Query 006102
Match_columns 661
No_of_seqs 251 out of 2523
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 4.7E-79 1E-83 688.0 54.7 549 21-621 4-557 (557)
2 KOG1286 Amino acid transporter 100.0 6.2E-65 1.3E-69 562.0 27.5 508 45-620 26-553 (554)
3 PRK11357 frlA putative fructos 100.0 6.2E-55 1.4E-59 482.9 43.7 428 45-621 4-441 (445)
4 PRK11387 S-methylmethionine tr 100.0 1.7E-54 3.8E-59 482.2 47.2 368 45-432 10-395 (471)
5 PRK15049 L-asparagine permease 100.0 3.8E-54 8.2E-59 481.2 48.8 371 45-432 24-409 (499)
6 PRK10644 arginine:agmatin anti 100.0 6.4E-53 1.4E-57 466.7 48.4 422 46-621 5-435 (445)
7 TIGR00909 2A0306 amino acid tr 100.0 1.1E-52 2.3E-57 463.2 47.4 427 47-614 1-429 (429)
8 PRK10836 lysine transporter; P 100.0 4.1E-53 8.9E-58 473.1 44.4 370 44-432 10-402 (489)
9 PRK10746 putative transport pr 100.0 1.2E-52 2.6E-57 465.2 47.3 369 45-432 6-391 (461)
10 PRK10249 phenylalanine transpo 100.0 6.8E-53 1.5E-57 467.3 43.8 370 43-431 15-397 (458)
11 PRK10655 potE putrescine trans 100.0 1.4E-52 2.9E-57 463.4 46.0 368 47-432 4-379 (438)
12 PRK10580 proY putative proline 100.0 3.7E-52 8E-57 462.0 47.8 370 44-432 4-388 (457)
13 TIGR00908 2A0305 ethanolamine 100.0 4.2E-52 9.2E-57 460.0 47.4 425 45-621 3-436 (442)
14 PRK10435 cadB lysine/cadaverin 100.0 3.7E-52 8.1E-57 458.9 45.3 362 47-427 3-377 (435)
15 COG0833 LysP Amino acid transp 100.0 7.1E-53 1.5E-57 449.9 34.5 369 46-432 41-431 (541)
16 PRK10238 aromatic amino acid t 100.0 3E-51 6.5E-56 454.0 46.1 368 46-432 9-389 (456)
17 PRK11049 D-alanine/D-serine/gl 100.0 5.2E-51 1.1E-55 453.9 46.9 370 44-432 15-402 (469)
18 TIGR01773 GABAperm gamma-amino 100.0 3E-51 6.6E-56 454.3 44.9 369 45-432 8-391 (452)
19 TIGR00905 2A0302 transporter, 100.0 9.9E-50 2.2E-54 444.2 46.4 370 47-430 5-385 (473)
20 TIGR00911 2A0308 L-type amino 100.0 5.3E-50 1.1E-54 449.8 44.0 390 29-432 23-418 (501)
21 PRK10197 gamma-aminobutyrate t 100.0 7.2E-50 1.6E-54 441.7 43.7 354 59-431 2-370 (446)
22 TIGR00913 2A0310 amino acid pe 100.0 4E-49 8.6E-54 440.6 45.6 366 48-432 1-395 (478)
23 COG1113 AnsP Gamma-aminobutyra 100.0 1.3E-49 2.8E-54 416.8 37.4 370 44-432 8-392 (462)
24 PRK11021 putative transporter; 100.0 1.1E-48 2.4E-53 428.5 46.6 355 51-428 1-361 (410)
25 TIGR00930 2a30 K-Cl cotranspor 100.0 4.6E-49 9.9E-54 462.5 42.9 467 47-660 74-579 (953)
26 KOG1287 Amino acid transporter 100.0 1.4E-49 3E-54 423.7 32.2 374 45-432 8-387 (479)
27 TIGR03810 arg_ornith_anti argi 100.0 6.2E-47 1.4E-51 421.2 46.5 368 49-430 1-381 (468)
28 TIGR00907 2A0304 amino acid pe 100.0 3E-45 6.6E-50 409.6 44.8 380 42-429 5-409 (482)
29 TIGR03428 ureacarb_perm permea 100.0 1.1E-43 2.3E-48 396.0 46.7 384 41-430 5-403 (475)
30 TIGR00910 2A0307_GadC glutamat 100.0 3.8E-42 8.2E-47 385.0 46.8 369 48-432 3-391 (507)
31 TIGR03813 put_Glu_GABA_T putat 100.0 4.4E-42 9.5E-47 383.1 44.2 371 49-432 1-388 (474)
32 COG0531 PotE Amino acid transp 100.0 6.5E-42 1.4E-46 381.1 44.7 377 44-432 7-392 (466)
33 PF13520 AA_permease_2: Amino 100.0 8.7E-42 1.9E-46 376.1 33.8 366 51-433 1-379 (426)
34 KOG1289 Amino acid transporter 100.0 2.3E-41 5E-46 360.6 33.2 387 34-429 33-444 (550)
35 PRK15238 inner membrane transp 100.0 4.1E-39 9E-44 360.9 45.7 373 47-429 5-422 (496)
36 PF00324 AA_permease: Amino ac 100.0 2.8E-43 6.1E-48 393.3 11.8 364 57-432 3-395 (478)
37 TIGR00837 araaP aromatic amino 100.0 6.4E-31 1.4E-35 285.4 32.7 345 58-430 4-357 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 1.3E-23 2.9E-28 226.9 22.7 373 50-427 113-592 (1075)
39 TIGR00912 2A0309 spore germina 99.9 6.8E-21 1.5E-25 205.2 37.7 286 50-360 2-294 (359)
40 KOG1288 Amino acid transporter 99.9 8.5E-22 1.8E-26 211.8 23.1 378 50-435 66-478 (945)
41 PHA02764 hypothetical protein; 99.9 2.8E-19 6.1E-24 177.9 26.4 278 44-382 7-285 (399)
42 PF13906 AA_permease_C: C-term 99.8 1.3E-20 2.7E-25 139.9 5.7 51 569-619 1-51 (51)
43 TIGR00796 livcs branched-chain 99.8 9.9E-17 2.1E-21 171.3 33.7 336 61-437 5-363 (378)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 7.4E-16 1.6E-20 166.9 40.7 324 50-403 2-336 (394)
45 TIGR00814 stp serine transport 99.8 5E-16 1.1E-20 168.0 33.2 286 57-364 9-313 (397)
46 PRK10483 tryptophan permease; 99.8 2.1E-15 4.5E-20 162.2 34.4 355 48-431 8-372 (414)
47 PRK09664 tryptophan permease T 99.8 5.7E-15 1.2E-19 158.7 36.8 353 52-431 10-373 (415)
48 KOG2083 Na+/K+ symporter [Inor 99.7 2.2E-17 4.7E-22 177.4 16.2 369 49-432 28-418 (643)
49 PRK15132 tyrosine transporter 99.7 2.9E-14 6.3E-19 154.0 38.2 344 52-428 4-358 (403)
50 COG0814 SdaC Amino acid permea 99.7 1.3E-13 2.9E-18 150.4 32.9 342 47-414 5-357 (415)
51 PF03845 Spore_permease: Spore 99.6 3.4E-12 7.5E-17 135.3 34.0 286 50-361 1-291 (320)
52 PRK13629 threonine/serine tran 99.6 1.6E-11 3.4E-16 132.4 34.9 294 58-364 26-348 (443)
53 PF01235 Na_Ala_symp: Sodium:a 99.3 1.7E-09 3.8E-14 116.2 31.1 350 48-430 16-392 (416)
54 COG1115 AlsT Na+/alanine sympo 99.3 6.1E-09 1.3E-13 110.7 32.5 350 47-429 59-435 (452)
55 TIGR00835 agcS amino acid carr 99.2 5.1E-08 1.1E-12 105.5 32.8 345 49-429 45-417 (425)
56 PTZ00206 amino acid transporte 99.2 1.6E-07 3.4E-12 104.7 35.8 251 52-310 61-318 (467)
57 KOG1303 Amino acid transporter 99.2 3.8E-08 8.3E-13 107.2 30.0 281 47-350 34-323 (437)
58 PLN03074 auxin influx permease 99.0 8E-07 1.7E-11 98.9 35.0 234 51-309 46-292 (473)
59 KOG1304 Amino acid transporter 98.9 2.8E-06 6E-11 91.6 31.1 349 48-432 44-415 (449)
60 COG3949 Uncharacterized membra 98.9 2.9E-06 6.2E-11 87.0 28.3 266 58-353 10-280 (349)
61 PRK11375 allantoin permease; P 98.7 9.5E-05 2.1E-09 82.8 37.0 328 47-400 23-366 (484)
62 PF01490 Aa_trans: Transmembra 98.7 7.8E-09 1.7E-13 113.3 2.3 359 49-431 1-376 (409)
63 PRK09442 panF sodium/panthothe 98.5 0.0044 9.4E-08 69.7 41.8 288 48-357 40-346 (483)
64 TIGR00813 sss transporter, SSS 98.4 0.0015 3.2E-08 71.8 35.7 289 49-358 3-322 (407)
65 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.0026 5.6E-08 70.7 37.9 248 47-304 10-262 (442)
66 TIGR02119 panF sodium/pantothe 98.4 0.0075 1.6E-07 67.6 41.4 287 48-357 39-345 (471)
67 COG0733 Na+-dependent transpor 98.3 0.00078 1.7E-08 72.6 28.7 295 52-351 10-324 (439)
68 COG1457 CodB Purine-cytosine p 98.3 0.003 6.4E-08 68.9 32.6 238 85-355 54-294 (442)
69 COG1953 FUI1 Cytosine/uracil/t 98.3 0.0073 1.6E-07 66.1 35.0 366 47-432 37-418 (497)
70 PRK11017 codB cytosine permeas 98.1 0.026 5.7E-07 61.9 42.9 221 48-295 8-229 (404)
71 PF01566 Nramp: Natural resist 98.1 0.0042 9.2E-08 67.0 28.8 255 81-362 11-285 (358)
72 PF00474 SSF: Sodium:solute sy 98.0 0.00084 1.8E-08 73.7 23.2 294 48-364 5-323 (406)
73 PRK12488 acetate permease; Pro 97.9 0.076 1.7E-06 60.7 37.9 155 48-222 66-222 (549)
74 COG0591 PutP Na+/proline sympo 97.9 0.034 7.3E-07 62.6 33.5 109 48-160 37-152 (493)
75 TIGR02358 thia_cytX probable h 97.9 0.061 1.3E-06 58.6 36.0 243 83-358 29-272 (386)
76 TIGR02121 Na_Pro_sym sodium/pr 97.9 0.085 1.8E-06 59.4 42.4 289 48-358 35-346 (487)
77 TIGR02711 symport_actP cation/ 97.8 0.14 3.1E-06 58.5 38.7 324 48-398 66-422 (549)
78 PRK00701 manganese transport p 97.7 0.11 2.4E-06 57.6 33.0 83 64-151 47-131 (439)
79 KOG1305 Amino acid transporter 97.7 0.0034 7.4E-08 68.4 20.3 250 48-310 3-256 (411)
80 PRK09395 actP acetate permease 97.7 0.2 4.3E-06 57.4 39.5 154 48-221 68-223 (551)
81 PF05525 Branch_AA_trans: Bran 97.7 0.12 2.5E-06 56.7 31.1 315 64-416 16-345 (427)
82 PRK15419 proline:sodium sympor 97.6 0.19 4.2E-06 56.7 38.7 287 48-357 39-352 (502)
83 TIGR03648 Na_symport_lg probab 97.5 0.28 6.2E-06 56.1 35.5 148 48-217 31-182 (552)
84 PRK15433 branched-chain amino 97.3 0.34 7.4E-06 53.1 28.6 271 64-360 21-308 (439)
85 PRK10484 putative transporter; 97.3 0.55 1.2E-05 53.4 45.5 297 48-358 37-355 (523)
86 PF02133 Transp_cyt_pur: Perme 97.1 0.0082 1.8E-07 66.6 15.1 172 47-223 5-179 (440)
87 COG1914 MntH Mn2+ and Fe2+ tra 97.0 0.76 1.6E-05 50.2 31.5 40 317-356 269-311 (416)
88 PF02028 BCCT: BCCT family tra 95.8 4.2 9E-05 45.6 31.5 88 331-427 390-482 (485)
89 COG4147 DhlC Predicted symport 95.8 4 8.7E-05 44.7 26.1 298 81-411 75-422 (529)
90 PF00209 SNF: Sodium:neurotran 95.4 2.2 4.8E-05 48.5 22.1 102 193-303 192-303 (523)
91 PLN00151 potassium transporter 95.0 9.7 0.00021 44.8 26.9 219 180-417 273-508 (852)
92 COG1114 BrnQ Branched-chain am 94.5 8.5 0.00018 41.7 28.1 277 59-358 13-304 (431)
93 KOG1286 Amino acid transporter 94.0 9.7 0.00021 43.5 22.3 49 182-230 156-204 (554)
94 PLN00149 potassium transporter 93.9 9.1 0.0002 44.9 22.0 221 183-417 200-435 (779)
95 PRK09950 putative transporter; 93.4 16 0.00036 41.1 29.3 104 318-428 390-497 (506)
96 KOG2466 Uridine permease/thiam 92.2 19 0.00041 39.7 19.8 310 47-372 52-380 (572)
97 PLN00148 potassium transporter 92.0 30 0.00064 40.8 22.4 218 180-416 196-430 (785)
98 TIGR00794 kup potassium uptake 90.9 31 0.00067 40.2 21.1 225 179-419 166-404 (688)
99 PF02705 K_trans: K+ potassium 90.9 33 0.00071 38.9 29.9 227 178-421 129-369 (534)
100 PRK10745 trkD potassium transp 89.7 31 0.00066 39.6 19.5 220 179-418 141-377 (622)
101 PLN00150 potassium ion transpo 87.9 64 0.0014 38.1 27.7 221 180-417 213-448 (779)
102 KOG3660 Sodium-neurotransmitte 87.1 66 0.0014 37.4 29.0 58 52-109 39-100 (629)
103 TIGR01197 nramp NRAMP (natural 86.3 56 0.0012 35.7 35.1 42 319-360 282-323 (390)
104 KOG4303 Vesicular inhibitory a 83.6 2.2 4.7E-05 44.7 5.7 210 47-280 113-333 (524)
105 COG4145 PanF Na+/panthothenate 83.3 70 0.0015 34.4 26.9 278 48-355 38-342 (473)
106 PRK09928 choline transport pro 81.8 1.1E+02 0.0024 35.7 27.2 101 319-426 398-501 (679)
107 COG1292 BetT Choline-glycine b 81.6 99 0.0021 34.9 27.0 100 323-429 395-497 (537)
108 PF02990 EMP70: Endomembrane p 81.1 76 0.0016 36.1 17.6 35 401-435 366-401 (521)
109 KOG3659 Sodium-neurotransmitte 79.9 55 0.0012 37.3 15.2 126 179-305 252-379 (629)
110 PTZ00206 amino acid transporte 70.9 48 0.001 37.1 12.4 56 316-371 120-175 (467)
111 PF02554 CstA: Carbon starvati 66.4 1.9E+02 0.0042 31.1 22.1 100 51-153 52-153 (376)
112 TIGR00842 bcct choline/carniti 64.5 2.4E+02 0.0052 31.5 28.5 45 318-365 344-388 (453)
113 PRK03356 L-carnitine/gamma-but 63.6 2.6E+02 0.0057 31.6 30.3 102 318-426 393-497 (504)
114 PF05297 Herpes_LMP1: Herpesvi 49.5 5.3 0.00012 40.5 -0.1 28 587-614 156-185 (381)
115 PRK15015 carbon starvation pro 38.8 7E+02 0.015 29.2 32.1 99 54-154 86-185 (701)
116 KOG1278 Endosomal membrane pro 30.4 3.6E+02 0.0078 30.7 10.0 34 577-610 410-449 (628)
117 TIGR02235 menA_cyano-plnt 1,4- 28.9 5.8E+02 0.012 26.5 11.1 29 93-130 112-140 (285)
118 TIGR02230 ATPase_gene1 F0F1-AT 28.3 1.8E+02 0.0039 25.2 5.9 49 47-97 38-88 (100)
119 COG3949 Uncharacterized membra 27.3 7.8E+02 0.017 26.2 11.6 108 288-414 40-148 (349)
120 PF09973 DUF2208: Predicted me 26.0 73 0.0016 32.0 3.6 62 576-637 5-66 (233)
121 PF06942 GlpM: GlpM protein; 25.6 2.2E+02 0.0048 24.8 5.9 45 568-612 22-69 (107)
122 PRK07419 1,4-dihydroxy-2-napht 24.3 6E+02 0.013 26.7 10.3 16 114-129 137-152 (304)
123 COG0814 SdaC Amino acid permea 24.2 8.9E+02 0.019 26.6 12.1 84 278-361 31-116 (415)
124 COG1575 MenA 1,4-dihydroxy-2-n 23.0 8.9E+02 0.019 25.4 13.4 73 48-136 89-162 (303)
125 PF05525 Branch_AA_trans: Bran 22.2 1.1E+03 0.024 26.1 17.7 74 117-207 264-337 (427)
126 PRK00968 tetrahydromethanopter 21.9 2E+02 0.0044 28.3 5.5 33 270-302 202-235 (240)
127 KOG1278 Endosomal membrane pro 21.4 1.3E+03 0.027 26.6 14.2 32 400-431 431-462 (628)
128 COG4060 MtrD Tetrahydromethano 21.2 1.1E+02 0.0023 29.1 3.3 32 272-303 194-226 (230)
129 TIGR00835 agcS amino acid carr 20.6 1.2E+03 0.025 25.9 14.2 105 252-363 50-159 (425)
130 PF12270 Cyt_c_ox_IV: Cytochro 20.6 6.7E+02 0.015 23.0 11.5 19 535-553 110-128 (137)
131 PRK14740 kdbF potassium-transp 20.5 1.7E+02 0.0037 19.1 3.1 23 592-616 1-23 (29)
132 COG3086 RseC Positive regulato 20.4 1.5E+02 0.0033 27.4 4.1 54 573-628 80-136 (150)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=4.7e-79 Score=688.00 Aligned_cols=549 Identities=41% Similarity=0.705 Sum_probs=434.8
Q ss_pred hhhcccccccccCCcccCCCcccccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 006102 21 GCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSA 100 (661)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~a 100 (661)
..+.+++.|||+.++++. ++++++|+++.+|++++++|.++|+|+|++++.++...+||+++++|+++++.+++.+
T Consensus 4 ~~~~~~~~r~k~~~~~~~----~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~a 79 (557)
T TIGR00906 4 LTFARCLIRRKIVDLDSR----EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSG 79 (557)
T ss_pred HHHHHHHhccCCcccccc----cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 346678999999976211 2345999999999999999999999999999988777899999999999999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-h-hhHhhhccCCCCc
Q 006102 101 FCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS-L-PFFMARQQIPGLG 178 (661)
Q Consensus 101 l~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~-~-p~~~~~~~~~~~~ 178 (661)
+||+|+++++|++||.|.|+++.+||.+||++||+++++|....++++.++++|+..+++.... . ..... ...++..
T Consensus 80 l~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~ 158 (557)
T TIGR00906 80 FCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLA 158 (557)
T ss_pred HHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999988753110 0 00000 0112222
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC--CCCCCCCCchhHHHHHHHH
Q 006102 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPTGYFPFGVNGMLAGSA 256 (661)
Q Consensus 179 ~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~--~~~~~~~p~g~~gi~~~~~ 256 (661)
...++++++++++++++|.+|+|.++++|++++.+|+++++++++.++.+.+.+||+.. .+++++.|+|+.|++.++.
T Consensus 159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~ 238 (557)
T TIGR00906 159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA 238 (557)
T ss_pred ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999887777777532 1234688999999999999
Q ss_pred HHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHH
Q 006102 257 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 336 (661)
Q Consensus 257 ~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~ 336 (661)
.++|+|.|||.+++++||+|||+||+|||++.++.+++++|+++++++++++|+++++.++|+..+++..|.++...++.
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~ 318 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA 318 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 006102 337 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 416 (661)
Q Consensus 337 i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y 416 (661)
++++++++++.++.+++++|++|+|||||++|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++++++|
T Consensus 319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y 398 (557)
T TIGR00906 319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCcccccccccccccc
Q 006102 417 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL 496 (661)
Q Consensus 417 ~~v~~~~i~lR~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (661)
.+++++++++|++++...+ + .+|. +|++.+...+ +...+.+.+.
T Consensus 399 ~lv~~~~l~lR~~~~~~~~--~-------------~~~~---~~~~~~~~~~------~~~~~~~~~~------------ 442 (557)
T TIGR00906 399 SLVAACVLILRYQPGLVYG--Q-------------AKDT---DEKDTLDSWV------PFTSKSESQS------------ 442 (557)
T ss_pred HHHHHHHHHhhcccccccc--c-------------cccc---cccccccccc------cccccccccc------------
Confidence 9999999999998654210 0 0000 0000000000 0000000000
Q ss_pred ccccccchhhhhHHHHHHHHHHHHH-hhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccc
Q 006102 497 NEENRRTVAGWTIMFTCIGVFVLTY-AASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVP 575 (661)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P 575 (661)
+ ....+.. ++..+++..+... ....... .++.+.++++.+++.++.+..+ ++|++.+ .+++||||++|
T Consensus 443 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~f~~p~~p 511 (557)
T TIGR00906 443 E-GFSLRTL---FSGLILGLSILTTYGRAAIAE-EAWSIALLTLFLVLFLLVVLTI--WRQPQNK----QKVAFKVPLVP 511 (557)
T ss_pred c-chhHHHH---HHHHHHHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHH--hcCCCCC----CCCCCCCCCch
Confidence 0 0000000 1111122111111 1111111 2333344444333333333333 3344432 35689999999
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhccccccc
Q 006102 576 LLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSL 621 (661)
Q Consensus 576 ~~P~~si~~n~~lm~~l~~~t~~~~~vw~~ig~~iY~~yg~~hs~~ 621 (661)
++|+++|++|+|||.+|+..||+||.+|+++|+++||+||+||||+
T Consensus 512 ~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 512 FLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 9999999999999999999999999999999999999999999974
No 2
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-65 Score=562.03 Aligned_cols=508 Identities=35% Similarity=0.549 Sum_probs=405.8
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHH
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYIC 123 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~ 123 (661)
+++||+|+++|+.++++|+++|+|+|+.+|..+.+.|||+++++|+++++.++++++||+|++.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 46999999999999999999999999999999988888899999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHH-HhhHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC-VGIKE 202 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~-~G~k~ 202 (661)
+||.+||.+||+++++|++..++.+++++.+++.+.+ .. .......+.+...+++|++++++++.++.+-. .++|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~--~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-AS--LIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cc--cccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999871 00 01111112234556778888888777766666 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---CCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG---YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~---~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~ 279 (661)
+..++++++.++++++.++++.|....+..||.. +.++++|.|+|+.|+++++..++|+|.|+|.++..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 9999999999999999999999999888778865 3456779999999999999999999999999999999999999
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCCHHHHHHH-HcCchHHH---HHHHHHHHHHHHHHHHhhhch
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFA-SHGMHWAS---YVITIGAVTALCSTLMGSILP 353 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~--~~~~~~~~~a~~-~~g~~~~~---~iv~i~~~~~~~~s~~~~~~~ 353 (661)
|++|+|+..++.+++++|++.++.+++++||++ ++++++....|. ..+..+.. .++++++++++.+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999 777776666665 44544444 599999999999999999999
Q ss_pred hhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006102 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV------SALAGMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 354 ~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~------~~L~~l~s~~~l~~y~~v~~~~i~lR 427 (661)
+||.+++||+||++||+|+++||+ |+|++|++++++.+++..+..+. ++|.++.++++++.|.+++++++++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999999 99999999999999999988876 99999999999999999999999999
Q ss_pred ccCCCCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhh
Q 006102 428 YVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGW 507 (661)
Q Consensus 428 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (661)
|..+.+.+.. + +.+..+ ...........
T Consensus 422 ~a~~~q~~~~---------------------~-------------~~~~~s------------------~~~~~gs~~~~ 449 (554)
T KOG1286|consen 422 YAMKVQGRSL---------------------D-------------ELPYKS------------------PTGPYGSYYGL 449 (554)
T ss_pred ecccccCCCc---------------------c-------------cccccC------------------CCCCchhHHHH
Confidence 9876532100 0 000000 00001111111
Q ss_pred hHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHH
Q 006102 508 TIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVY 587 (661)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~ 587 (661)
.+..++.............+.++........+...+.++..+..-..+|+++ . ++|+.|++++..|.+
T Consensus 450 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~--------~----~vp~~~~idl~~~~~ 517 (554)
T KOG1286|consen 450 LVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTN--------T----LVPLSPCIDLDTNIY 517 (554)
T ss_pred HHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecccc--------c----ccCCccceEEEecce
Confidence 1111111111111111100112222222222222223333333323333221 1 789999999999999
Q ss_pred HHhcCCHHHHH--HHHHHHHHHHHHHHh-hcccccc
Q 006102 588 LLINLGSATWA--RVSVWLIIGVLVYVF-YGRTHSS 620 (661)
Q Consensus 588 lm~~l~~~t~~--~~~vw~~ig~~iY~~-yg~~hs~ 620 (661)
+|.+++..+|. |+.+|..+|+..|+. ||+||++
T Consensus 518 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 518 LMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred eeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 99999999999 999999999999987 9999985
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6.2e-55 Score=482.89 Aligned_cols=428 Identities=24% Similarity=0.352 Sum_probs=358.0
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
++++|++++++++++++|.++|+|+|..++.++...+||. .+++|+++++.+++.++||+|+++++|++||.|.|+++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 4699999999999999999999999999998765555564 789999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 124 VGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 124 ~G~~~gfi~gw~~~-l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
+||.+||+.||..+ ..+....+..+...++|+..+++. .......++.+++++++.+|.+|+|.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---------------~~~~~~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---------------DPLLGKFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------chHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999754 445556666777777776543321 01112345667777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCch-hHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccC
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g-~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~ 281 (661)
++++|++++.+|++.++++++.++.....+++++..... ....+ +.+++.++..++|+|.|||.+++++||+|||+||
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999998888887776544444443221111 01112 5678888999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHc--CchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASH--GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 282 iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~--g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
+|||++.++.+++++|++.+.+..+..|++++. .++|+.++++.. .+++...++.+.++++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999988764 457888888764 35667778888888999999999999999999
Q ss_pred HHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 006102 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPS 438 (661)
Q Consensus 359 ~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~~ 438 (661)
++|||||.+|++|+|+|+|+++|++|++++++++.++....+++.+.++.+....+.|.+...+++++|++++.
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~------ 381 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDY------ 381 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999888754322
Q ss_pred CccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHHH
Q 006102 439 TLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFV 518 (661)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
T Consensus 382 -------------------------------------------------------------------------------- 381 (445)
T PRK11357 382 -------------------------------------------------------------------------------- 381 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHh----cCCH
Q 006102 519 LTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLI----NLGS 594 (661)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~----~l~~ 594 (661)
+++||+|..|++|++++..+++++. +.+.
T Consensus 382 -----------------------------------------------~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (445)
T PRK11357 382 -----------------------------------------------KPLWRTPAFGLMTTLAIASSLILVASTFVWAPI 414 (445)
T ss_pred -----------------------------------------------CCCcccCCchHHHHHHHHHHHHHHHHHHHcCcH
Confidence 1268999999999999999999864 3466
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Q 006102 595 ATWARVSVWLIIGVLVYVFYGRTHSSL 621 (661)
Q Consensus 595 ~t~~~~~vw~~ig~~iY~~yg~~hs~~ 621 (661)
.+|+..++|+++|+++|+.|+.||+|+
T Consensus 415 ~~~~~~~~~~~~g~~~y~~~~~~~~~~ 441 (445)
T PRK11357 415 PGLICAVIVIATGLPAYAFWAKRSRQL 441 (445)
T ss_pred HHHHHHHHHHHHhhhHHhheechhhhh
Confidence 778888899999999999888777654
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.7e-54 Score=482.18 Aligned_cols=368 Identities=20% Similarity=0.391 Sum_probs=309.5
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
+++||+|+.++++++++|+++|+|+|..++..+ ..+|| +++++|+++++++++.++||+|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 359999999999999999999999999999866 45787 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+||.+||++||.+|++|....++...+.+.+++.+.. ..|.+ ....+++++++++|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~--------------~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP---QVPVW--------------PWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cCcHH--------------HHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988877665555544433221 11111 134555677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc------ccC----CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGF------KTG----WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAE 273 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~------~~~----~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~ 273 (661)
++++.+.+.+|++.++++++.++.... ..+ ++++ +.+++.|.+..+++.++..++|+|.|+|.+++++|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL-TAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc-CCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999988877777654210 111 1111 12345567777889999999999999999999999
Q ss_pred hhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhc
Q 006102 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSIL 352 (661)
Q Consensus 274 E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~ 352 (661)
|+|||+||+|||++.++.++.++|++..+++.+++|+++.+ .++|+.+++++.+++++..++.++++++.+++.++.++
T Consensus 231 E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~ 310 (471)
T PRK11387 231 ETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLY 310 (471)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764 46799999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006102 353 PQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D----VSALAGMVSVGTLLAFTMVAISVLIL 426 (661)
Q Consensus 353 ~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~--~----~~~L~~l~s~~~l~~y~~v~~~~i~l 426 (661)
+.+|++|+|||||.+|++|+|+||+ ++|++|++++.+++.+..+.. . +..+.++.+...++.|.+++++.+++
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMF 389 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 999999998876554432221 1 34577888889999999999999999
Q ss_pred hccCCC
Q 006102 427 RYVPPD 432 (661)
Q Consensus 427 R~~~~~ 432 (661)
|+++|+
T Consensus 390 r~~~~~ 395 (471)
T PRK11387 390 RRRHLR 395 (471)
T ss_pred HHHHHh
Confidence 987764
No 5
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=3.8e-54 Score=481.17 Aligned_cols=371 Identities=24% Similarity=0.402 Sum_probs=314.8
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
+++||+|+.++++++++|+++|+|+|..++..+ ..+||+.+++|+++++++++.++|++|+++++|.+||.|.|+++.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 359999999999999999999999999999865 6789998999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
||.+||++||.+++.|....+....+.+.+...+ ......|.+ .++.+++++++++|++|+|.++
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~--------------~~~~~~~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGGVPQW--------------VFALAALTIVGTMNMIGVKWFA 167 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCcHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876555554445454322 111111211 2467778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc--------CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhc
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLGFKT--------GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~~~~--------~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~k 276 (661)
+++.+++.+|++.++++++.++...... ++....+++++.|.|+.+++.++..++|+|.|+|.+++++||+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 9999999999988888777765431111 11112233567788888888888899999999999999999999
Q ss_pred CcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 277 nP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
||+|++|||+..++..+.++|++..++...++|+++.. ..+|+.+++++.|.+++..++.+.++++.+++.++.+++.+
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998874 45799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh---c---CHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006102 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---M---DVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 356 R~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~---~---~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~ 429 (661)
|++|+|||||.+|++|+|+||+ ++|.+|++++++++.+..++ . .++.+.++.+++.++.|.+++++.+++|++
T Consensus 328 R~l~a~Ardg~lP~~f~kv~k~-~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMSRQ-HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999965 99999999988876543222 2 267799999999999999999999999876
Q ss_pred CCC
Q 006102 430 PPD 432 (661)
Q Consensus 430 ~~~ 432 (661)
.++
T Consensus 407 ~~~ 409 (499)
T PRK15049 407 IKE 409 (499)
T ss_pred hhh
Confidence 543
No 6
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=6.4e-53 Score=466.67 Aligned_cols=422 Identities=21% Similarity=0.297 Sum_probs=354.9
Q ss_pred ccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (661)
Q Consensus 46 ~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G 125 (661)
+++|+++.+|++++++|.++|+|+|..++.++. .|+..+++|+++++.+++.+++|+|+++++|++||.|.|+++.+|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 478999999999999999999999999998654 366678999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
|.+||++||.+|+.+.....+.+.....|...++.... .++...+.+++++++++.+|.+|+|..++
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------------DPLVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------------CcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999887766666555666655443110 01112235667777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a 285 (661)
+|++.+.+|++.++++++.++...+.+++.+..+..+ ..++.++..++..++|+|.|+|.+++++||+|||+|++|||
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 9999999999988888777765433333322111111 12456778888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhc
Q 006102 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (661)
Q Consensus 286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d 364 (661)
++.++.+++++|++..++..+.+|++++. .++|+.+++++..+++...++.++++++.+++.++.+...+|++++||||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988764 56799999988888888889999999999999999999999999999999
Q ss_pred CCCccccccccccccCcchHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006102 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVP 437 (661)
Q Consensus 365 g~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~ 437 (661)
|.+||+|+|+||+ ++|++|++++++++.++.+.. .++.+.++.+++.++.|.+++++.+++|+|+++
T Consensus 308 g~lP~~~~~v~~~-~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~----- 381 (445)
T PRK10644 308 GLFPPIFARVNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG----- 381 (445)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----
Confidence 9999999999986 999999999999988765432 367789999999999999999999999876543
Q ss_pred CCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHH
Q 006102 438 STLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVF 517 (661)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (661)
T Consensus 382 -------------------------------------------------------------------------------- 381 (445)
T PRK10644 382 -------------------------------------------------------------------------------- 381 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHH
Q 006102 518 VLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATW 597 (661)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~~l~~~t~ 597 (661)
++.|+.|++|+++++.|++++...+..++
T Consensus 382 ---------------------------------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
T PRK10644 382 ---------------------------------------------------KARPAYLAVTLIAFVYCIWAVVGSGAKEV 410 (445)
T ss_pred ---------------------------------------------------ccccchhHHHHHHHHHHHHHHHHhhHHHH
Confidence 12256789999999999999999999998
Q ss_pred HHHHHHHHHHHHHH-Hhhccccccc
Q 006102 598 ARVSVWLIIGVLVY-VFYGRTHSSL 621 (661)
Q Consensus 598 ~~~~vw~~ig~~iY-~~yg~~hs~~ 621 (661)
....+++++|.++| +.+++|||+.
T Consensus 411 ~~~~~~~~~~~~~y~~~~~~~~~~~ 435 (445)
T PRK10644 411 MWSFVTLMVITAFYALNYNRLHKNP 435 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99889999999999 5577667643
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.1e-52 Score=463.22 Aligned_cols=427 Identities=38% Similarity=0.672 Sum_probs=375.8
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
++|+++.+|++++.++.++|+|+|..++... ..+||..+++|+++++.+++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 5799999999999999999999999999865 458999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA-DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
..||++||.+++.+....+..+...++++..++... ...|.+.... .+......+.+++++++++.+|++|+|.+++
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAK--PGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcC--CcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999988776521 1122221100 0011122235677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a 285 (661)
++.+.+.++++.++++++.++.+.+.+++++ +.|.++.++..++...+|+|.|+|.+++++||+|||+|++||+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYTP------FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC------CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 9999999999998887777776555555542 3455677889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhc
Q 006102 286 IGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (661)
Q Consensus 286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d 364 (661)
++.++.++.++|++.+++..+..|.+++ +.++|+..++++.++++...++.++++++.+++.++.+...+|++++||||
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999888876 445788888888999999999999999999999999999999999999999
Q ss_pred CCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccccc
Q 006102 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSI 444 (661)
Q Consensus 365 g~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~~~~~~~~ 444 (661)
|.+|++|+|+|+|+++|++|++++++++.++....+++.+.++.+.+.++.|.+++++.+++|+|+|+.
T Consensus 312 g~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~----------- 380 (429)
T TIGR00909 312 GLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI----------- 380 (429)
T ss_pred CCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------
Confidence 999999999998889999999999999998887788999999999999999999999999999877651
Q ss_pred cchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHHHHHHhhh
Q 006102 445 DSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAAS 524 (661)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (661)
T Consensus 381 -------------------------------------------------------------------------------- 380 (429)
T TIGR00909 381 -------------------------------------------------------------------------------- 380 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006102 525 DLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATWARVSVWL 604 (661)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~~l~~~t~~~~~vw~ 604 (661)
+++||.|..|+++.+.+..+++++...++.++....+|+
T Consensus 381 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (429)
T TIGR00909 381 -----------------------------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWM 419 (429)
T ss_pred -----------------------------------------CCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 006102 605 IIGVLVYVFY 614 (661)
Q Consensus 605 ~ig~~iY~~y 614 (661)
++|.++|..|
T Consensus 420 ~~g~~~y~~~ 429 (429)
T TIGR00909 420 LLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHcC
Confidence 9999999766
No 8
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=4.1e-53 Score=473.09 Aligned_cols=370 Identities=22% Similarity=0.351 Sum_probs=305.0
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~ 122 (661)
+++++|+|+.+|++++++|+++|+|+|..++..+ ..+||. ++++|+++++++++.++||+|+++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 3569999999999999999999999999999866 468996 89999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 123 ~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
.+||.+||++||.+++.+....+........++..++. ..| .+ ..+.+++.+++.+|++|+|.
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~---~~~------------~~--~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP---DTP------------GW--IWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCc------------hH--HHHHHHHHHHHHHHHHcchh
Confidence 99999999999999998876655433333323322211 011 11 23556666788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc----c---cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhh
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGF----K---TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~----~---~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~ 275 (661)
.+++|.+++.+|+..++.+++.++.... . ..++++.+.++..+.|+.+++.++..++|+|.|||.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 9999999999999887777766554311 0 11112211111224567788887777889999999999999999
Q ss_pred cCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 006102 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCST 346 (661)
Q Consensus 276 knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~---------~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s 346 (661)
|||+||+|||++.++.+++++|++..+++...+|+++.+ ..+|+..++++.+.++...++.+.++++.+++
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986531 13688889999998888999999999999999
Q ss_pred HHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHH
Q 006102 347 LMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVA 420 (661)
Q Consensus 347 ~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~------~~~L~~l~s~~~l~~y~~v~ 420 (661)
.++.+++.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..+... ++.+.++.+.+.++.|.+++
T Consensus 312 ~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 390 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIA 390 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 9999999999998877655421 34578888889999999999
Q ss_pred HHHHHhhccCCC
Q 006102 421 ISVLILRYVPPD 432 (661)
Q Consensus 421 ~~~i~lR~~~~~ 432 (661)
++.+++|++.++
T Consensus 391 ~a~l~~R~~~~~ 402 (489)
T PRK10836 391 ISHYRFRRGYVL 402 (489)
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.2e-52 Score=465.20 Aligned_cols=369 Identities=23% Similarity=0.343 Sum_probs=316.8
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
+++||+|+.+|+.++++|+++|+|+|..++... ..+||+++++|++++++.++.++|++|+++++|++||.|.|+++.+
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~ 84 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYM 84 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 459999999999999999999999999999855 5699999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
||.+||++||++|+.|....++...+.+.+++.++.. .|.+ .+..+++++++.+|++|+|..+
T Consensus 85 g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~~~--------------~~~~~~~~~~~~lN~~gv~~~~ 147 (461)
T PRK10746 85 SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MAQW--------------IPALIAVALVALANLAAVRLYG 147 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CchH--------------HHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999988888877777777655421 1111 2355667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc---ccc-----cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhc
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYL---GFK-----TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~---~~~-----~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~k 276 (661)
+++.+++.+|+..++++++.++.. ... .+++++.+++++.|.|+.|+..++..++|+|.|+|.++..+||+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 999999999988887777666532 111 112222233456678899999999999999999999999999999
Q ss_pred CcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 277 nP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
||+|++|||+..++..+.++|++..+++.+.+|+++.+ .++|+..++++.|.+....++++.++++.+++.++.+++.|
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875 45699999999999988899999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHH---HHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006102 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFFM-----DVSALAGMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 356 R~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~---~~~~-----~~~~L~~l~s~~~l~~y~~v~~~~i~lR 427 (661)
|++++|||||.+|++|+|+||+ ++|++|++++.+...+. .... .++.+.++.+.+.++.|.+++++.+++|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 99999999886543321 1111 1456888999999999999999999999
Q ss_pred ccCCC
Q 006102 428 YVPPD 432 (661)
Q Consensus 428 ~~~~~ 432 (661)
+++|+
T Consensus 387 ~~~~~ 391 (461)
T PRK10746 387 RAHKA 391 (461)
T ss_pred Hhccc
Confidence 88765
No 10
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=6.8e-53 Score=467.33 Aligned_cols=370 Identities=22% Similarity=0.400 Sum_probs=318.5
Q ss_pred cccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Q 006102 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (661)
Q Consensus 43 ~~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~ 122 (661)
++++++|+|+.+++.++++|+++|+|+|..++..+ ..+||+++++|+++++.+++.++||+|+++++|.+||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 33469999999999999999999999999999865 56899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 123 ~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
.+||.+||++||.+|+.+....++...+.+.++..++.. .|.+ .++.+++++++++|++|+|.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--------------~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD---VPTW--------------IWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---CcHH--------------HHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999887777777666676654321 1111 24667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc------cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK------TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~------~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~k 276 (661)
.++++.+++.+|++.++++++.++..... .++++..+.+++.|.|+.+++.++..++|+|.|+|.+++++||+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 99999999999998877777666543111 111111122345678899999999999999999999999999999
Q ss_pred CcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 277 nP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
||+|++|||++.++..++++|++..++....+|+++.. .++|+.+++++.++++...++.+.++++.+++.++.+++.+
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 316 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNS 316 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988864 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006102 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 356 R~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~ 429 (661)
|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..++. .++.+.++.+...++.|.+.+++.+++|++
T Consensus 317 R~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 395 (458)
T PRK10249 317 RMLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAA 395 (458)
T ss_pred HHHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 999999999999887665442 256788888889999999999999999875
Q ss_pred CC
Q 006102 430 PP 431 (661)
Q Consensus 430 ~~ 431 (661)
.+
T Consensus 396 ~~ 397 (458)
T PRK10249 396 MR 397 (458)
T ss_pred HH
Confidence 43
No 11
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.4e-52 Score=463.42 Aligned_cols=368 Identities=18% Similarity=0.310 Sum_probs=312.6
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
.+|+++.++++++++|+++|+|+|.+++.++ . +||..+++|+++++.+++.++||+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5789999999999999999999999998754 3 6888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
..||++||.+++.+.....+.+.+...|+..+++... . .....+++++++++++.+|++|+|.++++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~-~------------~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL-S------------PVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c------------hHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777776666777766553110 0 01112345667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHh
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~ai 286 (661)
|++.+..+++.++++++.++...+.+++.+..++.+. + .+.++..++..++|+|.|+|.+++++||+|||+||+|||+
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 226 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHL-P-FFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCC-c-hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHH
Confidence 9999999998888888777665444444321111111 1 1467888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcC
Q 006102 287 GTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (661)
Q Consensus 287 i~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg 365 (661)
+.++.+++++|++...+..+..|++++. .++|+.+++++..+++...++.++++++.+++.++...+.+|++++|+|||
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg 306 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEG 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988888988764 467888888888888888999999999999999999999999999999999
Q ss_pred CCccccccccccccCcchHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006102 366 LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (661)
Q Consensus 366 ~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~ 432 (661)
++|++|+|+||+ ++|++|++++++++.++.+.. .++.+.++.++..++.|.+.+++.+++|+|+|+
T Consensus 307 ~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~ 379 (438)
T PRK10655 307 YFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANV 379 (438)
T ss_pred chhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999976 999999999998877655432 367899999999999999999999999988754
No 12
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.7e-52 Score=461.97 Aligned_cols=370 Identities=22% Similarity=0.398 Sum_probs=312.8
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
++++||+|+.+|++++++|+++|+|+|..++..+ +.+||+++++|+++++..++.++|++|+++++|.+||.|.|+++.
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3469999999999999999999999999999855 579999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+||.+||++||.+++++....++.+.+.+.++..++.+ .|.+ .+.++++++++.+|.+|+|..
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT---VPHW--------------IWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CChH--------------HHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999887777777777776554321 1111 235566677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc---c--c---ccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYL---G--F---KTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~---~--~---~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~ 275 (661)
++++.+++.+|+..++++++.++.. . . ..+..+..+++++.|.|+.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999999887776655321 1 0 111111112234567788899999999999999999999999999
Q ss_pred cCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchh
Q 006102 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (661)
Q Consensus 276 knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~ 354 (661)
|||+|++|||++.++.++.++|++..+++....|++++. .++|+..+++..|.++...++.+.++.+.+++.++.+++.
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999989988875 3468888888889888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh---cC---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006102 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---MD---VSALAGMVSVGTLLAFTMVAISVLILRY 428 (661)
Q Consensus 355 sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~---~~---~~~L~~l~s~~~l~~y~~v~~~~i~lR~ 428 (661)
+|++++|||||.+|++|+|+||+ ++|++|+++++++..+...+ .+ +..+.++.+.+.++.|.+++++.+++|+
T Consensus 306 sR~~~~~ardg~lP~~~~kv~~~-~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTSRR-GIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 99999999997755442222 12 4578899999999999999999999998
Q ss_pred cCCC
Q 006102 429 VPPD 432 (661)
Q Consensus 429 ~~~~ 432 (661)
++++
T Consensus 385 ~~~~ 388 (457)
T PRK10580 385 RLPP 388 (457)
T ss_pred HHHh
Confidence 7654
No 13
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=4.2e-52 Score=460.00 Aligned_cols=425 Identities=23% Similarity=0.343 Sum_probs=356.9
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
+++||+++.+++++++++.++| |.+...+... ..+||. .+++++++++..++.++||+|+++++|++||.|.|+++.
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~-~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~ 80 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGL-AQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRA 80 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhh-ccchhHhhHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4699999999999999999998 7776655433 457885 788999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+||..||++||.+++.+....++.+...++|+..++... +.+ ..+.+++++++++|++|+|.+
T Consensus 81 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~~~--------------~~~~~~~~~~~~ln~~g~~~~ 143 (442)
T TIGR00908 81 FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---PGW--------------LAALVFYIVFIGINILGVGEA 143 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---chh--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765321 111 246677778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC--CCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccC
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~--~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~ 281 (661)
++++.+++.++++.++++++.+..+.+..++.+ ..+.+++.|.++.+++.++..++|+|.|+|.+++++||+|||+||
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ 223 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRD 223 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999998876665554433322222211 112234667778889999999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHc-C-chHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASH-G-MHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 282 iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~-g-~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
+|||++.++.++.++|+...++..+..|.+++ +.++|+.+++++. | ..+...++.+..+++.+++.++.+++.+|++
T Consensus 224 iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l 303 (442)
T TIGR00908 224 IPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQI 303 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877777777666 4467898888876 3 2567778888888899999999999999999
Q ss_pred HHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 006102 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPS 438 (661)
Q Consensus 359 ~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~~ 438 (661)
++|||||.+|++|+|+| |+++|++|++++++++.++.+..+.+.+.++.+++.++.|.+.+++.+++|+++|+.
T Consensus 304 ~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~----- 377 (442)
T TIGR00908 304 FALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDM----- 377 (442)
T ss_pred HHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----
Confidence 99999999999999999 569999999999999988887778888899999999999999999999999877651
Q ss_pred CccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHHH
Q 006102 439 TLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFV 518 (661)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
T Consensus 378 -------------------------------------------------------------------------------- 377 (442)
T TIGR00908 378 -------------------------------------------------------------------------------- 377 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHhc---CCHH
Q 006102 519 LTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLIN---LGSA 595 (661)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~~---l~~~ 595 (661)
+++||+|+.|+.|.++++.+++++.. .++.
T Consensus 378 -----------------------------------------------~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~ 410 (442)
T TIGR00908 378 -----------------------------------------------ERPYRTPGGILTPGVALVLACVALVTGFYVDPR 410 (442)
T ss_pred -----------------------------------------------CCCccCCCcchHHHHHHHHHHHHHHHHHHcChH
Confidence 23799999999999999999888665 3666
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc
Q 006102 596 TWARVSVWLIIGVLVYVFYGRTHSSL 621 (661)
Q Consensus 596 t~~~~~vw~~ig~~iY~~yg~~hs~~ 621 (661)
.|....++.+++.+.|+.|.++|.+.
T Consensus 411 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 411 VVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 77777888888999999998777644
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=3.7e-52 Score=458.91 Aligned_cols=362 Identities=19% Similarity=0.270 Sum_probs=305.8
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
.+|+++.++++++++|+++|+|+|.+++..+ .+||.++++|+++++.+++.++||+|+++++|++||.|.|+++ +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 5688999999999999999999999999865 3699999999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
.+||++||.+|....+...+.+.....|+..++.... .+ ....+++.+++++++++|.+|+|..+++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-~~------------~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-DP------------IPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-Ch------------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999987777777777777777765543110 00 0111345677778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHh
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~ai 286 (661)
+.+.+.+++++++.+++.++.+.+.+++.+.. .+..+.++.+++.++..++|+|.|+|.+++.+||+|||+||+|||+
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi 224 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANW--NTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhcccc--cCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHH
Confidence 99999998887776666665543333221111 1122356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcC
Q 006102 287 GTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (661)
Q Consensus 287 i~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg 365 (661)
+.++.+++++|++.+++..+.+|+++. ..++|+.+++++.++++...+++++++++++++.+++++..+|..++|||||
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG 304 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDG 304 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999987 4668999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccCcchHHHHHHHHHHHHHHh----c--------CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006102 366 LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF----M--------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 366 ~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~----~--------~~~~L~~l~s~~~l~~y~~v~~~~i~lR 427 (661)
.+||+|+|+||+ ++|.+|++++++++.++... . .++.+.++.+...++.|.+++++.+++|
T Consensus 305 ~lP~~f~k~nk~-g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 305 NFPKVYGEVDKN-GIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred CccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999965 99999999988876554321 1 2567889999999999999999988553
No 15
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-53 Score=449.90 Aligned_cols=369 Identities=24% Similarity=0.359 Sum_probs=327.6
Q ss_pred ccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 46 ~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
++||+|+.+++.|+++|+.+|+|.|+.+|... ..+||+ .+++|++.|+...+++.|.+||++.+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l-~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKAL-SQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 59999999999999999999999999999854 679997 8999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
+|.+||..||+||+.|.+..++...+.+..++.++... .|. ..+..++.+++.++|.+|+|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~--v~~--------------~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT--VPP--------------WIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC--CCh--------------HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999998888888776321 122 23577888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccC------CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCc
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTG------WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~~~~~------~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP 278 (661)
..+.+++.+|++.++.+++.++....... ...+....+..+.|+.|+++.+..+.|+|.|.|.+...|+|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 99999999999999999888876432111 111122234556789999999999999999999999999999999
Q ss_pred ccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Q 006102 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (661)
Q Consensus 279 ~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~---------~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~ 349 (661)
+|++|||+.-.+..+.++|++..+++...+||++-+ ..+|+..++++.|.+.++.+++..++++.+++.|+
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998732 34699999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 350 SILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISV 423 (661)
Q Consensus 350 ~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~v~~~~ 423 (661)
.++++||++|+||+||..||+|+|+||+ |+|.+|++++.+++.+..+.. .++.|.+++++..+++|+.++++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999998887643332 267899999999999999999999
Q ss_pred HHhhccCCC
Q 006102 424 LILRYVPPD 432 (661)
Q Consensus 424 i~lR~~~~~ 432 (661)
+++|+..+.
T Consensus 423 irFR~A~~~ 431 (541)
T COG0833 423 IRFRRAMKA 431 (541)
T ss_pred HHHHHHHHH
Confidence 999987644
No 16
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=3e-51 Score=453.98 Aligned_cols=368 Identities=22% Similarity=0.413 Sum_probs=319.4
Q ss_pred ccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (661)
Q Consensus 46 ~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G 125 (661)
++||+|+.+++.++++|+++|+|+|..++..+ +.+||+++++|+++++.+++.++|++|+++++|.+||.|.|+++.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 59999999999999999999999999999866 56899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
|..||++||.+++.|....++...+.+.+++.+..+ .|.+ ..+.+++++++.+|++|+|..++
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~--------------~~~~i~~~~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---IPTW--------------VSAAVFFVVINAINLTNVKVFGE 150 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcHH--------------HHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999988888888887655421 1211 23566667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc------cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFK------TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~------~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~ 279 (661)
++.+.+.+|++.++++++.++..... ..+.+..+.+++.|.|+.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~ 230 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence 99999999998887766655432111 112222223456678888999999899999999999999999999999
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
|++|||+..++..+.+.|++...+.....|++++. .++|+.+++++.|.++...++.+.++++.+++.++.+++.+|++
T Consensus 231 r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l 310 (456)
T PRK10238 231 QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRML 310 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888889998874 45799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006102 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (661)
Q Consensus 359 ~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~ 432 (661)
|+|||||.+|++|+|+||+ ++|++|++++++++.+..+.. .++.+.++.+.+.++.|.+.+++.+++|+++++
T Consensus 311 ~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 311 FGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred HHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999977 999999999999887665542 256788899999999999999999999987654
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=5.2e-51 Score=453.86 Aligned_cols=370 Identities=23% Similarity=0.390 Sum_probs=318.2
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
+++++|+++.++++++++|+++|+|+|..+|..+ +.+||+.+++|++++++.++.+++++|+++..|..||.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3459999999999999999999999999999866 568999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+|+..||++||.+++.+....++.+.+.+.|+..++.. .+.+ ..+.+++++++++|++|+|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~---~~~~--------------~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD---LSDW--------------VASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHH--------------HHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999877777777777777655421 1111 235567778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc-----c----cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGF-----K----TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~-----~----~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E 274 (661)
+++|++.+.+|++.++++++.++.... . .++++..+.+++.|.|+.+++.++...+|+|.|+|.+++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 999999999999999888888775321 1 1233333344566888899999999999999999999999999
Q ss_pred hcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhch
Q 006102 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (661)
Q Consensus 275 ~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (661)
+|||+|++||++..+.+.+.++|++...++....|++++. .++|+.++++..+.++...++.+.++++.+++.++.+++
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999889999999999999999999998874 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHH---HHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFFM-----DVSALAGMVSVGTLLAFTMVAISVLI 425 (661)
Q Consensus 354 ~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~---~~~~-----~~~~L~~l~s~~~l~~y~~v~~~~i~ 425 (661)
.+|++|+|||||.+|++|+|+||| ++|++|+++++++..+. .... .++.+.++.+++..+.|.+.+++.++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 99999999988765431 1221 25567788888888999999999999
Q ss_pred hhccCCC
Q 006102 426 LRYVPPD 432 (661)
Q Consensus 426 lR~~~~~ 432 (661)
+|+++|+
T Consensus 396 lr~~~p~ 402 (469)
T PRK11049 396 YRKQRPH 402 (469)
T ss_pred HHHhhhh
Confidence 9998776
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=3e-51 Score=454.35 Aligned_cols=369 Identities=22% Similarity=0.356 Sum_probs=317.7
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
.++||+|+.+|++++++|+++|+|+|..++... ..+||..+++|+++++++++.++|++|+++++|.+||.|.|+++.+
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 459999999999999999999999999999865 4689998899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
||.+||++||.+++.+....++.+...+.++..++.. .|.+ .++++++++++.+|.+|+|..+
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~--------------~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD---IPLW--------------LFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcHH--------------HHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999999888888888777765421 1211 3467777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc-------cccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcC
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLG-------FKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~-------~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~kn 277 (661)
+++.+.+.+|++.++.+++.++... +..+++++.+.+++.|.|+.+++.++..++|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 9999999999998877777665321 111223333334566788889999999999999999999999999999
Q ss_pred cccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 278 P~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~--~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
|+|++|||+..++..++++|++..+...+++|+++.+ ..+|+..+.+..|.++...++.+.++++++++.++.+++.+
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888877643 23488888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006102 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D----VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 356 R~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~--~----~~~L~~l~s~~~l~~y~~v~~~~i~lR~~ 429 (661)
|++++|||||.+||+|+|+||+ ++|++|++++++++.+..+.. + ++.+.++.+...++.|.+++++.+++|++
T Consensus 310 R~~~a~ardg~lP~~~~~v~~~-~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~ 388 (452)
T TIGR01773 310 RMLYSLAERGDAPRVFMKLNKK-GVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKK 388 (452)
T ss_pred HHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999965 999999999998887655442 1 34577888888899999999999999987
Q ss_pred CCC
Q 006102 430 PPD 432 (661)
Q Consensus 430 ~~~ 432 (661)
.|+
T Consensus 389 ~~~ 391 (452)
T TIGR01773 389 LKA 391 (452)
T ss_pred HHh
Confidence 654
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=9.9e-50 Score=444.23 Aligned_cols=370 Identities=22% Similarity=0.379 Sum_probs=312.8
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHh
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~~ 124 (661)
.+|+++.++++++++|+++|+|+|..++..+ ..+||. .+++|+++++.+++.+++|+|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 5789999999999999999999999999866 468885 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
||..||++||.+++.+.....+.+....+++..++..... ..+....+.+++++++++.+|++|+|.++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-----------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999998887777776666776665531100 00111223566777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCC-CCCC-CCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCc
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG-YELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~-~~~~-~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~i 282 (661)
++|.+.+.+|+++++++++.++...+.+++.. +.+. .+..+.++.++..++...+|+|.|||.+++++||+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 99999999999998888887765433333321 1111 1111235677888999999999999999999999999 9999
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCH-HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~-~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
||+++.++.+++++|++...+..+..|++++ +.++| ..++.++..+++...++.++++++.+++.++.+.+.+|++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876 45677 777788888889999999999999999999999999999999
Q ss_pred HHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 006102 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (661)
Q Consensus 361 ma~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~-----~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~ 430 (661)
|||||.+|++|+|+||| ++|++|++++++++.++.+. .+++.+.++.+++.++.|.+++++.+++|+|+
T Consensus 312 mardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988 99999999999887654433 25778999999999999999999999998875
No 20
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=5.3e-50 Score=449.76 Aligned_cols=390 Identities=24% Similarity=0.374 Sum_probs=311.1
Q ss_pred ccccCCcccCCCcccccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHH
Q 006102 29 RRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAEL 106 (661)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~-~il~~ll~~l~~l~~al~~aEl 106 (661)
++|+......+.. ++++++|+++.++++++++|+++|+|+|..++.++. .+|| + .+++|+++++.+++.+++|+|+
T Consensus 23 ~~~~~~~~~~~~~-~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~-~~G~~g~~~~~~ii~~i~~~~~al~~aEL 100 (501)
T TIGR00911 23 RKKSVSASTVDGG-EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLK-NAGSVGLALIMWAVCGIFSIVGALVYAEL 100 (501)
T ss_pred ccccccccccccc-cccccCccccHhHhhHhheeceEEeeEeecHHHHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333333 445699999999999999999999999999998664 4666 3 4678999999999999999999
Q ss_pred hccCCCCccHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHccCCChhhHhhhccCCCCccchhHH
Q 006102 107 ASRCPSAGSAYHYSYICVGEGVAWLIGWALIL-EYTIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPC 184 (661)
Q Consensus 107 as~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l-~~~~~~aa~a~~~~~~l~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~ 184 (661)
++++|++||.|.|+++.+|+.+||+.||..++ .+....+..+...+.|+.. ++.+. ..|. +...++
T Consensus 101 as~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-~~~~-----------~~~~~i 168 (501)
T TIGR00911 101 GTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-EVPE-----------WAIRLV 168 (501)
T ss_pred HhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCch-----------HHHHHH
Confidence 99999999999999999999999999998765 3334445555555555432 22110 0111 112346
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCC--CchhHHHHHHHHHHHHHh
Q 006102 185 AAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF--PFGVNGMLAGSATVFFAF 262 (661)
Q Consensus 185 a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~--p~g~~gi~~~~~~~~faf 262 (661)
+++++++++++|.+|+|.+++++.+.+.+++++++++++.++.....++.........+. +.+..++..++..++|+|
T Consensus 169 ~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af 248 (501)
T TIGR00911 169 AVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAY 248 (501)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999999888888776643322221111111111 134677888999999999
Q ss_pred hhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHH
Q 006102 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTA 342 (661)
Q Consensus 263 ~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~ 342 (661)
.|+|.+++++||+|||+|++|||++.++.+++++|++.+++....+|.+++..+++....+.....++...++.+.+.++
T Consensus 249 ~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is 328 (501)
T TIGR00911 249 GGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLS 328 (501)
T ss_pred HhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887755444443333322225677888888999
Q ss_pred HHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 006102 343 LCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAIS 422 (661)
Q Consensus 343 ~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~ 422 (661)
.+++.++.+.+.+|++++|||||.+|++|+|+|+|+++|++|++++++++.+.....++..+.++.++..++.|.++.++
T Consensus 329 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a 408 (501)
T TIGR00911 329 CFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAG 408 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999899999999999998877777788888889999999999999999
Q ss_pred HHHhhccCCC
Q 006102 423 VLILRYVPPD 432 (661)
Q Consensus 423 ~i~lR~~~~~ 432 (661)
++++|+|+|+
T Consensus 409 ~i~lR~~~p~ 418 (501)
T TIGR00911 409 LLWLRYKRPE 418 (501)
T ss_pred HHheeccCCC
Confidence 9999998776
No 21
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=7.2e-50 Score=441.74 Aligned_cols=354 Identities=20% Similarity=0.304 Sum_probs=303.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHH
Q 006102 59 IGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (661)
Q Consensus 59 l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l 138 (661)
+++|+++|+|+|..++..+ +.+||+++++|+++++.+++.++|++|+++++|++||.|.|+++.+||.+||++||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 6789999999999999855 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006102 139 EYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAM 218 (661)
Q Consensus 139 ~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~l 218 (661)
.++...+..+...+.++..+.. ..| ...++.+++++++.+|++|+|..+++|.+.+.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP---GIP--------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---cCc--------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9998888777665555543321 111 12357788888999999999999999999999999988
Q ss_pred HHHHHhhhhcccc-------cCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHH
Q 006102 219 LFVIIAGSYLGFK-------TGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALS 291 (661)
Q Consensus 219 l~iii~g~~~~~~-------~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~ 291 (661)
+.+++.++..... .++++..+.+++.|.|+.+++.++..++|+|.|+|.++..+||+|||+||+|||+..++.
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 8887776653211 111112223456688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCC--CCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCcc
Q 006102 292 ICCALYMLVSIVIVGLVPYYEMDP--DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (661)
Q Consensus 292 i~~v~Yil~~~~l~~~vp~~~~~~--~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (661)
.+.++|++..++....+|+++.+. ..++..+++..++++...++++.++++.+++.++.+++.+|++|+|||||.+||
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999999999987543 356777888999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006102 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 370 ~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~ 431 (661)
+|+|+|++ ++|.+|++++++++.+..+.. .++.+.++.+...++.|.+.+++.+++|++.+
T Consensus 304 ~~~~~~~~-~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~ 370 (446)
T PRK10197 304 VMGKINRS-KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILR 370 (446)
T ss_pred HHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 999999999987776544332 36789999999999999999999999998643
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=4e-49 Score=440.59 Aligned_cols=366 Identities=22% Similarity=0.315 Sum_probs=305.5
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHhc
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~~G 125 (661)
||+|+.+|+.++++|.++|+|+|..++..+ ..+||. .+++|+++++++++.++||+|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 588999999999999999999999999866 458885 7999999999999999999999999996 4567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
|.+||++||.++++|+...++.+...+.++..+.. ..+.. .+..+++++++++|++|+|.+++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD---KVNPA--------------VWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCHH--------------HHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999988888888877764321 11111 12345556788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccc--C-----CCCCCCCCCCCCc----hhHHHHHHHHHHHHHhhhhhHHhcchhh
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKT--G-----WSGYELPTGYFPF----GVNGMLAGSATVFFAFIGFDAVASTAEE 274 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~--~-----~~~~~~~~~~~p~----g~~gi~~~~~~~~faf~G~e~ia~~a~E 274 (661)
++++.+.+|++.++.+++.++.....+ + +..+.+++++.|. ++.++..++..++|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 999999999988877777665432111 1 1111122334433 2678899999999999999999999999
Q ss_pred hcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCC---C-------CCCHHHHHHHHcCchHHHHHHHHHHHHHHH
Q 006102 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM---D-------PDTPISSAFASHGMHWASYVITIGAVTALC 344 (661)
Q Consensus 275 ~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~---~-------~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~ 344 (661)
+|||+||+|||++.+..++.++|++..+++...+|+++. + ..+|+..+++..|.++...++.++++++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999999888888887652 1 126888788888888999999999999999
Q ss_pred HHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHH
Q 006102 345 STLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTM 418 (661)
Q Consensus 345 ~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~ 418 (661)
++.++.+++.+|++++|||||.+|++|+|+||+ ++|++|++++++++.+..+.. .++.+.++.+.+.++.|.+
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~-~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVDRR-GVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 999999999998876543332 2567889999999999999
Q ss_pred HHHHHHHhhccCCC
Q 006102 419 VAISVLILRYVPPD 432 (661)
Q Consensus 419 v~~~~i~lR~~~~~ 432 (661)
.+++.+++|++.++
T Consensus 382 ~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 382 ICLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987544
No 23
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=416.82 Aligned_cols=370 Identities=26% Similarity=0.440 Sum_probs=336.9
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
+++++|.|+.+++.++++|+.+|+|.|...+... ..+||+++++++++|++..+..-+.+|+...-|++|+...|+++.
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I-~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~ 86 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAI-AMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY 86 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhh-hhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 4469999999999999999999999999998754 679999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+||..||++||.||+.+++...+...+.+.|++.++.+ .|.|. .+++.+++...+|..++|..
T Consensus 87 lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~---vP~Wv--------------~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 87 LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD---VPQWV--------------FALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853 26654 47888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc--------ccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGF--------KTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~--------~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~ 275 (661)
+..+..+..+|++.++.++++|..... ....++..+.++|.|+|+.|++.++..++|+|.|.|.+...|+|+
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 999999999999999999988876432 223444555678999999999999999999999999999999999
Q ss_pred cCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchh
Q 006102 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (661)
Q Consensus 276 knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~-~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~ 354 (661)
|||+|++|||+-.....+.++|+...+++....|+++++. .+|+...|+..|.++.+.++++.++.+.++++|+.+++.
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglyst 309 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYST 309 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhccccccccc
Confidence 9999999999999999999999999999999999999754 569999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh---cC---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006102 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---MD---VSALAGMVSVGTLLAFTMVAISVLILRY 428 (661)
Q Consensus 355 sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~---~~---~~~L~~l~s~~~l~~y~~v~~~~i~lR~ 428 (661)
+|++|+||+||..||.++|+|++ ++|++|++++.++..+...+ .+ ++.+.+..+.+.+..|.++.++.+++|+
T Consensus 310 sRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 310 SRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred chHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 99999999988776553332 22 6678899999999999999999999998
Q ss_pred cCCC
Q 006102 429 VPPD 432 (661)
Q Consensus 429 ~~~~ 432 (661)
++|+
T Consensus 389 ~~~~ 392 (462)
T COG1113 389 AKPA 392 (462)
T ss_pred cchh
Confidence 5444
No 24
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.1e-48 Score=428.52 Aligned_cols=355 Identities=19% Similarity=0.236 Sum_probs=291.4
Q ss_pred cCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHH
Q 006102 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (661)
Q Consensus 51 L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gf 130 (661)
+|+++.+++.+|+|+|+|+|.+++..+ +.+||.++++|+++++.+++.++||+|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 578999999999999999999999865 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006102 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (661)
Q Consensus 131 i~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~ 210 (661)
++||.++..+....++.......++...++... +....++.+++++++++|.+|+|.+++++.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS---------------WQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC---------------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987776655554444555554443110 11113466777788999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHH
Q 006102 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (661)
Q Consensus 211 ~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~ 290 (661)
+.+.++.+..+...+ ..+..++. ..++.+.++.+++.++..++|+|.|+|.+++++||+|||+||+|||++.++
T Consensus 145 ~~~~~~i~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~ 218 (410)
T PRK11021 145 ALLIVALVVAIWWAG--DIKPADIP----FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGL 218 (410)
T ss_pred HHHHHHHHHHHHHHc--CCchhcCC----CCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHH
Confidence 866554433322211 11122221 112234578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCcc
Q 006102 291 SICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (661)
Q Consensus 291 ~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (661)
.+++++|++.+++.....|+++. ..++|..+++++..+++...++.+.++++.+++.++.+.+.+|++++|||||.+||
T Consensus 219 ~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 219 LLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 99999999999988877776554 34567777787776666777888889999999999999999999999999999999
Q ss_pred ccccccccccCcchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006102 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRY 428 (661)
Q Consensus 370 ~f~~~~~~~~~P~~a~l~~~ii~~l~~~~-----~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~ 428 (661)
+|+|+||+ ++|.++++++++++.+..++ .+++.+.++.+...++.|.+++++.+++|+
T Consensus 299 ~~~k~~~~-~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~ 361 (410)
T PRK11021 299 YLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLK 361 (410)
T ss_pred HHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999976 99999999998877665433 368889999999999999999999999875
No 25
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=4.6e-49 Score=462.48 Aligned_cols=467 Identities=15% Similarity=0.212 Sum_probs=373.4
Q ss_pred cccccCHHHHHHHH-HhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCccHHHHHHHH
Q 006102 47 LAKNLTIPHLVAIG-VGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASR-CPSAGSAYHYSYIC 123 (661)
Q Consensus 47 l~r~L~~~~l~~l~-ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~-~P~~Gg~y~y~~~~ 123 (661)
-+|++|+++.+++. +++++|+|+|..++.++. .+|.. .++.|++++++++++++||+|++++ +|++||.|.|++++
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 46789999999998 999999999999998774 56765 7888999999999999999999998 99999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+|+.+|+.+||.+++++.++.+.++.++++|+..++..... .... .. .....+++.+++++++++|++|+|.+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~--~~~~----~~-~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS--KIMV----DP-INDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cccc----Cc-cccchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999887742110 0000 00 01134578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc---CCC-----CCC-CCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKT---GWS-----GYE-LPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~~~---~~~-----~~~-~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E 274 (661)
+++|.++++++++.++.+++.++...... .+. .+. +..+..+.+..+++..+++.|++|.|+|+.++++||
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888877665422110 000 010 001111223344777778888999999999999999
Q ss_pred hcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CC------------------HHHHH----HHH-cCchH
Q 006102 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DT------------------PISSA----FAS-HGMHW 330 (661)
Q Consensus 275 ~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~-~~------------------~~~~a----~~~-~g~~~ 330 (661)
+|||+|++|||++.++.+++++|+++++++..+.+.+.... ++ |.... +.. .....
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988887777543211 11 11111 111 11123
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006102 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMV 408 (661)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~ 408 (661)
...++.++++++.+++.++++.+.+|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++.+++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56799999999999999999999999999999999999 8999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC-CCCCCCCCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccc
Q 006102 409 SVGTLLAFTMVAISVLILRYVPP-DEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYP 487 (661)
Q Consensus 409 s~~~l~~y~~v~~~~i~lR~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (661)
+.+++++|.+++++++++|++++ +.+|
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP---------------------------------------------------- 493 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRP---------------------------------------------------- 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCC----------------------------------------------------
Confidence 99999999999999999987653 3211
Q ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCC
Q 006102 488 LIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAG 567 (661)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 567 (661)
T Consensus 494 -------------------------------------------------------------------------------- 493 (953)
T TIGR00930 494 -------------------------------------------------------------------------------- 493 (953)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcccchhhcccCCCccccc
Q 006102 568 GFMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYRSSRDSFPATH 647 (661)
Q Consensus 568 ~f~~P~~P~~P~~si~~n~~lm~~l~~~t~~~~~vw~~ig~~iY~~yg~~hs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (661)
.||. ..|++|++++++|+++|+.. .|...++++++++++|++|.+||.+ +.|....|.--.+...+.-++..+
T Consensus 494 ~fk~-~~~~~sllG~l~c~~lmf~i---~w~~ali~~~i~~~ly~~~~~~~~~---~~wg~~~~~~~~~~a~~~ll~l~~ 566 (953)
T TIGR00930 494 RFKY-YHWWLSLLGASLCCAIMFLI---SWWAALVAMVIALFLYKYVTYKKPD---VNWGSSTQALSYSLALYSLLRLEE 566 (953)
T ss_pred cccc-chHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccCCC---CCcchHHHHHHHHHHHHHHHhccC
Confidence 3444 56799999999999999997 6888899999999999998887763 445544454444444556666677
Q ss_pred ccCcccccccccc
Q 006102 648 VDGTYCRSRDTLL 660 (661)
Q Consensus 648 ~~~~~~~~~~~~~ 660 (661)
++.|+|..|+++|
T Consensus 567 ~~~h~knwrPqiL 579 (953)
T TIGR00930 567 VEDHVKNWRPQCL 579 (953)
T ss_pred CCCCccccCCeEE
Confidence 7788888888876
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=423.67 Aligned_cols=374 Identities=26% Similarity=0.409 Sum_probs=323.0
Q ss_pred cccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Q 006102 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (661)
Q Consensus 45 ~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~ 122 (661)
..++|+++.++++.+.+++++|+|+|+.+..+. .++|+ + .++.|+.+|++++..++||+|+++.+|++||.|.|..+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~ 86 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE 86 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH
Confidence 348999999999999999999999999999865 45666 2 67779999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 006102 123 CVGEGVAWLIGWALILEYTIGG-SAVARGISPN-LAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (661)
Q Consensus 123 ~~G~~~gfi~gw~~~l~~~~~~-aa~a~~~~~~-l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~ 200 (661)
++|+.+||..+|.-++...... +..+..+++| +...+.. -..|. ....+++.+.+++++++|+.++
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~p~-----------~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDVPR-----------VASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCCch-----------HHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999997666555544 7788888888 5544431 11121 2234678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc
Q 006102 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 201 k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~-~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~ 279 (661)
|+..++|.+++..|++++.++++.|++.....+.+++.++. .....+...+..++...+|+|.|||...+.+||+|||+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ 234 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc
Confidence 99999999999999999999999999865544444332221 01112345578888899999999999999999999999
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~-g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
||+|||+.+++.+++++|+++.++...+++++++...+.++..|.+. ++.+. +++.+.+.++.++++++.+++.||++
T Consensus 235 ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 235 RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999986666666656554 55555 99999999999999999999999999
Q ss_pred HHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006102 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (661)
Q Consensus 359 ~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~ 432 (661)
+++||+|+||+.|++.|+++.+|..++++.+.++++..+..|+++|++..+++..+.+.+..++++++|+|+|+
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999987
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=6.2e-47 Score=421.21 Aligned_cols=368 Identities=20% Similarity=0.322 Sum_probs=304.1
Q ss_pred cccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCC-ccHHHHHHHHhch
Q 006102 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSA-GSAYHYSYICVGE 126 (661)
Q Consensus 49 r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~-Gg~y~y~~~~~G~ 126 (661)
|++++++++++++|+++|+|+|..++..+ ..+||. .+++|+++++.+++.++||+|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 67999999999999999999999999876 457886 78899999999999999999999999996 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
..||++||.+|+.+.....+.+.....++..++..... ......-..+.+++++++.+|.+|+|.++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-----------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999998877666665555555544321100 0001111245666677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCC--CCCC-CC-CCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCc
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPT-GY-FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~--~~~~-~~-~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~i 282 (661)
|.+.+.+|+++++++++.++...+.+++... .+.. ++ ....+.++..++...+|+|.|+|.++.++||+|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 9999999999988888877654333333211 1111 11 1223566778888999999999999999999999 7999
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCH-HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~-~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
||++..++.+++++|++.+++..+..|++++. .++| ...++++.++++...++.++++++.+++.++++...+|++|+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987763 3445 677888888899999999999999999999999999999999
Q ss_pred HHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 006102 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (661)
Q Consensus 361 ma~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~-----~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~ 430 (661)
|||||.+||+|+|+||+ ++|++|++++++++.++... ..++.+.++.+...++.|.+.+++.+++|+|+
T Consensus 308 ~ardg~lP~~f~k~~~~-~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 308 MAKDKLMPKYFGKENAN-GAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHhCCCccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999976 99999999998887654433 23677889999999999999999999998765
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=3e-45 Score=409.58 Aligned_cols=380 Identities=18% Similarity=0.239 Sum_probs=293.5
Q ss_pred ccccccccccCHHHHHHHHHhhhh-hhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHH
Q 006102 42 RSHQKLAKNLTIPHLVAIGVGSTI-GAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHY 119 (661)
Q Consensus 42 ~~~~~l~r~L~~~~l~~l~ig~~i-G~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y 119 (661)
+++++|||+++.++.++++++.+. ..|++...+. +...+|| +++++|++++++.++.+++++|+++++|++||.|.|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~ 83 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFSISNSWTGISTTYNY-GLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFW 83 (482)
T ss_pred CCcceeecccchhHHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 456779999999999999999652 3677777664 3456898 589999999999999999999999999999999999
Q ss_pred HHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHH
Q 006102 120 SYICVG----EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGL 195 (661)
Q Consensus 120 ~~~~~G----~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i 195 (661)
+++.+| +..||++||.+++.+....++.+...+.++..........+.+. ...+....+..+++++++++
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccCchhhhhHHHHHHHHHHH
Confidence 999987 46799999999999999888888888888776543111000010 01122223466777889999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----c--CCCCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhhHH
Q 006102 196 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK----T--GWSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFDAV 268 (661)
Q Consensus 196 ~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~----~--~~~~~~~~~-~~~p~g~~gi~~~~~~~~faf~G~e~i 268 (661)
|.+|+|..++++++..+++++.++++++..+..... . .++++.+.. ++.|.|+ +++.++..++|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999999988777555544432111 1 122222222 4455555 4667777889999999999
Q ss_pred hcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhccc-CCCC-CC--CCHHHHHHHHc-CchHHHHHHHHHHHHHH
Q 006102 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP-YYEM-DP--DTPISSAFASH-GMHWASYVITIGAVTAL 343 (661)
Q Consensus 269 a~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp-~~~~-~~--~~~~~~a~~~~-g~~~~~~iv~i~~~~~~ 343 (661)
++++||+|||+||+|||++.++.++.+++++..++.....+ .++. +. .+|+.+++.+. |.++...++.+.++++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998887765555444433332 2222 22 25888888764 66577888888899999
Q ss_pred HHHHHhhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHH
Q 006102 344 CSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAF 416 (661)
Q Consensus 344 ~~s~~~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-----~~~~L~~l~s~~~l~~y 416 (661)
+++.++.+++.+|++++|||||.+| ++|+|+|||+++|.+|++++++++.++.+.. .++.+.++.++..++.|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999887766553 46778999999999999
Q ss_pred HHHHHHHHHhhcc
Q 006102 417 TMVAISVLILRYV 429 (661)
Q Consensus 417 ~~v~~~~i~lR~~ 429 (661)
.+..++.++.|++
T Consensus 397 ~~~~~~~l~~~~~ 409 (482)
T TIGR00907 397 VIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHhcCC
Confidence 9988777654443
No 29
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.1e-43 Score=395.99 Aligned_cols=384 Identities=22% Similarity=0.315 Sum_probs=294.5
Q ss_pred cccccccccccCHHHHHHHHHhhh-hhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHH
Q 006102 41 ERSHQKLAKNLTIPHLVAIGVGST-IGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHY 119 (661)
Q Consensus 41 ~~~~~~l~r~L~~~~l~~l~ig~~-iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y 119 (661)
.++++||||+++.++.+.++++.+ ++.|++.+.+... ..+||+.+++|+++++.+++.+++++|+++++|.+||.|.|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGY-GFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 356678999999999999999986 8999999999754 57999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC---hhhHhhhccCCCCccchhHHHHHHHHHHHHHH
Q 006102 120 SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS---LPFFMARQQIPGLGIIVDPCAAILVLIVTGLL 196 (661)
Q Consensus 120 ~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~ 196 (661)
+++.+||.+||++||.+++++....++.+.+...++..+...... .|.+. .+...+...+++.+++++++++|
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT----SPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc----CCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776666655555433211000 00000 00001122345677778899999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC-CCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhh
Q 006102 197 CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (661)
Q Consensus 197 ~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~-~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~ 275 (661)
++|+|.+++++++.+.++++.++++++.++.+.+.+.-..+.. .++..+....+++.+....+|+|.|+|.+++++||+
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~ 239 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET 239 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 9999999999999999999887777766654432111000100 111222223456777778899999999999999999
Q ss_pred cCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCCHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhhhc
Q 006102 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSIL 352 (661)
Q Consensus 276 knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~--~~~~~~~~~a~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~ 352 (661)
|||+||+|||++.++.++.++|.+..++.....|..+ ...+++...++.+ .|.++. .++...++++.+++.++.+.
T Consensus 240 knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 240 KNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777776665422 1112223334444 344544 45556677888999999999
Q ss_pred hhhHHHHHHHhcCCCcc--ccccccccccCcchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 353 PQPRILMAMARDGLLPP--FFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVLI 425 (661)
Q Consensus 353 ~~sR~l~ama~dg~lP~--~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-----~~~~L~~l~s~~~l~~y~~v~~~~i~ 425 (661)
+.+|++|+|||||.+|+ +|+|+|||+++|.+|+++.++++.++.++. .++.+.++.+++..++|.+..++.+.
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~ 398 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLL 398 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999994 899999988999999999999988766553 25678888888999999999888887
Q ss_pred hhccC
Q 006102 426 LRYVP 430 (661)
Q Consensus 426 lR~~~ 430 (661)
.|++.
T Consensus 399 ~~~~~ 403 (475)
T TIGR03428 399 RRLRG 403 (475)
T ss_pred HHHhc
Confidence 77553
No 30
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=3.8e-42 Score=384.95 Aligned_cols=369 Identities=22% Similarity=0.260 Sum_probs=272.5
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhccCC-CCccHHHHHHHHhc
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP-SAGSAYHYSYICVG 125 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~-~l~~al~~aElas~~P-~~Gg~y~y~~~~~G 125 (661)
+|+++.++++++.++.+.+ ++..+. . ...|++.+..|++++++ .++.++|++|+++++| .+||.|.|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~-~--a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT-F--ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH-H--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5679999999999988864 444442 2 34688888888888886 6889999999999997 89999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
|.+||+++|.+|+...+..++........+...+. .|.. ....+..-+..++++++++++|++|+|.+++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~~------~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPAL------NEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cchh------ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876544433222222222221 1111 0011112223456677889999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhhcccccCCCC-CCCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCc
Q 006102 206 AQAIVTTANVLA-MLFVIIAGSYLGFKTGWSG-YELPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (661)
Q Consensus 206 ~~~i~~~~~l~~-ll~iii~g~~~~~~~~~~~-~~~~~~~~p~-g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~i 282 (661)
++++...+.++. ++++++.+......++... ..+.+++.|. .-.+.+..+...+|+|.|+|.+++.+||+|||+||+
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998876655443 4444444433222222110 0111233332 112334455556899999999999999999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH----HHHcC--chHHHHHHHHHHHHHHHHHHHhhhchhhH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSA----FASHG--MHWASYVITIGAVTALCSTLMGSILPQPR 356 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a----~~~~g--~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (661)
|||++.+++++.++|.+..+.+...+|+++++..++..+. +...+ .+|...++.+..+++.+++.++++.+.+|
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888898887655444333 33333 36777788889999999999999999999
Q ss_pred HHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006102 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 357 ~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~---------~~~~L~~l~s~~~l~~y~~v~~~~i~lR 427 (661)
+++++||||.+|++|+|+||+ ++|.+|++++++++.++.++. .+..+.++.++..++.|.++.++.+++|
T Consensus 308 ~l~~~ardg~lP~~~~k~nk~-~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMNKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999966 999999999999887654331 1334567788889999999999999999
Q ss_pred ccCCC
Q 006102 428 YVPPD 432 (661)
Q Consensus 428 ~~~~~ 432 (661)
+|+|+
T Consensus 387 ~k~p~ 391 (507)
T TIGR00910 387 LKHPD 391 (507)
T ss_pred HhcCC
Confidence 98876
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=4.4e-42 Score=383.09 Aligned_cols=371 Identities=20% Similarity=0.298 Sum_probs=274.9
Q ss_pred cccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 49 r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~-l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
|+++.++++++.+..+.+.... + +....|++.+++|++++++. ++.++|++|+++++|++||.|.|+++++||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~---~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--P---AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--h---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4599999999998877654332 2 22347999999999999865 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006102 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (661)
Q Consensus 128 ~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~ 207 (661)
+||++||.+|+++.+..++.....+..+..+.......|. .+...+.....+++++++++++|.+|+|.+++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDES------LAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcc------cccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999775554333222222222111000000 0111122223455666678899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhhcccccCCCCCC-CCCCCCCc--hhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcc
Q 006102 208 AIVTTA-NVLAMLFVIIAGSYLGFKTGWSGYE-LPTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (661)
Q Consensus 208 ~i~~~~-~l~~ll~iii~g~~~~~~~~~~~~~-~~~~~~p~--g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP 283 (661)
++...+ ++++++++++.++......+-.... +.+++.|. ++.++..+. ..+|+|.|+|.++..+||+|||+||+|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchh
Confidence 987554 4555566666555431111100000 00112222 233333333 468999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 006102 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTP----ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (661)
Q Consensus 284 ~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~----~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (661)
||++.++.++.++|++.++++.+.+|+++....++ +.++++..|.++...++.+..+++.+++.++++.+.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888654333 44555666778888888888999999999999999999999
Q ss_pred HHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc----C----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006102 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM----D----VSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 360 ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~----~----~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~ 431 (661)
+|||||.+||+|+|+||+ ++|.+|++++++++.++.++. + ++.+.++.+...++.|.+.+++.+++|+|+|
T Consensus 309 a~ardg~lP~~~~kv~k~-~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTNKN-GMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccCCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999965 999999999988765433221 2 4568888888899999999999999998776
Q ss_pred C
Q 006102 432 D 432 (661)
Q Consensus 432 ~ 432 (661)
+
T Consensus 388 ~ 388 (474)
T TIGR03813 388 D 388 (474)
T ss_pred C
Confidence 5
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-42 Score=381.11 Aligned_cols=377 Identities=38% Similarity=0.586 Sum_probs=321.6
Q ss_pred ccccccccCHHH-HHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Q 006102 44 HQKLAKNLTIPH-LVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (661)
Q Consensus 44 ~~~l~r~L~~~~-l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~ 122 (661)
+++++|+++.++ +..++++.++|.|+|...+..+.. + +...++|+++++...+.+++|+|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~ 84 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKR 84 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhh
Confidence 345889999999 999999999999999999987644 3 6655669999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 123 ~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
.+|+..||.++|.+++.|....++.+.....++..+++..... . .+. +...+++.+++++++++|.+|+|.
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~--~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL----S---IGP--LLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh----c---CCc--hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999988877776532100 0 000 233456889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~i 282 (661)
+++++.+.+.+++++++++.+.++.....++.+......+ ......+++.++...+|+|.|+|.+++++||+|||+|++
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999998887665543222111111 112344788899999999999999999999999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---CHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD---TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~---~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (661)
||+++.++++++++|++.+++.....|++++... .|+..+++..++.+...++.+.++.+.+++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998654432 7888888888888999999999999999999999999999999
Q ss_pred HHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006102 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (661)
Q Consensus 360 ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-----~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~ 432 (661)
+|||||.+|++|+|+|+++++|.++++++++++.++.... .++.+.++.+.+.++.|.+.+++.+.+|+++++
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 392 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD 392 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999998899999999999998333332 257899999999999999999999999998654
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=8.7e-42 Score=376.09 Aligned_cols=366 Identities=32% Similarity=0.525 Sum_probs=309.2
Q ss_pred cCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCccHHHHHHHHhchhHH
Q 006102 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (661)
Q Consensus 51 L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~-l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~g 129 (661)
++++|+++++++.++|+|++..+ ....+|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999999877 33568999999999998887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006102 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (661)
Q Consensus 130 fi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i 209 (661)
|+++|.+++.|....++......+++...++. .. ...++...+++++++++++.+|++|.|.+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL------NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG------TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccc-----cc------ccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999998888888777777655431 00 01112223467888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhhhhcccccCCCCC-CCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhH
Q 006102 210 VTTANV-LAMLFVIIAGSYLGFKTGWSGY-ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (661)
Q Consensus 210 ~~~~~l-~~ll~iii~g~~~~~~~~~~~~-~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii 287 (661)
.+.+++ ..++++++.++...+.+..+.. ...+.+.|.++.+++.++..++|+|.|+|.+++++||+|| ||+||+++
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 5777777777776544322210 0112345556777899999999999999999999999776 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCC----CHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHh
Q 006102 288 TALSICCALYMLVSIVIVGLVPYYEMDPD----TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (661)
Q Consensus 288 ~s~~i~~v~Yil~~~~l~~~vp~~~~~~~----~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~ 363 (661)
.+.+++.++|++.+++.....|+++.+.. ++....++..++++...++.+.++++.+++.++.+.+.+|++++|||
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999999999999999876432 25777888888889999999999999999999999999999999999
Q ss_pred cCCCccccccccccccCcchHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 006102 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE 433 (661)
Q Consensus 364 dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~------~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~ 433 (661)
||.+|++|+|+| |+++|++|+++.++++.++.... +++.+.++.++...+.|.+..++.+++|+|+|+.
T Consensus 305 d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 305 DGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp TTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred ccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 999999999999 66999999999999996654332 4678999999999999999999999999998873
No 34
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-41 Score=360.64 Aligned_cols=387 Identities=19% Similarity=0.258 Sum_probs=310.1
Q ss_pred CcccCCCcccccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006102 34 DSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSG-PALALSFLIAGIASAFSAFCYAELASRCPS 112 (661)
Q Consensus 34 ~~~~~~~~~~~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aG-p~~il~~ll~~l~~l~~al~~aElas~~P~ 112 (661)
|+++..+.+.++|+||++++++....+++.+--.--..++-.....++| |..+++|++++++.++.+++++|++|.+|.
T Consensus 33 d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt 112 (550)
T KOG1289|consen 33 DEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT 112 (550)
T ss_pred CHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC
Confidence 3333345568889999999999999999876222112222222223345 469999999999999999999999999999
Q ss_pred CccHHHHHHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHH
Q 006102 113 AGSAYHYSYICVG----EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAIL 188 (661)
Q Consensus 113 ~Gg~y~y~~~~~G----~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~i 188 (661)
+||.|.|+...-+ +..+|++||...+++....++...+.++.+....... .|.+. ...+..-.+..++
T Consensus 113 sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~--np~y~------~~~~~~~~v~~ai 184 (550)
T KOG1289|consen 113 SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT--NPNYE------PTNYHQFGVFEAI 184 (550)
T ss_pred CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc--CCCCc------ccceEeehHHHHH
Confidence 9999999998755 5688999999999999999999999998887765421 12221 1223334567888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--------CCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 006102 189 VLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT--------GWSGYELPTGYFPFGVNGMLAGSATVFF 260 (661)
Q Consensus 189 i~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~--------~~~~~~~~~~~~p~g~~gi~~~~~~~~f 260 (661)
.++.+++|+...|..++++.+...++++.+++.+|......... -|..++|.+++.+.||. ++.++....|
T Consensus 185 ~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f~~~~w 263 (550)
T KOG1289|consen 185 LFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGFFNPAW 263 (550)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhhcccee
Confidence 99999999999999999999999999998887777765543222 14455666778777876 6666888899
Q ss_pred HhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCC---CC--CCCHHHHHHHHcCchHHHHHH
Q 006102 261 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE---MD--PDTPISSAFASHGMHWASYVI 335 (661)
Q Consensus 261 af~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~---~~--~~~~~~~a~~~~g~~~~~~iv 335 (661)
.+.|+|+.++++||+|||+|+.||||+.++.+..++-.+..+.+...+|.+. .+ ...|+.+.+.+..++-....+
T Consensus 264 t~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~ 343 (550)
T KOG1289|consen 264 TMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFL 343 (550)
T ss_pred EEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEeh
Confidence 9999999999999999999999999999999999999999999999888532 12 247999999888776666788
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhc-----CHHHHHHHH
Q 006102 336 TIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMV 408 (661)
Q Consensus 336 ~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~-----~~~~L~~l~ 408 (661)
....+++.+.+..+.+.++||+.|+.||||-|| ++++++||++++|.+|+++..+++.++.++. .++.+.+..
T Consensus 344 ~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a 423 (550)
T KOG1289|consen 344 LSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAA 423 (550)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888889999999999999999999999999 9999999999999999999999999877665 266677777
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 006102 409 SVGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 409 s~~~l~~y~~v~~~~i~lR~~ 429 (661)
.++..++|....++.+.++|+
T Consensus 424 ~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 424 AIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHHHHHhHHhheeeccc
Confidence 788888888776655555544
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=4.1e-39 Score=360.85 Aligned_cols=373 Identities=17% Similarity=0.205 Sum_probs=269.9
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhccCCC-CccHHHHHHHHh
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~-~l~~al~~aElas~~P~-~Gg~y~y~~~~~ 124 (661)
++|+|++++++++++++++|.+.. +. +...+||+.++.+++++++ .++.++|++|+++++|+ +||.|.|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~~--~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--PR--AFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--HH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 578899999999999999997632 22 2235799988888887766 57899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGI-SPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~-~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
||.+||+++|.++.++.......+... .......++... .+.+.. .. ........+++++.+++++++|.+|+|.+
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDT-TQTWHF-LG-LNSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhhhh-hc-ccchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 999999999999888877554333221 111111222110 000000 00 00111122446666668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhc-ccccCC------CCCCC-CCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAG-SYL-GFKTGW------SGYEL-PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g-~~~-~~~~~~------~~~~~-~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E 274 (661)
++++++.+.++++..+++++.+ ... ....+. +++.+ +++..+ +..+++.++..++|+|.|+|.+++.+||
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQ-SPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccc-cchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999998888765433222211 111 111111 11100 000000 1145788888899999999999999999
Q ss_pred hcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-------CHHHHHHHHc-----------------CchH
Q 006102 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFASH-----------------GMHW 330 (661)
Q Consensus 275 ~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~-------~~~~~a~~~~-----------------g~~~ 330 (661)
+|||+|++|||++.++.++.++|++..+.+....|+++.... .|+. +.+.. .+.+
T Consensus 237 ~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~ 315 (496)
T PRK15238 237 TENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVW 315 (496)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHH
Confidence 999999999999999999999999999888888887765321 1221 12221 1245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcC---------H
Q 006102 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD---------V 401 (661)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~---------~ 401 (661)
+..+++++.+++.+++.++..++.+|.++.+++||.+||+|+|+||+ ++|.+|++++++++.++..... +
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~-g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f 394 (496)
T PRK15238 316 FARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKN-GMPANAMWLQCIIVSVFILLVSFGGDAASAFF 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 55677888999999999999999999999999999999999999965 9999999999887775533321 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006102 402 SALAGMVSVGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 402 ~~L~~l~s~~~l~~y~~v~~~~i~lR~~ 429 (661)
+.+.++.++..++.|.+++++.+++|++
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6799999999999999999999999874
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.8e-43 Score=393.31 Aligned_cols=364 Identities=29% Similarity=0.465 Sum_probs=301.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHH
Q 006102 57 VAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (661)
Q Consensus 57 ~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~ 135 (661)
.++++|+++|.|.|...+... ..+|| +.++++++++++.++++.+++|+++++|++||.|.|+++.+||..|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 457899999999999999866 45777 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChh-hHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006102 136 LILEYTIGGSAVARGISPNLAMLFGSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTAN 214 (661)
Q Consensus 136 ~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~ 214 (661)
+++.|+...+......+.+++.+-. ....| .+. +.++++.+++++++.+|++|+|.+++++.++..+|
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGY-FPGLPSTWV----------WGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccc-ccccccccc----------ccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 9999999988888777766654410 11111 110 00134678888899999999999999999999999
Q ss_pred HHHHHHHHHhh-hhcccc-cCCCC--CCCCC---CCCCc--------hhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc
Q 006102 215 VLAMLFVIIAG-SYLGFK-TGWSG--YELPT---GYFPF--------GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 215 l~~ll~iii~g-~~~~~~-~~~~~--~~~~~---~~~p~--------g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~ 279 (661)
++.++.+++.+ ...... ++.+. +.++. +..|. ++.+++.++..++|+|.|+|+++.++||+|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99998888888 322111 11111 01111 12233 388999999999999999999999999999999
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------CHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhch
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD------TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~------~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (661)
|++|||+..++++++++|++.+.+++..+|+++.... +|+..+.+..+.+++..++.++.+++.+++.++.+++
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999885322 4899999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006102 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 354 ~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~------~~~L~~l~s~~~l~~y~~v~~~~i~lR 427 (661)
.+|++++|||||.+|+++.+.|+|+|+|++|++++++++.+..+... ++.+.++.++..++.|.+++++.+++|
T Consensus 311 ~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r 390 (478)
T PF00324_consen 311 ASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFR 390 (478)
T ss_pred cceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhh
Confidence 99999999999999966666666779999999999998887664432 345778888999999999999999888
Q ss_pred ccCCC
Q 006102 428 YVPPD 432 (661)
Q Consensus 428 ~~~~~ 432 (661)
++.+.
T Consensus 391 ~~~~~ 395 (478)
T PF00324_consen 391 KKFKY 395 (478)
T ss_pred hhhcc
Confidence 87543
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=100.00 E-value=6.4e-31 Score=285.42 Aligned_cols=345 Identities=17% Similarity=0.111 Sum_probs=279.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHH
Q 006102 58 AIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALI 137 (661)
Q Consensus 58 ~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~ 137 (661)
++.+|+++|+|++.+++..+ ..+++..++..+++++.+...+++++|+++++|++||.|.|+++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 46789999999999999865 44555666677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006102 138 LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA 217 (661)
Q Consensus 138 l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ 217 (661)
+.+....+++....++++..++...... .. .....++++.+++..++.+|.|..+++|.+++..+++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~----------~~--~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF----------PW--SARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC----------Cc--cHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 9988888888888888888776421100 00 11234667777888999999999999999999999999
Q ss_pred HHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhh-HHhcchhhhcCcccCcchHhHHHHHHHHHH
Q 006102 218 MLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFD-AVASTAEEVKNPQRDLPLGIGTALSICCAL 296 (661)
Q Consensus 218 ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e-~ia~~a~E~knP~k~iP~aii~s~~i~~v~ 296 (661)
++++++.++.+.+.+|+.+.. ..+.++.+++.++...+++| |+| .++...+|.++++|++||+++.+..+++++
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~l 225 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVA----LDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVL 225 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCc----cccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 988888887766655554321 11345677888888999999 665 688889999877999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCC-------CCCHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCc
Q 006102 297 YMLVSIVIVGLVPYYEMD-------PDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (661)
Q Consensus 297 Yil~~~~l~~~vp~~~~~-------~~~~~~~a~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP 368 (661)
|++..++..+.+|++++. +.+++.++++. .+.++...++.++.++++.++.++...+.++.+ +
T Consensus 226 Y~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l---------~ 296 (381)
T TIGR00837 226 YILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYL---------A 296 (381)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 999999999999998763 22466667766 577888999999999999999999887777443 4
Q ss_pred cccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 006102 369 PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (661)
Q Consensus 369 ~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~ 430 (661)
+.+++.+++ +.|..+.+++.+...+++.+.+...+..+.+.|.+.++....+..+..++.|
T Consensus 297 ~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r 357 (381)
T TIGR00837 297 DLFKFDDSK-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKAR 357 (381)
T ss_pred HHhCCCccc-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 3377888999999999998899999999999998888888888887775433
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=226.92 Aligned_cols=373 Identities=16% Similarity=0.259 Sum_probs=273.4
Q ss_pred ccCHHHHHH-HHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHhch
Q 006102 50 NLTIPHLVA-IGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVGE 126 (661)
Q Consensus 50 ~L~~~~l~~-l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~~G~ 126 (661)
++|.+-.+. =++-++.|.-.|...-.+. ..||-. .++..++.+...++++.+++.+++.--. +||.|..++|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvV-G~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVV-GMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 465543333 3677788888887776654 456654 5666677888888999999999998654 69999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCChh-hHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLF-GSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~-~~~~~~p-~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
.+|-.+|.+.+++..++.+.+..+..+.+-..+ .....+. .-... .........++.+.+++++.+++...|+|...
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~-~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vn 270 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHD-EAAAMLNNLRVYGTVFLILMALIVFVGVKFVN 270 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCcccccc-chhhhhcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888765432 1100000 00000 00111122345688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc------------------------------cC---------------------
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLGFK------------------------------TG--------------------- 233 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~~~------------------------------~~--------------------- 233 (661)
++..++..+.++.++.+.+.++-.... .|
T Consensus 271 k~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~ 350 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDE 350 (1075)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCccccc
Confidence 999988888888887777766542111 00
Q ss_pred -------------------------CCCCCCCCCCC---------------Cchh----HHHHHHHHHHHHHhhhhhHHh
Q 006102 234 -------------------------WSGYELPTGYF---------------PFGV----NGMLAGSATVFFAFIGFDAVA 269 (661)
Q Consensus 234 -------------------------~~~~~~~~~~~---------------p~g~----~gi~~~~~~~~faf~G~e~ia 269 (661)
|+.+-..+.+. |+-. ..+..-+.+.|-+..|.-+-+
T Consensus 351 y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGS 430 (1075)
T KOG2082|consen 351 YFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGS 430 (1075)
T ss_pred ccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecC
Confidence 00000000000 1101 123333445677889999999
Q ss_pred cchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHH-c---CchH-HHHHHHHHHHHHHH
Q 006102 270 STAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFAS-H---GMHW-ASYVITIGAVTALC 344 (661)
Q Consensus 270 ~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~-~---g~~~-~~~iv~i~~~~~~~ 344 (661)
+.+++.|||||+||.+.+.+.+++..+|+...+...+.+....+.+ -+.+.... . ...| -.|++.+|.+++.+
T Consensus 431 NrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRD--KfG~sv~g~lVva~laWPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 431 NRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRD--KFGQSVGGNLVVATLAWPSPWVIVIGSFLSTC 508 (1075)
T ss_pred CCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhh--hhhhhccCcEEEEEecCCCceeeehhHHHHHh
Confidence 9999999999999999999999999999998888877765322211 01111000 0 0011 35789999999999
Q ss_pred HHHHhhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 006102 345 STLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAIS 422 (661)
Q Consensus 345 ~s~~~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~ 422 (661)
++.+.++.+.+|+|.+.|||+.+| +.|++.+++ |-|..|++++.+++-..+++.+++.+..+.++.++++|.+++++
T Consensus 509 GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 509 GAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred HHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999 999999988 99999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q 006102 423 VLILR 427 (661)
Q Consensus 423 ~i~lR 427 (661)
+.+..
T Consensus 588 Cavqt 592 (1075)
T KOG2082|consen 588 CAVQT 592 (1075)
T ss_pred HHHHH
Confidence 87654
No 39
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.91 E-value=6.8e-21 Score=205.24 Aligned_cols=286 Identities=15% Similarity=0.168 Sum_probs=226.5
Q ss_pred ccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHH
Q 006102 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (661)
Q Consensus 50 ~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~g 129 (661)
+++.+|.+++.++.++|+|++..++..+ +.+|+..+++++++++.+++.+++++|+++++|+. |.+.|.++.+|+..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 5899999999999999999999999866 56888999999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006102 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (661)
Q Consensus 130 fi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i 209 (661)
++.+|.+++......+...+..++++..... ...|.+ ..+..+++++...+..|++..+|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~tp~~--------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLL--PRTPII--------------VIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHH--------------HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999988777777777777777655432 112322 246677778888999999999999999
Q ss_pred HHHHHHHHH-HHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHH-HHHHHhhhhhHHhcchhhhcCcccCcchHhH
Q 006102 210 VTTANVLAM-LFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSA-TVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (661)
Q Consensus 210 ~~~~~l~~l-l~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~-~~~faf~G~e~ia~~a~E~knP~k~iP~aii 287 (661)
...++++.. +++........+.+|.. +..+.|+.+++.+.. ...|+|.|+|......+|+||| |+.||++.
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~l~------P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~ 216 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKNLL------PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSII 216 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHcc------CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHH
Confidence 999887773 43433333322233332 344567777888876 8899999999999999999996 56999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCch-H---HHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 288 TALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH-W---ASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 288 ~s~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~-~---~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
.++.+++++|++..++..+..|+++.. ...|..+..+....+ . ...++...-+.+.+......+++.++.+-.
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988874 457888888876543 2 334555555566666666667676666543
No 40
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.89 E-value=8.5e-22 Score=211.77 Aligned_cols=378 Identities=19% Similarity=0.229 Sum_probs=281.4
Q ss_pred ccCHHHHHHHHHh-hhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHhch
Q 006102 50 NLTIPHLVAIGVG-STIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVGE 126 (661)
Q Consensus 50 ~L~~~~l~~l~ig-~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~~G~ 126 (661)
+|++++..+.=.. +|...=.|...|.+. ..+|-. .++-++++-.+.+++.++...+++.--. .||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIv-G~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIV-GQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7777765544222 244444677777655 456765 5555667777888899999999988765 68999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
.+|--+|....++.+..++....++.+-+-+.++.....+ -.....|.-.|+.-+.+.++..++..+.++|....++.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~--sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGA--SGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCC--cccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999999888877776322111 01123344455555668888889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccC-----------------------CCCCCCC------CCCCCchhHHHHHHHHH
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTG-----------------------WSGYELP------TGYFPFGVNGMLAGSAT 257 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~-----------------------~~~~~~~------~~~~p~g~~gi~~~~~~ 257 (661)
.++........+.-+.+..++....++ |+...++ .+...-+...+-..+.+
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 877655544333333332222111111 1000000 00111122334445556
Q ss_pred HHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHH
Q 006102 258 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITI 337 (661)
Q Consensus 258 ~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i 337 (661)
.|-+-.|.-+-+++++|.|+|.|.|||+.+.++..+.++|+++.+.+....|+..+..+-.+. +.+ .....++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~---~~i--sl~p~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM---MHI--SLHPPFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhhe---eec--cccchHHHH
Confidence 677889999999999999999999999999999999999999999999999987765443222 111 223468888
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006102 338 GAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLA 415 (661)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~ 415 (661)
|++.+.+.+.++.+.+.+|++-++|||.++| ..|+|...+.+.|+.|+.++.+++-++.+.++++.++.+.++.+++.
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 67788877779999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCC
Q 006102 416 FTMVAISVLILRYVP-PDEVP 435 (661)
Q Consensus 416 y~~v~~~~i~lR~~~-~~~~p 435 (661)
|..++++++.++... |+.||
T Consensus 458 y~~vNLacl~LeissAPNFRP 478 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRP 478 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCc
Confidence 999999999998764 56554
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.85 E-value=2.8e-19 Score=177.91 Aligned_cols=278 Identities=18% Similarity=0.175 Sum_probs=186.3
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
.++|.|+.+.+|..+..++.+.+......+...+....|+..+++|+++++++++.++||+|+++++|++||.|.|.+|+
T Consensus 7 SSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRA 86 (399)
T PHA02764 7 SSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTA 86 (399)
T ss_pred cCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHh
Confidence 45799999999999999988743322222222233346778999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 124 ~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
+||.+|++.||..|+.+..+.++.+.--. + + ....|.. . . +.-..-.+....+...|.|.+
T Consensus 87 FGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~----~-~~i~~~~-~---------~--f~~~~s~~~i~~~i~~~~~~~ 147 (399)
T PHA02764 87 FSSKFYTIFGISLWLTYVLSQPILGDLVL--L----N-FNIQNQF-E---------Q--FLIVESLFPIVLLIIANKKIY 147 (399)
T ss_pred hCccHHHHHHHHHHHHHHhhcchhhheee--e----e-eeeHHHH-H---------H--HHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999999887766543211 0 0 0001111 0 0 011111222334445667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhH-HHHHHHHHHHHHhhhhhHHhcchhhhcCcccCc
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVN-GMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~-gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~i 282 (661)
+|.-.+......+.. + +.....-|+. ...+..+ .+..+.....-+|.=.|+....++|.||-+|+.
T Consensus 148 ~~~v~il~~a~~i~a---i---f~~~~s~n~~-------~~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~ 214 (399)
T PHA02764 148 AKIVDILAIAQIIIA---I---FIAFKSFNFQ-------YQNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSS 214 (399)
T ss_pred HHHHHHHHHHHHHHH---H---HhhccceeEE-------EcceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhh
Confidence 887766544443311 1 1111111221 0111122 134455556677888899999999999999999
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (661)
..|-..|..++.++-+..+ |.+ + .+..+.+....++-+....--+||++++|+
T Consensus 215 ~~gyf~s~~~~~~~~ii~s--------y~n------~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~ 267 (399)
T PHA02764 215 MIGYFVSYGIVAILSIIDS--------YSN------L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMS 267 (399)
T ss_pred hhhhHHHHHHHHHHHHHHh--------hhh------H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHH
Confidence 9999999888777666554 111 1 112222444455556666677999999999
Q ss_pred hcCCCccccccccccccCcc
Q 006102 363 RDGLLPPFFSDVNKTTQVPV 382 (661)
Q Consensus 363 ~dg~lP~~f~~~~~~~~~P~ 382 (661)
-|+.+|+.|+|+|| ++|.
T Consensus 268 fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 268 FDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred hhhhchHHHhccCC--Ccee
Confidence 99999999999998 4777
No 42
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.82 E-value=1.3e-20 Score=139.91 Aligned_cols=51 Identities=49% Similarity=1.026 Sum_probs=50.5
Q ss_pred ccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhccccc
Q 006102 569 FMCPFVPLLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHS 619 (661)
Q Consensus 569 f~~P~~P~~P~~si~~n~~lm~~l~~~t~~~~~vw~~ig~~iY~~yg~~hs 619 (661)
||||++|++|++||++|+|||.+|+..||+||++|+++|+++||.||+|||
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 799999999999999999999999999999999999999999999999998
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.80 E-value=9.9e-17 Score=171.25 Aligned_cols=336 Identities=14% Similarity=0.134 Sum_probs=249.4
Q ss_pred HhhhhhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHH
Q 006102 61 VGSTIGAGVYILVGTVAREHSGP--ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (661)
Q Consensus 61 ig~~iG~Gif~~~g~ia~~~aGp--~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l 138 (661)
++--.|+|.+..+..+..+.+.+ ...++|+++++...+.+++ .+|++||.|.+..+.+||.+|++.+|..++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 34458999999999877664444 2688999999998888888 899999999999999999999999999887
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006102 139 EYTIGG-----SAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTA 213 (661)
Q Consensus 139 ~~~~~~-----aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~ 213 (661)
...... ++.+...+ +..+++... .....-+.++++..+..++++++.|...+++++++.+
T Consensus 79 ~iGP~~aiPRtaa~s~e~~--i~p~~~~~~-------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~ 143 (378)
T TIGR00796 79 TIGPLFAIPRTATVSFEMG--IAPLLHSPT-------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPA 143 (378)
T ss_pred HHHhchhhhHHHHHHHHHH--HHhccCccc-------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHH
Confidence 655432 22222111 222221100 0011113456666667779999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhh-------hhhHHhcchh-hhcCcccCcchH
Q 006102 214 NVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFI-------GFDAVASTAE-EVKNPQRDLPLG 285 (661)
Q Consensus 214 ~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~-------G~e~ia~~a~-E~knP~k~iP~a 285 (661)
+++.++++++.++.+...+ ..+ +.+++.. + ..+..|+.-..+.+. |+-.+.++.+ |.|||+|+.|+.
T Consensus 144 lLi~l~~lii~g~~~p~g~-~~~--~~~~~~~-~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~ 218 (378)
T TIGR00796 144 LLVTLLALIIKALLWPAGP-ILA--ASGAYAS-Q-QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYT 218 (378)
T ss_pred HHHHHHHHHHHHHHcCCCC-cCC--ccccccc-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999864322 111 1111111 0 235666777788888 8888888888 999999999999
Q ss_pred hHHHH-HHHHHHHHHHHHHHHhcccCCCCC----CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 286 IGTAL-SICCALYMLVSIVIVGLVPYYEMD----PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 286 ii~s~-~i~~v~Yil~~~~l~~~vp~~~~~----~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
+..++ ..+.+.|+-..++..+..+.++.. ..+...++.++.-++.+..++.+.+.++++++.++...+.++
T Consensus 219 i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~---- 294 (378)
T TIGR00796 219 IKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE---- 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999 777888888888888888765442 344667778888889999999999999999999998777444
Q ss_pred HHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCC-CCCCC
Q 006102 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLI--LRYVPPD-EVPVP 437 (661)
Q Consensus 361 ma~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~--lR~~~~~-~~p~~ 437 (661)
+|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-...+.++. +|++.|+ ++|++
T Consensus 295 ---------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~ 363 (378)
T TIGR00796 295 ---------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQ 363 (378)
T ss_pred ---------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Confidence 45556553 8999998888888877778899999998887777777776666666 7777766 55554
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.80 E-value=7.4e-16 Score=166.95 Aligned_cols=324 Identities=19% Similarity=0.194 Sum_probs=252.4
Q ss_pred ccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhH
Q 006102 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (661)
Q Consensus 50 ~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~ 128 (661)
+-+.+..+++.+|+.+|+|+..+|-..+ .+|- ...+..++++..+..+++.++|...+.|+..+.-+-+++.+|+.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 4567888899999999999999997643 3564 467778889999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD--SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 129 gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
+++++..+.+.......++..+.++.++.+++... ..+.. ....++.+++..+.+.|.|...++
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~--------------~~~~~f~~i~~~iv~~g~~~v~~~ 145 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPW--------------LSSLLFTIIFGGIVYFGTKAVDRI 145 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHH--------------HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999888888888999999998888876322 11111 235667777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHh
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~ai 286 (661)
|..+...+++.++++++.++.+.+.++.... +..+..+..++..+++.+++|.-...++.+.+..++-+|.++|++
T Consensus 146 n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~----~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai 221 (394)
T PF03222_consen 146 NRVLVFGMIISFIILVVYLIPHWNPSNLLDA----PPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAI 221 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHhhcc----ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHH
Confidence 9999999999999999888887666555421 112345778899999999999999999999999997678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCC----CCC---CHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 287 GTALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 287 i~s~~i~~v~Yil~~~~l~~~vp~~~~----~~~---~~~~~a~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
+.+..+..++|++..++..+.+|.++. +.+ +++..+.++ .+.++...+..+...+++.+|.++...+....+
T Consensus 222 ~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l 301 (394)
T PF03222_consen 222 IIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFL 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987753 122 345555554 467888899999999999999999888877766
Q ss_pred HHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHH
Q 006102 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSA 403 (661)
Q Consensus 359 ~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~ 403 (661)
...= | +.|++ +.-.....++.+...+++...+-..
T Consensus 302 ~d~~------k---~~~~~-~~r~~~~~ltf~ppl~~a~~~p~~F 336 (394)
T PF03222_consen 302 ADLF------K---LKNNS-SGRLKTWLLTFLPPLIFALLFPNGF 336 (394)
T ss_pred HHHH------c---CCccc-cchHHHHHHHHHhHHHHHHHCcHHH
Confidence 4321 1 11111 1223344555566666666665433
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.77 E-value=5e-16 Score=168.01 Aligned_cols=286 Identities=16% Similarity=0.083 Sum_probs=217.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHH----HHhccCCC-CccHHHHHHHHhchhHHHH
Q 006102 57 VAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYA----ELASRCPS-AGSAYHYSYICVGEGVAWL 131 (661)
Q Consensus 57 ~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~a----Elas~~P~-~Gg~y~y~~~~~G~~~gfi 131 (661)
+...+|.++|+|++.+|.. +|...+++++++++.+++.++.++ |.....|. ..+.+.++++.+|+..|.+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 3456778999999999986 244446666777766666555544 44333344 5789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006102 132 IGWALILEYTIGGSAVARGISPNLAMLFGSAD--SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (661)
Q Consensus 132 ~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i 209 (661)
.++.|++.......+++.+.++.+.+++.... ..|.. -+.++++++++..++..|.|...|++.+
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~-------------~i~~lilv~il~~iv~~G~~~i~r~~~i 150 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLR-------------GLLSLALILILVAIMSFGEKLLFKIMGP 150 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-------------HHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999988888888888877764211 11111 1246667777789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcch----hhhcCc---ccCc
Q 006102 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA----EEVKNP---QRDL 282 (661)
Q Consensus 210 ~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a----~E~knP---~k~i 282 (661)
+...+++.++++.+....+.+.++..... ....++..++.+++..+|+|.|+|.++.++ +|.+|| +|..
T Consensus 151 l~~~~ii~l~~l~~~lip~~~~~~L~~~p----~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 151 LVFPLVLILVLLSLYLIPHWNGANLTTFP----SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCC----cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 99999999888888888776666654211 111245779999999999999999999998 667655 4677
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCCC----C-CCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD----P-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRI 357 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~----~-~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~ 357 (661)
.|++..+..+..++|++..++..+..|.++.. + .+.+....+....++...+..+...+++.+|.++...+....
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999887742 1 223444445667788888888888888888888888888877
Q ss_pred HHHHHhc
Q 006102 358 LMAMARD 364 (661)
Q Consensus 358 l~ama~d 364 (661)
+..+-++
T Consensus 307 l~~l~~~ 313 (397)
T TIGR00814 307 LNGIVLN 313 (397)
T ss_pred HHHHHHH
Confidence 7777643
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.76 E-value=2.1e-15 Score=162.19 Aligned_cols=355 Identities=14% Similarity=0.054 Sum_probs=266.5
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
|++.+.++.+++..|+++|+|++.+|-..+ .+|= ..++..++..+.+..+++++.|...++|..-+.-+.+++.+|+
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 467899999999999999999999996533 3453 3566688899999999999999999999988899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA-DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
.+..+++..+.+-......++..+.++.++..++.. ...|.+. -++++.+++..+.+.|.|...+
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~--------------~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARA--------------AGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHH--------------HHHHHHHHHHHHHHhhhhHHHH
Confidence 988888777766666667788888888888777531 1223332 3678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a 285 (661)
+|+++...|++.++..+...+.+.+.++..+... ..+..+..++.+.++.+++|.=...++.+.+..++-.|.++|+
T Consensus 152 ~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~---~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~ 228 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAE---SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKC 228 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHhcccc---ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHH
Confidence 9999999999998888777767665544432110 1112245578889999999999999999999987645689999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCC----CCC---CHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 006102 286 IGTALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRI 357 (661)
Q Consensus 286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~----~~~---~~~~~a~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~ 357 (661)
++.+..+..++|++..++..+.+|.++. ..+ +.+...+.+ .+.++...++.+.+.+++.+|.++...+....
T Consensus 229 I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~ 308 (414)
T PRK10483 229 LVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDY 308 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999996653 112 223233333 46678888889999999999988877777776
Q ss_pred HHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006102 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 358 l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~ 431 (661)
+..+-+- .+++ +-.....+++.+...++++..+-..+..+...|.........+..+..|+.|+
T Consensus 309 l~D~~k~---------~~~~-~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 309 LADLFGF---------DDSA-MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHhCC---------CCcc-ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6554331 1111 22233455677888888888887777777777766666666665555555443
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.75 E-value=5.7e-15 Score=158.67 Aligned_cols=353 Identities=12% Similarity=0.051 Sum_probs=262.7
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHH
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gf 130 (661)
+.+..+++..|+++|+|++.+|-..+ .+|- ...+..++..+.+..+++++.|...++|..-+.-+-+++.+|+.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 66678899999999999999996533 3453 36666888999999999999999999999889999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006102 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSA--DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (661)
Q Consensus 131 i~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~ 208 (661)
+++..+.+-......++..+.++.++..++.. ...|.. ..++++.+++..+.+.|.|...++|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~--------------~~~llF~~~~~~~v~~gt~~vd~~nr 153 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPR--------------IVGICTAIFVASVLWISSLAASRITS 153 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHH--------------HHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 88887766666667788888888888777521 111211 23678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHH
Q 006102 209 IVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (661)
Q Consensus 209 i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~ 288 (661)
++...+++.+++.+.....+.+.++........+ ...-+..++.++++.+++|.=...++.+....++-.|.++|+++.
T Consensus 154 ~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~-~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~ 232 (415)
T PRK09664 154 LFLGLKIISFVIVFGSFFFQVDYSILRDATSTTA-GTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVF 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHhcCccccc-cchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHH
Confidence 9999999998888888777766555432111110 011134578889999999999999999999988666889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC----CCC---CH-HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 289 ALSICCALYMLVSIVIVGLVPYYEM----DPD---TP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 289 s~~i~~v~Yil~~~~l~~~vp~~~~----~~~---~~-~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
...+..++|++...+..+.+|.++. ... +. .....++...++...+..+...+++.+|.++...+....+..
T Consensus 233 Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 233 GSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998886653 111 12 233444556788888888888888888888877666666554
Q ss_pred HHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006102 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 361 ma~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~ 431 (661)
+-+ +.+++ +-......++.+...+++++.+-..+..+...|.........+..+..|+.|+
T Consensus 313 ~~~---------~~~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 313 LFK---------IDNSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARK 373 (415)
T ss_pred HhC---------CCCcc-ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322 11111 22333455677888888888887777777777777666666666666666553
No 48
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.2e-17 Score=177.37 Aligned_cols=369 Identities=17% Similarity=0.256 Sum_probs=278.6
Q ss_pred cccCHHHHHHH-HHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHhc
Q 006102 49 KNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (661)
Q Consensus 49 r~L~~~~l~~l-~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~-~Gg~y~y~~~~~G 125 (661)
-++||||.++. +.-++.|.-.|...+.+. ..||-. .++...++.++++.++++-.-++++--. +||.|..+++.+|
T Consensus 28 v~fg~~~gv~~~cmlni~gv~lflrl~wiv-gqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 28 VLFGWWDGVFVRCMLNIFGVILFLRLGWIV-GQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred eEEeeeehhhhhhhHHHHHHHHhhhhhhee-ecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 35899988776 445567887888888765 446764 5666677888899999999999998775 7999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
+.+|--.|..+.++..++.+.+..++++....++.... . +.+|-++.+.++++..++..|+++..+
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s---~-----------~~i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES---K-----------EMIDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc---H-----------HHhcchhHHHHHHHHHhhhccchhHHH
Confidence 99999999999999999999999999999998886331 1 122335788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc--ccCCCCCC---CCCCCCCc--hhHHHHHHHHHHHHHhhhhhHHhcchhhhcCc
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGF--KTGWSGYE---LPTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~--~~~~~~~~---~~~~~~p~--g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP 278 (661)
+|.++..+.++.+.-+++..+.... ...+..+. -.+++.|. .-..+++-+++.|-+..|.-+-++++++.|+|
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 9999888888777777766655322 11111110 01112221 01245666677788999999999999999999
Q ss_pred ccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCC-------CCCC--HHHHHHHHcC-chHHHHHHHHHHHHHHHHHHH
Q 006102 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDT--PISSAFASHG-MHWASYVITIGAVTALCSTLM 348 (661)
Q Consensus 279 ~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~-------~~~~--~~~~a~~~~g-~~~~~~iv~i~~~~~~~~s~~ 348 (661)
++++|+|.+.+....+.+|.....-+....-.+.. +++. .+.+-++..- .....-....+...+.+++..
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsal 332 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSAL 332 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHH
Confidence 99999999999999999998776554433222211 1101 2222222221 122334667788888889999
Q ss_pred hhhchhhHHHHHHHhcCCCc--cccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006102 349 GSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLIL 426 (661)
Q Consensus 349 ~~~~~~sR~l~ama~dg~lP--~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~l 426 (661)
+.+.+.++++.++.+|+..| .+++|-..+.+.|.++..++...+.....+.+.+.+..+.+...+.+|.+...+++.-
T Consensus 333 sslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~a 412 (643)
T KOG2083|consen 333 SSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHA 412 (643)
T ss_pred HHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhh
Confidence 99999999999999999999 6778777777899999999999998888888999999999999999999998888865
Q ss_pred hccCCC
Q 006102 427 RYVPPD 432 (661)
Q Consensus 427 R~~~~~ 432 (661)
+.+.++
T Consensus 413 Sl~~s~ 418 (643)
T KOG2083|consen 413 SLAISE 418 (643)
T ss_pred hhcccc
Confidence 555443
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.73 E-value=2.9e-14 Score=154.00 Aligned_cols=344 Identities=16% Similarity=0.177 Sum_probs=252.5
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHH
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gf 130 (661)
+.+..+++..|+.+|+|++.+|-..+ .+|.. .++..++++.++..+++.++|.....|..-+.-+-+++.+|+..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 56778889999999999999997643 35654 5666777888899999999999888888778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006102 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSAD--SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (661)
Q Consensus 131 i~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~ 208 (661)
+++..+.+-......++..+.++.++..+++.. ..+.. ...+.+.++...+.+.|.|...++|.
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~--------------~~~l~F~~~~~~iv~~g~~~v~~~n~ 147 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPT--------------AGVLLFTLVAGGVVCVGTSSVDLFNR 147 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChH--------------HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999988777888888887777766654210 11111 23566667777788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHH
Q 006102 209 IVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (661)
Q Consensus 209 i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~ 288 (661)
++...+++.+++.+.....+.+.+++... |.+..-++.++++.+++|.=...++++....++-+|.++|+++.
T Consensus 148 ~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-------~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 148 FLFSAKIIFLVVMLALMMPHIHKVNLLTL-------PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhcC-------CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 99999999888777777776666655421 11111378889999999999999999999998777899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC----CCC---CHHHHHH-HHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 289 ALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAF-ASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 289 s~~i~~v~Yil~~~~l~~~vp~~~~----~~~---~~~~~a~-~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
+..+..++|++..++..+.+|.++. ..+ +++.+.+ +..+.++...++.+.+.+++.+|.++...+....+..
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997753 112 2333333 4467789999999999999999999988888877766
Q ss_pred HHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006102 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRY 428 (661)
Q Consensus 361 ma~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~ 428 (661)
+-+.+ +++ .......+++.+...+++.+.+-..+..+.-.|...+..+..+..+..++
T Consensus 301 ~~~~~---------~~~-~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~ 358 (403)
T PRK15132 301 LFQRR---------NTV-GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQ 358 (403)
T ss_pred HHccC---------ccc-cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54321 111 11223455666666666666654444444444444444444444333333
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.66 E-value=1.3e-13 Score=150.42 Aligned_cols=342 Identities=18% Similarity=0.129 Sum_probs=246.6
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cHHHHHHHHh
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAG-SAYHYSYICV 124 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~G-g~y~y~~~~~ 124 (661)
++++.+.++.++..+|+++|+|+...|-. ...+|-. .++..++++.++....+++.|...+.|+.. +.++-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a--~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA--FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 56677888889999999999999999854 3456654 566678899999999999999999999984 9999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
|+.++++.+..+.+.......++..+.++.+...++...... +....+..+++..++..+.+.|.+..-
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-----------~~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-----------PLPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-----------CcchHHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999999999888889998888888887775311100 012223466777777779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccC-cc
Q 006102 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD-LP 283 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~-iP 283 (661)
+.+..+...+++.++++.+....+.+.++.......+ +..+..++.+++.++|+|.+.-.+..+..|+|++.|+ ++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~ 228 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSAS---QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVR 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccc---hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHH
Confidence 9999999999999988888777665444332111111 3557788999999999999999999999999988877 99
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcccCCCC-------CCCCHHHHHH-HHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 284 LGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDTPISSAF-ASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 284 ~aii~s~~i~~v~Yil~~~~l~~~vp~~~~-------~~~~~~~~a~-~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
|++..+..+..++|+++.+...+.++...- .+.+....+. +....+.......+....++.++..+.....=
T Consensus 229 k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~ 308 (415)
T COG0814 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLF 308 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHH
Confidence 999999999999999999999999987632 1223333333 33455666777777777777676555433222
Q ss_pred HHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006102 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLL 414 (661)
Q Consensus 356 R~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~ 414 (661)
..+.. .+.+.+.+ +..............++++..+........+.+.++
T Consensus 309 ~~~~~---------~~~~~~~~-~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 357 (415)
T COG0814 309 EGLAD---------LFKKSNSK-PGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLI 357 (415)
T ss_pred HhhhH---------HHHhccCc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 22222 22221111 222233334444555555555555555555555333
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.59 E-value=3.4e-12 Score=135.34 Aligned_cols=286 Identities=16% Similarity=0.182 Sum_probs=230.9
Q ss_pred ccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHH
Q 006102 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (661)
Q Consensus 50 ~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~g 129 (661)
+++.+|+..+.+..++|.|+...++..+... | ..+++.+++++..+..++.+..+.+++|+. +.+.+.++.+|+..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-G-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 4788999999999999999999999887654 7 889999999999999999999999999985 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006102 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (661)
Q Consensus 130 fi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i 209 (661)
.+.+..+.+.+....+...+..++.++..+- ...|.+. +...+++++......|.+..+|.+.+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--p~TP~~~--------------i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL--PETPIWV--------------IILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCCHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999998888877653 2233332 46677778888899999999998888
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHH
Q 006102 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (661)
Q Consensus 210 ~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s 289 (661)
...+.++.++++........+.+|.. +..+.|+..++.+.....+.|.|.|....+...+|||+ +..|....+
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~------P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLL------PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHee------CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Confidence 88888777776666555444433332 35566788899998899999999999999999999975 568999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHcCch----HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 006102 290 LSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH----WASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (661)
Q Consensus 290 ~~i~~v~Yil~~~~l~~~vp~~~~~-~~~~~~~a~~~~g~~----~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (661)
..+++++|.+..+...+..++++.. ..-|..+..+....+ ....++...-+.+.+......+++..+.+..+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877653 456777777766433 34456666666666777777777777766553
No 52
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.56 E-value=1.6e-11 Score=132.38 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=221.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHhchhHHHHHHHH
Q 006102 58 AIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRC-PSAGSAYHYSYICVGEGVAWLIGWA 135 (661)
Q Consensus 58 ~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~-P~~Gg~y~y~~~~~G~~~gfi~gw~ 135 (661)
....|..+|+|++.+|-.. ..+|.. .++..+++..++...++.++|..... |...+.-+-+++.+|+.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~--g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA--GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 4566778999999999764 346654 56667778888999999999999988 5556788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006102 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (661)
Q Consensus 136 ~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l 215 (661)
|.+.......++.....+.+++++.+.... +..+ ..+.++++++++..+...|.|...|++.++...++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~---------~~~~--r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGF---------APLN--RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---------CCcc--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 988888877888776666666543321100 0000 12357888899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCCC-C-CCCCCch-hHHHHHHHHHHHHHhhhhhHHhcchhh----hc------CcccCc
Q 006102 216 LAMLFVIIAGSYLGFKTGWSGYEL-P-TGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEE----VK------NPQRDL 282 (661)
Q Consensus 216 ~~ll~iii~g~~~~~~~~~~~~~~-~-~~~~p~g-~~gi~~~~~~~~faf~G~e~ia~~a~E----~k------nP~k~i 282 (661)
+.++++.+..+.+-+.++...... . ......+ ...++.+++..+++|.=.-.++.++.. .+ +.+|..
T Consensus 173 ~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~ 252 (443)
T PRK13629 173 ASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC 252 (443)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH
Confidence 999999998888776666542211 0 0000111 134788889999999888888888777 42 224778
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCC----CCCCH-HHHHHHHcCc---------hHHHHHHHHHHHHHHHHHHH
Q 006102 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEM----DPDTP-ISSAFASHGM---------HWASYVITIGAVTALCSTLM 348 (661)
Q Consensus 283 P~aii~s~~i~~v~Yil~~~~l~~~vp~~~~----~~~~~-~~~a~~~~g~---------~~~~~iv~i~~~~~~~~s~~ 348 (661)
.|++..+..+..++|++..++..+.+|.++. +.+.+ +....+..+. ++...+..+.+.+++.+|.+
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl 332 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF 332 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998875 23334 5555555544 66788888888888888888
Q ss_pred hhhchhhHHHHHHHhc
Q 006102 349 GSILPQPRILMAMARD 364 (661)
Q Consensus 349 ~~~~~~sR~l~ama~d 364 (661)
+-..+.--.+-.+.++
T Consensus 333 Gv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 333 GHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777777754
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.34 E-value=1.7e-09 Score=116.15 Aligned_cols=350 Identities=17% Similarity=0.201 Sum_probs=221.1
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CccHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-------AGSAYHYS 120 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~-------~Gg~y~y~ 120 (661)
++.++.++..+.++++.+|.|-...... |...+||+++..+.+++++.+.+.++=.-|+.+|.+ .||...|.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 4579999999999999999999887765 557799998887888999888888888888877753 28999999
Q ss_pred HHHhchhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHH
Q 006102 121 YICVGEGV-AWLIGWALILEYTIG-GSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (661)
Q Consensus 121 ~~~~G~~~-gfi~gw~~~l~~~~~-~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~ 198 (661)
++.+|.++ +.+.+......+... ....+...++.++..+ +.|.+ ..++++.+++.++..-
T Consensus 95 ~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f----~i~~~--------------~~gi~l~~l~~~vi~G 156 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAF----GIPPW--------------ITGIILAILVALVIFG 156 (416)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc----cccHH--------------HHHHHHHHHHHHHHHc
Confidence 99999653 433333333333322 2233333333332222 12322 2366777777888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC--CCCCCCCCc----hhHHH------HHHHHHHHHHh---h
Q 006102 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY--ELPTGYFPF----GVNGM------LAGSATVFFAF---I 263 (661)
Q Consensus 199 G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~--~~~~~~~p~----g~~gi------~~~~~~~~faf---~ 263 (661)
|+|..+++...+.-++.+..++..+.-+.....+-...+ .-.+.|.|. |..|. -.|+.=..|+- .
T Consensus 157 GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~ 236 (416)
T PF01235_consen 157 GIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGL 236 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCC
Confidence 999999999888888877665554443332111000000 000112221 22221 12333345555 6
Q ss_pred hhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC---CCCHHHHHHHHcCchHHHHHHHHHHH
Q 006102 264 GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---PDTPISSAFASHGMHWASYVITIGAV 340 (661)
Q Consensus 264 G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~---~~~~~~~a~~~~g~~~~~~iv~i~~~ 340 (661)
|....++.+.|+++|.|.-=.+++-..+-+.++..+..+++...-.+.... ...-...+++..-+++..+++.++.+
T Consensus 237 Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~ 316 (416)
T PF01235_consen 237 GSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALF 316 (416)
T ss_pred ChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 778888888999999887666776666656666666655555443333222 12234567887767899999999999
Q ss_pred HHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 006102 341 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420 (661)
Q Consensus 341 ~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~ 420 (661)
+..+++++++.+..-+.+.-+-.+ ++...+++.+.+ +...+..+.+.+.+.++..+...+.-....
T Consensus 317 lFafTTilg~~~yge~~~~yl~~~-----------~~~~~~~ri~~i---~~~~~G~~~~~~~vW~~~Di~~~lmai~Nl 382 (416)
T PF01235_consen 317 LFAFTTILGWYYYGEKCAEYLFGG-----------KKAIWIYRILFI---AMVFIGAVIDLDLVWDLADIANGLMAIPNL 382 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-----------ceEEEeeeehhh---hhhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999888887665411 121224443332 223334445667777777777666666666
Q ss_pred HHHHHhhccC
Q 006102 421 ISVLILRYVP 430 (661)
Q Consensus 421 ~~~i~lR~~~ 430 (661)
++++.+++.-
T Consensus 383 ial~lL~~~v 392 (416)
T PF01235_consen 383 IALLLLSKEV 392 (416)
T ss_pred HHHHHhHHHH
Confidence 7777777643
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.31 E-value=6.1e-09 Score=110.68 Aligned_cols=350 Identities=17% Similarity=0.237 Sum_probs=228.3
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CccHHHH
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-------AGSAYHY 119 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~-------~Gg~y~y 119 (661)
-++.++.++..+.++++.+|+|-...... |...+||+++..+.+.+++.+.+.+.=+-|+..|.+ .||...|
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 35679999999999999999999887665 557799997777777888888888888888888862 2899999
Q ss_pred HHHHhch-hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 006102 120 SYICVGE-GVAWLIGWALILEYT-IGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (661)
Q Consensus 120 ~~~~~G~-~~gfi~gw~~~l~~~-~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~ 197 (661)
.++.+|. ..|.+.+...++.+. +.....+.+.++.++..++ .|.+. .++++.++...+..
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~----~~~~~--------------~gi~la~l~~~VI~ 199 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG----IPPLV--------------TGIVLALLVALVIF 199 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC----CcHHH--------------HHHHHHHHHHHHHH
Confidence 9999984 456666666666665 4666666666666665543 34332 47788888889999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cccCCCCCCCCCCCCCch-hHHHHHHHHHHHHHh---
Q 006102 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLG-----------FKTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF--- 262 (661)
Q Consensus 198 ~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~-----------~~~~~~~~~~~~~~~p~g-~~gi~~~~~~~~faf--- 262 (661)
-|+|..+++......++-+..++..+.-+... ..+.+.....-+++.-.. ...+..|+.=..|+-
T Consensus 200 GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAG 279 (452)
T COG1115 200 GGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAG 279 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccccc
Confidence 99999999888777776555444333322211 111121111011111000 113444555556665
Q ss_pred hhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCCHH-HHHHHHcCchHHHHHHHHHH
Q 006102 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPI-SSAFASHGMHWASYVITIGA 339 (661)
Q Consensus 263 ~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~--~~~~~-~~a~~~~g~~~~~~iv~i~~ 339 (661)
.|....++.+.++++|.|.-=..++...+-+.++.....+++...-.|+..+ ....+ ..++++.-++|...++.++.
T Consensus 280 mGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l 359 (452)
T COG1115 280 MGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIAL 359 (452)
T ss_pred CCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHH
Confidence 5777778888899999886555555555545555555555555544443332 23333 45788888889999999999
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 006102 340 VTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMV 419 (661)
Q Consensus 340 ~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v 419 (661)
.+..+++++++.+..-|.+.-+..++ .-..+.+.+. +....+....+.+..-++..+..-+.-+.-
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~~~k-----------~~~~~~r~~~---l~~v~~Ga~~~l~~vW~laD~~~glMai~N 425 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLFGSK-----------KAILLYRLIV---LAMVFLGAVLSLDLVWNLADLFMGLMAIPN 425 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc-----------hHHHHHHHHH---HHHHHHhccccHHHHHHHHHHhchHHHHHH
Confidence 99999999999998888877664322 1011222222 222223344566666666666655555556
Q ss_pred HHHHHHhhcc
Q 006102 420 AISVLILRYV 429 (661)
Q Consensus 420 ~~~~i~lR~~ 429 (661)
.++++.+|+.
T Consensus 426 LIal~lL~~v 435 (452)
T COG1115 426 LIALLLLSKV 435 (452)
T ss_pred HHHHHHHhHH
Confidence 6677777764
No 55
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.19 E-value=5.1e-08 Score=105.50 Aligned_cols=345 Identities=15% Similarity=0.177 Sum_probs=204.3
Q ss_pred cccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CccHHHHHH
Q 006102 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-------AGSAYHYSY 121 (661)
Q Consensus 49 r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~-------~Gg~y~y~~ 121 (661)
++++.++..+..+++++|.|-...... +...+||+++....+++++...+.+.-.-++.++.+ .||...|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~-Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVAT-AIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 459999999999999999994443333 346789987666667777777777666666666652 146668888
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHh
Q 006102 122 ICVG-EGVAWLIGWALILEY-TIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (661)
Q Consensus 122 ~~~G-~~~gfi~gw~~~l~~-~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G 199 (661)
+.++ |..|.+.+.. .+.| .......++..++.++..+ +.|.+. .++++.++...+..-|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~----~~~~~v--------------~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF----NVPKLV--------------TGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc----CCcHHH--------------HHHHHHHHHHHHHhcC
Confidence 8876 5666666655 4444 3344555555555554322 123322 3555556666666669
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC---CCCCCCCc----hhHH------HHHHHHHHHHHh---h
Q 006102 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE---LPTGYFPF----GVNG------MLAGSATVFFAF---I 263 (661)
Q Consensus 200 ~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~---~~~~~~p~----g~~g------i~~~~~~~~faf---~ 263 (661)
+|..+++...+..++.+..++..+..... +.+|..+.. -.+.|.|. |..| +-.|+.=..|+- .
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~-n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIIIM-NIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 99999999998888877765443322221 111110000 00122222 2222 222444455655 5
Q ss_pred hhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCC-C-CCCH-HHHHHHHcCchHHHHHHHHHHH
Q 006102 264 GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-D-PDTP-ISSAFASHGMHWASYVITIGAV 340 (661)
Q Consensus 264 G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~-~-~~~~-~~~a~~~~g~~~~~~iv~i~~~ 340 (661)
|....++.+.|+++|.|.-=.+++...+-+.++..+..+++...--|++. + +... ...+|+..-++|..+++.+..+
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777888899999988655555555554455555555444433223311 1 1123 3356777666788999999999
Q ss_pred HHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 006102 341 TALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420 (661)
Q Consensus 341 ~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~ 420 (661)
+..+++++++.+..-+.+.-+-.++. ..+++.+.+ +...+..+.+++.+.++..+...+.-....
T Consensus 344 lFaftTii~~~yyge~~~~yl~~~~~------------~~~~r~~~~---~~~~~g~~~~~~~vw~~~D~~~~lm~i~Nl 408 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFLKGNKK------------VKLYRLVFL---AAVFVGAFLSLDLVWNLADLSMGLMAIPNL 408 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc------------cceeeehhh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887766532220 122332222 222233345566666666665555555555
Q ss_pred HHHHHhhcc
Q 006102 421 ISVLILRYV 429 (661)
Q Consensus 421 ~~~i~lR~~ 429 (661)
++++.+++.
T Consensus 409 ial~~L~~~ 417 (425)
T TIGR00835 409 IAILLLRKV 417 (425)
T ss_pred HHHHHHHHH
Confidence 666666653
No 56
>PTZ00206 amino acid transporter; Provisional
Probab=99.16 E-value=1.6e-07 Score=104.73 Aligned_cols=251 Identities=14% Similarity=0.167 Sum_probs=154.7
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHH
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gf 130 (661)
|.....+-.+.+++|+|+..++... ..+|-. .++..++.++++..+...+.+.+.+ ++.-+...-++.++|+...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af--~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA--NSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 4466677777889999999998753 446754 5555666677777777777776665 33346666677789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006102 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (661)
Q Consensus 131 i~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~ 210 (661)
++....++.....+.++....++.+...+.+.. .+.++.... +..... ....+++.+-+...+.++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-~~~~~~~~~--~~r~~~--~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTN-APDFLKQKS--GNRLLT--SLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhhhcc--CcEEee--eehhhhHhhhcccccchHHHHHHHHHH
Confidence 999999888888888888888888877765321 122221100 000000 111122223333455666666665554
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCCC----CCCCCCCch-hHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc-cCcch
Q 006102 211 TTANVLAMLFVIIAGSYLGFKTGWSGYE----LPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPL 284 (661)
Q Consensus 211 ~~~~l~~ll~iii~g~~~~~~~~~~~~~----~~~~~~p~g-~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~-k~iP~ 284 (661)
....+...+.+++.........+.+... +..+...++ ....+.++++..|+|.+...+...-+|+|||+ |++.+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~ 292 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL 292 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH
Confidence 4333322222222222211111111000 001111111 23578889999999999999999999999974 78889
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcccC
Q 006102 285 GIGTALSICCALYMLVSIVIVGLVPY 310 (661)
Q Consensus 285 aii~s~~i~~v~Yil~~~~l~~~vp~ 310 (661)
.+..++.++.++|.++.+.-....+.
T Consensus 293 v~~~s~~i~~~lY~~~G~~GYl~fG~ 318 (467)
T PTZ00206 293 ASTIAMGMCFTMYVLTAFFGYMDFGR 318 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999988776665543
No 57
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.16 E-value=3.8e-08 Score=107.21 Aligned_cols=281 Identities=16% Similarity=0.084 Sum_probs=184.7
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-----HHHHH
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGS-----AYHYS 120 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg-----~y~y~ 120 (661)
.+|+-++++..+.+++.++|.|+..++-.. ...|.. .++..++.+++...++....+.-...|.-.| .-.-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~--~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYAL--AQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 467899999999999999999999998543 446765 3777788888888888888888777777666 66677
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHH-HHh
Q 006102 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL-CVG 199 (661)
Q Consensus 121 ~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~-~~G 199 (661)
+++||++.-.++++.+.+.....+..+....++.+..++......-. ... ...+ .+++-+++.... ...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~~f----~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQYF----IIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ceeh----hhhHHHHHHHHHHCCC
Confidence 88999877778888888877777777777777777777653210000 000 1111 222222222222 333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHH-HHHHHHHHHHhhhhhHHhcchhhhcCc
Q 006102 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM-LAGSATVFFAFIGFDAVASTAEEVKNP 278 (661)
Q Consensus 200 ~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi-~~~~~~~~faf~G~e~ia~~a~E~knP 278 (661)
.+...++.....+..+......++.+.......+.. . .+....+..+. +.++....|+|.|.-...+.-..+|+|
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~-~---~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p 257 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAP-S---GGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP 257 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCc-c---cCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCc
Confidence 344555555555555555555555555543211111 0 01111111111 778889999999999999999999999
Q ss_pred ccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHhh
Q 006102 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGS 350 (661)
Q Consensus 279 ~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~-g~~~~~~iv~i~~~~~~~~s~~~~ 350 (661)
+| ++|+.+.+..+++.+|+.+++.-..+.+.+.. .+..... ...|.....++.+.+-.+++.-..
T Consensus 258 ~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~------~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 258 PK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP------DNILLSLQPPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc------hhhhhcccCchhHHHHHHHHHHHHHhhhhhhh
Confidence 88 99999999999999999999887766554322 1222333 356777777777776666655443
No 58
>PLN03074 auxin influx permease; Provisional
Probab=99.04 E-value=8e-07 Score=98.89 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=128.2
Q ss_pred cCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHH----HHHHHhccCCCCccHH-----HH-
Q 006102 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAF----CYAELASRCPSAGSAY-----HY- 119 (661)
Q Consensus 51 L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al----~~aElas~~P~~Gg~y-----~y- 119 (661)
.+..|...-.+.+.+|.|+..+|... ..+|.. .++..++.++++.-++. ++-|...+.|+.+-.| .|
T Consensus 46 ~s~~~~~~~l~~~~vG~GILaLP~Af--~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 46 GSVYDAWFSCASNQVAQVLLTLPYSF--SQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred chHHHHHHHHHHHHHhHHHHhHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 45555555588889999999999753 456754 55556666666555555 4556777777644222 23
Q ss_pred --HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 006102 120 --SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (661)
Q Consensus 120 --~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~ 197 (661)
+.+.+|+.++.+......+.....+.......++.+..+ +. . .+...+.-+++++.+. ....
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-~~-----------~-~~~~~~~~i~~~v~~~---~~~i 187 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-ND-----------N-LDKRTWTYIFGACCAT---TVFI 187 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-CC-----------C-cCCCeEEeehHHHHHH---HHHc
Confidence 334678887776654444333332222222222111111 10 0 0111111112222222 1223
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcC
Q 006102 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (661)
Q Consensus 198 ~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~kn 277 (661)
...|..+++..+.....+.....+++..........++ . + .+.++..++.++..++|+|.|.-....+-.|+||
T Consensus 188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~---~-~--~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~ 261 (473)
T PLN03074 188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVK---H-S--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK 261 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---C-C--CchhHHHHHHHHHHHHHHhcccccHHHHHHhccC
Confidence 44555555554444433333223333333322222221 0 1 2335666777888899999999999999999999
Q ss_pred cccCcchHhHHHHHHHHHHHHHHHHHHHhccc
Q 006102 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVP 309 (661)
Q Consensus 278 P~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp 309 (661)
|+ ++++....+...+..+|+..++......+
T Consensus 262 P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG 292 (473)
T PLN03074 262 PQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFG 292 (473)
T ss_pred hh-cccchHHHHHHHHHHHHHHHHHeeeeeec
Confidence 95 58988888888888888877655444433
No 59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.90 E-value=2.8e-06 Score=91.64 Aligned_cols=349 Identities=16% Similarity=0.139 Sum_probs=199.2
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH--HHHHHHHHHHH---HHHHHHHHHHHhccCCCC---------
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA--LALSFLIAGIA---SAFSAFCYAELASRCPSA--------- 113 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~--~il~~ll~~l~---~l~~al~~aElas~~P~~--------- 113 (661)
++..+..+...--+-+++|+|++.++.. ...+|-. .+...+++.+. .....-|--++.++.-++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A--Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA--FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH--HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 3457888888888888999999998864 4567753 33334444432 223455666777775221
Q ss_pred ---ccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHH
Q 006102 114 ---GSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVL 190 (661)
Q Consensus 114 ---Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~ 190 (661)
.+.|.| -|.+|+...+++-..+.+.+.-.+.++....++-+..+.+.... ...+....+.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~--------------~~~s~~~~i~~~ 186 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP--------------GVLSVRLYILIQ 186 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC--------------CCccHHHHHHHH
Confidence 122224 66677777788777777777776666666666666666541110 011111223333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhc
Q 006102 191 IVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAS 270 (661)
Q Consensus 191 ~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~ 270 (661)
+...+...-+|..+++.-+..+.++..++.+.+...+.... ..+.++-..+. ++.++-..+.+++|||-|.-.+-.
T Consensus 187 ~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~--~~~~~~~~~~~--~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 187 LPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQD--LPPTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhc--cCCcccccccc--chhhhHHHHHHHHHHhccceEEEe
Confidence 33344444566667776666667766666555554432211 11211112221 367777888899999999999999
Q ss_pred chhhhcCcccCcc---hHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 006102 271 TAEEVKNPQRDLP---LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (661)
Q Consensus 271 ~a~E~knP~k~iP---~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~ 347 (661)
+=+++|+|+ ++| ..+-.++.+++++|+...+.-....+.+.-+. +--+....|+...+.+...++++-+-
T Consensus 263 lEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHHHHHHcC
Confidence 999999995 577 99999999999999988776555544432211 01123335555666666666655554
Q ss_pred HhhhchhhHHHHHHHhcCCCcccccccccc--ccCcchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 348 MGSILPQPRILMAMARDGLLPPFFSDVNKT--TQVPVKSTIVTGIVAAALA-FFMDVSALAGMVSVGTLLAFTMVAISVL 424 (661)
Q Consensus 348 ~~~~~~~sR~l~ama~dg~lP~~f~~~~~~--~~~P~~a~l~~~ii~~l~~-~~~~~~~L~~l~s~~~l~~y~~v~~~~i 424 (661)
--.++..-+++..- +.+.+++ +++ ...-.+..++. ++..++ ++.+++.++++++......-.++.-+++
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVl--lt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~li 407 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVL--LTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLI 407 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHH--HHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence 44444555554432 3333331 111 00111112221 122222 2557888888877666555555555555
Q ss_pred HhhccCCC
Q 006102 425 ILRYVPPD 432 (661)
Q Consensus 425 ~lR~~~~~ 432 (661)
-+....++
T Consensus 408 el~~~~~~ 415 (449)
T KOG1304|consen 408 ELITFYPE 415 (449)
T ss_pred HHHHhccc
Confidence 55544443
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.87 E-value=2.9e-06 Score=86.96 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=168.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHH
Q 006102 58 AIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGW 134 (661)
Q Consensus 58 ~l~ig~~iG~Gif~~~g~ia~~~aGp---~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw 134 (661)
+.-+|.++|+|. .+|+-.-+..|+ ..+++.++++++....+....++++++.. ...-.+.+..+||.++-+.--
T Consensus 10 f~~ig~~vGAGf--AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGF--ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhcccc--cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence 345667889884 344434455554 48999999999999999999999988865 567889999999999877665
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Q 006102 135 ALILEYTIGGSAVARGIS-PNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG-IKESTIAQAIVTT 212 (661)
Q Consensus 135 ~~~l~~~~~~aa~a~~~~-~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G-~k~~~~~~~i~~~ 212 (661)
...+. +++.+.+..+.+ +.+...++ .|.|.. +++++.+..+...++ ++..-++|.+.+.
T Consensus 87 ~iif~-lf~~~vVM~AGags~~~e~~~----lP~wiG--------------ali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 87 IIIFF-LFSTAVVMLAGAGSLLEEMFG----LPYWIG--------------ALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHH-HHHHHHHHhccchhHHHHHhC----ccHHHH--------------HHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 54443 334444444333 35555554 677653 466667777777777 8877788877777
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHH
Q 006102 213 ANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSI 292 (661)
Q Consensus 213 ~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i 292 (661)
+.++.+.++...-.+....+.++. +. .-.+ +|.....+ ..++=-...+.....+++|+|+ +|+.-+|-+.+-++
T Consensus 148 ~LIi~l~~v~~~~~f~~~~~~a~~--~~-~~~~-~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~-~~~~~~g~l~gglI 221 (349)
T COG3949 148 FLIIILVLVTLSFQFTNLGNAAQI--VL-TKQG-NWKASAVG-YGALNILVAVAVLVPLGGRMES-RKVSGIGGLIGGLI 221 (349)
T ss_pred HHHHHHHHHHHHHHHhhccchhhh--cC-CcCC-ChHHHHHh-hhhHHHHhHhHhhhhhcccccc-cchhhhhhhhhhHH
Confidence 766664333222222111111110 00 0111 22221111 1111222344556778899999 47788888888888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhch
Q 006102 293 CCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (661)
Q Consensus 293 ~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (661)
.+++..+....+....| +-.+.+-|..+..++.. +....++.+...+.+.++..+.+++
T Consensus 222 lgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 222 LGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877765 33355678888888876 5566677777777777777776644
No 61
>PRK11375 allantoin permease; Provisional
Probab=98.72 E-value=9.5e-05 Score=82.79 Aligned_cols=328 Identities=16% Similarity=0.083 Sum_probs=162.4
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp---~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
-+|+-+++|...+=++..+..+.+...+.... .|- .++++.+++.++........+..+.++-. +.....+..
T Consensus 23 ~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~s 98 (484)
T PRK11375 23 SQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRAS 98 (484)
T ss_pred cccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHH
Confidence 45778999998888877776666533333221 233 35555555554444444444444443332 577788899
Q ss_pred hchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----ccCCChhhHhhhccCCCCccchhHH-HHHHHHHHHHHHH
Q 006102 124 VGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLF----GSADSLPFFMARQQIPGLGIIVDPC-AAILVLIVTGLLC 197 (661)
Q Consensus 124 ~G~~~gfi~gw~~~-l~~~~~~aa~a~~~~~~l~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~-a~~ii~~~~~i~~ 197 (661)
||..-+.+.+.... +..+...+......++.+..++ ++..+.+..+. ..+.+ ..+.+ .+++.++.+.+..
T Consensus 99 FG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~---~~g~~-~~~~i~~~i~~~l~~~~~~ 174 (484)
T PRK11375 99 YGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT---LLGLS-LPGLITFLIFWLVNVGIGF 174 (484)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc---cCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 99876555555542 3333333444444444444333 22111111110 00111 11122 2344455666677
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC--CCCCCC--chhHHHHHHHHHHHHHhh-hhhHHhcch
Q 006102 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFP--FGVNGMLAGSATVFFAFI-GFDAVASTA 272 (661)
Q Consensus 198 ~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~--~~~~~p--~g~~gi~~~~~~~~faf~-G~e~ia~~a 272 (661)
.|.|...+++.+...+.++..+.+.+..+.... +.+..+ +.+..+ .....+..++..++-++. +.-..+..+
T Consensus 175 ~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~t 251 (484)
T PRK11375 175 GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG---IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFT 251 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchh
Confidence 899999999998888887766665555444332 221110 000000 112234444433333333 444567778
Q ss_pred hhhcCcccCcchHhHHHHHHHHHHHHHHHHH-HHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH-hh
Q 006102 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIV-IVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLM-GS 350 (661)
Q Consensus 273 ~E~knP~k~iP~aii~s~~i~~v~Yil~~~~-l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~-~~ 350 (661)
...|++ |+.-++...++.+...+...+.+. ..+..........+|.. +..+.+...+..+..+..+++..++.. ..
T Consensus 252 Ry~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~-i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N 329 (484)
T PRK11375 252 QNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD-IVQRWDSLFASFFAVLVILMTTISTNATGN 329 (484)
T ss_pred cccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 888886 444456665655555443322222 22222111112244433 334434444555555666666666643 45
Q ss_pred hchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcC
Q 006102 351 ILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD 400 (661)
Q Consensus 351 ~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~ 400 (661)
+++.+-- -.+++||+. |+| ++.++.++++.++.....
T Consensus 330 ~ys~~~~-----l~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~~ 366 (484)
T PRK11375 330 IIPAGYQ-----IAALAPTKL---TYK-----NGVLIASIISLLICPWKL 366 (484)
T ss_pred cccHHHH-----HHHhCcCcc---chh-----hHHHHHHHHHHHhccHHH
Confidence 5444333 345778654 333 356667666666554433
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.66 E-value=7.8e-09 Score=113.33 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=195.3
Q ss_pred cccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCC---CCccHHHHHHHHh
Q 006102 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP---SAGSAYHYSYICV 124 (661)
Q Consensus 49 r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P---~~Gg~y~y~~~~~ 124 (661)
|+-++++..+.-+++++|+|++.+|-... .+|.. .++..++.++++..+...+.|.....| +.-....-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~--~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA--QSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 45688999999999999999999997643 46754 566677788888888999999988876 3333344457789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~ 204 (661)
|+..++++.....+........+....++.+..+....... . ....... .++..++...+. -.|..+
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~------~--~~~~~~~---~~i~~~i~~pls--~~~~l~ 145 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD------L--FISRYVW---IIIFALIVLPLS--FLKNLK 145 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc------c--ccccccc---cccccccccccc--ccchhh
Confidence 99998888888777666555554444444444443321100 0 0000110 111111111111 123333
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCccc--
Q 006102 205 IAQAIVTTANVLAMLF--VIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR-- 280 (661)
Q Consensus 205 ~~~~i~~~~~l~~ll~--iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k-- 280 (661)
.+........+..+.. +.+............+...+....+..+.++..+++...|+|.+...+....+|+|+|+|
T Consensus 146 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~ 225 (409)
T PF01490_consen 146 SLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFK 225 (409)
T ss_pred HHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccc
Confidence 3332222222222211 111111111111111111111122345678999999999999999999999999999865
Q ss_pred CcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCch-HHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 006102 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVITIGAVTALCSTLMGSILPQPRILM 359 (661)
Q Consensus 281 ~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~-~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (661)
++.++...+..++.++|.+..+.-....+.+. ++ ++..+.... +...+..+...+..+.+.-...+...+.+.
T Consensus 226 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~---~~---~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~ 299 (409)
T PF01490_consen 226 KMKKVLSISMIICFIIYLLFGIFGYLAFGDSV---QG---NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLE 299 (409)
T ss_pred ccceeeeehhhhhhHHhhhhhhcccceeeeee---cc---hhhhcCCCcccccccccccchhhhhhccccccchhHhhhh
Confidence 45699999999999999998887665554321 11 233333322 455556656555555554444555555555
Q ss_pred HHHhcC-----CCccccccccccccCcchHHHHHHHHHHHH-HHhcCHHHHHHHHHHH--HHHHHHHHHHHHHHhhccCC
Q 006102 360 AMARDG-----LLPPFFSDVNKTTQVPVKSTIVTGIVAAAL-AFFMDVSALAGMVSVG--TLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 360 ama~dg-----~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~-~~~~~~~~L~~l~s~~--~l~~y~~v~~~~i~lR~~~~ 431 (661)
..-+.. .-++.- +.++..+.-.+ + ...+++.++ ....+++.+.++.+.. ..++|.+-++-.++.+++++
T Consensus 300 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 300 NLLFKRAASSRDSPKNT-PSSRWLRYLIR-I-ILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred hheeccccccccccccc-cccceeeeeee-c-chhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 443321 111000 00000011111 1 112222222 2334677777776543 35677777776676666553
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.47 E-value=0.0044 Score=69.73 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=150.5
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHH--HHH-HHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL--IAG-IASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~l--l~~-l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
.|+++++-..+-.+++.++++-+......++.. |-+ .+.++. ..+ +.....+.-+.++.++. +.=....|.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 578998877777777777776666554445443 433 222211 111 11112333445555554 335788899999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 124 ~G~~-~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
+|+. ...+.+....+..+...+....+.+..++.+++ +|.... ..+..++++.....-|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----ISYETG-------------LLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhccHHH
Confidence 9854 566777666666666667777777777777664 222211 0112222344455567887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc-----ccCCCCCCCCCCCCCc------hhHHHHHHHHHHHHHhhhhhHHhcc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGF-----KTGWSGYELPTGYFPF------GVNGMLAGSATVFFAFIGFDAVAST 271 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~-----~~~~~~~~~~~~~~p~------g~~gi~~~~~~~~faf~G~e~ia~~ 271 (661)
..+.+.+-..+.++..+++.+..+.... .++... .+++-+.|. ++..+........+...+.....+-
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR 259 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQA-IDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVR 259 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHh-cCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777766666665554444333222110 000000 000000111 1111111111112222333332233
Q ss_pred hhhhcCcccCcchHhHHHHHHHHHHHHHHHHHH---HhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 006102 272 AEEVKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLM 348 (661)
Q Consensus 272 a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l---~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~ 348 (661)
.=..||+ |+..|+..++.+....+++...+.- ....|. ..+++..+.....+...+|+.-++..+++.+..++..
T Consensus 260 ~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~ 337 (483)
T PRK09442 260 CMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVD 337 (483)
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3336664 6677888877766665554433321 112332 2234556666777777888888888888888888887
Q ss_pred hhhchhhHH
Q 006102 349 GSILPQPRI 357 (661)
Q Consensus 349 ~~~~~~sR~ 357 (661)
+.+.+.+-+
T Consensus 338 s~l~~~ss~ 346 (483)
T PRK09442 338 SQLLQSSST 346 (483)
T ss_pred HHHHHHHHH
Confidence 777665543
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.42 E-value=0.0015 Score=71.85 Aligned_cols=289 Identities=12% Similarity=0.010 Sum_probs=159.0
Q ss_pred cccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch-h
Q 006102 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE-G 127 (661)
Q Consensus 49 r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~-~ 127 (661)
|+++++-..+--+++.++++.+......++.+ |...++..+...+..+..+..+++.-.+.+ .-..+.|.++-+|+ .
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCchH
Confidence 77889888877778888887777666555543 533332222233344556666777655544 45789999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006102 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (661)
Q Consensus 128 ~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~ 207 (661)
...+.+....+..+...+....+.+..++.+++ .|.+.. ..+..+++......-|.|...+.+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i~~~~~-------------~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG----LDLYLS-------------LLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chHHHH-------------HHHHHHHHHHHHHHcchHHHHHHH
Confidence 667777877777777888888888888877764 232221 112222233445556788777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc--------ccCCCCC-----CC-CCCCCC----chhHHHHHHHHHHHHHhhhhhH-H
Q 006102 208 AIVTTANVLAMLFVIIAGSYLGF--------KTGWSGY-----EL-PTGYFP----FGVNGMLAGSATVFFAFIGFDA-V 268 (661)
Q Consensus 208 ~i~~~~~l~~ll~iii~g~~~~~--------~~~~~~~-----~~-~~~~~p----~g~~gi~~~~~~~~faf~G~e~-i 268 (661)
.+-.++.++..+++.+..+.+.. ..+..+. .. .....+ ..+.-...+.......+ +.+- .
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 222 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY-WTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH-hcCHHH
Confidence 66666665544433333322110 0000000 00 000011 01100011111111111 1110 1
Q ss_pred hcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHH---hcc----cCCC----CCCCCHHHHHHHHcCchHHHHHHHH
Q 006102 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV---GLV----PYYE----MDPDTPISSAFASHGMHWASYVITI 337 (661)
Q Consensus 269 a~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~---~~v----p~~~----~~~~~~~~~a~~~~g~~~~~~iv~i 337 (661)
.+-.=-.|| +|+..|+...+.+...+++++..+.-. ... |..+ .+++..+....++...+++.-++.+
T Consensus 223 ~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 122223355 367778888877666665543332211 112 2111 2445566777777778888889999
Q ss_pred HHHHHHHHHHHhhhchhhHHH
Q 006102 338 GAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sR~l 358 (661)
+++.+..++..+.+.+.+-.+
T Consensus 302 gilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 988888888888877776654
No 65
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.42 E-value=0.0026 Score=70.68 Aligned_cols=248 Identities=11% Similarity=-0.030 Sum_probs=125.7
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSG-PALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aG-p~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G 125 (661)
-+|+-++++...+=++..+...-+..-+......-+ ..++++.+++.++........+..+.++-. ......+..||
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~FG 87 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRASFG 87 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhhhh
Confidence 346679999988888877776666655443311012 236666666665555545455555555443 46778889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHH--HHHHhhHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG--LLCVGIKES 203 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~--i~~~G~k~~ 203 (661)
..-+.+.+...++..+...+......++.++.+++... +... +.+......+..+++++..+.. ....|.|..
T Consensus 88 ~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~--~~~~---~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~ 162 (442)
T TIGR00800 88 IYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIF--PGYL---HLGNGMTTLELICFIIFWALVLVFLFFFGYKIR 162 (442)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cccc---ccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 98888888887777777777777766666655543210 1000 0000000011223333333222 334555655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc-ccCCCCCCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHHhcchhhhcCcccC
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPFGVNGMLAGSATVFFA-FIGFDAVASTAEEVKNPQRD 281 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~-~~~~~~~~~~~~~~p~g~~gi~~~~~~~~fa-f~G~e~ia~~a~E~knP~k~ 281 (661)
.+.+.......++.+++.+.. ..... ..+..... +....+.+...++.++..++-. ..+.-.++.++...|++ |+
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~~~~~~-~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~ 239 (442)
T TIGR00800 163 HLFEWLAVVPPFAAFGMLIWA-LSKAHGKGPLGELT-GTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KT 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcCCCCccccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cc
Confidence 555555554444444333322 22211 11110000 0001122344455555443322 24444667888888875 44
Q ss_pred cchHhHHHHHHHHHHHHHHHHHH
Q 006102 282 LPLGIGTALSICCALYMLVSIVI 304 (661)
Q Consensus 282 iP~aii~s~~i~~v~Yil~~~~l 304 (661)
-.++...+.....+...++.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~ 262 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFFGILG 262 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566656555555444444333
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.40 E-value=0.0075 Score=67.63 Aligned_cols=287 Identities=15% Similarity=0.094 Sum_probs=151.1
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHH---HHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~l---l~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~ 123 (661)
.|+++++-..+--+++.+|++-+......++. .|.. ..+.+. .+.+.....+.-+.++.++. +.-..+.|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 47899998888888888888777655444444 3433 111111 11111111222334444443 335789999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 006102 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (661)
Q Consensus 124 ~G~~-~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~ 202 (661)
+|+. ...+.+....+..+...++...+.+..++.+++ .|.+.. +.+..++++.....-|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----LSYLTA-------------LFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHH
Confidence 9954 456666665555555555666666666666654 232221 1112222344555678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC------CCCCCCCCCc---hh--HHHHHHH-HHHHHHhhhhhHHhc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG------YELPTGYFPF---GV--NGMLAGS-ATVFFAFIGFDAVAS 270 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~------~~~~~~~~p~---g~--~gi~~~~-~~~~faf~G~e~ia~ 270 (661)
..+.+.+-..+.++..+++.+..+... .++.. ..+++.+.|. ++ ..+.... ....+...+.....+
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~--gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~ 257 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAG--GGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAV 257 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHH
Confidence 888777777666665554444333221 11100 0001111111 10 0111111 111222233333333
Q ss_pred chhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 006102 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGL---VPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (661)
Q Consensus 271 ~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~---vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~ 347 (661)
-.-..||+ |+..|+..++.++...++....+.-... .| +..+++..+.....+...+++.-++..+++.+..++.
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~ 335 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIP-DLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTV 335 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 45556764 7788888888766655554443322111 22 2123455666666666778888888888888888888
Q ss_pred HhhhchhhHH
Q 006102 348 MGSILPQPRI 357 (661)
Q Consensus 348 ~~~~~~~sR~ 357 (661)
.+.+.+.+-.
T Consensus 336 ~s~l~~~ss~ 345 (471)
T TIGR02119 336 NSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHH
Confidence 8877766655
No 67
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.30 E-value=0.00078 Score=72.60 Aligned_cols=295 Identities=16% Similarity=0.146 Sum_probs=153.1
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCccHHHHHHHHhchhHH
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELAS--RCPSAGSAYHYSYICVGEGVA 129 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas--~~P~~Gg~y~y~~~~~G~~~g 129 (661)
+....++-.+|+.+|.|..-.-+..+.+++|.+-++-|++..+ .+-.-+..+|++- +... +..-.|-+..-++.+
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l-~~GiPlli~Ef~iGr~~~~-~~~~a~~~l~~~~~~- 86 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLL-LVGIPLLLAEFAIGRRGRK-NAVGAFRKLAPKKKW- 86 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHH-HHhHHHHHHHHHhhhhcCC-ChhHHHHHhccCccc-
Confidence 4567778889999999998888888888888775555554332 2233344555542 2222 222222222112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHccCCChhhHhhh--ccCCCCccchhHHHHHHHHHHHHHHHHhhHH-
Q 006102 130 WLIGWALILEYTIGGSAVARGISPNLA----MLFGSADSLPFFMAR--QQIPGLGIIVDPCAAILVLIVTGLLCVGIKE- 202 (661)
Q Consensus 130 fi~gw~~~l~~~~~~aa~a~~~~~~l~----~~~~~~~~~p~~~~~--~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~- 202 (661)
-..||.-.+......+.++.-.+-.+. +..+..........+ .+....++.....-.+.+++...+..+|++.
T Consensus 87 ~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~G 166 (439)
T COG0733 87 EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKG 166 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 334444333333333333322222222 222221100111100 0011112222233456666777888899987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHh-hhhhHHhcchhhhcCcc
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK-TGWSGYELPTGYFPF-GVNGMLAGSATVFFAF-IGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~-~~~~~~~~~~~~~p~-g~~gi~~~~~~~~faf-~G~e~ia~~a~E~knP~ 279 (661)
..|.+.++..+.++.++++.+-.+..... ++.+-...+ ++... +...++.++..+||+. .|+-..-+++.-.++ +
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~P-D~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKP-DFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcC-CHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 78899988888877777666655543211 000000000 01111 1455778888889887 699999999998886 7
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-------CHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHhhh
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFASHGM-HWASYVITIGAVTALCSTLMGSI 351 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~-------~~~~~a~~~~g~-~~~~~iv~i~~~~~~~~s~~~~~ 351 (661)
.|+++.-......-+.+-++..+++.-..-....+++ ..++++|.+.+. .....+.-...+++.++|.++.+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888777776666655555444322211111111 246778888762 22333333444444444444433
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.27 E-value=0.003 Score=68.86 Aligned_cols=238 Identities=12% Similarity=0.032 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 006102 85 LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164 (661)
Q Consensus 85 ~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~ 164 (661)
.+++.+++-++-.....+.++++.+...+ ...-.+..||..-+++.....++.++-..+......+.. ......
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a----~~~~~~ 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA----IGSGTG 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc----cccCCC
Confidence 56666666666666666677777666553 555567778988887777777766654444433332222 111112
Q ss_pred hhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCC
Q 006102 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF 244 (661)
Q Consensus 165 ~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~ 244 (661)
.|.+ ...+++..+.++...+|.|...+++++.....++..+..+...+-.... .+.... ..
T Consensus 128 ~~~~--------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~--~~~~~~---~~ 188 (442)
T COG1457 128 LPVW--------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGG--LDALWV---KG 188 (442)
T ss_pred CcHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cceeec---cC
Confidence 2222 1245555678888899999999999999999888877666655431111 111111 12
Q ss_pred CchhHHHHHHHHHHHHHhhhhh-HHhcchhhhcCcc--cCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHH
Q 006102 245 PFGVNGMLAGSATVFFAFIGFD-AVASTAEEVKNPQ--RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS 321 (661)
Q Consensus 245 p~g~~gi~~~~~~~~faf~G~e-~ia~~a~E~knP~--k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~ 321 (661)
|..+..+..+++.++-.+..+- .++.++.-.|+|+ |.+=-+.....+-...++++..+.....-. .+ +..+
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~-----~~-~~~~ 262 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGN-----AD-SIAD 262 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Cc-hHHH
Confidence 3444556666655554444443 3466666666655 333223333333333334433333332211 12 4455
Q ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 322 AFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 322 a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
.....|+ +..+..+.++++..++....+++.+
T Consensus 263 ~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ 294 (442)
T COG1457 263 VMLGLGG--FGLPAILILVLGTVTTNANNLYSAG 294 (442)
T ss_pred HHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555554 4444444555555554444444433
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.26 E-value=0.0073 Score=66.07 Aligned_cols=366 Identities=14% Similarity=0.090 Sum_probs=192.3
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G 125 (661)
-+|+-++++.+.+=.+...-.+-+.+.+.....--++ ..+++.+++-++....+..-+..++++-. +.-.-.+..||
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~RaSFG 114 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRASFG 114 (497)
T ss_pred ccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHHHHh
Confidence 5788999999888777666666555555433222234 37777777777666666555555555433 23455777788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CChhhHhhhccCCCCccchhHHHHHHHH-HHHHHHHHhhH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA---DSLPFFMARQQIPGLGIIVDPCAAILVL-IVTGLLCVGIK 201 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~a~~ii~-~~~~i~~~G~k 201 (661)
...+-+-..+-.+..+..-+..+...+..++.++... ...|... .+..+.+.. .+++..+.+ +...+...|.+
T Consensus 115 i~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~--~~~lg~tt~-~~i~F~ifW~l~~l~~~~g~~ 191 (497)
T COG1953 115 IYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTL--SPLLGLTTL-ELICFFIFWVLQLLVLFKGME 191 (497)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCcc--ccccCCcHH-HHHHHHHHHHHHHHHHhcCHH
Confidence 7766555554444444444444444444444444321 1111100 011222222 234444444 45556678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCC-CCCCchhHHHHHHHHHH--HHHhhhhhHHhcchhhhcCc
Q 006102 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPT-GYFPFGVNGMLAGSATV--FFAFIGFDAVASTAEEVKNP 278 (661)
Q Consensus 202 ~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~-~~~p~g~~gi~~~~~~~--~faf~G~e~ia~~a~E~knP 278 (661)
..+|++.+...+..+..+.+.+....+....+.....+.+ .-.+.-+..++.++... +|| ...-.++..+.+.|+|
T Consensus 192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~A-tl~lN~~DFsRfa~s~ 270 (497)
T COG1953 192 SIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWA-TLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHH-HHhcCCchhhcccCCh
Confidence 9999999999999999988888877765442211100100 00111122233333211 121 3344556777888875
Q ss_pred ccCcchHhHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHHhhhchhhH
Q 006102 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPY-YEMDPDTPISSAFASHGMHWASY-VITIGAVTALCSTLMGSILPQPR 356 (661)
Q Consensus 279 ~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~-~~~~~~~~~~~a~~~~g~~~~~~-iv~i~~~~~~~~s~~~~~~~~sR 356 (661)
|+.-++-++++.+...+..++.++.+...-. ...+.-+|. ++..+........ +..+..+++.+++-.+.-...+-
T Consensus 271 -~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~ 348 (497)
T COG1953 271 -KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPG 348 (497)
T ss_pred -hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChH
Confidence 5566677777777777766666655533210 011112343 3445555444443 66666666666665554444443
Q ss_pred HHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHH--HHHHHHHHHHHhhccC
Q 006102 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVS----ALAGMVSVGTLL--AFTMVAISVLILRYVP 430 (661)
Q Consensus 357 ~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~----~L~~l~s~~~l~--~y~~v~~~~i~lR~~~ 430 (661)
.-.+ +++||... -| ++-+++++++.++.-.-..+ ...-+.+.+.++ ....+++-..+.||++
T Consensus 349 ~D~s----~l~Pk~in---~k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyflirk~~ 416 (497)
T COG1953 349 YDLS----ALFPKYIN---IK-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYFLVRKGR 416 (497)
T ss_pred HHHH----Hhcccccc---hh-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3222 47887765 22 23555665555432221111 122233333333 2345566777788877
Q ss_pred CC
Q 006102 431 PD 432 (661)
Q Consensus 431 ~~ 432 (661)
.+
T Consensus 417 ~~ 418 (497)
T COG1953 417 LN 418 (497)
T ss_pred cC
Confidence 65
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=98.12 E-value=0.026 Score=61.90 Aligned_cols=221 Identities=16% Similarity=0.065 Sum_probs=117.3
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
+|+ +.++..+.=+|..+....+...+.++....=..++++.+++.++........+-.+.++-. +.....+..||..
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~~ 84 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGEK 84 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhchh
Confidence 344 7788766666655555455544544322222346676676666555444444555544333 4677888899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006102 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (661)
Q Consensus 128 ~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~ 207 (661)
-+.+.+....+..+...+......+..+...++ .+. ....+++.++.......|.|...+++
T Consensus 85 Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~----~~~--------------~~~~~i~~~l~~~~~~~G~~~i~~~~ 146 (404)
T PRK11017 85 GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG----LDI--------------NLLIVLSGLLMTVTAYFGISALTILS 146 (404)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776665555545544433333333222 110 01233445566677788999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHH-hhhhhHHhcchhhhcCcccCcchHh
Q 006102 208 AIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFA-FIGFDAVASTAEEVKNPQRDLPLGI 286 (661)
Q Consensus 208 ~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~fa-f~G~e~ia~~a~E~knP~k~iP~ai 286 (661)
++...+..+.++...+..... .+++.+..+.. |.+...+..++..++-. ..+.-..+.++...|+|++ .-.+.
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~--~~g~~~~~~~~---~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~ 220 (404)
T PRK11017 147 RIAVPAIALLGGYSVWLAVND--VGGLDGLKAIV---PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLAT 220 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCchhhhhcCC---CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehh
Confidence 988777766555444332222 12222111111 11112344444332222 3445566788888887643 33555
Q ss_pred HHHHHHHHH
Q 006102 287 GTALSICCA 295 (661)
Q Consensus 287 i~s~~i~~v 295 (661)
..+..+...
T Consensus 221 ~lg~~i~~~ 229 (404)
T PRK11017 221 MVAFFLGNS 229 (404)
T ss_pred HHHHHHHHH
Confidence 555544433
No 71
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.06 E-value=0.0042 Score=66.99 Aligned_cols=255 Identities=19% Similarity=0.262 Sum_probs=125.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-C-ccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 81 SGPALALSFLIAGIASAFSAFCYAELASRCPS-A-GSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAML 158 (661)
Q Consensus 81 aGp~~il~~ll~~l~~l~~al~~aElas~~P~-~-Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~ 158 (661)
-|...+|..+++.+ ..+.+-|++.|+-. + -+...-.++-+|+.+++...-...+...........+.+.-++.+
T Consensus 11 ~Gy~Llw~lll~~~----~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll 86 (358)
T PF01566_consen 11 YGYSLLWVLLLSNL----LKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLL 86 (358)
T ss_pred HCHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46565555554444 45666677777664 2 356666688889998888887777766666555555554444433
Q ss_pred HccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 006102 159 FGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE 238 (661)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~ 238 (661)
++ .|.+. .+.+..+.+..+.++..+..+++++++..+..+..+.+++..+... .+|....
T Consensus 87 ~g----~~~~~--------------~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~--p~~~~~~ 146 (358)
T PF01566_consen 87 FG----IPLWI--------------WVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVH--PDWGEVA 146 (358)
T ss_pred cC----CCcHH--------------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHh
Confidence 32 22221 1333333333333322344555555555555544333333332221 1111100
Q ss_pred CC--CCCCCchhHHHHHHHHHHHHHhhhhhHHhcc---hhh------------hcCcccCcchHhHHHHHHHHHHHHHHH
Q 006102 239 LP--TGYFPFGVNGMLAGSATVFFAFIGFDAVAST---AEE------------VKNPQRDLPLGIGTALSICCALYMLVS 301 (661)
Q Consensus 239 ~~--~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~---a~E------------~knP~k~iP~aii~s~~i~~v~Yil~~ 301 (661)
.. .+-.|. ..++...++..=.....++...+- .|+ .|.-++|.-.++..+.++...+++...
T Consensus 147 ~g~~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A 225 (358)
T PF01566_consen 147 RGLVVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAA 225 (358)
T ss_pred hhccCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011121 111222222211112222221111 111 222233333344333333333333332
Q ss_pred HHHHhcccCCCCCCCCHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 006102 302 IVIVGLVPYYEMDPDTPISSAFASHGM-HWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (661)
Q Consensus 302 ~~l~~~vp~~~~~~~~~~~~a~~~~g~-~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (661)
.++. -+..+....+...++++..-+ +|...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 226 ~~l~--~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 226 AVLY--PGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHhc--ccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 2222 111223344566777887777 7999999999999999999999988888876654
No 72
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.04 E-value=0.00084 Score=73.70 Aligned_cols=294 Identities=19% Similarity=0.136 Sum_probs=133.7
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
.|+++++-+.+--+++.+|++-+......++. .|....+..+...+.....++.++.--.+. +.-....|.++-+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 37889988877777777877766655444544 354433323333333344444444443332 3357899999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 128 V--AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 128 ~--gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
. ..+.+....+......+....+.+..++..++ .|.... ..+..++++.....-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i~~~~~-------------~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----IPYNTA-------------ILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHH-------------HHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc----hhhhHH-------------HHHHHHHHHHhhhhhhHhhhhH
Confidence 7 56655555666666777777777777776654 222110 0111112222333456776665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc------------ccCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHHhcch
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGF------------KTGWSGYELPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTA 272 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~------------~~~~~~~~~~~~~~p~-g~~gi~~~~~~~~faf~G~e~ia~~a 272 (661)
.+.+-..+.++..+++.+..+.... ..+.....++.++... +............+...+.....+-.
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 225 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRF 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHH
Confidence 5555555544443333333222110 0000111111111000 00000000001112222222222222
Q ss_pred hhhcCcccCcchHhHHHHHHHHHHHHH------HHHHHHhcccC----CCCCCCCHHHHHHHHcCchHHHHHHHHHHHHH
Q 006102 273 EEVKNPQRDLPLGIGTALSICCALYML------VSIVIVGLVPY----YEMDPDTPISSAFASHGMHWASYVITIGAVTA 342 (661)
Q Consensus 273 ~E~knP~k~iP~aii~s~~i~~v~Yil------~~~~l~~~vp~----~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~ 342 (661)
--.||+ |+..|+...+.....+++.. ....+....|. ++.+++..+....++...++..-++..+++.+
T Consensus 226 ~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA 304 (406)
T PF00474_consen 226 LAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAA 304 (406)
T ss_dssp HSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHh
Confidence 223443 56667766665444333333 12222222231 12233456777777778888888888888888
Q ss_pred HHHHHHhhhchhhHHHHHHHhc
Q 006102 343 LCSTLMGSILPQPRILMAMARD 364 (661)
Q Consensus 343 ~~~s~~~~~~~~sR~l~ama~d 364 (661)
..++..+.+.+.+-.+ +||
T Consensus 305 ~~ST~~s~l~a~ss~~---~~D 323 (406)
T PF00474_consen 305 IMSTADSLLLAISSIF---SRD 323 (406)
T ss_dssp HHHHHHHHHHHHHHHH---HHH
T ss_pred hhHHHHHHHhhhhhhh---hHH
Confidence 8888888887777664 555
No 73
>PRK12488 acetate permease; Provisional
Probab=97.93 E-value=0.076 Score=60.68 Aligned_cols=155 Identities=16% Similarity=0.100 Sum_probs=90.6
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHhccCCCCccHHHHHHHHhc-
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASA-FSAFCYAELASRCPSAGSAYHYSYICVG- 125 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l-~~al~~aElas~~P~~Gg~y~y~~~~~G- 125 (661)
.|+++++...+...+..++++-|......++. .|...++ +.++..... ...+.+++--.+.-. =..+.|.++-+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 47899999987777777888777655544544 3543322 222222222 233445554444332 367778888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
+....+++....+..+........+.+..++.+++ +|.+.. +.+..++.......-|.|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG----ISYLYA-------------VVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhccchhHHHH
Confidence 55788888877777777777777777777776654 222211 0112222233344567888777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006102 206 AQAIVTTANVLAMLFVI 222 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~ii 222 (661)
.+.+=.++.++..+++.
T Consensus 206 td~iQ~~im~~~~i~~~ 222 (549)
T PRK12488 206 VQIIKAVLLLSGTSFMA 222 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77666666655544433
No 74
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.92 E-value=0.034 Score=62.62 Aligned_cols=109 Identities=18% Similarity=0.070 Sum_probs=73.5
Q ss_pred ccccCHHHHHHHHHhhh-hh-hHHHHHHHHHHHhccChH-HHHHHH---HHHHHHHHHHHHHHHHhccCCCCccHHHHHH
Q 006102 48 AKNLTIPHLVAIGVGST-IG-AGVYILVGTVAREHSGPA-LALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~-iG-~Gif~~~g~ia~~~aGp~-~il~~l---l~~l~~l~~al~~aElas~~P~~Gg~y~y~~ 121 (661)
.|+++++ ..++..+.. .+ .-.+..+|. ++. .|.. .++... .+.+.....+--..+++ +-+..=..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~-ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGL-AYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHH-HHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5789998 666655554 44 344445554 433 3544 333222 23334445555566666 5555668999999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006102 122 ICVG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFG 160 (661)
Q Consensus 122 ~~~G-~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~ 160 (661)
+-+| +....+.+....+..+...+....+.+..++..++
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999 88999999999999999999998888888866654
No 75
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.90 E-value=0.061 Score=58.62 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 006102 83 PALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA 162 (661)
Q Consensus 83 p~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~ 162 (661)
+..+++.+++.++........+..+.+.-. ......+..||.+-+.+......+..+...+......++.++.+.+..
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666666666555444455555555443 477888999999988888888888877777777777777777665421
Q ss_pred CChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCC
Q 006102 163 DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTG 242 (661)
Q Consensus 163 ~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~ 242 (661)
++. ... .....++.++.......|.|..++++.+...+.++..+...+..+.+.+.... ...+++
T Consensus 107 --~~~---------~~~--~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (386)
T TIGR02358 107 --FGE---------ESP--MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGD 171 (386)
T ss_pred --cCC---------Cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCC
Confidence 010 000 01123333456667789999999999999888877776655544443221110 111111
Q ss_pred CCCchhHHHHHHHHHHHHH-hhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHH
Q 006102 243 YFPFGVNGMLAGSATVFFA-FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS 321 (661)
Q Consensus 243 ~~p~g~~gi~~~~~~~~fa-f~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~ 321 (661)
.+ +..+...++-. -.+.-..+.++...|+|+ +.-++...+..+...+..++........+. .+|. +
T Consensus 172 -~s-----~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~ 238 (386)
T TIGR02358 172 -MS-----FAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-S 238 (386)
T ss_pred -cc-----HHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-H
Confidence 11 22222222211 122233678888888764 455676666666666655555544444332 2343 3
Q ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 322 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 322 a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
.....+.. .+..+..+++..++...+.++.+--+
T Consensus 239 ~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l 272 (386)
T TIGR02358 239 ILAGAGLG---IPALLIILLSTVTTTFMDIYSAAIST 272 (386)
T ss_pred HHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333322 23334444555554444444443333
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.87 E-value=0.085 Score=59.42 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=135.8
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCccHHHHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCP----SAGSAYHYSYIC 123 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P----~~Gg~y~y~~~~ 123 (661)
.|+++++-..+-..++.+++..+......++. .|....+..+-..+..+...+.+++--.++. ..-..+.|.++-
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 47888887765555555665555433323333 3544322221112222333444444333222 234589999999
Q ss_pred hch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 006102 124 VGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (661)
Q Consensus 124 ~G~---~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~ 200 (661)
+|+ ....+.+-...+......+....+.+..++.+++ .|.+.. ..+..++.+.....-|.
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG----LDYKTG-------------LLIGALIIVIYTFFGGF 176 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccHHHH-------------HHHHHHHHHHHHHhhhH
Confidence 984 3444455444444444555666666666666654 222211 11222333445556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC----C--CCC---CCCCCchhHHHHHHHHHHHHHhhhhhHHhcc
Q 006102 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG----Y--ELP---TGYFPFGVNGMLAGSATVFFAFIGFDAVAST 271 (661)
Q Consensus 201 k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~----~--~~~---~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~ 271 (661)
|...+...+=.++.++..+++.+..+... +++.. . .++ +.+.+..+.++...+.. .+.+.|.....+-
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~--GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR 253 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNL--GGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVR 253 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHH
Confidence 87777766666665554443333322221 11100 0 000 11112222333322211 1122222222211
Q ss_pred hhhhcCcccCcchHhHHHHHHHHHHHHHHHH-HHHh--cccCC-C---CCCCCHHHHHHHHcCchHHHHHHHHHHHHHHH
Q 006102 272 AEEVKNPQRDLPLGIGTALSICCALYMLVSI-VIVG--LVPYY-E---MDPDTPISSAFASHGMHWASYVITIGAVTALC 344 (661)
Q Consensus 272 a~E~knP~k~iP~aii~s~~i~~v~Yil~~~-~l~~--~vp~~-~---~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~ 344 (661)
.=-.||+ |+..|+...+.....+.++...+ .+.+ ..+.. + .+++..+....++...++..-++..+++.+..
T Consensus 254 ~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 254 FMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 2223443 56667766664332222211111 1111 11111 1 13344566666666778888888888888888
Q ss_pred HHHHhhhchhhHHH
Q 006102 345 STLMGSILPQPRIL 358 (661)
Q Consensus 345 ~s~~~~~~~~sR~l 358 (661)
++..+.+.+.+-.+
T Consensus 333 ST~~s~l~s~ss~~ 346 (487)
T TIGR02121 333 STISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776553
No 77
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.75 E-value=0.14 Score=58.45 Aligned_cols=324 Identities=15% Similarity=0.128 Sum_probs=150.3
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHhccCCCCccHHHHHHHHhc-
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASA-FSAFCYAELASRCPSAGSAYHYSYICVG- 125 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l-~~al~~aElas~~P~~Gg~y~y~~~~~G- 125 (661)
.|+++++...+-..+..+++.-|......++. .|...++.. ++..... ...+.+++--.+.-. =....|.++-+|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 57899987655555666666555544433433 354432212 2222222 334555665444332 356666777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
+....+.+....+..+........+.+..++.+++ .|.+.. +.+..++.......-|.|...+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG----LNYHVA-------------VVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhhHHHHH
Confidence 55667767666665555666666666666666654 222211 1122223333444567887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCC----------CC----CCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcc
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGW----------SG----YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAST 271 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~----------~~----~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~ 271 (661)
.+.+=.++.++..+++.+....... .++ ++ ...+++.....+. .+.......+.+.|..-..+-
T Consensus 206 td~iQ~~im~~g~i~~~~~~~~~~g-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~g~P~~~~R 283 (549)
T TIGR02711 206 VQIIKAVLLLFGATFMAFMVMKSVG-FSFNTLFKEAMAVHPKGVAIMSPGGLVSDPIS-ALSLGLGLMFGTAGLPHILMR 283 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhhCcccccccCCCccccchHH-HHHHHHHHHHHhcCCchhhee
Confidence 7766666665544433332221110 000 00 0001110001111 111111112233333222222
Q ss_pred hhhhcCcccCcchHhHHHHHHHHHHHHHHHHHH---HhcccCC-CC-C--------CCCHHHHHHHHcCchHHHHHHHHH
Q 006102 272 AEEVKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYY-EM-D--------PDTPISSAFASHGMHWASYVITIG 338 (661)
Q Consensus 272 a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l---~~~vp~~-~~-~--------~~~~~~~a~~~~g~~~~~~iv~i~ 338 (661)
.=-+|| .|+..|+..++......+|+...+.- ...++.+ +. + ++..........++.++.-++..+
T Consensus 284 ~~taks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~ 362 (549)
T TIGR02711 284 FFTVSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAV 362 (549)
T ss_pred eeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHH
Confidence 223455 36777888887776666665543221 1122211 11 0 112222333445666666677777
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHhc---CCC-ccccccccccccCcchHHHHHHHHHHHHHHh
Q 006102 339 AVTALCSTLMGSILPQPRILMAMARD---GLL-PPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (661)
Q Consensus 339 ~~~~~~~s~~~~~~~~sR~l~ama~d---g~l-P~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~ 398 (661)
++.+..++..+.+.+.+-.+ ++| +.+ |+.-++.+. .+.-..++++.++++.+++..
T Consensus 363 ~~AA~mST~~s~l~a~st~i---~~Diy~~~~~~~~~s~~~~-~~v~Ri~~vv~g~ia~~~a~~ 422 (549)
T TIGR02711 363 AFATILAVVAGLTLAGASAV---SHDLYANVIKKGKATERDE-LRVSKITVLILGVIAIGLGIL 422 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCChhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666665555332 333 112 111111111 133334556666666666654
No 78
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.73 E-value=0.11 Score=57.56 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCC-Cc-cHHHHHHHHhchhHHHHHHHHHHHHHH
Q 006102 64 TIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AG-SAYHYSYICVGEGVAWLIGWALILEYT 141 (661)
Q Consensus 64 ~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~-~G-g~y~y~~~~~G~~~gfi~gw~~~l~~~ 141 (661)
-+|.|-+.+..+ +...-|-..+|..+++.+. +..+-|++.|+-. +| |...-.++-+|+.++++......+...
T Consensus 47 ~idpG~i~t~~~-aGA~~Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~ 121 (439)
T PRK00701 47 YMDPGNWATNIQ-GGSQFGYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIM 121 (439)
T ss_pred eecchHHHHHHH-HHHHHCHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 356666554443 3333455555555555544 5566666666655 34 788888899999887766544444443
Q ss_pred HHHHHHHHHH
Q 006102 142 IGGSAVARGI 151 (661)
Q Consensus 142 ~~~aa~a~~~ 151 (661)
........+.
T Consensus 122 ~~~~~e~~G~ 131 (439)
T PRK00701 122 ATDLAEVIGA 131 (439)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 79
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0034 Score=68.42 Aligned_cols=250 Identities=13% Similarity=0.045 Sum_probs=128.9
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
+++.+.+..+.--..+++|+|++..+.. ...+|-. .++.....++.+.....++.+.+.+.++. ..-.-.+..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a--fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA--FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH--HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 4556777888888899999999999865 3456743 45556667888888899999999998886 444455555665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 006102 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~ 206 (661)
.-.....-..-.. ..+..++.....+.+..+.......++ ... + ....... +.-.....+.-+...+.+. +-+.
T Consensus 80 ~g~~~~~v~~~~~-~~g~i~yliiigd~~p~~~~~~~~~~~-~~~-~-~~~~~~~-ill~~~~~i~pLsl~k~l~-~Lk~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCF-GVGMVSYLIIIGDLLPGFIRSLFLDEE-GGS-H-YLDRNFL-ILLVLLFIILPLSLLKNLD-SLKY 153 (411)
T ss_pred CceeeehhhHHhh-hccceEEEEEEccccchhhhhcccccc-ccc-c-cccceeE-eehHHHHHHHHHHHHHhhh-hHHH
Confidence 4311111110000 000000000000011111110000000 000 0 0001110 0111111112222222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchh--HHHHHHHHHHHHHhhhhhHHhcchhhhcCcc-cCcc
Q 006102 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGV--NGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLP 283 (661)
Q Consensus 207 ~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~--~gi~~~~~~~~faf~G~e~ia~~a~E~knP~-k~iP 283 (661)
....+....+.++++++............ .....|.+. .+++.+++..+|+|.........-.|.|||+ |++-
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~ 229 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGR----LSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCC----cccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHH
Confidence 33333333333333333222221110010 111222222 5789999999999999999999999999996 7888
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcccC
Q 006102 284 LGIGTALSICCALYMLVSIVIVGLVPY 310 (661)
Q Consensus 284 ~aii~s~~i~~v~Yil~~~~l~~~vp~ 310 (661)
+....+...+.++|......-....+.
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~ 256 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGD 256 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecc
Confidence 899999999999998887665555443
No 80
>PRK09395 actP acetate permease; Provisional
Probab=97.66 E-value=0.2 Score=57.40 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=85.3
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhccCCCCccHHHHHHHHhc-
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVG- 125 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~-l~~al~~aElas~~P~~Gg~y~y~~~~~G- 125 (661)
.|+++++-..+...+..++++-|......++. .|...++ +.++..++ ....+.+++--.+.. .-..+.|.++-+|
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 57899988777667777777776655544443 4554332 22222222 223333343322222 1356677778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
+....+.+....+..+...++...+.+..++.+++ .|.+.. ..+..++.......-|.|...+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~~-------------ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHVA-------------VVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhhcchHHHHH
Confidence 55788888877776666667777777776766654 222211 1122222333444557887777
Q ss_pred HHHHHHHHHHHHHHHH
Q 006102 206 AQAIVTTANVLAMLFV 221 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~i 221 (661)
.+.+=.++.++..+++
T Consensus 208 TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 208 VQIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555544333
No 81
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.65 E-value=0.12 Score=56.65 Aligned_cols=315 Identities=16% Similarity=0.118 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHH-HHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHH
Q 006102 64 TIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSA-FCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILE 139 (661)
Q Consensus 64 ~iG~Gif~~~g~ia~~~aGp~---~il~~ll~~l~~l~~a-l~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~ 139 (661)
-.|+|...-|..... .+|.. +.++|+++++..=..+ ++.+. ..|+.+. ..+-.|+.+|.+..-...+.
T Consensus 16 FFGAGNLIFPp~lG~-~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~------~~~~~~~-l~~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 16 FFGAGNLIFPPFLGQ-QAGSNWWPAMIGFLLTGVGLPLLGVIAVAK------SGGGIED-LASRVGPKFALIFTILIYLS 87 (427)
T ss_pred HhCCccccchHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCHHH-HhcccCcHHHHHHHHHHHHH
Confidence 468888887777554 46653 5667777776433322 22211 1234444 44557888777666443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006102 140 YTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAML 219 (661)
Q Consensus 140 ~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll 219 (661)
-.. .-+..|..+....-.+.. ..|. ......-+..+++..+..++...--|...++.++++-+.++.++
T Consensus 88 IGP-~~aiPRtaa~sfe~~i~p--~~~~--------~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ 156 (427)
T PF05525_consen 88 IGP-LFAIPRTAAVSFEMGIAP--FFPE--------NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLA 156 (427)
T ss_pred HHh-cccCcchhhhhHHHhhhc--cCCc--------ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 111 122333332222211110 0010 00011112456666677777788888999999999999999999
Q ss_pred HHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHH----HHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHH--
Q 006102 220 FVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGS----ATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSIC-- 293 (661)
Q Consensus 220 ~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~----~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~-- 293 (661)
++++.++.....+.-.+ .+.-...|+ ..|+..|= +.+...|...-.-+--....+|+ |+..|.+..+-++.
T Consensus 157 ilii~~i~~p~g~~~~~-~~~y~~~~f-~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~ 233 (427)
T PF05525_consen 157 ILIIKGIFSPIGPPQAP-SGAYASNPF-FKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGI 233 (427)
T ss_pred HHHHHHHHcCCCCcccc-chhhhhhHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHH
Confidence 99999988643322111 100001121 12222221 12233333333333333344443 44445444444444
Q ss_pred --HHHHHHHHHHHHhcccC-C-CCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCcc
Q 006102 294 --CALYMLVSIVIVGLVPY-Y-EMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (661)
Q Consensus 294 --~v~Yil~~~~l~~~vp~-~-~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (661)
.++|......-...... . +.+..+.+..+.++.-++.+..++.+.+.++++++..+-..+.+.....+.
T Consensus 234 lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~------- 306 (427)
T PF05525_consen 234 LLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF------- 306 (427)
T ss_pred HHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 44555444332222221 1 123334567777888889999999999999999999998888887765532
Q ss_pred ccccccccccCcch-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 006102 370 FFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 416 (661)
Q Consensus 370 ~f~~~~~~~~~P~~-a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y 416 (661)
+ +.+++ ..++..+++.+++ ...++.+.++..=...+.|
T Consensus 307 ------~--kisY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 307 ------P--KISYKVWVIIFTIFSFIIA-NLGLDQIIKISVPILMFIY 345 (427)
T ss_pred ------c--ccChHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHh
Confidence 2 22333 3344445555444 4456766666553333334
No 82
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.64 E-value=0.19 Score=56.75 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=131.3
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHH-HHh---ccCCCCccHHHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYA-ELA---SRCPSAGSAYHYSYI 122 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~-l~~al~~a-Ela---s~~P~~Gg~y~y~~~ 122 (661)
.|+++++-..+-..++.+++..+......++. .|....+. .++..+. +.....++ .+. .+.+..-..+.|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 48899988877777777777776654444443 45543221 1221111 11111111 111 112233468899999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHh
Q 006102 123 CVGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (661)
Q Consensus 123 ~~G~---~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G 199 (661)
-+|+ ....+.+....+......+....+.+..++.+++ .|.+.. ..+..++.+.....-|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GG 179 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYETA-------------LWAGAAATILYTFIGG 179 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhhh
Confidence 9984 3554555555555555555655666666665554 222110 1122223344445567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCC---------CCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhc
Q 006102 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG---------YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAS 270 (661)
Q Consensus 200 ~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~---------~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~ 270 (661)
.|...+...+=.++.++..+++.+..+... .++.. ..+.+...+.++..++..+ ...+.+.|..-..+
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~~~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~p~~~q 256 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVIVIISV--GGFGDSLEVIKQKSIENVDMLKGLNFVAIISLM-GWGLGYFGQPHILA 256 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhcCccccCcccCCCHHHHHHHH-HHHHHHcCChHHHH
Confidence 777777666666665554443333322211 11100 0000001111222222211 11222333322211
Q ss_pred chhhhcCcccCcchHhH----HHHHHHHHHHHHHHHHHHh--cccCC----CCCCCCHHHHHHHHcCchHHHHHHHHHHH
Q 006102 271 TAEEVKNPQRDLPLGIG----TALSICCALYMLVSIVIVG--LVPYY----EMDPDTPISSAFASHGMHWASYVITIGAV 340 (661)
Q Consensus 271 ~a~E~knP~k~iP~aii----~s~~i~~v~Yil~~~~l~~--~vp~~----~~~~~~~~~~a~~~~g~~~~~~iv~i~~~ 340 (661)
-.=-.||+ |++.++.. +.........++....... ..|.. ..+++..+.....+...+++.-++..+++
T Consensus 257 R~~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~il 335 (502)
T PRK15419 257 RFMAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAIL 335 (502)
T ss_pred hheecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHH
Confidence 11122332 22222322 2222111111111111111 11211 11334456666666677888888888888
Q ss_pred HHHHHHHHhhhchhhHH
Q 006102 341 TALCSTLMGSILPQPRI 357 (661)
Q Consensus 341 ~~~~~s~~~~~~~~sR~ 357 (661)
.+..++..+.+.+.+-.
T Consensus 336 AA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 336 AAVMSTLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888777654
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.54 E-value=0.28 Score=56.12 Aligned_cols=148 Identities=9% Similarity=-0.023 Sum_probs=87.2
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPAL---ALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~---il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
.|+++++-..+-..++.+++.-|......++. .|... .+++.++ ....++.+++.-++... -..+.|..+-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 47899998877777777777666654443433 35432 2223222 23345666777666643 47999999999
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 125 GE-GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 125 G~-~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
|. ....+.+....+..+...+....+.+..++.+++ .|.+.. +.+..++.......-|.|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE----VDFETG-------------VFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHHH
Confidence 84 4677777777666666667777776767766654 222211 01122222333444577777
Q ss_pred HHHHHHHHHHHHHH
Q 006102 204 TIAQAIVTTANVLA 217 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ 217 (661)
.+...+=.++.++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555443
No 84
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.27 E-value=0.34 Score=53.11 Aligned_cols=271 Identities=15% Similarity=0.094 Sum_probs=140.4
Q ss_pred hhhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHH
Q 006102 64 TIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEY 140 (661)
Q Consensus 64 ~iG~Gif~~~g~ia~~~aGp~---~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~ 140 (661)
-.|+|...-|..... .+|.. +.++|+++++..=+.+.. +...- .|+.....+| .||.+|.+..-...+.-
T Consensus 21 FFGAGNLIFPp~LG~-~aG~~~~~a~~GF~iT~VglPlLgii----ava~~-~g~~~~l~~r-v~~~f~~~f~~~i~l~I 93 (439)
T PRK15433 21 FVGAGNIIFPPMVGL-QAGEHVWTAAFGFLITAVGLPVLTVV----ALAKV-GGGVDSLSTP-IGKVAGVLLATVCYLAV 93 (439)
T ss_pred HhcCcchhccHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHH----HHhhc-CCCHHHHhhh-cchHHHHHHHHHHHHHH
Confidence 368888887777554 46653 566777777643332221 11111 1455554444 77777765544333221
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006102 141 TIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLF 220 (661)
Q Consensus 141 ~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~ 220 (661)
-. .-+..|..+....--+ .|. .+......-+.++++..+..++..+--|...++.++++-+.++.+++
T Consensus 94 GP-~~aiPRtaavsfEm~i-----~p~------~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~ 161 (439)
T PRK15433 94 GP-LFATPRTATVSFEVGI-----APL------TGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVI 161 (439)
T ss_pred hh-ccccCCccccchhhee-----ecc------CCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHH
Confidence 11 1112222111111000 010 01000111134666666777777788888999999999999999999
Q ss_pred HHHhhhhcccccCCCCCCCCCCC--CCchhHHHHH------HHHHHHHHhhhhhHHhcchhhhcCcccCcch----HhHH
Q 006102 221 VIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLA------GSATVFFAFIGFDAVASTAEEVKNPQRDLPL----GIGT 288 (661)
Q Consensus 221 iii~g~~~~~~~~~~~~~~~~~~--~p~g~~gi~~------~~~~~~faf~G~e~ia~~a~E~knP~k~iP~----aii~ 288 (661)
+++.++.+.... ..+. .+.+ .|+ ..|+.. +++...|+..=.+++ -....||+ |++-| +-++
T Consensus 162 lii~~i~~p~g~-~~~~--~~~y~~~~f-~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~-~~~~k~t~~ag~i 234 (439)
T PRK15433 162 LSVAAIVWPAGS-ISTA--TEAYQNAAF-SNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEA-RLLTRYTVWAGLM 234 (439)
T ss_pred HHHHHHhcCCCC-CCCc--chhhhhhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCH-HHHHHHHHHHHHH
Confidence 999988864322 1111 0111 121 122222 222333333222222 23335554 33334 4444
Q ss_pred HHHHHHHHHHHHHHHHHhccc-CCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 289 ALSICCALYMLVSIVIVGLVP-YYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 289 s~~i~~v~Yil~~~~l~~~vp-~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
+...-.++|.....+-....+ .++. +..+-.....++.-++++..+..+....+++++..+...+.++.+..
T Consensus 235 a~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 235 AGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445556555444332222 1112 22222344455667789999999999999999999988888777544
No 85
>PRK10484 putative transporter; Provisional
Probab=97.27 E-value=0.55 Score=53.42 Aligned_cols=297 Identities=13% Similarity=0.036 Sum_probs=136.9
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
.|+++++-..+--.++.++++-|......++. .|...........+...+.++.++.--.+. ..=..+.|.++-+|+.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 58899988777666777777766654444443 465432211223333334444444433332 2247888999999987
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccC--CChhhHhhhccCCCCccchhHHHHH--HHHHHHHHHHHhhHH
Q 006102 128 VAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSA--DSLPFFMARQQIPGLGIIVDPCAAI--LVLIVTGLLCVGIKE 202 (661)
Q Consensus 128 ~gfi~gw~~~l~~~~~-~aa~a~~~~~~l~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~a~~--ii~~~~~i~~~G~k~ 202 (661)
...+.+....+.+... .+....+.+..++.+++.. ...+.... + ....+ .++.......-|.|.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~----------~-~~~~~~~~~i~~~Yt~~GGl~a 183 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAA----------I-WLLVWLIGIIGAIYAVFGGLKA 183 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHH----------H-HHHHHHHHHHHhhhhhhhhHHH
Confidence 6655555554444432 1222122222222222100 00111000 0 00111 112233444567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc----cCCC--------CCCCCC-CCCCchhHHHHHHHHHHHHHhhhhh-HH
Q 006102 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK----TGWS--------GYELPT-GYFPFGVNGMLAGSATVFFAFIGFD-AV 268 (661)
Q Consensus 203 ~~~~~~i~~~~~l~~ll~iii~g~~~~~~----~~~~--------~~~~~~-~~~p~g~~gi~~~~~~~~faf~G~e-~i 268 (661)
..+...+=.++.++..+++.+.++..... +.++ .+...+ ...+..+..++.+.......+.+.+ ..
T Consensus 184 V~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 263 (523)
T PRK10484 184 VAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSI 263 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 77766665555555433332222221100 0000 000000 0111223333333322212222211 22
Q ss_pred hcchhhhcCcccCcchHhHHHHHHHHHHHHHH---HHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHH
Q 006102 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLV---SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCS 345 (661)
Q Consensus 269 a~~a~E~knP~k~iP~aii~s~~i~~v~Yil~---~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~ 345 (661)
.+-.=-.||+ |+..|+...+.....+.+... .+......|.+..++++.+.....+...+++.-++..+++.+..+
T Consensus 264 ~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 264 VQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 2222234553 566677766654443333322 122222334322345566777777777788888888888888888
Q ss_pred HHHhhhchhhHHH
Q 006102 346 TLMGSILPQPRIL 358 (661)
Q Consensus 346 s~~~~~~~~sR~l 358 (661)
+..+.+.+.+-.+
T Consensus 343 T~~s~l~s~st~~ 355 (523)
T PRK10484 343 TFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777666553
No 86
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.14 E-value=0.0082 Score=66.63 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=88.5
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhcc-Ch-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS-GP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~a-Gp-~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
-+|+-++++...+=++..+....+..-... ...+ +. ..+++.+++.++........+.++.+.-. ......+..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhcc
Confidence 357778899988877766666665544432 2222 22 36666666665544443334555544433 4667777889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHH-HHHHHHHHHHHHHhhHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCA-AILVLIVTGLLCVGIKES 203 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a-~~ii~~~~~i~~~G~k~~ 203 (661)
|..-+.+......+..+...+......++.+....+.....+....+ ..... ....+++ ++..++.......|.+..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGN-AIIGI-ALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-------------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhh-hhhcc-hhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 98877777777777666666666666677777766533110111110 00000 0111122 223344555667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006102 204 TIAQAIVTTANVLAMLFVII 223 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii 223 (661)
.+++.+...+.....+...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhheeE
Confidence 88887776665554433333
No 87
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.76 Score=50.25 Aligned_cols=40 Identities=10% Similarity=-0.059 Sum_probs=24.0
Q ss_pred CHHHHHHHHcC---chHHHHHHHHHHHHHHHHHHHhhhchhhH
Q 006102 317 TPISSAFASHG---MHWASYVITIGAVTALCSTLMGSILPQPR 356 (661)
Q Consensus 317 ~~~~~a~~~~g---~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (661)
++..++++... ++....++.++.+.+-.++..+.-++...
T Consensus 269 ~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~ 311 (416)
T COG1914 269 ADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQI 311 (416)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHH
Confidence 45555554442 56666777777777767666665554444
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=95.85 E-value=4.2 Score=45.60 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHH--HHHHHHHHHHHhcCHHHH---H
Q 006102 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMDVSAL---A 405 (661)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l--~~~ii~~l~~~~~~~~~L---~ 405 (661)
++.++....++.++....+...+.+..+-.++.+| +.+|. .+.+..+ ..++++..+.....++.+ .
T Consensus 390 ~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep~--~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ 460 (485)
T PF02028_consen 390 LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEPP--RWLRIFWGLIIGALAIVLLLIGGLDALQSAS 460 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCCc--hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34566666666677777777778888888888777 22222 2222222 334444445555555544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 006102 406 GMVSVGTLLAFTMVAISVLILR 427 (661)
Q Consensus 406 ~l~s~~~l~~y~~v~~~~i~lR 427 (661)
.+.++...+...+.+.+.++.-
T Consensus 461 ii~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 461 IIGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555443
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.76 E-value=4 Score=44.75 Aligned_cols=298 Identities=17% Similarity=0.129 Sum_probs=158.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 006102 81 SGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFG 160 (661)
Q Consensus 81 aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~ 160 (661)
-|-.-.++|..+-. ...++.||--+++-+--=.-.+++|.-.+..-++++.+-++.-.....+...+.+..+..+++
T Consensus 75 dG~~Y~iG~~~Gy~---i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g 151 (529)
T COG4147 75 DGLIYSIGWTGGYP---ILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG 151 (529)
T ss_pred chHHHHHHHHHHHH---HHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 34445556665543 345667776666543211223345555666777777777766666777777777777777765
Q ss_pred cCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--------
Q 006102 161 SADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-------- 232 (661)
Q Consensus 161 ~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~-------- 232 (661)
. |.... +.+..++......+-|+|...|.|.+=.++.+...++..+....+...+
T Consensus 152 v----~~~vg-------------v~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~ 214 (529)
T COG4147 152 V----PYHVG-------------VVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEA 214 (529)
T ss_pred C----Cceee-------------hhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 2 21110 1234444455566778888888887766666665555555444332111
Q ss_pred -CCCCCCC-----CCCCCCchhHHHHHHHHHHHHHhhhhhHHhcc------hhhhcCcccCcchHhHHHHHHHHHHHHHH
Q 006102 233 -GWSGYEL-----PTGYFPFGVNGMLAGSATVFFAFIGFDAVAST------AEEVKNPQRDLPLGIGTALSICCALYMLV 300 (661)
Q Consensus 233 -~~~~~~~-----~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~------a~E~knP~k~iP~aii~s~~i~~v~Yil~ 300 (661)
+-++..+ +.+..... .+..++.++--..|.-..++. ..++| +-.+...+++..+..+|+..
T Consensus 215 ~~~~~~~~~~~~~~pGl~~~~---~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k----~AR~Sv~wA~~fIg~fYi~~ 287 (529)
T COG4147 215 VTVHPKDDGSDIMEPGLLYKD---PIDFISLGFALMVGTAGLPHILMRFFTVPDAK----EARKSVFWATGFIGIFYILT 287 (529)
T ss_pred hhcCcccCcccccCCCCcccC---HHHHHHHHHHHHHccCCCCeEEEEEEecCcHH----HHHHHHHHHHHHHHHHHHHH
Confidence 0111111 11122222 233344444445566655543 33444 44467888889999999876
Q ss_pred HHHHHh----cc--cCC------------CCC------C-CCHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHhhhchh
Q 006102 301 SIVIVG----LV--PYY------------EMD------P-DTPISSAFASHG-MHWASYVITIGAVTALCSTLMGSILPQ 354 (661)
Q Consensus 301 ~~~l~~----~v--p~~------------~~~------~-~~~~~~a~~~~g-~~~~~~iv~i~~~~~~~~s~~~~~~~~ 354 (661)
-+.-.+ +. |.. +.+ - +.....+....+ ++|...+++.+++.+.+++.-+.....
T Consensus 288 ~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~i 367 (529)
T COG4147 288 PIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVI 367 (529)
T ss_pred HHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHH
Confidence 654321 11 111 111 0 223334455566 688888999888888887765555443
Q ss_pred ----hHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006102 355 ----PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVG 411 (661)
Q Consensus 355 ----sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~ 411 (661)
+|=+|.+--|+ ..++..+- ..-..+....++++..+....+- .+..++...
T Consensus 368 asavsHDiY~~vik~----~ase~~~v-~vaRi~~v~~~vva~~lgi~~~g-nVaflVa~A 422 (529)
T COG4147 368 ASAVSHDLYAMVIKK----GATEKKEV-RVARIAVVILGVVAILLGILPPG-NVAFLVALA 422 (529)
T ss_pred HHHHHhHHHHHHhCC----CCCcccee-hhHHHHHHHHHHHHHHheecCCc-cHHHHHHHH
Confidence 44455543332 23332222 34445566666666655544332 444444433
No 90
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.39 E-value=2.2 Score=48.48 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=56.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------cccCCCCCCCCCCCCCchhHHHHHHHHHHHHHh-
Q 006102 193 TGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLG---------FKTGWSGYELPTGYFPFGVNGMLAGSATVFFAF- 262 (661)
Q Consensus 193 ~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~---------~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf- 262 (661)
.....+|+|..+|+......+-.+.++++.+-++... ...+|+ ... +..-...++..++|+.
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~------~l~--~~~vW~~A~~Q~ffsl~ 263 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWS------KLL--DPKVWIAALGQVFFSLS 263 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TT------GTT--SHHHHHHHHHHHHHHTT
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcc------hhh--HHHHHHHHHHHHhhccC
Confidence 3344688998888877666544444444444433321 111222 111 1233466777888887
Q ss_pred hhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHH
Q 006102 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV 303 (661)
Q Consensus 263 ~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~ 303 (661)
.|+-...+++.-.|+ ++|++|........-....++..++
T Consensus 264 ig~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~ 303 (523)
T PF00209_consen 264 IGFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLV 303 (523)
T ss_dssp TTSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTH
T ss_pred CCcceEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHH
Confidence 588888888888776 6788887666666555555444333
No 91
>PLN00151 potassium transporter; Provisional
Probab=95.04 E-value=9.7 Score=44.78 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=102.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhHH
Q 006102 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNG 250 (661)
Q Consensus 180 ~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~g 250 (661)
++-.++.++++.+..+.-+|+...++ .+.-+.++=++.+...|++.....+..-. ..+.|. +..|
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl---~AlnP~Y~~~Ff~~~~~~g 346 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVF---RAFNPVYIYYFFKRNSTKA 346 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhhCHHHHHHHHHhCCCce
Confidence 34456778888888888888765544 44555554455555556554332211100 112221 1111
Q ss_pred HHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchH
Q 006102 251 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 330 (661)
Q Consensus 251 i~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~ 330 (661)
+..+..++.+.+|-|+.- |+-=+-.+|.|.+|-..-+.=+.++-=+...+....-|. ...+||.. .-.+|
T Consensus 347 -w~~LGgVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npFy~----svP~~ 416 (852)
T PLN00151 347 -WSALGGCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIFFS----SVPSS 416 (852)
T ss_pred -EEEecceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHH----hCCch
Confidence 112334577788888763 333344467776665543433333322233333332221 22445543 22333
Q ss_pred HHHHHHH-HHHHHHHHH--HHhhhchhhHHHHHHHhcCCCccc-ccccccc--cc--CcchHHHHHHHHHHHHHHhcCHH
Q 006102 331 ASYVITI-GAVTALCST--LMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVS 402 (661)
Q Consensus 331 ~~~iv~i-~~~~~~~~s--~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~--~P~~a~l~~~ii~~l~~~~~~~~ 402 (661)
+.|-+.+ +.+.++.+| +++..++ +....-+-|.+|+. .-+++++ .+ .|..-.++...+.++...+-+.+
T Consensus 417 ~~wP~~vlAtlAaIIASQA~ISgtFS---ii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~ 493 (852)
T PLN00151 417 LFWPVFLIANLAALIASRAMTTATFS---CIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSIT 493 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHH
Confidence 3332222 222233332 3333333 33334456899942 2223322 12 45444444444444444556777
Q ss_pred HHHHHHHHHHHHHHH
Q 006102 403 ALAGMVSVGTLLAFT 417 (661)
Q Consensus 403 ~L~~l~s~~~l~~y~ 417 (661)
.+.+...++....++
T Consensus 494 ~l~~AYGiAV~~vM~ 508 (852)
T PLN00151 494 DIGNAYGIAEVGVMM 508 (852)
T ss_pred HHHHHhhhhhhhhhh
Confidence 888877776554443
No 92
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=94.53 E-value=8.5 Score=41.69 Aligned_cols=277 Identities=17% Similarity=0.101 Sum_probs=136.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHHHHHHH
Q 006102 59 IGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (661)
Q Consensus 59 l~ig~~iG~Gif~~~g~ia~~~aGp~---~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gfi~gw~ 135 (661)
+-++--.|+|...-|.... ..+|.. +.++|+++|+..=..+..- .-..||.+.=..+-.||..|.+..-.
T Consensus 13 mLFalFFGAGNlIFPP~LG-~~aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~~ 85 (431)
T COG1114 13 MLFALFFGAGNLIFPPMLG-LHAGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAIA 85 (431)
T ss_pred HHHHHHhcCCCccCChhhh-hhcCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHHH
Confidence 3344346777777666543 446653 5667777776432222221 11224433334444677776554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006102 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (661)
Q Consensus 136 ~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l 215 (661)
.++.--.. -+..|..+....-.+. |. . ........-+.+++...+..++.+.-.|...++..+++-+++
T Consensus 86 iyLsIGPf-fAiPRt~~vsfe~~i~-----p~-~----~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilL 154 (431)
T COG1114 86 IYLSIGPF-FAIPRTGAVSFEVGIS-----PL-L----GDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILL 154 (431)
T ss_pred HHHHhccc-ccCCcccchhHHHhhh-----cc-c----CCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHH
Confidence 32221110 0111111111111110 00 0 000112222356677777777888888999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCCCCCCC--CCchhHHHHHH----HHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHH
Q 006102 216 LAMLFVIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLAG----SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (661)
Q Consensus 216 ~~ll~iii~g~~~~~~~~~~~~~~~~~~--~p~g~~gi~~~----~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s 289 (661)
+.++.+++..+.......-+ . ++.+ .|+ ..|+..| =..+.++|...-.-+.=..-++++ |++.+-.+.+
T Consensus 155 v~l~il~i~~~~~p~g~~~~-a--~~~y~~~pf-~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~a 229 (431)
T COG1114 155 VLLLILVIAAIIPPAGPISA-A--SGAYQSQPF-SKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKA 229 (431)
T ss_pred HHHHHHHHHHHhCCCCCccc-c--cHHHHhChH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHH
Confidence 99888888866643322111 0 1111 222 1222222 123444454444444444444443 3444554444
Q ss_pred HHHHHHHHHHHHHHHHhcc--cCCCC---CCC-CHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 290 LSICCALYMLVSIVIVGLV--PYYEM---DPD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 290 ~~i~~v~Yil~~~~l~~~v--p~~~~---~~~-~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
-++..+.-.++...+..+- ..+.. ++. .-+..+-++.-|+....+..+.+.++++++..+-..+.+...
T Consensus 230 glIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF 304 (431)
T COG1114 230 GLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFF 304 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333222 22111 111 123444455567778888888888899998888776666554
No 93
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.98 E-value=9.7 Score=43.45 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006102 182 DPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF 230 (661)
Q Consensus 182 ~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~ 230 (661)
+.+-..++.+...+|..|++............|++.++.+++.+++..-
T Consensus 156 ~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~ 204 (554)
T KOG1286|consen 156 GGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIA 204 (554)
T ss_pred CccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeec
Confidence 4456677888899999999999999999999999999999999887543
No 94
>PLN00149 potassium transporter; Provisional
Probab=93.93 E-value=9.1 Score=44.90 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhHHHHH
Q 006102 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNGMLA 253 (661)
Q Consensus 183 ~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~gi~~ 253 (661)
.++.++++.+..+.-+|+...+ ..+.-+.++=++.+.+.|++.....+..-. ..+.|+ +..| +.
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~f~~~~~~~g-~~ 272 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVY---QALSPYYMYKFLKKTQRGG-WM 272 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHh---hhcCHHHHHHHHHHCCCce-eE
Confidence 4677777778888888866544 445555555555555666654433221110 122232 1111 12
Q ss_pred HHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHH
Q 006102 254 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASY 333 (661)
Q Consensus 254 ~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~ 333 (661)
.+..++.+.+|-|+.- |+-=+-.+|.|.+|-..-+.=+.++-=+...+....-|...-+..+||... ..+|+.+
T Consensus 273 ~LGgV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~ 346 (779)
T PLN00149 273 SLGGILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRW 346 (779)
T ss_pred eecchhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHH
Confidence 2345678888999763 333344467777776544444433333333333333332222334465532 2334333
Q ss_pred HHHHH-HHHHHHHHHHhhhchhhHHHHHHHhcCCCccc-ccccccc--cc--CcchHHHHHHHHHHHHHHhcCHHHHHHH
Q 006102 334 VITIG-AVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALAGM 407 (661)
Q Consensus 334 iv~i~-~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~--~P~~a~l~~~ii~~l~~~~~~~~~L~~l 407 (661)
-+.+. .+.++.+| -+.+.+.-.+....-+-|.+|+. .-+++++ .+ .|..-.++...+.++...+-+.+.+.+.
T Consensus 347 P~~vlAtlAaIIAS-QA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~A 425 (779)
T PLN00149 347 PVLVIAILAAVVGS-QAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNA 425 (779)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHH
Confidence 33222 22222222 11122222333344456899942 2223322 13 4444444443333344445577778877
Q ss_pred HHHHHHHHHH
Q 006102 408 VSVGTLLAFT 417 (661)
Q Consensus 408 ~s~~~l~~y~ 417 (661)
..++.....+
T Consensus 426 YGiAV~~vM~ 435 (779)
T PLN00149 426 SGLAVITVML 435 (779)
T ss_pred hhhhhehHHH
Confidence 7766544443
No 95
>PRK09950 putative transporter; Provisional
Probab=93.42 E-value=16 Score=41.06 Aligned_cols=104 Identities=9% Similarity=0.053 Sum_probs=52.8
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHH
Q 006102 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (661)
Q Consensus 318 ~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~ 397 (661)
.+.+.+++. .+..++.+..++.++....++..+.+-.+-.++.+|.=+ +.||+...-..=-+..++++..+..
T Consensus 390 a~~~~l~~l---P~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~----~~~P~~~~ri~W~i~~g~ia~~Ll~ 462 (506)
T PRK09950 390 AVQQLLSSL---PAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE----GDDPDRGLRLFWCVVITLIPLSILF 462 (506)
T ss_pred HHHHHHHhC---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC----CCCCCcchhHHHHHHHHHHHHHHHH
Confidence 344444444 245666666677777777888888888888887766533 1122211111112233344444444
Q ss_pred hcC-HHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Q 006102 398 FMD-VSALAGMVS---VGTLLAFTMVAISVLILRY 428 (661)
Q Consensus 398 ~~~-~~~L~~l~s---~~~l~~y~~v~~~~i~lR~ 428 (661)
... ++.+-++.. +...+...+.+.+.++--+
T Consensus 463 ~gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k~l~ 497 (506)
T PRK09950 463 TGASLDTMKTTVVLTALPFLVILLIKVYGFIRWLK 497 (506)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 554444443 3344444445555554433
No 96
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=92.23 E-value=19 Score=39.74 Aligned_cols=310 Identities=11% Similarity=0.009 Sum_probs=141.9
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS--GPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~a--Gp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
-+|+-++++-+.+=.+..++.+-+...+... +.+ -+..++.++++-++...-...-+..++.+-.+ .-.-.+..|
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l-~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhIs--Fpv~sR~sF 128 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSAL-ELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHIS--FPVLSRSSF 128 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHH-hccCCHHHHHHHHHHHHHHHHHHHHHccCCCcccccc--eeeeeeeeh
Confidence 4688999999988777777777776666532 322 12366666665554433333323332222110 001122233
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHH-HHHHh
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISP----NLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG-LLCVG 199 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~----~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~-i~~~G 199 (661)
|-..+-.--.+-.+..++.-+..+...++ .+.+++++....|..+.+. +...+ .+.+..+..+++. +.++.
T Consensus 129 GiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~---~~tt~-e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 129 GIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKP---GTTTY-EFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred hhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCC---CCchH-HHHHHHHHHHHhhheeecc
Confidence 33222211112222222222222222222 3445555544555555422 22222 2345555555444 44667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcc
Q 006102 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (661)
Q Consensus 200 ~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~ 279 (661)
.....++..+-.++.....+.+.+....+... ......+ ...+.|....+.-+-.....+.+|...+.-+.+..+=.
T Consensus 205 p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG--~G~l~~~-~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHG--LGHLFDS-KSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCC--ccccccC-CCcccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 77777777777777776666677766654332 1111100 11222222223333344556666666555444442222
Q ss_pred cCcchHhHHHHHHHHHHHHHHHHHHHhcccC--CCC---CCCCHHHHHHHH-------cCchHHHHHHHHHHHHHHHHHH
Q 006102 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPY--YEM---DPDTPISSAFAS-------HGMHWASYVITIGAVTALCSTL 347 (661)
Q Consensus 280 k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~--~~~---~~~~~~~~a~~~-------~g~~~~~~iv~i~~~~~~~~s~ 347 (661)
|+ |.++..+.+++.-+...++-.+...+.. +.+ +--+|+. ++.+ .|......++..+..++.+++-
T Consensus 282 ks-p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pld-il~~~l~~~y~~G~RAgvFfi~~~f~laql~~N 359 (572)
T KOG2466|consen 282 KS-PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLD-ILNQWLDTNYSAGARAGVFFIGFGFALAQLGTN 359 (572)
T ss_pred CC-CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHH-HHHHHhccccccccchhhhHHHHHHHHHHHhcc
Confidence 21 2333333333222222211111111111 111 2224543 2222 2556777888888888888876
Q ss_pred HhhhchhhHHHHHHHhcCCCccccc
Q 006102 348 MGSILPQPRILMAMARDGLLPPFFS 372 (661)
Q Consensus 348 ~~~~~~~sR~l~ama~dg~lP~~f~ 372 (661)
++.-...+ ++.--+++||++.
T Consensus 360 ISan~vaa----gnDl~~L~Pkyin 380 (572)
T KOG2466|consen 360 ISANSVAA----GNDLSALLPKYIN 380 (572)
T ss_pred hhcccccc----chhhHhhCcceEE
Confidence 55433222 2333478998873
No 97
>PLN00148 potassium transporter; Provisional
Probab=91.98 E-value=30 Score=40.77 Aligned_cols=218 Identities=12% Similarity=0.137 Sum_probs=103.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhHH
Q 006102 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNG 250 (661)
Q Consensus 180 ~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~g 250 (661)
++-.++.++++.+..+.-+|+...++ .+.-+.++=++.+...|++.....+..-. ..+.|. +..|
T Consensus 196 ~vv~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g 269 (785)
T PLN00148 196 ELVLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKII---HALSPYYIIKFFRVTGKDG 269 (785)
T ss_pred eehhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHh---hhcCHHHHHHHHHhCCCce
Confidence 34456777878888888888765544 44555555555555556554333221110 112221 1111
Q ss_pred HHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchH
Q 006102 251 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 330 (661)
Q Consensus 251 i~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~ 330 (661)
+..+..++.+.+|-|+.- |+-=+-.+|.|.+|-..-+.=+.++-=+...+...--|. +..+||... -.+|
T Consensus 270 -~~~LGgV~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~---~~~npFf~~----iP~~ 339 (785)
T PLN00148 270 -WISLGGILLSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIP---SIPNSFYDS----IPDP 339 (785)
T ss_pred -EEeecchheeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCch
Confidence 112345677888988763 333344467777766544433333322333333332221 234555432 2233
Q ss_pred HHHHHHHH-HHHHHHHH--HHhhhchhhHHHHHHHhcCCCccc-ccccccc--cc--CcchHHHHHHHHHHHHHHhcCHH
Q 006102 331 ASYVITIG-AVTALCST--LMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVS 402 (661)
Q Consensus 331 ~~~iv~i~-~~~~~~~s--~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~--~P~~a~l~~~ii~~l~~~~~~~~ 402 (661)
+.+-+.+. .+.++.+| +++..++ +....-+-|.+|+. .-+++++ .+ .|..-.++...+.++...+.+.+
T Consensus 340 ~~~P~~vlAtlAtIIASQA~ISg~FS---i~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~ 416 (785)
T PLN00148 340 VFWPVFVIATLAAIVGSQAVITATFS---IVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTT 416 (785)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccch
Confidence 33322222 22222222 2333333 33344456899942 2233333 12 45444444433444444555777
Q ss_pred HHHHHHHHHHHHHH
Q 006102 403 ALAGMVSVGTLLAF 416 (661)
Q Consensus 403 ~L~~l~s~~~l~~y 416 (661)
.+.+...++....+
T Consensus 417 ~la~AYGiAV~~vM 430 (785)
T PLN00148 417 LIGNAYGLACMTVM 430 (785)
T ss_pred hHHHhhhhheeeHH
Confidence 77777776644433
No 98
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=90.92 E-value=31 Score=40.22 Aligned_cols=225 Identities=17% Similarity=0.138 Sum_probs=105.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhH
Q 006102 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVN 249 (661)
Q Consensus 179 ~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~ 249 (661)
.++-.+++++++.+..+.-+|+...+ ..++-++++=++.+.+.|++.....+..-. ..+.|. |..
T Consensus 166 ~~Vv~it~~ILv~LF~iQ~~GT~kvg---~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl---~AlnP~ya~~f~~~~~~~ 239 (688)
T TIGR00794 166 TWVVPISCIILVLLFLIQRFGTAKVG---FTFAPIILVWLLLLAGIGIYNIVKFNPEVL---KALSPYYAVQFFIEYGTV 239 (688)
T ss_pred CeehhHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHHHH---hHhCHHHHHHHHHHCCCc
Confidence 34445677787888888888865544 455555555555555566654433121100 112221 222
Q ss_pred HHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCch
Q 006102 250 GMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH 329 (661)
Q Consensus 250 gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~ 329 (661)
| +..+..++.+.+|-|+.- |+-=+-.+|.+.++-..-+.-+.++.=+..-+....-|. ...+|+... -.+
T Consensus 240 ~-~~~LG~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~---~~~NpFf~~----~P~ 309 (688)
T TIGR00794 240 G-WVSLGGVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPE---AIKNPFFLS----IPD 309 (688)
T ss_pred e-eeeccchhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcc---hhcCcHHHh----Cch
Confidence 2 112345678888988763 233333467776666533333333322233333332221 124565533 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccc-ccccccc--cc--CcchHHHHHHHHHHHHHHhcCHHHH
Q 006102 330 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSAL 404 (661)
Q Consensus 330 ~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~--~P~~a~l~~~ii~~l~~~~~~~~~L 404 (661)
|+.+.+.+.+.++..-+--+...+.=.+....-+-|.+|+. .-+.+++ .+ .|..-.++...+.++...+.+-+.+
T Consensus 310 ~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~l 389 (688)
T TIGR00794 310 WALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNL 389 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHH
Confidence 44433322222222211111122222333444566899942 2233322 23 4444333333333334445577778
Q ss_pred HHHHHHHHHHHHHHH
Q 006102 405 AGMVSVGTLLAFTMV 419 (661)
Q Consensus 405 ~~l~s~~~l~~y~~v 419 (661)
.+..+++....+.+.
T Consensus 390 a~AYGiaVt~tM~iT 404 (688)
T TIGR00794 390 GAAYGIAVTGTFLVT 404 (688)
T ss_pred HHHhhhhhhhhhHHH
Confidence 877777655544443
No 99
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=90.91 E-value=33 Score=38.85 Aligned_cols=227 Identities=15% Similarity=0.088 Sum_probs=112.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCC---------chh
Q 006102 178 GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFP---------FGV 248 (661)
Q Consensus 178 ~~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p---------~g~ 248 (661)
..++-.+++++++.+..+.-+|+...+++ +.-++++=++.+.+.|++....+ ..-. ..+.| ++.
T Consensus 129 ~~~Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~-p~Vl---~A~nP~yai~f~~~~~~ 201 (534)
T PF02705_consen 129 EPYVVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQH-PEVL---KALNPYYAIRFFIRNGW 201 (534)
T ss_pred cceehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhC-HHHH---HHhCHHHHHHHHHHcCC
Confidence 34445567888888888888887665554 55555555555555565543222 1000 01111 122
Q ss_pred HHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCc
Q 006102 249 NGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGM 328 (661)
Q Consensus 249 ~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~ 328 (661)
.|+ ..+..++.+.+|-|+.-. +-=+-.+|++.++-..-+.-+.++.=+..-+....-|. ...+|+.... .
T Consensus 202 ~~~-~~LG~V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf~~~----P 271 (534)
T PF02705_consen 202 IGF-FVLGAVFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFFLLI----P 271 (534)
T ss_pred chh-hhcchHHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHHHHh----H
Confidence 222 234467888899998743 33333467776666553333333333333333333221 1245555332 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccc-cccccccc--c--CcchHHHHHHHHHHHHHHhcCHHH
Q 006102 329 HWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKTT--Q--VPVKSTIVTGIVAAALAFFMDVSA 403 (661)
Q Consensus 329 ~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~~--~--~P~~a~l~~~ii~~l~~~~~~~~~ 403 (661)
+|+.+.+.+.+.++..-+--+...+.--+..+.-+-|.+|+. ..+.+++. + .|..-.++...+..++..+.+-+.
T Consensus 272 ~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~ 351 (534)
T PF02705_consen 272 EWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSN 351 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHH
Confidence 344433333222222222222222333444555667999952 22333321 2 455444444444444455567888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006102 404 LAGMVSVGTLLAFTMVAI 421 (661)
Q Consensus 404 L~~l~s~~~l~~y~~v~~ 421 (661)
+.+...++....+.++.+
T Consensus 352 la~AYGiAVt~tM~iTT~ 369 (534)
T PF02705_consen 352 LAAAYGIAVTGTMLITTI 369 (534)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777666655443
No 100
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=89.75 E-value=31 Score=39.63 Aligned_cols=220 Identities=16% Similarity=0.122 Sum_probs=102.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhH
Q 006102 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVN 249 (661)
Q Consensus 179 ~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~ 249 (661)
.++-.+++++++.+..+.-+|+...+ ..++-++++=++.+.+.|++.... +..- -..+.|. +..
T Consensus 141 ~~Vvpit~~ILv~LF~iQ~~GT~~vG---~~FgPIm~vWF~~i~~~Gi~~I~~-~P~V---l~AlnP~ya~~f~~~~~~~ 213 (622)
T PRK10745 141 TYIVPLSIIVLTLLFMIQKHGTGMVG---KLFAPIMLTWFLTLAVLGLRSIIA-NPEV---LHALNPMWAVHFFLEYKTV 213 (622)
T ss_pred CccHHHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHhc-CHHH---HhHhCHHHHHHHHHhCCCc
Confidence 34445677787888888888865544 445555555555555556654332 1110 0112221 111
Q ss_pred HHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCch
Q 006102 250 GMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH 329 (661)
Q Consensus 250 gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~ 329 (661)
| +..+..++.+.+|-|+.- |+-=+-.+|.+.++-..-+.=+.++.=+..-+....-| -...+|+... -.+
T Consensus 214 g-f~~LG~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p---~~~~NpFf~~----~P~ 283 (622)
T PRK10745 214 S-FFALGAVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP---EAIKNPFFLL----APD 283 (622)
T ss_pred e-EEEecceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc---hhhcCcHHHh----CCh
Confidence 1 112335677788888763 33334446777777664444333332223333332222 1224566543 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHhcCCCccc-ccccccc--ccC--cchHHHHHHHHHHHHHHhcCH
Q 006102 330 WASYVITIGAVTALCSTLMGS---ILPQPRILMAMARDGLLPPF-FSDVNKT--TQV--PVKSTIVTGIVAAALAFFMDV 401 (661)
Q Consensus 330 ~~~~iv~i~~~~~~~~s~~~~---~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~~--P~~a~l~~~ii~~l~~~~~~~ 401 (661)
|+.+-+.+. +++++++++ ..+.=.+..+.-+-|.+|+. .-+.+++ .+. |..-.++...+..+...+.+-
T Consensus 284 ~~~~p~viL---ATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS 360 (622)
T PRK10745 284 WALIPLLIL---ATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHS 360 (622)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCc
Confidence 443333222 222222222 11222333344566899942 2223322 233 433333333333333444567
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006102 402 SALAGMVSVGTLLAFTM 418 (661)
Q Consensus 402 ~~L~~l~s~~~l~~y~~ 418 (661)
+.+.+...++....+.+
T Consensus 361 ~~La~AYGiAVt~tM~i 377 (622)
T PRK10745 361 SNLAAAYGIAVTGTMVL 377 (622)
T ss_pred hHHHHHhhhhheeHhHH
Confidence 77777777664444433
No 101
>PLN00150 potassium ion transporter family protein; Provisional
Probab=87.86 E-value=64 Score=38.06 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=103.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCc---------hhHH
Q 006102 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNG 250 (661)
Q Consensus 180 ~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~---------g~~g 250 (661)
++-.++.++++.+..+.-+|+...+ ..+.-+.++=++.+.+.|++.....+..-. ..+.|. |..|
T Consensus 213 ~Vv~is~~ILv~LF~iQ~~GT~kVg---~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g 286 (779)
T PLN00150 213 LVTIISCVILVILFSLQRFGTHKVS---FLFAPIFLCWFFSLALIGCYNIIKWDKSVF---LAFNPLYIVSFFIRNGRQG 286 (779)
T ss_pred eehhhHHHHHHHHHHHHhccchhhh---hhhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhcCHHHHHHHHHhCCCce
Confidence 3444677787888888888866544 445555555555555666664433221110 112221 1111
Q ss_pred HHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchH
Q 006102 251 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 330 (661)
Q Consensus 251 i~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~ 330 (661)
+..+..++.+.+|-|+.- |+-=+-.+|.|.+|-..-+.=+.++-=+...+....-|. +..+||... -.+|
T Consensus 287 -~~~LG~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~---~~~npFf~~----iP~~ 356 (779)
T PLN00150 287 -WESLGGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHME---DVNDPFYRS----LPKP 356 (779)
T ss_pred -EEEecceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCch
Confidence 112334577888888763 333344467777766544333333322233333322221 234555432 2334
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhchhhHHHHHHHhcCCCccc-ccccccc--cc--CcchHHHHHHHHHHHHHHhcCHHHH
Q 006102 331 ASYVITIGA-VTALCSTLMGSILPQPRILMAMARDGLLPPF-FSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSAL 404 (661)
Q Consensus 331 ~~~iv~i~~-~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~-f~~~~~~--~~--~P~~a~l~~~ii~~l~~~~~~~~~L 404 (661)
+.+-+.+.+ +.++.+| -+.+.+.-.+....-+-|.+|+. .-+.+++ .+ .|..-.++...+.++...+.+.+.+
T Consensus 357 ~~~P~~vlAtlAtIIAS-QA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l 435 (779)
T PLN00150 357 IYWPIFVLATCSAMIAS-QAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEI 435 (779)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHH
Confidence 433332222 2222222 12222222333444556899942 2233332 13 4444444433333344445577778
Q ss_pred HHHHHHHHHHHHH
Q 006102 405 AGMVSVGTLLAFT 417 (661)
Q Consensus 405 ~~l~s~~~l~~y~ 417 (661)
.+...++....++
T Consensus 436 ~~AYGiAV~~vM~ 448 (779)
T PLN00150 436 GNAYGIAVVGVMI 448 (779)
T ss_pred HHHhhhheehhhH
Confidence 8777766544433
No 102
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=87.10 E-value=66 Score=37.36 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHH----HHHHHHHHHHHHHHHHHhcc
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSF----LIAGIASAFSAFCYAELASR 109 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~----ll~~l~~l~~al~~aElas~ 109 (661)
+..|.++-.+|..+|.|-...-...+.+++|.+-++-+ ++.|+-.+..-++...+.++
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~ 100 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ 100 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC
Confidence 78999999999999999999888888888886544333 33445555566666666665
No 103
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=86.26 E-value=56 Score=35.69 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=31.5
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 006102 319 ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (661)
Q Consensus 319 ~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (661)
..+.++..-+++..+++.++.+.+-.++.++..++..-+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566677788999999999999999988887765544433
No 104
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=83.56 E-value=2.2 Score=44.70 Aligned_cols=210 Identities=11% Similarity=0.089 Sum_probs=113.7
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH----HHHhccCC--CCccHHHHH
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCY----AELASRCP--SAGSAYHYS 120 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~----aElas~~P--~~Gg~y~y~ 120 (661)
-+.+++.++...=...++=| +|...-.+|..++|.+.+.+.+..+.+|.-++-.. .|=...-. +---.|.-+
T Consensus 113 ~~~kI~a~qAaWNVTNAIQG--MFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQG--MFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCccHHHHHhhhhhhhhhe--eeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 44678999887666666544 44433335667788887777776666665444333 33221000 001234444
Q ss_pred HHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ChhhHhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 006102 121 YIC-VGEGVA-WLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (661)
Q Consensus 121 ~~~-~G~~~g-fi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~ 197 (661)
... ++|..| ..+--..+.+.+..+..+....++.+..-+.+.. ....|+ +++-+. ++..--.
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm-------------~i~~a~--LLpc~FL 255 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWM-------------MITSAS--LLPCSFL 255 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchh-------------hhhhHH--HhhhHHH
Confidence 444 666655 6666678888888777777666666655443211 001111 112222 2333335
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCC--CCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhh
Q 006102 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP--TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (661)
Q Consensus 198 ~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~--~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~ 275 (661)
...|..+++..+.++..+++-++++.-.+.....-.|+..... -.-.|. .+.+++|+|..---..++-+.+
T Consensus 256 k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPi-------svG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 256 KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPI-------SVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCce-------EEEEEEEeeeceeecccccccc
Confidence 6788888888888888888777666665554322223211000 001121 1224456666666666777777
Q ss_pred cCccc
Q 006102 276 KNPQR 280 (661)
Q Consensus 276 knP~k 280 (661)
|||.+
T Consensus 329 ~~ps~ 333 (524)
T KOG4303|consen 329 KNPSQ 333 (524)
T ss_pred CChhH
Confidence 77653
No 105
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=83.31 E-value=70 Score=34.37 Aligned_cols=278 Identities=13% Similarity=0.131 Sum_probs=134.0
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhccCCC------CccHHHHH
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPS------AGSAYHYS 120 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~-~al~~aElas~~P~------~Gg~y~y~ 120 (661)
.|+++.+-+.+.-.++=+++..|..-+..++.++ ++|++-+.+..+ +-+.+.-++.++.+ +=-...+.
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~G-----lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYG-----LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhc-----hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHH
Confidence 4677776665444444455444432222222211 234443333333 33344444444332 11233444
Q ss_pred HHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHH--HHHHHHH
Q 006102 121 YIC-VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVL--IVTGLLC 197 (661)
Q Consensus 121 ~~~-~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~--~~~~i~~ 197 (661)
+.- -+++..|+++..+++.......+.-.+.+..+....+- +.. .++++.. +...-..
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi----dY~---------------tgL~ifa~~V~iYt~f 173 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI----DYT---------------TGLLIFAVSVAIYTAF 173 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC----Cch---------------hhHHHHHHHHHHHHhh
Confidence 333 57788999999999888888887777777777666541 110 0111111 1111223
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--------ccCCCCCCCCCCCCCchhHH-HHHHHHHHHHHhhhhhHH
Q 006102 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF--------KTGWSGYELPTGYFPFGVNG-MLAGSATVFFAFIGFDAV 268 (661)
Q Consensus 198 ~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~--------~~~~~~~~~~~~~~p~g~~g-i~~~~~~~~faf~G~e~i 268 (661)
-|-|.+..--.+=..++++...++.+....... .++.++ +-..|.|... .-..+...+|-..|+...
T Consensus 174 GGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp----~lv~P~~~~~~l~~~Fm~Sfwilv~~gvl 249 (473)
T COG4145 174 GGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDP----GLVTPQGADDILDPPFMASFWILVCFGVL 249 (473)
T ss_pred cceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCc----cccCCCCCcccccchHHHHHHHHHHHHHh
Confidence 344544443344444444433333222222110 011111 1111221111 111223345555555444
Q ss_pred -----hcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHH---hcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHH
Q 006102 269 -----ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV---GLVPYYEMDPDTPISSAFASHGMHWASYVITIGAV 340 (661)
Q Consensus 269 -----a~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~---~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~ 340 (661)
+.---..|| +|.+.++++++..++.++-+.+-.+-. .++|.-+ .+|.-+....-+...|...-++-.+.+
T Consensus 250 glP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt-~~D~Vip~lalkvlpp~~agifl~apm 327 (473)
T COG4145 250 GLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT-VVDLVIPTLALKVLPPFAAGIFLAAPM 327 (473)
T ss_pred cCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC-ccchhHHHHHHHhcchHHHHHHHHHHH
Confidence 222334466 588999999998888877666554421 2233222 233344455555666666667777777
Q ss_pred HHHHHHHHhhhchhh
Q 006102 341 TALCSTLMGSILPQP 355 (661)
Q Consensus 341 ~~~~~s~~~~~~~~s 355 (661)
.+..++.++.+.-.+
T Consensus 328 aAiMSTIds~L~~~s 342 (473)
T COG4145 328 AAIMSTINSQLLQSS 342 (473)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777665444
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=81.79 E-value=1.1e+02 Score=35.70 Aligned_cols=101 Identities=12% Similarity=-0.045 Sum_probs=51.8
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHh
Q 006102 319 ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (661)
Q Consensus 319 ~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~ 398 (661)
+...+++. .+..++.+.+++.++....++.-+++-++-.++.+|.-++. ++....-..=-++.+++++.+...
T Consensus 398 lf~~l~~l---P~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~----~pp~~~RifW~v~ig~la~~LL~~ 470 (679)
T PRK09928 398 FYSLLAQY---PAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS----DAPNWLRVFWSVAIGLLTLGMLMT 470 (679)
T ss_pred HHHHHHhC---cHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC----CCCcceeeHHHHHHHHHHHHHHHh
Confidence 34444444 24456666666666667777778888888888776643311 111111112222344455555555
Q ss_pred cCHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 006102 399 MDVSALAGMVS---VGTLLAFTMVAISVLIL 426 (661)
Q Consensus 399 ~~~~~L~~l~s---~~~l~~y~~v~~~~i~l 426 (661)
+.++.+-++.. +...+...+++.++++-
T Consensus 471 GGL~aLQt~sii~alPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 471 NGISALQNTTVIMGLPFSFVIFFVMAGLYKS 501 (679)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655444443 33444444555555543
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=81.57 E-value=99 Score=34.88 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHH
Q 006102 323 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVS 402 (661)
Q Consensus 323 ~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~ 402 (661)
++....-.+..+..+.+++.+..-..++..+.+-++-.++..| +.++....-+.--+..+++++.+.....++
T Consensus 395 f~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~-------~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~ 467 (537)
T COG1292 395 FQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG-------GEDPPRWVRVFWGVLIGLIAAVLLLIGGLE 467 (537)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC-------CCCChHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3333333455666666666666677788888898988888766 222221222222334455555555566655
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhhcc
Q 006102 403 ALAGMVS---VGTLLAFTMVAISVLILRYV 429 (661)
Q Consensus 403 ~L~~l~s---~~~l~~y~~v~~~~i~lR~~ 429 (661)
.+-+..- +...+..++++.++++--++
T Consensus 468 aLqt~~ii~alPF~~vll~~~~sl~k~l~~ 497 (537)
T COG1292 468 ALQTAAIITALPFSLVLLVMMFSLIKDLKQ 497 (537)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 5544433 33334444555555554433
No 108
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=81.06 E-value=76 Score=36.12 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCC
Q 006102 401 VSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVP 435 (661)
Q Consensus 401 ~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~-~~p 435 (661)
+..+..+..+-.++..-++.++-+.=+|+.+. +.|
T Consensus 366 f~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p 401 (521)
T PF02990_consen 366 FGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFP 401 (521)
T ss_pred hHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCC
Confidence 44555555555555555666666665544433 444
No 109
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=79.89 E-value=55 Score=37.27 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCC-chhHHHHHHHHH
Q 006102 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFP-FGVNGMLAGSAT 257 (661)
Q Consensus 179 ~~~~~~a~~ii~~~~~i~~~G~k~~~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p-~g~~gi~~~~~~ 257 (661)
+...++.+++.+++.+..+.|+|.++++..+.+.+-.+++.++.+-++......+...+-....+.. ...+....++..
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtq 331 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQ 331 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHH
Confidence 3445566677777888899999999998777776666555555565553222211111000000100 123445566666
Q ss_pred HHHHh-hhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHHHHHH
Q 006102 258 VFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV 305 (661)
Q Consensus 258 ~~faf-~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~~~l~ 305 (661)
++|+. .|+.....+|.-.|- +.|.-|=.++.-++-.+.+++..++..
T Consensus 332 iffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviF 379 (629)
T KOG3659|consen 332 IFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIF 379 (629)
T ss_pred HHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66664 788888888776654 334444333444444444544444443
No 110
>PTZ00206 amino acid transporter; Provisional
Probab=70.86 E-value=48 Score=37.09 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCcccc
Q 006102 316 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFF 371 (661)
Q Consensus 316 ~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f 371 (661)
...+.+..+...++++.+++.+..++..+++..+++......+...-++...|+++
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~ 175 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34677777777789999999999999999999999888888776655443344444
No 111
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=66.43 E-value=1.9e+02 Score=31.14 Aligned_cols=100 Identities=15% Similarity=0.017 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cHHHHHHHHhchhH
Q 006102 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAG-SAYHYSYICVGEGV 128 (661)
Q Consensus 51 L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~G-g~y~y~~~~~G~~~ 128 (661)
.+.+-+...-+.++.|.|..+.+... ..-|+. .++..++++++.-.+ -=|..+-....+.| +.-.-+++.+|+..
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~a--a~~GwlPa~lWI~~G~if~GaV-HD~~sl~~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILA--AQFGWLPALLWIVFGCIFAGAV-HDYGSLMASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHH--HHhcchHHHHHHHHccHHHHHH-HHHHHHhhhhcCCCccHHHHHHHHHHHHH
Confidence 45667777888889999988876543 345776 444344454443332 22333333344444 67777888899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006102 129 AWLIGWALILEYTIGGSAVARGISP 153 (661)
Q Consensus 129 gfi~gw~~~l~~~~~~aa~a~~~~~ 153 (661)
+.+..+..++..++..+.-+...+.
T Consensus 129 ~~lf~~f~~~~lilV~avF~~v~a~ 153 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFADVVAN 153 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777666655555444333
No 112
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=64.48 E-value=2.4e+02 Score=31.49 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=28.0
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcC
Q 006102 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (661)
Q Consensus 318 ~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg 365 (661)
.+.+.+++.. +..++....++.++....+...+.+-.+-.++.++
T Consensus 344 a~~~~l~~lP---~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~ 388 (453)
T TIGR00842 344 ALFGLLQALP---LGTITSALALIVIIIFFITSADSGALVLANTSSRG 388 (453)
T ss_pred HHHHHHHHCc---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3344444442 44566666666666777777778888887775543
No 113
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=63.63 E-value=2.6e+02 Score=31.64 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=52.2
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHH
Q 006102 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (661)
Q Consensus 318 ~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~ 397 (661)
.+.+.+++.. +..++.+..++.++....++..+.+-.+-.++.+|.=++ .||....-..=-+..++++..+..
T Consensus 393 alf~~l~~lP---l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~~~~ri~W~v~ig~ia~~Ll~ 465 (504)
T PRK03356 393 AIIETWAALP---LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPPLLVRIGWSILVGIIGIVLLA 465 (504)
T ss_pred HHHHHHHHCc---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCCcchhhHHHHHHHHHHHHHHH
Confidence 4444555542 445666666666677777888888888888887764221 122211111112233444444444
Q ss_pred hcCHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 006102 398 FMDVSALAGMV---SVGTLLAFTMVAISVLIL 426 (661)
Q Consensus 398 ~~~~~~L~~l~---s~~~l~~y~~v~~~~i~l 426 (661)
...++.+-++. ++...+...+.+.+.++-
T Consensus 466 ~GGl~~lQt~sii~alPf~~i~~l~~~sl~k~ 497 (504)
T PRK03356 466 LGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKD 497 (504)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444433 333444444445555443
No 114
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=49.51 E-value=5.3 Score=40.51 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHH--HHHHHHHhh
Q 006102 587 YLLINLGSATWARVSVWLI--IGVLVYVFY 614 (661)
Q Consensus 587 ~lm~~l~~~t~~~~~vw~~--ig~~iY~~y 614 (661)
-++.++.|.|.+.=+-|+. ++++|+.+|
T Consensus 156 Av~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 156 AVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456676767666666754 456666544
No 115
>PRK15015 carbon starvation protein A; Provisional
Probab=38.76 E-value=7e+02 Score=29.19 Aligned_cols=99 Identities=17% Similarity=0.053 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cHHHHHHHHhchhHHHHH
Q 006102 54 PHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAG-SAYHYSYICVGEGVAWLI 132 (661)
Q Consensus 54 ~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~G-g~y~y~~~~~G~~~gfi~ 132 (661)
+-+..-=+.++-|+|..+.+...+ .-|..--+.|++.|.+..-..-=|.-+-....+.| +.-.-+++-+|+..+.+.
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa--~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAA--QMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHH--HHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 445566678889999988776533 34644222244444333333333333334444444 777888999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006102 133 GWALILEYTIGGSAVARGISPN 154 (661)
Q Consensus 133 gw~~~l~~~~~~aa~a~~~~~~ 154 (661)
....++.-++..+..+...+..
T Consensus 164 li~i~~iliiviAvfalvvv~a 185 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKA 185 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666555555544443
No 116
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=3.6e+02 Score=30.68 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhcCCHH-----HHH-HHHHHHHHHHHH
Q 006102 577 LPIACILINVYLLINLGSA-----TWA-RVSVWLIIGVLV 610 (661)
Q Consensus 577 ~P~~si~~n~~lm~~l~~~-----t~~-~~~vw~~ig~~i 610 (661)
+=.+..+.|.++..+-++. |++ ....|.++.+..
T Consensus 410 vf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPL 449 (628)
T KOG1278|consen 410 VFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPL 449 (628)
T ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhH
Confidence 4456677898888876554 444 345688777655
No 117
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=28.93 E-value=5.8e+02 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.618 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchhHHH
Q 006102 93 GIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (661)
Q Consensus 93 ~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~~gf 130 (661)
+++++..++.|+ ||.+.+.++.+||...+
T Consensus 112 g~~g~~~~~~Yt---------~gP~~l~y~gLGE~~v~ 140 (285)
T TIGR02235 112 VGLCCFLGYLYQ---------GPPFRLGYQGLGEPICW 140 (285)
T ss_pred HHHHHHHHHhhc---------CCCcccCCCCccHHHHH
Confidence 334555555553 46666778888886433
No 118
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.29 E-value=1.8e+02 Score=25.15 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=22.4
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHh-c-cChHHHHHHHHHHHHHH
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVARE-H-SGPALALSFLIAGIASA 97 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~-~-aGp~~il~~ll~~l~~l 97 (661)
+-|.++....+.+.+...+=.|+|. |.-.-. . .+|...+.+++.|++.-
T Consensus 38 ~~~~l~~~g~IG~~~v~pil~G~~l--G~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 38 IWEGLGMFGLIGWSVAIPTLLGVAV--GIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 4455666555555544433333333 222212 2 24555555666555433
No 119
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=27.31 E-value=7.8e+02 Score=26.24 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCCC
Q 006102 288 TALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLL 367 (661)
Q Consensus 288 ~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~l 367 (661)
.+++++++++.+....+.-.-..-+.. ...+..+..-+++.+.+..+..+..++++......+++-.+-++
T Consensus 40 ~gIivs~vlf~~~g~vim~ig~~f~a~---~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~------ 110 (349)
T COG3949 40 LGIILSTVLFTLSGAVIMTIGKKFNAT---SYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM------ 110 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH------
Confidence 445566666666665544332222222 23445667778999999999999999999888777666555443
Q ss_pred ccccccccccccCcchHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006102 368 PPFFSDVNKTTQVPVKST-IVTGIVAAALAFFMDVSALAGMVSVGTLL 414 (661)
Q Consensus 368 P~~f~~~~~~~~~P~~a~-l~~~ii~~l~~~~~~~~~L~~l~s~~~l~ 414 (661)
+|.|..-= ++...+..+..+..+++.+..+.++-+-+
T Consensus 111 ----------~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 111 ----------FGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred ----------hCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 46666522 22223333333444566666666554433
No 120
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=25.99 E-value=73 Score=32.01 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcccchhhc
Q 006102 576 LLPIACILINVYLLINLGSATWARVSVWLIIGVLVYVFYGRTHSSLLDAVYVPAAHVDEIYR 637 (661)
Q Consensus 576 ~~P~~si~~n~~lm~~l~~~t~~~~~vw~~ig~~iY~~yg~~hs~~~~~~~~~~~~~~~~~~ 637 (661)
+++.++|++--......+-..|..|+.+.++-.++=+.-++|+.+.+.+..++......+|+
T Consensus 5 lisq~~il~fa~Vla~~p~y~~~~filYfiv~~~i~~~~~~Rs~rr~~~~~~Ei~~g~~L~e 66 (233)
T PF09973_consen 5 LISQVSILLFAAVLAFFPQYYFEVFILYFIVFFGIMIVMGIRSYRRGRKPRSEISKGRPLFE 66 (233)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccHHHHhcCCcccc
Confidence 35566666666666667777788888877776666666777777744444444444444555
No 121
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=25.58 E-value=2.2e+02 Score=24.83 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=35.9
Q ss_pred CccccccchhHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHHHHH
Q 006102 568 GFMCPFVPLLPIACILINVYLLINLGSATW---ARVSVWLIIGVLVYV 612 (661)
Q Consensus 568 ~f~~P~~P~~P~~si~~n~~lm~~l~~~t~---~~~~vw~~ig~~iY~ 612 (661)
-|-.=++|+.|.++++.--....+.+..+. +.|++|.++...+|.
T Consensus 22 ~yiaGLvPLFPTFALIahyiVg~er~~~~lr~T~lFgi~siipy~~yL 69 (107)
T PF06942_consen 22 YYIAGLVPLFPTFALIAHYIVGSERGMEALRTTALFGIWSIIPYAAYL 69 (107)
T ss_pred hHHhhHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 355557999999998888888888877764 778999998888874
No 122
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=24.30 E-value=6e+02 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=11.9
Q ss_pred ccHHHHHHHHhchhHH
Q 006102 114 GSAYHYSYICVGEGVA 129 (661)
Q Consensus 114 Gg~y~y~~~~~G~~~g 129 (661)
||.+.+.|+.+||...
T Consensus 137 ~gP~~l~y~gLGE~~v 152 (304)
T PRK07419 137 GPPFRLGYQGLGEPLC 152 (304)
T ss_pred CCCcccCCCCchHHHH
Confidence 5667778888998753
No 123
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=24.18 E-value=8.9e+02 Score=26.55 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=56.9
Q ss_pred cccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCC-CCCC-CHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhh
Q 006102 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE-MDPD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (661)
Q Consensus 278 P~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~-~~~~-~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (661)
|-..-..+...+++...+.+.+.........--.+ .+.+ +.+....++.-++.+++++.+...+.+++...++.....
T Consensus 31 P~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g 110 (415)
T COG0814 31 PVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIG 110 (415)
T ss_pred hHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 43333456666666666666666655544433222 2223 477888888888999999999999999999988887777
Q ss_pred HHHHHH
Q 006102 356 RILMAM 361 (661)
Q Consensus 356 R~l~am 361 (661)
-.+-+.
T Consensus 111 ~~l~~~ 116 (415)
T COG0814 111 NLLASF 116 (415)
T ss_pred hHHHHH
Confidence 766553
No 124
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=23.03 E-value=8.9e+02 Score=25.42 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
++++++...+.+++....|.-.. +.......+ ++ ++.-|++|+..+..| +||.+-|.|..+||.
T Consensus 89 ~~~~k~~~~l~l~l~~~~g~~ll---g~~~~~~s~---~~-~l~lG~l~~~~g~~Y---------TgGp~PlgY~gLGEi 152 (303)
T COG1575 89 RQSMKPALILSLALFLLAGLALL---GVILAALSD---WL-VLLLGLLCIAAGILY---------TGGPFPLGYMGLGEI 152 (303)
T ss_pred cccCCHHHHHHHHHHHHHHHHHH---HHHHHHHhh---hH-HHHHHHHHHHheeee---------ccCCcCcccCCHHHH
Confidence 45677766666666544333111 111111122 22 344455555555544 589999999999997
Q ss_pred H-HHHHHHHH
Q 006102 128 V-AWLIGWAL 136 (661)
Q Consensus 128 ~-gfi~gw~~ 136 (661)
. +...|+..
T Consensus 153 ~~~vffG~l~ 162 (303)
T COG1575 153 FVGVFFGPLI 162 (303)
T ss_pred HHHHHHHHHH
Confidence 4 44555543
No 125
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=22.22 E-value=1.1e+03 Score=26.12 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=55.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHH
Q 006102 117 YHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL 196 (661)
Q Consensus 117 y~y~~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~ 196 (661)
-..++..+|+.-..+.+-...+.+..++.....++++|++..++ ..+.. .+..++.++...+.
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kisY~----------------~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KISYK----------------VWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChH----------------HHHHHHHHHHHHHH
Confidence 34566779999999999999999999988999999999998875 22111 13566667777888
Q ss_pred HHhhHHHHHHH
Q 006102 197 CVGIKESTIAQ 207 (661)
Q Consensus 197 ~~G~k~~~~~~ 207 (661)
..|.+..-++.
T Consensus 327 n~Gl~~Ii~~s 337 (427)
T PF05525_consen 327 NLGLDQIIKIS 337 (427)
T ss_pred HhCHHHHHHHH
Confidence 88876544443
No 126
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=21.92 E-value=2e+02 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.8
Q ss_pred cchhhhcCcc-cCcchHhHHHHHHHHHHHHHHHH
Q 006102 270 STAEEVKNPQ-RDLPLGIGTALSICCALYMLVSI 302 (661)
Q Consensus 270 ~~a~E~knP~-k~iP~aii~s~~i~~v~Yil~~~ 302 (661)
---|-.+||| |.+||+++.+++...++-+....
T Consensus 202 GTIEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 202 GTIEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred ceeecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3457789998 99999999998877666554433
No 127
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.45 E-value=1.3e+03 Score=26.55 Aligned_cols=32 Identities=6% Similarity=0.001 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006102 400 DVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (661)
Q Consensus 400 ~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~ 431 (661)
++..+..+..+-..++--++.++.+.-.++++
T Consensus 431 PF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~ 462 (628)
T KOG1278|consen 431 PFSTMVALLFLWFGISVPLSFVGGYFGFKKPA 462 (628)
T ss_pred cHHHHHHHHHHHHHhhhhHHHhhHHhhccCCC
Confidence 46666666666666665566666555544443
No 128
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=21.19 E-value=1.1e+02 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=24.3
Q ss_pred hhhhcCcc-cCcchHhHHHHHHHHHHHHHHHHH
Q 006102 272 AEEVKNPQ-RDLPLGIGTALSICCALYMLVSIV 303 (661)
Q Consensus 272 a~E~knP~-k~iP~aii~s~~i~~v~Yil~~~~ 303 (661)
-|-.+||| |.+||+++.+++...+.-++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 47789998 899999999988776665554443
No 129
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=20.64 E-value=1.2e+03 Score=25.87 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhhHHhcchhhhcCcccCcchHhHHHHHHH----HHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHc
Q 006102 252 LAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSIC----CALYMLVSIVIVGLVPYYEM-DPDTPISSAFASH 326 (661)
Q Consensus 252 ~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~aii~s~~i~----~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~ 326 (661)
++++..+.-+-.|.-.++.++.-++.-. |=|+++.-+.. ...|.-..+....-...++- -...|....-+..
T Consensus 50 fqA~~~ala~~VG~GnI~Gva~Ai~~GG---pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl 126 (425)
T TIGR00835 50 FQALFTSLAARVGIGNIVGVATAIAIGG---PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGL 126 (425)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHh
Confidence 4455555666677765555554444322 55644433322 33344444433332111111 1235777777777
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHh
Q 006102 327 GMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (661)
Q Consensus 327 g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~ 363 (661)
+++|++.++++. ++..++.. ...++|.....-+
T Consensus 127 ~~k~lg~lfa~~-~i~~f~~~---~~~Q~nsi~~~~~ 159 (425)
T TIGR00835 127 GMRWLAVLFAVF-LIASFGIG---NMVQANAIASALS 159 (425)
T ss_pred CccHHHHHHHHH-HHHHHhhh---HHHHHHHHHHHHH
Confidence 889988887777 44433322 3355666655544
No 130
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.57 E-value=6.7e+02 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 006102 535 TLCGIGGALLLCGLIVLTS 553 (661)
Q Consensus 535 ~~~~~~~~l~~~~~~~~~~ 553 (661)
.++.++..+.+.+++-+.+
T Consensus 110 Wl~~iG~~~~i~~~~G~vf 128 (137)
T PF12270_consen 110 WLILIGAVLLIVAVVGWVF 128 (137)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555555555555554444
No 131
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=20.50 E-value=1.7e+02 Score=19.08 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc
Q 006102 592 LGSATWARVSVWLIIGVLVYVFYGR 616 (661)
Q Consensus 592 l~~~t~~~~~vw~~ig~~iY~~yg~ 616 (661)
+++..|+... +.+|+.+|+.|..
T Consensus 1 M~~~~wls~a--~a~~Lf~YLv~AL 23 (29)
T PRK14740 1 MTVLDWLSLA--LATGLFVYLLVAL 23 (29)
T ss_pred CcHHHHHHHH--HHHHHHHHHHHHH
Confidence 3556676654 5789999988864
No 132
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.37 E-value=1.5e+02 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHH--hhcccccccccccccC
Q 006102 573 FVPLLPIACILINVYLLINLGS-ATWARVSVWLIIGVLVYV--FYGRTHSSLLDAVYVP 628 (661)
Q Consensus 573 ~~P~~P~~si~~n~~lm~~l~~-~t~~~~~vw~~ig~~iY~--~yg~~hs~~~~~~~~~ 628 (661)
++-++|++.+++...|--.+.. ..|..+++.+..++.+++ .|.+||. .+..+||
T Consensus 80 LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~--~~~~~Qp 136 (150)
T COG3086 80 LVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLA--KRTEWQP 136 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccCCC
Confidence 5668899999988888544433 346666666555544443 4554444 3444444
Done!