Query 006105
Match_columns 661
No_of_seqs 163 out of 226
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 99.9 8.2E-24 2.8E-28 229.2 21.7 242 26-355 14-257 (391)
2 2kwv_A RAD30 homolog B, DNA po 30.1 17 0.00059 27.6 1.1 25 624-649 19-43 (48)
3 3ghg_A Fibrinogen alpha chain; 26.6 52 0.0018 36.6 4.5 19 609-627 172-190 (562)
4 2krx_A ASL3597 protein; struct 22.9 47 0.0016 28.8 2.6 28 609-636 24-52 (94)
5 1v54_E Cytochrome C oxidase po 16.9 1.7E+02 0.0057 26.0 4.9 47 535-598 13-59 (109)
6 4aqn_A Pesticin; toxin, bacter 16.1 2.9E+02 0.0098 29.2 7.2 55 508-564 290-351 (357)
7 2p6v_A Transcription initiatio 15.1 3E+02 0.01 24.5 6.1 57 585-642 14-76 (114)
8 3v42_A Folliculin; tumor suppr 14.8 1.9E+02 0.0066 28.7 5.4 40 271-311 19-58 (226)
9 2y69_E Cytochrome C oxidase su 14.0 2.2E+02 0.0075 26.6 5.1 82 535-633 56-147 (152)
10 2afr_A Cobalamin biosynthesis 13.8 1.1E+02 0.0039 30.5 3.4 32 273-308 123-154 (231)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.2e-24 Score=229.24 Aligned_cols=242 Identities=16% Similarity=0.209 Sum_probs=178.9
Q ss_pred hheeEEEEee--CCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCceeEEEEEeccCCCCCCCCCCCcccc
Q 006105 26 VVAFCTIRFD--LEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEIT 103 (661)
Q Consensus 26 v~~icVV~FD--le~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~ 103 (661)
..|+|+|.=- .+.++.|...||++.-.++--+.|...+|||+.... +.......|+|=+.+.
T Consensus 14 f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~--~~~~~~~~fsFVLTd~-------------- 77 (391)
T 3tw8_A 14 FDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERV--SQNQVGQHFTFVLTDI-------------- 77 (391)
T ss_dssp CSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHH--GGGCCSEEEEEEEECT--------------
T ss_pred EEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccC--ccCCCCceEEEEEecC--------------
Confidence 3566776553 456799999999975444345679999999997532 1123357788877552
Q ss_pred ccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeEEEEEeeCCCchhhHHHHHHHhcccccc
Q 006105 104 EINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFD 183 (661)
Q Consensus 104 ~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~ 183 (661)
++...|||+.- +. +.||++||+||+||+++|+.+|..+.+.|++
T Consensus 78 ---------------------------dG~r~yg~Cr~----~~-----~~~k~icilS~lp~f~~F~k~L~~l~~~~~~ 121 (391)
T 3tw8_A 78 ---------------------------ESKQRFGFCRL----TS-----GGTICLCILSYLPWFEVYYKLLNTLADYLAK 121 (391)
T ss_dssp ---------------------------TSCEEEEEEEE----CT-----TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEEEEc----cC-----CCceEEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence 35678999852 21 3579999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchh
Q 006105 184 VGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLF 263 (661)
Q Consensus 184 ~g~~~LE~a~~~I~~WP~P~pg~~l~Lp~lg~vl~~~iP~~~~~p~~~~~~~~~~~s~~~p~~~~~~~~P~~~~~~~~lf 263 (661)
.+...||+++++|.+||-|.||++++++..+. ++ .|.....| . .+ ...+...||
T Consensus 122 ~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~~-~~--~P~~~~Lp----------------~------~~-~~~~~~~Lf 175 (391)
T 3tw8_A 122 ELENDLNETLRSLYNHPVPKANTPVNLSVHSY-FI--APDVTGLP----------------T------IP-ESRNLTEYF 175 (391)
T ss_dssp TCHHHHHHHHHHHHHSCCCCSCC-------------------CCC----------------C------BT-TSHHHHHHH
T ss_pred CCchHHHHHHHHHhhCCCCCCCCeEEEeccce-ee--CCCCCCCC----------------C------CC-CCCCHHHHH
Confidence 88889999999999999999999988877542 21 23211111 0 01 113344566
Q ss_pred hhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeE
Q 006105 264 GTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMV 343 (661)
Q Consensus 264 ~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYfTIhD~dF~~l~~~~~~~~~p~~I 343 (661)
+++. ..++..||+++|++++|||++.+++.+|.+|.|+++||.|+.|.+.|.|+++.|..|| . .+|.++|
T Consensus 176 ~~L~--~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~---l-----~aP~Pfi 245 (391)
T 3tw8_A 176 VAVD--VNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDY---C-----CAPMPYL 245 (391)
T ss_dssp HHSC--HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGG---G-----GCSSCEE
T ss_pred HhCC--HHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcCcccCcceEeecCHHHHhH---h-----cCCCCEE
Confidence 6664 6999999999999999999999999999999999999999999999999999998776 3 4788999
Q ss_pred EecchHHHHHhh
Q 006105 344 LGVTNLFFLKAL 355 (661)
Q Consensus 344 lGVTNPfF~k~~ 355 (661)
+||++.++.+..
T Consensus 246 iGv~~~~~~~~~ 257 (391)
T 3tw8_A 246 IGIHSSLIERVK 257 (391)
T ss_dssp EEEETTTHHHHH
T ss_pred EEecchhHHHhh
Confidence 999999987654
No 2
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=30.10 E-value=17 Score=27.56 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=19.6
Q ss_pred HHHhcCcHHHHHHHhcCchhhhhccC
Q 006105 624 AVFNVLPKDVQQLLLFNPERAALLQR 649 (661)
Q Consensus 624 ~i~~~lp~dlq~~l~~~~~~~~~~~~ 649 (661)
.+|+.||.|+|+=|+++=.|+. +||
T Consensus 19 eVF~~LP~dIQ~Ells~~~~e~-~~g 43 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSGKSREN-LKG 43 (48)
T ss_dssp GGTTTSCHHHHHHHTTCCCSCC-CC-
T ss_pred HHHHHCcHHHHHHHHhcchHHh-hcc
Confidence 4789999999999999877663 444
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.56 E-value=52 Score=36.64 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 006105 609 TDSAEICQKLKGDLLAVFN 627 (661)
Q Consensus 609 ~~~~~~~~~l~~~l~~i~~ 627 (661)
.+.-+--+.+|.||+.++.
T Consensus 172 ~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred ecchHHHHHHHHHHHHHhh
Confidence 3456667777777777765
No 4
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=22.92 E-value=47 Score=28.84 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHHHH-hcCcHHHHHH
Q 006105 609 TDSAEICQKLKGDLLAVF-NVLPKDVQQL 636 (661)
Q Consensus 609 ~~~~~~~~~l~~~l~~i~-~~lp~dlq~~ 636 (661)
.+.+|++++|+..|+..- ..||.|||.+
T Consensus 24 LT~~Ell~~Lk~~L~~~~~~~LP~dL~~~ 52 (94)
T 2krx_A 24 LTTIELLEKLKGELEKISFSDLPLELQKL 52 (94)
T ss_dssp ECHHHHHHHHHHHHHHSCTTTSCHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCccccCCHHHHhC
Confidence 457999999999999996 9999999874
No 5
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=16.93 E-value=1.7e+02 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHH
Q 006105 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLI 598 (661)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~ 598 (661)
.=|..||..|+-++| |+.+-+.+++..-+ -.|.+||+--||--++|+
T Consensus 13 aRy~~~F~~~~iD~~------e~rrglN~l~~~Dl-----------VP~P~ii~aaLrAcRRvN 59 (109)
T 1v54_E 13 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLN 59 (109)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhh
Confidence 338999999999999 66655555554333 467788877776666554
No 6
>4aqn_A Pesticin; toxin, bacteriocin, colicin, three domains, muramidase; 1.98A {Yersinia pestis} PDB: 4epf_A 4arm_B 4arl_A 4arm_A 4arq_B 4arp_A 4arq_A
Probab=16.05 E-value=2.9e+02 Score=29.19 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred ChHHHHHHHH-hcCC------CccccccccCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 006105 508 NANEFLSSLQ-ARGV------GKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRL 564 (661)
Q Consensus 508 ~~~~FL~sL~-~~g~------~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l 564 (661)
.++.-|.++- +.|. |.|...-.++||.++++..-.- +.++..+|++|+.--++.+
T Consensus 290 e~QTVLvSL~YQyGs~Lssk~PnFw~aV~k~DW~gA~~ELRnf--gd~Y~~RRn~EAdLLq~Gl 351 (357)
T 4aqn_A 290 RTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNI--VDGMSDRRKREGALVQKDI 351 (357)
T ss_dssp HHHHHHHHHHHHHCSCHHHHSHHHHHHHHTTCHHHHHHHHHHC--CSSCHHHHHHHHHHHHHHH
T ss_pred HHhhHhhhhhhhcCCCccccChHHHHHHHhccHHHHHHHHHHh--ccchhhHhHHHHHHHHhcc
Confidence 3455566665 5575 2233334579999998766554 6788899999987655543
No 7
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=15.06 E-value=3e+02 Score=24.53 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc-C-c----HHHHHHHhcCch
Q 006105 585 ESVDTFNAVERHLIQEIQQSGCAATDSAEICQKLKGDLLAVFNV-L-P----KDVQQLLLFNPE 642 (661)
Q Consensus 585 e~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~-l-p----~dlq~~l~~~~~ 642 (661)
|.+|.+.|+|+-|..-++-+.+ +..+.++-++++.-++.+++. + | ..||..|.+.||
T Consensus 14 e~~~nvkKck~FL~tLi~las~-~~~spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~pq 76 (114)
T 2p6v_A 14 ETMENVXXCXNFLSTLIXLASS-GXQSTETAANVXELVQNLLDGXIEAEDFTSRLYRELNSSPQ 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-SSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cccChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCCC
Confidence 7778888888877666655443 445677888888888877762 2 2 346777777765
No 8
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=14.75 E-value=1.9e+02 Score=28.72 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCC
Q 006105 271 LQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL 311 (661)
Q Consensus 271 ~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~ 311 (661)
.....|-=.+|+|--|+|-|+++..|..+..+|.+|+ |..
T Consensus 19 ~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lL-P~~ 58 (226)
T 3v42_A 19 PSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTML-PVG 58 (226)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGS-CGG
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhC-CHH
Confidence 3455555567899999999999999999987777776 543
No 9
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.00 E-value=2.2e+02 Score=26.60 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHH---------H-HHh
Q 006105 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQE---------I-QQS 604 (661)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~~~---------~-~~~ 604 (661)
.=|..||..|+-++| |+.+-+++++..-+ -.|.+||+--||=-+.||.- + .++
T Consensus 56 aRy~~~F~~~~iD~w------ElrrglN~l~~~Dl-----------VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 56 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 338899999999999 55555555544322 46888888777766655421 1 122
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhcCcHHH
Q 006105 605 GCAATDSAEICQKLKGDLLAVFNVLPKDV 633 (661)
Q Consensus 605 ~~~~~~~~~~~~~l~~~l~~i~~~lp~dl 633 (661)
++....=+-+++.|+--++.+==.+|+||
T Consensus 119 ~~~~~iY~y~lqElkPtl~ELGI~t~EeL 147 (152)
T 2y69_E 119 GPHKEIYPYVIQELRPTLNELGISTPEEL 147 (152)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHTCCCTTTT
T ss_pred CCchhhHHHHHHHHhhHHHHhCCCCHHHh
Confidence 22211134455555555554444566654
No 10
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=13.83 E-value=1.1e+02 Score=30.51 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhc
Q 006105 273 LWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIA 308 (661)
Q Consensus 273 L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~ 308 (661)
+...|+.+++...|+++|+-|+- .+.|+.||.
T Consensus 123 ~~~a~~~l~l~~aIvaIGNAPTA----L~~Lleli~ 154 (231)
T 2afr_A 123 IQKANSFNLLNESIIVIGNAPTA----LLEIEKLIR 154 (231)
T ss_dssp HHHHHHTTCSTTCEEEESSCHHH----HHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEeCcHHH----HHHHHHHHH
Confidence 44555554446699999999974 456666664
Done!