Query 006105
Match_columns 661
No_of_seqs 163 out of 226
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 16:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006105.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006105hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54e_ a.118.11.1 (E:) Cytoch 13.4 90 0.0066 25.4 4.3 47 535-598 9-55 (105)
2 d1ku2a1 a.4.13.1 (A:273-332) S 13.2 1.9E+02 0.014 20.8 5.8 34 584-618 5-38 (60)
3 d1cxzb_ a.2.6.1 (B:) Protein k 11.7 3.2E+02 0.023 21.2 7.1 49 544-592 17-66 (86)
4 d1io1a_ e.32.1.1 (A:) Phase 1 10.9 1E+02 0.0075 28.0 4.6 40 584-628 27-66 (395)
5 d1ug7a_ a.24.24.1 (A:) Domain 10.3 3.2E+02 0.024 22.5 6.9 43 557-602 11-54 (128)
6 d1gkub1 c.37.1.16 (B:1-250) He 10.2 2.5E+02 0.018 24.3 7.0 34 280-313 83-116 (237)
7 d2gyc31 a.108.1.1 (3:2-48) Rib 9.8 61 0.0044 22.7 1.7 25 571-595 3-27 (47)
8 d1vqov1 a.2.2.1 (V:1-65) Ribos 9.1 3.3E+02 0.024 19.7 6.2 50 578-627 8-58 (65)
9 d2prva1 d.369.1.1 (A:1-152) Un 8.7 1.5E+02 0.011 24.3 4.4 47 589-640 2-50 (152)
10 d1wr6a1 a.7.8.1 (A:211-300) AD 8.5 2.4E+02 0.017 21.7 5.2 30 613-642 43-75 (90)
No 1
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.42 E-value=90 Score=25.45 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHH
Q 006105 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLI 598 (661)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~ 598 (661)
.=|..||..|+-++| |+.+-+.+++..=+ -.|-+||+--||--+.|+
T Consensus 9 aRy~~~F~~~~iD~w------e~rrgmN~l~~~Dl-----------VPeP~Ii~aALrAcRRvN 55 (105)
T d1v54e_ 9 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLN 55 (105)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhh
Confidence 448999999999999 55555555554333 467777777776665443
No 2
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=13.19 E-value=1.9e+02 Score=20.75 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=22.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 006105 584 LESVDTFNAVERHLIQEIQQSGCAATDSAEICQKL 618 (661)
Q Consensus 584 ve~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 618 (661)
|.++|.+.++++ ..+++.+.-+-.++.+|+-+.+
T Consensus 5 vH~~e~i~rv~r-~~~~l~qe~gRePt~eEiA~~l 38 (60)
T d1ku2a1 5 VHMVETINKLSR-TARQLQQELGREPSYEEIAEAM 38 (60)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTSCCCHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHHHHHHHhCCCCCHHHHHHHH
Confidence 567888888877 4455555545557777776665
No 3
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.69 E-value=3.2e+02 Score=21.22 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcc-CCcchhhhHHHH
Q 006105 544 PNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAK-MSELESVDTFNA 592 (661)
Q Consensus 544 pnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~-~~Eve~vD~~~~ 592 (661)
|.|...++.+|+.+.++++.-..=--...++..-+.+ +.-.+-|++.|+
T Consensus 17 ~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~attd~kk~~~~V~~eL~ 66 (86)
T d1cxzb_ 17 PGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLR 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHccHHHHHHHHHHHHH
Confidence 4467888888888887766533322222344333444 556677877775
No 4
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=10.89 E-value=1e+02 Score=28.05 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=28.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc
Q 006105 584 LESVDTFNAVERHLIQEIQQSGCAATDSAEICQKLKGDLLAVFNV 628 (661)
Q Consensus 584 ve~vD~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ 628 (661)
-|+.|++.|+|+ .-.|+.+ +.-+++=|+.|+.+++.++..
T Consensus 27 ~~~~~iL~r~re----Lavqaan-~t~~~~dr~ai~~E~~~l~~e 66 (395)
T d1io1a_ 27 NEINNNLQRVRE----LAVQSAN-STNSQSDLDSIQAEITQRLNE 66 (395)
T ss_dssp HHHHHHHHHHHH----HHHHHTC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHhcc-CCCCHHHHHHHHHHHHHHHHH
Confidence 478899999999 4456655 434566788888888887754
No 5
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.32 E-value=3.2e+02 Score=22.47 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH-HhhccHHHHhccCCcchhhhHHHHHHHHHHHHHH
Q 006105 557 AEQEQHRLWRQA-RMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQ 602 (661)
Q Consensus 557 ~~~~~~~l~~~a-~~~~d~~~~~~~~~Eve~vD~~~~l~~~l~~~~~ 602 (661)
.+..+.+-|.++ ...+|...|.+ =||.+|=+-.|-++|..+.+
T Consensus 11 ~tk~~v~kW~a~~~kgtdFDSWGQ---LVEA~dEYq~lar~L~k~~~ 54 (128)
T d1ug7a_ 11 VTRSLLQRWGASLRRGADFDSWGQ---LVEAIDEYQILARHLQKEAQ 54 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCcchHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 344444455544 44578888865 68999999999998877753
No 6
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.20 E-value=2.5e+02 Score=24.32 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCC
Q 006105 280 LLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCS 313 (661)
Q Consensus 280 lLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~ 313 (661)
+.-|.+++|+.|+-..+.+..-.+..+..-+...
T Consensus 83 ~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 83 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCc
Confidence 3458899999999888888888888877654443
No 7
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=9.83 E-value=61 Score=22.71 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=20.2
Q ss_pred hccHHHHhccCCcchhhhHHHHHHH
Q 006105 571 RTDIQQLIAKMSELESVDTFNAVER 595 (661)
Q Consensus 571 ~~d~~~~~~~~~Eve~vD~~~~l~~ 595 (661)
+.||..-+..++=.|+|||+-.+++
T Consensus 3 ke~Ileaia~MSVmdvveLi~amEE 27 (47)
T d2gyc31 3 KDQIIEAVAAMSVMDVVELISAMEE 27 (47)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666677999999999998888
No 8
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.11 E-value=3.3e+02 Score=19.66 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=34.2
Q ss_pred hccCCcchhhhHHHHHHHHHHH-HHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 006105 578 IAKMSELESVDTFNAVERHLIQ-EIQQSGCAATDSAEICQKLKGDLLAVFN 627 (661)
Q Consensus 578 ~~~~~Eve~vD~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~i~~ 627 (661)
+++++.-|+.+.+..+++.|-. ++.+...++...+.-..+++.+|.-|.-
T Consensus 8 lr~ls~~eL~~~l~elk~El~~LR~~q~~~gql~~~~~ik~~Rk~IARi~T 58 (65)
T d1vqov1 8 IRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKT 58 (65)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 4568888888888888875544 3445555566666677778877776653
No 9
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}
Probab=8.74 E-value=1.5e+02 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHH-hcCcHHHHHHHhcC
Q 006105 589 TFNAVERHLIQEIQQSGCA-ATDSAEICQKLKGDLLAVF-NVLPKDVQQLLLFN 640 (661)
Q Consensus 589 ~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~i~-~~lp~dlq~~l~~~ 640 (661)
+..||+.-+.+. .+.... .+.+++-.+++ +.-+ -.||+|.+..|+..
T Consensus 2 ~~~~i~~~i~~~-~~~~~~~~gas~e~I~~~----E~~Lg~~LP~~Yk~fL~~~ 50 (152)
T d2prva1 2 IYSKVENFINEN-KQNAIFTEGASHENIGRI----EENLQCDLPNSYKWFLEKY 50 (152)
T ss_dssp HHHHHHHHHHHH-GGGCEECCCCCHHHHHHH----HHHHTSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHc-ccccccCCCCCHHHHHHH----HHHhCCCCCHHHHHHHHHc
Confidence 345677644333 232222 24555555554 4444 48999999998753
No 10
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.46 E-value=2.4e+02 Score=21.68 Aligned_cols=30 Identities=10% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcCcHH---HHHHHhcCch
Q 006105 613 EICQKLKGDLLAVFNVLPKD---VQQLLLFNPE 642 (661)
Q Consensus 613 ~~~~~l~~~l~~i~~~lp~d---lq~~l~~~~~ 642 (661)
++|.+.+..|..++....+| |.++|..|=+
T Consensus 43 ~~C~~~qp~i~~li~~~~~dee~l~elL~~ND~ 75 (90)
T d1wr6a1 43 DQCENKRRTLFKLASETEDNDNSLGDILQASDN 75 (90)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhHH
Confidence 46788888888888776655 8888877754
Done!