Query 006099
Match_columns 661
No_of_seqs 458 out of 3284
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 4.3E-30 1.5E-34 270.6 22.8 266 369-635 47-338 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 1.3E-29 4.5E-34 278.1 20.8 285 355-641 3-369 (457)
3 3now_A UNC-45 protein, SD10334 100.0 5.9E-29 2E-33 284.2 26.8 300 352-651 419-757 (810)
4 3nmz_A APC variant protein; pr 100.0 4.1E-29 1.4E-33 270.8 21.7 262 371-633 165-452 (458)
5 3nmz_A APC variant protein; pr 100.0 7.6E-29 2.6E-33 268.8 22.9 301 351-651 67-428 (458)
6 3l6x_A Catenin delta-1; cateni 100.0 1.1E-28 3.7E-33 273.3 23.3 294 353-649 47-400 (584)
7 3ul1_B Importin subunit alpha- 100.0 6.3E-28 2.2E-32 268.5 27.4 299 351-649 97-406 (510)
8 3tpo_A Importin subunit alpha- 100.0 1.5E-27 5.2E-32 266.8 29.2 299 351-649 116-425 (529)
9 1xm9_A Plakophilin 1; armadill 100.0 7.9E-28 2.7E-32 263.9 23.0 281 351-633 41-451 (457)
10 3ul1_B Importin subunit alpha- 100.0 5.1E-27 1.7E-31 261.3 26.0 296 354-649 57-363 (510)
11 4b8j_A Importin subunit alpha- 100.0 2.7E-26 9.1E-31 256.7 30.6 298 352-649 115-419 (528)
12 3l6x_A Catenin delta-1; cateni 100.0 8.5E-27 2.9E-31 258.1 26.1 288 352-642 88-486 (584)
13 3now_A UNC-45 protein, SD10334 99.9 6.2E-27 2.1E-31 267.5 23.9 295 353-649 376-713 (810)
14 3nmw_A APC variant protein; AR 99.9 3.6E-27 1.2E-31 248.3 18.0 243 351-593 70-338 (354)
15 4b8j_A Importin subunit alpha- 99.9 1.1E-25 3.7E-30 251.7 30.0 294 354-647 74-374 (528)
16 3tpo_A Importin subunit alpha- 99.9 6.3E-26 2.1E-30 253.7 28.0 296 354-649 76-382 (529)
17 1wa5_B Importin alpha subunit; 99.9 5.2E-25 1.8E-29 246.4 29.8 298 352-649 128-433 (530)
18 1wa5_B Importin alpha subunit; 99.9 9.7E-25 3.3E-29 244.2 30.7 294 354-647 87-386 (530)
19 2jdq_A Importin alpha-1 subuni 99.9 2E-24 6.9E-29 235.8 31.7 295 354-648 64-365 (450)
20 4hxt_A De novo protein OR329; 99.9 5E-25 1.7E-29 220.9 23.6 238 396-633 2-243 (252)
21 4hxt_A De novo protein OR329; 99.9 4.1E-25 1.4E-29 221.5 22.8 239 354-592 2-244 (252)
22 4db8_A Armadillo-repeat protei 99.9 2.1E-25 7E-30 224.4 19.0 236 354-589 12-251 (252)
23 2jdq_A Importin alpha-1 subuni 99.9 2.3E-23 7.9E-28 227.4 33.5 282 353-635 106-394 (450)
24 4db8_A Armadillo-repeat protei 99.9 1.5E-24 5E-29 218.1 19.4 236 396-631 12-251 (252)
25 1jdh_A Beta-catenin; beta-cate 99.9 8.1E-24 2.8E-28 236.1 19.7 293 352-648 15-312 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 3.9E-23 1.3E-27 230.5 24.5 293 353-648 58-359 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 2.2E-23 7.5E-28 238.8 21.3 291 353-647 13-308 (644)
28 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-22 4.4E-27 232.4 25.7 294 353-649 55-357 (644)
29 2z6g_A B-catenin; FULL-length, 99.9 3.9E-22 1.3E-26 232.6 20.6 290 353-646 149-443 (780)
30 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-22 4.6E-27 199.4 13.5 196 353-549 7-230 (233)
31 2z6g_A B-catenin; FULL-length, 99.9 2.4E-21 8.1E-26 226.0 25.1 291 353-646 233-532 (780)
32 3opb_A SWI5-dependent HO expre 99.9 1E-21 3.4E-26 220.3 19.7 280 352-631 374-728 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 4.5E-22 1.5E-26 195.6 14.4 193 397-590 9-230 (233)
34 4db6_A Armadillo repeat protei 99.9 2.5E-21 8.4E-26 188.9 18.4 196 394-589 10-209 (210)
35 4db6_A Armadillo repeat protei 99.9 7.3E-21 2.5E-25 185.6 20.5 197 435-631 10-209 (210)
36 3opb_A SWI5-dependent HO expre 99.8 1.3E-19 4.4E-24 203.3 23.2 290 353-643 333-695 (778)
37 2f42_A STIP1 homology and U-bo 99.8 3E-20 1E-24 172.8 7.3 76 256-331 101-176 (179)
38 1xqr_A HSPBP1 protein; armadil 99.8 3.9E-18 1.3E-22 174.8 22.9 237 352-589 26-287 (296)
39 1wgm_A Ubiquitin conjugation f 99.8 1.8E-19 6E-24 152.1 8.7 78 253-331 14-92 (98)
40 1xqr_A HSPBP1 protein; armadil 99.8 4.9E-18 1.7E-22 174.0 17.1 187 450-636 53-243 (296)
41 2c2l_A CHIP, carboxy terminus 99.8 2.4E-18 8.3E-23 176.0 14.3 220 70-331 56-278 (281)
42 2kr4_A Ubiquitin conjugation f 99.8 3.3E-19 1.1E-23 146.7 5.8 74 255-329 8-81 (85)
43 2kre_A Ubiquitin conjugation f 99.8 5.2E-19 1.8E-23 149.8 6.6 76 254-330 22-97 (100)
44 1t1h_A Gspef-atpub14, armadill 99.7 5.8E-18 2E-22 137.5 7.1 75 256-330 3-77 (78)
45 2yu4_A E3 SUMO-protein ligase 99.6 3.1E-16 1.1E-20 131.7 6.4 73 258-330 4-85 (94)
46 3grl_A General vesicular trans 99.5 4.2E-13 1.4E-17 147.1 22.4 288 352-643 19-354 (651)
47 3ztg_A E3 ubiquitin-protein li 99.5 2.1E-14 7E-19 120.4 9.0 76 256-331 8-86 (92)
48 3grl_A General vesicular trans 99.5 4E-12 1.4E-16 139.4 25.6 292 352-643 58-406 (651)
49 2bay_A PRE-mRNA splicing facto 99.4 3.6E-14 1.2E-18 108.1 2.0 56 261-317 3-59 (61)
50 3htk_C E3 SUMO-protein ligase 99.4 6.2E-13 2.1E-17 129.1 10.5 71 257-327 177-251 (267)
51 3fl2_A E3 ubiquitin-protein li 99.4 1.8E-13 6.3E-18 121.3 5.5 70 257-326 48-118 (124)
52 1z6u_A NP95-like ring finger p 99.4 2.4E-13 8.3E-18 124.2 4.3 70 257-326 74-144 (150)
53 3m62_A Ubiquitin conjugation f 99.4 2.9E-13 9.9E-18 153.5 5.6 74 256-330 886-960 (968)
54 2ecw_A Tripartite motif-contai 99.3 1.3E-12 4.3E-17 107.6 6.4 67 255-321 13-84 (85)
55 1oyz_A Hypothetical protein YI 99.3 3.8E-11 1.3E-15 122.1 18.1 228 353-631 22-250 (280)
56 2ecv_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 107.0 6.1 67 255-321 13-84 (85)
57 2y43_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 111.1 4.7 71 257-328 18-89 (99)
58 2egp_A Tripartite motif-contai 99.3 3.5E-13 1.2E-17 109.4 1.1 65 257-321 8-78 (79)
59 3lrq_A E3 ubiquitin-protein li 99.3 1.8E-12 6E-17 110.2 4.8 71 257-327 18-89 (100)
60 3ltm_A Alpha-REP4; protein eng 99.3 8.9E-11 3.1E-15 113.9 17.6 190 352-592 17-206 (211)
61 3ltm_A Alpha-REP4; protein eng 99.3 1E-10 3.5E-15 113.5 17.6 190 395-635 18-207 (211)
62 2ecy_A TNF receptor-associated 99.3 5.3E-12 1.8E-16 98.4 6.3 55 256-310 10-64 (66)
63 3ltj_A Alpharep-4; protein eng 99.3 1.5E-10 5E-15 111.5 17.7 186 352-588 12-197 (201)
64 3l11_A E3 ubiquitin-protein li 99.3 1.1E-12 3.7E-17 114.7 2.0 70 257-326 11-87 (115)
65 2yur_A Retinoblastoma-binding 99.3 8.6E-12 2.9E-16 99.6 7.0 53 255-307 9-63 (74)
66 2ckl_A Polycomb group ring fin 99.2 2.7E-12 9.3E-17 110.8 3.9 68 257-325 11-83 (108)
67 3hct_A TNF receptor-associated 99.2 4.6E-12 1.6E-16 111.2 4.6 70 255-324 12-81 (118)
68 3ltj_A Alpharep-4; protein eng 99.2 3.5E-10 1.2E-14 108.8 17.7 185 396-631 14-198 (201)
69 2ysl_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 97.9 6.7 57 254-310 13-71 (73)
70 2csy_A Zinc finger protein 183 99.2 5.2E-12 1.8E-16 102.9 3.6 59 257-317 11-69 (81)
71 2djb_A Polycomb group ring fin 99.2 1.9E-11 6.4E-16 97.1 6.8 58 256-314 10-68 (72)
72 2ckl_B Ubiquitin ligase protei 99.2 5.5E-12 1.9E-16 117.7 3.5 70 257-326 50-121 (165)
73 1jm7_B BARD1, BRCA1-associated 99.2 5.6E-12 1.9E-16 110.4 3.0 68 257-327 18-86 (117)
74 2ysj_A Tripartite motif-contai 99.2 4E-11 1.4E-15 92.5 7.3 48 255-302 14-63 (63)
75 1jm7_A BRCA1, breast cancer ty 99.2 1.5E-11 5.2E-16 106.9 5.4 68 259-326 19-88 (112)
76 4ayc_A E3 ubiquitin-protein li 99.2 9E-12 3.1E-16 112.5 3.4 63 260-325 52-114 (138)
77 1oyz_A Hypothetical protein YI 99.2 1.1E-09 3.8E-14 111.1 19.2 202 392-631 19-221 (280)
78 4fdd_A Transportin-1; heat rep 99.2 2.4E-10 8E-15 134.9 15.7 280 354-633 128-473 (852)
79 1g25_A CDK-activating kinase a 99.1 4.1E-11 1.4E-15 93.0 4.7 55 260-314 2-61 (65)
80 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.8E-16 106.4 2.5 65 257-321 19-84 (116)
81 2ct2_A Tripartite motif protei 99.1 1.8E-10 6.2E-15 95.2 6.8 54 256-309 10-69 (88)
82 3hcs_A TNF receptor-associated 99.1 5.3E-11 1.8E-15 111.6 3.9 69 255-323 12-80 (170)
83 3ng2_A RNF4, snurf, ring finge 99.1 5.9E-11 2E-15 93.9 3.5 57 258-315 7-70 (71)
84 3knv_A TNF receptor-associated 99.1 2.3E-11 7.7E-16 109.8 0.7 67 256-322 26-101 (141)
85 2ecj_A Tripartite motif-contai 99.0 2.8E-10 9.5E-15 86.0 5.3 47 256-302 10-58 (58)
86 2d8t_A Dactylidin, ring finger 99.0 1.8E-10 6.2E-15 91.1 4.2 51 258-309 12-62 (71)
87 2ea6_A Ring finger protein 4; 99.0 3.7E-10 1.3E-14 88.6 4.5 52 256-308 10-68 (69)
88 1ibr_B P95, importin beta-1 su 98.9 3.9E-09 1.3E-13 114.6 13.4 274 354-633 128-439 (462)
89 2xeu_A Ring finger protein 4; 98.9 2E-10 6.9E-15 88.7 2.0 54 260-314 2-62 (64)
90 4fdd_A Transportin-1; heat rep 98.9 2.2E-09 7.4E-14 126.6 11.3 273 354-631 215-512 (852)
91 1e4u_A Transcriptional repress 98.9 9.6E-10 3.3E-14 88.0 5.5 55 257-311 7-65 (78)
92 1b3u_A Protein (protein phosph 98.9 1.5E-08 5E-13 113.7 17.1 227 354-589 164-392 (588)
93 2ect_A Ring finger protein 126 98.9 1.3E-09 4.4E-14 87.8 5.8 57 257-314 11-70 (78)
94 1b3u_A Protein (protein phosph 98.9 1.7E-08 5.6E-13 113.2 16.9 268 354-632 281-549 (588)
95 2vgl_B AP-2 complex subunit be 98.8 1.4E-07 4.9E-12 106.2 20.9 265 353-630 120-418 (591)
96 1chc_A Equine herpes virus-1 r 98.8 3.5E-09 1.2E-13 82.8 4.1 48 260-308 4-52 (68)
97 2vgl_B AP-2 complex subunit be 98.8 2.3E-08 7.9E-13 112.7 12.2 260 354-632 49-312 (591)
98 2ecm_A Ring finger and CHY zin 98.8 4.7E-09 1.6E-13 78.2 4.4 47 260-307 4-54 (55)
99 1iym_A EL5; ring-H2 finger, ub 98.7 5.3E-09 1.8E-13 78.0 4.1 48 259-307 3-54 (55)
100 2ep4_A Ring finger protein 24; 98.7 1E-08 3.4E-13 81.6 5.9 51 257-308 11-64 (74)
101 2ecn_A Ring finger protein 141 98.7 2.5E-09 8.6E-14 84.1 2.3 52 257-310 11-62 (70)
102 4gmo_A Putative uncharacterize 98.7 1.7E-08 5.9E-13 115.6 9.9 191 397-588 35-257 (684)
103 1bor_A Transcription factor PM 98.7 3.9E-09 1.3E-13 79.0 2.7 46 259-308 4-49 (56)
104 2kiz_A E3 ubiquitin-protein li 98.7 1.4E-08 4.9E-13 79.5 6.0 49 259-308 12-63 (69)
105 2l0b_A E3 ubiquitin-protein li 98.7 8.8E-09 3E-13 85.5 4.6 50 258-308 37-89 (91)
106 4ap4_A E3 ubiquitin ligase RNF 98.7 3.9E-09 1.3E-13 94.4 2.6 55 259-314 5-66 (133)
107 4gmo_A Putative uncharacterize 98.7 4.6E-08 1.6E-12 112.0 11.7 193 437-630 34-257 (684)
108 1x4j_A Ring finger protein 38; 98.7 1.5E-08 5.1E-13 80.9 5.2 50 258-308 20-72 (75)
109 1v87_A Deltex protein 2; ring- 98.6 2.7E-08 9.1E-13 86.4 5.2 49 260-308 24-94 (114)
110 1qgr_A Protein (importin beta 98.6 8.9E-07 3E-11 104.2 19.3 273 354-632 128-438 (876)
111 3b2a_A TON_1937, putative unch 98.6 2.5E-06 8.6E-11 81.0 17.3 215 353-583 32-255 (265)
112 1qgr_A Protein (importin beta 98.6 5.8E-07 2E-11 105.8 15.9 276 353-633 171-481 (876)
113 1w63_A Adapter-related protein 98.5 2.7E-06 9.4E-11 96.2 20.7 256 355-631 71-379 (618)
114 2bpt_A Importin beta-1 subunit 98.5 2.1E-07 7E-12 109.4 11.5 274 354-632 369-669 (861)
115 4ic3_A E3 ubiquitin-protein li 98.5 1.6E-08 5.5E-13 80.3 1.3 46 258-308 21-67 (74)
116 2y1n_A E3 ubiquitin-protein li 98.5 4.6E-08 1.6E-12 101.5 4.7 50 260-309 331-380 (389)
117 1w63_A Adapter-related protein 98.5 2.5E-06 8.6E-11 96.5 19.1 252 354-632 142-415 (618)
118 2bpt_A Importin beta-1 subunit 98.5 2E-06 7E-11 100.9 17.5 275 353-632 133-441 (861)
119 2ecg_A Baculoviral IAP repeat- 98.4 2E-08 6.8E-13 80.1 -0.4 46 258-308 22-68 (75)
120 1ibr_B P95, importin beta-1 su 98.4 9.8E-07 3.3E-11 95.5 12.7 233 354-591 172-439 (462)
121 4ap4_A E3 ubiquitin ligase RNF 98.4 4.5E-08 1.6E-12 87.4 1.7 56 259-315 70-132 (133)
122 2ecl_A Ring-box protein 2; RNF 98.4 2.2E-07 7.4E-12 75.1 3.7 48 260-308 14-76 (81)
123 1u6g_C TIP120 protein, CAND1; 98.3 4E-07 1.4E-11 111.6 7.5 272 354-632 6-285 (1230)
124 2vje_A E3 ubiquitin-protein li 98.3 4.1E-07 1.4E-11 69.8 3.7 48 259-307 6-56 (64)
125 1wim_A KIAA0161 protein; ring 98.3 2.4E-07 8.2E-12 77.3 2.1 66 260-326 4-83 (94)
126 2qk2_A LP04448P; mini spindles 98.3 4.9E-06 1.7E-10 82.2 11.9 186 440-633 18-207 (242)
127 2qk2_A LP04448P; mini spindles 98.2 3.5E-06 1.2E-10 83.2 10.6 183 358-549 19-206 (242)
128 3dpl_R Ring-box protein 1; ubi 98.2 8.5E-07 2.9E-11 75.3 4.6 46 261-307 37-100 (106)
129 2vje_B MDM4 protein; proto-onc 98.2 6E-07 2E-11 68.6 3.3 47 260-307 6-55 (63)
130 2vgl_A Adaptor protein complex 98.2 5.2E-05 1.8E-09 85.6 19.8 255 354-631 111-398 (621)
131 2vgl_A Adaptor protein complex 98.1 0.0001 3.4E-09 83.2 19.8 256 354-632 146-434 (621)
132 2yho_A E3 ubiquitin-protein li 98.1 6.5E-07 2.2E-11 71.8 0.6 45 259-308 16-61 (79)
133 1u6g_C TIP120 protein, CAND1; 98.0 3.3E-05 1.1E-09 94.5 15.7 273 353-632 132-464 (1230)
134 3t6p_A Baculoviral IAP repeat- 98.0 9.2E-07 3.2E-11 91.3 1.1 46 258-308 292-338 (345)
135 3b2a_A TON_1937, putative unch 98.0 2.5E-05 8.6E-10 74.2 10.3 221 397-629 34-259 (265)
136 2qk1_A Protein STU2; STU2P, XM 98.0 1.2E-05 4.2E-10 79.8 8.7 189 359-548 21-220 (249)
137 2d8s_A Cellular modulator of i 98.0 8.6E-06 3E-10 65.2 5.7 51 258-308 12-70 (80)
138 1te4_A Conserved protein MTH18 98.0 7.4E-07 2.5E-11 79.2 -0.8 120 354-505 12-131 (131)
139 2ea5_A Cell growth regulator w 98.0 8.3E-06 2.8E-10 63.2 5.3 45 259-308 13-58 (68)
140 1te4_A Conserved protein MTH18 98.0 1.2E-06 4E-11 77.9 0.4 120 395-545 11-130 (131)
141 1ho8_A Vacuolar ATP synthase s 97.9 7.1E-05 2.4E-09 79.4 12.4 263 365-630 136-475 (480)
142 2qk1_A Protein STU2; STU2P, XM 97.8 5.8E-05 2E-09 74.8 10.4 192 441-633 20-222 (249)
143 4a0k_B E3 ubiquitin-protein li 97.8 2.9E-06 1E-10 73.0 0.2 45 262-307 49-111 (117)
144 4ady_A RPN2, 26S proteasome re 97.8 0.00069 2.3E-08 78.1 19.3 236 354-631 429-676 (963)
145 3dad_A FH1/FH2 domain-containi 97.8 0.00037 1.3E-08 70.5 14.9 177 354-530 118-316 (339)
146 3dad_A FH1/FH2 domain-containi 97.7 0.00061 2.1E-08 68.9 14.6 179 442-620 123-325 (339)
147 2db0_A 253AA long hypothetical 97.6 0.0059 2E-07 55.8 17.9 213 396-631 32-246 (253)
148 3tjz_B Coatomer subunit gamma; 97.6 0.00059 2E-08 70.7 13.2 265 312-624 79-346 (355)
149 3tjz_B Coatomer subunit gamma; 97.5 0.00091 3.1E-08 69.3 13.8 249 355-635 69-320 (355)
150 1ho8_A Vacuolar ATP synthase s 97.4 0.0034 1.2E-07 66.6 16.4 230 358-589 171-476 (480)
151 2iw3_A Elongation factor 3A; a 97.3 0.011 3.9E-07 68.8 20.7 260 354-633 54-326 (986)
152 2db0_A 253AA long hypothetical 97.2 0.045 1.5E-06 50.1 19.2 216 352-589 30-246 (253)
153 4ady_A RPN2, 26S proteasome re 97.2 0.042 1.4E-06 63.5 23.6 241 353-630 471-718 (963)
154 2ct0_A Non-SMC element 1 homol 97.0 0.00079 2.7E-08 52.6 4.8 46 262-307 16-63 (74)
155 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00088 3E-08 50.1 4.7 48 260-307 5-58 (60)
156 4ffb_C Protein STU2; tubulin f 96.8 0.013 4.4E-07 58.7 13.7 186 359-549 14-213 (278)
157 2iw3_A Elongation factor 3A; a 96.6 0.0097 3.3E-07 69.4 12.7 262 354-633 14-282 (986)
158 3vk6_A E3 ubiquitin-protein li 96.6 0.00098 3.3E-08 54.2 2.9 46 263-308 3-49 (101)
159 3oc3_A Helicase MOT1, MOT1; re 96.6 0.015 5.1E-07 62.3 12.2 242 355-627 175-432 (800)
160 2fv2_A RCD1 required for cell 96.3 0.12 4.2E-06 49.9 16.0 227 355-587 4-266 (268)
161 3k1l_B Fancl; UBC, ring, RWD, 96.2 0.00092 3.2E-08 67.2 0.5 47 261-307 308-372 (381)
162 2of3_A ZYG-9; multifunctional 95.9 0.19 6.6E-06 49.4 15.6 179 357-547 49-235 (266)
163 1wa5_C Importin alpha RE-expor 95.7 0.15 5.3E-06 60.3 16.7 253 369-631 376-670 (960)
164 4ffb_C Protein STU2; tubulin f 95.5 0.37 1.3E-05 47.8 16.3 188 398-592 12-215 (278)
165 1upk_A MO25 protein; transfera 95.3 0.16 5.4E-06 51.3 12.7 196 354-551 78-286 (341)
166 2fv2_A RCD1 required for cell 94.9 0.43 1.5E-05 46.1 13.7 98 536-633 73-176 (268)
167 1wa5_C Importin alpha RE-expor 94.4 0.72 2.5E-05 54.5 17.4 218 365-588 416-669 (960)
168 3ebb_A Phospholipase A2-activa 93.7 1.1 3.9E-05 45.0 14.7 135 491-627 161-302 (304)
169 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.028 9.5E-07 46.8 2.1 34 260-293 2-38 (101)
170 3u0r_A Apoptosis inhibitor 5; 93.5 1.5 5.1E-05 46.4 15.4 130 356-504 31-160 (507)
171 3i2d_A E3 SUMO-protein ligase 93.1 0.069 2.4E-06 54.6 4.5 62 261-322 249-314 (371)
172 1lrv_A LRV, leucine-rich repea 93.0 0.16 5.3E-06 49.6 6.8 172 385-626 63-241 (244)
173 3ebb_A Phospholipase A2-activa 92.9 0.75 2.6E-05 46.3 11.9 187 355-543 104-300 (304)
174 2f31_A Diaphanous protein homo 92.8 1.6 5.5E-05 42.1 13.7 152 358-510 4-183 (233)
175 3nw0_A Non-structural maintena 92.7 0.081 2.8E-06 51.4 4.3 48 262-309 181-230 (238)
176 3oc3_A Helicase MOT1, MOT1; re 92.3 0.82 2.8E-05 49.2 11.4 185 369-584 243-431 (800)
177 2of3_A ZYG-9; multifunctional 92.3 0.86 2.9E-05 44.8 11.0 187 441-640 50-246 (266)
178 1lrv_A LRV, leucine-rich repea 92.2 0.1 3.5E-06 51.0 4.2 134 399-584 101-241 (244)
179 3eg5_B Protein diaphanous homo 92.0 4.1 0.00014 42.4 16.5 172 357-530 69-275 (383)
180 4fo9_A E3 SUMO-protein ligase 91.9 0.12 4.2E-06 52.6 4.6 63 260-322 214-280 (360)
181 2x1g_F Cadmus; transport prote 91.9 4.2 0.00014 47.9 18.6 173 449-631 476-663 (971)
182 2bnx_A Diaphanous protein homo 90.4 5.4 0.00018 41.5 15.5 177 357-535 7-219 (386)
183 2x1g_F Cadmus; transport prote 90.4 6.9 0.00024 46.0 18.5 213 408-632 476-723 (971)
184 2f31_A Diaphanous protein homo 90.0 1.7 5.8E-05 41.9 10.6 141 436-577 42-216 (233)
185 2x19_B Importin-13; nuclear tr 89.5 6 0.0002 46.4 17.0 135 364-509 459-601 (963)
186 1upk_A MO25 protein; transfera 89.3 12 0.00043 37.6 16.3 157 473-630 73-237 (341)
187 3eg5_B Protein diaphanous homo 88.9 14 0.00047 38.3 17.2 143 477-619 108-282 (383)
188 1lsh_A Lipovitellin (LV-1N, LV 87.1 14 0.00048 43.8 18.0 239 355-635 312-580 (1056)
189 2x19_B Importin-13; nuclear tr 86.5 8.2 0.00028 45.2 15.5 174 447-630 459-645 (963)
190 2bnx_A Diaphanous protein homo 84.7 22 0.00074 36.9 15.9 130 492-621 72-222 (386)
191 3u0r_A Apoptosis inhibitor 5; 83.8 5.3 0.00018 42.3 10.5 120 489-626 39-158 (507)
192 1weo_A Cellulose synthase, cat 83.2 1.6 5.4E-05 34.5 4.7 47 261-307 16-69 (93)
193 3ibv_A Exportin-T; karyopherin 82.9 19 0.00064 42.4 16.2 216 355-591 7-262 (980)
194 4hat_C Exportin-1; heat repeat 82.6 4.1 0.00014 48.3 10.3 141 366-510 465-621 (1023)
195 3c2g_A SYS-1 protein; beta-cat 81.9 17 0.00059 36.6 12.7 128 502-630 266-402 (619)
196 3qml_C Protein SLS1, nucleotid 80.5 6.8 0.00023 38.9 9.3 146 438-588 23-188 (315)
197 3m1i_C Exportin-1; heat repeat 80.0 19 0.00066 42.6 15.2 221 353-590 15-264 (1049)
198 3gjx_A Exportin-1; transport, 78.4 62 0.0021 38.3 18.4 220 352-590 26-276 (1073)
199 3c2g_A SYS-1 protein; beta-cat 77.7 34 0.0011 34.6 13.2 177 372-550 261-475 (619)
200 3m1i_C Exportin-1; heat repeat 77.5 61 0.0021 38.2 18.5 139 449-590 465-619 (1049)
201 1mhq_A ADP-ribosylation factor 76.3 8 0.00027 34.2 7.8 74 352-425 36-116 (148)
202 3l9t_A Putative uncharacterize 76.2 18 0.00062 34.5 10.6 142 441-601 75-219 (240)
203 4hat_C Exportin-1; heat repeat 76.2 5.6 0.00019 47.1 8.8 140 449-591 465-620 (1023)
204 1x5b_A Signal transducing adap 74.1 7.9 0.00027 34.9 7.3 73 352-424 50-124 (163)
205 1lsh_A Lipovitellin (LV-1N, LV 72.6 72 0.0025 37.7 17.1 165 397-591 392-578 (1056)
206 1juq_A ADP-ribosylation factor 70.5 9.4 0.00032 34.6 6.9 74 352-425 48-128 (171)
207 3ldz_A STAM-1, signal transduc 69.6 9.7 0.00033 33.3 6.6 74 352-425 40-114 (140)
208 3ibv_A Exportin-T; karyopherin 66.0 73 0.0025 37.3 15.1 284 314-630 21-360 (980)
209 3l9t_A Putative uncharacterize 65.6 37 0.0013 32.4 10.1 139 355-513 71-213 (240)
210 3a6p_A Exportin-5; exportin-5, 64.3 55 0.0019 39.4 14.0 214 356-591 13-278 (1204)
211 3mjh_B Early endosome antigen 64.0 1.5 5E-05 28.2 0.0 17 260-276 4-20 (34)
212 3g2s_A C-terminal fragment of 63.3 20 0.00067 31.6 7.4 74 352-425 46-126 (149)
213 2k5c_A Uncharacterized protein 63.1 2.3 8E-05 32.6 1.0 54 262-315 9-70 (95)
214 3qml_C Protein SLS1, nucleotid 59.8 69 0.0024 31.7 11.1 147 479-631 23-189 (315)
215 3gs3_A Symplekin, LD45768P; he 56.5 1.4E+02 0.0049 28.6 12.9 145 353-506 14-172 (257)
216 2ko5_A Ring finger protein Z; 55.6 5.8 0.0002 31.7 2.1 48 261-310 28-75 (99)
217 2jvx_A NF-kappa-B essential mo 54.8 3.2 0.00011 25.3 0.4 15 260-274 2-16 (28)
218 1x5b_A Signal transducing adap 51.9 29 0.00098 31.1 6.5 71 561-631 53-125 (163)
219 3ldz_A STAM-1, signal transduc 51.8 20 0.00067 31.3 5.3 71 561-631 43-114 (140)
220 3zyq_A Hepatocyte growth facto 51.2 26 0.00089 33.2 6.5 73 353-425 44-118 (226)
221 2cs3_A Protein C14ORF4, MY039 49.9 29 0.001 26.7 5.1 36 259-294 13-52 (93)
222 1mhq_A ADP-ribosylation factor 49.7 32 0.0011 30.2 6.4 72 561-632 39-117 (148)
223 1m3v_A FLIN4, fusion of the LI 48.6 10 0.00036 32.0 2.9 51 259-310 30-83 (122)
224 1dvp_A HRS, hepatocyte growth 47.4 32 0.0011 32.4 6.4 72 353-424 41-114 (220)
225 3gjx_A Exportin-1; transport, 46.4 2.3E+02 0.0077 33.5 14.7 215 397-632 29-276 (1073)
226 3gs3_A Symplekin, LD45768P; he 46.1 2.1E+02 0.0071 27.5 14.2 106 436-546 52-171 (257)
227 1elk_A Target of MYB1; superhe 45.5 54 0.0019 29.0 7.3 74 352-425 51-130 (157)
228 1juq_A ADP-ribosylation factor 45.2 39 0.0013 30.5 6.3 72 561-632 51-129 (171)
229 3o2t_A Symplekin; heat repeat, 44.7 1.7E+02 0.0057 30.1 11.7 144 354-506 25-182 (386)
230 1vdy_A Hypothetical protein (R 44.1 49 0.0017 28.7 6.5 71 561-631 50-130 (140)
231 6rxn_A Rubredoxin; electron tr 43.9 7.3 0.00025 26.9 0.9 14 256-269 25-38 (46)
232 2kkx_A Uncharacterized protein 43.8 18 0.00061 29.2 3.2 52 258-310 24-81 (102)
233 3g2s_A C-terminal fragment of 41.4 40 0.0014 29.6 5.6 72 561-632 49-127 (149)
234 1e8j_A Rubredoxin; iron-sulfur 41.2 12 0.0004 26.6 1.6 15 255-269 30-44 (52)
235 2xqn_T Testin, TESS; metal-bin 41.0 18 0.00061 30.6 3.2 47 259-308 28-75 (126)
236 3zyq_A Hepatocyte growth facto 40.4 36 0.0012 32.2 5.6 69 397-465 46-117 (226)
237 3a6p_A Exportin-5; exportin-5, 40.0 5.5E+02 0.019 30.6 17.5 250 365-627 58-376 (1204)
238 3gae_A Protein DOA1; UFD3, CDC 38.7 17 0.00057 35.3 2.9 101 489-592 101-220 (253)
239 3gae_A Protein DOA1; UFD3, CDC 37.9 36 0.0012 32.9 5.2 129 371-509 71-219 (253)
240 4rxn_A Rubredoxin; electron tr 37.6 10 0.00035 27.1 0.9 14 256-269 31-44 (54)
241 2kn9_A Rubredoxin; metalloprot 36.4 14 0.00048 28.8 1.6 14 256-269 55-68 (81)
242 2xjy_A Rhombotin-2; oncoprotei 36.3 21 0.00071 30.4 2.9 49 259-308 27-78 (131)
243 1yk4_A Rubredoxin, RD; electro 33.7 13 0.00045 26.3 0.9 14 256-269 30-43 (52)
244 3pwf_A Rubrerythrin; non heme 33.3 93 0.0032 27.9 6.9 28 259-306 136-163 (170)
245 2v3b_B Rubredoxin 2, rubredoxi 33.2 13 0.00045 26.7 0.9 14 256-269 31-44 (55)
246 3pst_A Protein DOA1; protein d 31.3 3.3E+02 0.011 28.2 11.4 106 489-597 273-397 (425)
247 1x61_A Thyroid receptor intera 30.4 66 0.0023 23.7 4.6 35 259-293 31-66 (72)
248 3vhs_A ATPase wrnip1; zinc fin 30.4 13 0.00045 21.7 0.4 11 262-272 7-17 (29)
249 1dvp_A HRS, hepatocyte growth 30.4 77 0.0026 29.7 6.1 71 561-631 43-115 (220)
250 2rgt_A Fusion of LIM/homeobox 30.3 51 0.0018 29.4 4.6 48 259-309 31-78 (169)
251 1dx8_A Rubredoxin; electron tr 30.2 16 0.00054 27.7 0.9 14 256-269 35-48 (70)
252 2o35_A Hypothetical protein DU 29.6 21 0.00073 28.6 1.6 13 282-294 42-54 (105)
253 1rut_X Flinc4, fusion protein 29.5 14 0.00047 34.0 0.6 49 259-308 30-81 (188)
254 2jtn_A LIM domain-binding prot 29.4 36 0.0012 30.9 3.5 48 259-309 85-132 (182)
255 3fyb_A Protein of unknown func 29.4 22 0.00075 28.6 1.6 13 282-294 41-53 (104)
256 3l3f_X Protein DOA1, DOA1/UFD3 29.0 2.8E+02 0.0096 28.1 10.3 105 489-595 210-332 (362)
257 1s24_A Rubredoxin 2; electron 27.0 20 0.00068 28.4 1.0 14 256-269 63-76 (87)
258 2jne_A Hypothetical protein YF 27.0 2.6 9E-05 33.8 -4.0 40 262-307 33-72 (101)
259 2d8x_A Protein pinch; LIM doma 25.9 48 0.0016 24.4 3.0 35 259-293 29-64 (70)
260 3pst_A Protein DOA1; protein d 25.5 1.7E+02 0.0059 30.3 8.0 129 371-509 243-391 (425)
261 1iml_A CRIP, cysteine rich int 25.1 52 0.0018 24.7 3.1 45 259-306 25-71 (76)
262 3vld_A DNA mismatch repair pro 24.9 4.4E+02 0.015 27.8 10.9 129 439-576 75-212 (500)
263 3l3f_X Protein DOA1, DOA1/UFD3 24.7 82 0.0028 32.1 5.4 128 371-508 180-327 (362)
264 3uk3_C Zinc finger protein 217 24.3 28 0.00097 23.9 1.4 40 261-307 4-43 (57)
265 2lv2_A Insulinoma-associated p 24.3 1E+02 0.0034 23.9 4.8 38 259-307 26-67 (85)
266 2l4z_A DNA endonuclease RBBP8, 23.6 47 0.0016 28.0 2.9 38 261-307 61-99 (123)
267 2d8z_A Four and A half LIM dom 23.0 60 0.0021 23.8 3.1 34 259-292 29-63 (70)
268 2dar_A PDZ and LIM domain prot 22.3 63 0.0021 25.2 3.2 37 263-308 27-63 (90)
269 2ct7_A Ring finger protein 31; 22.3 35 0.0012 26.8 1.7 31 261-291 24-61 (86)
270 1elk_A Target of MYB1; superhe 20.8 1.7E+02 0.0057 25.7 6.1 72 561-632 54-131 (157)
271 2cup_A Skeletal muscle LIM-pro 20.7 65 0.0022 25.7 3.1 47 259-308 31-78 (101)
272 2cur_A Skeletal muscle LIM-pro 20.6 87 0.003 22.8 3.6 35 259-293 29-64 (69)
273 3lay_A Zinc resistance-associa 20.6 1.9E+02 0.0063 26.1 6.3 56 120-178 66-121 (175)
274 3vld_A DNA mismatch repair pro 20.5 2.7E+02 0.0091 29.5 8.3 103 354-462 116-221 (500)
275 1nyp_A Pinch protein; LIM doma 20.4 51 0.0018 23.9 2.2 33 259-291 29-62 (66)
276 1wig_A KIAA1808 protein; LIM d 20.1 50 0.0017 24.7 2.1 35 259-293 29-65 (73)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.3e-30 Score=270.63 Aligned_cols=266 Identities=21% Similarity=0.220 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-----------CChHHHHHHHHHHHhccCCCc-chhHhhh-
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNLSICED-NKGSIVS- 435 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~i~~~A~~~L~nLs~~~~-~k~~i~~- 435 (661)
..+.+|++.|.+++. ++++|..+++.|++++|+.+|.+ .++.+|++|+++|.||+.+++ +|..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456689999999997 58999999999999999999952 246799999999999998754 7887764
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccC--CchhhhhhhcCCcHHHHHhh-hcCCHHHHHHHHHHHHHhhc-ccCc
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCI-YQGN 511 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~ 511 (661)
.|+|+.|+.+|+++++++++.|+++|.+|+.. ++++..+.+.|+|++|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999985 46899999999999999975 56788999999999999999 6678
Q ss_pred hHHHH-HcCChHHHHhcccCCCc----cHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHH
Q 006099 512 KGKAV-RAGVVPTLMHLLTEPGG----GMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAA 582 (661)
Q Consensus 512 ~~~iv-~~g~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~ 582 (661)
+..++ ..|+++.|+.+|.+++. .+++.|+++|.||+. .++++..+.+.|+++.|+.+|++++..+++.|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 78999999999987544 489999999999995 8899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHH
Q 006099 583 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 583 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
+|+||+.++++.+..+.+.|+++.|+.++.++++++++.|.++|++|....+.
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999988899999999999999999999999999999999999999976543
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.3e-29 Score=278.07 Aligned_cols=285 Identities=23% Similarity=0.243 Sum_probs=245.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSI 433 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i 433 (661)
.++.|+..|.+++++.|..|+..|++++.+++.++..+++.|+||.|+.+|+++++.+|..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999988888898999999999999999999999999999999999987 8899999
Q ss_pred hhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh--------cC--------CHHHHH
Q 006099 434 VSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS--------EG--------TQRGKK 496 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 496 (661)
++.|+++.|+++|. ++++++++.|+++|++|+.+++++..+++ |++++|+++|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 78999999999999999999889999999 99999999993 22 355667
Q ss_pred HHHHHHHHhhcccCchHHHHHc-CChHHHHhcccC------CCccHHHHHHHHHHHhcCCh-------------------
Q 006099 497 DAATALFNLCIYQGNKGKAVRA-GVVPTLMHLLTE------PGGGMVDEALAILAILSSHP------------------- 550 (661)
Q Consensus 497 ~a~~aL~nL~~~~~~~~~iv~~-g~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~------------------- 550 (661)
.|+++|+||+..++++..+++. |+++.|+.+|.+ .+..+++.|+.+|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998888888887 999999999975 46678899999999997421
Q ss_pred --------------------------------hhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCHHH---
Q 006099 551 --------------------------------EGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQQY--- 594 (661)
Q Consensus 551 --------------------------------~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~~~--- 594 (661)
.+.+.+++.|+++.|+.+|.+ .++.+++.|+|+|.|||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 122344556778999999975 46999999999999999865422
Q ss_pred H-H-HHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHh
Q 006099 595 L-A-EAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQV 641 (661)
Q Consensus 595 ~-~-~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~ 641 (661)
. + .+.+.|++|.|+.++.+++.++++.|+++|++|+... +.+..+.
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~~~~i~ 369 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMG 369 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GGHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 1 2 3346899999999999999999999999999998743 3343333
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=5.9e-29 Score=284.17 Aligned_cols=300 Identities=15% Similarity=0.158 Sum_probs=267.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-----------------------------hhH---HHHHHhCCHH
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-----------------------------DNR---VAIAEAGAIP 399 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~ 399 (661)
+.+.++.|++.|++++...+..|++.|.+++.+.+ .++ ..+++.|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 46899999999999999999999999999997442 122 6788999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh---h
Q 006099 400 LLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG---A 476 (661)
Q Consensus 400 ~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~---~ 476 (661)
.|+.+|+++++.+|++|+++|.|++.++++|..+++.|++++|+.+|.++++..++.|+++|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999998899999999999999999999999999999999999987654333221 2
Q ss_pred cCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhccc-CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHH
Q 006099 477 SGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ-GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 554 (661)
Q Consensus 477 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 554 (661)
.|++++|+++|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.+++..++..|+.+|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999866 3455678999999999985 568889999999999999999999999999999999999999988
Q ss_pred HHHh-CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 555 AIGA-AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 555 ~i~~-~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.++. .|+++.|+.++.+.+..+|+.|+++|.+|+.+++..+..+++ .|+++.|+.++.+++.++++.|.++|.++...
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 8885 689999999999999999999999999999988888888888 89999999999999999999999999999987
Q ss_pred HHHHHHHHhhhhhHHHhhh
Q 006099 633 IEQQKQAQVQTESQSQIQE 651 (661)
Q Consensus 633 ~~~~~~~l~~~~~~~~l~~ 651 (661)
..++...+.+.|.+.-|.+
T Consensus 739 s~e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 739 GEEIAKKLFETDIMELLSG 757 (810)
T ss_dssp CHHHHHHHHTSTHHHHHTT
T ss_pred CHHHHHHHHHCCCHHHHHH
Confidence 7788888888887766554
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=270.83 Aligned_cols=262 Identities=21% Similarity=0.223 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-----------CChHHHHHHHHHHHhccCCCc-chhHhhh-CC
Q 006099 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNLSICED-NKGSIVS-SG 437 (661)
Q Consensus 371 ~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~i~~~A~~~L~nLs~~~~-~k~~i~~-~g 437 (661)
+.+|++.|.+++. ++++|..+.+.|++++|+.+|.. .++.++++|+++|.||+.+++ ++..+.. .|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4589999999975 69999999999999999999952 246789999999999998754 6777764 56
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHcccC--CchhhhhhhcCCcHHHHHhh-hcCCHHHHHHHHHHHHHhhc-ccCchH
Q 006099 438 AVPSIVHVLRIGSMEARENAAATLFSLSVI--DENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCI-YQGNKG 513 (661)
Q Consensus 438 ~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~~~ 513 (661)
+|+.|+.+|.++++++++.|+++|.+|+.. ++++..+.+.|+|++|+++| .+++..+++.|+.+|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 699999999999999999999999999985 46889999999999999975 56788999999999999999 668888
Q ss_pred HHH-HcCChHHHHhcccCCCc----cHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 514 KAV-RAGVVPTLMHLLTEPGG----GMVDEALAILAILSS----HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 514 ~iv-~~g~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
.++ ..|+++.|+.+|.+++. .+++.|+++|.||+. .++++..+.+.|+++.|+.+|++++..++++|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 888 79999999999987554 389999999999994 889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 585 VHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 585 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
+||+.++++.+..+.+.|+++.|+.++.++++++++.|.++|++|....
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999888999999999999999999999999999999999999998654
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=7.6e-29 Score=268.76 Aligned_cols=301 Identities=20% Similarity=0.200 Sum_probs=262.1
Q ss_pred hhhhHHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCH----------HHHHHhhCCC
Q 006099 351 AERTKIEILLCKLTSG------------SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAI----------PLLVGLLSTP 408 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~s~ 408 (661)
...|.++.|++.|+.. +++.|.+|+++|.+++.++++......+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4568999999999963 37999999999999999999888888888888 7778888764
Q ss_pred C--hH-----HHH-------HHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc-----------CCHHHHHHHHHHHHH
Q 006099 409 D--SR-----TQE-------HAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-----------GSMEARENAAATLFS 463 (661)
Q Consensus 409 ~--~~-----i~~-------~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~a~~~L~~ 463 (661)
. .+ +++ +|+++|.|++.++++|..|++.|++++|+.+|.. .+++++.+|+++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 2 22 444 8999999999999999999999999999999952 246789999999999
Q ss_pred cccCCc-hhhhhhh-cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc--cCchHHHHHcCChHHHHhcc-cCCCccHHHH
Q 006099 464 LSVIDE-NKVTIGA-SGAIPPLVTLLSEGTQRGKKDAATALFNLCIY--QGNKGKAVRAGVVPTLMHLL-TEPGGGMVDE 538 (661)
Q Consensus 464 Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~iv~~g~v~~Lv~lL-~~~~~~~~~~ 538 (661)
|+..++ ++..+.. .|+||.|+.+|.+++++++..|+++|.||+.. ++++..+++.|+++.|+++| .+.+..+++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998876 6666654 47799999999999999999999999999985 45788889999999999985 5577889999
Q ss_pred HHHHHHHhcC-ChhhHHHHH-hCCChHHHHHHhhCCCH----HHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHH
Q 006099 539 ALAILAILSS-HPEGKAAIG-AAEAVPVLVEVIGNGSP----RNRENAAAVLVHLCA---GDQQYLAEAKELGVMGPLVD 609 (661)
Q Consensus 539 al~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~----~~ke~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ 609 (661)
|+.+|+||+. .++++..++ ..|+++.|+.+|.++++ .+++.|+++|.||+. .++.+...+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999999 778888887 68999999999987654 489999999999997 78889999999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhh
Q 006099 610 LAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQIQE 651 (661)
Q Consensus 610 ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l~~ 651 (661)
++.+++..+++.|+++|++|+...++++..+.+.|...-|-+
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~ 428 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999777888899999888766654
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.1e-28 Score=273.28 Aligned_cols=294 Identities=23% Similarity=0.305 Sum_probs=247.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC--Ccch
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC--EDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~--~~~k 430 (661)
.+.++.||+.|.+++++.|..|+..|.+++..+..++..+++.|+||+|+.+|++++..+|++|+++|.||+.. ++||
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 36799999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred hHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh------------------cCC
Q 006099 431 GSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS------------------EGT 491 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~ 491 (661)
..|++.|+|+.|+.+|.+ ++.+++++++++|++||.+++++..|++ +++++|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 4789999999999999999999999995 57999999872 124
Q ss_pred HHHHHHHHHHHHHhhcccCc-hHHHHH-cCChHHHHhcccC------CCccHHHHHHHHHHHhcCChh------------
Q 006099 492 QRGKKDAATALFNLCIYQGN-KGKAVR-AGVVPTLMHLLTE------PGGGMVDEALAILAILSSHPE------------ 551 (661)
Q Consensus 492 ~~~~~~a~~aL~nL~~~~~~-~~~iv~-~g~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~~------------ 551 (661)
..++++|+++|.||+...++ +..+++ .|+++.|+.+|.+ .+...++.|+.+|.||+..-+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 68999999999999998755 888887 4667899999964 466789999999999997621
Q ss_pred --------------hHHHHHhCCChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCH----HHHHHHHHcCCHHHHHHhhh
Q 006099 552 --------------GKAAIGAAEAVPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQ----QYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 552 --------------~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~----~~~~~~~~~g~i~~L~~ll~ 612 (661)
+...+...++++.|+.+|+ +.++.+++.|+++|.|||.+.. .....+.+.|+++.|+.++.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1122233355778899996 4679999999999999998752 22334456789999999999
Q ss_pred cCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 006099 613 NGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 613 ~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l 649 (661)
+++.++++.|.++|++|+.... .+..+ ..+.+..|
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~-~~~~I-~~g~ip~L 400 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDAR-NKELI-GKHAIPNL 400 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCS-CHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCChh-HHHHH-HhCCHHHH
Confidence 9999999999999999997553 33444 44554443
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=6.3e-28 Score=268.54 Aligned_cols=299 Identities=20% Similarity=0.226 Sum_probs=264.8
Q ss_pred hhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Cc
Q 006099 351 AERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-ED 428 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~ 428 (661)
.+.|.++.|++.|++ ++++.|..|+++|.+++.++++++..+++.|+||.|+.+|++++..+++.|+++|+||+.+ +.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 346899999999975 5689999999999999999999999999999999999999999999999999999999987 45
Q ss_pred chhHhhhCCChHHHHHHHccCC-----HHHHHHHHHHHHHcccCCchhhhh-hhcCCcHHHHHhhhcCCHHHHHHHHHHH
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
+|..+.+.|+++.|+.+|.+.+ ..+...++++|.+++........+ ...++++.|+.++.+++++++..|+++|
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6888899999999999998653 457889999999999876554443 3458999999999999999999999999
Q ss_pred HHhhcccCchHH-HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhCCCHHHHHHH
Q 006099 503 FNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENA 580 (661)
Q Consensus 503 ~nL~~~~~~~~~-iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A 580 (661)
.+|+...+++.. ++..|+++.|+.+|.+++..++..++.+|+|++... ..+..+++.|+++.|+.+|.++++.+++.|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 999988776654 558899999999999999999999999999997654 666788899999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH-HHHHHHHhhhhhHHHh
Q 006099 581 AAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQVQTESQSQI 649 (661)
Q Consensus 581 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~-~~~~~~l~~~~~~~~l 649 (661)
+|+|.||+.+++.....+.+.|+++.|+.++.+++..+++.|+++|.++.... .++...+.+.+....|
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L 406 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 406 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999998643 5566667776665444
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=1.5e-27 Score=266.81 Aligned_cols=299 Identities=20% Similarity=0.232 Sum_probs=266.1
Q ss_pred hhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Cc
Q 006099 351 AERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-ED 428 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~ 428 (661)
.+.|.++.|++.|.. .++..|..|+++|.+++.+++.++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +.
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 346899999999974 5689999999999999999999999999999999999999999999999999999999987 56
Q ss_pred chhHhhhCCChHHHHHHHccCC-----HHHHHHHHHHHHHcccCCchhhhh-hhcCCcHHHHHhhhcCCHHHHHHHHHHH
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSEGTQRGKKDAATAL 502 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 502 (661)
+|..+...|+++.|+.+|...+ ..+...++++|.+++........+ ...+++|.|+.++.+++++++..|+++|
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7999999999999999997653 467889999999999876544443 4458999999999999999999999999
Q ss_pred HHhhcccCchHH-HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCCCHHHHHHH
Q 006099 503 FNLCIYQGNKGK-AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENA 580 (661)
Q Consensus 503 ~nL~~~~~~~~~-iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A 580 (661)
.+|+...+++.. ++..|+++.|+.+|.+++..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 999998776654 55899999999999999999999999999999875 4667888999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh-HHHHHHHHhhhhhHHHh
Q 006099 581 AAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQTESQSQI 649 (661)
Q Consensus 581 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~-~~~~~~~l~~~~~~~~l 649 (661)
+|+|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|+++|.++... ..++...+.+.+.+.-|
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L 425 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPL 425 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999864 35666667776665444
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=7.9e-28 Score=263.89 Aligned_cols=281 Identities=22% Similarity=0.247 Sum_probs=246.0
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcc
Q 006099 351 AERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
.+.|.++.|++.|.++++..|..|+++|++++..+++++..+++.|+||.|+++|+ +++.++++.|+++|+||+.++++
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~ 120 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHh
Confidence 35689999999999999999999999999999888999999999999999999999 88999999999999999999889
Q ss_pred hhHhhhCCChHHHHHHHc--------cC--------CHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcC--
Q 006099 430 KGSIVSSGAVPSIVHVLR--------IG--------SMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEG-- 490 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~--------~~--------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~-- 490 (661)
|..+++ |+++.|+.+|. ++ +.++..+|+++|+||+..++++..+.+. |+++.|+.+|.++
T Consensus 121 ~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 199 (457)
T 1xm9_A 121 KEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 999999 99999999993 22 3456669999999999987889999987 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 006099 491 -------------------------------------------------------------------------------- 490 (661)
Q Consensus 491 -------------------------------------------------------------------------------- 490 (661)
T Consensus 200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence
Q ss_pred -----------------CHHHHHHHHHHHHHhhcccCch-----HHHH-HcCChHHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 491 -----------------TQRGKKDAATALFNLCIYQGNK-----GKAV-RAGVVPTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 491 -----------------~~~~~~~a~~aL~nL~~~~~~~-----~~iv-~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
++.+++.|+++|.||+...... ..++ +.|+++.|+++|.+++..++..|+++|.||+
T Consensus 280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 2345566789999998765432 1234 5899999999999999999999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHHhhCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHH
Q 006099 548 SHPEGKAAIGAAEAVPVLVEVIGNGS------PRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKR 620 (661)
Q Consensus 548 ~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~ 620 (661)
.+++.+..+. .|+++.|+++|..++ +.+...++++|.++..+++.....+.+.|+++.|+.++.++ ++++++
T Consensus 360 ~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~ 438 (457)
T 1xm9_A 360 RHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438 (457)
T ss_dssp TSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHH
Confidence 9988877665 479999999998764 35778999999999998888999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhH
Q 006099 621 KAAQLLERMSRFI 633 (661)
Q Consensus 621 ~A~~lL~~L~~~~ 633 (661)
+|.++|.++..+.
T Consensus 439 ~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 439 AARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHTTSSST
T ss_pred HHHHHHHHHHcch
Confidence 9999999987543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=5.1e-27 Score=261.25 Aligned_cols=296 Identities=20% Similarity=0.232 Sum_probs=261.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHH-hhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCC-Ccch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLA-KRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~-~~~k 430 (661)
..++.+|+.++++|.+.|..|+..++.+. ++.......+++.|+||.|+++|++ +++.+|..|+++|.||+.. ++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45899999999999999999999999864 4444456789999999999999986 4689999999999999764 6678
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCC-----HHHHHHHHHHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGT-----QRGKKDAATALFN 504 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~n 504 (661)
..+++.|+++.|+.+|.+++.++++.|+++|.+|+.+. .++..+.+.|++++|+.++...+ ...+..++++|.|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999875 56888889999999999998754 3467889999999
Q ss_pred hhcccCchHHH-HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHHhhCCCHHHHHHHHH
Q 006099 505 LCIYQGNKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEVIGNGSPRNRENAAA 582 (661)
Q Consensus 505 L~~~~~~~~~i-v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~ 582 (661)
++.+......+ ...|+++.|+.+|.+++.+++..|+++|.+|+..+..+ ..+...|+++.|+.+|.++++.++..|+.
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 99987665443 34689999999999999999999999999999877554 56778899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 006099 583 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 583 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l 649 (661)
+|.+++.+++.....+++.|+++.|+.++.++++.+++.|+++|.+|....+.++..+.+.+.+..|
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999998888888888887766444
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=2.7e-26 Score=256.73 Aligned_cols=298 Identities=22% Similarity=0.269 Sum_probs=268.4
Q ss_pred hhhHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccc
Q 006099 352 ERTKIEILLCKLTSGS-PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDN 429 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~ 429 (661)
..+.++.|++.|.+++ +..|..|++.|.+++..+++++..+++.|++|.|+.+|.+++..+++.|+++|.||+.+ +.+
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4578999999999886 99999999999999998899999999999999999999999999999999999999977 456
Q ss_pred hhHhhhCCChHHHHHHH-ccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 430 KGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+..+...|+++.|+.+| .+.+..++..++++|.+|+...+........|+++.|+.+|.++++.++..|+++|.+|+..
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999 55689999999999999998866666666789999999999999999999999999999988
Q ss_pred cCchH-HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCC-CHHHHHHHHHHHH
Q 006099 509 QGNKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNG-SPRNRENAAAVLV 585 (661)
Q Consensus 509 ~~~~~-~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~ke~A~~~L~ 585 (661)
.+.+. .++..|+++.|+.+|.+++..++..|+.+|++++.. +.....+++.|+++.|+.+|.++ ++.++..|+++|.
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 77654 567899999999999999999999999999999985 46677888899999999999998 8999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh-HHHHHHHHhhhhhHHHh
Q 006099 586 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQTESQSQI 649 (661)
Q Consensus 586 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~-~~~~~~~l~~~~~~~~l 649 (661)
+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++... .+.....+.+.+.+..|
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 99998888888999999999999999999999999999999999976 46666666665555443
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=8.5e-27 Score=258.15 Aligned_cols=288 Identities=22% Similarity=0.257 Sum_probs=240.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
+.+.|+.|++.|.+++.++|..|+.+|++|+.+ +++++..|++.|+||.|+.+|++ .+..++++|+.+|+|||.++.+
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 458999999999999999999999999999985 69999999999999999999997 5889999999999999999999
Q ss_pred hhHhhhCCChHHHHHHHc------------------cCCHHHHHHHHHHHHHcccCCc-hhhhhhhc-CCcHHHHHhhhc
Q 006099 430 KGSIVSSGAVPSIVHVLR------------------IGSMEARENAAATLFSLSVIDE-NKVTIGAS-GAIPPLVTLLSE 489 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~------------------~~~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~-g~i~~Lv~lL~~ 489 (661)
|..|++ |+++.|+++|. ..+.+++++|+++|.||+..++ ++..|.+. |+++.|+.+|++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999995 57999999872 1257899999999999998875 47777765 555677776653
Q ss_pred --------------------------------------------------------------------------CCHHHH
Q 006099 490 --------------------------------------------------------------------------GTQRGK 495 (661)
Q Consensus 490 --------------------------------------------------------------------------~~~~~~ 495 (661)
.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 123444
Q ss_pred HHHHHHHHHhhcccC-----chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh
Q 006099 496 KDAATALFNLCIYQG-----NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG 570 (661)
Q Consensus 496 ~~a~~aL~nL~~~~~-----~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~ 570 (661)
+.|+++|.||+.... ++..+.+.|+++.|+.+|.+++..+++.|+++|.||+.++..+..| ..|++|.|+.+|.
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence 555566666654331 1122234688999999999999999999999999999999888766 6799999999998
Q ss_pred CC--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--ChHHHHHHHHHHHHHHhhHHHHHHHH
Q 006099 571 NG--------SPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRFIEQQKQAQ 640 (661)
Q Consensus 571 ~~--------~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~L~~~~~~~~~~l 640 (661)
++ +..+...|+++|.||+..++.+...+.+.|+++.|+.++.++ .+.+++.|.++|++|..+.+. +..+
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el-r~~~ 484 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL-RKPL 484 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH-HHHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH-HHHH
Confidence 76 467889999999999999999999999999999999999987 899999999999999985544 3344
Q ss_pred hh
Q 006099 641 VQ 642 (661)
Q Consensus 641 ~~ 642 (661)
..
T Consensus 485 kk 486 (584)
T 3l6x_A 485 EK 486 (584)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=6.2e-27 Score=267.50 Aligned_cols=295 Identities=17% Similarity=0.141 Sum_probs=252.7
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHH-HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc-
Q 006099 353 RTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIA-EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED- 428 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~- 428 (661)
...++.+++.|.++ +.+++..|++.|.+|+. ++..|..++ +.|+||.|+.+|++++..++..|+++|.||+.+.+
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 45678888999887 88999999999999996 667777766 57999999999999999999999999999987431
Q ss_pred -----------------------------ch---hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhh
Q 006099 429 -----------------------------NK---GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA 476 (661)
Q Consensus 429 -----------------------------~k---~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~ 476 (661)
++ ..++++|+++.|+.+|.++++.+++.|+|+|.||+.+++++..+.+
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~ 534 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ 534 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12 4677999999999999999999999999999999988889999999
Q ss_pred cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHH---HHcCChHHHHhcccCCCc-cHHHHHHHHHHHhcCCh-h
Q 006099 477 SGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKA---VRAGVVPTLMHLLTEPGG-GMVDEALAILAILSSHP-E 551 (661)
Q Consensus 477 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~i---v~~g~v~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~-~ 551 (661)
.|++++|+.+|.++++.+++.|+++|.||+.+.+....+ ...|++++|+.+|.++.. ..+..|+.+|.||+..+ +
T Consensus 535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999999999999876654322 124699999999976433 33468999999999984 7
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKE-LGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.+..+++.|+++.|+.+|.++++.++..|+++|.||+.+++ ....+.+ .|+++.|+.++.+++..+++.|+++|.+|+
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999998654 5555554 689999999999999999999999999999
Q ss_pred hhHHHHHHHHhh-hhhHHHh
Q 006099 631 RFIEQQKQAQVQ-TESQSQI 649 (661)
Q Consensus 631 ~~~~~~~~~l~~-~~~~~~l 649 (661)
...+.+.+.+.+ .+....|
T Consensus 694 ~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHH
Confidence 866666666666 5555433
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=3.6e-27 Score=248.33 Aligned_cols=243 Identities=22% Similarity=0.217 Sum_probs=218.4
Q ss_pred hhhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCCChHHHHHHHH
Q 006099 351 AERTKIEILLCKLTS-----------GSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTPDSRTQEHAVT 418 (661)
Q Consensus 351 ~~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~i~~~A~~ 418 (661)
.+.|+++.|+..|.+ .++..|..|++.|.+++..+..++..+.. .|+||.|+.+|++++.++++.|++
T Consensus 70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 149 (354)
T 3nmw_A 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149 (354)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHH
Confidence 456899999999953 24678999999999999888888888865 566999999999999999999999
Q ss_pred HHHhccCC--CcchhHhhhCCChHHHHHHH-ccCCHHHHHHHHHHHHHccc-CCchhhhhh-hcCCcHHHHHhhhcCCH-
Q 006099 419 ALLNLSIC--EDNKGSIVSSGAVPSIVHVL-RIGSMEARENAAATLFSLSV-IDENKVTIG-ASGAIPPLVTLLSEGTQ- 492 (661)
Q Consensus 419 ~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~- 492 (661)
+|.||+.. +++|..|.+.|+++.|+++| ++++.++++.|+.+|++|+. .++++..+. ..|+++.|+++|.+++.
T Consensus 150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 99999974 56899999999999999975 56789999999999999998 557888888 67999999999998754
Q ss_pred ---HHHHHHHHHHHHhhc----ccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhc-CChhhHHHHHhCCChHH
Q 006099 493 ---RGKKDAATALFNLCI----YQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILS-SHPEGKAAIGAAEAVPV 564 (661)
Q Consensus 493 ---~~~~~a~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~~~~~~i~~~g~i~~ 564 (661)
.+++.|+++|.||+. .++++..+++.|+++.|+.+|.+++..+++.|+++|.||+ .+++.+..+++.|++|.
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~ 309 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 489999999999996 7778888999999999999999999999999999999999 46889999999999999
Q ss_pred HHHHhhCCCHHHHHHHHHHHHHHhcCCHH
Q 006099 565 LVEVIGNGSPRNRENAAAVLVHLCAGDQQ 593 (661)
Q Consensus 565 Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~ 593 (661)
|+++|+++++.+++.|+++|.+|+.+.+.
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999988764
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=1.1e-25 Score=251.74 Aligned_cols=294 Identities=21% Similarity=0.228 Sum_probs=264.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCCCC-hHHHHHHHHHHHhccCC-Ccch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPD-SRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~-~~i~~~A~~~L~nLs~~-~~~k 430 (661)
..++.|++.|.+++++.|..|+..|+.++.... .+...+++.|++|.|+.+|++++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999976554 67888999999999999999986 99999999999999986 6778
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhh-hcCCHHHHHHHHHHHHHhhcc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLL-SEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~ 508 (661)
..++..|+++.|+.+|.++++++++.|+++|.+|+... .++..+...|+++.|+.+| .+.+..++..|+++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88899999999999999999999999999999999875 4688888899999999999 567899999999999999998
Q ss_pred cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
.+........|+++.|+.+|.+++..++..|+.+|.+|+..+..+ ..+++.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 666555667899999999999999999999999999999887655 6778889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHH
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 647 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~ 647 (661)
+.+++.....+++.|+++.|+.++.++ ++.+++.|.++|.+|....+.....+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~ 374 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 374 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Confidence 999988888999999999999999999 999999999999999986666666666655543
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=6.3e-26 Score=253.72 Aligned_cols=296 Identities=20% Similarity=0.229 Sum_probs=261.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHH-hhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCC-cch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLA-KRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE-DNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~-~~k 430 (661)
..++.+++.+.++|++.|..|+..++.+. .+.......+++.|+||.|+.+|+. .++.+|..|+++|.|++.+. +++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35889999999999999999999999864 4444557789999999999999975 56899999999999998764 567
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCC-----HHHHHHHHHHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGT-----QRGKKDAATALFN 504 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~n 504 (661)
..+++.|+++.|+.+|.+++.++++.|+++|.+|+.++ +++..+...|++++|+.+|...+ ......++++|.|
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999875 67888999999999999998654 3467889999999
Q ss_pred hhcccCchHHH-HHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHHhhCCCHHHHHHHHH
Q 006099 505 LCIYQGNKGKA-VRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG-KAAIGAAEAVPVLVEVIGNGSPRNRENAAA 582 (661)
Q Consensus 505 L~~~~~~~~~i-v~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~ 582 (661)
++.+......+ ...|+++.|+.+|.+++..++..|+++|.+++..+.. ...+...|+++.|+.+|.++++.++..|+.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987655433 3468999999999999999999999999999987755 466778899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 006099 583 VLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQI 649 (661)
Q Consensus 583 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~l 649 (661)
+|.+|+.+++.....+.+.|+++.|+.++.++++.+++.|+++|.+++...+.+...+.+.+.+..|
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 9999999999999999999999999999999999999999999999999888888888887766443
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=5.2e-25 Score=246.44 Aligned_cols=298 Identities=17% Similarity=0.150 Sum_probs=265.3
Q ss_pred hhhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccc
Q 006099 352 ERTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDN 429 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~ 429 (661)
..+.++.|++.|.++ ++.+|..|++.|.+++..++.++..+++.|++|.|+.+|++++..+++.|+++|.+++.+ +.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 357899999999987 899999999999999988888999999999999999999999999999999999999987 467
Q ss_pred hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 430 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+..+...|+++.|+.+|.+.+.+++..|+++|.+|+... +........++++.|+.++.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888889999999999999989999999999999999876 5555666789999999999999999999999999999976
Q ss_pred cC-chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q 006099 509 QG-NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 586 (661)
Q Consensus 509 ~~-~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~ 586 (661)
.+ ....+++.|+++.|+.+|.+++..++..|+.+|.+++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54 455677889999999999998999999999999999975 4566778888999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH-H--HHHHHHhhhhhHHHh
Q 006099 587 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI-E--QQKQAQVQTESQSQI 649 (661)
Q Consensus 587 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~-~--~~~~~l~~~~~~~~l 649 (661)
|+.+++.....+++.|+++.|+.++.++++.++..|.++|.++.... + ...+.+.+.+.+..|
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L 433 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHH
Confidence 99988888888889999999999999999999999999999998753 2 455555555544433
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=9.7e-25 Score=244.22 Aligned_cols=294 Identities=21% Similarity=0.228 Sum_probs=262.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCC-Ccch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTP-DSRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~-~~~k 430 (661)
+.++.|+..|.+++++.|..|+..|+.+... ...++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.. ++++
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 5689999999999999999999999998643 345667888999999999999997 899999999999999986 4567
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
..++..|+++.|+.+|.++++++++.|+++|.+|+... +++..+...|+++.|+.++.+.+..++..|+++|.+|+...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 77889999999999999999999999999999999875 57888888899999999999989999999999999999876
Q ss_pred -CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 510 -GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 510 -~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
+........|+++.|+.+|.+++..++..|+.+|.+|+... +....+++.|+++.|+.+|.+.++.++..|+++|.++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 55556667899999999999999999999999999999764 5677888889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHH
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 647 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~ 647 (661)
+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++....+.+.+.+.+.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 386 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 999888888889999999999999999999999999999999976666665555555443
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=2e-24 Score=235.78 Aligned_cols=295 Identities=19% Similarity=0.166 Sum_probs=259.5
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-cchh
Q 006099 354 TKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~-~~k~ 431 (661)
+.++.|++.|.++ ++..|..|++.|.+++..++++...+.+.|++|.|+.+|+++++.+++.|+++|.+++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 7899999999998 8999999999999999888888888889999999999999999999999999999999874 5788
Q ss_pred HhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006099 432 SIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
.+...|+++.++.+|.+ .+.+++..|+++|.+|+... +........++++.|+.++.++++.++..++++|.+|+...
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 88899999999999996 58999999999999999765 32222223799999999999999999999999999999865
Q ss_pred -CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 510 -GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 510 -~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
+....++..|+++.|+.+|.+++..++..|+.+|.+++...+ .+..+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445567789999999999999999999999999999998754 456678889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh-HHHHHHHHhhhhhHHH
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF-IEQQKQAQVQTESQSQ 648 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~-~~~~~~~l~~~~~~~~ 648 (661)
+.+++.....+.+.|+++.|+.++.+++++++..|.++|.++... .+...+.+.+.+.+..
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~ 365 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP 365 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 998888888889999999999999999999999999999999865 3455555555554433
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=5e-25 Score=220.88 Aligned_cols=238 Identities=28% Similarity=0.314 Sum_probs=222.3
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCC-cchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-Cchhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE-DNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVT 473 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~ 473 (661)
|.||.|+.+|++++++++..|+++|.+++... +++..+.+.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999998775 4888999999999999999999999999999999999998 578899
Q ss_pred hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhh-cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-h
Q 006099 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLC-IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-E 551 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~-~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~ 551 (661)
+.+.|+++.|+.+++++++.++..|+++|.+|+ ..++++..+++.|+++.|+.+|.++++.++..|+.+|.+|+... .
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 56677888889999999999999999999999999999999855 5
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+..+.+.|+++.|+.++.++++.++..|+++|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 55788899999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred hH
Q 006099 632 FI 633 (661)
Q Consensus 632 ~~ 633 (661)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.1e-25 Score=221.52 Aligned_cols=239 Identities=30% Similarity=0.353 Sum_probs=221.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~ 432 (661)
+.++.|++.|.+++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|++++..++..|+++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4689999999999999999999999999988888999999999999999999999999999999999999987 778999
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHccc-CCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++..+.+.|+++.|+++++++++.++..|+++|.||+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 557888899999999999999999999999999999999986554
Q ss_pred -hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 512 -KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 512 -~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
+..+++.|+++.|+.+|.++++.++..|+.+|.+++. .++.+..+.+.|+++.|+++++++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999998 55677888899999999999999999999999999999997
Q ss_pred CCH
Q 006099 590 GDQ 592 (661)
Q Consensus 590 ~~~ 592 (661)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 653
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2.1e-25 Score=224.41 Aligned_cols=236 Identities=25% Similarity=0.357 Sum_probs=217.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k~~ 432 (661)
...+.++..|.+++++.|..|++.|+++...+..++..+.+.|++|.|+.+|+++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458899999999999999999999987665578888999999999999999999999999999999999998 4778999
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh-hhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc-C
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ-G 510 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~ 510 (661)
+.+.|+++.|+.+|++++++++..|+++|.+|+..++++ ..+...|+++.|+++|.++++.++..|+++|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 88888999999999999999999999999999999865 4
Q ss_pred chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 511 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
++..+++.|+++.|+.+|.+++..++..|+.+|.+|+. .++.+..+.+.|+++.|+.+++++++.+++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 45567789999999999999999999999999999995 55777888999999999999999999999999999999985
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=2.3e-23 Score=227.36 Aligned_cols=282 Identities=21% Similarity=0.208 Sum_probs=253.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCCC--cc
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSICE--DN 429 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~--~~ 429 (661)
.+.++.|++.|.++++.++..|+..|.+++..++.++..+.+.|++|.|+.+|++ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4789999999999999999999999999998888899999999999999999996 68999999999999999763 33
Q ss_pred hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 430 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+..+ ..|+++.|+.+|.+++.+++..++++|.+|+... +....+...|+++.|+.++.+++..++..|+++|.+|+..
T Consensus 186 ~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 3333 3899999999999999999999999999999865 4566777889999999999999999999999999999987
Q ss_pred cCchH-HHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q 006099 509 QGNKG-KAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 586 (661)
Q Consensus 509 ~~~~~-~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~ 586 (661)
.+... .+++.|+++.|+.+|.+++..++..|+.+|.+++. .++....+++.|+++.|+.+|.++++.+|..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66544 56788999999999999999999999999999996 55677788888999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHH
Q 006099 587 LCAG-DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 587 L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
++.+ ++.....+.+.|+++.|+.++.++++++++.|.++|.++....+.
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 9976 677788888999999999999999999999999999999876653
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=1.5e-24 Score=218.14 Aligned_cols=236 Identities=24% Similarity=0.349 Sum_probs=219.0
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhc-cCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-Cchhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNL-SICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVT 473 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~ 473 (661)
...+.++..|+++|++++..|+++|.++ +.+++++..+++.|+++.|+.+|++++++++..|+++|.+|+.. ++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4589999999999999999999999775 44567788899999999999999999999999999999999984 578889
Q ss_pred hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch-HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-h
Q 006099 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK-GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-E 551 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~ 551 (661)
+.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+.+|.+++..++..|+.+|.+|+..+ +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 78889999999999999999999999999999999854 6
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999864
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=8.1e-24 Score=236.08 Aligned_cols=293 Identities=21% Similarity=0.170 Sum_probs=256.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~ 429 (661)
+.+.++.|+..|+++++.++..|+..|.+++. +..++..+.. .|+++.|+++|.++ +..++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 35789999999999999999999999999996 5556666664 48999999999754 899999999999999999889
Q ss_pred hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 430 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+..+.+.|+++.|+.+|++++++++..|+++|.+|+..+ ..+..+.+.|+++.|++++.+++.+.+..++.+|.+|+..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999885 5677777889999999999999999999999999999975
Q ss_pred -cCchHHHHHcCChHHHHhcccCCC-ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q 006099 509 -QGNKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVH 586 (661)
Q Consensus 509 -~~~~~~iv~~g~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~ 586 (661)
++++..+++.|+++.|+.+|.+.+ ......++.+|.+|+.+++++..+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567888889999999999998754 456667899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHH
Q 006099 587 LCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQSQ 648 (661)
Q Consensus 587 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~~ 648 (661)
|+...+... ...|+++.|+.++.++++.++..|.++|.+|+...+..+..+.+.+.+..
T Consensus 254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 998754211 12368999999999999999999999999999877666777766665533
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=3.9e-23 Score=230.54 Aligned_cols=293 Identities=23% Similarity=0.246 Sum_probs=256.8
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccch
Q 006099 353 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k 430 (661)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.+++.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999865 89999999999999986 577999999999999999999999999999999999999987 4567
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcCC-HHHHHHHHHHHHHhhcc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIY 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 508 (661)
..+.+.|+++.|+.+|.+++.+++..++.+|.+|+.. ++++..+.+.|+++.|++++++++ ...+..++.+|.+|+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 7888999999999999999999999999999999986 468888999999999999999875 45567788999999999
Q ss_pred cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
++++..+++.|+++.|+.++.+++..++..++++|.+|+....... ...|+++.|+.++++.++.+++.|+++|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999899999999999999998754321 12368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC--ChHHHHHHHHHHHHHHhhH---HHHHHHHhhhhhHHH
Q 006099 589 AGDQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAAQLLERMSRFI---EQQKQAQVQTESQSQ 648 (661)
Q Consensus 589 ~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~~lL~~L~~~~---~~~~~~l~~~~~~~~ 648 (661)
.+++..+..+.+.|+++.|+.++.+. ++.++..|..+|.+|.... +..+..+.+.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~ 359 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhH
Confidence 99888999999999999999999863 4799999999999998643 334555555555433
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=238.79 Aligned_cols=291 Identities=21% Similarity=0.181 Sum_probs=256.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcch
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k 430 (661)
.+.++.|+..|++.++.+|..|+..|.+++... .++..+.. .|+++.|+++|.++ +.+++..|+.+|.+|+.+.+++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 578999999999999999999999999999754 56666665 48999999999875 8999999999999999998899
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc-c
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI-Y 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~ 508 (661)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ ..+..+.+.|+++.|+++|++++.+.+..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999875 567777789999999999999999888888999999996 6
Q ss_pred cCchHHHHHcCChHHHHhcccCCC-ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
++++..+++.|+++.|+.+|.+.+ ..++..++.+|.+|+..++++..+++.|+++.|+.++.++++.++..++++|.+|
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 778888999999999999998744 5677889999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHH
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQS 647 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~~ 647 (661)
|...+.. ....++++.|+.++.++++.+++.|.++|.+|+...+..+..+.+.+.+.
T Consensus 252 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 252 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp GGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred hhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 9865421 11226899999999999999999999999999987766666666655543
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=232.40 Aligned_cols=294 Identities=22% Similarity=0.248 Sum_probs=256.4
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccch
Q 006099 353 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k 430 (661)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999875 89999999999999987 567999999999999999999999999999999999999876 4567
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHccc-CCchhhhhhhcCCcHHHHHhhhcCC-HHHHHHHHHHHHHhhcc
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSV-IDENKVTIGASGAIPPLVTLLSEGT-QRGKKDAATALFNLCIY 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 508 (661)
..+.+.|+++.|+.+|++++.+++..++.+|.+|+. .++++..+.+.|+++.|++++++++ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 778899999999999999999889999999999997 5678999999999999999999875 56778999999999999
Q ss_pred cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
++++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|+.+|++.++.+++.|+++|.+|+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999999764321 112368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCHHHHHHhhhcC-C-hHHHHHHHHHHHHHHhhH---HHHHHHHhhhhhHHHh
Q 006099 589 AGDQQYLAEAKELGVMGPLVDLAQNG-T-DRGKRKAAQLLERMSRFI---EQQKQAQVQTESQSQI 649 (661)
Q Consensus 589 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~-~~~k~~A~~lL~~L~~~~---~~~~~~l~~~~~~~~l 649 (661)
.+++..+..+.+.|+++.|+.++.+. + +.++..|.++|.+|.... +..+..+...+.+..|
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L 357 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHH
Confidence 99888999999999999999999874 3 799999999999998532 2344444444444333
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=3.9e-22 Score=232.57 Aligned_cols=290 Identities=21% Similarity=0.177 Sum_probs=254.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHH-hCCHHHHHHhhCCC-ChHHHHHHHHHHHhccCCCcch
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAE-AGAIPLLVGLLSTP-DSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~-~~~i~~~A~~~L~nLs~~~~~k 430 (661)
.+.++.|+..|.+.++.+|..|+..|.+++. +..++..+.. .|+++.|+.+|+++ +..++..|+.+|.+|+.+.+++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 5789999999999999999999999999997 4556667764 48999999999865 8999999999999999998888
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc-c
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI-Y 508 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~ 508 (661)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999885 556677788999999999999999999999999999996 4
Q ss_pred cCchHHHHHcCChHHHHhcccCCCc-cHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGG-GMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
++++..+++.|+++.|+.+|.+.+. .....++.+|.+|+..+..+..+++.|+++.|+.++.++++.++..|+++|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 6678888899999999999987544 456678999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhhhhH
Q 006099 588 CAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQTESQ 646 (661)
Q Consensus 588 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~ 646 (661)
+...+.. ....++++.|+.++.+.++.+++.|.++|.+|+......+..+.+.+.+
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i 443 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHH
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 9765421 1123689999999999999999999999999998776666666665544
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=199.36 Aligned_cols=196 Identities=21% Similarity=0.243 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccc
Q 006099 353 RTKIEILLCKLTSGSP--EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDN 429 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~--~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~ 429 (661)
..+++.+++.|.++++ +.|..|+..|.+++.+++.++..+++.|+||+|+++|++++.++|+.|+++|.||+.+ ++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3578999999999988 8899999999999999999999999999999999999999999999999999999984 789
Q ss_pred hhHhhhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh---c-------------CCH
Q 006099 430 KGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS---E-------------GTQ 492 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------------~~~ 492 (661)
|..|.+.|+|+.|+++|. +++.+++++|+.+|++||..+++|..|++. ++++|++++. + .+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 468999999999999999999999999875 6999998763 1 256
Q ss_pred HHHHHHHHHHHHhhcc-cCchHHHHHc-CChHHHHhcccC------CCccHHHHHHHHHHHhcCC
Q 006099 493 RGKKDAATALFNLCIY-QGNKGKAVRA-GVVPTLMHLLTE------PGGGMVDEALAILAILSSH 549 (661)
Q Consensus 493 ~~~~~a~~aL~nL~~~-~~~~~~iv~~-g~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~ 549 (661)
.++.+|..+|+||+.. +++|..|.+. |+|+.|+.+++. .+...++.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999985 4889899875 778999999975 2567899999999999864
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=2.4e-21 Score=225.95 Aligned_cols=291 Identities=20% Similarity=0.183 Sum_probs=254.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k~ 431 (661)
.+.++.|++.|.++++..+..|+..|.+++......+..+.+.|++|.|+.+|++++..++..++.+|.+++. +++++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 4789999999999999999999999999999888889999999999999999999999999999999999986 467888
Q ss_pred HhhhCCChHHHHHHHccCC-HHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 432 SIVSSGAVPSIVHVLRIGS-MEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
.+...|+++.|+.+|++++ ...+..++.+|.+|+..+.++..+.+.|+++.|+.++.+++..++..|+++|.+|+....
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 9999999999999999875 556778899999999988999999999999999999999999999999999999997654
Q ss_pred chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhC-CC-HHHHHHHHHHHHHH
Q 006099 511 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGN-GS-PRNRENAAAVLVHL 587 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~-~~~ke~A~~~L~~L 587 (661)
.. ....++++.|+.+|.+.+..++..|+.+|.+|+..+ +.+..+.+.|+++.|+.+|.+ ++ +.+++.|+++|.+|
T Consensus 393 ~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 393 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp TC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 32 123478999999999999999999999999999875 678888999999999999975 33 48999999999999
Q ss_pred hcCCHH---HHHHHHHcCCHHHHHHhhhcCCh-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhH
Q 006099 588 CAGDQQ---YLAEAKELGVMGPLVDLAQNGTD-RGKRKAAQLLERMSRFIEQQKQAQVQTESQ 646 (661)
Q Consensus 588 ~~~~~~---~~~~~~~~g~i~~L~~ll~~~~~-~~k~~A~~lL~~L~~~~~~~~~~l~~~~~~ 646 (661)
+...+. ....+...|+++.|+.++.+++. .+++.|+++|.+|....+.+ ..+.+.+.+
T Consensus 471 ~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i 532 (780)
T 2z6g_A 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAI 532 (780)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHH
T ss_pred HhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCH
Confidence 976543 34577889999999999998875 99999999999999765544 566665554
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-21 Score=220.35 Aligned_cols=280 Identities=16% Similarity=0.137 Sum_probs=237.5
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh-------------------------------------h-hHHHH
Q 006099 352 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNA-------------------------------------D-NRVAI 392 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~-------------------------------------~-~r~~i 392 (661)
+.+.++.|+..+++ .+......++..|.|++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 45779999999985 677788889999998875221 1 56778
Q ss_pred HHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHH---HHHHHHHHHHHcccCCc
Q 006099 393 AEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSME---ARENAAATLFSLSVIDE 469 (661)
Q Consensus 393 ~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e---~~~~a~~~L~~Ls~~~~ 469 (661)
.+.|+||.|+.+++++++.+|+.|+++|.||+.+.++|..+++.|+++.|+.+|.+++.. .+..|+.+|.+|....+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999988644 89999999999987655
Q ss_pred hhhhhhh---cCCcHHHHHhhhcC--CH------------HHHHHHHHHHHHhhcccCc-----hHHHHHc-CChHHHHh
Q 006099 470 NKVTIGA---SGAIPPLVTLLSEG--TQ------------RGKKDAATALFNLCIYQGN-----KGKAVRA-GVVPTLMH 526 (661)
Q Consensus 470 ~~~~i~~---~g~i~~Lv~lL~~~--~~------------~~~~~a~~aL~nL~~~~~~-----~~~iv~~-g~v~~Lv~ 526 (661)
....+.. .|+|++|+++|..+ .. .-+..|+.||.||+..+++ +..++.. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 4444422 39999999999832 11 1277999999999998743 6778885 99999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCChhhH-HHHHhCC------ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006099 527 LLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAE------AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAK 599 (661)
Q Consensus 527 lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g------~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~ 599 (661)
+|.+.+..++..|+.++.||+.++++. ..+...+ .++.|+.++++++..+|..|+++|.+++...+..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999989999999999999999999875 3554322 378999999999999999999999999888888888888
Q ss_pred Hc-CCHHHHHHhhhc--CChHHHHHHHHHHHHHHh
Q 006099 600 EL-GVMGPLVDLAQN--GTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 600 ~~-g~i~~L~~ll~~--~~~~~k~~A~~lL~~L~~ 631 (661)
+. ++++.|+.++.+ +++.++..++.++.+|..
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 76 799999999998 899999999999999996
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=195.62 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=173.0
Q ss_pred CHHHHHHhhCCCCh--HHHHHHHHHHHhccC-CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-Cchhh
Q 006099 397 AIPLLVGLLSTPDS--RTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKV 472 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~--~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~ 472 (661)
.+|.|+++|+++++ .+|..|++.|.+|+. ++++|..|.+.|+|+.|+.+|+++++++++.|+++|.+|+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999988 899999999999996 577899999999999999999999999999999999999985 57999
Q ss_pred hhhhcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC----------------CCccH
Q 006099 473 TIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE----------------PGGGM 535 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~----------------~~~~~ 535 (661)
.|.+.|+||+|+++|. +++.++++.|+.+|+||+..+++|..+++. ++++|+.++.. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999988874 69999997741 24588
Q ss_pred HHHHHHHHHHhcC-ChhhHHHHHhC-CChHHHHHHhhCC------CHHHHHHHHHHHHHHhcC
Q 006099 536 VDEALAILAILSS-HPEGKAAIGAA-EAVPVLVEVIGNG------SPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 536 ~~~al~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~~ke~A~~~L~~L~~~ 590 (661)
+..|..+|.||+. ++++|..|.+. |+|+.|+.+++.+ +...+|+|+.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999987 56999999987 6689999999852 467899999999999864
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=2.5e-21 Score=188.94 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=178.9
Q ss_pred HhCCHHHHHHhhCCCChHHHHHHHHHHHhccC-CCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-Cchh
Q 006099 394 EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI-CEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENK 471 (661)
Q Consensus 394 ~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~ 471 (661)
..|..|.|+.+|+++|..++..|+++|.+++. +++++..+.+.|+++.|+.+|.+++++++..|+++|.+|+.. ++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45789999999999999999999999999995 467788899999999999999999999999999999999965 4678
Q ss_pred hhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-
Q 006099 472 VTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH- 549 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~- 549 (661)
..+.+.|+++.|+.+|+++++.++..|+++|.||+...+. +..+++.|+++.|+.+|.+++..++..|+.+|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999999999999976544 45778999999999999999999999999999999988
Q ss_pred hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 550 PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 550 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 6788889999999999999999999999999999999985
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=7.3e-21 Score=185.57 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=180.7
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc-ccCch
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI-YQGNK 512 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~ 512 (661)
..|+.+.|+.+|++.+++++..|+++|.+|+.. ++++..+.+.|+++.|+++|.++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 568899999999999999999999999999955 4678889999999999999999999999999999999995 55677
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
..+++.|+++.|+.+|.+++..++..|+++|.|++.. ++.+..+.+.|+++.|+.+|+++++.+++.|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 7888999999999999999999999999999999964 466678889999999999999999999999999999999998
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 592 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
+.....+.+.|+++.|+.++.++++.+++.|.++|.+|++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9899999999999999999999999999999999999875
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-19 Score=203.34 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=236.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-CCHHHHHHhhCC-CChHHHHHHHHHHHhccCCCc--
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLST-PDSRTQEHAVTALLNLSICED-- 428 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~-- 428 (661)
....+.+++.|.+++.+.+..|++.|..++. +++.|..+++. |+++.|+.++++ .+..+...++.+|.||+.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3567888888888887889999999999986 77778888765 679999999995 788899999999999976321
Q ss_pred -------------------------------------chhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh
Q 006099 429 -------------------------------------NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 429 -------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
++..+.++|+++.|+.+++++++.+++.|+++|.+|+.+.++|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3456678999999999999999999999999999999999999
Q ss_pred hhhhhcCCcHHHHHhhhcCCHH---HHHHHHHHHHHhhcccCchHHHHH---cCChHHHHhcccC-CCcc----------
Q 006099 472 VTIGASGAIPPLVTLLSEGTQR---GKKDAATALFNLCIYQGNKGKAVR---AGVVPTLMHLLTE-PGGG---------- 534 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~nL~~~~~~~~~iv~---~g~v~~Lv~lL~~-~~~~---------- 534 (661)
..+++.|++++|+++|.+++.. ++..|+.+|.+|....+....+-. .|+|++|+.+|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999998654 899999999999987765543311 3899999999973 2211
Q ss_pred --H-HHHHHHHHHHhcCCh-----hhHHHHHhC-CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc----
Q 006099 535 --M-VDEALAILAILSSHP-----EGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKEL---- 601 (661)
Q Consensus 535 --~-~~~al~~L~~L~~~~-----~~~~~i~~~-g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~---- 601 (661)
+ +..|+.+|.||+..+ +.+..++.. |+++.|..+|.++++.+|..|++++.||+.+.......+...
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 2 568999999999987 347888886 999999999999999999999999999997543211233221
Q ss_pred --CCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 006099 602 --GVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQQKQAQVQT 643 (661)
Q Consensus 602 --g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~~~~l~~~ 643 (661)
+.++.|+.++..++.++++.|.++|.++....+...+.+.+.
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 237899999999999999999999999976555544444443
No 37
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.80 E-value=3e-20 Score=172.81 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=71.4
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 331 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 331 (661)
..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.+++...+.||..++++|+.|+..|+|.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 3678999999999999999999999999999999999976568999999999999999999999999999999884
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=3.9e-18 Score=174.77 Aligned_cols=237 Identities=18% Similarity=0.178 Sum_probs=191.6
Q ss_pred hhhHHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCChHHHHHHHH
Q 006099 352 ERTKIEILLCKLTSG------------SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAVT 418 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~i~~~A~~ 418 (661)
+...++..+..|.+. +.+.+..|+..|..++. +.++...+...|++|+|+. +|+++++.++..|++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH
Confidence 446677888888764 23578889999999996 6778888999999999999 999999999999999
Q ss_pred HHHhccCC-CcchhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCc-hhhhhhhcCCcHHHHHhhhcCCHHHH
Q 006099 419 ALLNLSIC-EDNKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDE-NKVTIGASGAIPPLVTLLSEGTQRGK 495 (661)
Q Consensus 419 ~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~ 495 (661)
+|+|++.+ +.++..+++.|+++.|+.+|+++ +.++++.|+++|.+|+.+.. ....+...|+++.|+.+|++++..++
T Consensus 105 ~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99999986 45788899999999999999965 78999999999999997654 56677888999999999999999999
Q ss_pred HHHHHHHHHhhcc-cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh-hHHHHHhC-CChHHH----HHH
Q 006099 496 KDAATALFNLCIY-QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGAA-EAVPVL----VEV 568 (661)
Q Consensus 496 ~~a~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~~-g~i~~L----v~l 568 (661)
..|+++|.+|+.. ++.+..+++.|+++.|+.+|.+++..+++.|+.+|.+|+.... ........ ..+..+ .+-
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999876 4567788899999999999999999999999999999988732 22222221 122222 233
Q ss_pred hhCC--CHHHHHHHHHHHHHHhc
Q 006099 569 IGNG--SPRNRENAAAVLVHLCA 589 (661)
Q Consensus 569 L~~~--~~~~ke~A~~~L~~L~~ 589 (661)
++.. +.+..+.|..++-+...
T Consensus 265 lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 265 LQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHHHHHHcC
Confidence 3322 34566677776666553
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=1.8e-19 Score=152.14 Aligned_cols=78 Identities=29% Similarity=0.426 Sum_probs=72.2
Q ss_pred CCCCCCCCCccCcCCcccccCCeecCCC-ccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCCC
Q 006099 253 HKAPVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGIE 331 (661)
Q Consensus 253 ~~~~~~p~~f~CpIc~~~m~dPv~~~cg-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 331 (661)
.....+|++|.||||+++|.|||+++|| |+|||.||.+|+.. +.+||.|+.+++...+.||..++++|+.|+..+++.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 3445789999999999999999999999 99999999999984 789999999999999999999999999999998874
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=4.9e-18 Score=174.00 Aligned_cols=187 Identities=17% Similarity=0.151 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHH-hhhcCCHHHHHHHHHHHHHhhcccC-chHHHHHcCChHHHHhc
Q 006099 450 SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHL 527 (661)
Q Consensus 450 ~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~l 527 (661)
+.+.+..|+..|.+++...++...+...|++++|+. +|.++++.++..|+++|.|++.+.+ .+..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456788999999999998888888999999999999 9999999999999999999998654 56678899999999999
Q ss_pred ccC-CCccHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 006099 528 LTE-PGGGMVDEALAILAILSSH-PEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMG 605 (661)
Q Consensus 528 L~~-~~~~~~~~al~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~ 605 (661)
|.+ ++..++..|+++|.|++.+ +.+...+.+.|+++.|+.+|+++++.++..|+|+|.+|+.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 985 5788999999999999865 56677888999999999999999999999999999999998888999999999999
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHhhHHHH
Q 006099 606 PLVDLAQNGTDRGKRKAAQLLERMSRFIEQQ 636 (661)
Q Consensus 606 ~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~~ 636 (661)
.|+.++.+++..+++.|..+|.+|....+..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999998775443
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=2.4e-18 Score=176.00 Aligned_cols=220 Identities=22% Similarity=0.328 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhccCCchH-HHHHhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHH-HHHhhccCCCh
Q 006099 70 EALASAKELLRFGSEGSKI-YLVLERGEIMTKFYEVTAQLEQALSAISYENLDISDEVKEQVELVLSQ-FRRAKGRVDAP 147 (661)
Q Consensus 70 ~~l~~a~~ll~~c~~~sk~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~s~~v~e~i~~~~~~-~~~~~~~~~~~ 147 (661)
.++...+..++.-....+. |.+...-.-..++++....+.+++..-|-....+...+...+...... +........+.
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T 2c2l_A 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 135 (281)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444433333344 334555555668999999999999988876656666665555444332 33333334444
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhHhhhcc
Q 006099 148 DVELYEELLSLYNKNNDVTPDPAVLRGLAEKLQLMG-IADLTQESLALHEMVASTGGDPGETIEKMSMLLKKIKDFVQTE 226 (661)
Q Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 226 (661)
+.++...+..++.+..+ +.+...-..+.+.. ...+...+..+.... .+..++...++.+..
T Consensus 136 ~~~i~~~l~~l~~~~~~-----~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------~~~~~~a~~~f~~a~------ 197 (281)
T 2c2l_A 136 ESELHSYLTRLIAAERE-----RELEECQRNHEGHEDDGHIRAQQACIEAKH-------DKYMADMDELFSQVD------ 197 (281)
T ss_dssp CCHHHHHHHHHHHHHHH-----HHHTTTSGGGTTTSCHHHHTHHHHHHHHHH-------HHHHHHHHHHHHHSS------
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHhhhccccchhhhhhHHHHHHHHH-------HHHHHHHHHHHHhhh------
Confidence 44444444333321100 01111111112111 111111111111100 011122222222220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 227 NPNLDAPLKEKNPGPSQGGQASSDRNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
+.....++|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++
T Consensus 198 ------------------------~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 198 ------------------------EKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp ------------------------CTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred ------------------------ccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 01123467899999999999999999999999999999999998777799999999
Q ss_pred cCCCCccchhhhhhHHHHHHHcCCC
Q 006099 307 TSTAVTPNYVLRSLIAQWCEANGIE 331 (661)
Q Consensus 307 ~~~~l~~n~~l~~~i~~~~~~~~~~ 331 (661)
+...+.||..++++|+.|+..++|.
T Consensus 254 ~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 254 TQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred chhcCcccHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999874
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.76 E-value=3.3e-19 Score=146.66 Aligned_cols=74 Identities=32% Similarity=0.481 Sum_probs=69.2
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcC
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANG 329 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (661)
...+|++|.||||+++|.|||+++|||+|||.||.+|+. ++.+||.|+.+++...+.||..++++|+.|+..++
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999999999999999999 46899999999999999999999999999998765
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.76 E-value=5.2e-19 Score=149.84 Aligned_cols=76 Identities=33% Similarity=0.469 Sum_probs=70.8
Q ss_pred CCCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCC
Q 006099 254 KAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 330 (661)
Q Consensus 254 ~~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 330 (661)
....+|++|.||||+++|.|||+++|||+|||.||.+|+. ++.+||.|+.+++...+.||..++++|+.|+..|+.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 3456799999999999999999999999999999999998 678999999999999999999999999999998764
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=5.8e-18 Score=137.49 Aligned_cols=75 Identities=76% Similarity=1.340 Sum_probs=71.1
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 330 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 330 (661)
..++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|+.++....+.+|..++++|+.|..++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999999997789999999999999999999999999999999886
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-16 Score=131.65 Aligned_cols=73 Identities=29% Similarity=0.492 Sum_probs=64.6
Q ss_pred CCCCccCcCCcccccCCeecC-CCccccHHHHHHHHHhC-----CCCCCC--CCCC-CcCCCCccchhhhhhHHHHHHHc
Q 006099 258 IPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAG-----HRTCPK--TQQT-LTSTAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~~-----~~~cP~--~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 328 (661)
.+++|.||||+++|.|||+++ |||+|||.||.+|+..+ ..+||. |+.. +....+.||..++++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 467899999999999999996 99999999999999853 469999 5544 88899999999999999999876
Q ss_pred CC
Q 006099 329 GI 330 (661)
Q Consensus 329 ~~ 330 (661)
+.
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.53 E-value=4.2e-13 Score=147.05 Aligned_cols=288 Identities=18% Similarity=0.177 Sum_probs=232.4
Q ss_pred hhhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC--CChHHHHHHHHHHHhccC-CC
Q 006099 352 ERTKIEILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST--PDSRTQEHAVTALLNLSI-CE 427 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~i~~~A~~~L~nLs~-~~ 427 (661)
..++|+.|...+.+ .-.+.++.|+..|+.+++. ++..++ .+++|.|+..|+. .|.++...++.+|.++-. ++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 35899999999986 4578999999999999863 444443 5679999999987 488999999999988743 22
Q ss_pred c-----------------chhH-hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhhhhhhc-CCcHHHHHh
Q 006099 428 D-----------------NKGS-IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGAS-GAIPPLVTL 486 (661)
Q Consensus 428 ~-----------------~k~~-i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~-g~i~~Lv~l 486 (661)
+ +.+. +.+.+.++.|+.+|++.+..+|.+++.+|..|+...+ ++..|... ++|+.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 1112 2367899999999999999999999999999998764 56777755 999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccCCC----ccHHHHHHHHHHHhcCCh-hhHHHHHhCC
Q 006099 487 LSEGTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPG----GGMVDEALAILAILSSHP-EGKAAIGAAE 560 (661)
Q Consensus 487 L~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~~-~~~~~i~~~g 560 (661)
|++....++-.++..|.+|+.+..+...++. .|+++.|+.++.... ..++..|+.+|.||.... .++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999999888887775 699999999997733 467899999999998765 6888899999
Q ss_pred ChHHHHHHhhCCCH------HH---HHHHHHHHHHHhcC------CHHHHHHHHHcCCHHHHHHhhhcC--ChHHHHHHH
Q 006099 561 AVPVLVEVIGNGSP------RN---RENAAAVLVHLCAG------DQQYLAEAKELGVMGPLVDLAQNG--TDRGKRKAA 623 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~------~~---ke~A~~~L~~L~~~------~~~~~~~~~~~g~i~~L~~ll~~~--~~~~k~~A~ 623 (661)
+++.|..+|+.+.. .. ...++.++..++.. ++.+...+.+.|+++.|+.++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975431 11 12355666666654 335778889999999999998865 678899999
Q ss_pred HHHHHHHhhHHHHHHHHhhh
Q 006099 624 QLLERMSRFIEQQKQAQVQT 643 (661)
Q Consensus 624 ~lL~~L~~~~~~~~~~l~~~ 643 (661)
.++..+.+.++..+..++..
T Consensus 335 ~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHhhc
Confidence 99999998888877777754
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=120.40 Aligned_cols=76 Identities=29% Similarity=0.564 Sum_probs=68.1
Q ss_pred CCCCCCccCcCCcccccCCeecC-CCccccHHHHHHHHHh-CCCCCCCCCCCC-cCCCCccchhhhhhHHHHHHHcCCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEA-GHRTCPKTQQTL-TSTAVTPNYVLRSLIAQWCEANGIE 331 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~-~~~~cP~~~~~l-~~~~l~~n~~l~~~i~~~~~~~~~~ 331 (661)
..++++|.||||+++|.+||+++ |||+||+.||..|+.. +...||.|+.++ ....+.+|..++++++.|...+++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 36688999999999999999999 9999999999999975 447999999997 5678999999999999999987653
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.49 E-value=4e-12 Score=139.35 Aligned_cols=292 Identities=14% Similarity=0.081 Sum_probs=228.4
Q ss_pred hhhHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChh-----------------hHHH-HHHhCCHHHHHHhhCCCChH
Q 006099 352 ERTKIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNAD-----------------NRVA-IAEAGAIPLLVGLLSTPDSR 411 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~~-----------------~r~~-i~~~g~i~~Lv~lL~s~~~~ 411 (661)
...+++.|+..|+. .|.+....++..|.++...+.. +... +.+.+.|+.|+.+|++.+..
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~ 137 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence 45679999999986 4778888899999877543322 1122 33457899999999999999
Q ss_pred HHHHHHHHHHhccCCC--cchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhh
Q 006099 412 TQEHAVTALLNLSICE--DNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLL 487 (661)
Q Consensus 412 i~~~A~~~L~nLs~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL 487 (661)
++.+++.+|..|+... .+++.|. ..++++.|+.+|++....+|..++.+|.+|+..+....+++.- |+++.|++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998753 3688888 5699999999999999999999999999999998776666665 9999999999
Q ss_pred hcCC----HHHHHHHHHHHHHhhcccC-chHHHHHcCChHHHHhcccCCCcc------HHHH---HHHHHHHhcCC----
Q 006099 488 SEGT----QRGKKDAATALFNLCIYQG-NKGKAVRAGVVPTLMHLLTEPGGG------MVDE---ALAILAILSSH---- 549 (661)
Q Consensus 488 ~~~~----~~~~~~a~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~------~~~~---al~~L~~L~~~---- 549 (661)
..+. ..+..+++.+|.||..++. |+..+.+.|+++.|..+|..+... .... ++.++.-|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8753 3678899999999998754 777888999999999999753321 2223 66666666654
Q ss_pred ---hhhHHHHHhCCChHHHHHHhhCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CHHHHHHhhhc-C
Q 006099 550 ---PEGKAAIGAAEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQQYLAEAKELG---------VMGPLVDLAQN-G 614 (661)
Q Consensus 550 ---~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~ll~~-~ 614 (661)
+.++..+.+.|+++.|++++... ...++..|..++..+..+++.....+.+.. ++..|+.++.+ .
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 24567889999999999999864 577899999999999999998887776543 33334444543 3
Q ss_pred ChHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 006099 615 TDRGKRKAAQLLERMSRFIEQQKQAQVQT 643 (661)
Q Consensus 615 ~~~~k~~A~~lL~~L~~~~~~~~~~l~~~ 643 (661)
....|-.|..+++.....++..+..+..+
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ 406 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVST 406 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 68889999999998887777666666553
No 49
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.42 E-value=3.6e-14 Score=108.09 Aligned_cols=56 Identities=20% Similarity=0.359 Sum_probs=50.5
Q ss_pred CccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhh
Q 006099 261 DFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 317 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l 317 (661)
.|.||||+++|.|||++ +|||+|||.||++|+.++ .+||+|++++...+++||+.-
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECccC
Confidence 58999999999999999 999999999999999854 579999999999999988653
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.2e-13 Score=129.12 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=64.1
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHh-CCCCCCC--CCCCCcCCCCccchhhhhhHHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEA-GHRTCPK--TQQTLTSTAVTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~-~~~~cP~--~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (661)
....+|.||||+++|.|||+. .|||+|||.||.+||.. +..+||. |++.+....+.||..++.+++.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 456789999999999999985 99999999999999985 3468999 99999999999999999999999764
No 51
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=121.33 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=63.6
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC-CCCccchhhhhhHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS-TAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~~n~~l~~~i~~~~~ 326 (661)
.+++++.||||+++|.+||+++|||+||+.||..|+..+..+||.|+.++.. ..+.+|..++++++.|..
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 3456799999999999999999999999999999999667799999999987 789999999999998864
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=124.22 Aligned_cols=70 Identities=21% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC-CCccchhhhhhHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST-AVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-~l~~n~~l~~~i~~~~~ 326 (661)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..++++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999997777999999999977 89999999999998863
No 53
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.36 E-value=2.9e-13 Score=153.53 Aligned_cols=74 Identities=32% Similarity=0.437 Sum_probs=69.3
Q ss_pred CCCCCCccCcCCcccccCCeecCCC-ccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHcCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEANGI 330 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 330 (661)
.++|++|.|||++++|.|||++++| +||+|.+|++|+.. +.+||.|+++++...++||..+|+.|++||..++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999997 79999999999985 67999999999999999999999999999998764
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.3e-12 Score=107.61 Aligned_cols=67 Identities=28% Similarity=0.626 Sum_probs=60.0
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHh-----CCCCCCCCCCCCcCCCCccchhhhhhH
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-----GHRTCPKTQQTLTSTAVTPNYVLRSLI 321 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~~n~~l~~~i 321 (661)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+..+....+.+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 4456788999999999999999999999999999999986 367999999999988999998887764
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.32 E-value=3.8e-11 Score=122.07 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=179.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
...++.|+..|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 4568999999999999999999999998752 2468999999999999999999999999864322111
Q ss_pred hhhCCChHHHH-HHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 433 IVSSGAVPSIV-HVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 433 i~~~g~i~~Lv-~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
..++.+. .++.+.++.++..++++|..+...+.. ....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 1223333 234667899999999999998643211 123568899999999999999999999998754
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
.++++.|+.++.+++..++..|+.+|..+.... ..+++.|+.++.+.++.+|..|+.+|..+..
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-- 221 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-- 221 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--
Confidence 358999999999999999999999999885322 1357889999999999999999999999862
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 592 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
..+++.|..++.+++ ++..|..+|..+..
T Consensus 222 ---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp ---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred ---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 357888888887754 77888888888764
No 56
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=106.98 Aligned_cols=67 Identities=21% Similarity=0.590 Sum_probs=60.0
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHh-----CCCCCCCCCCCCcCCCCccchhhhhhH
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA-----GHRTCPKTQQTLTSTAVTPNYVLRSLI 321 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~~n~~l~~~i 321 (661)
...+.+++.||||++.+.+|++++|||+||+.||..|+.. +...||.|+..+....+.+|..+++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 3466788999999999999999999999999999999985 368999999999998899998887764
No 57
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=111.06 Aligned_cols=71 Identities=28% Similarity=0.472 Sum_probs=64.6
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHHc
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEAN 328 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (661)
.+++++.||||++.|.+|+++ +|||+||+.||.+|+. ...+||.|+..+....+.+|..++++++.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 345679999999999999998 8999999999999998 5679999999999888999999999999998754
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-13 Score=109.37 Aligned_cols=65 Identities=23% Similarity=0.537 Sum_probs=58.5
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhC------CCCCCCCCCCCcCCCCccchhhhhhH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG------HRTCPKTQQTLTSTAVTPNYVLRSLI 321 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~------~~~cP~~~~~l~~~~l~~n~~l~~~i 321 (661)
.+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+..+....+.+|..+++++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 567889999999999999999999999999999999852 67899999999988899998887764
No 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=110.17 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=63.6
Q ss_pred CCCCCccCcCCcccccCCee-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (661)
.+.+++.||||+++|.+||+ ++|||+||+.||.+|+.....+||.||.++....+.+|..+..+++....-
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 45678999999999999999 999999999999999997668999999999999999999988888776554
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.28 E-value=8.9e-11 Score=113.95 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=160.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
+...++.|+..|.++++.++..|+..|..+.. .+.++.|+.+|.+++..++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35789999999999999999999999987642 357899999999999999999999998875
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
..++++.|+.+|.+.++.++..|+.+|..+.. .++++.|+.++.+.++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 24678999999999999999999999998742 3578999999999999999999999999843
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
...++.|..++.++++.++..|+.+|..+.. ..+++.|..+++++++.+|..|..+|..+....
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578899999998999999999999998853 236788999999999999999999999988765
Q ss_pred H
Q 006099 592 Q 592 (661)
Q Consensus 592 ~ 592 (661)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.28 E-value=1e-10 Score=113.52 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=160.6
Q ss_pred hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhh
Q 006099 395 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 474 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 474 (661)
.+.++.|+.+|++++..++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4579999999999999999999999987642 467899999999999999999999998874
Q ss_pred hhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHH
Q 006099 475 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 554 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 554 (661)
..++++.|+.+|.+.++.++..|+.+|..+.. .+.++.|+.+|.+++..++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24678999999999999999999999998853 3578999999999999999999999998853
Q ss_pred HHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHH
Q 006099 555 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIE 634 (661)
Q Consensus 555 ~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~ 634 (661)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999999853 2367889999999999999999999999886654
Q ss_pred H
Q 006099 635 Q 635 (661)
Q Consensus 635 ~ 635 (661)
.
T Consensus 207 ~ 207 (211)
T 3ltm_A 207 H 207 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=98.41 Aligned_cols=55 Identities=16% Similarity=0.451 Sum_probs=49.3
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+.++....
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567889999999999999999999999999999999767789999999887554
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=1.5e-10 Score=111.49 Aligned_cols=186 Identities=21% Similarity=0.206 Sum_probs=161.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..+..+.+++.|.++++.++..|+..|..+.. .+.++.|+.+|.+++..++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35788999999999999999999999987642 257899999999999999999999998774
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
..++++.|+..|.+.++.++..|+++|..+.. ..+++.|+.++.+.++.++..|+.+|.++..
T Consensus 74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 23578999999999999999999999998742 3578999999999999999999999998853
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
.+.++.|..++.+++..++..|+.+|..+.. ..+++.|..++.+.++.+|..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999998842 236788899999999999999999998764
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=114.72 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=61.4
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC-------CCCccchhhhhhHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS-------TAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~-------~~l~~n~~l~~~i~~~~~ 326 (661)
...++|.||||++++.+||+++|||+||+.||.+|+..+..+||.|+..+.. ..+.+|..+..++..|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999998778899999999864 567788888888888753
No 65
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=8.6e-12 Score=99.58 Aligned_cols=53 Identities=32% Similarity=0.640 Sum_probs=46.9
Q ss_pred CCCCCCCccCcCCcccccCCeecC-CCccccHHHHHHHHHhC-CCCCCCCCCCCc
Q 006099 255 APVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIEKWLEAG-HRTCPKTQQTLT 307 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~-cg~t~~r~~I~~w~~~~-~~~cP~~~~~l~ 307 (661)
...+++++.||||+++|.+||+++ |||+||+.||.+|+... ..+||.|+.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 346688999999999999999999 99999999999999853 379999999754
No 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=2.7e-12 Score=110.78 Aligned_cols=68 Identities=15% Similarity=0.392 Sum_probs=59.9
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCC----CCccchhhhhhHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTST----AVTPNYVLRSLIAQWC 325 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~~n~~l~~~i~~~~ 325 (661)
.+++++.||||+++|.+||++ +|||+||+.||.+|+. ...+||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456789999999999999997 9999999999999998 458999999998865 6788888888887764
No 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=4.6e-12 Score=111.15 Aligned_cols=70 Identities=21% Similarity=0.517 Sum_probs=62.6
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHH
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQW 324 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~ 324 (661)
...++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.+..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999997767999999999988888988888877654
No 68
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.21 E-value=3.5e-10 Score=108.78 Aligned_cols=185 Identities=21% Similarity=0.212 Sum_probs=159.7
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG 475 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~ 475 (661)
+..+.++.+|++++..++..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 467899999999999999999999987652 367899999999999999999999998874
Q ss_pred hcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHH
Q 006099 476 ASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAA 555 (661)
Q Consensus 476 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~ 555 (661)
..++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.+|.++++.++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 23678999999999999999999999998753 3578899999999999999999999998853
Q ss_pred HHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 556 IGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 556 i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+.++.|..++.+.++.+|..|+.+|..+.. + .+++.|..++.++++.++..|..+|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999842 2 367888899999999999999999987753
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=97.87 Aligned_cols=57 Identities=25% Similarity=0.594 Sum_probs=49.5
Q ss_pred CCCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHH--hCCCCCCCCCCCCcCCC
Q 006099 254 KAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE--AGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 254 ~~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~ 310 (661)
....+++++.||||++.+.+|++++|||+||+.||.+|+. .+...||.|+.++....
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3446778899999999999999999999999999999997 35678999999887544
No 70
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.2e-12 Score=102.89 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=50.5
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhh
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVL 317 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l 317 (661)
...+++.||||++.+.+|++++|||+||+.||.+|+. ...+||.|+.++. ..+.+|..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC-SCCEECHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc-ccCCcHHHH
Confidence 4456799999999999999999999999999999998 4678999999986 556666443
No 71
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=97.06 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=50.9
Q ss_pred CCCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 256 PVIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
..+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+..+....+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3567889999999999999997 99999999999999984 6799999999987766554
No 72
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=5.5e-12 Score=117.72 Aligned_cols=70 Identities=21% Similarity=0.540 Sum_probs=62.3
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCc-CCCCccchhhhhhHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLT-STAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~~n~~l~~~i~~~~~ 326 (661)
.+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.+|..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999987 999999999999999977889999999985 4668999999999998854
No 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=5.6e-12 Score=110.45 Aligned_cols=68 Identities=16% Similarity=0.350 Sum_probs=62.3
Q ss_pred CCCCCccCcCCcccccCCeec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHHHH
Q 006099 257 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWCEA 327 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (661)
.+.+++.||||+++|.+||++ +|||+||+.||..|+. ..||.|+.++....+.+|..+.+++..|...
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 346789999999999999999 9999999999999986 7899999999888999999999999988764
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4e-11 Score=92.46 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=43.0
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHh--CCCCCCCC
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKT 302 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~--~~~~cP~~ 302 (661)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467788999999999999999999999999999999985 55789987
No 75
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.5e-11 Score=106.86 Aligned_cols=68 Identities=24% Similarity=0.504 Sum_probs=60.1
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhC--CCCCCCCCCCCcCCCCccchhhhhhHHHHHH
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAG--HRTCPKTQQTLTSTAVTPNYVLRSLIAQWCE 326 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~~ 326 (661)
.+.+.||||++.+.+|++++|||+||+.||.+|+... ..+||.|+.++....+.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999843 3689999999999899999888888777654
No 76
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=9e-12 Score=112.50 Aligned_cols=63 Identities=21% Similarity=0.531 Sum_probs=50.9
Q ss_pred CCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHHHH
Q 006099 260 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQWC 325 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~~~ 325 (661)
+++.||||++.|.+||+++|||+||+.||.+|+. .+.+||.||.++.... ++..+...+..+.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSKT--YSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCEE--ECHHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCCC--CccchhHHHHHHH
Confidence 5688999999999999999999999999999998 5678999999886432 3444444554443
No 77
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=1.1e-09 Score=111.12 Aligned_cols=202 Identities=12% Similarity=0.062 Sum_probs=160.5
Q ss_pred HHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh
Q 006099 392 IAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 392 i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
+...+.++.|+..|.++++.++..|+.+|.++. ..++++.|+.+|.+.++.++..|+++|..+...+...
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999886 2357889999999999999999999999986433211
Q ss_pred hhhhhcCCcHHHHH-hhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCCh
Q 006099 472 VTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHP 550 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 550 (661)
. ..++.|.+ ++.+.++.++..++.+|.++....... ...+++.|+.+|.++++.++..|+.+|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 1 12233332 346778999999999999997533211 12467889999999999999999999987753
Q ss_pred hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 551 EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 551 ~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.++++.|+.++.+.++.+|..|+++|..+...++ .+++.|..++.++++.++..|..+|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999865443 35688899999999999999999999886
Q ss_pred h
Q 006099 631 R 631 (661)
Q Consensus 631 ~ 631 (661)
.
T Consensus 221 ~ 221 (280)
T 1oyz_A 221 D 221 (280)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.15 E-value=2.4e-10 Score=134.89 Aligned_cols=280 Identities=13% Similarity=0.096 Sum_probs=193.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH----HhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA----EAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
+.++.|++.+.++++..+..|+..|..++...+.....-. -.+.+|.|+.++++.+..+|..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 5789999999999999999999999999865433211000 124678888999999999999999999988754322
Q ss_pred hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006099 430 KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
...-.-.+.++.+...+.+++++++..++.+|..|+........-.-.+.++.++..+.+.++.++..|+..+..++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11111235678888888888999999999999999865432111111256777888888878888888887777776321
Q ss_pred CchH-------------------------------------------------------HHH---Hc----CChHHHHhc
Q 006099 510 GNKG-------------------------------------------------------KAV---RA----GVVPTLMHL 527 (661)
Q Consensus 510 ~~~~-------------------------------------------------------~iv---~~----g~v~~Lv~l 527 (661)
..+. .+. .. .+++.+..+
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL 367 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1100 000 01 133444455
Q ss_pred ccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 006099 528 LTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPL 607 (661)
Q Consensus 528 L~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 607 (661)
+.+++..+++.|+.+|++++........-.-.++++.++..+.+.++.+|..|+++|.+++...+.......-.++++.|
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 55667788888888888888765432111123578889999999999999999999999986432211111122467888
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 608 VDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 608 ~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
+..+.+.+++++..|.++|.++.+..
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 88888889999999999999998543
No 79
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=4.1e-11 Score=93.04 Aligned_cols=55 Identities=24% Similarity=0.507 Sum_probs=48.8
Q ss_pred CCccCcCCcc-cccCC----eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 260 DDFRCPISLE-LMKDP----VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 260 ~~f~CpIc~~-~m~dP----v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5688999999 99999 5689999999999999998777899999999987777654
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=2.3e-11 Score=106.42 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCc-cchhhhhhH
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVT-PNYVLRSLI 321 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~-~n~~l~~~i 321 (661)
.+++++.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+. ++..+.+++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i 84 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHH
Confidence 45678999999999999999999999999999999997678999999999876654 344444444
No 81
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.8e-10 Score=95.25 Aligned_cols=54 Identities=28% Similarity=0.584 Sum_probs=47.7
Q ss_pred CCCCCCccCcCCcccccC----CeecCCCccccHHHHHHHHHhC--CCCCCCCCCCCcCC
Q 006099 256 PVIPDDFRCPISLELMKD----PVIVSTGQTYERSCIEKWLEAG--HRTCPKTQQTLTST 309 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~d----Pv~~~cg~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~ 309 (661)
..+.+++.||||++.+.+ |++++|||+||+.||.+|+... ..+||.|+..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356778999999999999 9999999999999999999854 57999999987654
No 82
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.06 E-value=5.3e-11 Score=111.62 Aligned_cols=69 Identities=22% Similarity=0.528 Sum_probs=61.6
Q ss_pred CCCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccchhhhhhHHH
Q 006099 255 APVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNYVLRSLIAQ 323 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~~l~~~i~~ 323 (661)
...++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+...+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 346788999999999999999999999999999999998766799999999998888888887777654
No 83
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=5.9e-11 Score=93.92 Aligned_cols=57 Identities=21% Similarity=0.514 Sum_probs=50.1
Q ss_pred CCCCccCcCCcccccCC-------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccch
Q 006099 258 IPDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNY 315 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dP-------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~ 315 (661)
..+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++....+.+++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 45678999999999998 88999999999999999984 47999999999887777654
No 84
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.05 E-value=2.3e-11 Score=109.81 Aligned_cols=67 Identities=15% Similarity=0.386 Sum_probs=54.6
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC---------CCCccchhhhhhHH
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS---------TAVTPNYVLRSLIA 322 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~---------~~l~~n~~l~~~i~ 322 (661)
..++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++.. ..+.++..++..|.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 46788999999999999999999999999999999998777799999987532 23445555555543
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.8e-10 Score=86.04 Aligned_cols=47 Identities=30% Similarity=0.771 Sum_probs=41.8
Q ss_pred CCCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHh--CCCCCCCC
Q 006099 256 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEA--GHRTCPKT 302 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~--~~~~cP~~ 302 (661)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 355678999999999999999999999999999999764 66789987
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=91.06 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
..+++.||||++.+.+|++++|||+||+.||.+|+. ...+||.|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCHh
Confidence 356789999999999999999999999999999998 457999999987643
No 87
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=88.64 Aligned_cols=52 Identities=19% Similarity=0.467 Sum_probs=45.8
Q ss_pred CCCCCCccCcCCcccccCC-------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 256 PVIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 256 ~~~p~~f~CpIc~~~m~dP-------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
...++++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3456789999999999988 88999999999999999985 6799999998753
No 88
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.95 E-value=3.9e-09 Score=114.62 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=189.9
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCCCc
Q 006099 354 TKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSICED 428 (661)
Q Consensus 354 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~~~ 428 (661)
+.++.|++.+.++ ++..+..|+..|..++... +..-... -...++.++.+|++. +..+|..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 8999999999999998643 2110011 123678889999887 78999999999998753211
Q ss_pred -c-hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch--hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHH
Q 006099 429 -N-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN--KVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504 (661)
Q Consensus 429 -~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 504 (661)
+ .......-.++.+...+.+.+.+++..++.+|..+...... ...+ ..+.++.++..+++.++.++..|+..+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1 00111111355566666677899999999999998765321 1111 11667777888888889999999999888
Q ss_pred hhcccC------------------chHHHHH---cCChHHHHhcccC-------CCccHHHHHHHHHHHhcCChhhHHHH
Q 006099 505 LCIYQG------------------NKGKAVR---AGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAI 556 (661)
Q Consensus 505 L~~~~~------------------~~~~iv~---~g~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i 556 (661)
++.... ....+++ ..+++.++..|.. .+..++..|..+|..++..-.. .+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH
Confidence 876431 0001111 3456677777743 2346788888888888754321 22
Q ss_pred HhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 557 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 557 ~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
. ..+++.+...+.+.++..|+.|+.+|..++.+.. ..... .-..+++.|+..+.+.++.+|..|.++|..+....
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2356777788888899999999999999997542 11111 11468999999999999999999999999998754
No 89
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.94 E-value=2e-10 Score=88.71 Aligned_cols=54 Identities=20% Similarity=0.487 Sum_probs=47.5
Q ss_pred CCccCcCCcccccCC-------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 260 DDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 260 ~~f~CpIc~~~m~dP-------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999988 78899999999999999985 6799999999987776554
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.93 E-value=2.2e-09 Score=126.65 Aligned_cols=273 Identities=14% Similarity=0.074 Sum_probs=191.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..++.++..+.+++++++..|+..|..++...+..-.... .++++.++.++++.+..++..|+..+..++.....+..+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 5677888888889999999999999999876554321111 247888899999999999999999999998765444322
Q ss_pred h--hCCChHHHHHHH-----------cc-----------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc
Q 006099 434 V--SSGAVPSIVHVL-----------RI-----------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE 489 (661)
Q Consensus 434 ~--~~g~i~~Lv~lL-----------~~-----------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 489 (661)
. -...++.++..+ .+ .+..++..|+.+|..|+.... ..+ -...++.+.+.+.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~-~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DEL-LPHILPLLKELLFH 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGG-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHH-HHHHHHHHHHHhcC
Confidence 1 123445555554 22 112357888889888875432 111 12467888888888
Q ss_pred CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHH
Q 006099 490 GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEV 568 (661)
Q Consensus 490 ~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~l 568 (661)
.+...+..|+.+|.+++........-.-.++++.++.++.++++.++..|+.+|.+++..-... ....-.++++.|+..
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8999999999999999876543222223567899999999999999999999999988632110 000112467888888
Q ss_pred hhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 569 IGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 569 L~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
|.+.++.+|..|+++|.+++...+..... .-.++++.|+.++.....+....+..++..+..
T Consensus 451 L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 451 ILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 88889999999999999998643321111 113567788888877776666666677776653
No 91
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=9.6e-10 Score=88.05 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=46.4
Q ss_pred CCCCCccCcCCcccc--cCCeecC--CCccccHHHHHHHHHhCCCCCCCCCCCCcCCCC
Q 006099 257 VIPDDFRCPISLELM--KDPVIVS--TGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAV 311 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m--~dPv~~~--cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l 311 (661)
.+.+++.||||++.+ .||++.+ |||+||+.|+.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999999988 4666666 999999999999997778899999998876543
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.92 E-value=1.5e-08 Score=113.66 Aligned_cols=227 Identities=15% Similarity=0.177 Sum_probs=161.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..++.+...+.+.++.++..|+..|..++...... ......+|.|..++++++..++..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 45666777778889999999999999998643321 223567899999999999999999999999887542211 1
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch-
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK- 512 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~- 512 (661)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++++.++.++..|+.+|..++..-...
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2345778888888888999999999999998753211 1123467899999999999999999999999988754322
Q ss_pred -HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 513 -GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 513 -~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
.......+++.+..++.+++..++..++.+|..++..-... . .....+|.+..++++.++.+|..|+.+|..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD-N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH-H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh-H-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 11233467778888888888888888887777665421111 1 112356677777776667777776666665543
No 93
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=1.3e-09 Score=87.83 Aligned_cols=57 Identities=26% Similarity=0.557 Sum_probs=47.7
Q ss_pred CCCCCccCcCCcccccCC---eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 257 VIPDDFRCPISLELMKDP---VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dP---v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
...+++.||||++.|.+| ++++|||+||+.||.+|+. .+.+||.||..+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCCC
Confidence 345678999999999876 4469999999999999997 55799999999987666554
No 94
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.90 E-value=1.7e-08 Score=113.25 Aligned_cols=268 Identities=13% Similarity=0.119 Sum_probs=199.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhh-HHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADN-RVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
..++.++..+.+.+++++..|+..|..++..-... +....-...+|.+..++++.+..++..++.+|..++..-.. .
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence 46788888899999999999999999988643221 21123346789999999999999999999999988743111 1
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
......++.+..++++.++++|..++.+|..+...-... ......+|.|..++.+.+..++..++.+|..++..-+..
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 122347788899998888999999998887776432111 112356788888888888999999999999887542221
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
.....+++.++.+|.+++..++..|+.+|..++..-... ......+|.|..++.+.+..+|..++.++..++..-+
T Consensus 437 --~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 437 --FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp --GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC
Confidence 112246788888998888899999999999887643221 1223578888888888889999999999999876422
Q ss_pred HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 593 QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 593 ~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
. ......+++.|..++.+.++.+|..+.++|..+...
T Consensus 513 ~---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 513 Q---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp H---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred H---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 1 123346889999999999999999999999999864
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.82 E-value=1.4e-07 Score=106.21 Aligned_cols=265 Identities=17% Similarity=0.119 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch-h
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK-G 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k-~ 431 (661)
...++.+.+.+.+.++.++..|+.++..+...+++. +.+.++++.|..+|.++|+.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 355677889999999999999999999998766553 333578999999999999999999999999998764321 1
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc---
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIY--- 508 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--- 508 (661)
.-...+.+..|+..+...++-.+...+.+|..+...++.. ....++.+..++++.++.++..|++++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1112345677777777778878888888888776443211 124567777788888888889999999888642
Q ss_pred cCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC-hh------------------hHHHH-------HhCC--
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH-PE------------------GKAAI-------GAAE-- 560 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~~------------------~~~~i-------~~~g-- 560 (661)
++.....+-..+.+.|+.++. ++++++..|+..|..++.. ++ .|... ....
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 222222222345566665543 5667777777777766531 10 11111 1112
Q ss_pred --ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 561 --AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 561 --~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.++.|.+++.+.++..|..+++.+..++...+.... ..++.|+.++....+.++..+...++.+.
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 345566677777889999999999999987653322 24566777776666666666666665554
No 96
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.78 E-value=3.5e-09 Score=82.77 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=42.2
Q ss_pred CCccCcCCcccccCC-eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 260 DDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 260 ~~f~CpIc~~~m~dP-v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++..||||++.+.+| +.++|||+||+.||.+|+. .+.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 456899999999998 6789999999999999998 45799999998763
No 97
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=2.3e-08 Score=112.74 Aligned_cols=260 Identities=15% Similarity=0.097 Sum_probs=189.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
.....+++.+.+.+...++-+.-.+..+++.+++.. .-++..+.+-|+++|+.++..|+.+|+++... +
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~----- 117 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K----- 117 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H-----
Confidence 346678888889999999888888888887555432 23578888899999999999999999998622 1
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch-
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK- 512 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~- 512 (661)
+....++.+..+|.+.++.+|..|+.++..+....+. .+-..++++.|.++|.+.++.++..|+.+|..++......
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 1223467789999988999999999999999764332 2233578899999999999999999999999998875432
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC--
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-- 590 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~-- 590 (661)
..-...+.+..|+..+.+.++..+...+.+|..++..++.. ....++.+..++++.++.++..|++++..+...
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 10111234667777777778888888888888887543211 123567777788888899999999999998742
Q ss_pred -CHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 591 -DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 591 -~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
+++....+ -..+.+.|+.++. .++.+|..|...|..+...
T Consensus 272 ~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 272 KDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp BTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 23222222 2235667776554 6778888888888777653
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.77 E-value=4.7e-09 Score=78.20 Aligned_cols=47 Identities=28% Similarity=0.586 Sum_probs=41.4
Q ss_pred CCccCcCCcccccC----CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLELMKD----PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~~m~d----Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
+++.||||++.+.+ |++++|||+||+.||.+|+... .+||.|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45789999999976 7788999999999999999955 89999998764
No 99
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.75 E-value=5.3e-09 Score=77.95 Aligned_cols=48 Identities=27% Similarity=0.729 Sum_probs=41.9
Q ss_pred CCCccCcCCcccccC---CeecC-CCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKD---PVIVS-TGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~d---Pv~~~-cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.++..||||++.+.+ ++.++ |||.||+.||.+|+. .+.+||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 456789999999987 78886 999999999999998 5679999998763
No 100
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=81.64 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=43.6
Q ss_pred CCCCCccCcCCcccccCCeec---CCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 257 VIPDDFRCPISLELMKDPVIV---STGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~---~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+..++..||||++.+.+|..+ +|||+||+.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 456678999999999887654 99999999999999985 4589999998764
No 101
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.5e-09 Score=84.14 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=46.0
Q ss_pred CCCCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 257 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 257 ~~p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
.+.+++.||||++.+.+ ++++|||+||+.||.+|+. ...+||.|+.++....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 9999999999999999998 6789999999887443
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=1.7e-08 Score=115.58 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=147.1
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHH-HHccCCHHHHHHHHHHHHHcccCC--chhhh
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVH-VLRIGSMEARENAAATLFSLSVID--ENKVT 473 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~e~~~~a~~~L~~Ls~~~--~~~~~ 473 (661)
.|.++++.|+++++..|..|+.+|.||+.++.++..+...|++..++. +|.+.+.+++..|+++|.||+... +....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 455677889999999999999999999998888888999999887654 677789999999999999999764 56778
Q ss_pred hhhcCCcHHHHHhhhcCC---------------------HHHHHHHHHHHHHhhcccCch-HHHHHcCChHHHHhcccC-
Q 006099 474 IGASGAIPPLVTLLSEGT---------------------QRGKKDAATALFNLCIYQGNK-GKAVRAGVVPTLMHLLTE- 530 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~- 530 (661)
+.+.|++++|..+++... ..+..+++.+|++|+...+.. ..+...|+++.|+.+|.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 889999999999986421 123346788999998765543 456678999999999854
Q ss_pred --CCccHHHHHHHHHHHhcCCh-hhHHHHHhCCCh---HHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 531 --PGGGMVDEALAILAILSSHP-EGKAAIGAAEAV---PVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 531 --~~~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i---~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
...++...|+.+|.+|+... +....+.+.+.. ..++.+.+ .+...+..++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 23578999999999999865 445666666543 23333333 33445778889999985
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=3.9e-09 Score=78.95 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=40.8
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 5689999998763
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=79.51 Aligned_cols=49 Identities=18% Similarity=0.608 Sum_probs=41.6
Q ss_pred CCCccCcCCccccc---CCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~---dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.++..||||++.+. .+++++|||+||+.||.+|+.. +.+||.|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 45678999999884 4567899999999999999985 5679999998764
No 105
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.71 E-value=8.8e-09 Score=85.52 Aligned_cols=50 Identities=18% Similarity=0.525 Sum_probs=43.6
Q ss_pred CCCCccCcCCcccccC---CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
..++..||||++.+.+ +++++|||.||..||.+|+. .+.+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 3567899999999987 77889999999999999998 56799999998764
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=3.9e-09 Score=94.42 Aligned_cols=55 Identities=20% Similarity=0.505 Sum_probs=48.0
Q ss_pred CCCccCcCCcccccCC-------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccc
Q 006099 259 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPN 314 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP-------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n 314 (661)
++++.||||++.+.+| ++++|||+||+.||.+|+. ...+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcccccccc
Confidence 4679999999999999 8999999999999999998 55699999999886665443
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.69 E-value=4.6e-08 Score=111.99 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=151.8
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHH-HhhhcCCHHHHHHHHHHHHHhhccc--CchH
Q 006099 437 GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLV-TLLSEGTQRGKKDAATALFNLCIYQ--GNKG 513 (661)
Q Consensus 437 g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~ 513 (661)
+.+.++++.|++.+++.|..|+++|.+|+.+...+..+...|+|..++ .+|.+.+..++..|+++|.||+... +.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 356678888999999999999999999998778888888888888765 5678889999999999999999875 4566
Q ss_pred HHHHcCChHHHHhcccCCC---------------------ccHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHhhC
Q 006099 514 KAVRAGVVPTLMHLLTEPG---------------------GGMVDEALAILAILSSHP-EGKAAIGAAEAVPVLVEVIGN 571 (661)
Q Consensus 514 ~iv~~g~v~~Lv~lL~~~~---------------------~~~~~~al~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~ 571 (661)
.+++.|++++|..+|.... ..+.+.++.+|++||... +....+...+.++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 7899999999999885310 124556888999998654 555678888899999998853
Q ss_pred ---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 572 ---GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM---GPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 572 ---~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i---~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
....++..|+.+|..++..++.....+.+.|.. ..+..+ ..++...+..++++|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 246789999999999999999888888887653 333333 3444445677888888875
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-08 Score=80.86 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=43.3
Q ss_pred CCCCccCcCCcccccCC---eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMKDP---VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dP---v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
..++..||||++.+.++ +.++|||.||+.||.+|+.. +.+||.|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34667899999999888 67899999999999999984 5789999998764
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.62 E-value=2.7e-08 Score=86.44 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=41.8
Q ss_pred CCccCcCCcccccCCe------------------ecCCCccccHHHHHHHHH----hCCCCCCCCCCCCcC
Q 006099 260 DDFRCPISLELMKDPV------------------IVSTGQTYERSCIEKWLE----AGHRTCPKTQQTLTS 308 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv------------------~~~cg~t~~r~~I~~w~~----~~~~~cP~~~~~l~~ 308 (661)
.+..||||++.|.+|+ +++|||.||+.||.+|+. ....+||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3568999999998875 689999999999999996 346799999988763
No 110
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.60 E-value=8.9e-07 Score=104.18 Aligned_cols=273 Identities=16% Similarity=0.127 Sum_probs=188.0
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHH--HhCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCC-
Q 006099 354 TKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIA--EAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSIC- 426 (661)
Q Consensus 354 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~- 426 (661)
..++.++..+.++ ++..+..++..|..++..... ..+. -...++.+...+.++ +..++..|+.+|.++...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 899999999999999864211 1111 124577788888876 688999999999987643
Q ss_pred Ccc-hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh-hhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHH
Q 006099 427 EDN-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504 (661)
Q Consensus 427 ~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 504 (661)
..+ .........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 111111225666677777778899999999999887643211 111223667888888878888999999988888
Q ss_pred hhcccC---------------------chHHHHHcCChHHHHhcccC-------CCccHHHHHHHHHHHhcCChhhHHHH
Q 006099 505 LCIYQG---------------------NKGKAVRAGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAI 556 (661)
Q Consensus 505 L~~~~~---------------------~~~~iv~~g~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i 556 (661)
++.... ....-.-..+++.++..+.. .+..++..|..+|..++..-.. .+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh
Confidence 875421 00000113456677777742 3456788888888877654321 11
Q ss_pred HhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 557 GAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 557 ~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
+. .+++.+...+.+.++.+|+.|+.+|..++.+.+ ...... -..+++.|+..+.+.++.++..|.++|..+...
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 11 356666777778889999999999999987653 322222 234789999999999999999999999999865
No 111
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.57 E-value=2.5e-06 Score=81.02 Aligned_cols=215 Identities=16% Similarity=0.138 Sum_probs=163.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc-chh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED-NKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~-~k~ 431 (661)
.+.+..|++.|...|+..+..|+..|..+.+.-+..-....-...+|.++.++++.|..+-..|+.+|..|-.+.+ ...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4678899999999999999999999999998754444444445679999999999999999999999999876532 222
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
.+. ..+..+..++++++.-.+..|+..+..|......+ +.+..|.+++.+.+.+++..++++|.+++...++
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 221 23566888888899999999999999995443333 4568889999889999999999999999987765
Q ss_pred hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh--------hCCCHHHHHHHHHH
Q 006099 512 KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI--------GNGSPRNRENAAAV 583 (661)
Q Consensus 512 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL--------~~~~~~~ke~A~~~ 583 (661)
... -.+++..+-.+|.+.|+.+++.|+.+|..+...|-. .+.++.+..++ ..|.|..+..|-.+
T Consensus 184 ~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 184 SGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp CCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 431 135666677888899999999999999999887632 23333333332 24677777776544
No 112
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.55 E-value=5.8e-07 Score=105.79 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhH-HHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc-
Q 006099 353 RTKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNR-VAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICED- 428 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~- 428 (661)
...++.+++.+.+. ++.++..|+.+|..+...-..+- ........++.+...+.+.+.+++..++.+|..++....
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 35667788888776 68899999999998864322111 001111257788888888899999999999999875322
Q ss_pred chhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-------------------hhhhhh--hcCCcHHHHHhh
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-------------------NKVTIG--ASGAIPPLVTLL 487 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-------------------~~~~i~--~~g~i~~Lv~lL 487 (661)
.-...+....++.++..+.+.++.++..++..+..++.... ....+. -...++.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 11111233678888888877788999999988888764310 000000 024466677777
Q ss_pred hc-------CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh--hHHHHHh
Q 006099 488 SE-------GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE--GKAAIGA 558 (661)
Q Consensus 488 ~~-------~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~~~~i~~ 558 (661)
.. .+...+..|+.+|..++...+. .++ ..+++.+...+.+++..++..|+.+|..++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 2346788888888888765432 112 2456666777777888999999999999987643 222222
Q ss_pred CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 559 AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYL-AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 559 ~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
...++.++..+.+.++.+|..|+++|.+++...+... ..-.-..+++.|+..+.+. ++++..|.++|..+....
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 2478899999999999999999999999987543210 0000123577788888774 889999999999988653
No 113
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.55 E-value=2.7e-06 Score=96.19 Aligned_cols=256 Identities=17% Similarity=0.116 Sum_probs=175.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
.....++.+.+.+.+.++-+.-.+..++..+++.... ++..|.+-|+++++.++..|+.+|+++... .+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EM- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HH-
Confidence 4556777888888888888777888887655542222 467888889999999999999999999732 12
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHH
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 514 (661)
....++.+...|.+.++.+|..|+.++.++....+. +. .++++.+..+|.+.++.++..|+.+|..++........
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 235678888999999999999999999999764331 11 26788888999999999999999999999865432211
Q ss_pred HHHcCChHHHHhcccC---------------CCccHHHHHHHHHHHhcCChhh-HH------------------------
Q 006099 515 AVRAGVVPTLMHLLTE---------------PGGGMVDEALAILAILSSHPEG-KA------------------------ 554 (661)
Q Consensus 515 iv~~g~v~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~~~~-~~------------------------ 554 (661)
.. ...++.++.+|.+ .++..+...+.+|..++..+.. ..
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 11 2567777766542 3566666677777766654211 00
Q ss_pred -----HHHh--------CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHH
Q 006099 555 -----AIGA--------AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRK 621 (661)
Q Consensus 555 -----~i~~--------~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 621 (661)
.+.. ..++..|..++.+.++.+|..|+.+|..++...|... ......++..+.+.+..+|..
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHH
Confidence 0000 0245566777777777888888888888776544321 123445666666667777777
Q ss_pred HHHHHHHHHh
Q 006099 622 AAQLLERMSR 631 (661)
Q Consensus 622 A~~lL~~L~~ 631 (661)
|..+|..+..
T Consensus 370 alelL~~l~~ 379 (618)
T 1w63_A 370 AMELSFALVN 379 (618)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 7777766654
No 114
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.54 E-value=2.1e-07 Score=109.43 Aligned_cols=274 Identities=12% Similarity=0.085 Sum_probs=180.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcch--
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNK-- 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k-- 430 (661)
..++.+.+.+.+.+|..+..|+..|..++.... ..-.... ...+|.|+..++++++.++..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 455666667778899999999999999986432 2111111 247899999999999999999999999987531110
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhhhhhh--cCCcHHHHHhhhcCC--HHHHHHHHHHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGA--SGAIPPLVTLLSEGT--QRGKKDAATALFN 504 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~aL~n 504 (661)
..-.-...++.++..|++. +.++..|+++|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+|..
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 0001234567777788665 8899999999998875311 0111111 245778888887543 6788899999999
Q ss_pred hhcccCchHHHHHcCChHHHHhcccCC---------------CccHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHHH
Q 006099 505 LCIYQGNKGKAVRAGVVPTLMHLLTEP---------------GGGMVDEALAILAILSSHPEGK-AAIGAAEAVPVLVEV 568 (661)
Q Consensus 505 L~~~~~~~~~iv~~g~v~~Lv~lL~~~---------------~~~~~~~al~~L~~L~~~~~~~-~~i~~~g~i~~Lv~l 568 (661)
+....+....-.-...++.++..+... ...++..++.+|.+++..-... ... -...++.++.+
T Consensus 527 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~ 605 (861)
T 2bpt_A 527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRL 605 (861)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHH
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHH
Confidence 987655432111123566666665421 2345667888888776432210 001 11356778888
Q ss_pred hhCCCH-HHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 569 IGNGSP-RNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 569 L~~~~~-~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
+.+.+. .+++.++.++..++...+. ....+ ..+++.|...+.+.++.++..|..++..+.+.
T Consensus 606 l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 887766 7899999988888754322 12222 23788888888878888999999998877653
No 115
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.53 E-value=1.6e-08 Score=80.34 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=41.4
Q ss_pred CCCCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+.+++.|+||++.+.+|+.++|||+ ||+.|+.+| ..||.||.++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3457899999999999999999999 999999998 689999998763
No 116
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.52 E-value=4.6e-08 Score=101.48 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=45.3
Q ss_pred CCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 260 DDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
....||||.+.+.+|++++|||+||..||..|+..+..+||.||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34789999999999999999999999999999987778999999988754
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.51 E-value=2.5e-06 Score=96.51 Aligned_cols=252 Identities=12% Similarity=0.035 Sum_probs=185.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc-hhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~-k~~ 432 (661)
..++.+...|.+.++.++..|+.++..+...+++.. .++++.+..+|.+.|+.++..|+.+|..++..... ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 457888889999999999999999999998776543 26788889999999999999999999999865321 111
Q ss_pred hhhCCChHHHHHHHcc---------------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc------CC
Q 006099 433 IVSSGAVPSIVHVLRI---------------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE------GT 491 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~---------------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~ 491 (661)
-...++.++.+|.+ .++-.+...+.+|..++..++.. ....++.|..++.. .+
T Consensus 217 --~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 --FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp --HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred --HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 23678888887763 36778888889999888654321 12455666666542 23
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC
Q 006099 492 QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN 571 (661)
Q Consensus 492 ~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~ 571 (661)
..+...|+.++.++...+ .+. ..++..|..+|.+.++.++..|+..|..++.... .++. ...+.++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC
Confidence 467788888888875432 222 2467788888988889999999999998875422 2222 356788888888
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 572 GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 572 ~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.+..+|..|+.+|..++.... ... +++.|...+.+.+...+..+...+..++..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999987542 211 346777777778888888888888888764
No 118
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.47 E-value=2e-06 Score=100.87 Aligned_cols=275 Identities=13% Similarity=0.108 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhh-H-HHHHHhCCHHHHHHhhCCC--ChHHHHHHHHHHHhccCC-
Q 006099 353 RTKIEILLCKLTSG-SPEDQRSAAGEIRLLAKRNADN-R-VAIAEAGAIPLLVGLLSTP--DSRTQEHAVTALLNLSIC- 426 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L~~~~~~~-r-~~i~~~g~i~~Lv~lL~s~--~~~i~~~A~~~L~nLs~~- 426 (661)
...++.|++.+.++ ++..+..|+..+..++..-... + ..-.....++.++..+.+. +..++..|+.+|.++...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36789999999988 9999999999999998642211 0 0001123567778888886 889999999999887432
Q ss_pred Ccc-hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch--hhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHH
Q 006099 427 EDN-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN--KVTIGASGAIPPLVTLLSEGTQRGKKDAATALF 503 (661)
Q Consensus 427 ~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 503 (661)
..+ .........++.+...+.+.+++++..++.+|..+...... ...+ ....++.+...+.+.+..++..|+.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 00001122466666777778899999999999988754321 1111 1155667777778888999999999998
Q ss_pred HhhcccCch-----------------HHHHHcCChHHHHhcccCC-------CccHHHHHHHHHHHhcCChhhHHHHHhC
Q 006099 504 NLCIYQGNK-----------------GKAVRAGVVPTLMHLLTEP-------GGGMVDEALAILAILSSHPEGKAAIGAA 559 (661)
Q Consensus 504 nL~~~~~~~-----------------~~iv~~g~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~~~~~~i~~~ 559 (661)
.++...... ..-.-..+++.++..+... +..++..+..+|..++..-.. .+. .
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~ 368 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-E 368 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-H
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-H
Confidence 887653110 0111145777888887642 235777888888887753221 111 1
Q ss_pred CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 560 EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 560 g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
..++.+...+.+.++..|+.|+.+|..++.+.. ........ .+++.|+..+.+.++.++..+.++|..+...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 245666667777889999999999999997642 33322222 4788999999999999999999999888765
No 119
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2e-08 Score=80.07 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=40.3
Q ss_pred CCCCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+.+++.||||++.+.+|+.++|||+ ||+.|+.+ ...||.||.++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 4567899999999999999999999 99999964 3689999998864
No 120
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.43 E-value=9.8e-07 Score=95.49 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=160.8
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhH-HHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc-
Q 006099 354 TKIEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNR-VAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN- 429 (661)
Q Consensus 354 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~- 429 (661)
..++.++..+.+. ++.++..|+.++..+...-..+. ......-.++.+...+.+.+..++..++.+|..++.....
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887 78999999999988643111110 0001111467777788888999999999999998754221
Q ss_pred -hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc------------------hhhhhhh---cCCcHHHHHhh
Q 006099 430 -KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE------------------NKVTIGA---SGAIPPLVTLL 487 (661)
Q Consensus 430 -k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~------------------~~~~i~~---~g~i~~Lv~lL 487 (661)
+..+ ..+.++.++..+++.+.+++..++..+..++.... ....+.. ...+|.+++.+
T Consensus 252 ~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp CTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 1111 12677778888888889999999998888865420 0001111 23556666666
Q ss_pred hcC-------CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH--HHHHh
Q 006099 488 SEG-------TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK--AAIGA 558 (661)
Q Consensus 488 ~~~-------~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~--~~i~~ 558 (661)
... +...+..|+.+|..|+..-+. .++ ..+++.+...|.+++..+++.|+.+|+.++...... ...+
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l- 406 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-
Confidence 432 246788899999998876542 222 356677778888888999999999999999754311 1111
Q ss_pred CCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 559 AEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 559 ~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
..++|.++..|.+.++.+|..|+++|.+++..-
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999998643
No 121
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.43 E-value=4.5e-08 Score=87.38 Aligned_cols=56 Identities=21% Similarity=0.542 Sum_probs=49.0
Q ss_pred CCCccCcCCcccccCC-------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccch
Q 006099 259 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNY 315 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP-------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~ 315 (661)
++.+.||||++.+.+| +.++|||+||..||.+|+. ...+||.|+.++....+.+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChhcceeee
Confidence 5678999999999987 8889999999999999998 457999999999877766654
No 122
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.2e-07 Score=75.14 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=39.5
Q ss_pred CCccCcCCcccccC--------------Ceec-CCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 260 DDFRCPISLELMKD--------------PVIV-STGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 260 ~~f~CpIc~~~m~d--------------Pv~~-~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++-.|+||++.|.+ ++.+ +|||.|++.||.+|+. .+.+||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 35679999999877 4455 5999999999999998 45799999998753
No 123
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.34 E-value=4e-07 Score=111.56 Aligned_cols=272 Identities=13% Similarity=0.089 Sum_probs=188.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..+..++..+.+.|.+.+..|...|.+..+.....-..-.....++.|++.|.+.+..+|..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 5688899999999999999999999886543211000001124578899999999999999999999999764221 11
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh------hhhhhcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhh
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK------VTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLC 506 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~ 506 (661)
-...++.++..|.+.+..+|..|+.+|..++..-... ..-.....+|.|+..+. +++...+..|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1235667777777777788999999888877542211 11122367899999998 477899999999999988
Q ss_pred cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC-HHHHHHHHHHHH
Q 006099 507 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-PRNRENAAAVLV 585 (661)
Q Consensus 507 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~ke~A~~~L~ 585 (661)
...+....-.-..+++.|+..|.+++..++..|+.+|..++...... + -...++.++..|.... +..+..++.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 54221100011346778888888888899999999999998754322 2 1245788888886543 456777888888
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 586 HLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 586 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
.++...+..... .-..+++.++..+.+.++.+++.|..++..+.+.
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 887643321100 1135788999998888899999999999888764
No 124
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.29 E-value=4.1e-07 Score=69.82 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=42.6
Q ss_pred CCCccCcCCcccccCCeec--CCCcc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDPVIV--STGQT-YERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~--~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
+++..|+||++-..+++++ +|||. +|..|+.+|+. .+..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 3567899999999999987 99999 89999999997 5678999999875
No 125
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.26 E-value=2.4e-07 Score=77.29 Aligned_cols=66 Identities=14% Similarity=0.355 Sum_probs=48.2
Q ss_pred CCccCcCCcccccCCeec---CCCccccHHHHHHHHHh----C---CCCCCC--CCCC--CcCCCCccchhhhhhHHHHH
Q 006099 260 DDFRCPISLELMKDPVIV---STGQTYERSCIEKWLEA----G---HRTCPK--TQQT--LTSTAVTPNYVLRSLIAQWC 325 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~---~cg~t~~r~~I~~w~~~----~---~~~cP~--~~~~--l~~~~l~~n~~l~~~i~~~~ 325 (661)
+.|.||||++.+.+|+.+ +|||.||+.|+..|+.. | ...||. |+.. ++...+ .+....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999764 69999999999999973 3 247999 9887 543332 2333345566665
Q ss_pred H
Q 006099 326 E 326 (661)
Q Consensus 326 ~ 326 (661)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.26 E-value=4.9e-06 Score=82.21 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=139.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhh-cCCHHHHHHHHHHHHHhhcccCchHHHHH
Q 006099 440 PSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLS-EGTQRGKKDAATALFNLCIYQGNKGKAVR 517 (661)
Q Consensus 440 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~iv~ 517 (661)
+.+.+.+.+.++..|..|+..|..+... +.....- -...++.|...+. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3477888888999999999999988765 2211000 1245777888884 88999999999999999964332222222
Q ss_pred cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcC-CHHH-H
Q 006099 518 AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAG-DQQY-L 595 (661)
Q Consensus 518 ~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~-~~~~-~ 595 (661)
..+++.|+..+.+.+..++..|..+|.+++...... .+++.+...|++.++.+|..++..|..+... ++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 458899999999999999999999999988754311 2577888889988999999999999996433 3321 1
Q ss_pred HHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 596 AEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 596 ~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
.... ..+++.|..++.+..+++|..|..+|..+...-
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1112 247899999999999999999999999988654
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.25 E-value=3.5e-06 Score=83.23 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=137.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhH-HHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcchhHhhh
Q 006099 358 ILLCKLTSGSPEDQRSAAGEIRLLAKRNADNR-VAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNKGSIVS 435 (661)
Q Consensus 358 ~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~k~~i~~ 435 (661)
.+.+.+.+.+|..+..|+..|..+....+... ..+ ..+++.|...|. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 47788899999999999999999987533210 001 134778888894 89999999999999999853211101112
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch---
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK--- 512 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~--- 512 (661)
...++.|+..+.+.+..+|..|..+|..+...... ...++.|...+++.++.++..++.+|..+....+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 44788888888888999999999999998764321 235788888999999999999999999965443211
Q ss_pred HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
...+ ..+++.|+.+|.+.+..++..|..+|..++..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1222 36889999999999999999999999987743
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.22 E-value=8.5e-07 Score=75.25 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=39.4
Q ss_pred CccCcCCcccccCC------------------eecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDP------------------VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dP------------------v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
+-.|+||++.|.+| +.++|||.|+..||.+|+. .+.+||.||..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 45799999998876 3369999999999999998 5789999999764
No 129
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.22 E-value=6e-07 Score=68.64 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=41.7
Q ss_pred CCccCcCCcccccCCeec--CCCcc-ccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLELMKDPVIV--STGQT-YERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~--~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
....|+||++-..+++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 346799999999999988 99998 999999999974 578999999875
No 130
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.19 E-value=5.2e-05 Score=85.57 Aligned_cols=255 Identities=15% Similarity=0.107 Sum_probs=168.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh--CCCChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
-.+..+.+.|.++|+.++.-|+..|.++. .++. . ...+|.+.++| .+.++-++..|+.++.++.... .+
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~----~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~ 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVG--SREM----A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PD 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHH----H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GG
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHH----H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hh
Confidence 35667888889999999999999999985 3332 2 23568889999 8899999999999999987632 23
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhh----cC-------------CHHH
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLS----EG-------------TQRG 494 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~-------------~~~~ 494 (661)
.+...+.++.+..+|.+.++.++..|+.++..++..+... -...++.+++.|. .+ ++-+
T Consensus 182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE----FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH----HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 3323589999999998889999999999999997654321 0133444444443 22 4556
Q ss_pred HHHHHHHHHHhhcccC--chHHHHHcCChHHHHhccc---------CCC--ccHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 006099 495 KKDAATALFNLCIYQG--NKGKAVRAGVVPTLMHLLT---------EPG--GGMVDEALAILAILSSHPEGKAAIGAAEA 561 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~--~~~~iv~~g~v~~Lv~lL~---------~~~--~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 561 (661)
+...+..|..++..++ .+..+.+ .+..++..+. +.+ ..+.-.|+.++..+...++... .+
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~ 330 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA 330 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence 7777777777765332 2222222 3333332221 112 2666677777777764443222 24
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhh-cCChHHHHHHHHHHHHHHh
Q 006099 562 VPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQ-NGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 562 i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~k~~A~~lL~~L~~ 631 (661)
+..|..+|.+.++.+|..|+..|..++...+.. .++ ......++..+. +.+..++.+|..+|..|..
T Consensus 331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 331 CNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 566777787778888888888888888765310 111 234556666666 7777788888888877764
No 131
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.10 E-value=0.0001 Score=83.24 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=177.1
Q ss_pred hHHHHHHHHH--ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 354 TKIEILLCKL--TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 354 ~~i~~Lv~~L--~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
..++.+.+.+ .+.++.++..|+.++..+.+.+++.. ...++++.|..+|.+.|+.++..|+.+|..++.+...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4567778888 78899999999999999988666532 2248999999999999999999999999998764321
Q ss_pred HhhhCCChHHHHHHHc----cC-------------CHHHHHHHHHHHHHcccCCc--hhhhhhhcCCcHHHHHhhh----
Q 006099 432 SIVSSGAVPSIVHVLR----IG-------------SMEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTLLS---- 488 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~----~~-------------~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~---- 488 (661)
. -...++.+++.|. .+ ++-.+.....+|..+...++ .+..+. +.++.++..+.
T Consensus 221 ~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 1 1233444554443 22 46678888888888875432 222221 23333333221
Q ss_pred -----cCC--HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 006099 489 -----EGT--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEA 561 (661)
Q Consensus 489 -----~~~--~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 561 (661)
+.+ ..+...|+.++..+...+ .++ ..++..|..+|.+.+++++-.|+..|..++........+. ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcH----HHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 112 256677888888875322 222 2466788899988889999999999999987643222332 35
Q ss_pred hHHHHHHhh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 562 VPVLVEVIG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 562 i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
...++..|+ +.++.+|..|+.+|..++.. .+... ++..|...+...+...+..+...+..++..
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 778888888 88899999999999999853 34433 455677777778888888888888877643
No 132
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.06 E-value=6.5e-07 Score=71.80 Aligned_cols=45 Identities=18% Similarity=0.416 Sum_probs=39.9
Q ss_pred CCCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.++..|+||++.+.+|+.++|||. ||..|+..| ..||.||.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 356789999999999999999999 999999877 389999998864
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.05 E-value=3.3e-05 Score=94.54 Aligned_cols=273 Identities=11% Similarity=0.093 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
...++.|+..+. +.++..+..|+..|..++......-.. .-...++.|+..|.+.+..+|..|+.+|..++......
T Consensus 132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~- 209 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI- 209 (1230)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH-
Confidence 367888999998 588999999999999988532221000 11345778888888889999999999999998653221
Q ss_pred HhhhCCChHHHHHHHccCC-HHHHHHHHHHHHHcccCCchhhhhhh--cCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006099 432 SIVSSGAVPSIVHVLRIGS-MEARENAAATLFSLSVIDENKVTIGA--SGAIPPLVTLLSEGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~-~e~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 508 (661)
+ -...++.++..|.+.+ ...+..++.++..++..-.. .+.. ...++.++..+.+.++.++..++.++..++..
T Consensus 210 -~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 210 -V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred -H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 1 2345778888886542 35666777888777654221 2222 37888999999888888999999999888765
Q ss_pred cCchHHHHHcCChHHHHhcccC-------------------------------------CCccHHHHHHHHHHHhcCChh
Q 006099 509 QGNKGKAVRAGVVPTLMHLLTE-------------------------------------PGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 509 ~~~~~~iv~~g~v~~Lv~lL~~-------------------------------------~~~~~~~~al~~L~~L~~~~~ 551 (661)
.+....-.-..+++.++..+.. ....++..|+.+|..++....
T Consensus 286 ~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~ 365 (1230)
T 1u6g_C 286 CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 365 (1230)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch
Confidence 3321111112355556555531 012346778888888776322
Q ss_pred -hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC------------------HHHHHHHHHcCCHHHHHHhhh
Q 006099 552 -GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD------------------QQYLAEAKELGVMGPLVDLAQ 612 (661)
Q Consensus 552 -~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~------------------~~~~~~~~~~g~i~~L~~ll~ 612 (661)
.-..+. ...++.++..+.+.++.+|..|+.+|..++... +.....-.-..+++.+...+.
T Consensus 366 ~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~ 444 (1230)
T 1u6g_C 366 EMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK 444 (1230)
T ss_dssp TTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT
T ss_pred hHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc
Confidence 122222 346788888887778899999998888776421 101111122345667777788
Q ss_pred cCChHHHHHHHHHHHHHHhh
Q 006099 613 NGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 613 ~~~~~~k~~A~~lL~~L~~~ 632 (661)
+.+++.+..+..+|..+...
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 88999998888888877653
No 134
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.03 E-value=9.2e-07 Score=91.34 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=41.6
Q ss_pred CCCCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
+.+++.||||++.+.+||.++|||+ ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567899999999999999999999 999999988 589999998763
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.01 E-value=2.5e-05 Score=74.24 Aligned_cols=221 Identities=16% Similarity=0.076 Sum_probs=159.8
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc-hhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc-hhhhh
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE-NKVTI 474 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~-~~~~i 474 (661)
.+..|+.+|...|+.++.+|+.+|..+-+..+. -....-...++.++.++++.+..+.-.|+.+|..|-.+.+ .....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 567899999999999999999999999775322 2223345679999999999999999999999998876543 11111
Q ss_pred hhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHH
Q 006099 475 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKA 554 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~ 554 (661)
...+..|.+++.++++-....|+..|..|......+ +++..+..++.+.+..++..++.+|.+++...+...
T Consensus 114 --~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 --LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp --HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred --HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 134577888889999999999999999994443333 345577888888999999999999999987543221
Q ss_pred HHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH--HHHHHHHcCCHHHHHHhh-hcCChHHHHHHHHHHHHH
Q 006099 555 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ--YLAEAKELGVMGPLVDLA-QNGTDRGKRKAAQLLERM 629 (661)
Q Consensus 555 ~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll-~~~~~~~k~~A~~lL~~L 629 (661)
.+ .+++.-+-++|++.++.+++.|..+|..+.+..-. ....+. ++....-.+. ..|.|..+.+|......+
T Consensus 186 i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 186 HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 11 24566777889999999999999999999875310 011110 1222223344 577888888887665544
No 136
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.2e-05 Score=79.77 Aligned_cols=189 Identities=8% Similarity=0.066 Sum_probs=135.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-HHhhChhhHHHHHH-hCCHHHHHHhh-CCCChHHHHHHHHHHHhccCCCcchhHh--
Q 006099 359 LLCKLTSGSPEDQRSAAGEIRL-LAKRNADNRVAIAE-AGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKGSI-- 433 (661)
Q Consensus 359 Lv~~L~s~~~~~~~~Al~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~s~~~~i~~~A~~~L~nLs~~~~~k~~i-- 433 (661)
+-+.+.+.+|..+..|+..|.. +..+.+.....-.+ ...+..|...+ ++.+..++..|+.+|..|+..-.. ..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 5667789999999999999999 87543321100001 13467788888 688999999999999999843110 111
Q ss_pred -hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 434 -VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 434 -~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
...-.++.++..+++....+++.+..+|..++..- +....-.-...++.|+..|++.++.++..++.+|..+......
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11236788888888888889999888888887532 1110000114677888888888999999999999999876553
Q ss_pred h-HH---HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC
Q 006099 512 K-GK---AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS 548 (661)
Q Consensus 512 ~-~~---iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 548 (661)
. .. .+...+++.|.+++.+.+..++..|..+|..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1 22 2225799999999999999999999999997763
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=8.6e-06 Score=65.18 Aligned_cols=51 Identities=16% Similarity=0.390 Sum_probs=42.2
Q ss_pred CCCCccCcCCcccc--cCCeecCCC-----ccccHHHHHHHHHhC-CCCCCCCCCCCcC
Q 006099 258 IPDDFRCPISLELM--KDPVIVSTG-----QTYERSCIEKWLEAG-HRTCPKTQQTLTS 308 (661)
Q Consensus 258 ~p~~f~CpIc~~~m--~dPv~~~cg-----~t~~r~~I~~w~~~~-~~~cP~~~~~l~~ 308 (661)
..++..|+||++-+ .+|++++|+ |.|.+.||.+|+... ..+||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999876 478889996 999999999999854 4799999998863
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.97 E-value=7.4e-07 Score=79.20 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=91.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
..++.++..|.+.++.++..|+..|..+.. ..++.|+.+|+++++.+|..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 557788899988888888888877765531 136999999999999999999999988752
Q ss_pred hhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006099 434 VSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL 505 (661)
Q Consensus 434 ~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 505 (661)
..+++.|+..|++.++.+|..|+++|..+. ...+++.|+.++++.++.++..|+.+|.++
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235888999999889999999999999874 234688999999988899999999888754
No 139
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=8.3e-06 Score=63.21 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCCccCcCCcccccCCeecCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQT-YERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t-~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.++..|+||++...+++.++|||. ||..|+.. ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 456789999999999999999999 99999984 3689999998764
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.96 E-value=1.2e-06 Score=77.91 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=92.4
Q ss_pred hCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhh
Q 006099 395 AGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI 474 (661)
Q Consensus 395 ~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i 474 (661)
...++.|+.+|+++++.+|..|+.+|.++.. ..++.|+.+|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4578899999999999999998888876632 136899999999999999999999998752
Q ss_pred hhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHH
Q 006099 475 GASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 545 (661)
Q Consensus 475 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~ 545 (661)
..+++.|+.++++.++.++..|+++|.++.. ..+++.|..+|.+++..++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2458999999999999999999999998862 2467889999988888999998888754
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.89 E-value=7.1e-05 Score=79.43 Aligned_cols=263 Identities=12% Similarity=0.097 Sum_probs=171.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHH--HHHHhhCC-CChHHHHHHHHHHHhccCCCcchhHhhhCC--Ch
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIP--LLVGLLST-PDSRTQEHAVTALLNLSICEDNKGSIVSSG--AV 439 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g--~i 439 (661)
.+++-.+..|...+..++..+......+ ...+. .++..|.+ ++...+..++.+|..|...++.|..+.+.+ .+
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM 213 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence 3445555666666666653332211111 01112 34455555 345667778888988888888888887543 35
Q ss_pred HHHHHHHcc----------------C-CHHHHHHHHHHHHHcccCCchhhhhhhcCCc--HHHHHhhhcC-CHHHHHHHH
Q 006099 440 PSIVHVLRI----------------G-SMEARENAAATLFSLSVIDENKVTIGASGAI--PPLVTLLSEG-TQRGKKDAA 499 (661)
Q Consensus 440 ~~Lv~lL~~----------------~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~ 499 (661)
+.++.++.. + ...++.+++-+++-|+..++....+...+.. +.|+.+++.. .+++.+.++
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 666554431 1 2567899999999999998877777665533 6677777765 588999999
Q ss_pred HHHHHhhcccC-c----hHHHH-HcCChHHHHhcccC---CCccHHHHHHHHHH-------HhcCChhhHH---------
Q 006099 500 TALFNLCIYQG-N----KGKAV-RAGVVPTLMHLLTE---PGGGMVDEALAILA-------ILSSHPEGKA--------- 554 (661)
Q Consensus 500 ~aL~nL~~~~~-~----~~~iv-~~g~v~~Lv~lL~~---~~~~~~~~al~~L~-------~L~~~~~~~~--------- 554 (661)
.+|.||..... + ...++ ..++ .+++..|.. .|+++.+..-.+.. .+++.++...
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 99999987652 1 12233 3344 556666644 56655544322222 2332222221
Q ss_pred -------HHH--------h--CCChHHHHHHhhC----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 006099 555 -------AIG--------A--AEAVPVLVEVIGN----------GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPL 607 (661)
Q Consensus 555 -------~i~--------~--~g~i~~Lv~lL~~----------~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 607 (661)
.+. + ...+..|+++|.+ .++.+..-||.=|+.++.+.|..+..+-+.|+-..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 222 1 1357889999973 246677778888999999999888888889999999
Q ss_pred HHhhhcCChHHHHHHHHHHHHHH
Q 006099 608 VDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 608 ~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
+.++.+.+++++..|..++.-+-
T Consensus 453 M~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 453 MELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.84 E-value=5.8e-05 Score=74.83 Aligned_cols=192 Identities=9% Similarity=0.066 Sum_probs=136.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-cccC-Cchhhhhhh-cCCcHHHHHhh-hcCCHHHHHHHHHHHHHhhcccC-chHH-
Q 006099 441 SIVHVLRIGSMEARENAAATLFS-LSVI-DENKVTIGA-SGAIPPLVTLL-SEGTQRGKKDAATALFNLCIYQG-NKGK- 514 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~-~~~~- 514 (661)
.+...+.+.++.-|..|+..|.. +... .+....... ...+..|...+ ++.+..++..|+.+|..|+..-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788899999999999999 8643 211100111 24577778888 67788999999999999986433 1111
Q ss_pred HHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 515 AVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIG--AAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 515 iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
-...-+++.++..+.+....+++.+..+|..++..-+. .... -..+++.|+..|++.++.+|+.++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11223788999999988888988888888877653211 0000 00256788888888899999999999999886544
Q ss_pred ---HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 593 ---QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 593 ---~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
......+...++|.|..++.+.++.+|..|..+|..+...-
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 22222232579999999999999999999999999987654
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.81 E-value=2.9e-06 Score=72.96 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=0.0
Q ss_pred ccCcCCcccccCCe-----------------e-cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELMKDPV-----------------I-VSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m~dPv-----------------~-~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
-.|+||++.|.+|. + ++|||.|+..||.+|+. .+.+||.||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 47999999998753 2 48999999999999998 4789999998754
No 144
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.79 E-value=0.00069 Score=78.13 Aligned_cols=236 Identities=17% Similarity=0.126 Sum_probs=162.4
Q ss_pred hHHHHHHHHHccCC--------HHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 354 TKIEILLCKLTSGS--------PEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~--------~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
..+..|...|.+.+ +.++..|+-.|+...-++. + ..+++.|..+|.+.+..+++.|+.+|+.+-.
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 35666777776544 5567777777777543221 1 1246778888887777777778777876633
Q ss_pred CCcchhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc-CCHHHHHHHHHHHH
Q 006099 426 CEDNKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-GTQRGKKDAATALF 503 (661)
Q Consensus 426 ~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~ 503 (661)
...|.. ++..|+..+.+ .+..++..++..|..+.. ++...++.+++.|.. .++-++..++.++.
T Consensus 502 GTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 502 GTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp TCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 322222 34666666544 467888888888887753 334567888888875 56777777777777
Q ss_pred HhhcccCchHHHHHcCChHHHHhccc-CCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHh-hCCCHHHHHHHH
Q 006099 504 NLCIYQGNKGKAVRAGVVPTLMHLLT-EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVI-GNGSPRNRENAA 581 (661)
Q Consensus 504 nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~ke~A~ 581 (661)
--....+|.. +|+.|+..+. +.+..++..|+..|+.+....+ ..++.++.+| ++.++.+|..|+
T Consensus 568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 6655555542 4555666553 4667788889888887765432 3577777744 578899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 582 AVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 582 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
.+|..+|.+++. ..++..|..++.+.+..+++.|..+|..+..
T Consensus 634 lALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 634 FALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 999999987752 1256678888888899999999999998863
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.77 E-value=0.00037 Score=70.45 Aligned_cols=177 Identities=15% Similarity=0.092 Sum_probs=137.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSI 433 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i 433 (661)
-.+..+++.|.+++....+.++..|+.+...+......++..+++..|+......+..++.+++++|.+|-.+..+..-+
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 56788999999999999999999999955567888888999999999999999999999999999999998876666555
Q ss_pred h-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCch-hhhhhhc----------CCcHHHHHhhh---cCCHHHHHHH
Q 006099 434 V-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDEN-KVTIGAS----------GAIPPLVTLLS---EGTQRGKKDA 498 (661)
Q Consensus 434 ~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~-~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~~a 498 (661)
+ ....|..|..++.+....+...|..+|..++...+. ...+.+. ..++.|+.+|. .++.+++.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5 667888899999887889999999999999887653 2222221 24889999997 6789999998
Q ss_pred HHHHHHhhcccCc---hHHHH----HcCChHHHHhcccC
Q 006099 499 ATALFNLCIYQGN---KGKAV----RAGVVPTLMHLLTE 530 (661)
Q Consensus 499 ~~aL~nL~~~~~~---~~~iv----~~g~v~~Lv~lL~~ 530 (661)
...|-.+....+. +..++ +.|+=..+.+.+..
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 8877766555332 22333 34444455555654
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.67 E-value=0.00061 Score=68.92 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=133.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-cccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH-HcC
Q 006099 442 IVHVLRIGSMEARENAAATLFS-LSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV-RAG 519 (661)
Q Consensus 442 Lv~lL~~~~~e~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv-~~g 519 (661)
+++.|.+++.+.+..+..-|.. ++.+.+....++..+++..|+.++..++...+..+++||.+|..+......++ ...
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4455666666777777777777 66667788899999999999999999999999999999999999877765565 456
Q ss_pred ChHHHHhcccCCCccHHHHHHHHHHHhcCChh-hHHHHHh-------C-C--ChHHHHHHhh---CCCHHHHHHHHHHHH
Q 006099 520 VVPTLMHLLTEPGGGMVDEALAILAILSSHPE-GKAAIGA-------A-E--AVPVLVEVIG---NGSPRNRENAAAVLV 585 (661)
Q Consensus 520 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~-~~~~i~~-------~-g--~i~~Lv~lL~---~~~~~~ke~A~~~L~ 585 (661)
.|..+..++.+.+..+...|+.+|..++...+ +...+.+ . | -...|+.+|+ +++..++.+|...+.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 88899999988889999999999999987654 3322221 1 2 3779999997 678999999998887
Q ss_pred HHhcCCH--H----HHHHHHHcCCHHHHHHhhhcC--ChHHHH
Q 006099 586 HLCAGDQ--Q----YLAEAKELGVMGPLVDLAQNG--TDRGKR 620 (661)
Q Consensus 586 ~L~~~~~--~----~~~~~~~~g~i~~L~~ll~~~--~~~~k~ 620 (661)
.+..+.+ . ....+.+.|+-..+...+.+. ++..++
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 7765433 2 223334556666666666554 334443
No 147
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.0059 Score=55.76 Aligned_cols=213 Identities=14% Similarity=0.177 Sum_probs=150.6
Q ss_pred CCHHHHHHhhCCCChHHHHHHHHHHHhccCC-CcchhHhhhCCChHHHHHHHc-cCCHHHHHHHHHHHHHcccCCchhhh
Q 006099 396 GAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAVPSIVHVLR-IGSMEARENAAATLFSLSVIDENKVT 473 (661)
Q Consensus 396 g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a~~~L~~Ls~~~~~~~~ 473 (661)
.++..++.+|.++-..+|.+|+.++.+++.. ++-... .+..|+.+++ +....+....+.+++.++...+.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--- 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--- 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH---
Confidence 4678899999988889999999999999864 222222 2444555654 44666666777888887754321
Q ss_pred hhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhH
Q 006099 474 IGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGK 553 (661)
Q Consensus 474 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~ 553 (661)
++ .+.+|.|..-.+-|+++++.+...+|..++...+.- -.+++.-+..++.+++..-+-.|+.++..+..+.
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--- 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--- 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT---
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC---
Confidence 11 135666666667789999999999999988755432 2345667888898887666666777777665443
Q ss_pred HHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 554 AAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 554 ~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
..-+. -.+|.|..+|.+++.-+|..|+.+|.+++..++..+..+. .-+.=+.+.++.++++....|..+.-
T Consensus 176 ~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22222 3689999999999999999999999999999987554432 23344556677888888887776653
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.57 E-value=0.00059 Score=70.70 Aligned_cols=265 Identities=11% Similarity=0.012 Sum_probs=147.7
Q ss_pred ccchhhhhhHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH
Q 006099 312 TPNYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVA 391 (661)
Q Consensus 312 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~ 391 (661)
.+|..+|.++=.+...-.- .|.- ---.+..+.+.+.++|+-++--|++.|..+.. ++--.
T Consensus 79 s~d~~lKrLvYLyl~~~~~-~~~e----------------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~- 138 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSC-IAED----------------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ- 138 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTT-TSSC----------------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-
T ss_pred CCCHHHHHHHHHHHHHhCC-CHHH----------------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-
Confidence 5677888886665543211 1100 12567889999999999999999999999863 22222
Q ss_pred HHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchh
Q 006099 392 IAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENK 471 (661)
Q Consensus 392 i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~ 471 (661)
...+.+.+.|.+.++-++..|+.+...|.... .+.+ .+.++.+-+++.+.++-+..+|..+|..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 24577888889999999999999988886542 2332 3689999999999899999999999999986542
Q ss_pred hhhhhcCCcHHHHHhhhcC---CHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcC
Q 006099 472 VTIGASGAIPPLVTLLSEG---TQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSS 548 (661)
Q Consensus 472 ~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 548 (661)
.++..|+..+..+ ++-.+..-++.+..+...++.. .....++.+..+|++.+..+.-.|+.++..+..
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1345556655553 3444444455554554433111 224566778888888888999999999988765
Q ss_pred ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHH
Q 006099 549 HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQ 624 (661)
Q Consensus 549 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~ 624 (661)
.+.. .. ..++..|..+|.+.++.+|-.|+..|..+....|..... .-.-+..++.+++..+.--|..
T Consensus 280 ~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 280 CSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred CCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence 3321 11 235667778888888999999999999998877744432 2234455566655555444443
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.51 E-value=0.00091 Score=69.27 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=156.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV 434 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~ 434 (661)
.....++.+.+.|...++-..-.+..+++..++. + =++..|.+=++++++-++-.|+++|+++...+-
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------ 136 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM------ 136 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------
Confidence 3445677888899888888888888887653221 1 257788888999999999999999999864321
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHH
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGK 514 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 514 (661)
-....+.+.+.|.+.++-++..|+-+...|....+. .+ .+++..+-+++.+.++-+..+|+.+|+.+...+. .
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~- 209 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L- 209 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H-
Confidence 122445566777788999999999999988755432 22 3789999999999999999999999999987541 1
Q ss_pred HHHcCChHHHHhcccCC---CccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 515 AVRAGVVPTLMHLLTEP---GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 515 iv~~g~v~~Lv~lL~~~---~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
++..|+..+... ++-.+-..+.++..++..++.. .....++.+..+|++.++.+.-.|+.++..+...+
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 333445444332 3333333444444443332111 12345667777788889999999999999885532
Q ss_pred HHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhHHH
Q 006099 592 QQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 592 ~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
.. . -..++..|..++.+.++.+|-.|...|..+....+.
T Consensus 282 ~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 282 AK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 21 1 133567788888889999999999988888776654
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.39 E-value=0.0034 Score=66.64 Aligned_cols=230 Identities=14% Similarity=0.133 Sum_probs=150.9
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHhC--CHHHHHHhhCC---------------C--ChHHHHHHH
Q 006099 358 ILLCKLTS-GSPEDQRSAAGEIRLLAKRNADNRVAIAEAG--AIPLLVGLLST---------------P--DSRTQEHAV 417 (661)
Q Consensus 358 ~Lv~~L~s-~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~s---------------~--~~~i~~~A~ 417 (661)
.++..|.+ .+.+.+.-++..|..+.. .+++|..+.+.+ .+|+++.+++. + +..++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 35555555 245567778889998886 788898887543 47887665431 1 356789999
Q ss_pred HHHHhccCCCcchhHhhhCCCh--HHHHHHHccC-CHHHHHHHHHHHHHcccCCc-h-hh----hhhhcCCcHHHHHhhh
Q 006099 418 TALLNLSICEDNKGSIVSSGAV--PSIVHVLRIG-SMEARENAAATLFSLSVIDE-N-KV----TIGASGAIPPLVTLLS 488 (661)
Q Consensus 418 ~~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~-~-~~----~i~~~g~i~~Lv~lL~ 488 (661)
.+++-|+.+++....+...+.. ..++.+++.. -+.+.+-+.++|.||...+. + .. .+...++ ..+++.|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999997766666666543 5666777765 57888899999999987652 1 11 1222334 55666666
Q ss_pred cC---CHHHHHHHHHH-------HHHhhcccCchH------------------------HHHH--cCChHHHHhcccC--
Q 006099 489 EG---TQRGKKDAATA-------LFNLCIYQGNKG------------------------KAVR--AGVVPTLMHLLTE-- 530 (661)
Q Consensus 489 ~~---~~~~~~~a~~a-------L~nL~~~~~~~~------------------------~iv~--~g~v~~Lv~lL~~-- 530 (661)
.. |+++..+.-.. +..++..++-+. ++-+ ..++..|+.+|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 53 55555433222 222222221111 1211 2256788888863
Q ss_pred --------CCccHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 531 --------PGGGMVDEALAILAILSS-HPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 531 --------~~~~~~~~al~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
.++.+..-|+.=|+.++. +|.+|..+-+.|+=..+++++.+.++.+|.+|..++..+..
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 245555566666666655 67888888778988899999999999999999998887654
No 151
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.29 E-value=0.011 Score=68.84 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=182.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChh---hHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCC-Ccc
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNAD---NRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSIC-EDN 429 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~-~~~ 429 (661)
+.+..+.+.+.+.... ..|+..+..++..... .-..+ .+.+|.++..+.+.+..++..|-.++..+... +.+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5667777777654333 8888888888854321 11222 26789999999988899998887777776432 111
Q ss_pred hhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006099 430 KGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLC 506 (661)
Q Consensus 430 k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 506 (661)
.+ ...++.|+..|.+. .+..+..|+.++..|+... ..+++.. ..||.+.+.+.+..+++++.|..++..+|
T Consensus 130 --a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 130 --AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp --GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred --HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 11 44688899988766 5899999999999998644 4555544 78888888888888999999999999988
Q ss_pred cccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhh---HHHHHhCCChHHHHHHhhCCCHHHHHHHHHH
Q 006099 507 IYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEG---KAAIGAAEAVPVLVEVIGNGSPRNRENAAAV 583 (661)
Q Consensus 507 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~ 583 (661)
..-+|+.. ...+|.|++.+.+++. +..++..|..-+...+. .-.+ .+|.|.+-|...+...+..++.+
T Consensus 204 ~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~ 274 (986)
T 2iw3_A 204 ETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVI 274 (986)
T ss_dssp GGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEE
Confidence 76666531 3578899999987633 45555555433332221 1111 35777777777788889999999
Q ss_pred HHHHhc--CCHHHHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHHHHHhhH
Q 006099 584 LVHLCA--GDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 584 L~~L~~--~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~L~~~~ 633 (661)
+-|||. .+|..+..+ -...+|.|...... .+|++|+.|..++..|.+..
T Consensus 275 ~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 275 IDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred EcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 999996 455444333 34577888777654 48999999999999886543
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.045 Score=50.09 Aligned_cols=216 Identities=17% Similarity=0.171 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCCcch
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~~~k 430 (661)
+...+..+++.|.++-|.+|..|+..|..+++..++....+ +..|+-+++ ++....-.....+++.++...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 46788999999999999999999999999998877765444 455666654 445555344457787776431
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
..++ .+.+|.|..-..-|++.++.+...+|..++..++. .-.+.+.-+..++.+.+..-+-.| |..+..-.+
T Consensus 102 Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~a---LnFi~alGe 173 (253)
T 2db0_A 102 PELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTA---LNFIEAMGE 173 (253)
T ss_dssp HHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHH---HHHHHTCCT
T ss_pred HHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHH---HHHHHHHhc
Confidence 1111 22345555555667999999999999988765431 112456677888887775444444 444444555
Q ss_pred chHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 511 NKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 511 ~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
|..+.+. -.+|.|..+|.+.+.-++..|+.+|.+++...+....+ +..-++-+++.+..++......|..|..
T Consensus 174 n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-----i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-----HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6555553 47899999999999999999999999999865433222 2234555667788888877777777654
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.18 E-value=0.042 Score=63.50 Aligned_cols=241 Identities=15% Similarity=0.065 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh-CCCChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL-STPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
...+..|+..|.+.+......|+..|..+..++. +. .++..|+..+ ...+..+++.++..|+.+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 4567888888887776666677777776643221 11 1345556544 345778888888888876532
Q ss_pred HhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhc-CCHHHHHHHHHHHHHhhccc
Q 006099 432 SIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSE-GTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~ 509 (661)
....++.+++.|.. .++-+|..++.++.--.....+ ..+|+.|++.+.+ .+..++..|+.+|..+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 34567788888875 4677777776666433222222 2345667776654 46788899999999887665
Q ss_pred CchHHHHHcCChHHHHhccc-CCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHh
Q 006099 510 GNKGKAVRAGVVPTLMHLLT-EPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 510 ~~~~~iv~~g~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~ 588 (661)
+ ..++.++.+|. +.++.++..|..+|+.++...... .++..|..++++.++.++..|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 35677777664 578899999999999987644321 24567777888889999999999999998
Q ss_pred cCCHHH-HHHHHHcCCHHHHHHhhhc--CChHHHHHHHHHHHHHH
Q 006099 589 AGDQQY-LAEAKELGVMGPLVDLAQN--GTDRGKRKAAQLLERMS 630 (661)
Q Consensus 589 ~~~~~~-~~~~~~~g~i~~L~~ll~~--~~~~~k~~A~~lL~~L~ 630 (661)
.++... ...+ .++...|.....+ .++.++-.|.-+...+.
T Consensus 676 ~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 676 IQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 765422 0011 1134456666653 46777777777776664
No 154
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00079 Score=52.57 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=37.0
Q ss_pred ccCcCCcccccCCee-cCCCccccHHHHHHHHHhC-CCCCCCCCCCCc
Q 006099 262 FRCPISLELMKDPVI-VSTGQTYERSCIEKWLEAG-HRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m~dPv~-~~cg~t~~r~~I~~w~~~~-~~~cP~~~~~l~ 307 (661)
-.|+||.+++..=.. ..|+|.|-..||.+||+.. ..+||.|+..+.
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 469999998863333 3799999999999999843 379999998775
No 155
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.95 E-value=0.00088 Score=50.12 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=39.4
Q ss_pred CCccCcCCcccccCCeecCCCc-----cccHHHHHHHHH-hCCCCCCCCCCCCc
Q 006099 260 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIEKWLE-AGHRTCPKTQQTLT 307 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~~~cg~-----t~~r~~I~~w~~-~~~~~cP~~~~~l~ 307 (661)
+.-.|.||++-..+|.+.||.. .|-+.|+.+|+. +++.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457999998878888888653 689999999998 46789999998765
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.013 Score=58.69 Aligned_cols=186 Identities=14% Similarity=0.136 Sum_probs=123.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--H-HHHHh-CCHHHHHHhhCCCChHHHHHHHHHHHhccCCC---c-ch
Q 006099 359 LLCKLTSGSPEDQRSAAGEIRLLAKRNADNR--V-AIAEA-GAIPLLVGLLSTPDSRTQEHAVTALLNLSICE---D-NK 430 (661)
Q Consensus 359 Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r--~-~i~~~-g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~---~-~k 430 (661)
|-+.|.+.+|..|.+|+..|..+....+... . .+... ..++.+-..+.+.|..++..++.+|..++..- . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6688999999999999999988765432211 1 11112 34566677888999999999999988876431 1 11
Q ss_pred h--HhhhCCChHHHHHH-HccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006099 431 G--SIVSSGAVPSIVHV-LRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCI 507 (661)
Q Consensus 431 ~--~i~~~g~i~~Lv~l-L~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 507 (661)
. ...-...++.|+.- |.+....++..+..++..+........ .+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 11234556667764 666778888888888877754332211 124566667788899999999999988765
Q ss_pred ccCch---HHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCC
Q 006099 508 YQGNK---GKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSH 549 (661)
Q Consensus 508 ~~~~~---~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 549 (661)
..+.+ ....-..+++.+..+|.+.++.+++.|..++..+-.+
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 42221 1111123555677788899999999999999877653
No 157
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.65 E-value=0.0097 Score=69.40 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=173.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcc--hh
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDN--KG 431 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~--k~ 431 (661)
..+..+++.+...+...+..|+..|..+...+... .....+++..|.+.+...... +.|+.++..|+..... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 34556777777656666778888888876533211 111236778888888775433 8899999999864322 11
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccC-CchhhhhhhcCCcHHHHHhhhcC-CHHHHHHHHHHHHHhhccc
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVI-DENKVTIGASGAIPPLVTLLSEG-TQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~ 509 (661)
.-.--+.++.++..+.+....++..|..++..+... +++.. ...+|.|+..+.+. .=+.+..|+.+|..|+...
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 111225678888877777778888777666665432 22111 45689999999766 4688899999999999765
Q ss_pred CchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhc
Q 006099 510 GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCA 589 (661)
Q Consensus 510 ~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~ 589 (661)
.......-..+||.+-..+-+..+++.+.|..++..+|..-+++.. ...+|.|++.+.+++. ...++..|.....
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf 240 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCee
Confidence 3332233357889999999888999999999999988874443321 2468999999986532 3444444444332
Q ss_pred CCH---HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHhhH
Q 006099 590 GDQ---QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 590 ~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
-.. ..... ++|.|..-+...+...+++++-++.||++.-
T Consensus 241 v~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 241 VAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp CSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred EeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 111 11111 3666777777778889999999999998753
No 158
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.62 E-value=0.00098 Score=54.24 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=38.4
Q ss_pred cCcCCcccccC-CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 263 RCPISLELMKD-PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 263 ~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.|++|.-+... ..++||+|.||..|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888766653 34689999999999999998888999999988764
No 159
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.58 E-value=0.015 Score=62.26 Aligned_cols=242 Identities=14% Similarity=0.063 Sum_probs=156.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHh--CCHHHHHHhhCC-------CC---hHHHHHHHHHHHh
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEA--GAIPLLVGLLST-------PD---SRTQEHAVTALLN 422 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~s-------~~---~~i~~~A~~~L~n 422 (661)
..+.|+..|.+..|++|.-|+-.|+.+.+............ ...-.|+-+|.- +| ..+|+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67889999999999999999999999876543210000111 223333333311 12 4689999999998
Q ss_pred ccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhh-hcCCcHHHHHhhhcCCHHHHHHHHHH
Q 006099 423 LSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIG-ASGAIPPLVTLLSEGTQRGKKDAATA 501 (661)
Q Consensus 423 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~a 501 (661)
+ .+-+.. ..++..++..+....++++.-+.-.|-++ +..+. =.++++.++.-|.+.+.+++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 652222 23344444444667899999999888888 11111 23677888888899999999999999
Q ss_pred HHHhhcccCchHHHHHcCChHHHHhcccC-CC-ccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHH
Q 006099 502 LFNLCIYQGNKGKAVRAGVVPTLMHLLTE-PG-GGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNREN 579 (661)
Q Consensus 502 L~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~-~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~ 579 (661)
|.-++ .++.... ++..+-+.|.+ ++ ..-....+.+|+.|+..+.. .-.....+|.|..++++.-+.+|..
T Consensus 323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99998 3322222 23344444443 22 22345567788888877631 1112367999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHH-HHhhhcCChHHHHHHHHHHH
Q 006099 580 AAAVLVHLCAGDQQYLAEAKELGVMGPL-VDLAQNGTDRGKRKAAQLLE 627 (661)
Q Consensus 580 A~~~L~~L~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~k~~A~~lL~ 627 (661)
++.+|..+. ... +++.+ ..++-..++.+.+.+..+-+
T Consensus 395 VL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998877 222 22222 24455667777777766654
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.12 Score=49.91 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=151.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH-HHhCCHHHHHHhh-------CCCC--hH---HHHHHHHHHH
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAI-AEAGAIPLLVGLL-------STPD--SR---TQEHAVTALL 421 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL-------~s~~--~~---i~~~A~~~L~ 421 (661)
.+..++..|.+ ++.+..|+.+|..--...++-.-.+ -..|.+..|++=+ ..+. .. -.-+|+..|-
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 45556666654 4457777777665332222222222 2346666665422 2221 11 1245566666
Q ss_pred hccCCCcchhHhhhCCChHHHHHHHccCC-----HHHHHHHHHHHHHcccCCc--hhhhhhhcCCcHHHHHhhhcCCHHH
Q 006099 422 NLSICEDNKGSIVSSGAVPSIVHVLRIGS-----MEARENAAATLFSLSVIDE--NKVTIGASGAIPPLVTLLSEGTQRG 494 (661)
Q Consensus 422 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~ 494 (661)
-++.+++.|..++.+...--|..+|+..+ +-+|-.+.++++.|...++ ....+.+.+.||..++.+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 67889999999999998888888887653 3578888999999987654 4556677899999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHH-------H-cCChHHHHhcc-cCCCccHHHHHHHHHHHhcCChhhHHHHHh-------
Q 006099 495 KKDAATALFNLCIYQGNKGKAV-------R-AGVVPTLMHLL-TEPGGGMVDEALAILAILSSHPEGKAAIGA------- 558 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~~~~~iv-------~-~g~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~~~~~~i~~------- 558 (661)
+.-|..++..+..++.+-..+. . ..++..++.-+ ..+++.+.++.+++-..|+.++..+..+..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 9999999998877765543222 1 12333344433 458899999999999999999999988764
Q ss_pred CCChHHHHHHhhCCCHHHHHHHHHHHHHH
Q 006099 559 AEAVPVLVEVIGNGSPRNRENAAAVLVHL 587 (661)
Q Consensus 559 ~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L 587 (661)
.|.+.. +++ +++.++..-...+.|+
T Consensus 242 d~tf~~---~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQ---VLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHH---HHT-SCHHHHHHHHHHHHHS
T ss_pred ChHHHH---HHh-cCHHHHHHHHHHHHhc
Confidence 233322 232 5677777766666665
No 161
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.20 E-value=0.00092 Score=67.18 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=37.4
Q ss_pred CccCcCCcccccC----Cee----cCCCccccHHHHHHHHHhCC----------CCCCCCCCCCc
Q 006099 261 DFRCPISLELMKD----PVI----VSTGQTYERSCIEKWLEAGH----------RTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~d----Pv~----~~cg~t~~r~~I~~w~~~~~----------~~cP~~~~~l~ 307 (661)
.-.|+||...+.+ |-. ..|||.|...|+.+|+.... .+||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4569999998876 422 36999999999999998421 46999999876
No 162
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.89 E-value=0.19 Score=49.44 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=120.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCC-HHHHHHhhCCCChHHHHHHHHHHHhccC---CCcchhH
Q 006099 357 EILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGA-IPLLVGLLSTPDSRTQEHAVTALLNLSI---CEDNKGS 432 (661)
Q Consensus 357 ~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~-i~~Lv~lL~s~~~~i~~~A~~~L~nLs~---~~~~k~~ 432 (661)
+.+...|.+.|+..+.+|+..|......++. ..+...+. ++.+.--+.+.+..+...++.+|..+.. +.+.+-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3567777788999999999998887654432 22222222 2222222336688888888777776632 1111111
Q ss_pred hh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc
Q 006099 433 IV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN 511 (661)
Q Consensus 433 i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 511 (661)
-. ..-.+|.|+.-+.+....+|+.+-.++..+... ......++.+++-+++.+.+.+..++..+..+....+.
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 134678888888777788888888877766532 11224567788888888999999999998888665444
Q ss_pred hHHHHHcCCh---HHHHhcccCCCccHHHHHHHHHHHhc
Q 006099 512 KGKAVRAGVV---PTLMHLLTEPGGGMVDEALAILAILS 547 (661)
Q Consensus 512 ~~~iv~~g~v---~~Lv~lL~~~~~~~~~~al~~L~~L~ 547 (661)
. ...++ +.+..++.+.+..+++.|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 24578 99999999999999999999987544
No 163
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.69 E-value=0.15 Score=60.29 Aligned_cols=253 Identities=13% Similarity=0.112 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC------CCChHHHHHHHHHHHhccCCCcchhHhhhC-----C
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS------TPDSRTQEHAVTALLNLSICEDNKGSIVSS-----G 437 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~-----g 437 (661)
..+..|...|..++..... .+. .-.++.+...+. +.+...++.|+.+++.++.....+..-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4566777778888764331 111 112333334444 567788999999999997532111100010 2
Q ss_pred ChH----HHHHHHccC---CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 438 AVP----SIVHVLRIG---SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 438 ~i~----~Lv~lL~~~---~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
..+ .++..|.+. ++-+|..|++++..++..- ... .-...++.+++.|.+.+..++..|+.+|.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 222 233344555 7899999999999998642 111 123567888888888889999999999999987422
Q ss_pred ---------chHHHH--HcCChHHHHhcccCCC-----ccHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHHhh--
Q 006099 511 ---------NKGKAV--RAGVVPTLMHLLTEPG-----GGMVDEALAILAILSSH--PEGKAAIGAAEAVPVLVEVIG-- 570 (661)
Q Consensus 511 ---------~~~~iv--~~g~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~-- 570 (661)
.+..+. -..+++.|+.++.... ....+.++.+|..++.. ++... ... ..++.|...+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHH
Confidence 122222 1345666677775531 01224455555544321 11111 000 13344444443
Q ss_pred --C-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 571 --N-GSPRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 571 --~-~~~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
+ .++..+..+..+|..++.. +++... -....++|.+..++.+........+..++..+..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 2 3466677788888888765 322222 2233466777777776655555556666655543
No 164
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.37 Score=47.80 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=123.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhccCCCc---chhHhh--hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc---
Q 006099 398 IPLLVGLLSTPDSRTQEHAVTALLNLSICED---NKGSIV--SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--- 469 (661)
Q Consensus 398 i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~---~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--- 469 (661)
+| |-.-|.+.+...|..|+..|..+..... ...... -....+.+-..+.+.+..+...++.++..+...-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5577889999999999998887643211 111111 23345666778888889999999998887764311
Q ss_pred ---hhhhhhhcCCcHHHHHh-hhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHH
Q 006099 470 ---NKVTIGASGAIPPLVTL-LSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAI 545 (661)
Q Consensus 470 ---~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~ 545 (661)
.........+++.|++- +.+....++..|..++..++........ +++.++..+.+.++.++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11122234667888865 6777788888888888777654332222 24567778888899999999988886
Q ss_pred hcCCh--h--hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH
Q 006099 546 LSSHP--E--GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 546 L~~~~--~--~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~ 592 (661)
+...- . .....+. .+++.+..++.+.++.+|..|..++..+...-+
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 64321 0 0111111 245567778889999999999999998876543
No 165
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.34 E-value=0.16 Score=51.29 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=148.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH----HHHHh-CCHHHHHHhhCCCChHHHHHHHHHHHhccCCCc
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRV----AIAEA-GAIPLLVGLLSTPDSRTQEHAVTALLNLSICED 428 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~----~i~~~-g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~ 428 (661)
+.+..|+..|..-+.+.+..+.....++.+.....+. .+... ..+..|+.... ++++--.+...|.....++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHH
Confidence 5788899999999999999999999888776554332 22221 23334443333 44555566777888888877
Q ss_pred chhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--hhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHH
Q 006099 429 NKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--NKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFN 504 (661)
Q Consensus 429 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~n 504 (661)
....|...+.+..+......++-++...|..++-.|-..+. ....+... .++...-.+|.+++.-++..++..|..
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 77778888889999999999999999999999887755432 12222222 577788889999999999999999999
Q ss_pred hhcccCchHHHH----HcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 505 LCIYQGNKGKAV----RAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 505 L~~~~~~~~~iv----~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
|..+..|...|. +..-+..++.+|++.+..++-.|..++.-...+|.
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999988877555 34567888999999999999999999987776653
No 166
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.93 E-value=0.43 Score=46.15 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCC-----HHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHH
Q 006099 536 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGS-----PRNRENAAAVLVHLCAG-DQQYLAEAKELGVMGPLVD 609 (661)
Q Consensus 536 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ 609 (661)
+-.|+++|..+|++|+.|..++++...-.|..+|+..+ .-.|-.+.++++.|... +++....+.+.+++|..+.
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 45678888899999999999999998888999998654 34578889999998864 4467788899999999999
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhH
Q 006099 610 LAQNGTDRGKRKAAQLLERMSRFI 633 (661)
Q Consensus 610 ll~~~~~~~k~~A~~lL~~L~~~~ 633 (661)
++..|+.-.|.-|..++.-+-..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHhhccHHHHHHHHHHHHHHhccc
Confidence 999999999999999998776544
No 167
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.40 E-value=0.72 Score=54.46 Aligned_cols=218 Identities=10% Similarity=0.090 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHh-----CCHHH----HHHhhCCC---ChHHHHHHHHHHHhccCCCcchhH
Q 006099 365 SGSPEDQRSAAGEIRLLAKRNADNRVAIAEA-----GAIPL----LVGLLSTP---DSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~-----g~i~~----Lv~lL~s~---~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
+.+|..+..|+..++.++......... ... ...+. ++..|.++ ++.+|..|+++|+.++..- .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 567889999999999997532100000 000 12222 33334555 7899999999999998642 122
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc---------hhhhhhhc--CCcHHHHHhhhcCC---HH--HHH
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE---------NKVTIGAS--GAIPPLVTLLSEGT---QR--GKK 496 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~---------~~~~i~~~--g~i~~Lv~lL~~~~---~~--~~~ 496 (661)
.-...++.++..|.+.+..++..|+.+|.+++...+ .+..+... ..++.|+.++.... .. ...
T Consensus 493 -~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 493 -QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 134467778888887789999999999999886421 23333221 45556666666641 11 234
Q ss_pred HHHHHHHHhhcccCc-hHHHHHcCChHHHHhccc----C-CCccHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHH
Q 006099 497 DAATALFNLCIYQGN-KGKAVRAGVVPTLMHLLT----E-PGGGMVDEALAILAILSSH--PEGKAAIGAAEAVPVLVEV 568 (661)
Q Consensus 497 ~a~~aL~nL~~~~~~-~~~iv~~g~v~~Lv~lL~----~-~~~~~~~~al~~L~~L~~~--~~~~~~i~~~g~i~~Lv~l 568 (661)
.+..+|..++..-+. -.... ..+++.|+..+. + .+......++.+|..++.. ++....+. ..++|.+..+
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHH
Confidence 556666655432211 11111 123344444442 2 3445566677777766654 33333332 3467788888
Q ss_pred hhCCCHHHHHHHHHHHHHHh
Q 006099 569 IGNGSPRNRENAAAVLVHLC 588 (661)
Q Consensus 569 L~~~~~~~ke~A~~~L~~L~ 588 (661)
|........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 87654455555655555443
No 168
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.74 E-value=1.1 Score=44.98 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHhhcccCchHHHHH--cCChHHHHhcccCCCccHHHHHHHHHHHhcCChh---hHHHHHhCCChHHH
Q 006099 491 TQRGKKDAATALFNLCIYQGNKGKAVR--AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE---GKAAIGAAEAVPVL 565 (661)
Q Consensus 491 ~~~~~~~a~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~---~~~~i~~~g~i~~L 565 (661)
.+..+..++++++|+..++..+..+.. ..+++.+...+.+.+..++..+..++.|++..-. ..... ..++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHH
Confidence 456688999999999999888877664 2355566666656678888888888899986421 00110 1134445
Q ss_pred HHHhhC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHH
Q 006099 566 VEVIGN-GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLE 627 (661)
Q Consensus 566 v~lL~~-~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~ 627 (661)
..++.. .+++....++.+|.+|...+++....+...|+...+-.+... ...++.+.+..+|.
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 555543 567888899999999998877666666666776666666654 46777777776664
No 169
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.57 E-value=0.028 Score=46.78 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCccCcCCcc-cccCCee--cCCCccccHHHHHHHHH
Q 006099 260 DDFRCPISLE-LMKDPVI--VSTGQTYERSCIEKWLE 293 (661)
Q Consensus 260 ~~f~CpIc~~-~m~dPv~--~~cg~t~~r~~I~~w~~ 293 (661)
++..|+||.+ +..+||. +.|||+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 4789998 89999999999998443
No 170
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.51 E-value=1.5 Score=46.35 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=95.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhh
Q 006099 356 IEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVS 435 (661)
Q Consensus 356 i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~ 435 (661)
...++.. ..++...+.-|++-|....+..|+.... ++..++.+..+.|..+|.+|+..|..+|.+ ++-..
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k--- 100 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR--- 100 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH---
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh---
Confidence 4444443 3467889999999999999888876544 578899999999999999999999999988 44333
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHH
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFN 504 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 504 (661)
+.+.|+++|...++.-...+-.+|..|-..+. .+.+..|...+.++++.+++.++..|..
T Consensus 101 --iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 101 --VADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp --HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 46778999998876655555555555543322 2456667777777777788877776643
No 171
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.069 Score=54.59 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=49.7
Q ss_pred CccCcCCcccccCCee-cCCCcc--ccHHHHHHHHH-hCCCCCCCCCCCCcCCCCccchhhhhhHH
Q 006099 261 DFRCPISLELMKDPVI-VSTGQT--YERSCIEKWLE-AGHRTCPKTQQTLTSTAVTPNYVLRSLIA 322 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~-~~cg~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~~n~~l~~~i~ 322 (661)
.+.||++...|..|+. ..|.|. |+...+..... .+...||+|.+.+....+..+..+..++.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 4899999999999997 589997 77766665544 46689999999998888888877766554
No 172
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.03 E-value=0.16 Score=49.64 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=89.8
Q ss_pred ChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHc
Q 006099 385 NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSL 464 (661)
Q Consensus 385 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L 464 (661)
++..|......=....|..++++++..++..++..| . .+.|..++++.+..+|..++..+
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~~l--- 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVADRL--- 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHHHS---
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHHhC---
Confidence 444455555433345566777888899988877532 1 13466667777888888777632
Q ss_pred ccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHH
Q 006099 465 SVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILA 544 (661)
Q Consensus 465 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~ 544 (661)
. .+.|..++++.+..++..++..+ . .+.+..++.+++..++..++..+.
T Consensus 123 ~--------------~~~L~~L~~D~d~~VR~~aA~~l---~--------------~~~l~~l~~D~d~~VR~~aa~~l~ 171 (244)
T 1lrv_A 123 P--------------LEQLEQMAADRDYLVRAYVVQRI---P--------------PGRLFRFMRDEDRQVRKLVAKRLP 171 (244)
T ss_dssp C--------------TGGGGGGTTCSSHHHHHHHHHHS---C--------------GGGGGGTTTCSCHHHHHHHHHHSC
T ss_pred C--------------HHHHHHHHcCCCHHHHHHHHHhc---C--------------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 1 12344555666667766666521 0 112233334444444444443210
Q ss_pred -----HhcCCh--hhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChH
Q 006099 545 -----ILSSHP--EGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDR 617 (661)
Q Consensus 545 -----~L~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 617 (661)
.+...+ ..|..++..-..+.|..++.+.++.+|..++..+. .+.|..+ .+.+..
T Consensus 172 ~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~ 232 (244)
T 1lrv_A 172 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPE 232 (244)
T ss_dssp GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHH
Confidence 011111 11111111113355666666666777766665531 2455555 667777
Q ss_pred HHHHHHHHH
Q 006099 618 GKRKAAQLL 626 (661)
Q Consensus 618 ~k~~A~~lL 626 (661)
+++.|...|
T Consensus 233 VR~aa~~~L 241 (244)
T 1lrv_A 233 VRLAIAGRL 241 (244)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHh
Confidence 777766443
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.92 E-value=0.75 Score=46.29 Aligned_cols=187 Identities=15% Similarity=0.118 Sum_probs=108.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHH----HHHHhhCC-CChHHHHHHHHHHHhccCCCcc
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIP----LLVGLLST-PDSRTQEHAVTALLNLSICEDN 429 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~----~Lv~lL~s-~~~~i~~~A~~~L~nLs~~~~~ 429 (661)
.+..+.+.+ +=..+.+.-++..+|.+.. ++.....+.+.+.-. .++..+.+ ..+..+.-+++++.|+-.+...
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 445555554 2223456667777777664 555555554433323 33344433 3566788899999999988878
Q ss_pred hhHhhhC--CChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhh-hhcCCcHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006099 430 KGSIVSS--GAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTI-GASGAIPPLVTLLSE-GTQRGKKDAATALFNL 505 (661)
Q Consensus 430 k~~i~~~--g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL 505 (661)
+..+... .+++.+...+.+.+..++..++.+++|++......... .....+..+..++.. .+.+....++.+|.+|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 7777642 23444444444557889999999999998652110000 011234444455543 4788999999999999
Q ss_pred hcccCchHHHHH-cCChHHHHhcccCCCccHHHHHHHHH
Q 006099 506 CIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAIL 543 (661)
Q Consensus 506 ~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~~~~~al~~L 543 (661)
...+.....+.+ .|+-..+-+......+.-+..|+..+
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 987655555554 34444444444432333333344333
No 174
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.81 E-value=1.6 Score=42.06 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=94.0
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC----C-------ChHHHHHHHHHHHhcc
Q 006099 358 ILLCKLTSGS-PEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST----P-------DSRTQEHAVTALLNLS 424 (661)
Q Consensus 358 ~Lv~~L~s~~-~~~~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s----~-------~~~i~~~A~~~L~nLs 424 (661)
..++.|++.. .+.-.+-+..|+..-+.++ ..-..+ ..+++..|+.+|.. + +...+..++.+|..+.
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 3455565532 2222233445544333333 333344 46778888887743 1 3566778889998887
Q ss_pred CCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--h-hhhhh----------hcCCcHHHHHhhhcC
Q 006099 425 ICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTIG----------ASGAIPPLVTLLSEG 490 (661)
Q Consensus 425 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~ 490 (661)
.+..+...++ ..+++..|+..|.+.++.++..++.+|..+|..++ + ...+. +..-+.++++.+++.
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 7665555555 67789999999988899999999999988887764 4 44332 224677788888754
Q ss_pred -CHHHHHHHHHHHHHhhcccC
Q 006099 491 -TQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 491 -~~~~~~~a~~aL~nL~~~~~ 510 (661)
+.+.+..++..+-.+....+
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 44554444444444444444
No 175
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.73 E-value=0.081 Score=51.38 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=37.8
Q ss_pred ccCcCCcccccCCeec-CCCccccHHHHHHHHHh-CCCCCCCCCCCCcCC
Q 006099 262 FRCPISLELMKDPVIV-STGQTYERSCIEKWLEA-GHRTCPKTQQTLTST 309 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~-~cg~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~ 309 (661)
..|.||.++..--+.- .|++.|...|+.+|+.. ++..||.|+...+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4599999887744443 49999999999999974 356999999887644
No 176
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.33 E-value=0.82 Score=49.23 Aligned_cols=185 Identities=17% Similarity=0.130 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhh-hCCChHHHHHHHc
Q 006099 369 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIV-SSGAVPSIVHVLR 447 (661)
Q Consensus 369 ~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~ 447 (661)
.+++.|++.|..+ .+-+.. ..++..|+..+.....+++..++-.|..+ ++.+. -.++++.++.-|.
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcC
Confidence 5788888888888 543333 34556666666778899999999999888 12221 3556777788888
Q ss_pred cCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCC--HHHHHHHHHHHHHhhcccCchHHHHHcCChHHHH
Q 006099 448 IGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGT--QRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLM 525 (661)
Q Consensus 448 ~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv 525 (661)
+.+.+++..||.+|.-++ .++.. ...+..|.+.|.+-+ ..........|..|+..+.+. ......||.|.
T Consensus 310 D~DDDVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~ 381 (800)
T 3oc3_A 310 SPDEDIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIF 381 (800)
T ss_dssp CSSHHHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTG
T ss_pred CcccHHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHH
Confidence 889999999999999988 11110 122333334444322 122233455566666555321 11237899999
Q ss_pred hcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HhhCCCHHHHHHHHHHH
Q 006099 526 HLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVE-VIGNGSPRNRENAAAVL 584 (661)
Q Consensus 526 ~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~ke~A~~~L 584 (661)
++|.++-..++..++.+|..+.. ..++..+.+ +|-..++.++..+..+-
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999987771 112333333 33355666666665544
No 177
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.28 E-value=0.86 Score=44.79 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=114.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhcCCHHHHHHHHHHHHHhhcc---cCchHHH
Q 006099 441 SIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEGTQRGKKDAATALFNLCIY---QGNKGKA 515 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---~~~~~~i 515 (661)
.+...|.+.+..-+..++..|...... +...+... ..++.+.-.+.+.+..+...++.+|..+... .+.+..-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 445555555666566666555543221 11121111 1233333333466777777777776665321 1111111
Q ss_pred HH-cCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHH
Q 006099 516 VR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQY 594 (661)
Q Consensus 516 v~-~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~ 594 (661)
.+ .-.+|.|+.-+.+....+++.+-.+|..++..- --..+++.+++-+++.+.+.|+.++..+..+-...+-.
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 236788999998888888888888877665311 11125667777788899999999998888875432111
Q ss_pred HHHHHHcCCH---HHHHHhhhcCChHHHHHHHHHHHHHHhhH-HHHHHHH
Q 006099 595 LAEAKELGVM---GPLVDLAQNGTDRGKRKAAQLLERMSRFI-EQQKQAQ 640 (661)
Q Consensus 595 ~~~~~~~g~i---~~L~~ll~~~~~~~k~~A~~lL~~L~~~~-~~~~~~l 640 (661)
....+ +.+..++.+.+..+|..|..++..+.... +...+.+
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 23467 99999999999999999999998777554 3333333
No 178
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.17 E-value=0.1 Score=50.97 Aligned_cols=134 Identities=15% Similarity=0.109 Sum_probs=68.7
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcC
Q 006099 399 PLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASG 478 (661)
Q Consensus 399 ~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g 478 (661)
+.|..++++++..++..++.. +. .+.+..++++.+..+|..++.. +.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~~---l~------------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQR---IP------------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHHH---SC-------------
T ss_pred HHHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHHh---cC-------------
Confidence 567778888899998887663 21 1224444556677777766652 11
Q ss_pred CcHHHHHhhhcCCHHHHHHHHHHHH-----HhhcccCc--hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChh
Q 006099 479 AIPPLVTLLSEGTQRGKKDAATALF-----NLCIYQGN--KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE 551 (661)
Q Consensus 479 ~i~~Lv~lL~~~~~~~~~~a~~aL~-----nL~~~~~~--~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~ 551 (661)
.+.+..++++.+..++..++..+. .+...++. +..++..-..+.|..++.+++..++..+...+
T Consensus 148 -~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l-------- 218 (244)
T 1lrv_A 148 -PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA-------- 218 (244)
T ss_dssp -GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS--------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC--------
Confidence 122333444555555555544310 00011110 11111111234455555555555555554432
Q ss_pred hHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHH
Q 006099 552 GKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVL 584 (661)
Q Consensus 552 ~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L 584 (661)
..+.|..+ ++.++.+++.|...|
T Consensus 219 ---------~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 219 ---------SLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ---------CHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred ---------CHHHHHHc-cCCCHHHHHHHHHHh
Confidence 24556555 778899998886543
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.04 E-value=4.1 Score=42.39 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=109.0
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC-----------CChHHHHHHHHHHHhc
Q 006099 357 EILLCKLTSGS-PEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNL 423 (661)
Q Consensus 357 ~~Lv~~L~s~~-~~~~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-----------~~~~i~~~A~~~L~nL 423 (661)
...++.|.++. .....+.+..|+.-.+.++ ..-..++ .+++..|+.+|.. .+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 44566666543 2223345666665444333 3334444 6678888888741 2457788889999988
Q ss_pred cCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--h-hhhhh----------hcCCcHHHHHhhhc
Q 006099 424 SICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTIG----------ASGAIPPLVTLLSE 489 (661)
Q Consensus 424 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~lL~~ 489 (661)
..+..+...++ ...++..|+..|.+.++.++..+..+|..+|..++ + ...+. +..-+..++..|++
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 77665555555 67889999999999999999999999999887764 2 33332 23568889999987
Q ss_pred C-CHHHHHHHHHHHHHhhcccCc---hH----HHHHcCChHHHHhcccC
Q 006099 490 G-TQRGKKDAATALFNLCIYQGN---KG----KAVRAGVVPTLMHLLTE 530 (661)
Q Consensus 490 ~-~~~~~~~a~~aL~nL~~~~~~---~~----~iv~~g~v~~Lv~lL~~ 530 (661)
+ +.+.+..++..+-.+....++ |. .+...|..+.+-. |..
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 4 555555444444444444443 22 3445666555544 554
No 180
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.94 E-value=0.12 Score=52.61 Aligned_cols=63 Identities=11% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCccCcCCcccccCCee-cCCCcc--ccHHHHHHHHH-hCCCCCCCCCCCCcCCCCccchhhhhhHH
Q 006099 260 DDFRCPISLELMKDPVI-VSTGQT--YERSCIEKWLE-AGHRTCPKTQQTLTSTAVTPNYVLRSLIA 322 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~-~~cg~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~~n~~l~~~i~ 322 (661)
-.+.||++...|..|+. ..|.|. |+...+..... .+...||.|++.+....+..+..+..++.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 35899999999999997 589987 87777666655 46689999999998888888777766654
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.86 E-value=4.2 Score=47.85 Aligned_cols=173 Identities=12% Similarity=0.053 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh---h--cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHH
Q 006099 449 GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL---S--EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 523 (661)
Q Consensus 449 ~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~ 523 (661)
.+...++.++.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456788999999999875532111 13344444443 2 2378899999999999886533222111 134555
Q ss_pred HHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHhhCC--CHHHHHHHHHHHHHHhcCCH-HH-HHH
Q 006099 524 LMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGNG--SPRNRENAAAVLVHLCAGDQ-QY-LAE 597 (661)
Q Consensus 524 Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~ke~A~~~L~~L~~~~~-~~-~~~ 597 (661)
|+..| + +.++..|+.++.+++. +.+..+.- ...+..+..++..+ +...+..+..++..+...-+ .. ...
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 2 7789999999999994 33333332 13555666777763 57788888888888876421 12 221
Q ss_pred HHH--cCCHHHHHHhhhcC--ChHHHHHHHHHHHHHHh
Q 006099 598 AKE--LGVMGPLVDLAQNG--TDRGKRKAAQLLERMSR 631 (661)
Q Consensus 598 ~~~--~g~i~~L~~ll~~~--~~~~k~~A~~lL~~L~~ 631 (661)
+.. .-++..+..++... ++..+..+...|..|..
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 111 11233333333333 44455666666666654
No 182
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.40 E-value=5.4 Score=41.49 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=105.6
Q ss_pred HHHHHHHccCCHHH-HHHHHHHHHHHHhhCh-hhHHHHHHhCCHHHHHHhhCC-----------CChHHHHHHHHHHHhc
Q 006099 357 EILLCKLTSGSPED-QRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLST-----------PDSRTQEHAVTALLNL 423 (661)
Q Consensus 357 ~~Lv~~L~s~~~~~-~~~Al~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-----------~~~~i~~~A~~~L~nL 423 (661)
...++.|.+..... -.+.+..|+...+.++ ..-..+. .+++..|+.+|.. .+...+..++.+|..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 34566666543222 1233455554333333 3333343 5778888887742 1456778888999888
Q ss_pred cCCCcchhHhh-hCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCc--h-hhhhh----------hcCCcHHHHHhhhc
Q 006099 424 SICEDNKGSIV-SSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDE--N-KVTIG----------ASGAIPPLVTLLSE 489 (661)
Q Consensus 424 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~--~-~~~i~----------~~g~i~~Lv~lL~~ 489 (661)
..+..+...++ ..+++..|+..|.+.++.++..++.+|..+|..++ + ...+. +..-+.+|++.+.+
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 77655555555 67789999999988889999999999988888764 3 33332 22567788888875
Q ss_pred C-CHHHHHHHHHHHHHhhcccCc---h----HHHHHcCChHHHHhcccC-CCccH
Q 006099 490 G-TQRGKKDAATALFNLCIYQGN---K----GKAVRAGVVPTLMHLLTE-PGGGM 535 (661)
Q Consensus 490 ~-~~~~~~~a~~aL~nL~~~~~~---~----~~iv~~g~v~~Lv~lL~~-~~~~~ 535 (661)
+ +.+.+..++..+-.|....++ | ..+...|..+.+ .-|.. .++.+
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM 219 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhH
Confidence 4 445554444444444444443 2 234455655554 44444 44433
No 183
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.36 E-value=6.9 Score=45.95 Aligned_cols=213 Identities=15% Similarity=0.030 Sum_probs=120.1
Q ss_pred CChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHH---c--cCCHHHHHHHHHHHHHcccCC-chhhhhhhcCCcH
Q 006099 408 PDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVL---R--IGSMEARENAAATLFSLSVID-ENKVTIGASGAIP 481 (661)
Q Consensus 408 ~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~ 481 (661)
.+...++.|+.++..++....... ...++.++.++ . +.++.++..+++++..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567788999999999875421111 13344455444 3 237889999999999987542 111111 14556
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcccCchHHHH--HcCChHHHHhcccCC--CccHHHHHHHHHHHhcCC--hhhHHH
Q 006099 482 PLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAV--RAGVVPTLMHLLTEP--GGGMVDEALAILAILSSH--PEGKAA 555 (661)
Q Consensus 482 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~iv--~~g~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~--~~~~~~ 555 (661)
.|+..+ + +.++..|+.++.+++..- +..+. -.+++..+..++..+ +...+..++.+++.++.. ++....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 2 678899999999999543 22332 245666777777663 456677777777766542 233322
Q ss_pred HHhCCChHHHHH----HhhCC--CHHHHHHHHHHHHHHhcC-----CH--H--------HHHHHHHcCCHHHHHHhhhc-
Q 006099 556 IGAAEAVPVLVE----VIGNG--SPRNRENAAAVLVHLCAG-----DQ--Q--------YLAEAKELGVMGPLVDLAQN- 613 (661)
Q Consensus 556 i~~~g~i~~Lv~----lL~~~--~~~~ke~A~~~L~~L~~~-----~~--~--------~~~~~~~~g~i~~L~~ll~~- 613 (661)
... ..++.++. +++.. ++..+......+..|+.. .. . ....-....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence 222 23344443 33332 343445455555444321 10 0 00011123467777777754
Q ss_pred -CChHHHHHHHHHHHHHHhh
Q 006099 614 -GTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 614 -~~~~~k~~A~~lL~~L~~~ 632 (661)
.+..+.+.+.++++.+...
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 3678999999999987654
No 184
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.02 E-value=1.7 Score=41.87 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=94.5
Q ss_pred CCChHHHHHHHcc----C-------CHHHHHHHHHHHHHcccCCchhhhhhhc-CCcHHHHHhhhcCCHHHHHHHHHHHH
Q 006099 436 SGAVPSIVHVLRI----G-------SMEARENAAATLFSLSVIDENKVTIGAS-GAIPPLVTLLSEGTQRGKKDAATALF 503 (661)
Q Consensus 436 ~g~i~~Lv~lL~~----~-------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~ 503 (661)
.+|+..|+.+|.. + +......++.+|..+.....+...+... +++..|+..|.+..+.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5677777777642 1 2355677888998888777666666554 88999999999889999999999999
Q ss_pred HhhcccC--c-hHHHH----------HcCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhh-------HHHHHhCCCh
Q 006099 504 NLCIYQG--N-KGKAV----------RAGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEG-------KAAIGAAEAV 562 (661)
Q Consensus 504 nL~~~~~--~-~~~iv----------~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~-------~~~i~~~g~i 562 (661)
.+|..++ + ...++ +..-+..++..|.. .+.+.+..++..+..+...++. |.++...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8888765 4 43332 23367778888864 4556677777777777665532 3445555544
Q ss_pred HHHHHHhh-CCCHHHH
Q 006099 563 PVLVEVIG-NGSPRNR 577 (661)
Q Consensus 563 ~~Lv~lL~-~~~~~~k 577 (661)
.+++-++ ..++...
T Consensus 202 -~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 202 -QVLQELREIENEDMK 216 (233)
T ss_dssp -HHHHHHHHCCCHHHH
T ss_pred -HHHHHHhccCCHHHH
Confidence 4444444 3455543
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.50 E-value=6 Score=46.38 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=88.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh---CCCChHHHHHHHHHHHhccCC-CcchhHhhhCCCh
Q 006099 364 TSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL---STPDSRTQEHAVTALLNLSIC-EDNKGSIVSSGAV 439 (661)
Q Consensus 364 ~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~s~~~~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i 439 (661)
.+.+|..+..++..++.++..-.... ...++.++..+ ..+++.++..++++++.++.. ..+... -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHH
Confidence 45688899999999999986433211 12344444433 335788999999999998753 222222 35788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhc--CCcHHHHHhhhcC--CHHHHHHHHHHHHHhhccc
Q 006099 440 PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGAS--GAIPPLVTLLSEG--TQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 440 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~ 509 (661)
+.|+..|.+ +.++..|+.++.+++.. .+..+... ..+..|..++..+ +...+..+..++..++...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888855 78899999999999843 23333211 3444445555543 4677788888888887543
No 186
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.34 E-value=12 Score=37.58 Aligned_cols=157 Identities=19% Similarity=0.088 Sum_probs=120.2
Q ss_pred hhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCc-h---HHHHHcCChHHHHhcccC-CCccHHHHHHHHHHHhc
Q 006099 473 TIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGN-K---GKAVRAGVVPTLMHLLTE-PGGGMVDEALAILAILS 547 (661)
Q Consensus 473 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~---~~iv~~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~ 547 (661)
.+...+.+..|+..|..=+-+.++++..+..++.....+ + ...+.. -...|.-++.. .++++.-.+-.+|....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 345568888999999888999999999999988765432 2 122222 22333333322 46677777888888888
Q ss_pred CChhhHHHHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHhhhcCChHHHHHHHH
Q 006099 548 SHPEGKAAIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELG---VMGPLVDLAQNGTDRGKRKAAQ 624 (661)
Q Consensus 548 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~~k~~A~~ 624 (661)
.++.....+...+.+-.+.+.++.++-++-..|..++-.|-......+...+..+ +....-.++.+++.-+|+.+..
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9998888888888888999999999999999999999988777666666666544 5777888999999999999999
Q ss_pred HHHHHH
Q 006099 625 LLERMS 630 (661)
Q Consensus 625 lL~~L~ 630 (661)
+|..|-
T Consensus 232 LLgelL 237 (341)
T 1upk_A 232 LLGELL 237 (341)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999774
No 187
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.86 E-value=14 Score=38.29 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=96.1
Q ss_pred cCCcHHHHHhhhc-----------CCHHHHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccCCCccHHHHHHHHHH
Q 006099 477 SGAIPPLVTLLSE-----------GTQRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILA 544 (661)
Q Consensus 477 ~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~~~~~al~~L~ 544 (661)
.+++..|+.+|.. .+......++.+|..+..+..+...++. ..++..|+..|.+..+.++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4456666666641 1335566778888888877777666664 678999999999899999999999999
Q ss_pred HhcCChh--h-HHHHHh----------CCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCH
Q 006099 545 ILSSHPE--G-KAAIGA----------AEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ------QYLAEAKELGVM 604 (661)
Q Consensus 545 ~L~~~~~--~-~~~i~~----------~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~------~~~~~~~~~g~i 604 (661)
.+|..++ + ...+.+ ..-+..++..|+. .+...+..++..+-.+....+ ..+..+...|+.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998764 3 443332 2457778888876 455666666666656665543 233555677877
Q ss_pred HHHHHhhhcCChHHH
Q 006099 605 GPLVDLAQNGTDRGK 619 (661)
Q Consensus 605 ~~L~~ll~~~~~~~k 619 (661)
+.+-.+-..+++...
T Consensus 268 ~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 268 QVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHTTSCCHHHH
T ss_pred HHHHHHhcCCChhHH
Confidence 777765444454443
No 188
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.15 E-value=14 Score=43.82 Aligned_cols=239 Identities=14% Similarity=0.059 Sum_probs=128.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHH----HhC---CHHHHHHhhCCCChHHHHHHHHHHHhccC-C
Q 006099 355 KIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIA----EAG---AIPLLVGLLSTPDSRTQEHAVTALLNLSI-C 426 (661)
Q Consensus 355 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~----~~g---~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~-~ 426 (661)
..-.|++.|..-+.+.-.+....+. ..+..|.++. ..| ++..+.+++.++.....+ |+.+|..+.. -
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC
Confidence 3444556665555443333333322 2233444443 345 455556666665443333 3333322211 1
Q ss_pred CcchhHhhhCCChHHHHHHHcc----CCHHHHHHHHHHHHHccc----CCchhhhhhhcCCcHHHHHhh----hcCCHHH
Q 006099 427 EDNKGSIVSSGAVPSIVHVLRI----GSMEARENAAATLFSLSV----IDENKVTIGASGAIPPLVTLL----SEGTQRG 494 (661)
Q Consensus 427 ~~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~ 494 (661)
..+. ..+..+..++.+ .++.++..+.-++.+|.. .... .....++.+.+.+ ..++..-
T Consensus 387 ~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~ 456 (1056)
T 1lsh_A 387 QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEE 456 (1056)
T ss_dssp CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHH
T ss_pred CCCH------HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHH
Confidence 1222 234556666654 355677766666666542 2111 1112345555444 5667777
Q ss_pred HHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC-----C--CccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 006099 495 KKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE-----P--GGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVE 567 (661)
Q Consensus 495 ~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----~--~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 567 (661)
+..++.+|.|+... ..++.|.+++.. . ...++..|+.+|..++..... -+-+.++.
T Consensus 457 ~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~ 519 (1056)
T 1lsh_A 457 IVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLP 519 (1056)
T ss_dssp HHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHH
T ss_pred HHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHH
Confidence 88899999999763 356677777742 1 235667788888888743211 12345667
Q ss_pred Hhh--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHHHHHhhHHH
Q 006099 568 VIG--NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSRFIEQ 635 (661)
Q Consensus 568 lL~--~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~L~~~~~~ 635 (661)
+.. ..++++|..|+.+|..-+ -+.. .+..+...+.. .+..+..-....|+++.+....
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HhcCCCCChHHHHHHHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 774 356888988888776432 2221 34444455544 4667777777777777765533
No 189
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.47 E-value=8.2 Score=45.19 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=103.3
Q ss_pred ccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh---hcCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHH
Q 006099 447 RIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL---SEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPT 523 (661)
Q Consensus 447 ~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~ 523 (661)
.+.+...++.++.++..++..-.. .....++.++..+ .++++.++..+++++..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 344778899999999998865221 0123344555544 23467888999999998886422222333 368888
Q ss_pred HHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHhhC--CCHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 006099 524 LMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--AEAVPVLVEVIGN--GSPRNRENAAAVLVHLCAGDQ-QYLAEA 598 (661)
Q Consensus 524 Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~--~~~~~ke~A~~~L~~L~~~~~-~~~~~~ 598 (661)
|+..|.+ +.++..|+.+|.+++.. .+..+.- ...+..|..++.. .+...+..+..++..+....+ +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999842 2222221 1233344455554 256788888888888875442 333222
Q ss_pred HHcCCHHHHHHhh----hcC-ChHHHHHHHHHHHHHH
Q 006099 599 KELGVMGPLVDLA----QNG-TDRGKRKAAQLLERMS 630 (661)
Q Consensus 599 ~~~g~i~~L~~ll----~~~-~~~~k~~A~~lL~~L~ 630 (661)
.+ .+++.+...+ .++ ++..+.....++..|.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 22 2344444333 232 5666665555555553
No 190
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.73 E-value=22 Score=36.86 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHH-cCChHHHHhcccCCCccHHHHHHHHHHHhcCChh--h-HHHHH----------
Q 006099 492 QRGKKDAATALFNLCIYQGNKGKAVR-AGVVPTLMHLLTEPGGGMVDEALAILAILSSHPE--G-KAAIG---------- 557 (661)
Q Consensus 492 ~~~~~~a~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~--~-~~~i~---------- 557 (661)
......++.+|..+..+..+...++. .+++..|+..|.++++.++..++.+|..+|..++ | ...+.
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 34556778888888877777666664 5788999999988888999999999999998764 5 33332
Q ss_pred hCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHhhhcCChHHHHH
Q 006099 558 AAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGDQ------QYLAEAKELGVMGPLVDLAQNGTDRGKRK 621 (661)
Q Consensus 558 ~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~~------~~~~~~~~~g~i~~L~~ll~~~~~~~k~~ 621 (661)
+..-+..+++.+.. .+...+..++..+-.|....+ .-+..+...|+.+.|-.+-..+++.....
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 22356678888864 445556555555555665544 23455567788777776665566655443
No 191
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.84 E-value=5.3 Score=42.28 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHH
Q 006099 489 EGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEV 568 (661)
Q Consensus 489 ~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~l 568 (661)
.|+...++.|+..|.....+-+.-. ..++..++++..+.+..++..|+.-|..+|.. +.... ++..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHH
Confidence 4568888888888887766544432 23566788899888888999999999999987 44333 45678899
Q ss_pred hhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHH
Q 006099 569 IGNGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLL 626 (661)
Q Consensus 569 L~~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL 626 (661)
|++.++......-..|..|...++. |.+..|..-+.++++.+|+++..-|
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 9988887777777788887776653 2345555555556777777766555
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.24 E-value=1.6 Score=34.46 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=36.7
Q ss_pred CccCcCCccccc-----CCeec--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMK-----DPVIV--STGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~-----dPv~~--~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.-.|.||.+-.- +|.+. .|+...||.|++--..+++..||.|+.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999987532 33332 578899999999888899999999988775
No 193
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.90 E-value=19 Score=42.40 Aligned_cols=216 Identities=12% Similarity=0.037 Sum_probs=128.6
Q ss_pred HHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCC---ChHHHHHHHHHHHhccC--CC
Q 006099 355 KIEILLCKLTS--GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP---DSRTQEHAVTALLNLSI--CE 427 (661)
Q Consensus 355 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~---~~~i~~~A~~~L~nLs~--~~ 427 (661)
.+...++..-+ .+++.|.+|-..|..+-+ +++. ......+|.++ +..++..|+.+|.+... .+
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~a---------w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SSTG---------WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STTH---------HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-ChhH---------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 34444533333 368888898888888754 3432 34455666553 68889888888877543 22
Q ss_pred c----chhHhhhCCChHHHHHHHcc-----CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCH-HHHHH
Q 006099 428 D----NKGSIVSSGAVPSIVHVLRI-----GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQ-RGKKD 497 (661)
Q Consensus 428 ~----~k~~i~~~g~i~~Lv~lL~~-----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~ 497 (661)
+ .+..+ .. .++.++.. +..-++...+.++..+...... -...++++.|+.++..++. .....
T Consensus 77 e~~~~~~~~l-r~----~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~ 148 (980)
T 3ibv_A 77 ESNLLELQMI-RD----SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNF 148 (980)
T ss_dssp TTSHHHHHHH-HH----HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred hhhHHHHHHH-HH----HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHH
Confidence 2 22222 22 23333332 2456778888888777643210 0223778888888876544 34455
Q ss_pred HHHHHHHhhccc-------C----ch-----HHHHHc---CChHHHHhccc----CCCccHHHHHHHHHHHhcCChhhHH
Q 006099 498 AATALFNLCIYQ-------G----NK-----GKAVRA---GVVPTLMHLLT----EPGGGMVDEALAILAILSSHPEGKA 554 (661)
Q Consensus 498 a~~aL~nL~~~~-------~----~~-----~~iv~~---g~v~~Lv~lL~----~~~~~~~~~al~~L~~L~~~~~~~~ 554 (661)
.+++|..|+..- + .| ..+.+. .+++....+|. ..++.+...++.+|.....+-+. .
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~ 227 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-N 227 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-H
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-H
Confidence 566666443210 0 11 112211 11334444443 25677889999999988886543 3
Q ss_pred HHHhCCChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 555 AIGAAEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 555 ~i~~~g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
.++..+.++.+..+|. ++..++.|+.+|..+....
T Consensus 228 ~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 228 LIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred hhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcC
Confidence 4455677888888886 4889999999999987654
No 194
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.58 E-value=4.1 Score=48.26 Aligned_cols=141 Identities=8% Similarity=-0.041 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC---CCh--HHHHHHHHHHHhccCC-CcchhHhhhCCCh
Q 006099 366 GSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST---PDS--RTQEHAVTALLNLSIC-EDNKGSIVSSGAV 439 (661)
Q Consensus 366 ~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s---~~~--~i~~~A~~~L~nLs~~-~~~k~~i~~~g~i 439 (661)
.+|..+..++.+++.++.+-......-.-..++|.|+.++.+ .+. .++..++++++..+.- ..+... -...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHHH
Confidence 579999999999999986433332222223467888888753 123 3445677888877542 111111 12234
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhh------cCCcHHHHHhhh----cCCHHHHHHHHHHHHHhhccc
Q 006099 440 PSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGA------SGAIPPLVTLLS----EGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 440 ~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~ 509 (661)
..|+..|...++.++..|++++.+|+.. .+..+.. ...++.++..+. .-+......+..++..+....
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4455555555688999999999999853 3444432 124454444433 235566667777777776654
Q ss_pred C
Q 006099 510 G 510 (661)
Q Consensus 510 ~ 510 (661)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 195
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=81.85 E-value=17 Score=36.59 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=96.2
Q ss_pred HHHhhcccCc-hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhh-CCCHHHHHH
Q 006099 502 LFNLCIYQGN-KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIG-NGSPRNREN 579 (661)
Q Consensus 502 L~nL~~~~~~-~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~ke~ 579 (661)
|.||..++.+ ..-+++.++|..+-..+.-++.++.......|..++....-...-. ...+|.++..+. ++++++--.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 4556666655 4468899999999999988999999999999998887653321111 146788888776 577888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC-------ChHHHHHHHHHHHHHH
Q 006099 580 AAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG-------TDRGKRKAAQLLERMS 630 (661)
Q Consensus 580 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~k~~A~~lL~~L~ 630 (661)
..+.|.|+..+........+..|+++.|...+... +..-|+.|..++.+--
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 89999999999888888889999999999987543 2233455777666543
No 196
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.50 E-value=6.8 Score=38.86 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=98.8
Q ss_pred ChHHHHHHHccC------CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhh--hcCCHHHHHHHHHHHHHhhccc
Q 006099 438 AVPSIVHVLRIG------SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLL--SEGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 438 ~i~~Lv~lL~~~------~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~aL~nL~~~~ 509 (661)
.+..+..+++++ +.+..+.|...|..+|.+-++-.+|.... ...|-.++ ...++.+++.|+++|..-..+.
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 355566777776 34567889999999998888888887743 34444443 3446778999999998877766
Q ss_pred CchHHHH-H--cCChHHHHhcccC-------CCccHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCC--CHHHH
Q 006099 510 GNKGKAV-R--AGVVPTLMHLLTE-------PGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNG--SPRNR 577 (661)
Q Consensus 510 ~~~~~iv-~--~g~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~k 577 (661)
+.....| . ...+..+..-|.. ....+++.-+.+|..|..++. .+ ...++..|.+++... ++..|
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence 5544333 2 3444444443322 234677888899999988863 12 134677888888766 88999
Q ss_pred HHHHHHHHHHh
Q 006099 578 ENAAAVLVHLC 588 (661)
Q Consensus 578 e~A~~~L~~L~ 588 (661)
..++.++..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99998888776
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.00 E-value=19 Score=42.58 Aligned_cols=221 Identities=15% Similarity=0.107 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCC-----
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSIC----- 426 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~----- 426 (661)
-..+..++..+.+++...|.+|-..|..+-+ +++ +...+..+|. +.+..+|..|+..|.|....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~---------~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPD---------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STT---------GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cch---------HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 3556677777777777788888888887754 332 3344455553 45888999999999887431
Q ss_pred -CcchhHhhhCCChHHHHHHHccC-----CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHH
Q 006099 427 -EDNKGSIVSSGAVPSIVHVLRIG-----SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAAT 500 (661)
Q Consensus 427 -~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 500 (661)
++.|..| ....+..+...-... +..++...+.++..++..+-.. ...+.++.|+..+. .++..+..++.
T Consensus 85 ~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHH
Confidence 1223332 222233332221111 2466777777887776542110 12377889999886 45556677777
Q ss_pred HHHHhhccc-----C----ch-----HHHHH--cCChHHHHhcccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 006099 501 ALFNLCIYQ-----G----NK-----GKAVR--AGVVPTLMHLLTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEAVP 563 (661)
Q Consensus 501 aL~nL~~~~-----~----~~-----~~iv~--~g~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~i~ 563 (661)
+|..|+..- + .+ ..+.. ..++..+...+.. .+..+...++.++.+...+-+.. .+.....++
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~-~~~~~~ll~ 238 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR-YIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHSSSHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH-HHhhhhHHH
Confidence 777776321 1 11 11221 1223334444433 45678888999998776654432 244456666
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 564 VLVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 564 ~Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
.+.+.+. .++..+..|+.+|..+...
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6663222 3788899999999998865
No 198
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=78.41 E-value=62 Score=38.28 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=136.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccCC----
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSIC---- 426 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~~---- 426 (661)
+-..+..++..+.+++.+.+.+|-..|..+-+ +++. ...+..+|.. .++.+|..|+.+|.+....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 35678888888888888888888888877643 4443 3334445544 5889999999999887542
Q ss_pred --CcchhHhhhCCChHHHHHHHcc-----CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHH
Q 006099 427 --EDNKGSIVSSGAVPSIVHVLRI-----GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAA 499 (661)
Q Consensus 427 --~~~k~~i~~~g~i~~Lv~lL~~-----~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 499 (661)
++.+..+ ....+..+...-.+ .++.++...+.++..+...+-.. .-.++++-++..+.. ++......+
T Consensus 96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHH
Confidence 1222222 33344444443322 23566677777777776432110 124678888888765 345566677
Q ss_pred HHHHHhhcc--c-------CchH----HHHHcCChHHHHhc----ccC-CCccHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 006099 500 TALFNLCIY--Q-------GNKG----KAVRAGVVPTLMHL----LTE-PGGGMVDEALAILAILSSHPEGKAAIGAAEA 561 (661)
Q Consensus 500 ~aL~nL~~~--~-------~~~~----~iv~~g~v~~Lv~l----L~~-~~~~~~~~al~~L~~L~~~~~~~~~i~~~g~ 561 (661)
.+|..|+.. + ..|. ..+.. .++.++.+ |.. .++.+...++.+|..+..+-+.. .+++.+.
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~-~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLG-YIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHH-HhccchH
Confidence 777777643 1 0111 11121 24444444 422 56778888999999999886543 5667777
Q ss_pred hHHHH-HHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 562 VPVLV-EVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 562 i~~Lv-~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
++.|+ .+| +++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 88774 555 4788999999999998865
No 199
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=77.72 E-value=34 Score=34.56 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHc-cCC
Q 006099 372 RSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLR-IGS 450 (661)
Q Consensus 372 ~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~ 450 (661)
..+...|..+. ++.+.-.-++..++|..+...+..++.++.+..+..|+..|... .-..+--...+|.++..+. +++
T Consensus 261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCC
Confidence 34444454444 67788889999999999999999999999999999888876431 1111113456788888776 457
Q ss_pred HHHHHHHHHHHHHcccCC-chhhhhhhcCCcHHHHHhhhcC-------CHHHHHHHHHHHHHhhc-------------cc
Q 006099 451 MEARENAAATLFSLSVID-ENKVTIGASGAIPPLVTLLSEG-------TQRGKKDAATALFNLCI-------------YQ 509 (661)
Q Consensus 451 ~e~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~-------------~~ 509 (661)
.++.......|.|..... ..++.....|+|+.|-..+... +..-++.||.+++|-.. +.
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 899999999999988776 4566667779999998887643 23345566666655321 11
Q ss_pred ------Cc-hH---HHHHcCChHHHHhcccCCC------ccHHHHHHHHHHHhcCCh
Q 006099 510 ------GN-KG---KAVRAGVVPTLMHLLTEPG------GGMVDEALAILAILSSHP 550 (661)
Q Consensus 510 ------~~-~~---~iv~~g~v~~Lv~lL~~~~------~~~~~~al~~L~~L~~~~ 550 (661)
++ +. ++++..++..|+..|+-.. .+++...++...-+...|
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP 475 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTP 475 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCT
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCC
Confidence 11 12 3455677788888876422 234445555555555443
No 200
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.46 E-value=61 Score=38.23 Aligned_cols=139 Identities=12% Similarity=0.016 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHcccCCchh-hhhhhcCCcHHHHHhhhc-----CCHHHHHHHHHHHHHhhcccCchHHHHHcCChH
Q 006099 449 GSMEARENAAATLFSLSVIDENK-VTIGASGAIPPLVTLLSE-----GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVP 522 (661)
Q Consensus 449 ~~~e~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~ 522 (661)
.++..++.++.++..++..-... ..-.-...++.|+.+... ..+.++..+++++...+..-......+. .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 46788999999999987542111 111011233444443221 1223333577777776643222222222 4667
Q ss_pred HHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh--C----CChHH----HHHHhhCCCHHHHHHHHHHHHHHhcC
Q 006099 523 TLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--A----EAVPV----LVEVIGNGSPRNRENAAAVLVHLCAG 590 (661)
Q Consensus 523 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~----g~i~~----Lv~lL~~~~~~~ke~A~~~L~~L~~~ 590 (661)
.++..|.++++.++..|+.+|.+++.. .+..+.. . ..++. +..++..-+.........++..+...
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 777788778899999999999999974 3333331 1 12333 33444444455556666666666543
No 201
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.28 E-value=8 Score=34.19 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC------CChHHHHHHHHHHHhcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLS 424 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s------~~~~i~~~A~~~L~nLs 424 (661)
....+..|.+.|.+.++.+|..|+..|-.+.+. +......++...++..|++++.. .+..++..++..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998875 45556777788899999999874 37889999888887765
Q ss_pred C
Q 006099 425 I 425 (661)
Q Consensus 425 ~ 425 (661)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=76.18 E-value=18 Score=34.51 Aligned_cols=142 Identities=14% Similarity=0.064 Sum_probs=94.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHH-hhhcCCHHHHHHHHHHHHHhhc-ccCchHHHHHc
Q 006099 441 SIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVT-LLSEGTQRGKKDAATALFNLCI-YQGNKGKAVRA 518 (661)
Q Consensus 441 ~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~iv~~ 518 (661)
....+.++...++|..|+.+|..+ .. ....++.+.. +..+.+=.+++.++.++..++. ....+
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------ 139 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------ 139 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence 344445566678999999988877 21 1234555555 4445567889999999999885 32222
Q ss_pred CChHHHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006099 519 GVVPTLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGAA-EAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQYLAE 597 (661)
Q Consensus 519 g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~~~~~ 597 (661)
.++.+.....+++..++..|...+.--+..+..+ .+. -+++.|-.+..+.+.-+|....+.|..++..+|+-+..
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 5677888888999999888887664333222111 000 13455555556677888999999999999999987766
Q ss_pred HHHc
Q 006099 598 AKEL 601 (661)
Q Consensus 598 ~~~~ 601 (661)
.++.
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6553
No 203
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=76.17 E-value=5.6 Score=47.06 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHcccCCch-hhhhhhcCCcHHHHHhhhcC-----CHHHHHHHHHHHHHhhcccCchHHHHHcCChH
Q 006099 449 GSMEARENAAATLFSLSVIDEN-KVTIGASGAIPPLVTLLSEG-----TQRGKKDAATALFNLCIYQGNKGKAVRAGVVP 522 (661)
Q Consensus 449 ~~~e~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~ 522 (661)
.+...++.++++++.++..... ...-.-..+++.|+.++... ...++..++++|+..+..-.....+. ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 4789999999999999876432 22222236678888887642 22344466677777665433333332 23455
Q ss_pred HHHhcccCCCccHHHHHHHHHHHhcCChhhHHHHHh--C----CChHHHHH----HhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 523 TLMHLLTEPGGGMVDEALAILAILSSHPEGKAAIGA--A----EAVPVLVE----VIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 523 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~~~~~~i~~--~----g~i~~Lv~----lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
.|+..+.++++.++..|+.++.++|.. ++..+.. . ..++.++. ....-++..+..+..++..+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 566666556788999999999999963 4444432 1 12343333 223345666777777777776644
No 204
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.11 E-value=7.9 Score=34.85 Aligned_cols=73 Identities=5% Similarity=0.077 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLS 424 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs 424 (661)
....+..|.+.|++.++.+|..|+..|-.+.+. .......+....++..|++++.. .++.++..++..+...+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998875 34555677777888888888875 57889998888777665
No 205
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=72.59 E-value=72 Score=37.75 Aligned_cols=165 Identities=14% Similarity=0.082 Sum_probs=94.7
Q ss_pred CHHHHHHhhCC----CChHHHHHHHHHHHhccC----CCcchhHhhhCCChHHHHHHH----ccCCHHHHHHHHHHHHHc
Q 006099 397 AIPLLVGLLST----PDSRTQEHAVTALLNLSI----CEDNKGSIVSSGAVPSIVHVL----RIGSMEARENAAATLFSL 464 (661)
Q Consensus 397 ~i~~Lv~lL~s----~~~~i~~~A~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL----~~~~~e~~~~a~~~L~~L 464 (661)
.+..+..++++ .++.++..++-++++|.. +...+ ....++.+.+.| .+++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34555566665 355667777777766642 22111 112245555444 556777788888999998
Q ss_pred ccCCchhhhhhhcCCcHHHHHhhhc-------CCHHHHHHHHHHHHHhhcccCchHHHHHcCChHHHHhcccC--CCccH
Q 006099 465 SVIDENKVTIGASGAIPPLVTLLSE-------GTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMHLLTE--PGGGM 535 (661)
Q Consensus 465 s~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~ 535 (661)
-.. ..++.|..++.. ...+++..|+.+|.++....... +-+.|++++.+ .+.++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHH
Confidence 642 346666666642 23567888999999998543222 22346677744 45666
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhC-CCHHHHHHHHHHHHHHhcCC
Q 006099 536 VDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGN-GSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 536 ~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~ke~A~~~L~~L~~~~ 591 (661)
+..|+.+|. -.+|.. ..+..+...+.. .+..+.-.....|.+++...
T Consensus 531 RiaA~~~Lm--~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFF--ESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHH--HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH--HHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 666665554 223321 124444555543 45666666666676666544
No 206
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.54 E-value=9.4 Score=34.63 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC------CChHHHHHHHHHHHhcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLS 424 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~i~~~A~~~L~nLs 424 (661)
....+..|.+.|.+.++.+|..|+..|-.+.+.. ......+....++..|+.++.. .+..++..++..+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999998753 4455677778889999999863 36789999888887765
Q ss_pred C
Q 006099 425 I 425 (661)
Q Consensus 425 ~ 425 (661)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.57 E-value=9.7 Score=33.27 Aligned_cols=74 Identities=5% Similarity=0.050 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccC
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~ 425 (661)
....+..|.+.|.+.++.+|..|+..|..+.+.. ......+....++..|+.+++..++.++..++..+...+.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998887643 3334466666788888888877788999998888877653
No 208
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=66.00 E-value=73 Score=37.34 Aligned_cols=284 Identities=11% Similarity=0.050 Sum_probs=153.9
Q ss_pred chhhhhhHHHHHHHcCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHccC---CHHHHHHHHHHHHHHHhhC-hh--
Q 006099 314 NYVLRSLIAQWCEANGIEPPKRPSSSRPSKTSSACSPAERTKIEILLCKLTSG---SPEDQRSAAGEIRLLAKRN-AD-- 387 (661)
Q Consensus 314 n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~i~~Lv~~L~s~---~~~~~~~Al~~L~~L~~~~-~~-- 387 (661)
+...|....+|+..-.- ..+........|.+. +..++.-|+..|.+..+.- ++
T Consensus 21 d~~~r~~A~~~L~~~q~---------------------sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS---------------------SSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp CHHHHHHHHHHHHHHHH---------------------STTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred CHHHHHHHHHHHHHHHc---------------------ChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 45667777777765221 013556666777553 6889999999998776522 22
Q ss_pred --hHHHHHHhCCHHHHHHhhC-CCChHHHHHHHHHHHhccCCC--cchhHhhhCCChHHHHHHHccCCH-HHHHHHHHHH
Q 006099 388 --NRVAIAEAGAIPLLVGLLS-TPDSRTQEHAVTALLNLSICE--DNKGSIVSSGAVPSIVHVLRIGSM-EARENAAATL 461 (661)
Q Consensus 388 --~r~~i~~~g~i~~Lv~lL~-s~~~~i~~~A~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~-e~~~~a~~~L 461 (661)
.+..+ ....+..+...-. ....-++...+.+|..+.... .. ..+.++.++.++.+++. ........+|
T Consensus 80 ~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 80 LLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp HHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 23222 2233444443111 234667788888888776531 22 34567778888866543 3444455555
Q ss_pred HHcccC--C-c--------h-----hhhhhhc---CCcHHHHHhhhc----CCHHHHHHHHHHHHHhhcccCchHHHHHc
Q 006099 462 FSLSVI--D-E--------N-----KVTIGAS---GAIPPLVTLLSE----GTQRGKKDAATALFNLCIYQGNKGKAVRA 518 (661)
Q Consensus 462 ~~Ls~~--~-~--------~-----~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~iv~~ 518 (661)
..|+.. + . . +..+.+. ..++....+|.. .++.+...++.+|......-+ -..++..
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 544321 0 0 0 1122211 113444444433 567777888888877665422 2345566
Q ss_pred CChHHHHhcccCCCccHHHHHHHHHHHhcCC---hhhHHHHHhCCChHHHHHHhh-----CCCHHHHHHHHHHHHHHhc-
Q 006099 519 GVVPTLMHLLTEPGGGMVDEALAILAILSSH---PEGKAAIGAAEAVPVLVEVIG-----NGSPRNRENAAAVLVHLCA- 589 (661)
Q Consensus 519 g~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~ke~A~~~L~~L~~- 589 (661)
+.++.+..+|.+ +.++..|+.+|..+... ++.+..++.. + .|...+. ..+.+..+.-+.++..++.
T Consensus 233 ~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 233 PCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 788888888864 78889999999876543 3444444332 1 1222222 2445554444444433321
Q ss_pred -----CC-----HHHHHHH--HHcCCHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006099 590 -----GD-----QQYLAEA--KELGVMGPLVDLAQNGTDRGKRKAAQLLERMS 630 (661)
Q Consensus 590 -----~~-----~~~~~~~--~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~ 630 (661)
.. ++..... .-.++++.++....+++..+...+...+..+.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 11 1111111 11257888888888888877766666555444
No 209
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=65.62 E-value=37 Score=32.38 Aligned_cols=139 Identities=16% Similarity=0.055 Sum_probs=89.4
Q ss_pred HHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCChHHHHHHHHHHHhccC--CCcch
Q 006099 355 KIEILLCKLT-SGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAVTALLNLSI--CEDNK 430 (661)
Q Consensus 355 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~i~~~A~~~L~nLs~--~~~~k 430 (661)
.+..+...|. +...++|..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3444555554 45567888888877665 211 123456655 5556788999999998888764 221
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccC
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQG 510 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 510 (661)
..++.+...+.+.+..+|..|+..+.--+..... +.--.-+++.|-.+..+.+.-+++...++|..++..++
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 2567888899999999999888776432221110 00011245555555566778899999999999998776
Q ss_pred chH
Q 006099 511 NKG 513 (661)
Q Consensus 511 ~~~ 513 (661)
...
T Consensus 211 d~V 213 (240)
T 3l9t_A 211 DLV 213 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 210
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=64.25 E-value=55 Score=39.36 Aligned_cols=214 Identities=11% Similarity=0.034 Sum_probs=122.3
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhh--CCCChHHHHHHHHHHHhccCC-----
Q 006099 356 IEILLCKLTSG--SPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLL--STPDSRTQEHAVTALLNLSIC----- 426 (661)
Q Consensus 356 i~~Lv~~L~s~--~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~i~~~A~~~L~nLs~~----- 426 (661)
+..++..+.++ +.+.+.+|-..|..+-+. ++ +...+...| .+.+..+|..|+.+|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44455444444 667788888888877542 21 233333333 345788999999888886431
Q ss_pred -CcchhHhhhCCChHHHHHHHcc-------CCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHH
Q 006099 427 -EDNKGSIVSSGAVPSIVHVLRI-------GSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDA 498 (661)
Q Consensus 427 -~~~k~~i~~~g~i~~Lv~lL~~-------~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 498 (661)
++.|..| .. .++..+.+ ....++...+.++..+...+-.. .-.+.++.|++++.+ ++..+..+
T Consensus 83 ~~e~k~~I-r~----~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 83 SRLEKVYL-KN----SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp CHHHHHHH-HH----HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHH
T ss_pred CHHHHHHH-HH----HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHH
Confidence 2223333 22 24444322 34677888888888877553210 124788899988876 45567778
Q ss_pred HHHHHHhhcc---cC----chHH----HHHc---CChHHHHhcccC-------------------CCccHHHHHHHHHHH
Q 006099 499 ATALFNLCIY---QG----NKGK----AVRA---GVVPTLMHLLTE-------------------PGGGMVDEALAILAI 545 (661)
Q Consensus 499 ~~aL~nL~~~---~~----~~~~----iv~~---g~v~~Lv~lL~~-------------------~~~~~~~~al~~L~~ 545 (661)
+.+|..|+.. .+ .+.. .+.. .+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888888642 11 1111 1111 222333333322 123455667777776
Q ss_pred hcCChhhHHHHHhCC--ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC
Q 006099 546 LSSHPEGKAAIGAAE--AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD 591 (661)
Q Consensus 546 L~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~ 591 (661)
...+-... .+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 234 ~l~Wi~~~-~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 234 YIDWVSMS-HITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTSCHH-HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHhccCHH-HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 65543332 222332 5666666655 5778999999999998754
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=63.98 E-value=1.5 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.5
Q ss_pred CCccCcCCcccccCCee
Q 006099 260 DDFRCPISLELMKDPVI 276 (661)
Q Consensus 260 ~~f~CpIc~~~m~dPv~ 276 (661)
+.|.||+|+.-+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45999999998887643
No 212
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.34 E-value=20 Score=31.65 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC------CChHHHHHHHHHHHhcc
Q 006099 352 ERTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST------PDSRTQEHAVTALLNLS 424 (661)
Q Consensus 352 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~i~~~A~~~L~nLs 424 (661)
....+..|.+.|.+.++.+|..|+..|..+.+.. ......|....++..|+++++. .+..++..++..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999887643 3345667777889999999863 47889999888887775
Q ss_pred C
Q 006099 425 I 425 (661)
Q Consensus 425 ~ 425 (661)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=63.10 E-value=2.3 Score=32.64 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=34.2
Q ss_pred ccCcCCcccccCCe----ecCCC----ccccHHHHHHHHHhCCCCCCCCCCCCcCCCCccch
Q 006099 262 FRCPISLELMKDPV----IVSTG----QTYERSCIEKWLEAGHRTCPKTQQTLTSTAVTPNY 315 (661)
Q Consensus 262 f~CpIc~~~m~dPv----~~~cg----~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~~n~ 315 (661)
-.||||+..+.--- .+.-+ .--+|.....-+.+-.+.||.|+..+....+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 46999998765210 11111 12356666666776778999999988776665443
No 214
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=59.76 E-value=69 Score=31.71 Aligned_cols=147 Identities=10% Similarity=0.093 Sum_probs=89.6
Q ss_pred CcHHHHHhhhcC------CHHHHHHHHHHHHHhhcccCchHHHHH--cCChHHHHhcccCCCccHHHHHHHHHH-HhcCC
Q 006099 479 AIPPLVTLLSEG------TQRGKKDAATALFNLCIYQGNKGKAVR--AGVVPTLMHLLTEPGGGMVDEALAILA-ILSSH 549 (661)
Q Consensus 479 ~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~~~~~~al~~L~-~L~~~ 549 (661)
.+..+..++++| +......|+-.|..++..-.--..|++ ...+..|+ +.....+.+.+.|.++|+ .|-.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 345556667776 233456677777777765444445554 23334444 223345568888999887 55566
Q ss_pred hhhHHHHHhC--CChHHHHHHhhC-------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHhhhcC--ChHH
Q 006099 550 PEGKAAIGAA--EAVPVLVEVIGN-------GSPRNRENAAAVLVHLCAGDQQYLAEAKELGVMGPLVDLAQNG--TDRG 618 (661)
Q Consensus 550 ~~~~~~i~~~--g~i~~Lv~lL~~-------~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~ 618 (661)
|.....|... ..+..+..-|.. ....+...-+.+|..|...+.... ...+..|..++..+ .+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHH
Confidence 6666666543 445554443332 234455566788888877652221 34567788777777 9999
Q ss_pred HHHHHHHHHHHHh
Q 006099 619 KRKAAQLLERMSR 631 (661)
Q Consensus 619 k~~A~~lL~~L~~ 631 (661)
|.++..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987764
No 215
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=56.49 E-value=1.4e+02 Score=28.65 Aligned_cols=145 Identities=10% Similarity=0.065 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchh
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKG 431 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~ 431 (661)
.+.+-.|+..-+....+.+...+...+.++.+. +..- ..+++.++.+-.+.+.++|+..+..+...+.. .
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k 84 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----K 84 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----H
Confidence 344555555555544478888999999876543 3222 34578888887778899999988888777632 1
Q ss_pred HhhhCCChHHHHHHHccCCHHHHHHHHHHHHHc--------ccCCch---hhhhhhc--CCcHHHHHhhhcCCHHHHHHH
Q 006099 432 SIVSSGAVPSIVHVLRIGSMEARENAAATLFSL--------SVIDEN---KVTIGAS--GAIPPLVTLLSEGTQRGKKDA 498 (661)
Q Consensus 432 ~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~L--------s~~~~~---~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a 498 (661)
.-.....++.|..+|.+.++.+.+.++.+..++ +.++.. ....-+. ..=..++.++.+++..++..+
T Consensus 85 ~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~ 164 (257)
T 3gs3_A 85 VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNA 164 (257)
T ss_dssp GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHH
Confidence 112345677888888887888887777655544 222211 0111111 233455556666777777777
Q ss_pred HHHHHHhh
Q 006099 499 ATALFNLC 506 (661)
Q Consensus 499 ~~aL~nL~ 506 (661)
++.+..+.
T Consensus 165 iKF~e~vI 172 (257)
T 3gs3_A 165 IKFLEGVV 172 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
No 216
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=55.64 E-value=5.8 Score=31.67 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=35.8
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
-+-|..|-...+. .+....|-+|..|+...+. ....||+|+++|+...
T Consensus 28 ~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENKG-LVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCS
T ss_pred cccChhhccccCC-eeeecchhhHHHHHHHHHh-hccCCcccCCcCCcce
Confidence 3668777665553 3334579999999988776 6678999999998654
No 217
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=54.79 E-value=3.2 Score=25.31 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.2
Q ss_pred CCccCcCCcccccCC
Q 006099 260 DDFRCPISLELMKDP 274 (661)
Q Consensus 260 ~~f~CpIc~~~m~dP 274 (661)
..|.||+|+..|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 468899999888776
No 218
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.87 E-value=29 Score=31.08 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=53.9
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhc-CChHHHHHHHHHHHHHHh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQN-GTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~k~~A~~lL~~L~~ 631 (661)
++..|.+-|.++++.++..|+.+|-.+..+. ......+....++..|+.++.. .++.+++++..++..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556777788899999999998888877664 4455566666678888888765 568999999998877664
No 219
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=51.78 E-value=20 Score=31.26 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=53.4
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQNGTDRGKRKAAQLLERMSR 631 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~k~~A~~lL~~L~~ 631 (661)
++..|..-|.++++.++..|+.+|-.+..+.+ .....+....++..|..++...++.++++...++.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45567777888899999999888877766543 444555555677778888877889999999999886664
No 220
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.25 E-value=26 Score=33.24 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhccC
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs~ 425 (661)
...+..|.+.|.+.++.+|..|+..|..+.+. .......|....++..|+.+++. .+..+++.++..+...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999888764 33345566677778888888764 478899998888877753
No 221
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=49.92 E-value=29 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCccCcCCcccccCCeecCC----CccccHHHHHHHHHh
Q 006099 259 PDDFRCPISLELMKDPVIVST----GQTYERSCIEKWLEA 294 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~c----g~t~~r~~I~~w~~~ 294 (661)
...++|.+|.+-+.|-..+-| +|.||-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345899999999988755433 699999998888873
No 222
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.70 E-value=32 Score=30.17 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=56.4
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHhhhc------CChHHHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~L~~~ 632 (661)
++..|..-|+++++.++..|+.+|-.+..+. +.....+....++..|+.++.. .+..+++++..++..-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999988887664 4566777677788889988863 3688999998888877643
No 223
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.57 E-value=10 Score=32.04 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=38.7
Q ss_pred CCCccCcCCcccccC---CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 259 PDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 259 p~~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
++-|.|..|...+.+ +....-|..||..|..+.+. ....|..|+.++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCchh
Confidence 345999999999963 45566789999999988764 2227999998887544
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.38 E-value=32 Score=32.41 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHHHHHhhCC-CChHHHHHHHHHHHhcc
Q 006099 353 RTKIEILLCKLTSGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPLLVGLLST-PDSRTQEHAVTALLNLS 424 (661)
Q Consensus 353 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~i~~~A~~~L~nLs 424 (661)
.+.+..|.+.|.+.++.+|..|+..|..+.+.. ......|+...++..|+.++++ .+..++..++..+...+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988754 3345567777788888888764 46788888887776664
No 225
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=46.41 E-value=2.3e+02 Score=33.50 Aligned_cols=215 Identities=11% Similarity=0.079 Sum_probs=121.9
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhHhhhCCChHHHHHHHcc-CCHHHHHHHHHHHHHcccCC-----ch
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGSIVSSGAVPSIVHVLRI-GSMEARENAAATLFSLSVID-----EN 470 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~a~~~L~~Ls~~~-----~~ 470 (661)
.+..++..+.+++...+..|-..|..+-.+++. ...+..+|.+ .++.+|-.|+.+|.+..... +.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 345566666667777788888888777554433 3333444444 37889999998888765432 11
Q ss_pred hhhhhhcCCcHHHHHhhhc-----CCHHHHHHHHHHHHHhhccc--CchHHHHHcCChHHHHhcccCCCccHHHHHHHHH
Q 006099 471 KVTIGASGAIPPLVTLLSE-----GTQRGKKDAATALFNLCIYQ--GNKGKAVRAGVVPTLMHLLTEPGGGMVDEALAIL 543 (661)
Q Consensus 471 ~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L 543 (661)
...-.+...+..+...-.. .++..+...+.++..+.... +.- .+.++.++.++.. ++...+..+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 1122222333333333221 13444555566666665432 211 2455666666643 344566677777
Q ss_pred HHhcCC----h-----hh-----HHHHHhCCChHHHHHH----hh-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 006099 544 AILSSH----P-----EG-----KAAIGAAEAVPVLVEV----IG-NGSPRNRENAAAVLVHLCAGDQQYLAEAKELGVM 604 (661)
Q Consensus 544 ~~L~~~----~-----~~-----~~~i~~~g~i~~Lv~l----L~-~~~~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i 604 (661)
..|+.. . .. +..+.. -++.++.+ |. ..++.+...+..+|.....--+ ...+.+.+.+
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll 249 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHH
Confidence 766643 0 01 122332 24445444 43 3567777778888888776543 3456667788
Q ss_pred HHH-HHhhhcCChHHHHHHHHHHHHHHhh
Q 006099 605 GPL-VDLAQNGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 605 ~~L-~~ll~~~~~~~k~~A~~lL~~L~~~ 632 (661)
+.| ..++ +++..+..|..+|..+...
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 877 4555 4678899999999887653
No 226
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=46.12 E-value=2.1e+02 Score=27.48 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=68.2
Q ss_pred CCChHHHHHHHccCCHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHh--------hc
Q 006099 436 SGAVPSIVHVLRIGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNL--------CI 507 (661)
Q Consensus 436 ~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL--------~~ 507 (661)
...++.++.+-.+.+.++|...+..+...+..+. -.....++.|..++++.++.+.+.++.+..++ +.
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666556678899988888877763221 12336778888889888888888777655544 33
Q ss_pred ccCc------hHHHHHcCChHHHHhcccCCCccHHHHHHHHHHHh
Q 006099 508 YQGN------KGKAVRAGVVPTLMHLLTEPGGGMVDEALAILAIL 546 (661)
Q Consensus 508 ~~~~------~~~iv~~g~v~~Lv~lL~~~~~~~~~~al~~L~~L 546 (661)
+++. ....+ ...=..++.++.+.+..++..|++++..+
T Consensus 128 ~~~~~~~~~~~W~~m-~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 128 LMEPGDSAEQAWNIL-SLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp SSSCCHHHHHHHHHH-HHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH-HHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 3331 11111 12334566677778888999999888754
No 227
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.47 E-value=54 Score=29.00 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHhCCHHH-HHHhhCC---CChHHHHHHHHHHHhccC
Q 006099 352 ERTKIEILLCKLT-SGSPEDQRSAAGEIRLLAKRN-ADNRVAIAEAGAIPL-LVGLLST---PDSRTQEHAVTALLNLSI 425 (661)
Q Consensus 352 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~s---~~~~i~~~A~~~L~nLs~ 425 (661)
....+..|.+.|+ +.++.+|..|+..|..+.+.. ......++...++.. |++++.. ....+++.++..+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3688999999998 589999999999999988753 555666777788887 7888843 345888888887776653
No 228
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.24 E-value=39 Score=30.48 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhhc------CChHHHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQN------GTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~------~~~~~k~~A~~lL~~L~~~ 632 (661)
++..|.+-|+++++.++..|+.+|-.+..+.+ .....+....++..|+.++.. .+..+++++..++..-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677778888999999999999988887755 455566666788888888852 3688999999999887653
No 229
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=44.67 E-value=1.7e+02 Score=30.06 Aligned_cols=144 Identities=9% Similarity=0.039 Sum_probs=90.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHhCCHHHHHHhhCCCChHHHHHHHHHHHhccCCCcchhH
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKR-NADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICEDNKGS 432 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~~k~~ 432 (661)
+.+-.|+..-.....+.+...+..++.+..+ ++. .-.++++.++.+-.+.+.++|...+..|...+.. +..
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIE 96 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGG
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHH
Confidence 4444455544442335788889999887543 332 2256899999999999999999998888777642 111
Q ss_pred hhhCCChHHHHHHHccCCHHHHHHHHHHHHHcc--------cCCchh---hhhhh--cCCcHHHHHhhhcCCHHHHHHHH
Q 006099 433 IVSSGAVPSIVHVLRIGSMEARENAAATLFSLS--------VIDENK---VTIGA--SGAIPPLVTLLSEGTQRGKKDAA 499 (661)
Q Consensus 433 i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls--------~~~~~~---~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~ 499 (661)
+ -..+++.|..+|.+.++.+...++.+..++- ..+... ...-+ ...-..++.++.+++..++..++
T Consensus 97 l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 97 L-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 1 2446677888888778888777766555441 111110 11111 12334566667778888888888
Q ss_pred HHHHHhh
Q 006099 500 TALFNLC 506 (661)
Q Consensus 500 ~aL~nL~ 506 (661)
+.+-.+.
T Consensus 176 KFle~VI 182 (386)
T 3o2t_A 176 KFVEGLI 182 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 230
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.12 E-value=49 Score=28.74 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=48.7
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHc-CCHHHHHHhhhc-----C---ChHHHHHHHHHHHHHH
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKEL-GVMGPLVDLAQN-----G---TDRGKRKAAQLLERMS 630 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~-~~~~~~~~-g~i~~L~~ll~~-----~---~~~~k~~A~~lL~~L~ 630 (661)
++..|.+-|...++..+-.|+.+|-.||.++++ ++..+... ..|..+.++-.- | ...++.+|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 456778888888899999999999999976654 44444443 233434333221 1 2668999999999886
Q ss_pred h
Q 006099 631 R 631 (661)
Q Consensus 631 ~ 631 (661)
+
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 5
No 231
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.94 E-value=7.3 Score=26.86 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=12.0
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 36899999999985
No 232
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=43.81 E-value=18 Score=29.21 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=38.3
Q ss_pred CCCCccCcCCcccccCCeec-CCC-----ccccHHHHHHHHHhCCCCCCCCCCCCcCCC
Q 006099 258 IPDDFRCPISLELMKDPVIV-STG-----QTYERSCIEKWLEAGHRTCPKTQQTLTSTA 310 (661)
Q Consensus 258 ~p~~f~CpIc~~~m~dPv~~-~cg-----~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~ 310 (661)
+++.++|||+++.-..-|.+ ..+ .-|+...+.+...+|. .=|.+|.+++...
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sM 81 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASI 81 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhh
Confidence 35778999999988877765 222 2499999999888554 4588888877543
No 233
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.38 E-value=40 Score=29.63 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHhhh------cCChHHHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQ-QYLAEAKELGVMGPLVDLAQ------NGTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~------~~~~~~k~~A~~lL~~L~~~ 632 (661)
++..|..-|.+.++.++..|+.+|-.+..+.+ .+...+....++..|+.++. ..+..++++...++..-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45577777888999999999998888776554 44566666678888888885 35788999999998877653
No 234
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.23 E-value=12 Score=26.60 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=12.7
Q ss_pred CCCCCCCccCcCCcc
Q 006099 255 APVIPDDFRCPISLE 269 (661)
Q Consensus 255 ~~~~p~~f~CpIc~~ 269 (661)
..++|+++.||+|..
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 357899999999985
No 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.97 E-value=18 Score=30.60 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=37.4
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++-|.|..|...+.+ +....-|..||..|..+. ....|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCc
Confidence 467999999998876 455677899999998664 45689999998874
No 236
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.35 E-value=36 Score=32.21 Aligned_cols=69 Identities=6% Similarity=0.077 Sum_probs=53.8
Q ss_pred CHHHHHHhhCCCChHHHHHHHHHHHhccCCCc--chhHhhhCCChHHHHHHHccC-CHHHHHHHHHHHHHcc
Q 006099 397 AIPLLVGLLSTPDSRTQEHAVTALLNLSICED--NKGSIVSSGAVPSIVHVLRIG-SMEARENAAATLFSLS 465 (661)
Q Consensus 397 ~i~~Lv~lL~s~~~~i~~~A~~~L~nLs~~~~--~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~a~~~L~~Ls 465 (661)
++..|.+-|++.++.++..|+.+|-.+.++-. ....|.....+..|+.+++.. +.++++.++.++...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 45678888889999999999998888887633 355666777778888888654 6789998888887665
No 237
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=40.03 E-value=5.5e+02 Score=30.60 Aligned_cols=250 Identities=11% Similarity=0.031 Sum_probs=130.8
Q ss_pred cCCHHHHHHHHHHHHHHHhh-----ChhhHHHHHHhCCHHHHHHhhCC---CChHHHHHHHHHHHhccCC--CcchhHhh
Q 006099 365 SGSPEDQRSAAGEIRLLAKR-----NADNRVAIAEAGAIPLLVGLLST---PDSRTQEHAVTALLNLSIC--EDNKGSIV 434 (661)
Q Consensus 365 s~~~~~~~~Al~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~s---~~~~i~~~A~~~L~nLs~~--~~~k~~i~ 434 (661)
+.+..++.-|+..|++..+. +++.+..|. ...+..+...-.. ....++...+.++..++.. ++.
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----- 131 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----- 131 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----
Confidence 45788899999999987643 233444443 2233443333211 3577888888888887754 222
Q ss_pred hCCChHHHHHHHccCCHHHHHHHHHHHHHcccC---Cc----hhh-----hhhhc--CCcHHHHHhhhc-----------
Q 006099 435 SSGAVPSIVHVLRIGSMEARENAAATLFSLSVI---DE----NKV-----TIGAS--GAIPPLVTLLSE----------- 489 (661)
Q Consensus 435 ~~g~i~~Lv~lL~~~~~e~~~~a~~~L~~Ls~~---~~----~~~-----~i~~~--g~i~~Lv~lL~~----------- 489 (661)
-.+.++.|+.++.+ +...++.+..+|..|+.. .+ .+. .+... ..++.+..++..
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35677888888866 556677788888887642 11 111 11111 223333333432
Q ss_pred --------CCHHHHHHHHHHHHHhhcccCchHHHHHcC--ChHHHHhcccCCCccHHHHHHHHHHHhcCCh---hhHHHH
Q 006099 490 --------GTQRGKKDAATALFNLCIYQGNKGKAVRAG--VVPTLMHLLTEPGGGMVDEALAILAILSSHP---EGKAAI 556 (661)
Q Consensus 490 --------~~~~~~~~a~~aL~nL~~~~~~~~~iv~~g--~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~---~~~~~i 556 (661)
++..+...++.++.+....-+. ..+++.. .++.+..++. ++.++..|+.+|..+.... +.+..+
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~l 287 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPL 287 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHH
Confidence 1123445556666554432221 1223322 6666666665 5678899999999887643 333333
Q ss_pred HhC---CChHHHHHHhh--C----C--CHHHHHHHHHHHHHHhcCCHHHHHHHHH----------cCCHHHHHHhhhcCC
Q 006099 557 GAA---EAVPVLVEVIG--N----G--SPRNRENAAAVLVHLCAGDQQYLAEAKE----------LGVMGPLVDLAQNGT 615 (661)
Q Consensus 557 ~~~---g~i~~Lv~lL~--~----~--~~~~ke~A~~~L~~L~~~~~~~~~~~~~----------~g~i~~L~~ll~~~~ 615 (661)
+.. ..+..++..+. . . +....+.-+.++..++. .....+.+ .++++.++.+..+.+
T Consensus 288 i~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~ 364 (1204)
T 3a6p_A 288 MVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHPS 364 (1204)
T ss_dssp GGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC
T ss_pred HHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCcc
Confidence 321 11234444432 1 1 13344555556666552 12211111 134666666666766
Q ss_pred hHHHHHHHHHHH
Q 006099 616 DRGKRKAAQLLE 627 (661)
Q Consensus 616 ~~~k~~A~~lL~ 627 (661)
..+...+...-.
T Consensus 365 ~~vs~~~l~fW~ 376 (1204)
T 3a6p_A 365 QFLRSSTQMTWG 376 (1204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 666555554333
No 238
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.68 E-value=17 Score=35.28 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHhhcccC-chHHHHHc----CChHHHHhcccC----CCccHHHHHHHHHHHhcCChhh-HHHHHh
Q 006099 489 EGTQRGKKDAATALFNLCIYQG-NKGKAVRA----GVVPTLMHLLTE----PGGGMVDEALAILAILSSHPEG-KAAIGA 558 (661)
Q Consensus 489 ~~~~~~~~~a~~aL~nL~~~~~-~~~~iv~~----g~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~-~~~i~~ 558 (661)
++++..+..++++++|+..++. .+..+... .++..+...+.+ .+..++..+..++.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788999999999999988 56655432 233333333322 2455666777778888763210 00 1
Q ss_pred CCChHHHHHHhhC---------CCHHHHHHHHHHHHHHhcCCH
Q 006099 559 AEAVPVLVEVIGN---------GSPRNRENAAAVLVHLCAGDQ 592 (661)
Q Consensus 559 ~g~i~~Lv~lL~~---------~~~~~ke~A~~~L~~L~~~~~ 592 (661)
......+++.+.. .+++....++.+|++|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2234556665552 255667777788888876443
No 239
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.86 E-value=36 Score=32.89 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCChHHHHHHHHHHHhccCCCc-chhHhhhCCChHHHHHHHcc
Q 006099 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAVTALLNLSICED-NKGSIVSSGAVPSIVHVLRI 448 (661)
Q Consensus 371 ~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~i~~~A~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~ 448 (661)
+.-++..+|.+..+.+.+ +.+..++. .+.+.++..+.-+++++.|+-.++. ++..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 455666666665433321 22222222 2334567888999999999988877 56666544334445554422
Q ss_pred --------CCHHHHHHHHHHHHHcccCCch-hhhhhhcCCcHHHHHhhhc---------CCHHHHHHHHHHHHHhhccc
Q 006099 449 --------GSMEARENAAATLFSLSVIDEN-KVTIGASGAIPPLVTLLSE---------GTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 449 --------~~~e~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~nL~~~~ 509 (661)
.+..++..++..++|++..... +. .......+++.+.. .+.+....++.||++|...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 1446777888888999864211 11 12233455555552 36778888899999998644
No 240
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.63 E-value=10 Score=27.09 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.2
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 31 e~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 31 KDIPDDWVCPLCGV 44 (54)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCcCCCC
Confidence 47899999999975
No 241
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.44 E-value=14 Score=28.79 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.2
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999985
No 242
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.28 E-value=21 Score=30.38 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCCccCcCCccccc---CCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMK---DPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~---dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++-|.|..|...+. .+....-|..||..+..+.+. ....|+.|+.++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 46799999999985 366677899999999887663 11279999988764
No 243
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.71 E-value=13 Score=26.33 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=12.1
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 47899999999975
No 244
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.29 E-value=93 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=18.8
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l 306 (661)
+..+.|++|+.+... .-...||.|+.+-
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EAPEYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CCCSBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCH
Confidence 456889988877642 1234799998654
No 245
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.20 E-value=13 Score=26.66 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=12.1
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 46899999999975
No 246
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=31.28 E-value=3.3e+02 Score=28.23 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchHHHHHc-CChHHHHhcccC--------CCccHHHHHHHHHHHhcCChhh-HHHHHh
Q 006099 489 EGTQRGKKDAATALFNLCIYQGNKGKAVRA-GVVPTLMHLLTE--------PGGGMVDEALAILAILSSHPEG-KAAIGA 558 (661)
Q Consensus 489 ~~~~~~~~~a~~aL~nL~~~~~~~~~iv~~-g~v~~Lv~lL~~--------~~~~~~~~al~~L~~L~~~~~~-~~~i~~ 558 (661)
+.++..+..++++++||..++.....++.. .....++..+.. .+..++..+..++.|++..-.. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 456778899999999999988744444422 223444444321 2345666666777788864211 00 1
Q ss_pred CCChHHHHHHhh---------CCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006099 559 AEAVPVLVEVIG---------NGSPRNRENAAAVLVHLCAGDQQYLAE 597 (661)
Q Consensus 559 ~g~i~~Lv~lL~---------~~~~~~ke~A~~~L~~L~~~~~~~~~~ 597 (661)
...++.+++.+. ..+++....++.+|.+|...++.....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~ 397 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF 397 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 234456666665 236777888888999988766544433
No 247
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.45 E-value=66 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~~ 293 (661)
++-|.|..|...|.+ +....-|..||+.|..+.+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 356999999988864 34556688999999988886
No 248
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.41 E-value=13 Score=21.70 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=9.2
Q ss_pred ccCcCCccccc
Q 006099 262 FRCPISLELMK 272 (661)
Q Consensus 262 f~CpIc~~~m~ 272 (661)
..||+|.+.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 47999999884
No 249
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.36 E-value=77 Score=29.68 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=53.6
Q ss_pred ChHHHHHHhhCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006099 561 AVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQQ-YLAEAKELGVMGPLVDLAQNG-TDRGKRKAAQLLERMSR 631 (661)
Q Consensus 561 ~i~~Lv~lL~~~~~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~~-~~~~k~~A~~lL~~L~~ 631 (661)
++..|..-|.++++.++..|+.+|-.+..+.+. ....+....++..|..++.+. +..+++++..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 345666777889999999999999998877653 445565556777888877654 67889998888877664
No 250
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.26 E-value=51 Score=29.36 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
++-|.|..|...+.+-....-|..||..|..+-+. ..|..|+..+...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 46799999999887654456689999999877653 5788888877543
No 251
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.25 E-value=16 Score=27.70 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=12.2
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 46899999999976
No 252
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.64 E-value=21 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHh
Q 006099 282 TYERSCIEKWLEA 294 (661)
Q Consensus 282 t~~r~~I~~w~~~ 294 (661)
-|||.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 253
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.54 E-value=14 Score=33.97 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCCccCcCCcccccC---CeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKD---PVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~d---Pv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++-|.|..|...|.+ +....-|..||..|..+.+. ....|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCccccCCCcccc
Confidence 467999999998874 66677789999999887663 11269999887764
No 254
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=29.43 E-value=36 Score=30.85 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcCC
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTST 309 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~~ 309 (661)
++-|.|..|...|.+.....-|..||..|..+. ....|..|+.++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~---f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR---FGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT---TSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCccccc---cccccccCCCccCCC
Confidence 456888888888765434456788998887654 346799998877643
No 255
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.40 E-value=22 Score=28.55 Aligned_cols=13 Identities=38% Similarity=1.060 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHh
Q 006099 282 TYERSCIEKWLEA 294 (661)
Q Consensus 282 t~~r~~I~~w~~~ 294 (661)
.|||.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999983
No 256
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=29.04 E-value=2.8e+02 Score=28.10 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchHHHHH-----cCChHHHHhcccC----CCccHHHHHHHHHHHhcCChhhHHHHHhC
Q 006099 489 EGTQRGKKDAATALFNLCIYQGNKGKAVR-----AGVVPTLMHLLTE----PGGGMVDEALAILAILSSHPEGKAAIGAA 559 (661)
Q Consensus 489 ~~~~~~~~~a~~aL~nL~~~~~~~~~iv~-----~g~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~~~~~~~i~~~ 559 (661)
+..+..+..++++++|+-.++.....++. ..++..+...+.. .+..++..+..++.|++..-... -.+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~--~~~~ 287 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG--NSDL 287 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT--CSCT
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc--cchH
Confidence 45678889999999999998874333332 2233333333321 23456666667777888642110 0012
Q ss_pred CChHHHHHHhh---------CCCHHHHHHHHHHHHHHhcCCHHHH
Q 006099 560 EAVPVLVEVIG---------NGSPRNRENAAAVLVHLCAGDQQYL 595 (661)
Q Consensus 560 g~i~~Lv~lL~---------~~~~~~ke~A~~~L~~L~~~~~~~~ 595 (661)
..++.+++.+. ..+++....++.+|++|...++...
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 34456666665 2467788888889999887555433
No 257
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.04 E-value=20 Score=28.36 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=12.2
Q ss_pred CCCCCCccCcCCcc
Q 006099 256 PVIPDDFRCPISLE 269 (661)
Q Consensus 256 ~~~p~~f~CpIc~~ 269 (661)
.++|+++.||+|..
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999985
No 258
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.03 E-value=2.6 Score=33.78 Aligned_cols=40 Identities=30% Similarity=0.564 Sum_probs=25.0
Q ss_pred ccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 262 FRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 262 f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
..||.|...|.. .-|+.+|..|-..+ . ....||.|+++|.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f-~-~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFI-E-MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEE-E-EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchh-h-ccccCcchhhHHH
Confidence 689999988852 12333365553221 1 2357999999886
No 259
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.88 E-value=48 Score=24.40 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=24.5
Q ss_pred CCCccCcCCcccccCC-eecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP-v~~~cg~t~~r~~I~~w~~ 293 (661)
++-|.|..|...|.+- ....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4568888888877653 3334677888888877664
No 260
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.53 E-value=1.7e+02 Score=30.35 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHH-HhhCCCChHHHHHHHHHHHhccCCCcc-hhHhhhCCChHHHHHHHcc
Q 006099 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLV-GLLSTPDSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLRI 448 (661)
Q Consensus 371 ~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~s~~~~i~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~ 448 (661)
+.-++..||.+..+.+.+ +.+..++ ..+.+..+..+..+++++.|+-.+... +..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 444566666655433221 1222233 233345678888999999999888774 4444333234555655521
Q ss_pred --------CCHHHHHHHHHHHHHcccCCch-hhhhhhcCCcHHHHHhhh---------cCCHHHHHHHHHHHHHhhccc
Q 006099 449 --------GSMEARENAAATLFSLSVIDEN-KVTIGASGAIPPLVTLLS---------EGTQRGKKDAATALFNLCIYQ 509 (661)
Q Consensus 449 --------~~~e~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~~ 509 (661)
.+..++..++.+++|++..... +. .......+++.+. ..+.+....++.||.+|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1346777888888999865211 11 1233345666665 247788899999999998643
No 261
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=52 Score=24.71 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=33.0
Q ss_pred CCCccCcCCcccccC-CeecCCCccccH-HHHHHHHHhCCCCCCCCCCCC
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYER-SCIEKWLEAGHRTCPKTQQTL 306 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r-~~I~~w~~~~~~~cP~~~~~l 306 (661)
++-|.|..|...+.+ +....-|..||. .|..+.+ ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 456999999998876 555667889999 5876644 45687776543
No 262
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=24.87 E-value=4.4e+02 Score=27.84 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=81.2
Q ss_pred hHHHHHHH-ccC-----CHHHHHHHHHHHHHcccCCchhhhhhhcCCcHHHHHhhhcCCHHHHHHHHHHHHHhhcccCch
Q 006099 439 VPSIVHVL-RIG-----SMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNK 512 (661)
Q Consensus 439 i~~Lv~lL-~~~-----~~e~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 512 (661)
++.+-++| .++ +++..-.....+...+..+ .+.+-=.+..+++-|.++.+.....||.++. ....+
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~Fd----~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk 146 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADFD----DVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPK 146 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCHH----HHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSG
T ss_pred HHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCHH----HHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCch
Confidence 34555666 221 3444333334444333322 3444456788888999988889999998887 55667
Q ss_pred HHHHHcCChHHHHhcccCCCcc---HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHhhCCCHHH
Q 006099 513 GKAVRAGVVPTLMHLLTEPGGG---MVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRN 576 (661)
Q Consensus 513 ~~iv~~g~v~~Lv~lL~~~~~~---~~~~al~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 576 (661)
..+...+++..|+.++.+.+.. +....=.++..|++++-.|..+.+ ..+|.+..+=+..++..
T Consensus 147 ~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~-nnl~lL~~vK~~~~~i~ 212 (500)
T 3vld_A 147 GLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFD-NNLPYLVSVKGRMETVS 212 (500)
T ss_dssp GGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHHHCCHHH
T ss_pred hHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH-HhHHHHHHHhcCCCcee
Confidence 7778889999999999775433 666666777788777655655554 35555554444444433
No 263
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.73 E-value=82 Score=32.08 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHH-hhCCCChHHHHHHHHHHHhccCCCcc-hhHhhhCCChHHHHHHHc-
Q 006099 371 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRTQEHAVTALLNLSICEDN-KGSIVSSGAVPSIVHVLR- 447 (661)
Q Consensus 371 ~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~i~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~- 447 (661)
+.-++..||.+..+.+.+ +.+..++. .+.+..+..+..+++++.|+-.+... +..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 556777777776543321 22333332 33345678888999999999888764 444432212334444431
Q ss_pred ---c----CCHHHHHHHHHHHHHcccCCch-hhhhhhcCCcHHHHHhhh---------cCCHHHHHHHHHHHHHhhcc
Q 006099 448 ---I----GSMEARENAAATLFSLSVIDEN-KVTIGASGAIPPLVTLLS---------EGTQRGKKDAATALFNLCIY 508 (661)
Q Consensus 448 ---~----~~~e~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~ 508 (661)
+ .+..++..++.+++|++..... +. .......+++.+. ..+.+....++.||++|...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1 1346777888888999865211 11 1233456666666 24788889999999999863
No 264
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=24.33 E-value=28 Score=23.88 Aligned_cols=40 Identities=5% Similarity=0.107 Sum_probs=22.4
Q ss_pred CccCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
.|.|++|...+.....+ ..-+..........|+.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhC
Confidence 47899998888654221 11112122223467999987664
No 265
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.30 E-value=1e+02 Score=23.90 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCccCcCCcccccCCeecCCCccccHHHHHHHHH----hCCCCCCCCCCCCc
Q 006099 259 PDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLE----AGHRTCPKTQQTLT 307 (661)
Q Consensus 259 p~~f~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~----~~~~~cP~~~~~l~ 307 (661)
.+.+.|++|...|... ..+..... ...+.|+.|++.+.
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 4458999999888653 33344443 22357999988765
No 266
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.61 E-value=47 Score=28.01 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=26.9
Q ss_pred CccCcCCcccccCCe-ecCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q 006099 261 DFRCPISLELMKDPV-IVSTGQTYERSCIEKWLEAGHRTCPKTQQTLT 307 (661)
Q Consensus 261 ~f~CpIc~~~m~dPv-~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~ 307 (661)
...|+-|.+...+.. +..-|..|...| +.|..|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 357999988777763 556676665554 57888888885
No 267
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=60 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=24.6
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHHH
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWL 292 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~ 292 (661)
++-|.|..|...+.+ +....-|..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 456889999888754 4445567889988886654
No 268
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.32 E-value=63 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.481 Sum_probs=20.3
Q ss_pred cCcCCcccccCCeecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 263 RCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 263 ~CpIc~~~m~dPv~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
.|+-|.+...+.++..-|..|...| +.|..|+.+|..
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 63 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAY 63 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CCccCCCEecceEEEECCccccccC---------CccCCCCCCCCC
Confidence 4666666555555555555444333 356666666553
No 269
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=22.25 E-value=35 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=17.5
Q ss_pred Cc-cCcCCccccc-C----CeecC-CCccccHHHHHHH
Q 006099 261 DF-RCPISLELMK-D----PVIVS-TGQTYERSCIEKW 291 (661)
Q Consensus 261 ~f-~CpIc~~~m~-d----Pv~~~-cg~t~~r~~I~~w 291 (661)
.| -||-|..++. + +|.-+ ||+.||..|-..|
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 45 4998877553 2 23333 6666666655444
No 270
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.75 E-value=1.7e+02 Score=25.72 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=51.1
Q ss_pred ChHHHHHHhh-CCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHH-HHHhhhc---CChHHHHHHHHHHHHHHhh
Q 006099 561 AVPVLVEVIG-NGSPRNRENAAAVLVHLCAGD-QQYLAEAKELGVMGP-LVDLAQN---GTDRGKRKAAQLLERMSRF 632 (661)
Q Consensus 561 ~i~~Lv~lL~-~~~~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~-L~~ll~~---~~~~~k~~A~~lL~~L~~~ 632 (661)
++..|..-|+ ++++.++..|+.+|-.+..+. +.....+....++.. |+.++.. ....+++++..++..-...
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3556777776 478999999998888877664 455556666667777 7777742 2458899888888776653
No 271
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.67 E-value=65 Score=25.65 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCCccCcCCcccccCC-eecCCCccccHHHHHHHHHhCCCCCCCCCCCCcC
Q 006099 259 PDDFRCPISLELMKDP-VIVSTGQTYERSCIEKWLEAGHRTCPKTQQTLTS 308 (661)
Q Consensus 259 p~~f~CpIc~~~m~dP-v~~~cg~t~~r~~I~~w~~~~~~~cP~~~~~l~~ 308 (661)
++-|.|..|...+.+. ....-|..||..+..+. ....|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCcccc
Confidence 4569999999988654 44566889999987543 45689999888763
No 272
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.62 E-value=87 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=26.4
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w~~ 293 (661)
++-|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 356899999988864 34456688899999887764
No 273
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.59 E-value=1.9e+02 Score=26.08 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHh
Q 006099 120 LDISDEVKEQVELVLSQFRRAKGRVDAPDVELYEELLSLYNKNNDVTPDPAVLRGLAEK 178 (661)
Q Consensus 120 ~~~s~~v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 178 (661)
++++++=++++..++.+++.........-.....++..++. ..+||.+.++.++++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~---a~~~DeakI~aL~~E 121 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT---ASSPDTAKINAVAKE 121 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHH
Confidence 68999999999999888775433221111222333333333 234676666666544
No 274
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=20.55 E-value=2.7e+02 Score=29.45 Aligned_cols=103 Identities=19% Similarity=0.087 Sum_probs=67.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHhCCHHHHHHhhCCCChH---HHHHHHHHHHhccCCCcch
Q 006099 354 TKIEILLCKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR---TQEHAVTALLNLSICEDNK 430 (661)
Q Consensus 354 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~---i~~~A~~~L~nLs~~~~~k 430 (661)
-.+++++..|.+++......|++.|. ....+..++..+.+..|+.++-..+.. +....=.++..|+.++-.|
T Consensus 116 ysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLir 190 (500)
T 3vld_A 116 YSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIR 190 (500)
T ss_dssp SCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHH
Confidence 45789999999999988988888887 455677888889999999988765432 4333334444566555456
Q ss_pred hHhhhCCChHHHHHHHccCCHHHHHHHHHHHH
Q 006099 431 GSIVSSGAVPSIVHVLRIGSMEARENAAATLF 462 (661)
Q Consensus 431 ~~i~~~g~i~~Lv~lL~~~~~e~~~~a~~~L~ 462 (661)
..+.+ ..++.+..+=++.++-....-...+.
T Consensus 191 rril~-nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 191 RRLFD-NNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp HHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 66664 35566666555555544443343333
No 275
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.40 E-value=51 Score=23.88 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=20.5
Q ss_pred CCCccCcCCcccccC-CeecCCCccccHHHHHHH
Q 006099 259 PDDFRCPISLELMKD-PVIVSTGQTYERSCIEKW 291 (661)
Q Consensus 259 p~~f~CpIc~~~m~d-Pv~~~cg~t~~r~~I~~w 291 (661)
++-|.|..|...+.+ +....-|..||+.|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 345777777776654 334455677777776544
No 276
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=50 Score=24.71 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCCccCcCCccccc--CCeecCCCccccHHHHHHHHH
Q 006099 259 PDDFRCPISLELMK--DPVIVSTGQTYERSCIEKWLE 293 (661)
Q Consensus 259 p~~f~CpIc~~~m~--dPv~~~cg~t~~r~~I~~w~~ 293 (661)
++-|.|..|...+. +.....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 45689999988886 344555677888888776544
Done!