLAEAKELGVMGPLVDLAQNGTDR--------G------ 618 (661)
Q Consensus 562 i~~Lv~lL~~---~~~~~ke~A~~~L~~L~~----~~--~~~~~~~~~~g~i~~L~~ll~~~~~~--------~------ 618 (661)
+...+++=.- .++..+ ..+..+..++. +. ...+..+++.|++...+.++....+. -
T Consensus 271 F~p~l~f~~~D~~~~~~~~-~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQ-FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HHHhcChhhcccccCchHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 2222222111 111111 12333333332 22 25567888899999888888654322 2
Q ss_pred --HHHHHHHHHHHHhhHHHHHHHHh
Q 006099 619 --KRKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 619 --k~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
-..+..+|.-|+...+..+..++
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~ 374 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIA 374 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHH
Confidence 23356666666665555544443
No 247
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.33 E-value=0.35 Score=31.27 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998864
No 248
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.28 E-value=0.55 Score=41.05 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=58.0
Q ss_pred ChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 561 AVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 561 ~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.+..|+.+|. +.++.+..-|+.=|..++...|..+..+.+.|+-..++.++.+++++++..|..++.-+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5788999994 345677777888899999988888888889999999999999999999999999987654
No 249
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.19 E-value=5.3 Score=38.69 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=102.6
Q ss_pred HHHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc---C--CHHHHHHHHHHHHHcccCCc--hhhhhhhcCCcHHHHHh
Q 006099 414 EHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI---G--SMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTL 486 (661)
Q Consensus 414 ~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~---~--~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l 486 (661)
.+|+.+|--++.+++.|..++++..--.+..+|.. . -+-+|..+..++..|..++. ....+.....+|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 45666666678889999888877655555555543 2 24578889999999988764 34556667999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcccCchHHHH----H----cCChHHHHhcc-cCCCccHHHHHHHHHHHhcCChhhHHHHH
Q 006099 487 LSEGTQRGKKDAATALFNLCIYQGNKGKAV----R----AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIG 557 (661)
Q Consensus 487 L~~~~~~~~~~a~~aL~nL~~~~~~~~~iv----~----~g~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~ 557 (661)
+..|++-.+..|+.++..+..++.+-..+- + ..++..++..+ +.+...+.+.++++-..||..+..|..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 999998888888888887766665433221 1 12333344433 33678889999999999999998887664
No 250
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.01 E-value=12 Score=40.14 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC----CcchhHhh--------hCCChH
Q 006099 373 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC----EDNKGSIV--------SSGAVP 440 (661)
Q Consensus 373 ~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~----~~~k~~i~--------~~g~i~ 440 (661)
.|+..|..+....+..-..+.+.|++..++..|+.+-....+. -.+-..+ ++.+.... ..+.+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 4667777777666677778889999999999887532111110 0011100 11111111 122222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccc-CCch---hhhhhh-cCCcHHHHHhhhcC---CHHHHHHHHHHHHHhhcccCch
Q 006099 441 SIVHVLRIGSMEARENAAATLFSLSV-IDEN---KVTIGA-SGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~-~~~~---~~~i~~-~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
.|+ ..+..+.. .... -..+.+ ......|..++++. .+.+.-.|+.++.....+++..
T Consensus 79 ~lL---------------k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLL---------------KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHH---------------HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 222 23333322 2211 222334 34455666666665 3567788899999988887776
Q ss_pred HH-HHHcCChHHHHhccc-C---CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCH--HHHH-HHH---
Q 006099 513 GK-AVRAGVVPTLMHLLT-E---PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP--RNRE-NAA--- 581 (661)
Q Consensus 513 ~~-iv~~g~v~~Lv~lL~-~---~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~ke-~A~--- 581 (661)
.. +.+.|.++.+++.+. . ++.++....-.+|..+|-+..|.+.+.+.+.++.+++++.+..- ..+. ..+
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 65 557999999999987 4 55666666778888999999999999999999999999975431 1111 122
Q ss_pred -HHHHHHhcCCHHHHHHHHH
Q 006099 582 -AVLVHLCAGDQQYLAEAKE 600 (661)
Q Consensus 582 -~~L~~L~~~~~~~~~~~~~ 600 (661)
..+-.|.++.|.-+..+++
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHHHccCHHHHHHHHH
Confidence 3334456666655544444
No 251
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.36 Score=46.87 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCCccCcCCcccccCCe----ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCcc
Q 006099 259 PDDFRCPISLELMKDPV----IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTP 313 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv----~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~ 313 (661)
...|.|||++-.|..-. +.+|||.|.-..+.+.- ..+|+.|+........++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 35699999999998764 35899999988887753 568999999998766443
No 252
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=10 Score=46.50 Aligned_cols=226 Identities=20% Similarity=0.172 Sum_probs=114.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCChHHHHHHHHHHHhcc--CCCcchh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLS--ICEDNKG 431 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs--~~~~~k~ 431 (661)
....|...+.+.++..+..++-=|-.+...-...+.... -......+.++|...|+-+|..|..-|+-.- .+...|.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 344555556678888776654322222211111111111 1223477888999999999999887776542 1333343
Q ss_pred HhhhCCChHHHHHHHccCCH---------HHH-------------HHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc
Q 006099 432 SIVSSGAVPSIVHVLRIGSM---------EAR-------------ENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE 489 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~---------e~~-------------~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 489 (661)
.+ +..|+.-|..|.- ++- ...-.=|++|+. .+++.+.|-..+++.++
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANH 967 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhh
Confidence 33 4445555533311 000 000111111111 11222223333333333
Q ss_pred C-CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHH
Q 006099 490 G-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVE 567 (661)
Q Consensus 490 ~-~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ 567 (661)
. .=..++-|+.-+..++.....+.+=.-...||.|.+.=.+++..++.....+=..|..++... ..... ..+.-|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 2 112333444444444444332222222347788888777788887665554444555443222 22222 35666666
Q ss_pred HhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 568 VIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 568 lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
-|.+...++||.++-+|..|..+.+
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCC
Confidence 6667789999999999999988765
No 253
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=0.4 Score=49.36 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
..+.|..-.|-||.+-..+-+.++|||+.| |+.-. +....||.|++.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHHH
Confidence 334455567999999999999999999988 54332 24567999998654
No 254
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.55 E-value=0.091 Score=60.04 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=39.8
Q ss_pred ccCcCCcccccCCeecCCCccccHHHHHHHHHhC-CCCCCCCCCCCcCCC
Q 006099 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG-HRTCPKTQQTLTSTA 310 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~ 310 (661)
+.|++|.+ ..+|+++.|||.+|+.|+...+... ...||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 8889999999999999999988743 346999987665433
No 255
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.51 E-value=5.9 Score=44.31 Aligned_cols=164 Identities=19% Similarity=0.129 Sum_probs=103.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH---HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhC
Q 006099 360 LCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA---EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS 436 (661)
Q Consensus 360 v~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~ 436 (661)
+..+..-+++.+.-|+..||.+.++...+-..+- ...++..++..+. .++.-+..++++|.|+-.++.++..++..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3334445677888899999999887665544433 1235666666666 56778888999999998887777777643
Q ss_pred CChHHHHHHH---ccC-CHHHHHHHHHHHHHcccC--CchhhhhhhcCCcHHHHHhhhcC-----CHHHHHHHHHHHHHh
Q 006099 437 GAVPSIVHVL---RIG-SMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLLSEG-----TQRGKKDAATALFNL 505 (661)
Q Consensus 437 g~i~~Lv~lL---~~~-~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~nL 505 (661)
...+...+ ++. +..++...+....|++.. ..+ . +.+..+.|...+... +.+.....+.||.+|
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~-~---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN-E---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-c---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 22332222 222 345555555555555432 111 1 135556666665542 335566778899999
Q ss_pred hcccCchHHHHHcCChHHHHhcccC
Q 006099 506 CIYQGNKGKAVRAGVVPTLMHLLTE 530 (661)
Q Consensus 506 ~~~~~~~~~iv~~g~v~~Lv~lL~~ 530 (661)
+..+....++...--+..++.-+++
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHH
Confidence 9988888777776666667666654
No 256
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.44 E-value=14 Score=40.73 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=117.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc--------c
Q 006099 358 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED--------N 429 (661)
Q Consensus 358 ~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~--------~ 429 (661)
+|-..|++.-.-++.++++.+..++..+.. ..+. ...|..|-.+|++.....|-.|+++|-.|+.-.. +
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e 344 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE 344 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh
Confidence 333334444566888899888888765411 1111 1356778888999999999999999999975321 1
Q ss_pred hhHhh-h-C--CChHHHHHHHccCCHHHHHHHHHHHHHcccC--Cchhhhhhhc-------------CCcHHHHHhhh-c
Q 006099 430 KGSIV-S-S--GAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGAS-------------GAIPPLVTLLS-E 489 (661)
Q Consensus 430 k~~i~-~-~--g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~-------------g~i~~Lv~lL~-~ 489 (661)
-+.++ + . -..-.|..+|+.|+.+....-...+-++..+ +.++..+++. ..+..|...|. .
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e 424 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE 424 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 22222 1 1 2344567788888766555444444443322 1222211110 12334444333 2
Q ss_pred CCHHHHHHHHHHHHHhhccc-CchHHHHH--------cCChH---HHHhcccC---------------------CCccHH
Q 006099 490 GTQRGKKDAATALFNLCIYQ-GNKGKAVR--------AGVVP---TLMHLLTE---------------------PGGGMV 536 (661)
Q Consensus 490 ~~~~~~~~a~~aL~nL~~~~-~~~~~iv~--------~g~v~---~Lv~lL~~---------------------~~~~~~ 536 (661)
|.-+.++.++.+|..+..+. +.+.++.+ ...-+ .++.+|.. .+..++
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivR 504 (898)
T COG5240 425 GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVR 504 (898)
T ss_pred ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHH
Confidence 33444555555554444332 23322211 11111 12222221 233445
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 537 DEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 537 ~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
..|+.+|...+-+.+.. +.-..+...|-+.+.+.+.++|..|...|.++-
T Consensus 505 saAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 505 SAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 55666665444332211 011123345667788888999999999998885
No 257
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.44 E-value=11 Score=38.26 Aligned_cols=211 Identities=18% Similarity=0.149 Sum_probs=125.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CChHHHHHHHHHHHhccCCCcchhHhhhC
Q 006099 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSICEDNKGSIVSS 436 (661)
Q Consensus 359 Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~~~~~k~~i~~~ 436 (661)
|=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++.+|..|..... ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSP 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CCh
Confidence 4466788899999999999988765444322 223336677776654 465555555666666653221 111
Q ss_pred CChHHHHHH-HccC-----CHHHHHHHHHHHHHcccCCchhhhhh--hcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 006099 437 GAVPSIVHV-LRIG-----SMEARENAAATLFSLSVIDENKVTIG--ASGAIPPLVTLLSEG-TQRGKKDAATALFNLCI 507 (661)
Q Consensus 437 g~i~~Lv~l-L~~~-----~~e~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~ 507 (661)
+....+++. .++- ....|..+..+|..|.... ...+. ..+++..+++.+..+ ||+....+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 123333333 2221 3456777778887776443 23332 247888888888754 78888888888887766
Q ss_pred ccCchHHHHHcCChHHHHhcccC---------C-Cc-cHH-H-HHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCH
Q 006099 508 YQGNKGKAVRAGVVPTLMHLLTE---------P-GG-GMV-D-EALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSP 574 (661)
Q Consensus 508 ~~~~~~~iv~~g~v~~Lv~lL~~---------~-~~-~~~-~-~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 574 (661)
.-+. ....+.+.+.+.. + ++ .+. + -..++...++.++.. ..-++|.|++-|.++++
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSP 222 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCc
Confidence 5442 2233333333322 1 11 122 2 222333455555532 22478999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 006099 575 RNRENAAAVLVHLCAG 590 (661)
Q Consensus 575 ~~ke~A~~~L~~L~~~ 590 (661)
.+|..++.+|...+..
T Consensus 223 ~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 223 SVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886654
No 258
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.28 E-value=12 Score=40.26 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=109.0
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..+..++..+... ..+.+..|+..|..+...+...-+.-.-...+..+++.|.. .+..++..|+++|..++.+...|-
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4556666666654 56778889988877765553322221112245677888887 688889999999999986533221
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHH-HHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAA-ATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
.=-..-+|..+++.=++...++-..|. .++.-++..++.. .|..+..++.+.+...-..++..+..|+..-.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence 111122333344443444444443333 3444555444422 23344455555555555556666666655433
Q ss_pred chH-HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 511 NKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 511 ~~~-~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
... .-+-..+.|.+++...+.+..+++.|+.+|..+.
T Consensus 439 ~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 439 AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 222 1123578888999998888899999999887554
No 259
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.23 Score=50.99 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=37.8
Q ss_pred CccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.-.|-||+.--+|-+++||-|. .|..|-+... -.+..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 3579999999999999999995 7888876554 24567999999875
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.92 E-value=20 Score=41.75 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhh--hCCChHHHH
Q 006099 367 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIV--SSGAVPSIV 443 (661)
Q Consensus 367 ~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~--~~g~i~~Lv 443 (661)
.|..-..|...+...+....-+...+- -+....+..+.- ..+-++..|+.++...++- ..+. ..++++.|.
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGLL 536 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHHHH
Confidence 444455666666665543222221111 122333333332 3445666677766665521 1121 467788888
Q ss_pred HHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh--cCCHHHHHHHHHHHHHhhcccCchHHHHHcCCh
Q 006099 444 HVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVV 521 (661)
Q Consensus 444 ~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v 521 (661)
++....+.++......+|...+..+.-.....++...|..+.++- +.++.+...+-.++..|+....+...+.+ -.+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHH
Confidence 888777788888888999998888877777777788888888775 34677777777777777775555444443 578
Q ss_pred HHHHhcccCCC----ccHHHHHHHHHHHhcCC-hhh-HHHHHhCCChHHHHHH-hhCCCHHHHHHHHHHHHHHhcCCHHH
Q 006099 522 PTLMHLLTEPG----GGMVDEALAILAILSSH-PEG-KAAIGAAEAVPVLVEV-IGNGSPRNRENAAAVLVHLCAGDQQY 594 (661)
Q Consensus 522 ~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~ke~A~~~L~~L~~~~~~~ 594 (661)
|.++..|..+. .....-++.+|..+..+ |.. -..++. -++|.+.+. +++++..+-.++-.+|..+...+.+.
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 99999997755 66777788888755443 322 233333 356777664 56777888888889998888776654
Q ss_pred HHHH
Q 006099 595 LAEA 598 (661)
Q Consensus 595 ~~~~ 598 (661)
...-
T Consensus 695 ~~t~ 698 (1005)
T KOG2274|consen 695 LLTW 698 (1005)
T ss_pred HHhh
Confidence 4333
No 261
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.91 E-value=2.9 Score=42.47 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=109.5
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCC--ChHHHHHHHccC----CHHHHHHHHHHHHHcccCCchh
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSG--AVPSIVHVLRIG----SMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
...+...+.+...+.+--++-.+.-++.++..-..+...+ ....+..++... .+..+-.+++++.|+.....++
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3455555555444445556666665666655444443222 345555555433 5677888999999999988888
Q ss_pred hhhhhc-C-CcHHHHHhhhcC----CHHHHHHHHHHHHHhhcccCchH--HHHHcCChHHHHhcc-cC-CCccHHHHHHH
Q 006099 472 VTIGAS-G-AIPPLVTLLSEG----TQRGKKDAATALFNLCIYQGNKG--KAVRAGVVPTLMHLL-TE-PGGGMVDEALA 541 (661)
Q Consensus 472 ~~i~~~-g-~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~--~iv~~g~v~~Lv~lL-~~-~~~~~~~~al~ 541 (661)
..+... + .+-..+..+... +..++..+++.++|++..-.... .-.....+..++..+ .. .+++....++-
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 877776 4 454444444444 56777888889999975421111 001112344555533 23 68899999999
Q ss_pred HHHHhcCChhhHHHHHhC-CChHHHHHHh-hCCCHHHHHHHH
Q 006099 542 ILAILSSHPEGKAAIGAA-EAVPVLVEVI-GNGSPRNRENAA 581 (661)
Q Consensus 542 ~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL-~~~~~~~ke~A~ 581 (661)
+|++|...+......... |+-..+...- ....+++++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 999999877766666654 3333333333 234566666553
No 262
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.71 E-value=16 Score=39.13 Aligned_cols=95 Identities=13% Similarity=0.214 Sum_probs=75.3
Q ss_pred hCCHHHHHHhhCCC---ChHHHHHHHHHHHhccCCCcc-hhHhhhCCChHHHHHHHc-cC---CHHHHHHHHHHHHHccc
Q 006099 395 AGAIPLLVGLLSTP---DSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLR-IG---SMEARENAAATLFSLSV 466 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~---~~~i~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~-~~---~~e~~~~a~~~L~~Ls~ 466 (661)
......|...+++. ...+-..|+.++..+-.++.. -..+.++|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 33455566666664 467778888888888776554 556669999999999998 54 57888888899999999
Q ss_pred CCchhhhhhhcCCcHHHHHhhhc
Q 006099 467 IDENKVTIGASGAIPPLVTLLSE 489 (661)
Q Consensus 467 ~~~~~~~i~~~g~i~~Lv~lL~~ 489 (661)
+..+...+.+.+.++.+++++.+
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999998864
No 263
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=0.27 Score=50.63 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=34.0
Q ss_pred CccCcCCcccccCC--e--ecCCCccccHHHHHHHHHhC--CCCCCCCCCCCcCC
Q 006099 261 DFRCPISLELMKDP--V--IVSTGQTYERSCIEKWLEAG--HRTCPKTQQTLTST 309 (661)
Q Consensus 261 ~f~CpIc~~~m~dP--v--~~~cg~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~ 309 (661)
--.|.||-+..-.- + |-.|||+|.-.|+.+||.-. +++||.|+-.++..
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 34699995544211 1 23599999999999999832 25899998555543
No 264
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=9.9 Score=43.89 Aligned_cols=183 Identities=13% Similarity=0.130 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
+.+.....+..+.++...++-.|+..|+.+.+.. .....+...+++...+..|++.|.-+--+|+..+..|+.-
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence 3456777788888888889999999999998743 5666777889999999999999998888888877777632
Q ss_pred HhhhCCChHHHHHHHccC----CHHHHHHHHHHHHHcccC-C----chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHH
Q 006099 432 SIVSSGAVPSIVHVLRIG----SMEARENAAATLFSLSVI-D----ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~~-~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
.....++.+.+.-.+. .++.+-..-.++.++... . .++. -.+...+..+++.+...+..++.++
T Consensus 799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~l 871 (982)
T KOG4653|consen 799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANL 871 (982)
T ss_pred --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHH
Confidence 3445566666633221 122232233333333211 0 1111 1233344444555556678888888
Q ss_pred HHhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhc
Q 006099 503 FNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILS 547 (661)
Q Consensus 503 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~ 547 (661)
++||.-...+..=.-..++..++.+... ++.-++..|+.++..+-
T Consensus 872 g~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 872 GQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 8888654332211112234444444433 44556666666666443
No 265
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.96 E-value=12 Score=43.64 Aligned_cols=264 Identities=16% Similarity=0.102 Sum_probs=141.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHh-hChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAK-RNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~-~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
.+.....++...++.+..+......++. .+...+..+.....+|.+-.+..+.+..++...+....+++---. +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t- 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT- 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence 4556666666666667776666666653 233344555666678888888888888888776666655542211 1110
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-hhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 513 (661)
-.-.++.++..+++..++++.+..+.+..+-...+ .........-++.++.+.....-+++......+..++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 12345666667777778888888876655433332 33344455677777777666666777777777777766544 2
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHH---HHHHHHHHHhcC
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRE---NAAAVLVHLCAG 590 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke---~A~~~L~~L~~~ 590 (661)
.+...-.-+.+...+.+....+++.|...+..++..-. ...- ....++.++.....++-..|. .++..|..++..
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ 590 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ 590 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc
Confidence 22322233334444444445666777766665554222 1111 112344444444333322232 233333333222
Q ss_pred CHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 591 DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 591 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+.....++.+..+..+..+.+|-.++..|.-+.+
T Consensus 591 ------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 591 ------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred ------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 12222345555555566666666666655555543
No 266
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.89 E-value=6.5 Score=46.06 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=116.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCChHHHHHHHHHHHhccCCCcchhHhhh
Q 006099 357 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKGSIVS 435 (661)
Q Consensus 357 ~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~ 435 (661)
+.+-..+.+.+|..+.+|+..+........ ........|.+-.++... ++.|..+...|+.+|..++.--..-..=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 455566678899999999999988875333 111111123344444433 334667777777777777654222122224
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC--chH
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG--NKG 513 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~--~~~ 513 (661)
.+.++.|+.-+...-..+++.+..++...+.. -.-...++.++..++++++..+......+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 66788888888777677777766666555431 1123567888899999999988876666555444332 122
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
.-.-.+.++.++....+.+.+++..|..+++.+-
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2223467888888888888999999888877554
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=0.28 Score=55.70 Aligned_cols=43 Identities=23% Similarity=0.524 Sum_probs=36.4
Q ss_pred CCCCccCcCCcccccCCee-cCCCccccHHHHHHHHHhCCCCCCCCCC
Q 006099 258 IPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQ 304 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~ 304 (661)
+-..-.|..|.-.+.-|++ ..|||.|.++|.+ ++.+.||.|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3344589999999999987 6999999999988 47889999965
No 268
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=87.70 E-value=12 Score=38.19 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHHHHHhhCCCChHHHHHHHHHHHhccCCC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE 427 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~ 427 (661)
++....+++.+...+.+.+..++....++-+.....|...++. ..+..|+.--.. .+++--++...|.....++
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH
Confidence 4677889999999999999999988888876555555444332 233333333111 2444444444444445555
Q ss_pred cchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch--hhhhhhc--CC-cHHHHHhhhcCCHHHHHHHHHHH
Q 006099 428 DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN--KVTIGAS--GA-IPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 428 ~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~--g~-i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
.-.+.|..+.-+.........++-++...|..+.-.+...+.. .+.+... .. .+.--.++.+++.-++..+..+|
T Consensus 157 ~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll 236 (342)
T KOG1566|consen 157 FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL 236 (342)
T ss_pred HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence 5566667788888888888877777777777777666544321 1122222 22 34466778889999999999999
Q ss_pred HHhhcccCchHHHH----HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 503 FNLCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 503 ~nL~~~~~~~~~iv----~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
+.+-....|...|. +...+..++.+|+++...++-.|-.+.+....+|.
T Consensus 237 g~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999888877554 34678889999999999999999999998877763
No 269
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.62 E-value=13 Score=40.40 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=116.9
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh-hcCC----HHHHHHHHHHHHHhhcccCc
Q 006099 438 AVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGT----QRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 438 ~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~----~~~~~~a~~aL~nL~~~~~~ 511 (661)
.+..++.+..+. ++..+..++.+++.|..--.... .-..++..+...+ ...+ .......+|+...|......
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 555666665444 56677777777777753211111 0012333333333 1222 23334445555555544332
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhh-------------HHHHHhCCChHHHHHHhhCCCHHHH
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEG-------------KAAIGAAEAVPVLVEVIGNGSPRNR 577 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~-------------~~~i~~~g~i~~Lv~lL~~~~~~~k 577 (661)
.. ...+..|+.+|.+ +.+...+...+..+... ++. |+.+.. ..+|.|++-.+..+...|
T Consensus 268 ~~----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 268 LA----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIK 340 (415)
T ss_pred hH----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhH
Confidence 22 2345567888875 55567777777766665 322 233322 367888888877777788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHH
Q 006099 578 ENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 636 (661)
Q Consensus 578 e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~ 636 (661)
..-..+|.++..+-|.....---..++|.|++-+..++..++..+..+|..+-...++.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 88999999999888855544434458999999999899999999999999888666443
No 270
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.51 Score=48.90 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=49.1
Q ss_pred ccCcCCccccc------CCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc-----CCCCccchhhhhhHHHH
Q 006099 262 FRCPISLELMK------DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT-----STAVTPNYVLRSLIAQW 324 (661)
Q Consensus 262 f~CpIc~~~m~------dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~-----~~~l~~n~~l~~~i~~~ 324 (661)
+.|-||.+.+. -|-++.||||+|..|+.+.+..+.-.||.||.+.. ...+..|+.+-..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45888887664 57788899999999999888777788999999843 23467777777777665
No 271
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.25 E-value=1.2 Score=43.73 Aligned_cols=79 Identities=25% Similarity=0.273 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcccCCchhhhhhhcCCcHH-------HHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHH--HcCCh
Q 006099 452 EARENAAATLFSLSVIDENKVTIGASGAIPP-------LVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAV--RAGVV 521 (661)
Q Consensus 452 e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~-------Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv--~~g~v 521 (661)
.-+..|..+|..|+..+.|...+...+-+.. |+++|. .+++-.++.|+..|.+|+..++...+.+ +.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4589999999999999999999988765544 444443 3577889999999999999988766544 68999
Q ss_pred HHHHhcccC
Q 006099 522 PTLMHLLTE 530 (661)
Q Consensus 522 ~~Lv~lL~~ 530 (661)
..|+.++.+
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999965
No 272
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.14 E-value=0.42 Score=47.87 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=36.2
Q ss_pred CCCccCcCCcccccC---CeecCCCccccHHHHHHHHHhCC--CCCCCCC
Q 006099 259 PDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGH--RTCPKTQ 303 (661)
Q Consensus 259 p~~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~--~~cP~~~ 303 (661)
..-|.||+..+.-.+ |+.+.|||..-..+..+.-+.|. +.||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 345899999987763 88899999999998877666554 7899994
No 273
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.10 E-value=27 Score=34.75 Aligned_cols=136 Identities=24% Similarity=0.221 Sum_probs=84.4
Q ss_pred HHHHHH-hhCCCChHHHHHHHHHHHhccCCC-cchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh
Q 006099 398 IPLLVG-LLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 475 (661)
Q Consensus 398 i~~Lv~-lL~s~~~~i~~~A~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 475 (661)
+|.|+. +-+..+++.+...+.+|..++.+. .+... ++..|..+...+..+.+..+.+.+..+-..++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 455555 445578999999999999998876 33222 34556666666666665566666666543322 111
Q ss_pred hcCCcHHHHHhh--------hcC--CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcc-cCCCccHHHHHHHHHH
Q 006099 476 ASGAIPPLVTLL--------SEG--TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL-TEPGGGMVDEALAILA 544 (661)
Q Consensus 476 ~~g~i~~Lv~lL--------~~~--~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-~~~~~~~~~~al~~L~ 544 (661)
+.+..++..+ .++ ..+.....+.++..+|...+++ ....++.+..+| .+.++.++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3334333331 111 2233444456788888776662 234677788888 6777888889999999
Q ss_pred Hhc
Q 006099 545 ILS 547 (661)
Q Consensus 545 ~L~ 547 (661)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 999
No 274
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=19 Score=39.09 Aligned_cols=226 Identities=14% Similarity=0.052 Sum_probs=126.0
Q ss_pred hCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhh-cCCcHH
Q 006099 405 LSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGA-SGAIPP 482 (661)
Q Consensus 405 L~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~ 482 (661)
.++++..++..|+..|.|.+.....+..-...-.+..++.-|.++ +.++.-.+..+|..+...-.++....- -.+.-.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 345677889999999999987644443333445666777766655 678888888888776543222221100 133345
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH--H--cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH-
Q 006099 483 LVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV--R--AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG- 557 (661)
Q Consensus 483 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv--~--~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~- 557 (661)
+..+.++.+++.+..|..++..|+.......++. + .+...+++-.|.++++.+ ..|++.....|.-.-.+++..
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l~rke~~~ 425 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNLVRKELYH 425 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchhHHHHHHH
Confidence 6667778889999999999998888766655433 2 233344555555555543 334444444443322222211
Q ss_pred -----------------hC------CChHHHHHHhhC--------CCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHH
Q 006099 558 -----------------AA------EAVPVLVEVIGN--------GSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMG 605 (661)
Q Consensus 558 -----------------~~------g~i~~Lv~lL~~--------~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~ 605 (661)
+. ...|.++.++.+ .-+.+++.|+..-.+.--+. +..+...-..-...
T Consensus 426 ~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~ 505 (533)
T KOG2032|consen 426 LFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRS 505 (533)
T ss_pred HHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 00 011222222211 11344444443333332221 22333333333566
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 606 PLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 606 ~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.|..+...+-+++++.|..++..+..
T Consensus 506 ~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 506 SLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHccCCCchhHHHHHHHhhhHhh
Confidence 77777788889999998888877653
No 275
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.58 E-value=3.2 Score=49.25 Aligned_cols=140 Identities=22% Similarity=0.190 Sum_probs=106.3
Q ss_pred CHHHHHHhhCC----CChHHHHHHHHHHHhccC-CCcchhHhhhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCch
Q 006099 397 AIPLLVGLLST----PDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDEN 470 (661)
Q Consensus 397 ~i~~Lv~lL~s----~~~~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~ 470 (661)
+.|.++...+. +|+++|..|.-+|+.+.. +.+.. ...++.++.++. ++++.+|.+++.+++.|+..-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 67888887754 589999999999988743 32222 235788999997 56899999999999998865433
Q ss_pred hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 471 KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 471 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
-. .-.-+.|...|.+.++.+++.|+.+|.+|..++-.+ -.|-++.+..+|.+++.++.+-|=.....|+..
T Consensus 995 li----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 LI----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred cc----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 11 123467788889999999999999999998875322 368999999999999999888887666666653
No 276
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.50 E-value=0.7 Score=49.33 Aligned_cols=181 Identities=18% Similarity=0.081 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhccCCCcchhHh-hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC----Cchhhhhhhc---CCcH
Q 006099 410 SRTQEHAVTALLNLSICEDNKGSI-VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI----DENKVTIGAS---GAIP 481 (661)
Q Consensus 410 ~~i~~~A~~~L~nLs~~~~~k~~i-~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~----~~~~~~i~~~---g~i~ 481 (661)
.-++..|++++.-+..+...+... .-..+...+...|.+.....++.++|++.|++.. -++.....+. --+.
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 335556777777666676655443 3566777788888777778899999999998632 1111101000 1122
Q ss_pred HHHHhhh---cCCHHHHHHHHHHHHHhhcccCchH----HHHHcCChHHHHhc-ccCCCccHHHHHHHHHHHhcCChhhH
Q 006099 482 PLVTLLS---EGTQRGKKDAATALFNLCIYQGNKG----KAVRAGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 482 ~Lv~lL~---~~~~~~~~~a~~aL~nL~~~~~~~~----~iv~~g~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~ 553 (661)
.++.... -...+++.+|..+|.|+...-+... ..+..|.+..+..- .......++=+++.++.||-.++...
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 2222221 1246788999999999986533111 12223333333332 23356678889999999999988653
Q ss_pred HH-H-HhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcC
Q 006099 554 AA-I-GAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 554 ~~-i-~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~ 590 (661)
-. + ....+++.|..++.+ .+-++|.+|+.+|..-...
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 11 1 222367788888764 5678899999998776543
No 277
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.16 E-value=2.5 Score=40.83 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-----CCccHHHHHHHHHHHhcCChh--hHHHHHhCCChHHHH
Q 006099 494 GKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPE--GKAAIGAAEAVPVLV 566 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~--~~~~i~~~g~i~~Lv 566 (661)
-..+|+..|..++++++.|..++++.+.--|..+|.. +-..++-.++++++.|..+++ .-..+..+.++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3467888899999999999988887766556666643 234567789999999988764 335566779999999
Q ss_pred HHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 567 EVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 567 ~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
+++..++.-.|.-|+.++..+..++.
T Consensus 196 rIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccch
Confidence 99999998889999988888766554
No 278
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.75 E-value=19 Score=40.98 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=49.5
Q ss_pred CChHHHHhc-ccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCH
Q 006099 519 GVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 519 g~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
++|..|+.. .++.+.+++..|+-+|+-++..+. ..+|..+.+|. +-+|.+|--|+.+|.--|.+++
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 467777777 566888999999998885544321 34667777775 5689999999999999888765
No 279
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.70 E-value=0.28 Score=47.14 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=35.6
Q ss_pred CCccCcCCc-ccccCCe--e--cC-CCccccHHHHHHHHHhCCCCCC--CCCCCC
Q 006099 260 DDFRCPISL-ELMKDPV--I--VS-TGQTYERSCIEKWLEAGHRTCP--KTQQTL 306 (661)
Q Consensus 260 ~~f~CpIc~-~~m~dPv--~--~~-cg~t~~r~~I~~w~~~~~~~cP--~~~~~l 306 (661)
.+-.||+|. +.+-+|= + -| |-|..|-+|..+.|..|...|| -|++.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 345899998 3445552 2 24 9999999999999999999999 465433
No 280
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=0.39 Score=52.59 Aligned_cols=38 Identities=29% Similarity=0.600 Sum_probs=31.2
Q ss_pred CCccCcCCcccc----cCCeecCCCccccHHHHHHHHHhCCCCCC
Q 006099 260 DDFRCPISLELM----KDPVIVSTGQTYERSCIEKWLEAGHRTCP 300 (661)
Q Consensus 260 ~~f~CpIc~~~m----~dPv~~~cg~t~~r~~I~~w~~~~~~~cP 300 (661)
+-+.|+||...+ ..||.+-||||.|+.|.+...+ .+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 457899997666 3799999999999999998754 5677
No 281
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.17 E-value=16 Score=41.84 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=107.6
Q ss_pred hHHHHHHHccCCHHHHHHHH-HHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH
Q 006099 439 VPSIVHVLRIGSMEARENAA-ATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR 517 (661)
Q Consensus 439 i~~Lv~lL~~~~~e~~~~a~-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~ 517 (661)
-.-|..+|++.....+..|. +++..++...+ .+..+|..|+.+.+.+.++++..-.-|..-+....+-.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA---- 106 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA---- 106 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----
Confidence 34588889887555555555 44555554443 34568899999999999999877666555554443322
Q ss_pred cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006099 518 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAE 597 (661)
Q Consensus 518 ~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~ 597 (661)
.=-|..+-+-|.++++.++..|+++|..+-.. ++..-++-.+-+...+.++-+|..|+.++-.|-.-+++....
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 11245566778889999999999888754321 111111223333445678888999988888888777655543
Q ss_pred HHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 598 AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 598 ~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+ +..+-.++.+.++.+.-.|+.+...++
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 3 334445566666666666666655444
No 282
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.35 E-value=1 Score=39.54 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=41.5
Q ss_pred CCccCcCCcccccCCeec----CCCccccHHHHHHHHH--hCCCCCCCCCCCCcCCC
Q 006099 260 DDFRCPISLELMKDPVIV----STGQTYERSCIEKWLE--AGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~----~cg~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~ 310 (661)
.-+.|-||.+.-.|+..+ .||...|..|.-..|. .-++.||.|+.++....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 468899999999988776 4899999999988776 35589999988776443
No 283
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.88 E-value=61 Score=34.09 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=109.5
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccC-CC-cchhHhhh--CCChHHHHHHHccC----C---------HHHHHHHHHH
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSI-CE-DNKGSIVS--SGAVPSIVHVLRIG----S---------MEARENAAAT 460 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~-~~k~~i~~--~g~i~~Lv~lL~~~----~---------~e~~~~a~~~ 460 (661)
+..+.+.|++....+...++..|..++. +. .....+.. .-..+.+..++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888999888888899999999977 44 22333332 23444566666321 1 1677777776
Q ss_pred HHHcccCC--chhhhhhh-cCCcHHHHHhhhcCCHHHHHHHHHHHHH-hhcccC----chHHHHHcCChHHHHhcccCCC
Q 006099 461 LFSLSVID--ENKVTIGA-SGAIPPLVTLLSEGTQRGKKDAATALFN-LCIYQG----NKGKAVRAGVVPTLMHLLTEPG 532 (661)
Q Consensus 461 L~~Ls~~~--~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~----~~~~iv~~g~v~~Lv~lL~~~~ 532 (661)
+..+.... ..+..+.. .+.+..+.+-+..+++++....+.+|.. +..+.. .|..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 66655443 34555554 4789999999999889999999999885 443332 3445667778899999777766
Q ss_pred c----cHHHHHHHHHHHhcCChhhH
Q 006099 533 G----GMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 533 ~----~~~~~al~~L~~L~~~~~~~ 553 (661)
+ .+.+.+-.+|..+|.++..-
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 88899999999999876543
No 284
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=83.72 E-value=19 Score=41.03 Aligned_cols=133 Identities=17% Similarity=0.086 Sum_probs=93.3
Q ss_pred cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhccc-CCCccHHHHHHHHHHHhcCChhhHHH
Q 006099 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLT-EPGGGMVDEALAILAILSSHPEGKAA 555 (661)
Q Consensus 477 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~~~~~~ 555 (661)
..++|.|..-+++.+..++..++..+...+..-+ ...+..-++|.+-++.. ..+..++..++.+++.+.. .
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------R 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------H
Confidence 3456778888888889999999999988876655 55667778888887753 3677888899999998882 2
Q ss_pred HHhCCChH---HHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHH
Q 006099 556 IGAAEAVP---VLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRG 618 (661)
Q Consensus 556 i~~~g~i~---~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 618 (661)
+-...+++ .+..-.+..+|.+....+.+..++....+.. .++....++|.++-+...+.-..
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccH
Confidence 22223344 4444445667888777777776665543322 56666789999999988876333
No 285
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=67 Score=38.07 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=86.4
Q ss_pred hHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHhh---ChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHh
Q 006099 354 TKIEILLCKLTS--------GSPEDQRSAAGEIRLLAKR---NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN 422 (661)
Q Consensus 354 ~~i~~Lv~~L~s--------~~~~~~~~Al~~L~~L~~~---~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~n 422 (661)
+.++++++.+.+ .++.....|+..++.++.- ... -....+.-.++.++..++++---.|..||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 566777777762 3455566677777776521 112 1233344456777778888888899999999999
Q ss_pred cc-CCCcchhHhhhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCc-hhhhhhhc--CCcHHHHHhhhcCC
Q 006099 423 LS-ICEDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDE-NKVTIGAS--GAIPPLVTLLSEGT 491 (661)
Q Consensus 423 Ls-~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~--g~i~~Lv~lL~~~~ 491 (661)
++ .+=.+... -..+++.....|. +....++..|+-+|..+-.+.+ ...++... +.++.|+.+.+.-+
T Consensus 489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 98 33222222 2445677777777 4466788888888888776654 44555544 66667777766543
No 286
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.39 E-value=24 Score=41.13 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=119.7
Q ss_pred HHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCChH--HHHHHHccCCH-H
Q 006099 377 EIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVP--SIVHVLRIGSM-E 452 (661)
Q Consensus 377 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~--~Lv~lL~~~~~-e 452 (661)
.|.+....++.+...+.+.|++..+...++. ...+++..++..|.|++...+++........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888898999999999999999999999986 567889999999999998766655544322222 33334444443 7
Q ss_pred HHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHH-hhcccCchHHHHHcCChHH-HHhcccC
Q 006099 453 ARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN-LCIYQGNKGKAVRAGVVPT-LMHLLTE 530 (661)
Q Consensus 453 ~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~~~~~iv~~g~v~~-Lv~lL~~ 530 (661)
.-..|+.+|+.+..+.+. ....+. +..+...+.. ..........++....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~---------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF---------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc---------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 778888888887765443 111111 1112211111 1222222222332233333 4445533
Q ss_pred -CCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHH
Q 006099 531 -PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVH 586 (661)
Q Consensus 531 -~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~ 586 (661)
..+..+..|+.++.++... ++....+...|+++.+..+-.. ....+++.+..++.+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 5677889999999988875 4666667777888877665432 234556666555443
No 287
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=29 Score=39.92 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=51.8
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhh
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV 472 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~ 472 (661)
..+.+=++|++....+...|..++.+|..-. -..+ ..++..+--+|.+...-+|-.|.++|..++...+...
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 4566666777888888888999998886421 1111 1267777778888888899999999999987665443
No 288
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.36 E-value=8.4 Score=35.71 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=85.8
Q ss_pred CCcHHHHHhhhc--CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHH
Q 006099 478 GAIPPLVTLLSE--GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKA 554 (661)
Q Consensus 478 g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~ 554 (661)
..+..++..|.. .+++++..+..++..+- +..+....+ -+-.-+-.++...+.+-...++.++..|--. ++...
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345566666664 46678888888887773 222222211 1112223333444444556677777666443 44444
Q ss_pred HH-HhCCChHHHHHHhh--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChH-HHHHHHHHH
Q 006099 555 AI-GAAEAVPVLVEVIG--NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDR-GKRKAAQLL 626 (661)
Q Consensus 555 ~i-~~~g~i~~Lv~lL~--~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~-~k~~A~~lL 626 (661)
.+ ...|.++.++.++. ..+...+..++.+|..=|.. +.+...+...+++.|..+..++ ++. +|-.|+-.|
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 44 56688999999998 66777788888888877764 3444444556789999999654 454 565555443
No 289
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.15 E-value=10 Score=44.11 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=123.3
Q ss_pred HHHhccCC-CcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcH--HHHHhhhcCCH-H
Q 006099 419 ALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIP--PLVTLLSEGTQ-R 493 (661)
Q Consensus 419 ~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~-~ 493 (661)
+|++...+ +++...+.+.|+...+...++.- ..+....+...+.+++...+++........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 67777654 67788899999999999999865 57889999999999998876665554443333 33333333333 6
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHH-HhcCChhhHHHHHhCCChHH-HHHHhh-
Q 006099 494 GKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILA-ILSSHPEGKAAIGAAEAVPV-LVEVIG- 570 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~-~L~~~~~~~~~i~~~g~i~~-Lv~lL~- 570 (661)
.-..|+.+|+.+..+.+.. . ...-.+.+...+. +....+.....+.....+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~---~---------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---T---------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---c---------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 6678888888887765441 1 1111122222222 22233322222222223333 555555
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHH
Q 006099 571 NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLE 627 (661)
Q Consensus 571 ~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~ 627 (661)
+..+..+..|++++.+++...++++..+.+.|+++.+..+.... ...++..+...+.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999999999998886543 4455555555543
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.90 E-value=7.3 Score=35.46 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|.++++.+|..|+..|..+.+. +......+.+.+++..|+.++.. .+..++..++..+.+.+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999875 35566778888999999999974 578899999888887764
No 291
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.54 E-value=41 Score=36.43 Aligned_cols=145 Identities=13% Similarity=0.031 Sum_probs=91.0
Q ss_pred cHHHHHhhhc-CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHH-HHHHHhcCChhhHHHHH
Q 006099 480 IPPLVTLLSE-GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEAL-AILAILSSHPEGKAAIG 557 (661)
Q Consensus 480 i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al-~~L~~L~~~~~~~~~i~ 557 (661)
+..+++.|.+ .+...++.|++.|..++.+...+-.=...-+|..+++.-.+..+++...|. .++..++.+...+
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---- 406 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---- 406 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence 4566777776 677888999999999998766553222233555666665565555555444 3444555554332
Q ss_pred hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 558 AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 558 ~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.|..+..++.+.+...--.++..+..++..-+..--.-+-..+.|.+++-..+.+..+|+.|+.+|-.|..
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 33344444444333333344556666766543332233445789999999999999999999999887764
No 292
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.48 E-value=12 Score=38.05 Aligned_cols=145 Identities=19% Similarity=0.103 Sum_probs=91.3
Q ss_pred cHHHHHhhhc----CCHHHHHHHHHHHHHhhcccCchHHHHHc-C-ChHHHHhcccCC----CccHHHHHHHHHHHhcCC
Q 006099 480 IPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRA-G-VVPTLMHLLTEP----GGGMVDEALAILAILSSH 549 (661)
Q Consensus 480 i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~iv~~-g-~v~~Lv~lL~~~----~~~~~~~al~~L~~L~~~ 549 (661)
...+..++.. ..+..+..++++++|+..+...+..+... + .+...+..+... +..++..+..++.|++..
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3444444433 35677889999999999999999887743 3 344444444332 677777788888898753
Q ss_pred hhhHH--HHHhCCChHHHHHHhh-C-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHH
Q 006099 550 PEGKA--AIGAAEAVPVLVEVIG-N-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQ 624 (661)
Q Consensus 550 ~~~~~--~i~~~g~i~~Lv~lL~-~-~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~ 624 (661)
-.... .-.....+..+.+.+. . .+++....++.+|++|+..++.........|+...+..... ...+++++.+..
T Consensus 188 ~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 188 LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 21110 0000113455555333 2 57889999999999999877666665555566655555543 447777777654
No 293
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.47 E-value=57 Score=33.08 Aligned_cols=219 Identities=13% Similarity=0.082 Sum_probs=123.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhh
Q 006099 400 LLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGA 476 (661)
Q Consensus 400 ~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~ 476 (661)
.|-..|.++|..+|..|+..|..+... +... ....-+..|+.++.+. +......++..+..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 345678889999999999988876443 2111 2233356666666442 4455555566665555332211111 1
Q ss_pred cCCcHHHHHhhh--cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhH
Q 006099 477 SGAIPPLVTLLS--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 477 ~g~i~~Lv~lL~--~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~ 553 (661)
...+..+.+-.. .-....+..+...|..|..+......-...+.+..+++.+.. .||+....+..++..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 112222222111 113456677777888777654322222234577778888865 6777777777766655443221
Q ss_pred HHHHhCCChHHHHHHhh-------C---CCH--HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHH
Q 006099 554 AAIGAAEAVPVLVEVIG-------N---GSP--RNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRK 621 (661)
Q Consensus 554 ~~i~~~g~i~~Lv~lL~-------~---~~~--~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 621 (661)
......+.+.+. . ++| -+++.-...|.+.-..++..... ++|.|++=+.++.+.+|.-
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~-----~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF-----AFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH-----HHHHHHHHHcCCCcHHHHH
Confidence 223334444432 1 122 23555555555544444544433 6889999999999999999
Q ss_pred HHHHHHHHHhhH
Q 006099 622 AAQLLERMSRFI 633 (661)
Q Consensus 622 A~~lL~~L~~~~ 633 (661)
+..+|.......
T Consensus 228 ~L~tL~~c~~~y 239 (262)
T PF14500_consen 228 SLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999998877654
No 294
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.37 E-value=15 Score=44.01 Aligned_cols=148 Identities=21% Similarity=0.210 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHH
Q 006099 366 GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVH 444 (661)
Q Consensus 366 ~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~ 444 (661)
++|+.|..|.-+|..+.--+.+.. ....|.|+..+. ++++.++.+++.+++.|+..-.|- -.-.-+.+.+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpnl----ie~~T~~Ly~ 1005 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL----IEPWTEHLYR 1005 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhcccc----cchhhHHHHH
Confidence 679999999999988764333322 234799999997 789999999999999887542221 0112345667
Q ss_pred HHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHH
Q 006099 445 VLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTL 524 (661)
Q Consensus 445 lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~L 524 (661)
.|.+.++.+|+.|..+|.+|-..+- |--.|.+.-+...|.+++.+++..|=.....|+...+.. .+.+|-+
T Consensus 1006 rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~i-----ynlLPdi 1076 (1251)
T KOG0414|consen 1006 RLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTI-----YNLLPDI 1076 (1251)
T ss_pred HhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccch-----hhhchHH
Confidence 7788899999999999999976543 333488999999999999998887776777776655322 2355556
Q ss_pred HhcccCC
Q 006099 525 MHLLTEP 531 (661)
Q Consensus 525 v~lL~~~ 531 (661)
+.-|.++
T Consensus 1077 l~~Ls~~ 1083 (1251)
T KOG0414|consen 1077 LSRLSNG 1083 (1251)
T ss_pred HHhhccC
Confidence 6666554
No 295
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.31 E-value=17 Score=42.67 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=113.7
Q ss_pred ccCCHHHHHHHHHHHHHcccCCchhhhhhhc---CCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChH
Q 006099 447 RIGSMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVP 522 (661)
Q Consensus 447 ~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~ 522 (661)
.+.++.-|..|+.-+........ ..... |-+-.++.... +.+..+...|+..|..|+..-..-..=...++++
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p 339 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFP 339 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcc
Confidence 34455666666666555443322 12222 33333333332 3456677778888877775433333333457888
Q ss_pred HHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHc
Q 006099 523 TLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKEL 601 (661)
Q Consensus 523 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~ 601 (661)
.++.-+......+++.++.++-..+..- .-....+.+.+.+++++|..+......+.......+ .....---.
T Consensus 340 ~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 340 SLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred hHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 8999998888888888888877555411 112356778888999999999987766666554433 222222233
Q ss_pred CCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 602 GVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 602 g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
++++.++....+.+..+|..|..++..+-+..
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 57888888888889999999999888766543
No 296
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.27 E-value=26 Score=41.42 Aligned_cols=252 Identities=19% Similarity=0.217 Sum_probs=147.1
Q ss_pred HHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCC----
Q 006099 375 AGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGS---- 450 (661)
Q Consensus 375 l~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~---- 450 (661)
..+|-.+.+.+.+|...+.++.++..++.++-+ .+-+...+.++.-|-..+..+ +...-+-.++..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 346777788899999999999988888888743 344444444444433221110 11233456777776631
Q ss_pred --------HHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhc----------CCHHHHHHHHHHHHHh-----h
Q 006099 451 --------MEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSE----------GTQRGKKDAATALFNL-----C 506 (661)
Q Consensus 451 --------~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~aL~nL-----~ 506 (661)
..+......+++.+...+ ..+...++++++..|...|.. ++.-.-..-...|+.+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 124455566777766443 567788888888888887752 1211111222233322 3
Q ss_pred cccCchHHH-------------HHcC---------ChHHHHhc----ccCCCccHHHHHHHHHHHhcC------Ch----
Q 006099 507 IYQGNKGKA-------------VRAG---------VVPTLMHL----LTEPGGGMVDEALAILAILSS------HP---- 550 (661)
Q Consensus 507 ~~~~~~~~i-------------v~~g---------~v~~Lv~l----L~~~~~~~~~~al~~L~~L~~------~~---- 550 (661)
.++.|+..+ .+.| .|..|..+ +..+...--..|+.-+..+-. .|
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 344454321 1223 11222111 111111111223333322211 12
Q ss_pred -hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh---cCChHHHHHHHHHH
Q 006099 551 -EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ---NGTDRGKRKAAQLL 626 (661)
Q Consensus 551 -~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~k~~A~~lL 626 (661)
..++.|...|++..|+..+-...|..+..-...|..++..+|.+....-..|.+..|++++. +|+...--.|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 23577888899999999888888999999999999999988877777777888988888873 56666656666666
Q ss_pred HHHHh
Q 006099 627 ERMSR 631 (661)
Q Consensus 627 ~~L~~ 631 (661)
..|+.
T Consensus 978 emLga 982 (2799)
T KOG1788|consen 978 EMLGA 982 (2799)
T ss_pred HHHhh
Confidence 65553
No 297
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.27 E-value=9.9 Score=42.50 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=77.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhC
Q 006099 481 PPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAA 559 (661)
Q Consensus 481 ~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~ 559 (661)
..++...+ ++...++.|+..|.....+-+.-. ..++..++++..+.+..++..|+.-|-.+|... +....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 34444444 567788888888777665544322 235667888888888889999999999888763 443333
Q ss_pred CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh---cCChHHHHHHHHHH
Q 006099 560 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ---NGTDRGKRKAAQLL 626 (661)
Q Consensus 560 g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~k~~A~~lL 626 (661)
+..|+.+|.+.++.....+-.+|..|...++.. .+..|..-+. ++++.+|+++..-|
T Consensus 98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFL 157 (556)
T ss_dssp --HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHH
T ss_pred --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 457888888888777777777777777666532 2334444443 56777777776655
No 298
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=82.15 E-value=0.73 Score=44.32 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=41.5
Q ss_pred CccCcCCcccccCCee-cCCCccccHHHHHHHHH-hCCCCCCC--CCCCCcCCCCccchhh
Q 006099 261 DFRCPISLELMKDPVI-VSTGQTYERSCIEKWLE-AGHRTCPK--TQQTLTSTAVTPNYVL 317 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~-~~~~~cP~--~~~~l~~~~l~~n~~l 317 (661)
+.+|||+.....-|++ ..|+|.|++..|.+.++ .-...||. |.+...-..+..++.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 3689999999999986 48999999999999998 22356785 6555554444444333
No 299
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.97 E-value=9.2 Score=30.39 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006099 536 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELG 602 (661)
Q Consensus 536 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g 602 (661)
.+.|+.++++++..+.+...+.+.++++.++++... +...+|--|..+|..++.. .+.+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 578999999999999999888888999999999974 5578899999999888765 45565555555
No 300
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.19 E-value=8.5 Score=44.73 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=98.2
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH-H-cCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHH
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-R-AGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKA 554 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv-~-~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~ 554 (661)
..+|.|++.+.+.+...+.+=+.+|.++..+-+. ..+. + ....|.|++.|.-++..++-.++.++.-+... +.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 6778888888866667777778888887775444 2222 2 45788889999889999988899888755443 33223
Q ss_pred HHHhCCChHHHHHHhhCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHH
Q 006099 555 AIGAAEAVPVLVEVIGNGS---PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQ 624 (661)
Q Consensus 555 ~i~~~g~i~~Lv~lL~~~~---~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~ 624 (661)
.-++ -.+|.++.+-.+.+ ..+|+.|..+|..|...-|...-.-....++..|...+.+.---+|+.|..
T Consensus 946 ~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 946 EHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 3333 36777777766544 567999999999999855533333333456777777776665555666654
No 301
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.42 E-value=5.6 Score=46.11 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=95.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH--hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE--AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..++.|++...+.+..++.--+..|.+...+-|. ..+.. ....|.|++.|.-+|..+|..+..++.-+....+.-.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 4677888888766666666666777776654333 22222 3568899999999999999888887765543211100
Q ss_pred HhhhCCChHHHHHHHccCC---HHHHHHHHHHHHHccc-CCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHH
Q 006099 432 SIVSSGAVPSIVHVLRIGS---MEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATA 501 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~---~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 501 (661)
.-.-...++.++.+=.+.+ ..+|+.|..+|..|.. .+...-.-.+..++..|+..|++...-+++.|+.+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 0011234444444444443 6789999999999988 44444455556788999999988877788888765
No 302
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=1.2 Score=37.09 Aligned_cols=28 Identities=21% Similarity=0.700 Sum_probs=23.6
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 278 STGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 278 ~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
.|+|.|--.||.+|+. ....||.+.+.-
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCcce
Confidence 5899999999999999 456799987653
No 303
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=8.8 Score=39.15 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc---CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHc
Q 006099 442 IVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRA 518 (661)
Q Consensus 442 Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~ 518 (661)
.+..|.+.+++....++..+..|+..+. .+... ..|-.+++-+++....+-+.|+.++..+...-++...---.
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld 169 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELD 169 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666654432 22222 45556666667767778888999999888766555433222
Q ss_pred CChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 519 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 519 g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
+.+-.|+.--...+.-+++.|-.+|..+..+-... -+++.|...+++.+++++..++....+.
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 22222222222255678888999988777654322 2466777778888888888876555443
No 304
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.34 E-value=48 Score=33.56 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=103.5
Q ss_pred CChHHHHHHHccC--CHHHHHHHHHHHHHcccCCch--------hhhhhhcCCcHHHHHhhhcCC----HHHHHHHHHHH
Q 006099 437 GAVPSIVHVLRIG--SMEARENAAATLFSLSVIDEN--------KVTIGASGAIPPLVTLLSEGT----QRGKKDAATAL 502 (661)
Q Consensus 437 g~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~--------~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL 502 (661)
|..+.+..++-.| +....+.+..+|..|...++. +-.+.-.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6677777777665 456677777777777654332 222222366777777777766 23445677888
Q ss_pred HHhhcccCchHHHHHcCChHHHHhcccC----CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHH
Q 006099 503 FNLCIYQGNKGKAVRAGVVPTLMHLLTE----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRE 578 (661)
Q Consensus 503 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke 578 (661)
..+|...+ .+.+..++..+.. ...+....++..|..-.. |+ .+...+..|+++|.++.+..|.
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 88884321 1223333333322 223344444444443221 11 1224567899999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 579 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 579 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
....+|..+-..-+-... ...+++.+|..+++++ .-..|..+|...
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eAL~VLd~~ 252 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc---cHHHHHHHHHHH
Confidence 999999998765432222 4455788999988765 233555555544
No 305
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.87 E-value=17 Score=30.66 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=55.2
Q ss_pred HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 517 RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 517 ~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
..+.+..|+..+..+.....+.++..|..|..++.+...+.+-|++..|.++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45677889999988777789999999999999999999999999999877776666676665554444
No 306
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.86 E-value=0.28 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=31.1
Q ss_pred CccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 261 DFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
+..|.||++.-+|-|.++|||. -|-.|=. .-..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 6789999999999999999994 3444422 123799998754
No 307
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.79 E-value=1.6 Score=44.79 Aligned_cols=60 Identities=17% Similarity=0.383 Sum_probs=43.3
Q ss_pred CCCCCccCcCCcccccCCee-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHH
Q 006099 257 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 323 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~ 323 (661)
...+-+-||+|.+.|.-|+. -.-||.-|-.|=.+ -...||.|+.++.+. .++++..+++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCccccccccH---HHHHHHHHHHh
Confidence 34566889999999999964 34599999998643 345899999988732 45555555544
No 308
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.78 E-value=5.9 Score=33.11 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
.......+..|.++.+.+|-.++..|+.+..... ...+-..+.+..+...|+++|+-+--+|+..|..|+.
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3567788889999889999999999999987554 2222234567788888999999999999999988874
No 309
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.60 E-value=13 Score=33.43 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHhCCHHHHHHhhCC---CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD-NRVAIAEAGAIPLLVGLLST---PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~s---~~~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|+++++.+|..|+..|..+.+.... ....+....++..|+.++.. .+..++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999876544 55667777888889999975 478899999998888764
No 310
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=78.56 E-value=13 Score=33.98 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|.+.++.+|..|+..|..+.+... .....+....++..|++++.. .+..++..++..+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999987543 446677888999999999988 788999999988888764
No 311
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.49 E-value=27 Score=39.87 Aligned_cols=97 Identities=25% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCHHHHHHh-hCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhh
Q 006099 396 GAIPLLVGL-LSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVT 473 (661)
Q Consensus 396 g~i~~Lv~l-L~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~ 473 (661)
++|..|+.+ .++.|.++++.|+.+|+-++..+ ....+.++.+|... ++-+|.-++.+|.--|....++..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 345555555 44556777777777776654432 23345566666543 667777777777666655443333
Q ss_pred hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006099 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 506 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 506 (661)
|..|-.+..+...-+++.|+-++.-+.
T Consensus 626 ------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 626 ------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 233333334444455666666655543
No 312
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.35 E-value=1.5 Score=45.30 Aligned_cols=56 Identities=27% Similarity=0.494 Sum_probs=45.6
Q ss_pred CCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccch
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNY 315 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~ 315 (661)
+| ...|.+++.++.+||-+..|..|+-..|-.|+. -+.+-|.+++++....+++-.
T Consensus 38 LP-~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 38 LP-FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIKLK 93 (518)
T ss_pred CC-hhhceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCccccccceeee
Confidence 44 467999999999999999999999999999998 445668888877766665543
No 313
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=77.85 E-value=31 Score=36.66 Aligned_cols=103 Identities=10% Similarity=0.004 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-----ChHHHHHHHHHHHhccC-CCcchhH-hhhCCCh
Q 006099 367 SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-----DSRTQEHAVTALLNLSI-CEDNKGS-IVSSGAV 439 (661)
Q Consensus 367 ~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~i~~~A~~~L~nLs~-~~~~k~~-i~~~g~i 439 (661)
+..+..+|+++|.++..+++..+....+......+++.+... -..++..=+..|.-|.. ....|.. +.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 356777889999999998999999998888777777765431 11223333444444422 3344554 4488999
Q ss_pred HHHHHHHccC---------C---H---HHHHHHHHHHHHcccCCc
Q 006099 440 PSIVHVLRIG---------S---M---EARENAAATLFSLSVIDE 469 (661)
Q Consensus 440 ~~Lv~lL~~~---------~---~---e~~~~a~~~L~~Ls~~~~ 469 (661)
+.+...|.+. + + +....+..+++|+..+..
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 9999999631 1 1 233456677888876643
No 314
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=77.57 E-value=0.68 Score=55.10 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCCCccCcCCccccc-CCeecCCCccccHHHHHHHHHhCCCCCCCCC
Q 006099 257 VIPDDFRCPISLELMK-DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQ 303 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~-dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~ 303 (661)
++-+.+.|+||+++|+ ---+.-|||.||..|+..|.. .+..||+|.
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICK 1195 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchh
Confidence 4456679999999999 556788999999999999998 667899986
No 315
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.78 E-value=35 Score=38.80 Aligned_cols=105 Identities=17% Similarity=0.077 Sum_probs=73.0
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHH
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA 515 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i 515 (661)
+|.+..+++...+.+..+|-.++.+|..++........-+-.+....+...+.+..+.++..|+.+|..+-..+.+-.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc--
Confidence 445555555556668899999999999998643333334445677788888888889999999999999975433221
Q ss_pred HHcCChHHHHhcccC-CCccHHHHHHHHHH
Q 006099 516 VRAGVVPTLMHLLTE-PGGGMVDEALAILA 544 (661)
Q Consensus 516 v~~g~v~~Lv~lL~~-~~~~~~~~al~~L~ 544 (661)
..++..++.++.. ++++++..|+..+.
T Consensus 162 --~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 162 --CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred --ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2344567777754 78888887765443
No 316
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.68 E-value=14 Score=33.13 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCCC--hHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTPD--SRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s~~--~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|.++++.+|..|+..|..+.+. .......+...+++..|+.+++... +.++..++..+.+.+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999876 4556677888899999999998742 3488888888877653
No 317
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=76.61 E-value=44 Score=38.01 Aligned_cols=261 Identities=13% Similarity=0.124 Sum_probs=157.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCC
Q 006099 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGA 438 (661)
Q Consensus 359 Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~ 438 (661)
++..+.-.+.+++.+-...|.... +.-...++..-.+|.|+..+..++ .-...+..|..+..+-.... ...+.
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 344445566677766666665532 233445566667888888887766 22233444444443311111 56788
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHc
Q 006099 439 VPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRA 518 (661)
Q Consensus 439 i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~ 518 (661)
++.|+.++...+..+|-.-+.-+.... +..-..+.+...+|.+..-+.+.++-+++..+..+..|+.-=..+ .+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 999999999988777654433332221 223456677789999999999999999999998888876533222 1122
Q ss_pred CChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCCh-HHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006099 519 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAV-PVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAE 597 (661)
Q Consensus 519 g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i-~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~ 597 (661)
..+..+.++-.+.+..++....-+|..++.+-.. .++.+++ ....+-+++.-+..|..++..++..+..-+. .
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~ 481 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---S 481 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---h
Confidence 2233333333345566666666666665554321 1233332 3334456665566788888888877664331 1
Q ss_pred HHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHH
Q 006099 598 AKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 636 (661)
Q Consensus 598 ~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~ 636 (661)
-+...+.|.+.-+..+.+.-++..|-..++......+..
T Consensus 482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred hhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 122346777777777888888888888887776555444
No 318
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.14 E-value=46 Score=38.28 Aligned_cols=166 Identities=20% Similarity=0.164 Sum_probs=90.3
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCC--cchhHhhhCCChHHHHHHHcc----CCHHHHHHHHHHHHHcccCCc-
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICE--DNKGSIVSSGAVPSIVHVLRI----GSMEARENAAATLFSLSVIDE- 469 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~a~~~L~~Ls~~~~- 469 (661)
++..+..++.+......+ |...|..|.... ... ..+..+..+++. .++.++..|+-++..|...-.
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 466667777764433322 345555554321 122 234556666654 245677777766666643211
Q ss_pred ---------hhhhhhhcCCcHHHHHhhh----cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCC---Cc
Q 006099 470 ---------NKVTIGASGAIPPLVTLLS----EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP---GG 533 (661)
Q Consensus 470 ---------~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~ 533 (661)
.........+++.|...+. .++..-+..++.+|+|+-. ...++.|..++... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 1122333356777777776 3456777888999999964 24677888888664 45
Q ss_pred cHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC--CHHHHHHHHHHHHH
Q 006099 534 GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVH 586 (661)
Q Consensus 534 ~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~ 586 (661)
.++..|+.+|..++..... .+.+.++.++.+. ++++|..|+.+|..
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6677777777766443221 1345677777653 46777777655554
No 319
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=56 Score=39.07 Aligned_cols=223 Identities=16% Similarity=0.069 Sum_probs=127.5
Q ss_pred hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhh
Q 006099 395 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVT 473 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~ 473 (661)
.+++..|+..|++.|..++-.|+..++.+..... .-....++..++.++... +...-..++-+|..|+...--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3567888899999999999999999999876533 112345677777766554 355566777888887643210000
Q ss_pred hhhcCCcHHHHHhhhcC--------CHHHHHHHHHHHHHhhcccCch--HHHHHcCChHHHHhcccCCCccHHHHHHHHH
Q 006099 474 IGASGAIPPLVTLLSEG--------TQRGKKDAATALFNLCIYQGNK--GKAVRAGVVPTLMHLLTEPGGGMVDEALAIL 543 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~--------~~~~~~~a~~aL~nL~~~~~~~--~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L 543 (661)
. -..++|.++.-|.-. ...++..||.+++.++...+.. .-++..=+-..|...+.+++..++..|.+++
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 0 013445555544321 3467888888888887654332 1222211222344455677788888888887
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHhhCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHh-hhcCChHHH
Q 006099 544 AILSSHPEGKAAIGAAEAVPVLVEVIGNG---SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDL-AQNGTDRGK 619 (661)
Q Consensus 544 ~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~k 619 (661)
....+. .|-+|.=++++.+- +-..+.++-..|..-....+.++..+.+ .|+.- +.+=+...+
T Consensus 496 qE~VGR---------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 496 QENVGR---------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHhcc---------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 644332 23333323333322 2223444443333333333444444333 23322 445589999
Q ss_pred HHHHHHHHHHHhhHHH
Q 006099 620 RKAAQLLERMSRFIEQ 635 (661)
Q Consensus 620 ~~A~~lL~~L~~~~~~ 635 (661)
+.|++.|..|+...++
T Consensus 562 elaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPK 577 (1133)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 9999999998876643
No 320
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.15 E-value=97 Score=32.57 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=109.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHh-hChhhHHHHHH-hCC-HHHHHHhhCCC-----C--------hHHHHHHHH
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAK-RNADNRVAIAE-AGA-IPLLVGLLSTP-----D--------SRTQEHAVT 418 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~-~~~~~r~~i~~-~g~-i~~Lv~lL~s~-----~--------~~i~~~A~~ 418 (661)
.++.+.+.|.+.....+..+++-|..+.. .+......+.. -++ .+.|.+++... + +.+|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36777778888888888888888888876 55455444444 343 45666666421 1 278888888
Q ss_pred HHHhccCC--CcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHH-cccCC----chhhhhhhcCCcHHHHHhhhcC
Q 006099 419 ALLNLSIC--EDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFS-LSVID----ENKVTIGASGAIPPLVTLLSEG 490 (661)
Q Consensus 419 ~L~nLs~~--~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~-Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~ 490 (661)
.+..+... ...+..++ ..+.+..+.+-|..++.++......+|.. +..++ ..|..+....++..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 77776543 44566666 66778888888888888999988888874 43333 2355666778889999987766
Q ss_pred CH----HHHHHHHHHHHHhhcccC
Q 006099 491 TQ----RGKKDAATALFNLCIYQG 510 (661)
Q Consensus 491 ~~----~~~~~a~~aL~nL~~~~~ 510 (661)
++ .+...+-..|..+|.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 777888888888886554
No 321
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.10 E-value=17 Score=32.94 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC------CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s------~~~~i~~~A~~~L~nLs~ 425 (661)
...+..+.+.|.+.++.++..|+..|..+.+. .......++..+++.-|++++.. .+..++..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999988863 35566788888999999999963 467899888888776653
No 322
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.92 E-value=61 Score=37.02 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHH
Q 006099 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAI 556 (661)
Q Consensus 477 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i 556 (661)
.|.+..|++-..+.+..++..++..|.-|+........-+-.+....+..-+.+..+.++..|+.+|..+-..+..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 46667777777778889999999999999886555555666677778888888888999999999999887544210
Q ss_pred HhCCChHHHHHHhhC-CCHHHHHHHHHHH
Q 006099 557 GAAEAVPVLVEVIGN-GSPRNRENAAAVL 584 (661)
Q Consensus 557 ~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L 584 (661)
+..++..++.+++. +++++|..|+..+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12356677788874 6788888765433
No 323
>PRK14707 hypothetical protein; Provisional
Probab=74.78 E-value=2.8e+02 Score=36.34 Aligned_cols=274 Identities=15% Similarity=0.057 Sum_probs=138.6
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHh-ccCCCcchh
Q 006099 354 TKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLN-LSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~n-Ls~~~~~k~ 431 (661)
-.|..++..++. .+......|+..|.....+...-+..+-..|+...|-.+-+-.+...-.+|+..|.. ++.+..-+.
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 345555555543 222334445555554433344444444444544444445555666666666666654 444433333
Q ss_pred HhhhCCChHHHHHHHcc-CCHHHHHHHH-HHHHHcccCCchhhhhhhcCCcHHHHHhhhc--CCHHHHHHHHHHHHHhhc
Q 006099 432 SIVSSGAVPSIVHVLRI-GSMEARENAA-ATLFSLSVIDENKVTIGASGAIPPLVTLLSE--GTQRGKKDAATALFNLCI 507 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~-~~~e~~~~a~-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~ 507 (661)
.+ ..-.+...++-|.. .+..+...|+ .+-..|..+.+-+.. .+...+...++-|.. ++..+...|...-..|+.
T Consensus 285 al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 AL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 33 22233333444433 3444444444 444555543332322 222333334444432 234445545545556766
Q ss_pred ccCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHHH-HhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHH
Q 006099 508 YQGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILA-ILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLV 585 (661)
Q Consensus 508 ~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~-~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~ 585 (661)
.++-+..+- ..++...++-|+. ++......|...|+ .|..+++.+..+--.|+-..|=.+-+=++..+...|+..|.
T Consensus 363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 666555444 3345555555544 77776676666665 77777777777755554444333434455556666666666
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHH-HHHHHHHHHHH
Q 006099 586 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGK-RKAAQLLERMS 630 (661)
Q Consensus 586 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k-~~A~~lL~~L~ 630 (661)
--..++.+.++.+--.++...|-.+.+=++.++. ..|..+...|.
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 6555666666555545555555555555544444 44444444554
No 324
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.76 E-value=18 Score=33.68 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=75.9
Q ss_pred ChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH
Q 006099 438 AVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV 516 (661)
Q Consensus 438 ~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv 516 (661)
.++.+.++|+++ +..+|..+..+|+.|-..|+++-+....+. +.-. -.+.+...... .+.+....+ .-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~---~l~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDI---SLPMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhh---HHhhccCCC-chHHHH
Confidence 456788888877 689999999999999988887766433211 0000 00111111111 111111111 122233
Q ss_pred HcCChHHHHhcccCCCcc-HHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 517 RAGVVPTLMHLLTEPGGG-MVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 517 ~~g~v~~Lv~lL~~~~~~-~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
-..++..|++.|+++... -...++.++.++......+ ..+. ..++|.++..+++.++..+|.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344677888888774322 2223444444444222111 1111 13788899999877777788766555544
No 325
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.62 E-value=15 Score=34.26 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=76.2
Q ss_pred CHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh
Q 006099 397 AIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 475 (661)
Q Consensus 397 ~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 475 (661)
.++.|+++|+.+ +..+|..++++|+.|-.-+..+-.....+. +.-. -...+........ .....+ .......
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l-~~~~~~---~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISL-PMMGIS---PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHH-hhccCC---CchHHHH
Confidence 457788888875 689999999999999544333333211110 0000 0000111111111 111111 1112222
Q ss_pred hcCCcHHHHHhhhcCCH-HHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh
Q 006099 476 ASGAIPPLVTLLSEGTQ-RGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546 (661)
Q Consensus 476 ~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L 546 (661)
-..++..|+.+|++.+- .....++.++.++....+.+..-.=..++|.++..+...+...++..+.-|+.|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33467888888887753 233456677777765544443222245888888888875557777766666554
No 326
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=74.35 E-value=2 Score=43.21 Aligned_cols=43 Identities=30% Similarity=0.680 Sum_probs=33.4
Q ss_pred CccCcCCccccc----CCeecCCCccccHHHHHHHHHhCCCCCCCCCC
Q 006099 261 DFRCPISLELMK----DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQ 304 (661)
Q Consensus 261 ~f~CpIc~~~m~----dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~ 304 (661)
++-||||.+.+. +|...+|||+.-..|++.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 355999998764 56678999987766666666656 99999977
No 327
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.92 E-value=29 Score=39.55 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=92.3
Q ss_pred HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCchhh
Q 006099 394 EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKV 472 (661)
Q Consensus 394 ~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~ 472 (661)
...++|.|...+++.+..+|+.++..+...+..-+ ...+..-+++.|-.+.. ..+..++.+++.++..+. +...
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD 461 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLD 461 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHH
Confidence 44678999999999999999999999998876433 33445556777766643 346788899999998887 2111
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCcc
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGG 534 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~ 534 (661)
...-..-+.++.+-.+..++.+....+.+..++.....+...++...++|.++.+...+...
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 11112334445555556678888888888888877665544445567778877777654433
No 328
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.76 E-value=1.9e+02 Score=34.84 Aligned_cols=81 Identities=26% Similarity=0.209 Sum_probs=64.4
Q ss_pred CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhh---CCCHHHHHHHHHHHH
Q 006099 510 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIG---NGSPRNRENAAAVLV 585 (661)
Q Consensus 510 ~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~---~~~~~~ke~A~~~L~ 585 (661)
+.+.++..+|++..|++.+-...+.++-.-+..+..++... .+....-..|++..|++++. +++...-.+|..++.
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 34667889999999999988888888999999999888765 55555566799999999885 466666778888888
Q ss_pred HHhcC
Q 006099 586 HLCAG 590 (661)
Q Consensus 586 ~L~~~ 590 (661)
.||..
T Consensus 979 mLgay 983 (2799)
T KOG1788|consen 979 MLGAY 983 (2799)
T ss_pred HHhhc
Confidence 87754
No 329
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=73.73 E-value=56 Score=34.87 Aligned_cols=240 Identities=15% Similarity=0.084 Sum_probs=126.1
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-CHHHHHHHHH-HHHHcccCCchhhhh
Q 006099 398 IPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAA-TLFSLSVIDENKVTI 474 (661)
Q Consensus 398 i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~-~L~~Ls~~~~~~~~i 474 (661)
|..++.=|.+ ....+|..++--|..-+.++..+..+...|.+..++..+... +......++. +++-|+.+..+...+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 5566666663 356778888777888788888899999999999999999543 3324444444 445555544444444
Q ss_pred hhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcc---c------CCCccHHHHHHHHHH
Q 006099 475 GASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL---T------EPGGGMVDEALAILA 544 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL---~------~~~~~~~~~al~~L~ 544 (661)
...+....++.++... ........- .....+-.++. .+.+..+...+ . .....-+..|+.+|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 4556677778887711 000000000 00000000000 11111111111 0 112223344555555
Q ss_pred HhcC---------------ChhhHHHHHhCCChHHHHHHhhC----C-------C-----HHHHHHHHHHHHHHhcCCHH
Q 006099 545 ILSS---------------HPEGKAAIGAAEAVPVLVEVIGN----G-------S-----PRNRENAAAVLVHLCAGDQQ 593 (661)
Q Consensus 545 ~L~~---------------~~~~~~~i~~~g~i~~Lv~lL~~----~-------~-----~~~ke~A~~~L~~L~~~~~~ 593 (661)
.++. .+-.++++...|++..++.++.. . . -..-+.+..+|-+.+..+.+
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~ 255 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE 255 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 5531 12235666777889999988751 1 1 11234677888887766665
Q ss_pred HHHHHHHc--CCHHHHHH-hhhcCChHH---HHHHHHHHHHHHhhHHHHHHHHhhhh
Q 006099 594 YLAEAKEL--GVMGPLVD-LAQNGTDRG---KRKAAQLLERMSRFIEQQKQAQVQTE 644 (661)
Q Consensus 594 ~~~~~~~~--g~i~~L~~-ll~~~~~~~---k~~A~~lL~~L~~~~~~~~~~l~~~~ 644 (661)
+....... +..+.+.. ++..-.... ...+..++-|+...++.....++..+
T Consensus 256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 55444332 33333333 333323333 45677777777777755555555443
No 330
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=71.96 E-value=3.4 Score=36.70 Aligned_cols=45 Identities=18% Similarity=0.504 Sum_probs=33.4
Q ss_pred CccCcCCcccccC--Cee-cCCC------ccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 261 DFRCPISLELMKD--PVI-VSTG------QTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 261 ~f~CpIc~~~m~d--Pv~-~~cg------~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
...|.||.+-..+ -|+ ++|| +.||..|+.+|-+ .....|.-|..-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceE
Confidence 4569999988776 555 5777 4599999999964 566778765543
No 331
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.97 E-value=40 Score=36.72 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=91.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
..+..+....++++...+.-|+..|.+.+..-+.....-.. -.+..++.-|. ..+.+++-.|+.+|.-+...-.++..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 45666667777788888999999999998764443332222 23444555444 45788999999988877644333332
Q ss_pred hh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch--hhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006099 433 IV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN--KVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCI 507 (661)
Q Consensus 433 i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 507 (661)
.- --.+.-.+..+.++.++++|.+|..++..|+..-.. +....+. +...+++-.|.+.++.+. .||+.....+.
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 10 112333455677788899999999888888765432 2223321 444555555666665443 35555555443
No 332
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.78 E-value=29 Score=35.59 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
...+...+..|.+.+|+....++..|+.|+..+++...-... ..|..+++-+++....+-..|+.++..+...-.+ .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 467888999999999999999999999998766554333222 3567778888888888888999998888543222 1
Q ss_pred hhhCCChHHHHH-HHccC---CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006099 433 IVSSGAVPSIVH-VLRIG---SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLC 506 (661)
Q Consensus 433 i~~~g~i~~Lv~-lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 506 (661)
|.. .++.++. +|..+ +.-+++.|-.+|..+...-. -..+++.|+..+++.++.++..++....+..
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 211 3344444 33333 23467777778777753311 1234566777777777777776665554443
No 333
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.67 E-value=52 Score=36.54 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=76.1
Q ss_pred hCCHHHHHHh-hCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhh
Q 006099 395 AGAIPLLVGL-LSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKV 472 (661)
Q Consensus 395 ~g~i~~Lv~l-L~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~ 472 (661)
.|+|..|+.. .++.|.++++.|+-+|+-.+.++ ...+...+++|.. .+.-+|.-.+-+|.-.+.....+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 3567777776 66678899999998888877653 3456667777754 47777877777776665443222
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCC
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP 531 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~ 531 (661)
-++..|-.+..+.+.-+++.|+-++.-+......+-.---.+++..+.+++.+.
T Consensus 621 -----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 621 -----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred -----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 234455555556666777777777776654332221111234555666666553
No 334
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.54 E-value=40 Score=37.54 Aligned_cols=103 Identities=23% Similarity=0.173 Sum_probs=71.0
Q ss_pred cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006099 518 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAE 597 (661)
Q Consensus 518 ~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~ 597 (661)
.|.+..+++-+.+++..++..++.+|+.+...-..-...+-.|.+..|.+-+-+..+.+|..|+.+|..+-..+...
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--- 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--- 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh---
Confidence 47788888888889999999999999988876544445555567777777777778899999999988875322111
Q ss_pred HHHcCCHHHHHHhhhcC-ChHHHHHHHHH
Q 006099 598 AKELGVMGPLVDLAQNG-TDRGKRKAAQL 625 (661)
Q Consensus 598 ~~~~g~i~~L~~ll~~~-~~~~k~~A~~l 625 (661)
+..+...|..+++++ +..+++.|..-
T Consensus 167 --en~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 167 --ENRIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 112344666666654 56666655443
No 335
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=68.77 E-value=5.7 Score=36.31 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=33.6
Q ss_pred CccCcCCcccccCCeecCCCc-----cccHHHHHHHHHh-CCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEA-GHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~ 307 (661)
+..|-||.+--. +..-||.. ...++|+++|++. +...||.|+.+..
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 457999987753 33456643 3479999999984 5678999988765
No 336
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=68.38 E-value=60 Score=35.33 Aligned_cols=262 Identities=14% Similarity=0.071 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC------CcchhHhhhCCChHHH
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC------EDNKGSIVSSGAVPSI 442 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~------~~~k~~i~~~g~i~~L 442 (661)
..+.++++.|..++....-.+..+++.| ..+...+...++.++.++...|..+-.. ++..+.=...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 4678888888888865444444443322 3333445566889999988888776321 1111111111111111
Q ss_pred H------HHH-ccCCHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHH
Q 006099 443 V------HVL-RIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514 (661)
Q Consensus 443 v------~lL-~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 514 (661)
. ..+ ++..+..+..++.++.+++...-++---++. ..+..+...-++.+.-++..|.+++.-+..++..+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 1 111 1112345566677777765432110000000 0111111111222333556677788888888877664
Q ss_pred HH-HcCChHHHHhcccCCCccHHHHHHHHHHHhcC-----ChhhH---HHHHhCCChHHHHHHhh---CCCHHHHHHHHH
Q 006099 515 AV-RAGVVPTLMHLLTEPGGGMVDEALAILAILSS-----HPEGK---AAIGAAEAVPVLVEVIG---NGSPRNRENAAA 582 (661)
Q Consensus 515 iv-~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-----~~~~~---~~i~~~g~i~~Lv~lL~---~~~~~~ke~A~~ 582 (661)
.. -..+...+...|.+..-..++.+.+.+.|++. .|..+ ..+... .+..++..-. ....+++.+|+.
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 33 34566666666766667778888888888764 23322 222211 1222222221 245788999999
Q ss_pred HHHHHhcCCH---H-HHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 583 VLVHLCAGDQ---Q-YLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 583 ~L~~L~~~~~---~-~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.|.|+..--. + .-.++.+...+..+......+..+++=+|..++.||-+..
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9998864211 0 0111122112222222334557778888999998887643
No 337
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=68.31 E-value=1.9 Score=48.68 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=39.8
Q ss_pred CCccCcCCcccccCCeecCCCccccHHHHHHHHH--hCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE--AGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~--~~~~~cP~~~~~l~ 307 (661)
.+..||||.....+|+.+.|.|.||+.|+..-|. .+...||+|+....
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3567999999999999999999999999988665 34567999985554
No 338
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.05 E-value=5 Score=42.20 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=27.2
Q ss_pred CCccCcCCcccccC---CeecCCCccccHHHHHHHHH
Q 006099 260 DDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 260 ~~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~ 293 (661)
.-|.|-||++-..- =+.+||+|.||+.|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 35789999975543 23479999999999999997
No 339
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.95 E-value=2.1 Score=36.66 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=26.2
Q ss_pred CCCCCccCcCCcccccCCee--cCCCccccHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVI--VSTGQTYERSCIE 289 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~--~~cg~t~~r~~I~ 289 (661)
.+.++-.|++|...+.+++. .||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44556679999999887764 4999999988874
No 340
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=67.76 E-value=7.2 Score=30.93 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=22.2
Q ss_pred ccCcCCccccc-----CCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELMK-----DPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m~-----dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|.||.+-.- +|.+. .|+.-.||.|++--.+.|+..||.|+.+..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 47999987442 44443 578889999999888899999999986554
No 341
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=67.59 E-value=1.1e+02 Score=30.34 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCC------------------ccHHHHHHHHHHHhcCChhhH
Q 006099 492 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPG------------------GGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 492 ~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~------------------~~~~~~al~~L~~L~~~~~~~ 553 (661)
..-...+|..+..|...+++...+...+.++.+...|..-+ ..+...=...|+.|+.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 44556678888888888887777778888888877775421 012222356778999999999
Q ss_pred HHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 554 AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 554 ~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
..+-+.+....+..+....+. -....-+|.+|=.+.++... ..|-..+.+++..+|..|...|+.+-+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999899999999999976533 22222344444222222222 234466788899999999999987653
No 342
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.54 E-value=99 Score=35.25 Aligned_cols=206 Identities=18% Similarity=0.087 Sum_probs=104.6
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc----hhHhhhC---CChHHHHHHHccCCHHHHHHHHHHHHHcccC--
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN----KGSIVSS---GAVPSIVHVLRIGSMEARENAAATLFSLSVI-- 467 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~----k~~i~~~---g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-- 467 (661)
.+-.|+++|+.-+.+-......-+.. .. ... .+.+... .++..+.+.+.++..... .++.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 34566667766554444433333322 10 111 2223333 356666677766532111 122222222111
Q ss_pred CchhhhhhhcCCcHHHHHhhhcC----CHHHHHHHHHHHHHhhc----ccCchHHHHHcCChHHHHhcccC----CCccH
Q 006099 468 DENKVTIGASGAIPPLVTLLSEG----TQRGKKDAATALFNLCI----YQGNKGKAVRAGVVPTLMHLLTE----PGGGM 535 (661)
Q Consensus 468 ~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~----~~~~~ 535 (661)
.+. ...+..+..++.+. .+.++..|+.++++|.. ..+.....+....++.+...|.. .+..-
T Consensus 389 ~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 111 13456677777653 34566666666666643 33322122223455556555533 33334
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh
Q 006099 536 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG---NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 536 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 612 (661)
+..++.+|+|+... ..++.+..++. ..++.+|..|+++|..++...+.. +.+.|+.+..
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHc
Confidence 45567777766542 23455555554 234688999999999887654422 3455666666
Q ss_pred cC--ChHHHHHHHHHHHHH
Q 006099 613 NG--TDRGKRKAAQLLERM 629 (661)
Q Consensus 613 ~~--~~~~k~~A~~lL~~L 629 (661)
+. ++++|-.|..+|-..
T Consensus 525 n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCCChHHHHHHHHHHHhc
Confidence 54 566666666655544
No 343
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.29 E-value=28 Score=31.23 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=58.9
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhc---CChHHHHHHHHHHHHHHhhHH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQN---GTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~---~~~~~k~~A~~lL~~L~~~~~ 634 (661)
++..|-.-|++++|.++..|+.+|-.+..+.+. ....+....++..|+.++.. .++.+++++..++........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 466777788899999999999999998877664 55666666777789999875 478899999999988776443
No 344
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.49 E-value=1.4e+02 Score=35.46 Aligned_cols=135 Identities=19% Similarity=0.139 Sum_probs=82.3
Q ss_pred CCHHHHHHhhCC--------CChHHHHHHHHHHHhccC----CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHH
Q 006099 396 GAIPLLVGLLST--------PDSRTQEHAVTALLNLSI----CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFS 463 (661)
Q Consensus 396 g~i~~Lv~lL~s--------~~~~i~~~A~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~ 463 (661)
|.++.++..|.+ .++.-.+-|+.++++|+. ....+. .++.=.+..+...+++...-+|..||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 567777777762 245556678888888762 122222 2233345555556677777789999999999
Q ss_pred cccCCchhhhhhhcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHHH---cCChHHHHhcccCCC
Q 006099 464 LSVIDENKVTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVR---AGVVPTLMHLLTEPG 532 (661)
Q Consensus 464 Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv~---~g~v~~Lv~lL~~~~ 532 (661)
++..+ .+..-.-..++....+.|. +.+..++..|+-||..+..+.+....-++ .+.++.|+.+.+..+
T Consensus 489 ~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 489 FSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 98443 1222222345555566666 55678889999999998877664433232 345555666555433
No 345
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=66.39 E-value=2.7e+02 Score=36.34 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=111.2
Q ss_pred CCCChHHHHHHHHHHHhccCCCcchhHh----hhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhcCCc
Q 006099 406 STPDSRTQEHAVTALLNLSICEDNKGSI----VSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGASGAI 480 (661)
Q Consensus 406 ~s~~~~i~~~A~~~L~nLs~~~~~k~~i----~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i 480 (661)
.+.+..+...|+..|..++..--.++.+ .....+.++..++.+. +.++++..+.++.++...... .| . .+.
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-k-SGW 1222 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-K-SGW 1222 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-h-cCc
Confidence 3446777888888888877531112221 2346778888877654 789999999999887543221 11 2 255
Q ss_pred HHHHHhhh----cCCHHHHHHHHHHHHHhhcccCchHHHHH--cCC----hHHHHhcccC-CCccHHHHHHHHHHHhcCC
Q 006099 481 PPLVTLLS----EGTQRGKKDAATALFNLCIYQGNKGKAVR--AGV----VPTLMHLLTE-PGGGMVDEALAILAILSSH 549 (661)
Q Consensus 481 ~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~iv~--~g~----v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~ 549 (661)
+.+..++. ...+.+...|..++..+....= ..+.. .+. |..|..+-.. .+.++.-.|+..|++++..
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f--~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF--PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh--hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 66666665 3456777778777776653211 11111 233 3334444433 2355666777777755210
Q ss_pred ----h---------------------hhHH---HHH-----hCCChHHHHHH---hhCCCHHHHHHHHHHHHHHhcCCH-
Q 006099 550 ----P---------------------EGKA---AIG-----AAEAVPVLVEV---IGNGSPRNRENAAAVLVHLCAGDQ- 592 (661)
Q Consensus 550 ----~---------------------~~~~---~i~-----~~g~i~~Lv~l---L~~~~~~~ke~A~~~L~~L~~~~~- 592 (661)
+ .+.. .+. ....+|.|..+ ..+..+++|..|+.+|..+....+
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 0000 000 11245555444 345668899999999988764322
Q ss_pred ----HHHHHHHHcCCHHHHHHhhh
Q 006099 593 ----QYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 593 ----~~~~~~~~~g~i~~L~~ll~ 612 (661)
+....+.. +++-+++..++
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHH
Confidence 33333333 46666665553
No 346
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=66.13 E-value=20 Score=31.63 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=51.8
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHH-HHHHHH-cCCHHHHHHhhh-----cC---ChHHHHHHHHHHHHHH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQY-LAEAKE-LGVMGPLVDLAQ-----NG---TDRGKRKAAQLLERMS 630 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~-~~~~~~-~g~i~~L~~ll~-----~~---~~~~k~~A~~lL~~L~ 630 (661)
++..|.+-|++.++.+|..|+.+|-.+|..++.. +..+.. ...|..+.++-. .| ...++..|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4557777778888999999999999999877644 444433 245777776664 22 4668899999998876
Q ss_pred h
Q 006099 631 R 631 (661)
Q Consensus 631 ~ 631 (661)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 347
>PRK14707 hypothetical protein; Provisional
Probab=65.84 E-value=4.2e+02 Score=34.84 Aligned_cols=266 Identities=18% Similarity=0.139 Sum_probs=130.6
Q ss_pred HHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCChHHHHHHHHHHHhc-cCCCcchhH
Q 006099 357 EILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNL-SICEDNKGS 432 (661)
Q Consensus 357 ~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~i~~~A~~~L~nL-s~~~~~k~~ 432 (661)
..++...+. ++.+.+..+......++. .+..+..+-.. +|-.++.-+ +-++...-.+|+..|... +.+..-+..
T Consensus 166 ~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q-~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 166 SLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQ-GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Confidence 334444432 334444444444444443 44444444333 344444444 445555555666666654 444333333
Q ss_pred hhhCCChHHHHHHHcc-CCHHHHHHHHHHH-HHcccCCchhhhhhhcCCcHHHHHhh-hcCCHHHHHHHHHHHH-Hhhcc
Q 006099 433 IVSSGAVPSIVHVLRI-GSMEARENAAATL-FSLSVIDENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALF-NLCIY 508 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~-nL~~~ 508 (661)
+ +.-++...++.|.. .+..+..+++..| ..|+....-+..+...+ +...++-| +-.+..+...|+..|. .|...
T Consensus 244 ~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 244 L-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred C-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 3 44445555555544 3444555555554 44543333333332222 22222222 2234444444444444 45554
Q ss_pred cCchHHHHHcCChHHHHhcccC-CCccHHHHHHHHH-HHhcCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAIL-AILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLV 585 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L-~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~ 585 (661)
.+-+.. ...-.+..+++-|+. ++..+...|...| ..|+.+++.++.+--. ++..++.-|. =++..+...|+..|.
T Consensus 322 ~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 322 PELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred Hhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 443432 233344555555544 6655555555555 5888888777666533 3444555443 234445555555555
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 586 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 586 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
.=..++++....+--.|+-..|-.+.+=++..+...|+..|..
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 5444566666665555666666666666666666666665543
No 348
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.61 E-value=1.5e+02 Score=29.45 Aligned_cols=135 Identities=20% Similarity=0.155 Sum_probs=81.3
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhC
Q 006099 358 ILLCKL-TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS 436 (661)
Q Consensus 358 ~Lv~~L-~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~ 436 (661)
.|+..+ +..++..+...++.|..++.++..+... ++..|..+...+....+..+...+..+-..+ ++..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f---- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHF---- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHH----
Confidence 344433 3467889999999999998754122211 2455555666666666555666665554321 1111
Q ss_pred CChHHHHHHH--------ccC--CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh-hcCCHHHHHHHHHHHHHh
Q 006099 437 GAVPSIVHVL--------RIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNL 505 (661)
Q Consensus 437 g~i~~Lv~lL--------~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL 505 (661)
+.+..++..+ .++ ..+.....+.++..++...++ .....++.+..+| ++.++..+..++.+|..|
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3344343331 111 234455556677777766655 2235778888888 677888888999999999
Q ss_pred h
Q 006099 506 C 506 (661)
Q Consensus 506 ~ 506 (661)
+
T Consensus 150 c 150 (234)
T PF12530_consen 150 C 150 (234)
T ss_pred H
Confidence 8
No 349
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.61 E-value=25 Score=32.06 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=59.7
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHHHHHhhH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~L~~~~ 633 (661)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++.. .+..+++++..++...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 56677777888999999999999998887665 455677777899999999987 78899999999988876443
No 350
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.47 E-value=2.8 Score=43.44 Aligned_cols=44 Identities=20% Similarity=0.557 Sum_probs=35.3
Q ss_pred CCccCcCCccccc-CC---eecCCCccccHHHHHHHHH-hCCCCCCCCC
Q 006099 260 DDFRCPISLELMK-DP---VIVSTGQTYERSCIEKWLE-AGHRTCPKTQ 303 (661)
Q Consensus 260 ~~f~CpIc~~~m~-dP---v~~~cg~t~~r~~I~~w~~-~~~~~cP~~~ 303 (661)
-++.|-.|++.+- .| -.+||.|.|.-.|.+.++. .+..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3578999999763 22 2479999999999999986 4558999998
No 351
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=65.39 E-value=44 Score=28.24 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHc
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR 447 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 447 (661)
+++..|+..|..=-.++--....+. ..+.+..|++-...+....++.++..|..+..++.....+.+-|+...+.++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566666655432222222222222 445667777777777777889999999999999888888889999888666655
Q ss_pred cCCHHHHHHHHHHHH
Q 006099 448 IGSMEARENAAATLF 462 (661)
Q Consensus 448 ~~~~e~~~~a~~~L~ 462 (661)
.-++..+...-.++.
T Consensus 82 ~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 82 NVEPNLQAEIDEILD 96 (98)
T ss_pred cCCHHHHHHHHHHHh
Confidence 556666555544443
No 352
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=65.11 E-value=5.6 Score=28.60 Aligned_cols=39 Identities=36% Similarity=0.829 Sum_probs=22.5
Q ss_pred CcCCccccc--CCeecCCC-----ccccHHHHHHHHH-hCCCCCCCC
Q 006099 264 CPISLELMK--DPVIVSTG-----QTYERSCIEKWLE-AGHRTCPKT 302 (661)
Q Consensus 264 CpIc~~~m~--dPv~~~cg-----~t~~r~~I~~w~~-~~~~~cP~~ 302 (661)
|-||++--. +|.+.||+ ...-+.|+.+|+. +++.+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 445655432 25677764 2357899999998 456778876
No 353
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=65.09 E-value=2.6 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCccCcCCcccccCCeecCCCccccHHHHHHHHHh-CCCCCCCCCC
Q 006099 260 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQ 304 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~-~~~~cP~~~~ 304 (661)
+.|.||.|.+.+.. ..+...+......+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46999999994432 12344444444432 3467999975
No 354
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.91 E-value=32 Score=31.30 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=59.1
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHhhH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~~~ 633 (661)
++..|.+-|.++++.++..|+.+|-.+..+. ...-..+...+++..|..++. ..++.+++++..++..-....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 5667777888899999999999888887764 456677778889999999887 457889999999988877543
No 355
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.46 E-value=19 Score=40.63 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=71.1
Q ss_pred HHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhC------CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHH
Q 006099 522 PTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA------EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL 595 (661)
Q Consensus 522 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~ 595 (661)
..++.+|.+.+-.++-..+.+.+|+..+-.....+++. ..+..|++-+.+.+|-+|..|..++..+|.-+....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 45777888777777777788888887653222233321 245556666667889999999999999986554221
Q ss_pred HHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 596 AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 596 ~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
..- ..++.....-+++.+..++++|..++.-|-
T Consensus 382 ~~r--~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 382 GRR--HEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred chH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 111 124445556677788889999998887553
No 356
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.19 E-value=20 Score=33.47 Aligned_cols=107 Identities=20% Similarity=0.123 Sum_probs=66.4
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhcCC-HHHHHHHHHHHHHhhcccCchHH
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGT-QRGKKDAATALFNLCIYQGNKGK 514 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~ 514 (661)
.+..+..+|++.+.+.|-.++..+..++.... ...+.+. ..+..|+.+|+..+ ..+++.++.+|..|...-..+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44557778888787878777777776664432 2333233 67788888888754 56778888888888765555444
Q ss_pred HHHc-------CChHHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 515 AVRA-------GVVPTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 515 iv~~-------g~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
+.+. ++++.+++++.. ....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 4432 234444554442 455566666666443
No 357
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.58 E-value=6 Score=29.23 Aligned_cols=29 Identities=31% Similarity=0.759 Sum_probs=23.2
Q ss_pred CccCcCCcccc--cCCeec--CCCccccHHHHH
Q 006099 261 DFRCPISLELM--KDPVIV--STGQTYERSCIE 289 (661)
Q Consensus 261 ~f~CpIc~~~m--~dPv~~--~cg~t~~r~~I~ 289 (661)
.-.|++|.+.+ .|.+++ .||-.|-|.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 34799999999 666664 699999999954
No 358
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.51 E-value=22 Score=40.27 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=78.0
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHH------cCChHHHHhcccCCCccHHHHHHHHHHHhcCCh---
Q 006099 480 IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVR------AGVVPTLMHLLTEPGGGMVDEALAILAILSSHP--- 550 (661)
Q Consensus 480 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~------~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--- 550 (661)
...++.+|++.+--.+...+.+++|+..+-....++++ ...+..|+.-|.+.++-++..|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 46778889888888888888889998876554445554 234445555566688899999999998887654
Q ss_pred -hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 551 -EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 551 -~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
.-|.++ +...++-|++.+..+|.+|+.++..|....|
T Consensus 381 ~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 233444 4456677788888999999999988765544
No 359
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.59 E-value=21 Score=33.43 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=69.9
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhC--CChHHHHHHHccC-CHHHHHHHHHHHHHcccC----Cc
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSS--GAVPSIVHVLRIG-SMEARENAAATLFSLSVI----DE 469 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~--g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~----~~ 469 (661)
.+..+..+|++++...+-.++..+.-.+... ..+.+.+. --+..++.+|+.. ...+.+.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4556778888888888887777665555432 23444333 3567788888776 467777888777766533 33
Q ss_pred hhhhhhhc---CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 470 NKVTIGAS---GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 470 ~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
...++... ++++.++.+++. ......++.+|..+.....
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 34444333 666777777664 4556677777777765433
No 360
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=62.55 E-value=1.8e+02 Score=33.13 Aligned_cols=132 Identities=19% Similarity=0.078 Sum_probs=76.1
Q ss_pred ChHHHHHHHccC----CHHHHHHHHHHHHHccc----CCchhhhhhhcCCcHHHHHhhhc----CCHHHHHHHHHHHHHh
Q 006099 438 AVPSIVHVLRIG----SMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLLSE----GTQRGKKDAATALFNL 505 (661)
Q Consensus 438 ~i~~Lv~lL~~~----~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL 505 (661)
.+..+..++++. ...++..|.-++++|.. ..+.........+++.|.+.|.. ++..-+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456677777653 34566666666666543 22211112223466677766653 3445566778888887
Q ss_pred hcccCchHHHHHcCChHHHHhccc-C--CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC--CCHHHHHHH
Q 006099 506 CIYQGNKGKAVRAGVVPTLMHLLT-E--PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN--GSPRNRENA 580 (661)
Q Consensus 506 ~~~~~~~~~iv~~g~v~~Lv~lL~-~--~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~ke~A 580 (661)
... ..+..|..++. . ....++..|+.+|..++..... .+-+.++.+..+ .++++|..|
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHH
Confidence 653 24445555554 2 3456888899999877642211 234556666654 346777777
Q ss_pred HHHHHH
Q 006099 581 AAVLVH 586 (661)
Q Consensus 581 ~~~L~~ 586 (661)
+.+|..
T Consensus 537 ~~~lm~ 542 (574)
T smart00638 537 VLVLME 542 (574)
T ss_pred HHHHHh
Confidence 665554
No 361
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=61.72 E-value=37 Score=38.63 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhh
Q 006099 394 EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV 472 (661)
Q Consensus 394 ~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~ 472 (661)
+.+++|.|++++++.|..+|..- |-++-.. +.--..+++.-+++.+..-+.+.++.+|+.++..+..|+.-=..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~L---L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLL---LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHH---HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 44689999999999998888543 3333222 223455677888999999999999999999998887776431111
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCC-hHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGV-VPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~-v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
......+..+.++-.+....++.+...+|..++.+-... ++.++ +.+..+-+.++-...+..++..++......+
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 111122233333322334455555555555555442211 12232 2334445555555556667766665555443
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 586 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~ 586 (661)
.... ...++|.++.+.-+.+..++..|-.++..
T Consensus 480 ~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 480 QSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hhhh--hhhccccccccccCcccchhhHHHHHHHH
Confidence 3322 22467777777766666666666655544
No 362
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.19 E-value=1.9e+02 Score=29.28 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=95.5
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCc--------chhHhhhCCChHHHHHHHccCC----HHHHHHHHHHHHHc
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICED--------NKGSIVSSGAVPSIVHVLRIGS----MEARENAAATLFSL 464 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~--------~k~~i~~~g~i~~Lv~lL~~~~----~e~~~~a~~~L~~L 464 (661)
..+.+++=|.+. ...+.++..|..|..... +|-.+.--+.+|.++.-+.+++ ......+|..|..+
T Consensus 65 lq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 65 LQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 344444444443 344556666666654321 2222223445555666665555 13445666777777
Q ss_pred ccCCchhhhhhhcCCcHHHHHhhhcCC----HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHH
Q 006099 465 SVIDENKVTIGASGAIPPLVTLLSEGT----QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEAL 540 (661)
Q Consensus 465 s~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al 540 (661)
+.... .+.+..++.....+. .+-...++..|+.-..- + .+..++.-|+++|.++...++...+
T Consensus 143 a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P-~-----~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 143 AEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP-D-----HEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc-h-----hHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 63211 123333344433332 22334444444433221 1 1233555688999888889999999
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 541 AILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 541 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
.+|..+-..-+.+.. ...+.+..++++|+++- -..|..+|-++.
T Consensus 210 ~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 999988776655544 44457889999997653 455666665544
No 363
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=42 Score=37.18 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=51.2
Q ss_pred cCChHHHHhc-ccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCH
Q 006099 518 AGVVPTLMHL-LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 518 ~g~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
.|+|..|+.. .++.+.+++..|+-+|+-+|..+ ...++..+++|. +.++.+|-..+.+|.--|.+.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 4677788887 66788899999999998766543 245667777775 5678899888888888887765
No 364
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.00 E-value=1.6e+02 Score=33.78 Aligned_cols=130 Identities=21% Similarity=0.155 Sum_probs=72.6
Q ss_pred HHHHHHhhCC----CChHHHHHHHHHHHhccC----CC------cchhHhhhCCChHHHHHHHc----cCCHHHHHHHHH
Q 006099 398 IPLLVGLLST----PDSRTQEHAVTALLNLSI----CE------DNKGSIVSSGAVPSIVHVLR----IGSMEARENAAA 459 (661)
Q Consensus 398 i~~Lv~lL~s----~~~~i~~~A~~~L~nLs~----~~------~~k~~i~~~g~i~~Lv~lL~----~~~~e~~~~a~~ 459 (661)
+..+..++++ .+..++..|+-+++.|.. .. ..+........++.+...|. .++.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445556654 245566667767766643 21 11122223456666766665 345677788889
Q ss_pred HHHHcccCCchhhhhhhcCCcHHHHHhhhcC---CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC--CCcc
Q 006099 460 TLFSLSVIDENKVTIGASGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGG 534 (661)
Q Consensus 460 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~ 534 (661)
+|.|+-. ...++.|..++... +..++..|+.+|..+......+ +.+.|++++.+ .+.+
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPE 575 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HH
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChh
Confidence 9988842 24667777777765 5678888999998885544332 33456777765 3455
Q ss_pred HHHHHHHHHH
Q 006099 535 MVDEALAILA 544 (661)
Q Consensus 535 ~~~~al~~L~ 544 (661)
++..|..+|.
T Consensus 576 vRiaA~~~lm 585 (618)
T PF01347_consen 576 VRIAAYLILM 585 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 365
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.16 E-value=30 Score=31.27 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCC-ChH---HHHHHHHHHHhcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTP-DSR---TQEHAVTALLNLS 424 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~-~~~---i~~~A~~~L~nLs 424 (661)
....+..|.+.|.++++.+|..|+..|..+.+.. +.....+....++..|..++.+. ... +++.++..+...+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999998765 45567777778999999988753 333 7888888777665
No 366
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.14 E-value=9.9 Score=26.74 Aligned_cols=39 Identities=15% Similarity=0.447 Sum_probs=21.1
Q ss_pred CcCCcccccCCeec---CCCccccHHHHHHHHHhCCC-CCCCC
Q 006099 264 CPISLELMKDPVIV---STGQTYERSCIEKWLEAGHR-TCPKT 302 (661)
Q Consensus 264 CpIc~~~m~dPv~~---~cg~t~~r~~I~~w~~~~~~-~cP~~ 302 (661)
|-+|.++...-+.- .|+-.+-..|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55677766655543 37777888999999984443 59976
No 367
>PHA02862 5L protein; Provisional
Probab=60.04 E-value=7.2 Score=34.93 Aligned_cols=44 Identities=14% Similarity=0.400 Sum_probs=31.6
Q ss_pred cCcCCcccccCCeecCCC-----ccccHHHHHHHHH-hCCCCCCCCCCCCc
Q 006099 263 RCPISLELMKDPVIVSTG-----QTYERSCIEKWLE-AGHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~cg-----~t~~r~~I~~w~~-~~~~~cP~~~~~l~ 307 (661)
.|-||++-=.+. .-||. .-..+.|+++|++ .+...||.|+.+..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 577888764443 34553 3467899999998 45678999998775
No 368
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=59.52 E-value=35 Score=28.46 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred hHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH
Q 006099 521 VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ 593 (661)
Q Consensus 521 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~ 593 (661)
+...+..|.++.+.++..++..|..|..... ...+-..+++..++..|++.++=+--+|+..|..|+...|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455667778889999999999999988776 11112235677778888888888999999999999987764
No 369
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.05 E-value=4.7e+02 Score=33.10 Aligned_cols=264 Identities=14% Similarity=0.070 Sum_probs=130.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCCC---C-----hHHHHHHHHHHHhccCCC--
Q 006099 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTP---D-----SRTQEHAVTALLNLSICE-- 427 (661)
Q Consensus 359 Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~s~---~-----~~i~~~A~~~L~nLs~~~-- 427 (661)
|++.+-..+......|+.+|+.++.....+...+... ...-..+..+++. + .......+.+++-|+.+-
T Consensus 1126 L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf 1205 (1692)
T KOG1020|consen 1126 LLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDF 1205 (1692)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccC
Confidence 3333334455566778888888876422222222111 1111222222332 2 123334566677776521
Q ss_pred -----cchh-----HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHH-H-H
Q 006099 428 -----DNKG-----SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQR-G-K 495 (661)
Q Consensus 428 -----~~k~-----~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~-~ 495 (661)
+.+. .-...+++..|.-+.+..+.++|..|+..|..++..++ ..+.+......+-..|.+.+.. . +
T Consensus 1206 ~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp--~l~~~~~v~nly~~ila~~n~~~~~k 1283 (1692)
T KOG1020|consen 1206 PKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHP--SLFTSREVLNLYDEILADDNSDIKSK 1283 (1692)
T ss_pred CCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCc--hhhhhHHHHHHHHHHHhhhcccHHHH
Confidence 1111 12245566666666666778999999999999886543 1222223333444444443221 1 3
Q ss_pred HHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC------hhhHHHHHhCCChHHHHHHh
Q 006099 496 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH------PEGKAAIGAAEAVPVLVEVI 569 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~------~~~~~~i~~~g~i~~Lv~lL 569 (661)
..++..+.-.....+. .+...|. ......-..-+..+-.. .++...++. -.++.+++.-
T Consensus 1284 i~~l~n~~~yL~eee~--~l~~~~~------------~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Q-lfl~~ILe~c 1348 (1692)
T KOG1020|consen 1284 IQLLQNLELYLLEEEK--KLRNKGK------------NWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQ-LFLDNILESC 1348 (1692)
T ss_pred HHHHHHHHHHHHHHHH--HHHhccc------------chhhhhhHHHHHhhcccccccccccchHHHHH-HHHHHHHHHH
Confidence 3333333322222211 1111111 00000000001111110 011111111 1233444433
Q ss_pred hCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 006099 570 GNGSPRNRENAAAVLVHLCAGDQQYLAEAKEL-GVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTES 645 (661)
Q Consensus 570 ~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~ 645 (661)
-+.+..++..|+.+++-+...+- +.+ ..+|.|+.+-.++....++.|-.+|..|.+.++..-.+-...|.
T Consensus 1349 l~~d~~~r~~aikvl~liL~QGL------VhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~ 1419 (1692)
T KOG1020|consen 1349 LDRDLQVRLVAIKVLKLILNQGL------VHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGV 1419 (1692)
T ss_pred hccchHHHHHHHHHHHHHHHccC------CCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 35677889999988887765431 111 35899999999999999999999999999988765555544443
No 370
>PF14353 CpXC: CpXC protein
Probab=57.74 E-value=7.2 Score=34.72 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCC---CCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGH---RTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~---~~cP~~~~~l~ 307 (661)
+..||-|+..+.-.+-..-.-+......++-++ |. .+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCcee
Confidence 367999999887655433333344555555554 44 68999998764
No 371
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.61 E-value=6.4 Score=39.29 Aligned_cols=28 Identities=21% Similarity=0.568 Sum_probs=22.4
Q ss_pred CccccHHHHHHHHH------------hCCCCCCCCCCCCc
Q 006099 280 GQTYERSCIEKWLE------------AGHRTCPKTQQTLT 307 (661)
Q Consensus 280 g~t~~r~~I~~w~~------------~~~~~cP~~~~~l~ 307 (661)
....|++|+-+||. +|..+||+||+.+-
T Consensus 326 rp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 326 RPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred ccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 34578999999985 36789999998775
No 372
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.06 E-value=94 Score=38.73 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTI 474 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i 474 (661)
+++..++.+|..+...+|..|+.+|.++..-+. ..+.....-..+..-+.+.+..+|+.|+..++...... +...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 457788888998889999999999999865322 11112233334555555667889999999997654332 22222
Q ss_pred hhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHH
Q 006099 475 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 514 (661)
+...+.+-+.+....+++.+++++..+|...++-..
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence 234455566666788999999999999987776543
No 373
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=56.88 E-value=3.1e+02 Score=30.34 Aligned_cols=255 Identities=14% Similarity=0.117 Sum_probs=125.3
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-C---ChHHHHHHHHHHHhccCCCcc
Q 006099 356 IEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-P---DSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 356 i~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~---~~~i~~~A~~~L~nLs~~~~~ 429 (661)
+-.+.+.|-. ...+.|..++.-|..+.+..... ..... ..+.+.+.. . |-..+. .+|..|+.+..+
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R----~~fF~~I~~~~~~~d~~~~l---~aL~~LT~~Grd 100 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMR----AEFFRDISDPSNDDDFDLRL---EALIALTDNGRD 100 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHH----HHHHHHHhcCCCchhHHHHH---HHHHHHHcCCcC
Confidence 4444444443 23466777777777776543321 00111 112222232 2 233444 445555544333
Q ss_pred hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHccc---CCchhhhh---hhc----CCcHHHHHhhhcC----CHHHH
Q 006099 430 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV---IDENKVTI---GAS----GAIPPLVTLLSEG----TQRGK 495 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~---~~~~~~~i---~~~----g~i~~Lv~lL~~~----~~~~~ 495 (661)
-. ..+.+..+.+...|...- .++..-...+. ....+... .+. ..+..++++++.. +....
T Consensus 101 i~-~~~~~i~~~L~~wl~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i 174 (464)
T PF11864_consen 101 ID-FFEYEIGPFLLSWLEPSY-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEI 174 (464)
T ss_pred ch-hcccchHHHHHHHHHHHH-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 22 247778888888775421 11111111111 11111111 122 3444455555433 33444
Q ss_pred HHHHHHHHHhhcccCchH----------HHHHcCCh-----HHHHhcccC--CCccHHHHHHHHHHHhcCChhhHHHHHh
Q 006099 496 KDAATALFNLCIYQGNKG----------KAVRAGVV-----PTLMHLLTE--PGGGMVDEALAILAILSSHPEGKAAIGA 558 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~~~~----------~iv~~g~v-----~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~~~~~~i~~ 558 (661)
...+..++.+|....+.. .++..|.+ +.++..|.+ ........+..++.||+...-+..
T Consensus 175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~---- 250 (464)
T PF11864_consen 175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS---- 250 (464)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH----
Confidence 445555555654443322 23344543 345555544 334667778888888887765543
Q ss_pred CCChHHHHHHhhCC------CHHHHHHHHHHHHHHhcCCHHHH-HHHHHc--CCHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006099 559 AEAVPVLVEVIGNG------SPRNRENAAAVLVHLCAGDQQYL-AEAKEL--GVMGPLVDLAQNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 559 ~g~i~~Lv~lL~~~------~~~~ke~A~~~L~~L~~~~~~~~-~~~~~~--g~i~~L~~ll~~~~~~~k~~A~~lL~~L 629 (661)
++..|..+|.+. +..+-.-|+.++..+..+.++.. ..+--. -+++.|...++.+++.+--....++..+
T Consensus 251 --~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 251 --AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred --HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 345677777322 24445578888888776653222 122112 2678888888877766655555555544
Q ss_pred H
Q 006099 630 S 630 (661)
Q Consensus 630 ~ 630 (661)
-
T Consensus 329 l 329 (464)
T PF11864_consen 329 L 329 (464)
T ss_pred H
Confidence 4
No 374
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.73 E-value=4.1 Score=39.88 Aligned_cols=48 Identities=15% Similarity=0.438 Sum_probs=32.1
Q ss_pred cCCe-ecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHH
Q 006099 272 KDPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQW 324 (661)
Q Consensus 272 ~dPv-~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~ 324 (661)
.+|. +++|+|.||..|...- ....||.|++++....+.+| +..-|..+
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~ir~i~l~~s--lp~~ik~~ 63 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSIRIIQLNRS--LPTDIKSY 63 (233)
T ss_pred CCceeeeechhhhhhhhcccC---Cccccccccceeeeeecccc--cchhHHHH
Confidence 5665 4699999999996542 22389999998765555544 44444444
No 375
>PRK12495 hypothetical protein; Provisional
Probab=56.66 E-value=13 Score=35.94 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 006099 188 TQESLALHEMVASTGGDPGETIEKMSMLLKKI 219 (661)
Q Consensus 188 ~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~ 219 (661)
..|.+.|.+..+.- .+..+..++|..||.+.
T Consensus 7 EaEREkLREKye~d-~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 7 EAEREKLREKYEQD-EQKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhh
Confidence 45666665544321 12234567778877665
No 376
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.46 E-value=49 Score=29.97 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=57.9
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc------CChHHHHHHHHHHHHHHhhH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~L~~~~ 633 (661)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+...+++.-|+.++.. .+..++.+...++..-+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56677788889999999999999988877554 466777778889899999853 46889999998888776543
No 377
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.92 E-value=51 Score=36.72 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=73.6
Q ss_pred hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhh
Q 006099 395 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 474 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 474 (661)
.|.+..+++.+.++|..++...+.+|.-++..-.--...+..|.+..|..-+-+..+.+|..|+.+|..+-....+-..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 4667788888889999999999998888875433333455667777777766666778999999999887544332211
Q ss_pred hhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcccCchH
Q 006099 475 GASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~ 513 (661)
.....|+.+++++ +.+++..| |.|+...+....
T Consensus 169 ---~~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p 202 (885)
T COG5218 169 ---RIVNLLKDIVQNDPSDEVRRLA---LLNISVDNSTYP 202 (885)
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcch
Confidence 1223566666654 34565543 566666555444
No 378
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.77 E-value=3.6e+02 Score=30.71 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhhhhhHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 006099 31 KQYCNLARRLKLLTPMFEEIKESKEAIPEETSKALVSLKEALASAKELLRFGSE 84 (661)
Q Consensus 31 ~~~~~~~~~~~~l~~~leel~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~ 84 (661)
+.-.+..+++..+.-.++||...+. .+.--..|+.-+..|..+..+.+.+..
T Consensus 182 ~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~ 233 (563)
T TIGR00634 182 QKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQN 233 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3345567899999999999987653 334445555666666666666555543
No 379
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=55.75 E-value=55 Score=29.31 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=56.5
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhcC-C-hHHHHHHHHHHHHHHhhH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQNG-T-DRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~-~-~~~k~~A~~lL~~L~~~~ 633 (661)
++..|-.-|++++|.++..|+.+|-.+..+. ......+...+++..|..++... + +.+++++..++..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999999998888774 45667777888999999988765 3 338888888887766533
No 380
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.74 E-value=3.1e+02 Score=31.95 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhhhccCC
Q 006099 604 MGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQEARLPS 656 (661)
Q Consensus 604 i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l~~~~~~~ 656 (661)
++.|..+.++.+-++.-.|+.+|-.+.......+.-...+-..+.|.+.-+.+
T Consensus 499 ~~tLFkl~HssNFNTsVQaLmLlfQvs~~~~~vSDRyY~aLY~kLLdP~l~~s 551 (988)
T KOG2038|consen 499 MKTLFKLTHSSNFNTSVQALMLLFQVSKKNDYVSDRYYRALYRKLLDPRLMNS 551 (988)
T ss_pred hHHHHHHHhhcccchhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCcccCch
Confidence 66777777777888888888888888776654444444444445554444433
No 381
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.79 E-value=16 Score=34.67 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC-CccchhhhhhHHHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA-VTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~-l~~n~~l~~~i~~~~~~ 327 (661)
+..|.||.|..-+ ||. ..+. .++.||.|+..+...+ -.....++..|...-..
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEE----------eHH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 4689999987443 222 2233 6899999999987533 22234455555555443
No 382
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=54.64 E-value=1.3e+02 Score=34.23 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=87.7
Q ss_pred CCChHHHHHHHHHHHhccCCCcchhHhh----hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHH
Q 006099 407 TPDSRTQEHAVTALLNLSICEDNKGSIV----SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPP 482 (661)
Q Consensus 407 s~~~~i~~~A~~~L~nLs~~~~~k~~i~----~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~ 482 (661)
....+++--|+-+|.-+..+...-..+. .+..+..++..+. +++..+-.++++|.|+..++-++..+... ...
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~ 631 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LES 631 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHH
Confidence 3455666667776666655533222221 1224444444444 45677788999999998886666655544 222
Q ss_pred HHHhh---hcCC-HHHHHHHHHHHHHhhcc--cCchHHHHHcCChHHHHhcccC-----CCccHHHHHHHHHHHhcCChh
Q 006099 483 LVTLL---SEGT-QRGKKDAATALFNLCIY--QGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 483 Lv~lL---~~~~-~~~~~~a~~aL~nL~~~--~~~~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~ 551 (661)
+...+ ...+ ..++...++...|++.. ..+-. .|..+.|...+.. .+.+..-..+.+|.+|+..+.
T Consensus 632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 22222 2223 34444444444455431 11111 3444444443322 233445567888899999998
Q ss_pred hHHHHHhCCChHHHHHHhhC
Q 006099 552 GKAAIGAAEAVPVLVEVIGN 571 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~ 571 (661)
....+...-.+..++.-+++
T Consensus 708 ~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 708 SVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHhcCHHHHHHHHHH
Confidence 88888776678888877764
No 383
>PF04641 Rtf2: Rtf2 RING-finger
Probab=53.81 E-value=16 Score=36.97 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCC
Q 006099 260 DDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGH 296 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~ 296 (661)
..+.|++++++|.+||+. .-|+-|....|.+|+....
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~ 70 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKK 70 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcC
Confidence 368899999999999864 5699999999999998543
No 384
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=53.18 E-value=37 Score=32.01 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC-ccchhhhhhHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV-TPNYVLRSLIAQWC 325 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l-~~n~~l~~~i~~~~ 325 (661)
+..|.||.|..-+. | ..-+. .+++||.|+..+....- .....+...+....
T Consensus 111 ~~~y~C~~~~~r~s----------f-----deA~~-~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 111 NNYYVCPNCHVKYS----------F-----DEAME-LGFTCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred CCceeCCCCCCccc----------H-----HHHHH-hCCCCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 45789998876552 3 33344 45899999998874433 23344444444443
No 385
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=52.45 E-value=82 Score=32.26 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH--HHHHcCChHHHHh----ccc--------CCCccHHHHHHHHH
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG--KAVRAGVVPTLMH----LLT--------EPGGGMVDEALAIL 543 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~iv~~g~v~~Lv~----lL~--------~~~~~~~~~al~~L 543 (661)
=.+|+++.++++.++..+..++.+|..+...-.... .+.+.|..+.+-+ +|. .....+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 578999999999999999999999999987655443 2445665544333 333 13345666666666
Q ss_pred HHhc
Q 006099 544 AILS 547 (661)
Q Consensus 544 ~~L~ 547 (661)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 386
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=51.92 E-value=27 Score=32.36 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
+..|.||.|..-+. | ...+. .+++||.|+.++...
T Consensus 107 ~~~Y~Cp~c~~r~t----------f-----~eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRFT----------F-----NEAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEee----------H-----HHHHH-cCCcCCCCCCEeeec
Confidence 46799999874331 2 22333 579999999988643
No 387
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=50.82 E-value=15 Score=31.49 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHH
Q 006099 372 RSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQE 414 (661)
Q Consensus 372 ~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~ 414 (661)
...++.+..++. .|+....+++.|+++.|+.+|.++|.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445667777775 778888899999999999999998877643
No 388
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.66 E-value=9.8 Score=36.32 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=36.1
Q ss_pred ccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 262 FRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
..|-+|..+...-+.- +||..|-+.|+++++.+ .+.||-|+--.++
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4799999987654433 67788999999999995 7889999765544
No 389
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.54 E-value=13 Score=28.82 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=28.5
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhh
Q 006099 278 STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 317 (661)
Q Consensus 278 ~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l 317 (661)
.-.+|||..|.+..+. ..||.|+..+......|-..+
T Consensus 26 tfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 26 TFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 3458999999988765 479999999887777764433
No 390
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=50.53 E-value=69 Score=30.56 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=54.8
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
.++.++++..+.+..++..|+.++..+...+-.+ -...+|.|+.+..++++.++..|..+++.+.+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 3566777777888999999999888876643100 012589999999999999999999999999877754
No 391
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.36 E-value=58 Score=38.07 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=88.6
Q ss_pred hHHHHHHhCCHHHHHHhhCCC--------ChHHHHHHHHHHHhccCCCcchhHhhhC--------CChHHHHHHHcc---
Q 006099 388 NRVAIAEAGAIPLLVGLLSTP--------DSRTQEHAVTALLNLSICEDNKGSIVSS--------GAVPSIVHVLRI--- 448 (661)
Q Consensus 388 ~r~~i~~~g~i~~Lv~lL~s~--------~~~i~~~A~~~L~nLs~~~~~k~~i~~~--------g~i~~Lv~lL~~--- 448 (661)
....+...|++..++.+..-. ..++..+|+.+|.-+..-+..+..++.+ .+|..|+..-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 344566678888888877542 2456677888887776667666666521 245444443321
Q ss_pred -CCHHHHHHHHHHHHHcccCC-chhh-----------------------------------hhhhcCCcHHHHHhhhcC-
Q 006099 449 -GSMEARENAAATLFSLSVID-ENKV-----------------------------------TIGASGAIPPLVTLLSEG- 490 (661)
Q Consensus 449 -~~~e~~~~a~~~L~~Ls~~~-~~~~-----------------------------------~i~~~g~i~~Lv~lL~~~- 490 (661)
.+++++..|+.++.|+...+ +++. .+...++|..|+++|.-.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 26899999999999886554 2322 122237899999999854
Q ss_pred ----CHHHHHHHHHHHHHhhcccCchHHHHHc
Q 006099 491 ----TQRGKKDAATALFNLCIYQGNKGKAVRA 518 (661)
Q Consensus 491 ----~~~~~~~a~~aL~nL~~~~~~~~~iv~~ 518 (661)
...++..|+.+|..|+.++..++.+.+.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 2467889999999999999888766543
No 392
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.35 E-value=11 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.755 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHh------------CCCCCCCCCCCCc
Q 006099 282 TYERSCIEKWLEA------------GHRTCPKTQQTLT 307 (661)
Q Consensus 282 t~~r~~I~~w~~~------------~~~~cP~~~~~l~ 307 (661)
..|-.|+-+||.. |..+||+||.++-
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3567899999963 5678999999875
No 393
>PLN02189 cellulose synthase
Probab=50.19 E-value=11 Score=44.80 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=35.9
Q ss_pred ccCcCCcccc-----cCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m-----~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3899999853 355543 478889999998777789999999987664
No 394
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.65 E-value=89 Score=32.01 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=63.0
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhh--hhhhcCCcHHHHHhhh------------cCCHHHHHHHHHHH
Q 006099 437 GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKV--TIGASGAIPPLVTLLS------------EGTQRGKKDAATAL 502 (661)
Q Consensus 437 g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~------------~~~~~~~~~a~~aL 502 (661)
=.+|+++.++++.+++.+..++.+|..+...-.... .+.+.|..+.+-+.+. +.+..+...|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999876433222 2445565555544443 22345666677777
Q ss_pred HHhhcc-----cCch----HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh
Q 006099 503 FNLCIY-----QGNK----GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546 (661)
Q Consensus 503 ~nL~~~-----~~~~----~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L 546 (661)
..|... ...+ ..++..|++..+...-......++...+..+..+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~ 251 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPI 251 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHH
Confidence 777432 1111 2344444444433333222455555555444433
No 395
>PHA03096 p28-like protein; Provisional
Probab=49.17 E-value=11 Score=38.53 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=29.4
Q ss_pred ccCcCCccccc-CC-------eecCCCccccHHHHHHHHHhC--CCCCCCCCC
Q 006099 262 FRCPISLELMK-DP-------VIVSTGQTYERSCIEKWLEAG--HRTCPKTQQ 304 (661)
Q Consensus 262 f~CpIc~~~m~-dP-------v~~~cg~t~~r~~I~~w~~~~--~~~cP~~~~ 304 (661)
-.|.||++.-. .| ....|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 45888887433 22 223699999999999999743 345666654
No 396
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.16 E-value=26 Score=33.74 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=36.3
Q ss_pred cCcCCccccc--CCeecCCCccccHHHHHHHHHh-------CCCCCCCCCCCCc
Q 006099 263 RCPISLELMK--DPVIVSTGQTYERSCIEKWLEA-------GHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~m~--dPv~~~cg~t~~r~~I~~w~~~-------~~~~cP~~~~~l~ 307 (661)
-|.+|...+. |-+.+.|-|.|...|+..|-.. .+..||.|.+++-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4888888774 7788999999999999999863 3457999988753
No 397
>PLN02436 cellulose synthase A
Probab=47.64 E-value=13 Score=44.40 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=35.8
Q ss_pred ccCcCCcccc-----cCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m-----~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4899999753 355543 478889999998777789999999987654
No 398
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.36 E-value=18 Score=31.05 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHH
Q 006099 496 KDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVD 537 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~ 537 (661)
...+..+..|+..++--..+++.|+++.|+++|.+.+.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 456778889999998888999999999999999988776543
No 399
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=47.04 E-value=3.5e+02 Score=28.07 Aligned_cols=197 Identities=9% Similarity=0.071 Sum_probs=117.6
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch-----hhhhhhc-CCcHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-----KVTIGAS-GAIPPLVTLLSEGTQRGKKDAATALFNL 505 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~-----~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 505 (661)
.+..+|.+..++..|.....+.+..++.+..++-..+-+ ...+... ..+..|+.--.. .+++. .+|+.+..=
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~ia-L~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIA-LTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHH-HHHHHHHHH
Confidence 455799999999999999999999999888887543311 1111111 222222222000 12222 223333222
Q ss_pred hcccCc-hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh-cCChhhHHHHHhCC---ChHH-HHHHhhCCCHHHHHH
Q 006099 506 CIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL-SSHPEGKAAIGAAE---AVPV-LVEVIGNGSPRNREN 579 (661)
Q Consensus 506 ~~~~~~-~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L-~~~~~~~~~i~~~g---~i~~-Lv~lL~~~~~~~ke~ 579 (661)
|...+. ...+....-+.....+...++-++...|..+...+ ..+.....++...+ ..+. --.++.+++--++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 333332 33344566667777777767777888888888755 44444444444432 2233 555777888888888
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 580 AAAVLVHLCAGDQ---QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 580 A~~~L~~L~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+...|..+....+ .....+.....+..++.+++..+...+-.|=...+.+.
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence 8888888765544 22344444566788888888887777777766665554
No 400
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.14 E-value=18 Score=41.18 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCCCCCccCcCCcccccCCe----ecC---CCccccHHHHHHHHH
Q 006099 256 PVIPDDFRCPISLELMKDPV----IVS---TGQTYERSCIEKWLE 293 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv----~~~---cg~t~~r~~I~~w~~ 293 (661)
...++.-.|++|---+.+|+ +.+ |++.+|..||..|.+
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~D 135 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCND 135 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHH
Confidence 34456678999988888865 334 899999999999998
No 401
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.07 E-value=15 Score=43.89 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=35.6
Q ss_pred ccCcCCcccc-----cCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m-----~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3799998743 355543 578889999998777789999999987654
No 402
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=45.05 E-value=8.4 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 278 STGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 278 ~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
...|-.|..|+...+. ....||.|+.+++..
T Consensus 18 C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLS-RSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-S-SSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhc-cccCCCcccCcCccc
Confidence 3468889999988776 667899999988753
No 403
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=43.92 E-value=4.9e+02 Score=28.80 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh
Q 006099 409 DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL 487 (661)
Q Consensus 409 ~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 487 (661)
..++|..+...|..+......+..+...- +...+.. ..++-...-..+|..|+.+...-. ..+.+..+.|...+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R~~----fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~-~~~~~i~~~L~~wl 116 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMRAE----FFRDISDPSNDDDFDLRLEALIALTDNGRDID-FFEYEIGPFLLSWL 116 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHHHH----HHHHHhcCCCchhHHHHHHHHHHHHcCCcCch-hcccchHHHHHHHH
Confidence 46788888888877766544332222222 2222232 234444455666777765543332 23556777777666
Q ss_pred h
Q 006099 488 S 488 (661)
Q Consensus 488 ~ 488 (661)
.
T Consensus 117 ~ 117 (464)
T PF11864_consen 117 E 117 (464)
T ss_pred H
Confidence 4
No 404
>PLN02195 cellulose synthase A
Probab=43.25 E-value=18 Score=42.90 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=35.4
Q ss_pred cCcCCccc-----ccCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 263 RCPISLEL-----MKDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 263 ~CpIc~~~-----m~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.|.||++- +-+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 59999873 3466553 588889999997777789999999987654
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=22 Score=41.33 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=26.8
Q ss_pred CccCcCCcccc-cCCee-cCCCccccHHHHHHHHH
Q 006099 261 DFRCPISLELM-KDPVI-VSTGQTYERSCIEKWLE 293 (661)
Q Consensus 261 ~f~CpIc~~~m-~dPv~-~~cg~t~~r~~I~~w~~ 293 (661)
.-.|.+|...+ ..|.. .+|||.|.+.||.+...
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 45799998744 56765 59999999999999876
No 406
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.41 E-value=1.1e+02 Score=29.25 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=51.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhcc
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLS 424 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs 424 (661)
.++.+++...+.+...+..|+..|....+.+--|-. -.+|.|+.+..++++.++..|...+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 456677777788999999999999887754433322 25899999999999999999999988875
No 407
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=42.36 E-value=6.2e+02 Score=29.60 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=82.6
Q ss_pred hHHHHHHHHHc-c----C---CHHHHHHHHHHHHHHHh--hChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhc
Q 006099 354 TKIEILLCKLT-S----G---SPEDQRSAAGEIRLLAK--RNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNL 423 (661)
Q Consensus 354 ~~i~~Lv~~L~-s----~---~~~~~~~Al~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nL 423 (661)
+.+++++..|. + . ++.....|++.+.++.. .-+.....+.+.=.++.++..++++.--.+..||..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 67788888873 1 1 23333444444444432 1222233344444677777888888888888999988888
Q ss_pred cCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhc
Q 006099 424 SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSE 489 (661)
Q Consensus 424 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~ 489 (661)
+.+ -+..-....+.+.....|++.+-.++..|+-+|.-+-.++.....+.++ +.++.|+.+-+.
T Consensus 488 eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 488 EED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred HHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 544 2333333456677778888877777888888887777766666666554 556666555443
No 408
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=42.35 E-value=15 Score=39.83 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=45.3
Q ss_pred hCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 570 GNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 570 ~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
...++++++.|..++.+++.+....+..+-....-..++.++..+.++.-+.+..++..+-+
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 35679999999999999987754444343444556677788888888888888877777664
No 409
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.18 E-value=1.6e+02 Score=25.29 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhC------CCChHHHHHHHHHHHh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLS------TPDSRTQEHAVTALLN 422 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~------s~~~~i~~~A~~~L~n 422 (661)
...+..|.+.|.+.++.++..|+..|..+.+.. ......+....++..++++.. ..+..++..+...+..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 468899999999999999999999999998754 344556666666666655311 1267788887766544
No 410
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.05 E-value=19 Score=37.51 Aligned_cols=47 Identities=30% Similarity=0.471 Sum_probs=36.1
Q ss_pred ccCcCCcccccC---CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 262 FRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 262 f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+.|.|+++.|.+ |++.|-|++|-...|..|-...+-.||.++..+..
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 567788888863 77889999999999988877444788888776653
No 411
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=41.91 E-value=75 Score=28.67 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=55.3
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcC-ChH---HHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNG-TDR---GKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~---~k~~A~~lL~~L~~~ 632 (661)
++..|-.-|.+++|.++..|+.+|-.+..+.+ .....+....++..|..++.+. ... +++++..+|......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999888765 5556666667899999988754 333 788888888776643
No 412
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=18 Score=38.82 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=31.4
Q ss_pred CccCcCCc-ccccC---CeecCCCccccHHHHHHHHH-----hCCCCCCC--CCCCCc
Q 006099 261 DFRCPISL-ELMKD---PVIVSTGQTYERSCIEKWLE-----AGHRTCPK--TQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~-~~m~d---Pv~~~cg~t~~r~~I~~w~~-----~~~~~cP~--~~~~l~ 307 (661)
...|+||. +.+.. -.+..|+|-||..|..+++. .....||- |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 46799999 43322 12467999999999999997 23356764 444444
No 413
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=41.18 E-value=2.5 Score=32.95 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=21.0
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
+..||.|...|.. .-|+.+|..|-..+. -...||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECccccccce--ecccCCCcccHHH
Confidence 3579999988742 226777777754322 2357999998875
No 414
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.89 E-value=29 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=36.4
Q ss_pred CccCcCCcccc-----cCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m-----~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35799998743 356553 578889999997777789999999987664
No 415
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.72 E-value=13 Score=27.07 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=12.0
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 46899999999974
No 416
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.47 E-value=22 Score=23.31 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q 006099 295 GHRTCPKTQQT 305 (661)
Q Consensus 295 ~~~~cP~~~~~ 305 (661)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44578888753
No 417
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=40.36 E-value=14 Score=37.67 Aligned_cols=26 Identities=12% Similarity=0.537 Sum_probs=16.7
Q ss_pred CccCcCCccccc-CC--eecCCCccccHH
Q 006099 261 DFRCPISLELMK-DP--VIVSTGQTYERS 286 (661)
Q Consensus 261 ~f~CpIc~~~m~-dP--v~~~cg~t~~r~ 286 (661)
.|.||+|...|. ++ ..-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999885 22 223446777543
No 418
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=19 Score=33.33 Aligned_cols=31 Identities=19% Similarity=0.741 Sum_probs=24.3
Q ss_pred cCCCccccHHHHHHHHHh-----C-----CCCCCCCCCCCc
Q 006099 277 VSTGQTYERSCIEKWLEA-----G-----HRTCPKTQQTLT 307 (661)
Q Consensus 277 ~~cg~t~~r~~I~~w~~~-----~-----~~~cP~~~~~l~ 307 (661)
+.||+.|.+-|+..|++. . -..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 469999999999999982 1 135999988765
No 419
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=39.81 E-value=24 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.552 Sum_probs=29.8
Q ss_pred CCCccCcCCcccccCCeec-CCC-----ccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 259 PDDFRCPISLELMKDPVIV-STG-----QTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~-~cg-----~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
++.++|||+++.-..-|.+ ..+ .-|+...+.+.+..| ..=|.+|.+++...
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sM 94 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSM 94 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhh
Confidence 5678999999998888875 222 359999999988854 34588888776443
No 420
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.38 E-value=15 Score=33.58 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=22.7
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHH-hCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE-AGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~-~~~~~cP~~~~~l~~ 308 (661)
...|.||-|..-+. -.-.....+ .+.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 45799998775543 111111111 255899999998853
No 421
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.24 E-value=1.9e+02 Score=27.58 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhccCCCcc------hhHhh-h-----C-CChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhh--
Q 006099 412 TQEHAVTALLNLSICEDN------KGSIV-S-----S-GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA-- 476 (661)
Q Consensus 412 i~~~A~~~L~nLs~~~~~------k~~i~-~-----~-g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~-- 476 (661)
+|..|+.+|..+++.-+. +..+. + . .....+.-++.+.++.+|..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456667777666654221 22222 1 1 2333344455667899999999999888644311111111
Q ss_pred ---cCCc---------------HHHHHhhhcC-CHHHHHHHHHHHHHhhcccCchHHHHHcCC----hHHHHhcccCCCc
Q 006099 477 ---SGAI---------------PPLVTLLSEG-TQRGKKDAATALFNLCIYQGNKGKAVRAGV----VPTLMHLLTEPGG 533 (661)
Q Consensus 477 ---~g~i---------------~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~----v~~Lv~lL~~~~~ 533 (661)
.+.+ ..|+..|..+ +.......+++|..|....+-.. ...|. +..+..++.+.|.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCC
Confidence 1122 3344444443 55667788888888877655322 12343 4445556666889
Q ss_pred cHHHHHHHHHHHhcCCh
Q 006099 534 GMVDEALAILAILSSHP 550 (661)
Q Consensus 534 ~~~~~al~~L~~L~~~~ 550 (661)
+++..++.++..+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999998776654
No 422
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=39.18 E-value=23 Score=35.79 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=33.9
Q ss_pred CccCcCCccccc-CC-e-ecCCCccccHHHHHHHHHh----------------------CCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMK-DP-V-IVSTGQTYERSCIEKWLEA----------------------GHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~-dP-v-~~~cg~t~~r~~I~~w~~~----------------------~~~~cP~~~~~l~ 307 (661)
.-.|.||+.-|. .| . .++|.|-+...|+.+++.. ....||+|+.++.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 457999998775 35 3 4689998888888887752 1245899987664
No 423
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.06 E-value=2.3e+02 Score=27.00 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc-cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh
Q 006099 478 GAIPPLVTLLSEGTQRGKKDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 550 (661)
Q Consensus 478 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 550 (661)
-.++.+++=|.+.+..-+..|...+..|... ...+..=+=...|.+|-..|.+.++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3445555555555656666777777777666 444433334567888888898899999999999999985543
No 424
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.69 E-value=5.2e+02 Score=27.62 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHhccCCCcchhHhhhCC---ChHHHHHHHccC--CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHH
Q 006099 409 DSRTQEHAVTALLNLSICEDNKGSIVSSG---AVPSIVHVLRIG--SMEARENAAATLFSLSVIDENKVTIGASGAIPPL 483 (661)
Q Consensus 409 ~~~i~~~A~~~L~nLs~~~~~k~~i~~~g---~i~~Lv~lL~~~--~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L 483 (661)
+..+-.+|+.+|+.+..+++.-..+-..- .+...+..|.++ +..+.....++|..=.. ...+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f----~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF----SPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----CCcccchhhHHHH
Confidence 56777889998888876544333332211 344555566444 34555566666554322 2334444455555
Q ss_pred HHhhhc-----CCHHHHHHHHHHHHHhhcccCchHHHHH-cC-ChHHHHhcccCCCccHHHHHHHHHHHh
Q 006099 484 VTLLSE-----GTQRGKKDAATALFNLCIYQGNKGKAVR-AG-VVPTLMHLLTEPGGGMVDEALAILAIL 546 (661)
Q Consensus 484 v~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~iv~-~g-~v~~Lv~lL~~~~~~~~~~al~~L~~L 546 (661)
+..+.. ++..+....+.++.+|...... .|+. .+ -++.++..+-+....++..|..++..+
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 555542 3455667778888888765433 2332 22 566777766666666666666655544
No 425
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=37.22 E-value=31 Score=41.67 Aligned_cols=42 Identities=26% Similarity=0.640 Sum_probs=28.7
Q ss_pred CCCCCCCccCcCCc--ccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 255 APVIPDDFRCPISL--ELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 255 ~~~~p~~f~CpIc~--~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
..++|.++.||-|. +...|+- ...| |+ -...+||+|+.++..
T Consensus 908 VNPL~PHY~Cp~Cky~Ef~~d~s-vgsG--fD---------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 908 VNPLPPHYLCPECKYSEFIDDGS-VGSG--FD---------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred cCCCCccccCCCCceeeeecCCC-cCCC--CC---------CCCCCCCcCCCcccc
Confidence 35678899999997 5666652 2233 32 256789999998864
No 426
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=37.14 E-value=31 Score=35.49 Aligned_cols=49 Identities=12% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHh-CCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-GHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~-~~~~cP~~~~~l~ 307 (661)
.++-.|-||-+-..--..+||||..|..|--+...- ....||.|+....
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 456789999998877778999999999997664432 3467999987654
No 427
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=36.85 E-value=1.3e+02 Score=31.74 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=63.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-------ChHHHHHHHHHHHhccCC
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-------DSRTQEHAVTALLNLSIC 426 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-------~~~i~~~A~~~L~nLs~~ 426 (661)
.....+.+.+.+.+...+..|+..|+.=. .- ...+|.++.++... +.......+.....|..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~----gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDP----GL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCC----Cc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 34556666666667777777776665321 11 13578888887642 455555666666666665
Q ss_pred CcchhHhhhCCChHHHHHHHcc----------CCHHHHHHHHHHHHHcccC
Q 006099 427 EDNKGSIVSSGAVPSIVHVLRI----------GSMEARENAAATLFSLSVI 467 (661)
Q Consensus 427 ~~~k~~i~~~g~i~~Lv~lL~~----------~~~e~~~~a~~~L~~Ls~~ 467 (661)
+...-...-.-.++.++.++-. ....+|+.|+.+|..++..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 4433322223367777766621 2358999999999998743
No 428
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.84 E-value=2.7e+02 Score=25.17 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHH-HHHhhCC---CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPL-LVGLLST---PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~s---~~~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|.+ .++.++..|+..|..+.+.. ......|+..+++.. |++++.. .+..++..++..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 6789999999985 58999999999998888643 345667788899987 9999963 245788888888877753
No 429
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.42 E-value=15 Score=26.40 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=9.5
Q ss_pred CCCCCCCccCcCCcc
Q 006099 255 APVIPDDFRCPISLE 269 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~ 269 (661)
..++|+++.||+|.-
T Consensus 28 F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 28 FEDLPDDWVCPVCGA 42 (47)
T ss_dssp GGGS-TT-B-TTTSS
T ss_pred HHHCCCCCcCcCCCC
Confidence 347899999999974
No 430
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.34 E-value=22 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=9.5
Q ss_pred cccHHHHHHHHHh
Q 006099 282 TYERSCIEKWLEA 294 (661)
Q Consensus 282 t~~r~~I~~w~~~ 294 (661)
.|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999983
No 431
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.79 E-value=42 Score=30.62 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=12.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHH
Q 006099 604 MGPLVDLAQNGTDRGKRKAAQLLER 628 (661)
Q Consensus 604 i~~L~~ll~~~~~~~k~~A~~lL~~ 628 (661)
+.+|+.++.+.++.+...|+..|++
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 5555556555555555555555554
No 432
>PLN03205 ATR interacting protein; Provisional
Probab=34.82 E-value=1.4e+02 Score=31.78 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=75.2
Q ss_pred hHHHHhcccCCCccHHHHHHHHHHH----hcCChhhHHHHHhCCChHHHHHHhh-----CCCHHHHHHHHHHHHHHhcCC
Q 006099 521 VPTLMHLLTEPGGGMVDEALAILAI----LSSHPEGKAAIGAAEAVPVLVEVIG-----NGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 521 v~~Lv~lL~~~~~~~~~~al~~L~~----L~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~ke~A~~~L~~L~~~~ 591 (661)
+.+|+++..-++..++..++++|.. ++.+..--.+-.+.+.+. |.+++. +....++..|+.++.-+...+
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 4566666666777778888777664 444433233344445443 334432 334667888998887776554
Q ss_pred HH--HHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHHHHHhhHHHHHH
Q 006099 592 QQ--YLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFIEQQKQ 638 (661)
Q Consensus 592 ~~--~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~L~~~~~~~~~ 638 (661)
.. .+..+...-++..+-.+++. +...+++.|.-+|..|-.....-..
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~i 453 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDR 453 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHH
Confidence 43 34455555678888888875 4788999999999988776654333
No 433
>PLN02400 cellulose synthase
Probab=34.54 E-value=20 Score=43.07 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=35.5
Q ss_pred ccCcCCcccc-----cCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELM-----KDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m-----~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4899998743 355543 578889999997767789999999987654
No 434
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.29 E-value=5.1e+02 Score=26.23 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
+.++.|.+.|+..++..+ .+...|+. ..+++...||.|+..= ++..+-..++..|.+|..
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~---------~~iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGE---------WNIVQKDLIPILISYK--DDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHH---------hchhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCC
Confidence 567777777776554332 22222211 1334445555544332 367888899999999975
No 435
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=24 Score=35.22 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCccCcCCcccccCCeecCC----CccccHHHHHHHHHh
Q 006099 260 DDFRCPISLELMKDPVIVST----GQTYERSCIEKWLEA 294 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~c----g~t~~r~~I~~w~~~ 294 (661)
.-++|-+|.+-+.|-..+-| .|.||-.|-.+.++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 34899999999999877655 699999998887763
No 436
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.17 E-value=2.6e+02 Score=31.06 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=70.4
Q ss_pred cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH----HHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCC-
Q 006099 518 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK----AAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGD- 591 (661)
Q Consensus 518 ~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~----~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~- 591 (661)
.++|..+++.+. .+.+.+--++++. +..++.. ..+.+.+.++.|+.+|. ..++..+.+|+.+|..|..-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 567777777775 4445555555554 3333333 34456799999999997 456778889988877764321
Q ss_pred ------------HHHHHHHHHcCCHHHHHHhhh--cCChHHHHHHHHHHHHHHhh
Q 006099 592 ------------QQYLAEAKELGVMGPLVDLAQ--NGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 592 ------------~~~~~~~~~~g~i~~L~~ll~--~~~~~~k~~A~~lL~~L~~~ 632 (661)
..-...+.....+..|+..+- .+...+.....-++..+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 123445556667888887776 44555556666666777554
No 437
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=32.06 E-value=31 Score=29.48 Aligned_cols=20 Identities=45% Similarity=0.938 Sum_probs=15.4
Q ss_pred CCeecC---CCccccHHHHHHHHH
Q 006099 273 DPVIVS---TGQTYERSCIEKWLE 293 (661)
Q Consensus 273 dPv~~~---cg~t~~r~~I~~w~~ 293 (661)
.||.+. |+ |.||.|+++|..
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 677653 44 689999999986
No 438
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=31.69 E-value=1.7e+02 Score=23.36 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=48.3
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHH
Q 006099 27 GTVKKQYCNLARRLKLLTPMFEEIKESKEAIPEETSKALVSLKEALASAKELLRF-GSEGSKIYLVL 92 (661)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~leel~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~-c~~~sk~~~~~ 92 (661)
..++++...|++.+..+.++++.|...++ +++.-...+......-++++.|+.. .++|.+.|-.+
T Consensus 2 ~~L~~~r~~Lv~~l~~~~~ild~L~~~~v-lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 2 ELLRKNRQELVEDLDDLDDILDHLLSRGV-LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHHHTHHHHHHHSSHHHHHHHHHHHTTS-SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHhHHHHHHHhCcHHHHHHHHHHCCC-CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 35678888899999889999999987654 5666666666666677889999888 46777665543
No 439
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.68 E-value=8e+02 Score=28.80 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcchhHhhhCCChHHHHH
Q 006099 366 GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVH 444 (661)
Q Consensus 366 ~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~ 444 (661)
.=++++.+++..+..+....|+.-. ..+..||.-|.+++..+-..|...|.+|.. ++.-|..+ +..|.+
T Consensus 316 ~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer 385 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-----IDEIER 385 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHH
Confidence 4457889999999998776666433 345678888888888888888888888854 45445443 455667
Q ss_pred HHccC--CHHHHHHHHHHHHHccc
Q 006099 445 VLRIG--SMEARENAAATLFSLSV 466 (661)
Q Consensus 445 lL~~~--~~e~~~~a~~~L~~Ls~ 466 (661)
++-.. +..+..+|+-.|..+..
T Consensus 386 ~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 386 LAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHcccCccccceeehhhhhhhhHh
Confidence 66554 34555666666655443
No 440
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.65 E-value=31 Score=32.17 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=9.1
Q ss_pred CccCcCCcccccC
Q 006099 261 DFRCPISLELMKD 273 (661)
Q Consensus 261 ~f~CpIc~~~m~d 273 (661)
.+.||+|+.+..+
T Consensus 134 ~~vC~vCGy~~~g 146 (166)
T COG1592 134 VWVCPVCGYTHEG 146 (166)
T ss_pred EEEcCCCCCcccC
Confidence 6889998655543
No 441
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=31.24 E-value=23 Score=32.48 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.5
Q ss_pred CCccCcCCcccccCCeecCCC
Q 006099 260 DDFRCPISLELMKDPVIVSTG 280 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg 280 (661)
++.+||||++.-.+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999987653
No 442
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=30.98 E-value=3.7e+02 Score=25.53 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcccCchH------HHH------HcCChHHHHh-cccCCCccHHHHHHHHHHHhcCChhhHHHHHh--
Q 006099 494 GKKDAATALFNLCIYQGNKG------KAV------RAGVVPTLMH-LLTEPGGGMVDEALAILAILSSHPEGKAAIGA-- 558 (661)
Q Consensus 494 ~~~~a~~aL~nL~~~~~~~~------~iv------~~g~v~~Lv~-lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~-- 558 (661)
++..|+.+|..++...+.|. .++ ..+.-+.|+. ++.++++.++..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 45566666666666533332 111 1223334444 45778899999999999877765432222221
Q ss_pred ---CC---------------ChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHhhhcCChHH
Q 006099 559 ---AE---------------AVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQY-LAEAKELGVMGPLVDLAQNGTDRG 618 (661)
Q Consensus 559 ---~g---------------~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~ 618 (661)
.+ .=..|+..|+. .++......+.+|..+..+.|=. ...-.-..++..+..++.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 00 11234444443 45666778888888888877722 222122235566667777889999
Q ss_pred HHHHHHHHHHHHhhH
Q 006099 619 KRKAAQLLERMSRFI 633 (661)
Q Consensus 619 k~~A~~lL~~L~~~~ 633 (661)
+..+..++..+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999888876543
No 443
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.85 E-value=2.3e+02 Score=24.27 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=49.5
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhh------hcCChHHHHHHHHHHHHHH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLA------QNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll------~~~~~~~k~~A~~lL~~L~ 630 (661)
++..|..-|.+.++..+..|+.+|-.+..+.+ .+...+....++..++.+. ...+..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45566667778899999999999999987765 4556666666655555431 1226788999998887654
No 444
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.62 E-value=45 Score=39.65 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCccCcCCcccccCCeecCCCc-----cccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~-----t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (661)
.....||-|+.......-..||. .||..| .+.. +...||.|+..+..... ....++.+...-.+.
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~s~-~~i~l~~~~~~A~~~ 693 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPYSK-RKIDLKELYDRALEN 693 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCccce-EEecHHHHHHHHHHH
Confidence 34578999988763332334774 488888 2222 45789999988764432 223344444444433
No 445
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=30.49 E-value=64 Score=29.49 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=19.6
Q ss_pred CcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 479 AIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 479 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
-|.+|+++|.+.+..+...|+.+|.+-..-
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 367888888887888888888888875443
No 446
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=30.19 E-value=47 Score=34.48 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=35.5
Q ss_pred CccCcCCcccccC----CeecCCC-----ccccHHHHHHHHH-hCCCCCCCCCCCCcC
Q 006099 261 DFRCPISLELMKD----PVIVSTG-----QTYERSCIEKWLE-AGHRTCPKTQQTLTS 308 (661)
Q Consensus 261 ~f~CpIc~~~m~d----Pv~~~cg-----~t~~r~~I~~w~~-~~~~~cP~~~~~l~~ 308 (661)
+..|-||...... |...+|. ....|.|++.|+. +++..|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4889999885532 5666664 2356999999998 577899999876653
No 447
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=29.23 E-value=61 Score=27.47 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHH---cCCC
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA---NGIE 331 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~---~~~~ 331 (661)
...+|..|.||-|.+. .-||-+ ++ ..++..||.|+...... +.+-..--.....|... ..+.
T Consensus 15 k~klpt~f~CP~Cge~-~v~v~~--~k-----------~~~h~~C~~CG~y~~~~-V~~l~epIDVY~~wiD~~~eg~i~ 79 (99)
T PRK14892 15 KPKLPKIFECPRCGKV-SISVKI--KK-----------NIAIITCGNCGLYTEFE-VPSVYDEVDVYNKFIDLYLEGKIE 79 (99)
T ss_pred ccCCCcEeECCCCCCe-Eeeeec--CC-----------CcceEECCCCCCccCEE-CCccccchhhHHHHHHHHHhcCCC
Confidence 3456788999999953 322222 11 13677899998765432 22212222445667654 4444
Q ss_pred CCCC
Q 006099 332 PPKR 335 (661)
Q Consensus 332 ~p~~ 335 (661)
.|..
T Consensus 80 ~~~~ 83 (99)
T PRK14892 80 IKER 83 (99)
T ss_pred cccc
Confidence 4433
No 448
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.15 E-value=1.8e+02 Score=32.13 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhh-HHHHHHhCCHHHHHHhhCCC--ChHHHHHHHHHHHhc
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADN-RVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNL 423 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nL 423 (661)
.+.+..|.++|.+.++.+|..|+..|..+.+..-.. ...|++.++++-+|...+.. +..+|+.++..|-.-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 478999999999988999999999888777644433 44788899999999988764 778999888877544
No 449
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.12 E-value=1.5e+03 Score=29.98 Aligned_cols=261 Identities=11% Similarity=0.006 Sum_probs=134.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChhhHH---HHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCCCh
Q 006099 364 TSGSPEDQRSAAGEIRLLAKRNADNRV---AIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSGAV 439 (661)
Q Consensus 364 ~s~~~~~~~~Al~~L~~L~~~~~~~r~---~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i 439 (661)
.+.+..+...|+..|+.++-..-+... .=.+..++.++..++.+ .+.++++..+.++.++..... ..| .. |.
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GW 1222 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GW 1222 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-Cc
Confidence 445677888888888888753222111 12234567777776664 578999999999988753211 112 22 67
Q ss_pred HHHHHHHcc----CCHHHHHHHHHHHHHcccCCchhhhhhh--c----CCcHHHHHhhhcC-CHHHHHHHHHHHHHhhcc
Q 006099 440 PSIVHVLRI----GSMEARENAAATLFSLSVIDENKVTIGA--S----GAIPPLVTLLSEG-TQRGKKDAATALFNLCIY 508 (661)
Q Consensus 440 ~~Lv~lL~~----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~--~----g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~ 508 (661)
+.+..+|.. .++.+...|-.++..+... +-..+.. . ..|..|..+.+.. +.++-..|+..|++++..
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 777777752 3466666676666655422 1111111 1 3334444444333 244555666666654211
Q ss_pred c----------------------------CchH-----HHHHcCChHHHH---hcccCCCccHHHHHHHHHHHhcC-C--
Q 006099 509 Q----------------------------GNKG-----KAVRAGVVPTLM---HLLTEPGGGMVDEALAILAILSS-H-- 549 (661)
Q Consensus 509 ~----------------------------~~~~-----~iv~~g~v~~Lv---~lL~~~~~~~~~~al~~L~~L~~-~-- 549 (661)
- +.-. ......-++.|. .+..+...+++..|+.+|..+-. +
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 0000 000112333333 33445778899999998874432 2
Q ss_pred ---hhhHHHHHhCCChHHHHHHhhCC-----------------------CHHHHHHHHHHHHHHhcCCHHHHHHH--HHc
Q 006099 550 ---PEGKAAIGAAEAVPVLVEVIGNG-----------------------SPRNRENAAAVLVHLCAGDQQYLAEA--KEL 601 (661)
Q Consensus 550 ---~~~~~~i~~~g~i~~Lv~lL~~~-----------------------~~~~ke~A~~~L~~L~~~~~~~~~~~--~~~ 601 (661)
++....+.. +++-+++..++.. +....+-+..+|..++.--..+-..+ .-.
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333 4566666655421 01123333444444433212222222 122
Q ss_pred CCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 602 GVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 602 g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
+++..|...+...+...-+.+..+|..|-.
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 455566666667778888888887777754
No 450
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=28.92 E-value=5.8e+02 Score=25.21 Aligned_cols=128 Identities=15% Similarity=0.032 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccC-------------CHH-H----HHHHHHHHHHcccCCchhh
Q 006099 411 RTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIG-------------SME-A----RENAAATLFSLSVIDENKV 472 (661)
Q Consensus 411 ~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-------------~~e-~----~~~a~~~L~~Ls~~~~~~~ 472 (661)
.-...++..+..|...+++-..+...+.++.+.+.|..- +++ + ...-...++.||....+..
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 334456666667776667666666888888888887532 111 1 1222356677888777777
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
.+-+.+.+..+.+++...+. -.....+|.+|-...++..+.+ |-+.|..++..++..|...|..+.
T Consensus 159 lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~i-------LsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRII-------LSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 77777999999998877533 1222235556644444333332 345566777888888888877654
No 451
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.49 E-value=96 Score=26.99 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=33.7
Q ss_pred ChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhC
Q 006099 520 VVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA 559 (661)
Q Consensus 520 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~ 559 (661)
+++.|+.-|.+++.++...|+.+|...|..+.....++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5778999999999999999999999999988666666543
No 452
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=12 Score=29.68 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred ccCcCCcccccC
Q 006099 262 FRCPISLELMKD 273 (661)
Q Consensus 262 f~CpIc~~~m~d 273 (661)
+.||+|.--|..
T Consensus 2 llCP~C~v~l~~ 13 (88)
T COG3809 2 LLCPICGVELVM 13 (88)
T ss_pred cccCcCCceeee
Confidence 469999977754
No 453
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=28.27 E-value=1.3e+02 Score=30.96 Aligned_cols=58 Identities=29% Similarity=0.346 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC--------------hhhHHHHHHhCCHHHHHHhhCC
Q 006099 350 PAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN--------------ADNRVAIAEAGAIPLLVGLLST 407 (661)
Q Consensus 350 ~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~--------------~~~r~~i~~~g~i~~Lv~lL~s 407 (661)
......+..++..|.+++...+..|+.+|..++.+. ..|...+.+.|+++.|+.+|+.
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345688999999999999999999999999887542 2455667788999999998864
No 454
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.19 E-value=51 Score=36.28 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=29.7
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~~ 293 (661)
.....|.||.+-... .+.+.|||-||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 456889999988875 55679999999999999887
No 455
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.08 E-value=1.8e+02 Score=30.58 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcccCCchhhhhhhcC--CcHHHHHhhhcC---CHHHHHHHHHHHHHhhcccCchHHHH
Q 006099 452 EARENAAATLFSLSVIDENKVTIGASG--AIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKGKAV 516 (661)
Q Consensus 452 e~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~iv 516 (661)
.+|-.|..++..+.........+...+ .+..|+++++.+ ...++..|+.+|..++........++
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346667777777776666666777665 999999999875 46788999999999998665544443
No 456
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=27.83 E-value=3e+02 Score=29.47 Aligned_cols=174 Identities=16% Similarity=0.077 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHHHhccCCCc---chhHhhhCCChHHHHHHHc----c-------CCHHHHHHHHHHHHHcccCCchh
Q 006099 406 STPDSRTQEHAVTALLNLSICED---NKGSIVSSGAVPSIVHVLR----I-------GSMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 406 ~s~~~~i~~~A~~~L~nLs~~~~---~k~~i~~~g~i~~Lv~lL~----~-------~~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
...+...+..|...|.+.-...+ ....+ ..-++.+++.++ + .+.++..+|..+|..+..+++-.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 34556666777777776533222 12222 233444554442 1 14577888999999888766655
Q ss_pred hhhhhcC---CcHHHHHhhhcCC--HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-----CCccHHHHHHH
Q 006099 472 VTIGASG---AIPPLVTLLSEGT--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----PGGGMVDEALA 541 (661)
Q Consensus 472 ~~i~~~g---~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~ 541 (661)
..+...- .+...+..+.+++ ..+....+++| +.. .-...++....+..++..+.. ++..+....+.
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~l---s~Q-~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCL---SDQ-KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HcC-CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 5554441 3455555554432 22333333333 221 111123334444445444432 45677788888
Q ss_pred HHHHhcCChhhHHHHHhC--CChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 542 ILAILSSHPEGKAAIGAA--EAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 542 ~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
++.+|...... .|+.. --++.++..+-+....++..|..++..+
T Consensus 157 i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 157 IYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 88888764332 23322 2577777766666666777666555554
No 457
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=27.41 E-value=6e+02 Score=29.72 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=72.4
Q ss_pred cCCcHHHHHhhhc--------CCHHHHHHHHHHHHHhhc--ccC-chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHH
Q 006099 477 SGAIPPLVTLLSE--------GTQRGKKDAATALFNLCI--YQG-NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 545 (661)
Q Consensus 477 ~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~nL~~--~~~-~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~ 545 (661)
.|.++.+++.|.. .+..-.+.|++.+.++.. ... .-..+.+.=+++.++..++++..-++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 4788888888832 134455677777777765 222 23345566678888889999889999999999998
Q ss_pred hcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 546 LSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 546 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
+.. +-+...+-..+.......+++.+-.++-.|+-+|.-+..+.
T Consensus 487 ~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 832 22211111123444555666666667777777777666554
No 458
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.20 E-value=42 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=29.0
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.-.|-||..-...| |+.||..|-.+ ...|.+|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 34799999877654 88999999543 3479999998743
No 459
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.19 E-value=1.6e+02 Score=30.96 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCCCcchhHhhhCC--ChHHHHHHHccC---CHHHHHHHHHHHHHcccCCchhhhhhh-------cC
Q 006099 411 RTQEHAVTALLNLSICEDNKGSIVSSG--AVPSIVHVLRIG---SMEARENAAATLFSLSVIDENKVTIGA-------SG 478 (661)
Q Consensus 411 ~i~~~A~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~-------~g 478 (661)
.++-.|+..|..+..+......+...+ .+..|+++++.+ ...++..|..+|..++........+.. +|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456667777777766666667777555 999999999865 468899999999999886543222222 26
Q ss_pred CcHHHHHh
Q 006099 479 AIPPLVTL 486 (661)
Q Consensus 479 ~i~~Lv~l 486 (661)
.+..+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666543
No 460
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=27.01 E-value=8e+02 Score=26.24 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=79.0
Q ss_pred hcCCcHHHHHhhhcCC-HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcc-cC--CCccHHHHHHHHHHHhcCChh
Q 006099 476 ASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLL-TE--PGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 476 ~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-~~--~~~~~~~~al~~L~~L~~~~~ 551 (661)
+.+-.+.+-+-+...+ ...+..|+..|..|+...+....-+-.+.+..++.-. .+ .+..-++.|+.++..|+....
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 3333333433333323 3455677888888986533322111122333333221 12 344567788999888887542
Q ss_pred h-------------HHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHH
Q 006099 552 G-------------KAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRG 618 (661)
Q Consensus 552 ~-------------~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 618 (661)
. ...+....++|-|. --.+..|-+|-.|++.+...-..-+.. . -.+++|.++..+.+++.-+
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~--~--l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE--Q--LLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH--H--HHHHHHHHHHHTTSS-HHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH--H--HHHHHHHHHHHhCCCCcch
Confidence 2 12233333445443 111345778889999888876654422 1 2248999999999999888
Q ss_pred HHHHHHHH
Q 006099 619 KRKAAQLL 626 (661)
Q Consensus 619 k~~A~~lL 626 (661)
.-.|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 88887654
No 461
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=26.49 E-value=2.6e+02 Score=29.38 Aligned_cols=228 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHH
Q 006099 368 PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL 446 (661)
Q Consensus 368 ~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 446 (661)
++.+.-.+..|..+.. .. ....++..|+.++..+ ++.....++.++..-...- ..-....++..+..-+
T Consensus 1 ad~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl 70 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGL 70 (339)
T ss_pred CcHHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHh
Q ss_pred ccCCHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcCCHHHHHH-----HHHHHHHhh--------------
Q 006099 447 RIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGKKD-----AATALFNLC-------------- 506 (661)
Q Consensus 447 ~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~-----a~~aL~nL~-------------- 506 (661)
++..+.+|..-...+........+....... .+++.|++.++......... ...+..-++
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 150 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNI 150 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhh
Q ss_pred -----cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHHhhCC--CHHHHH
Q 006099 507 -----IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA-AEAVPVLVEVIGNG--SPRNRE 578 (661)
Q Consensus 507 -----~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~ke 578 (661)
..++....+....+...+ .+.+-....+.+|..+.........--. ...-..++.++-+. ++.+|.
T Consensus 151 ~~~~l~~~~kps~ll~~kvyskl------~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~ 224 (339)
T PF12074_consen 151 SFWSLALDPKPSFLLSEKVYSKL------ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRR 224 (339)
T ss_pred hhhhhccCCCcchhcCHHHHhcc------CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCC
Q 006099 579 NAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGT 615 (661)
Q Consensus 579 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 615 (661)
.|..+|..+...+++. +...++..+...+....
T Consensus 225 ~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 225 AALSALKKLYASNPEL----LSKSLISGLWKWLSSSE 257 (339)
T ss_pred HHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhcc
No 462
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.24 E-value=3.2e+02 Score=27.81 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHhcccCCCCCCHHHHHHHH--HhcCCCCH----HHHHHHHHHHHHHHH
Q 006099 126 VKEQVELVLSQFRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLA--EKLQLMGI----ADLTQESLALHEMVA 199 (661)
Q Consensus 126 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~l~~~~~----~~~~~E~~~l~~~~~ 199 (661)
+.-+++.+|+++-++-++..+.+..+-+.+..++++.+.-......++..- ...|+++- .+.-.|++.++.+++
T Consensus 246 ~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666654211111222333222 22344332 455677788888888
Q ss_pred hcCC--CCchhHHHHHHHHHHHhH
Q 006099 200 STGG--DPGETIEKMSMLLKKIKD 221 (661)
Q Consensus 200 ~~~~--~~~~~~~~~~~ll~~~~~ 221 (661)
+.|. ..+..+.+|-..+.|+++
T Consensus 326 e~G~~msDGaplvkIkqavsKLk~ 349 (384)
T KOG0972|consen 326 EQGAKMSDGAPLVKIKQAVSKLKE 349 (384)
T ss_pred HhcccccCCchHHHHHHHHHHHHH
Confidence 7662 334455666666667754
No 463
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=26.24 E-value=76 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=21.7
Q ss_pred CccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 280 GQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 280 g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
..|||..|.+..+. ..||.|+..|...
T Consensus 28 ECTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 28 ECTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred eCcccHHHHHHHhc---CcCcCCCCccccC
Confidence 46999999998774 5799999887643
No 464
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.75 E-value=2.4e+02 Score=22.83 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHhhhhhhHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc-cCCc
Q 006099 29 VKKQYCNLARRLKLLTPMFEEIKESKEAIPEETSKALVSLKEALASAKELLRFG-SEGS 86 (661)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~leel~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c-~~~s 86 (661)
.+++=..|+.+|..+.|+++.|...+ -+.+........-...-++|+.|+... +.|.
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~ 60 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVRSWGA 60 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHccCH
Confidence 45666789999999999999998755 345555555555555568888888886 3443
No 465
>PRK01343 zinc-binding protein; Provisional
Probab=25.03 E-value=52 Score=24.70 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=18.8
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHH
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~ 293 (661)
...||||+..+..+...=|....-.--+.+|+.
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~ 41 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLS 41 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhC
Confidence 467999998766554333333322334556666
No 466
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.98 E-value=1e+03 Score=27.76 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=85.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccC-Cch-----hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH
Q 006099 440 PSIVHVLRIGSMEARENAAATLFSLSVI-DEN-----KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG 513 (661)
Q Consensus 440 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~-----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 513 (661)
+.|.+-|+-.+.++|.+|+..+.++--- +++ ...+.+ .-+..|.++|.++-+.++..|..-++.... --.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 3455666677889999999999887533 222 222222 456788889998877777666554444322 112
Q ss_pred HHHHcCChHHHHhcccC-----CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 514 KAVRAGVVPTLMHLLTE-----PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
.++=..++..|+.-+.+ ...+++-.....|-.+..+|..-..+- -++|.+-..|++.+.++|-.++.+|..|-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 22322333333333222 234555556666666666664432221 24666666777888999999998888774
Q ss_pred c
Q 006099 589 A 589 (661)
Q Consensus 589 ~ 589 (661)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 3
No 467
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.64 E-value=4.3e+02 Score=31.18 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=73.7
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchH-HHH
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKG-KAV 516 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~iv 516 (661)
....+...+.+++..+......++..+...+....+- ...-++.-..-.+..-.........+|..++..+...- .+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4445566666677777777778888877665322221 11122222222222223445567778888888765543 343
Q ss_pred -HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH
Q 006099 517 -RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 517 -~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~ 553 (661)
+.++..+++.++.+++.++...|..+|....+ .++|
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 57899999999999999999999999999886 4444
No 468
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.30 E-value=50 Score=19.76 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=4.4
Q ss_pred CCCCCCCCC
Q 006099 297 RTCPKTQQT 305 (661)
Q Consensus 297 ~~cP~~~~~ 305 (661)
..||.|+.+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 345555543
No 469
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.79 E-value=55 Score=37.40 Aligned_cols=43 Identities=21% Similarity=0.523 Sum_probs=30.9
Q ss_pred CccCcCCcccccCCee--cCCCccccHHHHHHHHHhCCCCCCC-CCC
Q 006099 261 DFRCPISLELMKDPVI--VSTGQTYERSCIEKWLEAGHRTCPK-TQQ 304 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~--~~cg~t~~r~~I~~w~~~~~~~cP~-~~~ 304 (661)
.|.|.||.--.+--.. ..|||...-+|...||.. +..||. |+.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhc-CCcCCCCCCc
Confidence 4678888655543333 469999999999999994 458995 543
No 470
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.70 E-value=43 Score=20.75 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=3.5
Q ss_pred CcCCccc
Q 006099 264 CPISLEL 270 (661)
Q Consensus 264 CpIc~~~ 270 (661)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 5555543
No 471
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.50 E-value=13 Score=38.26 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred ccCcCCcccccCCeecCC---C--ccccHHHHHHHHHhCCCCCCCCCCC
Q 006099 262 FRCPISLELMKDPVIVST---G--QTYERSCIEKWLEAGHRTCPKTQQT 305 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~~c---g--~t~~r~~I~~w~~~~~~~cP~~~~~ 305 (661)
-.||+|+..-.--++..- | +-+|..|=..|.- ....||.|+..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 579999986544444433 4 4578888888876 45689999764
No 472
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.20 E-value=1.6e+02 Score=32.44 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=44.8
Q ss_pred hhCCCChHHHHHHHHHHHhccCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcc
Q 006099 404 LLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLS 465 (661)
Q Consensus 404 lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls 465 (661)
+....+++++++|..++.+++.+.+||.... ....-..+++.+...-+++-+.++.++..+-
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3445799999999999999999988877554 4455566777777666666555665555543
No 473
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=22.98 E-value=45 Score=27.99 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc---CCCCccchhhhhhHHHHHHHc
Q 006099 254 KAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT---STAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 254 ~~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~---~~~l~~n~~l~~~i~~~~~~~ 328 (661)
.+..+|..|.||.|...-..-.++ .+-...+..+|-.|+..+. ...+.|-..-...++.+++-+
T Consensus 15 ~~~~L~k~FtCp~Cghe~vs~ctv-----------kk~~~~g~~~Cg~CGls~e~ev~~l~~~vDvYs~wvDay~eg~ 81 (104)
T COG4888 15 RPQVLPKTFTCPRCGHEKVSSCTV-----------KKTVNIGTAVCGNCGLSFECEVPELSEPVDVYSAWVDAYLEGR 81 (104)
T ss_pred cCccCCceEecCccCCeeeeEEEE-----------EecCceeEEEcccCcceEEEeccccccchhHHHHHHHHHHhcc
Confidence 344588999999998765432222 1111225567888887664 222333333333444444433
No 474
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=22.88 E-value=8.2e+02 Score=30.54 Aligned_cols=234 Identities=19% Similarity=0.087 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH-HHHHhCCHHHHHHhh---------CC-CChHHHHHHHHHHH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV-AIAEAGAIPLLVGLL---------ST-PDSRTQEHAVTALL 421 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL---------~s-~~~~i~~~A~~~L~ 421 (661)
.+.++.|+..+.+.+|++|.-+.-.++.+.+.+...-. ...+.-++ .++..+ .. --..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~-rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLI-RLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHH-HHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 46788888888999999999888888887653322111 11111111 111111 10 01245666666666
Q ss_pred hccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHH-HHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHH
Q 006099 422 NLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATL-FSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAAT 500 (661)
Q Consensus 422 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 500 (661)
.+..+..... -...++.+..++.....+++.-.+..+ ++++...+.- ...-..+++..++-|.+.+..++.-|+.
T Consensus 155 ~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l-~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 155 AYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL-FQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 6554321100 012334444455443333322111111 1111000000 0111134455566666667777777777
Q ss_pred HHHHhhcccCchHHHHHcCChHHHHhcccCC-Ccc-HHHHHHHHHHHhcCChhhHHH---H-HhCCChHHHHHHhhCCCH
Q 006099 501 ALFNLCIYQGNKGKAVRAGVVPTLMHLLTEP-GGG-MVDEALAILAILSSHPEGKAA---I-GAAEAVPVLVEVIGNGSP 574 (661)
Q Consensus 501 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~-~~~~al~~L~~L~~~~~~~~~---i-~~~g~i~~Lv~lL~~~~~ 574 (661)
+|.-......+...---..++..+..++..- +.. -.......+..++...+.... . ...|.+|.+..++++.=.
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~ 310 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS 310 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence 6665544331111000112333444443321 111 122333445566666533221 1 224888999999987666
Q ss_pred HHHHHHHHHHHHHhcCC
Q 006099 575 RNRENAAAVLVHLCAGD 591 (661)
Q Consensus 575 ~~ke~A~~~L~~L~~~~ 591 (661)
.++..++..+..+....
T Consensus 311 sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 311 SVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77778888887776543
No 475
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=22.76 E-value=49 Score=33.24 Aligned_cols=32 Identities=28% Similarity=0.703 Sum_probs=0.0
Q ss_pred ccCcCCcccccCCeecCCCccccHHHHHHHHHhCC---------CCCCCCCCCCcCC
Q 006099 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGH---------RTCPKTQQTLTST 309 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~---------~~cP~~~~~l~~~ 309 (661)
+.|+||+..|.-| |+-+|+ +.||.|++.|.+.
T Consensus 188 c~C~iCGKaFSRP----------------WLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 188 CECGICGKAFSRP----------------WLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccccccch----------------HHhhcccccccCCCCccCCcccchhcch
No 476
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=1.8e+02 Score=36.09 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCChHHHHHHHcc--CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh----cCC---HHHHHHHHHHHHHhh
Q 006099 436 SGAVPSIVHVLRI--GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----EGT---QRGKKDAATALFNLC 506 (661)
Q Consensus 436 ~g~i~~Lv~lL~~--~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~---~~~~~~a~~aL~nL~ 506 (661)
.|.+-+...+... ...+++.....++.++-........- | .+.+.++++ .+. ..+...+...|.-++
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~---~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIs 914 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLH---G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLIS 914 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhcc---c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhh
Confidence 3444444444433 23567777777777776443322221 2 344444443 332 223333444444443
Q ss_pred cccC-chHHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChh
Q 006099 507 IYQG-NKGKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 507 ~~~~-~~~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~ 551 (661)
.+.= .-..=.-.+++..++.+-+. .|..+.-.|+..+|++++.-.
T Consensus 915 sDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~ 961 (1610)
T KOG1848|consen 915 SDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLK 961 (1610)
T ss_pred hcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence 3210 00111123556666666644 677788889999998886443
No 477
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=22.74 E-value=24 Score=20.47 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=8.3
Q ss_pred ccCcCCcccccCC
Q 006099 262 FRCPISLELMKDP 274 (661)
Q Consensus 262 f~CpIc~~~m~dP 274 (661)
|.||+|...+.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4677777766553
No 478
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.71 E-value=2.3e+02 Score=33.54 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc------CCcH
Q 006099 408 PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS------GAIP 481 (661)
Q Consensus 408 ~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~------g~i~ 481 (661)
.|.-+.-.++..|+.|+.+......+++.|+|..|+.+=.- .++..-...+|+.|+........+... .++.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~--s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~ 442 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV--SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK 442 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc--hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence 45555666778888888887777888888888777665322 233444456777777666544443332 4444
Q ss_pred HHHHhhhcCCHHHHHHH
Q 006099 482 PLVTLLSEGTQRGKKDA 498 (661)
Q Consensus 482 ~Lv~lL~~~~~~~~~~a 498 (661)
.-+.++.-.....++++
T Consensus 443 ~~~~l~~cs~~~~~~~~ 459 (1516)
T KOG1832|consen 443 LAIELLDCSQDQARKNS 459 (1516)
T ss_pred HHHHHHhcchhhccchH
Confidence 45555554444444443
No 479
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.54 E-value=4.9e+02 Score=22.98 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHh-CCHHHHHHhhC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEA-GAIPLLVGLLS 406 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~-~~r~~i~~~-g~i~~Lv~lL~ 406 (661)
...+..|.+.|++.++.++.+++..|..++...+ ..+.++... ..|..+..+-.
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 4678999999999999999999999999986554 334444433 34555544443
No 480
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=22.52 E-value=34 Score=31.23 Aligned_cols=24 Identities=29% Similarity=0.722 Sum_probs=17.4
Q ss_pred CCCccccHHHHHHHHH----------hCCCCCCCCCCCC
Q 006099 278 STGQTYERSCIEKWLE----------AGHRTCPKTQQTL 306 (661)
Q Consensus 278 ~cg~t~~r~~I~~w~~----------~~~~~cP~~~~~l 306 (661)
.+||+| +.||. +|.-+||.|+..-
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 358887 57886 3667999998753
No 481
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=42 Score=36.35 Aligned_cols=66 Identities=20% Similarity=0.404 Sum_probs=44.5
Q ss_pred CCCCCCccCcCC-cccccCCeec--CCCccccHHHHHHHHHhCCCCCCCCCCC-CcCCCCccchhhhhhHHH
Q 006099 256 PVIPDDFRCPIS-LELMKDPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQT-LTSTAVTPNYVLRSLIAQ 323 (661)
Q Consensus 256 ~~~p~~f~CpIc-~~~m~dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~~n~~l~~~i~~ 323 (661)
-..++++.||+| .+.|.+-+.+ .|+.+||..||.+.+... .|+.|... .....+.++..++..+..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n~ 283 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTINR 283 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHHH
Confidence 456888999999 8899888776 578999999999887632 44555432 223344455555554433
No 482
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.25 E-value=4.4e+02 Score=29.86 Aligned_cols=106 Identities=14% Similarity=0.008 Sum_probs=71.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh--h
Q 006099 358 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV--S 435 (661)
Q Consensus 358 ~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~--~ 435 (661)
-+++...+-++.++..+...|+.....-|. .+....++.+.--.|.+.+..++.....+|..|+..+.+...+. -
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 344455556677788888888776654443 33444466777777888889999999999999988776666443 2
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHccc
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSV 466 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~ 466 (661)
...-..|++++..+..-+|..+..++..+..
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 4455667778777643477777777766643
No 483
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=22.23 E-value=1.7e+02 Score=24.50 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=46.5
Q ss_pred CchhhhhhHHHHHHHHHhhhhhhHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc-cCCch
Q 006099 24 DYRGTVKKQYCNLARRLKLLTPMFEEIKESKEAIPEETSKALVSLKEALASAKELLRFG-SEGSK 87 (661)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~leel~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c-~~~sk 87 (661)
..+.+.|++=..|++++.-..|+++.+...++ +...-...+..-...-++|+.|+..- .+|++
T Consensus 6 ~~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 6 DDLSLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 34567888889999999879999999987663 45555555555555569999999885 45544
No 484
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=22.07 E-value=6.5e+02 Score=27.20 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=74.0
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh----------cCCHHHHHHHHHHHHHhhcc
Q 006099 440 PSIVHVLRIGS-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----------EGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 440 ~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----------~~~~~~~~~a~~aL~nL~~~ 508 (661)
..|+.+|.++- ...+.....++.-||.+...-.-+....-+..|+.+.+ ..+..+...++.+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34666666663 34445556666666655433222222222233333322 11346778899999999988
Q ss_pred cCchH-HHHHcCChHHHHhcccC----CC-ccHHHHHHHHHHHhcC-ChhhHHH-HHhCCChHHHHHHhhC
Q 006099 509 QGNKG-KAVRAGVVPTLMHLLTE----PG-GGMVDEALAILAILSS-HPEGKAA-IGAAEAVPVLVEVIGN 571 (661)
Q Consensus 509 ~~~~~-~iv~~g~v~~Lv~lL~~----~~-~~~~~~al~~L~~L~~-~~~~~~~-i~~~g~i~~Lv~lL~~ 571 (661)
..... ...+...+..+.+.+.. .. ..+.-.=+++|.-|.. ..+.|.. +.+.++++.+...+.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 76544 55566666666666533 11 1233334555554433 3366654 4566899999998874
No 485
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.78 E-value=4.7e+02 Score=23.58 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=52.0
Q ss_pred ChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHH-HHHhhhc---CChHHHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGP-LVDLAQN---GTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~-L~~ll~~---~~~~~k~~A~~lL~~L~~~ 632 (661)
++..|..-|.. .++.+...|+.+|-.+..+.+ ..-..+...+++.. |+.++.. ....++.+...++...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45556665653 578889999888888776655 45567777788887 8888863 2457898888888877653
No 486
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=21.53 E-value=1.8e+02 Score=32.43 Aligned_cols=45 Identities=13% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCCCCCCccCcCCccccc----CCee-cCCCccccHHHHHHHHHhCCCCCCCCCCC
Q 006099 254 KAPVIPDDFRCPISLELMK----DPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQT 305 (661)
Q Consensus 254 ~~~~~p~~f~CpIc~~~m~----dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~ 305 (661)
.+......+.|++|..++. ||.. ++.|..|..- -....||.|+.+
T Consensus 418 ~~~~~~~~~~c~~c~~~yd~~~g~~~~~~~~gt~~~~l-------p~~~~cp~c~~~ 467 (479)
T PRK05452 418 TTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGTPWSEV-------PDNFLCPECSLG 467 (479)
T ss_pred cccCCCCeEEECCCCeEECCCCCCcccCCCCCCChhhC-------CCCCcCcCCCCc
Confidence 3445566799999996653 2322 4566544221 145789999864
No 487
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.50 E-value=7.4e+02 Score=26.50 Aligned_cols=127 Identities=19% Similarity=0.120 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcccCCchhhhhhh--cCCcHHHHHhhh---cCCHHHHHHHHHHHHHhhcccCch-------------H
Q 006099 452 EARENAAATLFSLSVIDENKVTIGA--SGAIPPLVTLLS---EGTQRGKKDAATALFNLCIYQGNK-------------G 513 (661)
Q Consensus 452 e~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~---~~~~~~~~~a~~aL~nL~~~~~~~-------------~ 513 (661)
.-|..|+..|..|+..-+ ..+.. .+.+..++.-.. +.+.+.+..|+..+..|+...... .
T Consensus 226 TrR~AA~dfl~~L~~~~~--~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE--KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 345667777778874311 11111 122333322111 234567778888888888765321 2
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
.+...-++|.|. -=.+..+-++..|+..+......- .+..+. +++|.++..|.+++.-+..+|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 333444555554 111245667778888887665532 223333 4799999999999998999888764
No 488
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.28 E-value=84 Score=36.31 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=34.8
Q ss_pred CCccCcCCcc--cccCCeecCCCcc-----ccHHHHHHHHH-hCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLE--LMKDPVIVSTGQT-----YERSCIEKWLE-AGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~--~m~dPv~~~cg~t-----~~r~~I~~w~~-~~~~~cP~~~~~l~ 307 (661)
++-.|.||.. .-.||..-||.++ ..++|+-+|+. .+...|-.|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4467999873 4457766666543 67899999998 45578999987764
No 489
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=21.01 E-value=7.3e+02 Score=23.63 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=58.2
Q ss_pred hHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006099 521 VPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG--AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEA 598 (661)
Q Consensus 521 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~ 598 (661)
++.+++=|...+....-.|...+..|... .+...++ -...+..|-.-|.+.++.+...++.+|..|+..++..-..+
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL 118 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL 118 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33344444443333333444444444433 1222222 22456667777788999999999999999976655333333
Q ss_pred HHcCCHHHHHHhhh---------------cCChHHHHHHHHHHHHHHhhH
Q 006099 599 KELGVMGPLVDLAQ---------------NGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 599 ~~~g~i~~L~~ll~---------------~~~~~~k~~A~~lL~~L~~~~ 633 (661)
+-. .+.|+..++ .......+....+|..|-+..
T Consensus 119 vPy--yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~G 166 (183)
T PF10274_consen 119 VPY--YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNG 166 (183)
T ss_pred HHH--HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhc
Confidence 221 233332222 123555666666666665543
No 490
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.92 E-value=6.1e+02 Score=23.35 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=52.5
Q ss_pred HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH-hCC-ChHHHHH-HhhCCC--HHHHHHHHHHHHHHh
Q 006099 514 KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG-AAE-AVPVLVE-VIGNGS--PRNRENAAAVLVHLC 588 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~-~~g-~i~~Lv~-lL~~~~--~~~ke~A~~~L~~L~ 588 (661)
.+++....+.|++.+.+.+..+...++.++..|... .+..+. +.+ .++.++. ++.+.+ ..-|+.++.++..+|
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 456677888888888777788889999999988743 232222 112 3455555 666443 467888999999999
Q ss_pred cCC
Q 006099 589 AGD 591 (661)
Q Consensus 589 ~~~ 591 (661)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 754
No 491
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.78 E-value=82 Score=23.08 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=25.6
Q ss_pred CCCccCcCCcccccCC-eecCCCccccHHHHHHH
Q 006099 259 PDDFRCPISLELMKDP-VIVSTGQTYERSCIEKW 291 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP-v~~~cg~t~~r~~I~~w 291 (661)
++-|.|..|...+.+. ....-|..||+.|..+-
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 4579999999888766 45567888999987764
No 492
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.77 E-value=1.1e+02 Score=34.67 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=11.0
Q ss_pred CCCChHHHHHHHHHHH
Q 006099 55 EAIPEETSKALVSLKE 70 (661)
Q Consensus 55 ~~~~~~~~~~l~~L~~ 70 (661)
+-+|||+..-|..++.
T Consensus 94 I~LPpSaL~~L~~~~~ 109 (567)
T PLN03086 94 IKLPPSCFTELSDQGA 109 (567)
T ss_pred EEcCHHHHHHHHhcCC
Confidence 3468888777777654
No 493
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.55 E-value=3.1e+02 Score=29.24 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHh
Q 006099 560 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 560 g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~ 631 (661)
.++..|.+-|.+.++.+...|+.+|..+..+.+ ..+.++....+...|..++. +..++++++...++....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 357778888888899999999999988876655 45677777789999999998 6788899988888877765
No 494
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=4.5e+02 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=32.5
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcchhHhhhCCChHH
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPS 441 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~ 441 (661)
..+|.++++|+++...+-..|+.++-.+-. .+.+...|..++-+.+
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 368999999999888888888888877643 3444555655544443
No 495
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.48 E-value=4.1e+02 Score=24.49 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=48.7
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhh---hhhHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHH
Q 006099 281 QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL---RSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIE 357 (661)
Q Consensus 281 ~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l---~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~ 357 (661)
+-||..|=.+-+. .||.|+.++.-....+.... ..-.-.||..-|.+.|=+. ..-....
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~--------------~~L~aa~ 89 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTE--------------NALEAAN 89 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHH--------------HHHHHHH
Confidence 5689999888776 69999988864322211100 0012345554444333221 0123444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhh
Q 006099 358 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADN 388 (661)
Q Consensus 358 ~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~ 388 (661)
.|++.+..-+++.+..--..|..|.++++..
T Consensus 90 el~ee~eeLs~deke~~~~sl~dL~~d~PkT 120 (158)
T PF10083_consen 90 ELIEEDEELSPDEKEQFKESLPDLTKDTPKT 120 (158)
T ss_pred HHHHHhhcCCHHHHHHHHhhhHHHhhcCCcc
Confidence 5555555556666666666676666655443
No 496
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=20.40 E-value=20 Score=28.90 Aligned_cols=37 Identities=24% Similarity=0.565 Sum_probs=28.5
Q ss_pred ccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
-.|.||.+....| |..||..|-.+- ..|.+|++.+.+
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~K-----giCAMCGKki~n 91 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYKK-----GICAMCGKKILN 91 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhhh-----hHHHHhhhHhhc
Confidence 4699999998877 778999997542 368889877643
No 497
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.01 E-value=9e+02 Score=24.28 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=48.1
Q ss_pred hhCCChHHHHHHHccCCHH--------HHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCC--HHHHHHHHHHHH
Q 006099 434 VSSGAVPSIVHVLRIGSME--------ARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT--QRGKKDAATALF 503 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e--------~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~ 503 (661)
.+..++++|+++++..+.- +-+....+|..++ .|-++.|-+++.+++ .-++..|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3567899999999654321 1122222233222 377888999998875 567889999999
Q ss_pred HhhcccCc-hHHHHH
Q 006099 504 NLCIYQGN-KGKAVR 517 (661)
Q Consensus 504 nL~~~~~~-~~~iv~ 517 (661)
.+...+.. |..+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 99887665 555554
Done!