Query 006102
Match_columns 661
No_of_seqs 251 out of 2523
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.4E-52 4.8E-57 462.4 44.2 421 46-620 5-433 (445)
2 3gia_A Uncharacterized protein 100.0 2.4E-49 8.1E-54 436.6 42.7 365 47-432 4-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.9E-46 6.4E-51 420.9 40.1 372 44-432 6-398 (511)
4 2jln_A MHP1; hydantoin, transp 99.2 5.9E-08 2E-12 107.7 35.8 317 48-404 24-359 (501)
5 2xq2_A Sodium/glucose cotransp 98.6 0.00027 9.2E-09 79.9 38.2 289 48-358 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.3 0.0032 1.1E-07 70.0 37.1 287 48-358 19-348 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.5 0.03 1E-06 61.6 27.0 245 52-299 10-292 (519)
8 4ain_A Glycine betaine transpo 64.8 1.6E+02 0.0056 32.0 17.0 44 319-365 400-443 (539)
9 2wsw_A BCCT family betaine/car 39.4 3.9E+02 0.013 28.7 30.4 35 332-366 409-443 (509)
10 3mk7_C Cytochrome C oxidase, C 10.4 6.3E+02 0.022 24.8 7.9 16 559-574 40-55 (311)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.4e-52 Score=462.36 Aligned_cols=421 Identities=20% Similarity=0.274 Sum_probs=360.1
Q ss_pred ccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhc
Q 006102 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (661)
Q Consensus 46 ~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G 125 (661)
+.+|++++++++++++|+++|+|+|..++.++ .+||..+++|+++++.+++.+++|+|+++++|++||.|.|+++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 47899999999999999999999999998754 3689999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 126 ~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
|.+||+.||.+++.+....++.+.+.+++++.+++... .++...+++++++++++.+|.+|+|..++
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------------DPWVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------------SHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------------ccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999999888888888777764432100 01112346788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a 285 (661)
++.+.+.++++.++++++.++.+.+.+++.+..++.+ ..++.+++.++..++|+|.|+|.+++++||+|||+|++||+
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a 227 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHH
Confidence 9999999999999988888877655444422111111 11366789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCC-CCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhc
Q 006102 286 IGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (661)
Q Consensus 286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~-~~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d 364 (661)
++.+..+++++|++.+++..+..|+++. +.++|+.+++++.++++...++.++++++.+++.++.+++.+|++++||||
T Consensus 228 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998886 456799999999989999999999999999999999999999999999999
Q ss_pred CCCccccccccccccCcchHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 006102 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-------MDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVP 437 (661)
Q Consensus 365 g~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~-------~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~~~p~~ 437 (661)
|.+|++|+|+||+ ++|.++++++++++.++.+. ..++.+.++.+++.++.|.+.+++++++|+|+| + |
T Consensus 308 g~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~-~-- 382 (445)
T 3l1l_A 308 GLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G-K-- 382 (445)
T ss_dssp TSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G-G--
T ss_pred CCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c-c--
Confidence 9999999999976 99999999999988776654 236789999999999999999999999998665 1 0
Q ss_pred CCccccccchhhhcccccccccCCCcccccCcccccchhhhhcCCccccccccccccccccccccchhhhhHHHHHHHHH
Q 006102 438 STLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVF 517 (661)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (661)
T Consensus 383 -------------------------------------------------------------------------------- 382 (445)
T 3l1l_A 383 -------------------------------------------------------------------------------- 382 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhccchhhhHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHH
Q 006102 518 VLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPLLPIACILINVYLLINLGSATW 597 (661)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~f~~P~~P~~P~~si~~n~~lm~~l~~~t~ 597 (661)
|.|..|++|.++.+.+++++...++.++
T Consensus 383 ----------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
T 3l1l_A 383 ----------------------------------------------------ARPAYLAVTTIAFLYCIWAVVGSGAKEV 410 (445)
T ss_dssp ----------------------------------------------------GCTTTHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ----------------------------------------------------ccchhHHHHHHHHHHHHHHHHHcCHHHH
Confidence 2356788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 006102 598 ARVSVWLIIGVLVYVFYGRTHSS 620 (661)
Q Consensus 598 ~~~~vw~~ig~~iY~~yg~~hs~ 620 (661)
....+|+++|+++|+.+.+|+.+
T Consensus 411 ~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 411 MWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999987766554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=2.4e-49 Score=436.63 Aligned_cols=365 Identities=22% Similarity=0.342 Sum_probs=326.5
Q ss_pred cccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 47 l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
.||+++++|++++++|.++|+|+|..++..+ ..+||+.+++|+++++++++.+++|+|+++++|++||.|.|+++.+|+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 5789999999999999999999999988754 568999999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 127 GV-AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 127 ~~-gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
.+ +...+|.++++|....+..+.++++++..+++... .+ +...+++.+++++++.+|.+|+|.+++
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI-NT------------FNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CH------------HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ch------------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 63 44568999999999999999999999987764211 11 122346788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHhcchhhhcCcccCcchH
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~~faf~G~e~ia~~a~E~knP~k~iP~a 285 (661)
++.+.+.++++.++++++.++...+.+|+.+ .+.|.|+.+++.++..++|+|.|+|.+++++||+|||+|++||+
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~a 224 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIP-----DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRA 224 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC-----CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCC-----CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHH
Confidence 9999999999999999988888766655542 25567888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHh
Q 006102 286 IGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (661)
Q Consensus 286 ii~s~~i~~v~Yil~~~~l~~~vp~~~~~--~~~~~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~ 363 (661)
++.++.+++++|++.+++..+..|++++. .+.|+.++++...+++...++.++++++.+++.++.+++.+|++++|||
T Consensus 225 i~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 225 IFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753 3568888888888889999999999999999999999999999999999
Q ss_pred cCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006102 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (661)
Q Consensus 364 dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L~~l~s~~~l~~y~~v~~~~i~lR~~~~~ 432 (661)
||.+|++|+|+|+ ++|.++++++++++.++.++.+++.+.++.+++.++.|.+++++++++|+++|+
T Consensus 305 dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 305 DGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp HSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999985 569999999999999999899999999999999999999999999999987654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.9e-46 Score=420.88 Aligned_cols=372 Identities=20% Similarity=0.248 Sum_probs=286.3
Q ss_pred ccccccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhc--cCCCCccHHHHH
Q 006102 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELAS--RCPSAGSAYHYS 120 (661)
Q Consensus 44 ~~~l~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~~l~~-l~~al~~aElas--~~P~~Gg~y~y~ 120 (661)
+++++|+++++++++++++.++|. +..+. ...+||+.++.+++++++. ++.+++|+|+++ ++| +||.|.|+
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMAV--YEYPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCCG--GGHHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHhh--chhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 346899999999999999999874 33333 2458999888888877765 569999999999 999 99999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 006102 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (661)
Q Consensus 121 ~~~~G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~ 200 (661)
++.+||.+||++||.+++++....++.....+.+++.+++ .|.. +...+...+++++++++++++|++|+
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~------~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPAL------NEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGGG------TSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cccc------ccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999888888777777654421 1221 11123334567888889999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhcccccCCCCC-CCCCCCCCc-hhHHHHHHHHHHHHHhhhhhHHhcchhhhcC
Q 006102 201 KESTIAQAIVTTANVL-AMLFVIIAGSYLGFKTGWSGY-ELPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (661)
Q Consensus 201 k~~~~~~~i~~~~~l~-~ll~iii~g~~~~~~~~~~~~-~~~~~~~p~-g~~gi~~~~~~~~faf~G~e~ia~~a~E~kn 277 (661)
|.+++++.+.+.++++ .++++++.++.....++.... .+.+++.|. ...+.+.++..++|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 9999999999888654 455566666543322211100 011222232 1123455677889999999999999999999
Q ss_pred cccCcchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHH----HHHHcC--chHHHHHHHHHHHHHHHHHHHhhh
Q 006102 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS----AFASHG--MHWASYVITIGAVTALCSTLMGSI 351 (661)
Q Consensus 278 P~k~iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~----a~~~~g--~~~~~~iv~i~~~~~~~~s~~~~~ 351 (661)
|+|++|||++.++.+++++|++..+++...+|+++....++..+ +++..| .++...++.+.++++.+++.++.+
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765554443 344456 688899999999999999999999
Q ss_pred chhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHH-HHHhcC--------HHHHHHHHHHHHHHHHHHHHHH
Q 006102 352 LPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAA-LAFFMD--------VSALAGMVSVGTLLAFTMVAIS 422 (661)
Q Consensus 352 ~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l-~~~~~~--------~~~L~~l~s~~~l~~y~~v~~~ 422 (661)
++.+|++++|||||.+|++|+|+||+ ++|.+|++++.++..+ +..+.+ ++.+.++.+++.++.|.+.+++
T Consensus 310 ~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp THHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 9999999998544333 333344 6789999999999999999999
Q ss_pred HHHhhccCCC
Q 006102 423 VLILRYVPPD 432 (661)
Q Consensus 423 ~i~lR~~~~~ 432 (661)
++++|+++|+
T Consensus 389 ~~~~r~~~~~ 398 (511)
T 4djk_A 389 YIVLVLKHPD 398 (511)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999988765
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.18 E-value=5.9e-08 Score=107.69 Aligned_cols=317 Identities=10% Similarity=-0.038 Sum_probs=167.9
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHh
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp---~~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~ 124 (661)
+|+.++++...+=+|..+..+.+...+... . |- ..+++.+++.++........+..+.+.-. ......+..|
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~F 98 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMPF 98 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTTS
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhhc
Confidence 467899999999998888887777655433 2 43 35555555555444444444455544332 3555888889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChh-hHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 006102 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (661)
Q Consensus 125 G~~~gfi~gw~~~l~~~~~~aa~a~~~~~~l~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~ 203 (661)
|+..+.+......+.++...+......++.+...++.....+ .+ +..+++.++...+...|.|..
T Consensus 99 G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~--------------v~~~i~~~l~~~~~~~G~~~i 164 (501)
T 2jln_A 99 GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLP--------------LWIVIFGAIQVVTTFYGITFI 164 (501)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHHHHTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH--------------HHHHHHHHHHHHHHHhCHHHH
Confidence 998888877777766666666555555555554432000011 11 123345556777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCCCCchhHHHHHHHHHH-HHHhhhhhHHhcchhhhcCcccC-
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATV-FFAFIGFDAVASTAEEVKNPQRD- 281 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~~~~~~~~~~~~~~~~p~g~~gi~~~~~~~-~faf~G~e~ia~~a~E~knP~k~- 281 (661)
.+++.+...+.++.++.+.+..+...+.+ +.+.....+- ....+++.++..+ -+...+.-..+.++.+.|++++.
T Consensus 165 ~~~~~~~~p~~~i~~i~~~~~~l~~~g~~-~~~~~~~~~~--~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~ 241 (501)
T 2jln_A 165 RWMNVFASPVLLAMGVYMVYLMLDGADVS-LGEVMSMGGE--NPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAS 241 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHTTCCCS--SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhccCCc--cchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccc
Confidence 99999999888887776666555433210 0100000000 1112234443332 22223335567788888876441
Q ss_pred ----------cchHhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHcCchHH-HHHHH-HHHHHHHHHHHH-
Q 006102 282 ----------LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA-SYVIT-IGAVTALCSTLM- 348 (661)
Q Consensus 282 ----------iP~aii~s~~i~~v~Yil~~~~l~~~vp~~~~~~~~~~~~a~~~~g~~~~-~~iv~-i~~~~~~~~s~~- 348 (661)
.-.+...+..+...+..+..+.+... ....+|.....+...++.. ..+.. +.++++..++..
T Consensus 242 ~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~ 316 (501)
T 2jln_A 242 REGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPA 316 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333332222222221 1234555444342333322 55666 666777766655
Q ss_pred hhhchhhHHHHHHHhcCCCccccccccccccCcchHHHHHHHHHHHHHHhcCHHHH
Q 006102 349 GSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSAL 404 (661)
Q Consensus 349 ~~~~~~sR~l~ama~dg~lP~~f~~~~~~~~~P~~a~l~~~ii~~l~~~~~~~~~L 404 (661)
+.+++.+--+..+ .|++ +++| .+.++.++++.+++.....+.+
T Consensus 317 ~n~ys~~~~l~~~-----~~~~---i~~~-----~~~~i~~vi~~~i~~~~~~~~f 359 (501)
T 2jln_A 317 ANLLSPAYTLCST-----FPRV---FTFK-----TGVIVSAVVGLLMMPWQFAGVL 359 (501)
T ss_dssp HHTHHHHHHHHHH-----STTT---CCHH-----HHHHHHHHHHHHTCGGGTHHHH
T ss_pred hhHHHHHHHHHHh-----Cccc---cchh-----HHHHHHHHHHHHHHHHHhHHHH
Confidence 3666666555444 3433 2222 3455556666555444433433
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.58 E-value=0.00027 Score=79.90 Aligned_cols=289 Identities=13% Similarity=0.081 Sum_probs=140.5
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
.|+++++-..+-.+++.+++.-+......++. .|.. ..+.| .+++.....++.+...-.+. +.-..+.|.++-+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEW-MSAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHH-HHHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHH-HHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47889887665555666666666544444444 3433 22222 12233333444444444443 335799999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 006102 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~-~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~~~i~~~G~k~~~~ 205 (661)
....+.+....+.+.. ..+....+.+..++.+++ .|.+.. ..+..++.......-|.|...+
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G----i~~~~~-------------i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYS-------------ILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHTTC---CCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHHH-------------HHHHHHHHHHHHHhcchHHHHH
Confidence 8877776655544433 334444444555665554 222211 0111112233334457776666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc----------------ccCCCCCCCCCC--CCC-chhHHHHHHHHHHHHHhhhhh
Q 006102 206 AQAIVTTANVLAMLFVIIAGSYLGF----------------KTGWSGYELPTG--YFP-FGVNGMLAGSATVFFAFIGFD 266 (661)
Q Consensus 206 ~~~i~~~~~l~~ll~iii~g~~~~~----------------~~~~~~~~~~~~--~~p-~g~~gi~~~~~~~~faf~G~e 266 (661)
...+=.+++++..+++.+.++.... .+.++...++++ +.. .++.-++.+......+|.|.+
T Consensus 188 TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 267 (593)
T 2xq2_A 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN 267 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 6655555555544443333322110 111111111110 000 122222222222334455555
Q ss_pred -HHhcchhhhcCcccCcchHhHHHHHHHHHHHHHHH---HHHHhc-cc--------------CCCC-CCCCHHHHHHHHc
Q 006102 267 -AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVS---IVIVGL-VP--------------YYEM-DPDTPISSAFASH 326 (661)
Q Consensus 267 -~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil~~---~~l~~~-vp--------------~~~~-~~~~~~~~a~~~~ 326 (661)
...+-.=+.||+ |+..|+...+.....++..+.. ++.... .+ ..+. +++..+.... +.
T Consensus 268 q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~ 345 (593)
T 2xq2_A 268 QYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QF 345 (593)
T ss_dssp CSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HT
T ss_pred hHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HH
Confidence 244455577775 6777887776655444333221 111111 00 1122 3344556556 66
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 327 GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 327 g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
..+++.-++..+++.+..++..+.+.+.+-++
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888777776554
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.29 E-value=0.0032 Score=70.02 Aligned_cols=287 Identities=13% Similarity=0.073 Sum_probs=136.9
Q ss_pred ccccCHHHHHHHHHhhhhhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhch
Q 006102 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (661)
Q Consensus 48 ~r~L~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~-~il~~ll~~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~ 126 (661)
.|+++++-..+-.+++.+++.-+......++. .|.. ..+.|. +++.....+..++..-.+. +.-..+.|.++-+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 47899998887777777777666554444444 3543 222222 2233333444444443332 335799999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCChhhHhhhccCCCCccchhHHHHHHHHHH--HHHHHHhhHHH
Q 006102 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIV--TGLLCVGIKES 203 (661)
Q Consensus 127 ~~gfi~gw~~~l~~~~-~~aa~a~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~ii~~~--~~i~~~G~k~~ 203 (661)
....+.+...++.|.. ..++...+.+..++..++ .|.+. ++++..++ .....-|.|..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----i~~~~---------------~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMY---------------SILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----CCHHH---------------HHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH---------------HHHHHHHHHHHHHHhcchHHH
Confidence 8877777655544433 233333333444554443 22221 22222222 12223467766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc----------------cccCCCCCCCCC--CCCC-chhHHHHHHHHHHHHHhhh
Q 006102 204 TIAQAIVTTANVLAMLFVIIAGSYLG----------------FKTGWSGYELPT--GYFP-FGVNGMLAGSATVFFAFIG 264 (661)
Q Consensus 204 ~~~~~i~~~~~l~~ll~iii~g~~~~----------------~~~~~~~~~~~~--~~~p-~g~~gi~~~~~~~~faf~G 264 (661)
.+...+-..+.++..+++.+.++... ..+.++...+++ .+.+ .++.-++.+....-+.|.|
T Consensus 157 ~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g 236 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG 236 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHc
Confidence 66655555555544443333332211 011111110010 1111 1222223332222344555
Q ss_pred hhH-HhcchhhhcCcccCcchHhHHHHHHHHHHHHH---HHHHHHhccc----------------CCCCCCCCHHHHHHH
Q 006102 265 FDA-VASTAEEVKNPQRDLPLGIGTALSICCALYML---VSIVIVGLVP----------------YYEMDPDTPISSAFA 324 (661)
Q Consensus 265 ~e~-ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil---~~~~l~~~vp----------------~~~~~~~~~~~~a~~ 324 (661)
.+- ..+-.=.+||+ |+..|+.+++......+.++ ..++.....+ .+..+++..+....+
T Consensus 237 ~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~ 315 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ 315 (530)
T ss_dssp TTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH
Confidence 432 33333335664 56667777665544332211 1111111111 112234556666555
Q ss_pred HcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 006102 325 SHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (661)
Q Consensus 325 ~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (661)
...+++.-++..+++.+..++..+.+.+.+-.+
T Consensus 316 -~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 316 -FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp -TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666788888888888888888888877777654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.54 E-value=0.03 Score=61.61 Aligned_cols=245 Identities=18% Similarity=0.216 Sum_probs=131.9
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHhccChHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCccHHHHHHHHhchh
Q 006102 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIA----GIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (661)
Q Consensus 52 ~~~~l~~l~ig~~iG~Gif~~~g~ia~~~aGp~~il~~ll~----~l~~l~~al~~aElas~~P~~Gg~y~y~~~~~G~~ 127 (661)
+..+.++-++|+.+|.|..-.-...+.+++|.+-++-+++. |+-.+..-++...++++..+.|..-.|-+. ..+.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l-~~~~ 88 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL-WRNR 88 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH-SCSH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHh-cCCc
Confidence 55788889999999999998888888898887755545443 333444444445544445555555555332 1211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHccCC----Chh----------hHhhhc-cCC-------CCccch
Q 006102 128 VAWLIGWALILEYTIGGSAVAR--GI--SPNLAMLFGSAD----SLP----------FFMARQ-QIP-------GLGIIV 181 (661)
Q Consensus 128 ~gfi~gw~~~l~~~~~~aa~a~--~~--~~~l~~~~~~~~----~~p----------~~~~~~-~~~-------~~~~~~ 181 (661)
..-..||...+........+.. +| .....++.+... ..+ .+..+. +.+ ...+..
T Consensus 89 ~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 89 FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHH
Confidence 1122334333222222222221 11 112222222210 001 111110 010 111223
Q ss_pred hHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhhhccc----c-cCCCCCCCCCCCCCc-hhHHHHHH
Q 006102 182 DPCAAILVLIVTGLLCVGI-KESTIAQAIVTTANVLAMLFVIIAGSYLGF----K-TGWSGYELPTGYFPF-GVNGMLAG 254 (661)
Q Consensus 182 ~~~a~~ii~~~~~i~~~G~-k~~~~~~~i~~~~~l~~ll~iii~g~~~~~----~-~~~~~~~~~~~~~p~-g~~gi~~~ 254 (661)
-+.-++..++..++..+|+ |-..|++.++..+-++.++++.+-++.... . ++...+..+ ++... +..-+..+
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~P-d~s~L~~~~vw~~A 247 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTP-DFEKLKDPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSC-CTTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcC-CHHHhCCHHHHHHH
Confidence 2334455556777788999 678999999988887777777766655432 1 000000001 11111 13446778
Q ss_pred HHHHHHHh-hhhhHHhcchhhhcCcccCcchHhHHHHHHHHHHHHH
Q 006102 255 SATVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYML 299 (661)
Q Consensus 255 ~~~~~faf-~G~e~ia~~a~E~knP~k~iP~aii~s~~i~~v~Yil 299 (661)
+..+||++ .|+-...+++.-.|+ +.|++|..+....+-+..-++
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 88899998 588888888888876 678888766666555444433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=64.75 E-value=1.6e+02 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=27.4
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcC
Q 006102 319 ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (661)
Q Consensus 319 ~~~a~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg 365 (661)
+...+++.. ++.++.+..++.++....++..+.+-++-.++.+|
T Consensus 400 lf~~l~~lP---~~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g 443 (539)
T 4ain_A 400 LFGLLHALP---GGQIMGIIAMILLGTFFITSADSASTVMGTMSQHG 443 (539)
T ss_dssp HHHHHHTST---THHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTT
T ss_pred HHHHHHHCc---hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCC
Confidence 334444443 34455555566666667777778888887787655
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=39.36 E-value=3.9e+02 Score=28.73 Aligned_cols=35 Identities=11% Similarity=-0.064 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHhcCC
Q 006102 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGL 366 (661)
Q Consensus 332 ~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~ 366 (661)
+.++.+..++.+.....++..+.+-++-.++.+|.
T Consensus 409 ~~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~ 443 (509)
T 2wsw_A 409 STATMWGFFILCFIATVTLINACSYTLAMSTCRSM 443 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCC
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCC
Confidence 34555555555556667777778888888887663
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=10.39 E-value=6.3e+02 Score=24.82 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=11.0
Q ss_pred ccccCCCCCCcccccc
Q 006102 559 ARHNFGHAGGFMCPFV 574 (661)
Q Consensus 559 ~~~~~~~~~~f~~P~~ 574 (661)
..|.|+....+..|+=
T Consensus 40 ~~h~~dgi~e~~nplp 55 (311)
T 3mk7_C 40 MGHAFDGIEEYDNPLP 55 (311)
T ss_dssp CSCCBTTBCBCCCCCC
T ss_pred CCCCccChhhccCCCC
Confidence 4677766667888763
Done!