Query 006105
Match_columns 661
No_of_seqs 163 out of 226
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2432 Uncharacterized conser 100.0 3E-162 5E-167 1276.0 43.6 561 1-639 1-565 (565)
2 PF09794 Avl9: Transport prote 100.0 1.4E-39 3.1E-44 350.2 19.8 251 26-367 1-313 (379)
3 PF08616 SPA: Stabilization of 99.9 6.8E-25 1.5E-29 200.7 10.1 100 261-368 3-108 (113)
4 KOG3823 Uncharacterized conser 99.9 4.6E-23 1E-27 219.4 17.6 247 25-367 10-317 (630)
5 PF07792 Afi1: Docking domain 99.8 3E-21 6.6E-26 183.6 10.4 143 26-178 2-144 (145)
6 smart00799 DENN Domain found i 99.8 1E-17 2.2E-22 165.5 15.0 166 155-356 2-169 (183)
7 PF02141 DENN: DENN (AEX-3) do 99.6 7.8E-15 1.7E-19 144.5 11.2 165 153-352 1-168 (185)
8 PF09804 DUF2347: Uncharacteri 99.2 8.6E-10 1.9E-14 116.0 20.9 250 29-368 1-275 (280)
9 KOG3569 RAS signaling inhibito 99.1 2.6E-09 5.5E-14 113.7 19.6 251 17-354 5-263 (425)
10 KOG4704 Uncharacterized conser 98.2 4.5E-05 9.7E-10 80.9 14.9 266 26-367 3-290 (431)
11 KOG3570 MAPK-activating protei 97.9 4.7E-05 1E-09 88.1 9.2 81 270-355 306-386 (1588)
12 KOG1090 Predicted dual-specifi 96.5 0.021 4.6E-07 68.0 12.1 173 149-362 97-272 (1732)
13 KOG2080 Uncharacterized conser 94.5 0.17 3.6E-06 59.9 9.5 271 17-324 61-377 (1295)
14 KOG2432 Uncharacterized conser 94.5 0.0049 1.1E-07 68.0 -2.6 114 535-656 213-332 (565)
15 KOG2127 Calmodulin-binding pro 90.5 1.1 2.3E-05 54.9 9.5 76 271-354 33-108 (1020)
16 smart00800 uDENN Domain always 89.3 1.3 2.7E-05 38.9 6.7 65 24-88 3-75 (89)
17 PF03456 uDENN: uDENN domain; 75.1 5 0.00011 32.9 4.4 48 40-88 2-51 (65)
18 PF03455 dDENN: dDENN domain; 62.1 7.3 0.00016 32.2 2.7 66 465-553 3-68 (68)
19 smart00801 dDENN Domain always 58.4 14 0.00031 30.5 3.9 67 466-553 3-69 (69)
20 PF03808 Glyco_tran_WecB: Glyc 46.8 42 0.00092 32.9 5.7 87 279-367 44-136 (172)
21 PRK09644 RNA polymerase sigma 43.3 82 0.0018 29.9 7.1 26 614-639 94-119 (165)
22 PF12095 DUF3571: Protein of u 43.2 26 0.00056 31.0 3.1 27 609-636 24-50 (83)
23 cd06533 Glyco_transf_WecG_TagA 40.2 98 0.0021 30.4 7.2 80 283-366 46-133 (171)
24 TIGR03209 P21_Cbot clostridium 36.2 1.1E+02 0.0023 28.3 6.5 22 618-639 97-118 (142)
25 PHA02414 hypothetical protein 35.7 85 0.0018 28.6 5.2 49 584-633 4-52 (111)
26 PF10906 DUF2697: Protein of u 32.2 43 0.00093 28.6 2.7 24 536-559 4-27 (68)
27 cd00923 Cyt_c_Oxidase_Va Cytoc 28.0 2.8E+02 0.006 25.6 7.2 48 535-599 10-57 (103)
28 KOG0570 Transcriptional coacti 23.8 3.9E+02 0.0084 27.6 8.1 19 507-526 49-67 (223)
29 PF15320 RAM: mRNA cap methyla 23.6 46 0.00099 29.3 1.4 15 319-333 10-24 (81)
30 PF06218 NPR2: Nitrogen permea 21.9 66 0.0014 36.6 2.7 42 26-67 5-48 (428)
31 COG4220 Phage DNA packaging pr 21.8 4.7E+02 0.01 26.2 8.1 56 562-636 77-132 (174)
32 PF05347 Complex1_LYR: Complex 21.7 78 0.0017 25.0 2.4 40 533-573 3-42 (59)
33 PF07798 DUF1640: Protein of u 21.2 1.6E+02 0.0035 29.1 5.0 17 507-523 2-18 (177)
34 PRK11922 RNA polymerase sigma 20.8 2.6E+02 0.0056 28.4 6.6 132 497-639 5-160 (231)
35 KOG2200 Tumour suppressor prot 20.3 2.7E+02 0.0059 33.0 7.0 81 500-598 311-405 (674)
No 1
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-162 Score=1276.00 Aligned_cols=561 Identities=40% Similarity=0.679 Sum_probs=508.7
Q ss_pred CCCCCCcccccccCCCC---ChhhhHhHhheeEEEEeeCCCCccceeeCCCCC-CChhhhhhcccccCCCccccccCccc
Q 006105 1 MSRSPSFSVKSELSLKP---DPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSS 76 (661)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~Wv~~icVV~FDle~Gq~vE~~YP~~~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~ 76 (661)
|+|++++.|+.+++... ||++|++|+||||||+||+|+||++|+|||+++ ||++|+.||||+||||| |++|
T Consensus 1 ~~re~~~~va~~~~~epd~e~w~~f~~WlHc~Cvv~FDLelGQalE~iYP~~~~ls~~E~~nicy~aFPDS-----Ns~~ 75 (565)
T KOG2432|consen 1 REREHQNVVATNSNSEPDAEDWDNFSQWLHCFCVVTFDLELGQALEVIYPPDFMLSDQEKINICYLAFPDS-----NSSC 75 (565)
T ss_pred CCCcccccccCCCCCCCCchhHHHHHHhheeeEEEEechhhcceeeeecCCccccccchheeeeEeecCCC-----Cccc
Confidence 79999999998887755 588899999999999999999999999999999 99999999999999999 8999
Q ss_pred CceeEEEEEeccCCCCCCCCCCCccccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeE
Q 006105 77 IHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQK 156 (661)
Q Consensus 77 ~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~svkRGy~QK 156 (661)
+|||+||||+|+..+...- ..+ +++ |..+..+..|+||||||||++|++++|||+||
T Consensus 76 ~~Dt~F~fR~R~~~~~~~~-------~~~---------------dkd-~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QK 132 (565)
T KOG2432|consen 76 MGDTKFHFRFRRTTRRDSL-------PGY---------------DKD-PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQK 132 (565)
T ss_pred cccceEEEEEecccccccc-------ccc---------------cCC-CcccCCCCceeEEEEeeeeechhhhhhhhhhh
Confidence 9999999999997543331 011 122 56788999999999999999999999999999
Q ss_pred EEEEeeCCCchhhHHHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCcccc
Q 006105 157 SLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSE 236 (661)
Q Consensus 157 SlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~ 236 (661)
||||+|++||+++|++++..++|.||+.|+.++|+||+.|+.||.|++|.++|||++|.+++++||+.++.|...+..
T Consensus 133 Svviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~~-- 210 (565)
T KOG2432|consen 133 SVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARKT-- 210 (565)
T ss_pred ceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccCCceeeecccceeeeeeccccccCccccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999765421
Q ss_pred ccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcc
Q 006105 237 ESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDF 316 (661)
Q Consensus 237 ~~~s~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~ 316 (661)
.... +...++.++++.+|++|||+++..+..|||+|||+||+||||+|+|++|++|||+|.++++||+||.||.|+
T Consensus 211 -~~~e---~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~df 286 (565)
T KOG2432|consen 211 -GAVE---LRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDF 286 (565)
T ss_pred -ceee---eccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCC
Confidence 1111 334567778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCCCCCcccccccccCCCCCCCCCCCccccc
Q 006105 317 RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQ 396 (661)
Q Consensus 317 RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (661)
||||||||++|++|++.. ..+|.+|||||||||.|+++|||||++||+++++.++. ++
T Consensus 287 RPYFTIHDseF~e~tS~~--~sdP~~iLGVTNpFF~K~L~~wPHilrv~~~~~n~~~~--------------------~~ 344 (565)
T KOG2432|consen 287 RPYFTIHDSEFREYTSNV--DSDPLVILGVTNPFFRKALAHWPHILRVGDNQPNMQQQ--------------------QQ 344 (565)
T ss_pred CceeeeccHHHHHHHhcc--CCCCceEEecCCHHHHHHHhcCcceeeecCCCccccch--------------------hh
Confidence 999999999999999865 56699999999999999999999999999998764331 11
Q ss_pred cccccCccchhhHhhhccCCCccccccccchhhhhcccCCCCChHHHHHHHhcCCCCCccchhhhhchHHHHHHHHHHHH
Q 006105 397 LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTT 476 (661)
Q Consensus 397 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~k~~~~t~y~~~l~~Dk~~lk~L~~~~~~~~~~e~~~~v~~~iLRRHF~eLT~ 476 (661)
. |.+|.....-++++|+|+||+|+||++|||+++|||++|++++|++| |||++|||||+||||
T Consensus 345 k-------------~~~kl~~~~~~Lns~~gl~t~Ykp~lkkD~slikkll~g~~~krpee----vqs~ilrrhfLElt~ 407 (565)
T KOG2432|consen 345 K-------------KAKKLASANTTLNSKAGLYTKYKPYLKKDKSLIKKLLLGMKTKRPEE----VQSAILRRHFLELTQ 407 (565)
T ss_pred h-------------hhhhhhhhccccCCCccceeccccccCccHHHHHHHHHhcccCChHH----HHHHHHHHHHHHhcc
Confidence 1 11111111227899999999999999999999999999999999999 999999999999999
Q ss_pred HhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHH
Q 006105 477 NFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAA 556 (661)
Q Consensus 477 ~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~ 556 (661)
+||+||+|||+++||.++||||++||.+..|..||||.+||++|+ |||+++||||.||||||+|||||.|||..||+|
T Consensus 408 ~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp--~lt~r~kgdw~glyrrflrspnf~gwf~~rr~e 485 (565)
T KOG2432|consen 408 SFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGP--QLTSRLKGDWKGLYRRFLRSPNFRGWFGARRRE 485 (565)
T ss_pred ceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCc--cccccccCCcHHHHHHHccCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCcHHHHHH
Q 006105 557 AEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQQL 636 (661)
Q Consensus 557 ~~~~~~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dlq~~ 636 (661)
|+|+|++||++|+|.+|+.+|+++|+|||+||||+|||++| ++..+. ..+++..|.+||+.||++|++.||+|||+|
T Consensus 486 ~~q~l~~l~l~al~~~dl~~w~~~~~eve~vd~~lklk~kl-l~~d~~--~~~~~~~t~qklr~~i~a~~~~lp~dlq~~ 562 (565)
T KOG2432|consen 486 LQQTLQDLQLQALSVADLEHWAHDKQEVEIVDMILKLKQKL-LYGDKA--TQLNNGSTQQKLRAQIEAMKGLLPPDLQNV 562 (565)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHhhcchHHHHHHHHHHHHHH-Hhhhhh--hcCCCcchHHHHHHHHHHHHhhCCHhHHhh
Confidence 99999999999999999999999999999999999999977 333222 225778899999999999999999999999
Q ss_pred Hhc
Q 006105 637 LLF 639 (661)
Q Consensus 637 l~~ 639 (661)
|+.
T Consensus 563 lll 565 (565)
T KOG2432|consen 563 LLL 565 (565)
T ss_pred hcC
Confidence 873
No 2
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=100.00 E-value=1.4e-39 Score=350.22 Aligned_cols=251 Identities=25% Similarity=0.427 Sum_probs=205.8
Q ss_pred hheeEEEEeeCCCCccceeeCCCC---C-CChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCcc
Q 006105 26 VVAFCTIRFDLEQGQLIEDCYPPG---C-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSE 101 (661)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~---~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~ 101 (661)
|+|||||+|||++||+||++|||+ . ..++||.+|||+|||||+ ++|++|++| |+++...
T Consensus 1 i~~i~vV~Fhh~~G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~-----h~~~ed~~y-F~l~~~~----------- 63 (379)
T PF09794_consen 1 ILCICVVGFHHERGPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGA-----HNSEEDFSY-FTLPYDA----------- 63 (379)
T ss_pred CeEEEEEecccccCCeEEEEeCCCCCccccchhhHhhCCccccCCcc-----ccCCCceEE-EEeccCC-----------
Confidence 689999999999999999999953 2 678899999999999995 568999888 6887542
Q ss_pred ccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeec-------CCCccCcceeEEEEEeeCCCchhhHHHHH
Q 006105 102 ITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRH-------DERLKRGGEQKSLVILSHGPFSSVFRPLL 174 (661)
Q Consensus 102 ~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~k-------D~svkRGy~QKSlVIlS~lPy~~lF~~lL 174 (661)
....+..++||++||||.+ |++++|||+||||||||+.||+++|+..|
T Consensus 64 -------------------------~~~~~~~~lfGisc~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL 118 (379)
T PF09794_consen 64 -------------------------SLNRDATTLFGISCFRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKL 118 (379)
T ss_pred -------------------------CCCCCCceeeceeeHhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHH
Confidence 1234578999999999975 79999999999999999999999999999
Q ss_pred HHhccccccccH----HHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCC
Q 006105 175 QIMGPLYFDVGK----KAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQ 250 (661)
Q Consensus 175 ~~i~p~yF~~g~----~~LE~a~~~I~~WP~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~ 250 (661)
++++++||++++ ..|+.+++++++|.....++.+ + +
T Consensus 119 ~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~~~-----~----------------------~------------- 158 (379)
T PF09794_consen 119 SIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGESL-----Q----------------------E------------- 158 (379)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccccccc-----c----------------------c-------------
Confidence 999999999884 8999999999999766544311 0 0
Q ss_pred CCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCC----CC-------------
Q 006105 251 SIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL----CS------------- 313 (661)
Q Consensus 251 ~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~----y~------------- 313 (661)
...|..+++-..+..+-+++++||+|+|++++|||+|++...+|++++||+|||..+- .|
T Consensus 159 ---~~~y~glslr~lv~~fr~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~ 235 (379)
T PF09794_consen 159 ---SDLYVGLSLRELVHNFRHKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWP 235 (379)
T ss_pred ---hhhhcCCCHHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccc
Confidence 0113344555566666788999999999999999999999999999999999987652 11
Q ss_pred -----------------------------CcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcC-CCeEEE
Q 006105 314 -----------------------------IDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRK-IPHIVS 363 (661)
Q Consensus 314 -----------------------------gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~-WPhil~ 363 (661)
+-|-||++++--|. +++ ....++++|+||..|.+.-+. -+.||+
T Consensus 236 ~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQqld~--L~~----~~~~s~lvGtTN~Lf~qqk~~~~DvlVd 309 (379)
T PF09794_consen 236 LSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQQLDL--LSD----PNTKSYLVGTTNSLFLQQKDLYADVLVD 309 (379)
T ss_pred cCCCcccccCcccchHHHcCCCeeecCCCceecCcccHHHHHH--hhc----cCccEEEEeeChHHHHhCcccccCEEEE
Confidence 33789998886543 222 356789999999999998887 888899
Q ss_pred cCCC
Q 006105 364 VGSP 367 (661)
Q Consensus 364 l~~~ 367 (661)
+...
T Consensus 310 ld~~ 313 (379)
T PF09794_consen 310 LDTG 313 (379)
T ss_pred ecCC
Confidence 8753
No 3
>PF08616 SPA: Stabilization of polarity axis
Probab=99.92 E-value=6.8e-25 Score=200.69 Aligned_cols=100 Identities=37% Similarity=0.615 Sum_probs=87.7
Q ss_pred chhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhH--HHHHHHHHHHhhcC---CC-CCCcccccccccCcchhhhhccc
Q 006105 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQ--CCEAVASLVSLIAP---LL-CSIDFRPYFTIHDPQFAHLNSLQ 334 (661)
Q Consensus 261 ~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~--~S~aVlaL~SLI~P---L~-y~gd~RPYfTIhD~dF~~l~~~~ 334 (661)
++++.+..+.+++|+|||++|++|||||+|++|+. ||++|+||++||+| +. |.+++|||||||| ++++
T Consensus 3 ~l~~~~~~f~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~--~~~l---- 76 (113)
T PF08616_consen 3 SLLHLFQQFGPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISD--LDEL---- 76 (113)
T ss_pred cHHHHHHhhhhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechh--hhhh----
Confidence 45677778899999999999999999999999888 99999999999999 33 4588899999999 3333
Q ss_pred CCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCC
Q 006105 335 EGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (661)
Q Consensus 335 ~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (661)
...|++|+|||||||+++.++|||++++++..
T Consensus 77 --~~~~~~I~GvtNP~F~~~~~~wD~~~~l~~~~ 108 (113)
T PF08616_consen 77 --KSCPGYIAGVTNPIFEKRLDWWDHLCDLDTGE 108 (113)
T ss_pred --ccCCCEEEEeCCHHHHhccccCCEEEEcCCCe
Confidence 35678999999999999999999999998753
No 4
>KOG3823 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=4.6e-23 Score=219.41 Aligned_cols=247 Identities=20% Similarity=0.285 Sum_probs=190.6
Q ss_pred HhheeEEEEeeCCCCccceeeCCCC--CCChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCccc
Q 006105 25 WVVAFCTIRFDLEQGQLIEDCYPPG--CLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEI 102 (661)
Q Consensus 25 Wv~~icVV~FDle~Gq~vE~~YP~~--~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~ 102 (661)
.+.|++||+|++.+||.||+.||.. .-.+++|.+++|+|+||++| +..+|++|| .+.-.
T Consensus 10 ~~KOG~~vgFHHkrGpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsH-----sfeedfvyF-tLp~~------------- 70 (630)
T KOG3823|consen 10 PILCLLVVGFHHKRGPEIEFSHPSPERNECPSGWKYLPFLALPDGSH-----SFEEDFVYF-TLPSL------------- 70 (630)
T ss_pred ceEEEEeeecccccCCceeeecCCCCcCcCccccccCcceecCCCcc-----ccccceEEE-ecccc-------------
Confidence 4689999999999999999999643 35677999999999999976 468888875 54431
Q ss_pred cccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeee-------cCCCccCcceeEEEEEeeCCCchhhHHHHHH
Q 006105 103 TEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQR-------HDERLKRGGEQKSLVILSHGPFSSVFRPLLQ 175 (661)
Q Consensus 103 ~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~-------kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~ 175 (661)
..+.+.+.+||..|+||. ||++++|..+|||||||+|+|.++-.+..|.
T Consensus 71 ------------------------~~PnDegtifgvSC~RQi~~~~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL~ 126 (630)
T KOG3823|consen 71 ------------------------YEPNDEGTIFGVSCYRQIRVEKLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKLA 126 (630)
T ss_pred ------------------------cCCCCCccEEEEEeehhhhhhhhcccccccchhhhheeEEEEEcCCccceehhhhH
Confidence 112346799999999996 6899999999999999999999999999999
Q ss_pred Hhcccccccc----HHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCC
Q 006105 176 IMGPLYFDVG----KKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQS 251 (661)
Q Consensus 176 ~i~p~yF~~g----~~~LE~a~~~I~~WP~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~~ 251 (661)
+++.+||+.| ..+|..+|++++.+=.|.-.. -
T Consensus 127 iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R--------------~------------------------------ 162 (630)
T KOG3823|consen 127 IVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSR--------------R------------------------------ 162 (630)
T ss_pred HhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhc--------------c------------------------------
Confidence 9999999976 489999999998863321000 0
Q ss_pred CCCccccccchhhhhHh----hhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCC-----------------
Q 006105 252 IPQGLFHDSDLFGTFRG----LLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPL----------------- 310 (661)
Q Consensus 252 ~P~~~~~~~~lf~~f~~----~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL----------------- 310 (661)
|...+| |-| .+++. .-++-.+|.+++|++++|||+|.+..+.|+..++|+|||.-+
T Consensus 163 -~e~~~h-IgL-~nLr~il~~wr~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP~~Ms~lqDs~sp~a~~~e~ 239 (630)
T KOG3823|consen 163 -PERHFH-IGL-SNLREILLHWRHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIPSPMSDLQDSLSPEAQEAEA 239 (630)
T ss_pred -hhhhee-ehH-HHHHHHHHHHHHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcCCcchhhhcccChhHHHHHH
Confidence 011122 111 13333 346688999999999999999999999999999999999533
Q ss_pred -----------------CC----------CCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEE
Q 006105 311 -----------------LC----------SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVS 363 (661)
Q Consensus 311 -----------------~y----------~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~ 363 (661)
.| ++-|-||...+-- ++. .....-.+++|+||-.|...-+--.||+-
T Consensus 240 ~L~~vaS~~~sd~~slla~~GfPl~IF~~G~lfsPYtpLq~m---~~l---~~~~~ls~~iGtsNtL~~~~~~~~~~~vv 313 (630)
T KOG3823|consen 240 ELEAVASVAASDEQSLLASAGFPLSIFASGNLFSPYTPLQYM---DLL---SDPMVLSYVIGTSNTLFQQKRQLADVLVV 313 (630)
T ss_pred hhccchhhhcccHHHHHHhcCCceeeeccCcccCCCCchHHH---hhh---cccceeEeeecCchHHHHHhhhhccEEEE
Confidence 01 2348888877643 222 12345679999999999999999999998
Q ss_pred cCCC
Q 006105 364 VGSP 367 (661)
Q Consensus 364 l~~~ 367 (661)
+.+.
T Consensus 314 ~~dt 317 (630)
T KOG3823|consen 314 IEDT 317 (630)
T ss_pred ecCc
Confidence 7764
No 5
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=99.85 E-value=3e-21 Score=183.55 Aligned_cols=143 Identities=21% Similarity=0.347 Sum_probs=98.1
Q ss_pred hheeEEEEeeCCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCcccccc
Q 006105 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEI 105 (661)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~ 105 (661)
|++|++++||+|.|++|+|+||...-+.+++.+||.+|+||++|.+ .+|+++||--+..............
T Consensus 2 veyIL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelMLPDg~h~r-----~~DwTvFfL~~~~~~~~~~~~~~~~---- 72 (145)
T PF07792_consen 2 VEYILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELMLPDGAHKR-----SEDWTVFFLNRDKSTEEFQLFKNKK---- 72 (145)
T ss_pred eeEEEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhCCcccccc-----cCCEEEEEEccCCCCchhhhccccc----
Confidence 7899999999999999999999986332389999999999999853 5595554433433221111000000
Q ss_pred ccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeEEEEEeeCCCchhhHHHHHHHhc
Q 006105 106 NDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMG 178 (661)
Q Consensus 106 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~ 178 (661)
+.. .++...+.+..+.+.......+...+|+++++|+++|++++||..+|||+|||++||+.+|+++|.++.
T Consensus 73 ~~~-~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~laL 144 (145)
T PF07792_consen 73 SPS-NSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTKHDKTVRRGAVVKAMAICTRHPFFHIFKPLLLLAL 144 (145)
T ss_pred ccc-ccccccccccccccccccccCCCCceEEEEeeccccCcccccccceeEEEEEcccHHHHHHhHHHHHhh
Confidence 000 000000000001112223445678999999999999999999999999999999999999999998764
No 6
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.76 E-value=1e-17 Score=165.49 Aligned_cols=166 Identities=21% Similarity=0.327 Sum_probs=135.7
Q ss_pred eEEEEEeeCCCchhhHHHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccceeEE--EeCCCCCCCCCccC
Q 006105 155 QKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLK--VNLPPAHSLPLESG 232 (661)
Q Consensus 155 QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~P~pg~~l~Lp~lg~vl~--~~iP~~~~~p~~~~ 232 (661)
-|++||+||+||+++|+.+|..+...|++..+..+|.+++++. ||.|.||.++.+..+|.... +.-|..
T Consensus 2 p~~icilS~~P~~~~f~~~L~~l~~~~~~~~~~~~e~~~~~~~-~p~P~pg~~~~~~~~~~~~~~~~~~p~~-------- 72 (183)
T smart00799 2 PKCICILSRLPFFELFRKILNELYRLLPSSSNLPLELLISLLL-YPVPPPGGSLVLVSLGPGDLIELQRPLD-------- 72 (183)
T ss_pred CeEEEEEeCCcHHHHHHHHHHHHHHHHccCccchHHHHHHHhC-CCCCcCCCeEEEEEcCCCCcEEEECCCC--------
Confidence 4899999999999999999999999999887888898888886 89999999988876663322 222211
Q ss_pred ccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCC
Q 006105 233 MLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLC 312 (661)
Q Consensus 233 ~~~~~~~s~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y 312 (661)
...|...++...+|++|. ..++..||+++|++++|+|+|.+++.+|.+|.|+++||.|++|
T Consensus 73 -----------------~~lp~~~~~~~~lf~~l~--~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w 133 (183)
T smart00799 73 -----------------SSLPLIDFSLHELFECLG--VENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVW 133 (183)
T ss_pred -----------------CCCCCCCccHHHHHHhCC--HHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccC
Confidence 111333455566777765 7999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhc
Q 006105 313 SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALR 356 (661)
Q Consensus 313 ~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~ 356 (661)
.+.|.|....+.. ++. ++|.++|+||++.++.+.-+
T Consensus 134 ~~~~iP~lp~~l~---~~l-----~aP~P~iiGv~~~~~~~~~~ 169 (183)
T smart00799 134 QHIYIPILPASLL---DVL-----SAPTPFIIGVHSSYFEEVKE 169 (183)
T ss_pred CceEEEECCHHHH---HHh-----cCCCCEEEEechhHhHHhhc
Confidence 9999997766544 444 47899999999999987654
No 7
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=99.58 E-value=7.8e-15 Score=144.50 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=105.2
Q ss_pred ceeEEEEEeeCCCchhhHHHHHHHhccccccccHHHHHHHHHH-hccCCCCCCCCceeecc--cceeEEEeCCCCCCCCC
Q 006105 153 GEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASY-VSIWPSPVPGKLMELPI--GNAMLKVNLPPAHSLPL 229 (661)
Q Consensus 153 y~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~-I~~WP~P~pg~~l~Lp~--lg~vl~~~iP~~~~~p~ 229 (661)
|++|++|++||+||+.+|+.+|+.+...+++.....+|..+.+ +..+|.|.+|.+..... .+..+.+..|...+.
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~l-- 78 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRINPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDL-- 78 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHS----TT-B--------------B---SSS---
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCC--
Confidence 7899999999999999999999999999998877888888888 78899999999888744 333344444432111
Q ss_pred ccCccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcC
Q 006105 230 ESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAP 309 (661)
Q Consensus 230 ~~~~~~~~~~s~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~P 309 (661)
|...+.-..+|+++. ..++..+|+++|++++|+|+|.+++..|.+|.|+.+||.|
T Consensus 79 -----------------------p~~~~~~~~lf~~l~--~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~P 133 (185)
T PF02141_consen 79 -----------------------PLSDFSLSPLFSCLS--IDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYP 133 (185)
T ss_dssp -------------------------TSHHHHHHHHHS---HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTT
T ss_pred -----------------------CccccchhHHHhcCC--HHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccC
Confidence 222222223444443 6899999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHH
Q 006105 310 LLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFL 352 (661)
Q Consensus 310 L~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~ 352 (661)
+.+.+.|.|+...+-.+| . ++|.|+|+||+-.++.
T Consensus 134 f~w~~~~ip~LP~~l~~~---l-----~aP~P~iiGv~~~~~~ 168 (185)
T PF02141_consen 134 FQWQHVYIPVLPPSLLDY---L-----EAPTPFIIGVHSSFFE 168 (185)
T ss_dssp S---SEEESS--GGGGGG---G-----G-SS-EEEEEECCCHH
T ss_pred cccCceEEeecCHHHHhh---c-----CCCCCEEEEEechhhh
Confidence 999999999998765544 3 4788999999998877
No 8
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=99.23 E-value=8.6e-10 Score=116.02 Aligned_cols=250 Identities=19% Similarity=0.277 Sum_probs=163.4
Q ss_pred eEEEEeeCCCCccceeeCC-CCCCChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCcccccccc
Q 006105 29 FCTIRFDLEQGQLIEDCYP-PGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEIND 107 (661)
Q Consensus 29 icVV~FDle~Gq~vE~~YP-~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~ 107 (661)
|.+|+||...|-+|+.++| ++. +...|=|-|+|-|.| ...+|++|| + +
T Consensus 1 lFl~~FD~k~Gn~i~W~~~~~~i----~L~gVEfKsLPSGlH-----~v~~D~VyF-~--~------------------- 49 (280)
T PF09804_consen 1 LFLVKFDVKKGNTIVWSRPAPDI----DLEGVEFKSLPSGLH-----EVDEDVVYF-V--H------------------- 49 (280)
T ss_pred CEEEEecCCCCcEEEEeccCCCC----ccCCeeEecCCcccc-----cccccEEEE-e--c-------------------
Confidence 4689999999999999999 554 455588999999987 357888885 4 1
Q ss_pred ccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCC-CccCcceeEEEEEeeCCCchh-----hHHHHHHHhcccc
Q 006105 108 KITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDE-RLKRGGEQKSLVILSHGPFSS-----VFRPLLQIMGPLY 181 (661)
Q Consensus 108 ~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~-svkRGy~QKSlVIlS~lPy~~-----lF~~lL~~i~p~y 181 (661)
..+||.++|+|.+.. .-.||..-+||=||...|+-- -|...|+.++..+
T Consensus 50 -------------------------~~~~Gls~F~~~~~~~~~~r~arM~SvGVL~~~~~~~~~~~w~h~~~L~~l~~~~ 104 (280)
T PF09804_consen 50 -------------------------DGYYGLSCFRQNPADEEEERGARMYSVGVLVPPPNGFYGRLWRHAEFLEELARHL 104 (280)
T ss_pred -------------------------CCEEEEEEEEeCCCCcccccCcEEEEEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 367999999999877 899999999999998885432 2455566666666
Q ss_pred cccc--HHHHHHHHHHhcc-----CCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCC
Q 006105 182 FDVG--KKAIEHIASYVSI-----WPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQ 254 (661)
Q Consensus 182 F~~g--~~~LE~a~~~I~~-----WP~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~P~ 254 (661)
...+ ...||+.++.-.. |..|..+ +.. ... .........+. .+.
T Consensus 105 ~~~~~~~~~le~~~e~~~~~~~~~~~~~~~~----------------~~~---~~~----~~~~~~~~~~~------~~~ 155 (280)
T PF09804_consen 105 LKDPGDYSPLEAYWEKNKADENSSSSSPPDS----------------HSR---NRS----LSDATALIPPD------PPL 155 (280)
T ss_pred HhCCCcchHHHHHHHHhcccccccccCCccc----------------ccc---ccc----cccccccCCCc------cCC
Confidence 6443 3678887654432 2222200 000 000 00000000000 011
Q ss_pred ccccccc-hhhhhHhhhHHHHHHHHHHHhCCcEEEECCCh-hHHHHHHHHHHHhhcCCCCCC---------ccccccccc
Q 006105 255 GLFHDSD-LFGTFRGLLLQLWVLWELLLIGEPILVIAPTP-PQCCEAVASLVSLIAPLLCSI---------DFRPYFTIH 323 (661)
Q Consensus 255 ~~~~~~~-lf~~f~~~l~~L~~LWEllLt~epIlVia~sP-~~~S~aVlaL~SLI~PL~y~g---------d~RPYfTIh 323 (661)
...|.+. |-..+..+-+.|-.||++.|+.|+|||+++-| ..||..|.++.- ++=++... ..+|.|+|.
T Consensus 156 ~~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~pv~~~c~~vY~ls~-Ls~ip~~~~~~~~~~~~~~~Plf~Ig 234 (280)
T PF09804_consen 156 SPYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPPVEVACSFVYCLSL-LSSIPQSLSGSLPPELQRSQPLFNIG 234 (280)
T ss_pred CCCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCChHHHHHHHHHHHh-hccCCccccccCCcccccccceeEEe
Confidence 1122211 11112223577999999999999999998776 777777755443 33344332 379999987
Q ss_pred CcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCC
Q 006105 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (661)
Q Consensus 324 D~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (661)
=.|-..+.+.. ..++|.-+|--.|+..-+-|+..|.+....
T Consensus 235 v~Di~~L~~~~----~~g~IAcTtD~IL~~K~~LYDv~V~l~~~~ 275 (280)
T PF09804_consen 235 VHDIDYLESEV----KAGWIACTTDEILLEKPELYDVLVDLPPNS 275 (280)
T ss_pred ecchHHHhhcc----CCcEEEEccHHHHhcCccceEEEEECCCCc
Confidence 77666665422 128999999999998889999999997653
No 9
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=99.15 E-value=2.6e-09 Score=113.66 Aligned_cols=251 Identities=18% Similarity=0.264 Sum_probs=181.0
Q ss_pred CChhhhHhHhheeEEEEeeCC----CCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCce--eEEEEEeccCC
Q 006105 17 PDPERMQRWVVAFCTIRFDLE----QGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHD--CIFFFRFQRHK 90 (661)
Q Consensus 17 ~~~~~~~~Wv~~icVV~FDle----~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~D--t~F~Frir~~~ 90 (661)
..|+.-..-..++|+|..--. .-|.|.++||++.-.++-.+.|.--||||.+--. .-..+ -.|+|=+.+.
T Consensus 5 ~~~~~~~~lfe~f~evs~pk~~~~~~~P~v~~QFP~d~~dee~lkaipqFCFP~~~e~~---~vs~~~~q~FsFvLTd~- 80 (425)
T KOG3569|consen 5 RERQGVRTLFEYFVEVSLPKKPGNTYLPEVTYQFPPDFQDEEILKAIPQFCFPDAVEWL---PVSEYGSQTFSFVLTDE- 80 (425)
T ss_pred hhccCcccceeEEEEEecCCCCCCccCccchhhCCCccccHHHHhhchhccCCcccccc---cccccccceEEEEEEcC-
Confidence 345555666778899887755 4478999999987766667889999999985210 11222 4677776553
Q ss_pred CCCCCCCCCccccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeEEEEEeeCCCchhhH
Q 006105 91 NLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVF 170 (661)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~svkRGy~QKSlVIlS~lPy~~lF 170 (661)
++..=|||+ | ++ +..++.+||+|++|.+++|
T Consensus 81 ----------------------------------------dg~rrFGfC--R------L~-~G~~~c~CilS~l~wF~vF 111 (425)
T KOG3569|consen 81 ----------------------------------------DGSRRFGFC--R------LP-SGLPECYCILSRLGWFGVF 111 (425)
T ss_pred ----------------------------------------CCceeeeeE--e------cC-CCCCeEEEEeeCCChHHHH
Confidence 234558888 3 33 3388999999999999999
Q ss_pred HHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccc-eeEEEeCCCCCCCCCccCccccccccccCCCCCCC
Q 006105 171 RPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGN-AMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYN 249 (661)
Q Consensus 171 ~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~P~pg~~l~Lp~lg-~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~ 249 (661)
+.+|..++..-=..-+..++-....+-.-|-|.||+++.|-... ..-..-||....+|
T Consensus 112 ~KlLn~v~~~~~~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~e~ipd~r~Lp--------------------- 170 (425)
T KOG3569|consen 112 SKLLNEVEDRRGISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGTEVIPDTRPLP--------------------- 170 (425)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCceEECcCCCCCC---------------------
Confidence 99999887654333345556666666667999999988876543 11122233321111
Q ss_pred CCCCCccccccchhhhhHhh-hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchh
Q 006105 250 QSIPQGLFHDSDLFGTFRGL-LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFA 328 (661)
Q Consensus 250 ~~~P~~~~~~~~lf~~f~~~-l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~dF~ 328 (661)
+.-...|+-..|..+ ..++..|+-.+|..++|+++|.--+..|..+.|.++|+.|......|.|-+.-|--|+-
T Consensus 171 -----S~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~v 245 (425)
T KOG3569|consen 171 -----SILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYV 245 (425)
T ss_pred -----CcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHh
Confidence 112234444455443 68899999999999999999999999999999999999999999999999998876652
Q ss_pred hhhcccCCCCCCCeEEecchHHHHHh
Q 006105 329 HLNSLQEGDTFPPMVLGVTNLFFLKA 354 (661)
Q Consensus 329 ~l~~~~~~~~~p~~IlGVTNPfF~k~ 354 (661)
-+|.|++|||---+.++.
T Consensus 246 --------CaPmPyLIGv~~s~lerv 263 (425)
T KOG3569|consen 246 --------CAPMPYLIGVHSSLLERV 263 (425)
T ss_pred --------cCCcceeecchHHHHHHH
Confidence 367899999999888754
No 10
>KOG4704 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=4.5e-05 Score=80.89 Aligned_cols=266 Identities=19% Similarity=0.182 Sum_probs=159.3
Q ss_pred hheeEEEEeeCCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCcccccc
Q 006105 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEI 105 (661)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~ 105 (661)
|.||.+.+||-..|-.||.+||.+. +.++|-|.+||-|.|- -..|++| ||+.+.-.. +
T Consensus 3 i~~i~l~~fd~k~g~~Vew~~p~di----dlegIEfks~psGihe-----~~~d~I~-Fr~~~~l~~-----~------- 60 (431)
T KOG4704|consen 3 IQAIVLATFDAKEGYNVEWYYPGDI----DLEGIEFKSFPSGIHE-----LDNDTIF-FRFQDQLCL-----S------- 60 (431)
T ss_pred eeEEEeeeeccccCceEEEeccccc----cccceeeecccccccc-----ccCceEE-EEecchhhh-----h-------
Confidence 5799999999999999999999996 5778999999999763 3446776 587653100 0
Q ss_pred ccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeee------ecCCCccCccee-EEEEEee--CCCchhhHHHHHHH
Q 006105 106 NDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQ------RHDERLKRGGEQ-KSLVILS--HGPFSSVFRPLLQI 176 (661)
Q Consensus 106 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ------~kD~svkRGy~Q-KSlVIlS--~lPy~~lF~~lL~~ 176 (661)
....-..+-||-.+|-| --|.+.-||-+| +|+-|+. ..-...+.+.+.+-
T Consensus 61 ---------------------~~~k~~~~~~~~~~F~~~~f~il~~d~~~~r~~vkm~s~g~~i~~~~~l~~~k~hF~e~ 119 (431)
T KOG4704|consen 61 ---------------------VFSKLQHPSFERSAFFTSVFLILSDDINFGRAVVKMGSTGLYIANGLSLATLKYHFGED 119 (431)
T ss_pred ---------------------hhhcccCcccccchHhhhhhhhccccchhhhhhheecceEEEeccchhHHHHHHHHHHH
Confidence 01112334566666666 368889999444 4554444 34456666677776
Q ss_pred hcccccccc-HHHHHHHHHHhccCC--CCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCC
Q 006105 177 MGPLYFDVG-KKAIEHIASYVSIWP--SPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIP 253 (661)
Q Consensus 177 i~p~yF~~g-~~~LE~a~~~I~~WP--~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~P 253 (661)
+-..|-..+ ..-|++...+...-- .+..++...+ ++ .++ ++.+.+ +. |
T Consensus 120 ~~h~ya~~~~~Shl~s~~rD~~k~l~~~~~~~e~~~~-~~------~l~---------s~~~~~-------~~------~ 170 (431)
T KOG4704|consen 120 ASHTYASEKCTSHLLSDSRDFFKSLQTSAVNLEFDSL-FE------KLQ---------SNKFAI-------LG------A 170 (431)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhccccccccCch-hh------hcc---------cceEEe-------cC------c
Confidence 666665443 355666665554321 1111110000 00 000 000000 00 0
Q ss_pred Cccccccchhhhh-HhhhHHHHHHHHHHHhCCcEEEECCC-h--hHHHHHHHHHHHhhcCCCC------CCccccccccc
Q 006105 254 QGLFHDSDLFGTF-RGLLLQLWVLWELLLIGEPILVIAPT-P--PQCCEAVASLVSLIAPLLC------SIDFRPYFTIH 323 (661)
Q Consensus 254 ~~~~~~~~lf~~f-~~~l~~L~~LWEllLt~epIlVia~s-P--~~~S~aVlaL~SLI~PL~y------~gd~RPYfTIh 323 (661)
...-|...--..| ..+-+.+.-||+..|+.++||+++|- + -.|-.+|.+++++ +=++- -.|-.|+|++.
T Consensus 171 ~~~~h~~~y~~~~~~~lGp~i~~LwKfaLlrkRILi~sp~~~~~~~c~~~iyc~~~i-~~~s~~~Ig~~~sd~kPff~V~ 249 (431)
T KOG4704|consen 171 NSKEHSQSYATILLDHLGPAIYCLWKFALLRKRILIISPHDDQLYSCIDMIYCLSSI-KRSSDASIGILLSDLKPFFSVG 249 (431)
T ss_pred hhhhhhHHHHHHHHHHhccHHHHHHHHHHHhheEEEEeCCCCceeehhhhHHHHHhh-hcCCccccCcccccCCceEEEE
Confidence 0001111111112 22346799999999999999999987 3 2343566555543 22221 24779999998
Q ss_pred CcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCC
Q 006105 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSP 367 (661)
Q Consensus 324 D~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~ 367 (661)
-.|-.-+-+ ....-++|.-+|--.++..-+-.+.++...+.
T Consensus 250 ~adi~~les---~~~e~gyVAcTte~Ill~K~elYD~~v~~~~~ 290 (431)
T KOG4704|consen 250 LADISTLES---NDLEEGYVACTTETILLSKSELYDLAVYWPDN 290 (431)
T ss_pred cccccchhh---cccccceEEechHHHHhcchhhheeEEeCCCC
Confidence 776644433 23446799999999999998888888887654
No 11
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=97.85 E-value=4.7e-05 Score=88.12 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchH
Q 006105 270 LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNL 349 (661)
Q Consensus 270 l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNP 349 (661)
+.--...|-++++...||+-+.+-..+|-.|+|.+.||.||.|--...|.+.-.-+-=..+. -++.++||||-.-
T Consensus 306 vd~cL~VlT~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLL-----LAPTPfiIGVPaS 380 (1588)
T KOG3570|consen 306 VDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLL-----LAPTPYIIGVPAS 380 (1588)
T ss_pred HHHHHHHHHHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHh-----cCCCCeEeccchH
Confidence 34456789999999999999999999999999999999999999999999876654332232 5788999999999
Q ss_pred HHHHhh
Q 006105 350 FFLKAL 355 (661)
Q Consensus 350 fF~k~~ 355 (661)
||.-..
T Consensus 381 Ff~ykk 386 (1588)
T KOG3570|consen 381 FFLYKL 386 (1588)
T ss_pred Hhhhhh
Confidence 997554
No 12
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=96.50 E-value=0.021 Score=68.03 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=110.5
Q ss_pred ccCcceeEEEEEeeCCCchhhHHHHHHHhccccccccHHHHHHHHHHhccC--CCCCCCCceeecccceeEEEeCCCCCC
Q 006105 149 LKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIW--PSPVPGKLMELPIGNAMLKVNLPPAHS 226 (661)
Q Consensus 149 vkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~W--P~P~pg~~l~Lp~lg~vl~~~iP~~~~ 226 (661)
.+-.|.-+|||++|+..-+.-|+.+|.-|...|-...-..++.+..+|... -.|.-|+..... +|+-+.+.
T Consensus 97 ~t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~~~~~~~~~~li~~l~~~l~~~~s~~~~~~~t-l~~~~~~~------ 169 (1732)
T KOG1090|consen 97 KTLNFKAVSIVLISQNFHPKAFKEILLEISNDLRTPEFSSSSELIRFLTYELVEEGSTIEIRTKT-LHVELGFE------ 169 (1732)
T ss_pred hhhcccceEEEEEecccCHHHHHHHHHHHHHHhcCcccccHHHHHHHhheEEeecCCCCceEEEE-eecccCce------
Confidence 445599999999999999999999998776666544334455555555422 122222211111 11000000
Q ss_pred CCCccCccccccccccCCCCCCCCCCCCccccccchhhhhHh-hhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHH
Q 006105 227 LPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRG-LLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVS 305 (661)
Q Consensus 227 ~p~~~~~~~~~~~s~~~p~~~~~~~~P~~~~~~~~lf~~f~~-~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~S 305 (661)
..|.+ |+ ..-|.--+|.. -+.++..|-.+||+.-+||+.+.+-=..|..+-|++|
T Consensus 170 ---------------l~p~~------p~---tg~~v~~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~~~~ls~~~~ai~s 225 (1732)
T KOG1090|consen 170 ---------------LIPIS------PV---TGKDVAMLFKMLGFQNVIKIIHALLSDCRIVLASSSLMRLSRCQNAILS 225 (1732)
T ss_pred ---------------eeecC------CC---CCccHHHHHHHhhhhHHHHHHHHHHhcceEeeehhHHHHHHHHHHHHHH
Confidence 01111 11 11111123332 2688999999999999999999998888999999999
Q ss_pred hhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEE
Q 006105 306 LIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIV 362 (661)
Q Consensus 306 LI~PL~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil 362 (661)
|+.|+.|-..|.|.+. ...+|+. .+|.|+|+||-.-|-..--+ .+|+
T Consensus 226 llypf~y~h~~v~ilp---~~l~evl-----~sptpfl~gv~s~~~t~~~d--e~iv 272 (1732)
T KOG1090|consen 226 LLYPFEYVHSCVTILP---DSLAEVL-----ESPTPFLIGVLSEFVTSFGD--ENIV 272 (1732)
T ss_pred Hhcchheeeeeeeecc---cHHHHHh-----cCCCceeehhhHHHhhhcCC--ceEE
Confidence 9999999887766553 3455554 47889999999987655443 4443
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=94.48 E-value=0.17 Score=59.91 Aligned_cols=271 Identities=17% Similarity=0.171 Sum_probs=152.0
Q ss_pred CChhhhHhHhheeEEEEeeCCCCccce----------------eeCCCCC-CChhhhhhcccccCCCccccccCcccCce
Q 006105 17 PDPERMQRWVVAFCTIRFDLEQGQLIE----------------DCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHD 79 (661)
Q Consensus 17 ~~~~~~~~Wv~~icVV~FDle~Gq~vE----------------~~YP~~~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~D 79 (661)
.+-+.|.+...|+++..=|++-|-... .-||.++ ..+=++..+|.++.|-+..++-...|.+
T Consensus 61 ~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnPfd~~~~~ml~mP~gl~frtq~~~~E- 139 (1295)
T KOG2080|consen 61 LPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNPFDKLDFFMLCMPKGLGFRTQDDVPE- 139 (1295)
T ss_pred CccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCcccccceeeeccccccceeccCCCCc-
Confidence 445788888888888777776664332 2377776 6677899999999999976652222222
Q ss_pred eEE-EEEeccCCCCCCCCCCC---ccc-----------------cc-cccccCcchhHHHHHhhhccCCCCCCCCceE--
Q 006105 80 CIF-FFRFQRHKNLPQGNVTP---SEI-----------------TE-INDKITSSELTEEKLLKRSKSFSSSKGSRYF-- 135 (661)
Q Consensus 80 t~F-~Frir~~~~~~~~~~~~---~~~-----------------~~-~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~l-- 135 (661)
-+| +|-+.+..+....+.+. .+. ++ ++.-.+.|++.-+ .+. + .-..++..+
T Consensus 140 p~FhSfiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~~~s~sd~~-l~s---s-ldrsep~~v~v 214 (1295)
T KOG2080|consen 140 PQFHSFIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLEALSDSDKD-LTS---S-LDRSEPTEVVV 214 (1295)
T ss_pred hhhheeeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhhcCccchhh-ccC---c-cccCCCceeee
Confidence 233 24444433333321110 000 01 1111111111111 100 1 111122222
Q ss_pred EE--EEeeeeecCCCccCcceeEEEEEeeCCCchhhHHHHHHHhccccccccH--HHHHHHHHHhc-cCCCCCCCCceee
Q 006105 136 YG--YVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGK--KAIEHIASYVS-IWPSPVPGKLMEL 210 (661)
Q Consensus 136 YG--~v~fRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~--~~LE~a~~~I~-~WP~P~pg~~l~L 210 (661)
-| +.+ .|.+-.-=|+-|||++++.+||-.--+.+|..+...--..+. -.||....||. .-|-|.||..+.
T Consensus 215 ~g~~~~~----ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~- 289 (1295)
T KOG2080|consen 215 LGRVKNS----YDISRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLK- 289 (1295)
T ss_pred echhhhc----cccccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHHHhhhheecccCCCCceee-
Confidence 11 233 344444569999999999999988777777766655544433 35777666654 567777777332
Q ss_pred cccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEEC
Q 006105 211 PIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIA 290 (661)
Q Consensus 211 p~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia 290 (661)
|..+...-. ...++ ..-.|+.+|-.-.+|..+ -+.++..|++|||+.--||.++
T Consensus 290 --------vy~~~~~ii-------------~q~~~---a~elpL~dfplR~~F~~l--gVenviql~tCvLle~qill~s 343 (1295)
T KOG2080|consen 290 --------VYGVYDPII-------------CQRPF---ADELPLDDFPLREYFELL--GVENVIQLFTCVLLENQILLYS 343 (1295)
T ss_pred --------EEecCCccc-------------ccCCC---CcccccccHhHHHHHHHh--cchHHHHHHHHHHhhhHHHhhh
Confidence 211111000 00000 111122222211222211 2688999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 006105 291 PTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHD 324 (661)
Q Consensus 291 ~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD 324 (661)
.+-...--..-++.+|+.|+.....|-|.+.-.-
T Consensus 344 ~dyqrlm~v~e~itsllfpf~w~hvy~pilpa~l 377 (1295)
T KOG2080|consen 344 QDYQRLMTVAECITSLLFPFQWQHVYVPILPASL 377 (1295)
T ss_pred hhHHHHHHHHhhhhhhccccccccccccccHHHH
Confidence 9977766666688999999999999988875443
No 14
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0049 Score=68.05 Aligned_cols=114 Identities=14% Similarity=0.030 Sum_probs=89.1
Q ss_pred HHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHhhccHHH-HhccCCcchhhhHHHHHHHHHHHHHHHhcCCCC
Q 006105 535 DLYRRFLKGPNFMP----WFQRRRAAAEQEQHRLWRQARMRTDIQQ-LIAKMSELESVDTFNAVERHLIQEIQQSGCAAT 609 (661)
Q Consensus 535 ~LYrrF~~spnF~~----Wl~~r~~~~~~~~~~l~~~a~~~~d~~~-~~~~~~Eve~vD~~~~l~~~l~~~~~~~~~~~~ 609 (661)
-.|++|-.|-||.+ ||-++...+..++.-+|-.++|.+|+-- -..-+.-+|+||++++|..-| .-+ +
T Consensus 213 ~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL----~~c----~ 284 (565)
T KOG2432|consen 213 VELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPL----IYC----P 284 (565)
T ss_pred eeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcc----eeC----C
Confidence 34999999999999 9999999999999999999999999843 344566799999999998844 212 2
Q ss_pred ChHHHHHHHHHHHHHHHhcCcHH-HHHHHhcCchhhhhccCCCCccCC
Q 006105 610 DSAEICQKLKGDLLAVFNVLPKD-VQQLLLFNPERAALLQRTPELTKP 656 (661)
Q Consensus 610 ~~~~~~~~l~~~l~~i~~~lp~d-lq~~l~~~~~~~~~~~~~~~~~~~ 656 (661)
+....+.-.-++...+.+...+| +.++..+||-=+..|+.-|-+.++
T Consensus 285 dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpFF~K~L~~wPHilrv 332 (565)
T KOG2432|consen 285 DFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPFFRKALAHWPHILRV 332 (565)
T ss_pred CCCceeeeccHHHHHHHhccCCCCceEEecCCHHHHHHHhcCcceeee
Confidence 23334555556666777777888 889999999988888877765543
No 15
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms]
Probab=90.54 E-value=1.1 Score=54.93 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHH
Q 006105 271 LQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLF 350 (661)
Q Consensus 271 ~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPf 350 (661)
.++..|-+++||...|+|-+..|..|...+=|.+|++.||..-+.|.|--... |.++. .+|-++|+||---|
T Consensus 33 e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl~---la~vl-----~aP~pf~~g~~s~~ 104 (1020)
T KOG2127|consen 33 ENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPLG---LADVL-----HAPLPFLMGVDSRY 104 (1020)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccch---hcccc-----cCCcccccCCChhh
Confidence 66888999999999999999999999999999999999999887666655444 43333 46778999999999
Q ss_pred HHHh
Q 006105 351 FLKA 354 (661)
Q Consensus 351 F~k~ 354 (661)
|.-.
T Consensus 105 f~~~ 108 (1020)
T KOG2127|consen 105 FELY 108 (1020)
T ss_pred hhcc
Confidence 9887
No 16
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=89.34 E-value=1.3 Score=38.90 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=42.2
Q ss_pred hHhheeEEEEeeCCCC-------ccceeeCCCCCC-ChhhhhhcccccCCCccccccCcccCceeEEEEEecc
Q 006105 24 RWVVAFCTIRFDLEQG-------QLIEDCYPPGCL-TQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQR 88 (661)
Q Consensus 24 ~Wv~~icVV~FDle~G-------q~vE~~YP~~~L-s~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~ 88 (661)
+-+.+++||+-|.+.+ +.|-..||+... ......+|+..+||++..............|.|-+.+
T Consensus 3 rl~d~f~vvg~~~~~~~~~~~~~p~il~~yP~~~~~~~~~~~~i~~FCfP~G~~~~~~~~~~~~~~f~FvLT~ 75 (89)
T smart00800 3 RLFDYFVVVGLDSDTGPLGRSYKPEILQRYPEKDEEDFPLPDSIPLFCFPEGLLFVTQKSSKDPQFFSFVLTD 75 (89)
T ss_pred cceeEEEEEeCCCCCCCcCcccceEEEeECCCCCCccCCCccCCCeeECCCCeEeecccCCCCCcEEEEEEEC
Confidence 4567899999988743 567788998532 2234567888899999654311122333667777754
No 17
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=75.11 E-value=5 Score=32.94 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=28.2
Q ss_pred ccceeeCCCCC--CChhhhhhcccccCCCccccccCcccCceeEEEEEecc
Q 006105 40 QLIEDCYPPGC--LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQR 88 (661)
Q Consensus 40 q~vE~~YP~~~--Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~ 88 (661)
+.|-..||+.. -......+|+..+||++....... ....+.|.|-+.+
T Consensus 2 p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~ 51 (65)
T PF03456_consen 2 PEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQS-RPPPQFFSFVLTD 51 (65)
T ss_dssp -EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-
T ss_pred CEEEEECCCCccccCCCChhhCCccCCCCCcEeeccc-cCCCeEEEEEEEC
Confidence 45778899954 345567889999999997654221 2345788887755
No 18
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=62.08 E-value=7.3 Score=32.21 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCC
Q 006105 465 EILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGP 544 (661)
Q Consensus 465 ~iLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~sp 544 (661)
..||.-|+..=.+.|.=...|+...... +. .-|+.+.|+++... +-..+|+.|++|-
T Consensus 3 ~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~--------~~--~~F~~~~Fl~~~~~-------------~~~~Fl~~f~~TQ 59 (68)
T PF03455_consen 3 DQIREAFLRFFVSLLGNYREYLIYDRQS--------PR--VIFDKEAFLKSRPK-------------ESRPFLKAFLETQ 59 (68)
T ss_dssp THHHHHHHHHHHHHHGGGGGG-----------------------HHHHS--SSH-------------HHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CC--ceeccHHHHhcCCh-------------hHhHHHHHHHHHH
Confidence 4678888877777777777777554221 11 57999999998211 1248999999999
Q ss_pred CChHHHHHH
Q 006105 545 NFMPWFQRR 553 (661)
Q Consensus 545 nF~~Wl~~r 553 (661)
.|..|++.|
T Consensus 60 ~F~~Fi~~R 68 (68)
T PF03455_consen 60 MFEQFIEER 68 (68)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHhcC
Confidence 999999876
No 19
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=58.44 E-value=14 Score=30.53 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCC
Q 006105 466 ILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPN 545 (661)
Q Consensus 466 iLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spn 545 (661)
.||.-|+..=.+.+.-...|+..+ .+.+....-|+.+.||++.+. +...+|+.|+.|-.
T Consensus 3 ~Ir~aFl~~f~~l~~~Y~~~l~~~--------~~~~~~~~~F~~~~Fl~~~~~-------------~~~~Fl~~~~~TQ~ 61 (69)
T smart00801 3 EIREAFLRFFVNLFGGYRNFLREL--------RKEPGPVITFDKESFLKSRPS-------------SERPFLSKFLETQM 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCCCceeCHHHHHHhCCc-------------hhhHHHHHHHHHhh
Confidence 566666666445555555555421 012234567999999997322 22579999999999
Q ss_pred ChHHHHHH
Q 006105 546 FMPWFQRR 553 (661)
Q Consensus 546 F~~Wl~~r 553 (661)
|...++.|
T Consensus 62 F~~Fi~~r 69 (69)
T smart00801 62 FSQFIEER 69 (69)
T ss_pred HHHHHhcC
Confidence 98887654
No 20
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.82 E-value=42 Score=32.91 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=60.2
Q ss_pred HHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHH----HHHh
Q 006105 279 LLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLF----FLKA 354 (661)
Q Consensus 279 llLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~IlGVTNPf----F~k~ 354 (661)
+---+.+|.++|.++..+.++...|..--..+...|-+-||| ...+-.++.+.-+...+-=+++|.-.|- ..+.
T Consensus 44 ~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~ 121 (172)
T PF03808_consen 44 AEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH 121 (172)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 334568999999999999999999999998999999999999 3334444443222223334789999993 3333
Q ss_pred hcCCC--eEEEcCCC
Q 006105 355 LRKIP--HIVSVGSP 367 (661)
Q Consensus 355 ~~~WP--hil~l~~~ 367 (661)
.+..+ .++.+|..
T Consensus 122 ~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 122 RQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHCCCCEEEEECch
Confidence 34444 45666643
No 21
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=43.32 E-value=82 Score=29.92 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhc
Q 006105 614 ICQKLKGDLLAVFNVLPKDVQQLLLF 639 (661)
Q Consensus 614 ~~~~l~~~l~~i~~~lp~dlq~~l~~ 639 (661)
....+...+..++..||++-++++.+
T Consensus 94 ~~~~~~~~l~~~l~~L~~~~r~v~~l 119 (165)
T PRK09644 94 VAKNSYEKLIQIIHTLPVIEAQAILL 119 (165)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 34456678899999999999999764
No 22
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=43.15 E-value=26 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHHHHhcCcHHHHHH
Q 006105 609 TDSAEICQKLKGDLLAVFNVLPKDVQQL 636 (661)
Q Consensus 609 ~~~~~~~~~l~~~l~~i~~~lp~dlq~~ 636 (661)
.+.+|+.++|+..|+. ...||.||+.+
T Consensus 24 lt~~Ell~~Lk~~L~~-~~~LP~dL~~~ 50 (83)
T PF12095_consen 24 LTPEELLEKLKEWLQN-QDDLPPDLAKF 50 (83)
T ss_dssp E-HHHHHHHHHHHHHH-TTTS-HHHHH-
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHhC
Confidence 3579999999999999 99999999975
No 23
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.23 E-value=98 Score=30.35 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=57.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcc--hhhhhcccCCCCCCCeEEecchHHHHH----hhc
Q 006105 283 GEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQ--FAHLNSLQEGDTFPPMVLGVTNLFFLK----ALR 356 (661)
Q Consensus 283 ~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~d--F~~l~~~~~~~~~p~~IlGVTNPfF~k----~~~ 356 (661)
+.+|.++|.+|..+..++..+...-..+...|.+-|||.--+.+ ...++. ..+-=+++|.-.|--++ ..+
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~----~~pdiv~vglG~PkQE~~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA----SGADILFVGLGAPKQELWIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHH
Confidence 78999999999999999999999988898889899999754422 222221 22333789999994433 333
Q ss_pred C--CCeEEEcCC
Q 006105 357 K--IPHIVSVGS 366 (661)
Q Consensus 357 ~--WPhil~l~~ 366 (661)
+ -+.++.+|.
T Consensus 122 ~l~~~v~~~vG~ 133 (171)
T cd06533 122 RLPVPVAIGVGG 133 (171)
T ss_pred HCCCCEEEEece
Confidence 3 355666664
No 24
>TIGR03209 P21_Cbot clostridium toxin-associated regulator BotR. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.
Probab=36.19 E-value=1.1e+02 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHhc
Q 006105 618 LKGDLLAVFNVLPKDVQQLLLF 639 (661)
Q Consensus 618 l~~~l~~i~~~lp~dlq~~l~~ 639 (661)
....|..++..||++-++|+.+
T Consensus 97 ~~~~l~~~l~~Lp~~~r~v~~l 118 (142)
T TIGR03209 97 LEFEFNDLISILPNKQKKIIYM 118 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4556889999999999999765
No 25
>PHA02414 hypothetical protein
Probab=35.70 E-value=85 Score=28.63 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=33.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCcHHH
Q 006105 584 LESVDTFNAVERHLIQEIQQSGCAATDSAEICQKLKGDLLAVFNVLPKDV 633 (661)
Q Consensus 584 ve~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dl 633 (661)
-||=+|+.+++. |+.|+|...--+-....-.+.--..|+.|+.+|.+|+
T Consensus 4 ~~in~Lv~~v~~-ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~ 52 (111)
T PHA02414 4 KEINNLVSQVET-LEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDV 52 (111)
T ss_pred hHHHHHHHHHHH-HHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHh
Confidence 367788888876 6778764422222234445666678999999999997
No 26
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=32.20 E-value=43 Score=28.59 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q 006105 536 LYRRFLKGPNFMPWFQRRRAAAEQ 559 (661)
Q Consensus 536 LYrrF~~spnF~~Wl~~r~~~~~~ 559 (661)
||++-+.||+|-.|-++-++-++.
T Consensus 4 Ly~kLl~SpgFhrfVR~Ih~kVN~ 27 (68)
T PF10906_consen 4 LYRKLLDSPGFHRFVRRIHAKVNG 27 (68)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhC
Confidence 899999999999999988877763
No 27
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=28.05 E-value=2.8e+02 Score=25.63 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHH
Q 006105 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQ 599 (661)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~~ 599 (661)
.=|..||..|+-++| |+.+-+.+++..-+ -.|-+||+--||--+.||.
T Consensus 10 aRye~~F~~~~iD~w------e~rr~mN~l~~~Dl-----------VP~P~ii~aaLrAcRRvND 57 (103)
T cd00923 10 ARYETYFNRPDIDGW------ELRRGLNNLFGYDL-----------VPEPKVIEAALRACRRVND 57 (103)
T ss_pred HHHHHHhCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhhh
Confidence 458889999999999 66666667666444 5788888888887776654
No 28
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=23.82 E-value=3.9e+02 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.3
Q ss_pred CChHHHHHHHHhcCCCcccc
Q 006105 507 FNANEFLSSLQARGVGKFLS 526 (661)
Q Consensus 507 F~~~~FL~sL~~~g~~~~l~ 526 (661)
|..+|-+.+||..|++ +|.
T Consensus 49 ~~~ddvip~Le~~Gv~-qLy 67 (223)
T KOG0570|consen 49 YREDDVIPPLEEQGVP-QLY 67 (223)
T ss_pred cchhccccChhhcChH-hhC
Confidence 5688999999999985 443
No 29
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=23.56 E-value=46 Score=29.32 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.9
Q ss_pred cccccCcchhhhhcc
Q 006105 319 YFTIHDPQFAHLNSL 333 (661)
Q Consensus 319 YfTIhD~dF~~l~~~ 333 (661)
=||..|.+|.++.++
T Consensus 10 RfTe~D~ey~~~~~~ 24 (81)
T PF15320_consen 10 RFTEDDEEYMEYCKR 24 (81)
T ss_pred hccccCHHHHHHHhC
Confidence 389999999999864
No 30
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=21.90 E-value=66 Score=36.59 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=33.4
Q ss_pred hheeEEEEeeCCCCccceeeCCCCCC--ChhhhhhcccccCCCc
Q 006105 26 VVAFCTIRFDLEQGQLIEDCYPPGCL--TQDEELEVAYSSFPDS 67 (661)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~~L--s~~Ek~~Ia~lsFPDs 67 (661)
|+||--.+||...|+.|.|++|++.+ +...-..|...-.|..
T Consensus 5 I~~IFya~F~p~~GpkI~~Q~P~~~i~~~~~~Fd~is~yIIPk~ 48 (428)
T PF06218_consen 5 IHAIFYAEFHPTEGPKIVHQVPEGSIKPSLFNFDSISNYIIPKP 48 (428)
T ss_pred eEEEEEeecCCCCCCEEEEECCcccccccccchhhcccEEecCh
Confidence 78999999999999999999999987 4444455555556664
No 31
>COG4220 Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]
Probab=21.83 E-value=4.7e+02 Score=26.23 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCcHHHHHH
Q 006105 562 HRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQQL 636 (661)
Q Consensus 562 ~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dlq~~ 636 (661)
..-|+=+..+||.++.=.-..+-|+|++=+. .-.+.++.+.|..|+.+.|.-+|+-
T Consensus 77 ~er~rLt~aQad~q~Lkna~~~g~~v~t~~~-------------------~~~ls~ia~~ia~~l~~ipls~qr~ 132 (174)
T COG4220 77 RERHRLTRAQADAQELKNARDSGEVVETAFC-------------------TFVLSRIAREIASILDSIPLSVQRR 132 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-------------------HHHHHHHHHHHHHHHccccHHHHHh
Confidence 3445555556666655444455666665432 1234555666666666666666654
No 32
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=21.73 E-value=78 Score=25.04 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006105 533 WLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTD 573 (661)
Q Consensus 533 w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d 573 (661)
...|||+++|+..-.+|.. .+..+..+.+..+++-....|
T Consensus 3 vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d 42 (59)
T PF05347_consen 3 VLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETD 42 (59)
T ss_pred HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCC
Confidence 5789999998875544444 344555556666665554433
No 33
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.15 E-value=1.6e+02 Score=29.14 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=14.8
Q ss_pred CChHHHHHHHHhcCCCc
Q 006105 507 FNANEFLSSLQARGVGK 523 (661)
Q Consensus 507 F~~~~FL~sL~~~g~~~ 523 (661)
||.-.|.+.|++.|.+.
T Consensus 2 FDT~~~v~~Le~~Gft~ 18 (177)
T PF07798_consen 2 FDTHKFVKRLEAAGFTE 18 (177)
T ss_pred CcHHHHHHHHHHCCCCH
Confidence 88889999999999754
No 34
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=20.76 E-value=2.6e+02 Score=28.42 Aligned_cols=132 Identities=15% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHH---HHHHHHHHHHHHHHHHh---
Q 006105 497 PFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRR---RAAAEQEQHRLWRQARM--- 570 (661)
Q Consensus 497 p~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r---~~~~~~~~~~l~~~a~~--- 570 (661)
|-..+|.|.+=+.++.+..+...+ ...|..||+++-.. ...+..++ ..++++-.|..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~gd---------~~a~~~l~~~y~~~--l~~~a~~~~~~~~~AEDlvQE~fi~l~~~~~ 73 (231)
T PRK11922 5 PASRPPPLSAASDRELVARVLAGD---------EAAFEALMRRHNRR--LYRTARAILRNDAEAEDVVQEAYLRAFRALG 73 (231)
T ss_pred CCCCCCCcCcccHHHHHHHHHcCC---------HHHHHHHHHHHHHH--HHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence 445577788877778777775432 12355555444321 12222222 23444444443332221
Q ss_pred ----hccHHHHhccCCcchhhhHHHHHHHHHHH-HH--HH-----------hcCCCCChHHHHHHHHHHHHHHHhcCcHH
Q 006105 571 ----RTDIQQLIAKMSELESVDTFNAVERHLIQ-EI--QQ-----------SGCAATDSAEICQKLKGDLLAVFNVLPKD 632 (661)
Q Consensus 571 ----~~d~~~~~~~~~Eve~vD~~~~l~~~l~~-~~--~~-----------~~~~~~~~~~~~~~l~~~l~~i~~~lp~d 632 (661)
...+..|+....--.++|.+-+-+++-.. +. .. ....++......+.+...|+.++..||+.
T Consensus 74 ~~~~~~~~~~wL~~iarn~~~d~~Rk~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~l~~~l~~L~~~ 153 (231)
T PRK11922 74 TFRGDASLSTWLSRIVLNEALGRLRRRRRLVNLAEMVMASTIAGGERTPLADPAEDPERAAARREIRALLERAIDALPDA 153 (231)
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhcccccchhcccccccccccccccCcccCChHHHHHHHHHHHHHHHHHHhCCHH
Confidence 23456666555444555554433321000 00 00 00001112334555667799999999999
Q ss_pred HHHHHhc
Q 006105 633 VQQLLLF 639 (661)
Q Consensus 633 lq~~l~~ 639 (661)
-++++.+
T Consensus 154 ~r~i~~l 160 (231)
T PRK11922 154 FRAVFVL 160 (231)
T ss_pred Hhhhhee
Confidence 9999865
No 35
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=20.28 E-value=2.7e+02 Score=33.02 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=53.2
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH-------HH--HHHh
Q 006105 500 DPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRL-------WR--QARM 570 (661)
Q Consensus 500 ~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l-------~~--~a~~ 570 (661)
.|...-|-..+.+|..|+.+|+..---.|..| -..|.+++.|++++- |- .+..
T Consensus 311 rtG~~lP~~iQq~m~~lr~~~Le~vGifRksG------------------vksRIk~Lrq~lE~~~~~~~~~~d~~~~~D 372 (674)
T KOG2200|consen 311 RTGQPLPLSIQQAMRYLRERGLETVGIFRKSG------------------VKSRIKNLRQMLEAKFYNGEFNWDSQSAHD 372 (674)
T ss_pred cCCCcCcHHHHHHHHHHHHhCccccceeeccc------------------HHHHHHHHHHHHhhcccCcccccchhhhhH
Confidence 56677799999999999999863111112223 245666666666652 21 3555
Q ss_pred hccH-HHHhccCCc----chhhhHHHHHHHHHH
Q 006105 571 RTDI-QQLIAKMSE----LESVDTFNAVERHLI 598 (661)
Q Consensus 571 ~~d~-~~~~~~~~E----ve~vD~~~~l~~~l~ 598 (661)
-||+ .+|.++-.| ||...-|+.|.+.+.
T Consensus 373 vAdlLKqffRdLPePL~t~k~~~aF~~i~~~~p 405 (674)
T KOG2200|consen 373 VADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVP 405 (674)
T ss_pred HHHHHHHHHHhCCcccchhhHHHHHHHHHhcCc
Confidence 5676 668888776 677788888877443
Done!