Query 006106
Match_columns 661
No_of_seqs 264 out of 859
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 3.4E-92 1.2E-96 803.6 52.5 589 15-660 1-651 (677)
2 3t98_B Nucleoporin NUP58/NUP45 49.5 87 0.003 24.8 8.1 56 90-145 5-64 (93)
3 3obv_E Protein diaphanous homo 15.0 8.4E+02 0.029 25.2 10.8 89 60-148 202-304 (457)
4 1w53_A Phosphoserine phosphata 13.6 3.6E+02 0.012 20.7 5.5 47 514-564 32-80 (84)
5 2j6y_A Phosphoserine phosphata 12.2 5.8E+02 0.02 20.7 7.0 46 519-568 38-84 (111)
6 4e17_B Catenin alpha-1; four h 10.9 2.1E+02 0.0073 18.6 2.8 16 95-110 21-36 (40)
7 2wx3_A MRNA-decapping enzyme 1 10.6 2E+02 0.0068 19.8 2.7 18 524-541 27-44 (51)
8 2rpa_A Katanin P60 ATPase-cont 10.0 2.9E+02 0.0099 20.9 3.8 36 315-350 10-45 (78)
9 4a64_A Cullin-4B, CUL4B, CUL-4 9.1 1.1E+03 0.039 23.0 9.3 73 481-559 269-346 (354)
10 2jxf_A NS4B(40-69), genome pol 7.2 3.2E+02 0.011 16.2 2.2 14 489-502 12-25 (30)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-92 Score=803.57 Aligned_cols=589 Identities=22% Similarity=0.362 Sum_probs=481.3
Q ss_pred HHHHHHHHhcCCCCCceeeecccCCCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhhcCC--
Q 006106 15 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF-- 89 (661)
Q Consensus 15 lv~dlL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~ll~~il~~g~~~~~l~~fv~~~~~~-- 89 (661)
||+|||++|+|++|.+|++++. ++|+|++ .+++|+++++++++++|.+|++|++|++.....
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~~-------------~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNKR-------------SGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEETT-------------TEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecCC-------------CceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 6899999999999999998761 4788988 567999999999999999999999999964321
Q ss_pred -------------CcChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006106 90 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 155 (661)
Q Consensus 90 -------------~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~ 155 (661)
..|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++..++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 169999999999999999999999999999854 579999999999999999999999999887667
Q ss_pred CchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEcCCCCcceeeeCCccccccc---------
Q 006106 156 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL--------- 226 (661)
Q Consensus 156 ~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~~~--------- 226 (661)
++||+||+.||+.+ .+|||.+++++.+|+..|++||++||..||.+|+|.|||+||||++++..++...
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 89999999999987 4999999999999999999999999999999999999999999998865332100
Q ss_pred -----c--------------ccchhhhhcccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhcCCCC-----CCCccc
Q 006106 227 -----T--------------QDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN 280 (661)
Q Consensus 227 -----~--------------~~~~~~~W~~~y~l-~~~lP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~ 280 (661)
. ++....+|..+|+| .+++|+|+++ +|+|||.|||++++||+++.... ++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 0 00012479999999 7889999987 99999999999999999764311 000000
Q ss_pred c------cccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHhcccc
Q 006106 281 S------KLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 352 (661)
Q Consensus 281 ~------~~~~f~--~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~ 352 (661)
. .+...+ +...|...|+++|..+|+.|+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0 011110 12467889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCC
Q 006106 353 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 432 (661)
Q Consensus 353 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wP 432 (661)
+++..+|+..|+.|++.+....++..+.+.+.+........ ..-... ...+ ......+.+..|||+|+|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAR--EGPS-RETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccc--cccc-cccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998766566666667666654321100 000000 0000 0011223457899999999999999
Q ss_pred ceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhhcccccH
Q 006106 433 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 512 (661)
Q Consensus 433 L~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~~ 512 (661)
|++|||+++|.+|++||+|||++||+++.|+++|+.++..+.........++ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754433222233444 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 006106 513 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE 592 (661)
Q Consensus 513 ~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~~~L~~~~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (661)
.+|++++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++.. .. .
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~~-~---------- 603 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------GP-L---------- 603 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C----------
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------cc-c----------
Confidence 999999999999999999999999999999999999999999999999999999986410 00 0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 006106 593 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD 660 (661)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~l~~ll~rld~n 660 (661)
.+...+++++++++|++++..|+++|++++ +.+..++|++||+|||||
T Consensus 604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N 651 (677)
T 3rip_A 604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN 651 (677)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence 111246799999999999999999999984 456779999999999998
No 2
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=49.46 E-value=87 Score=24.78 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=39.5
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCcHHHHHHhhhhhHHHHHHHH
Q 006106 90 KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVS 145 (661)
Q Consensus 90 ~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~----~~lsL~~l~~~~~~~~~~l~~L~ 145 (661)
.+..+.+-++.-.++.|..|+..|.++|+.+.. ...|.+.|..-++.....+=.|+
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999988643 35666666555554444443333
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=15.04 E-value=8.4e+02 Score=25.19 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhHHHH--------------HHHHhhhhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 006106 60 LALQEMAKRIFPLCESFVL--------------TGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRL 125 (661)
Q Consensus 60 ~sl~~ll~~il~~g~~~~~--------------l~~fv~~~~~~~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~~~l 125 (661)
..++.++.-+|.+|++... |.+..+..+.......++-++..+.+.--++..+..+|..--....+
T Consensus 202 ~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 202 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRV 281 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccC
Confidence 4566777788888876542 22222221111222344444444433211111222222111122567
Q ss_pred cHHHHHHhhhhhHHHHHHHHHHH
Q 006106 126 SIQGLWFYCQPMLGSMQAVSAVI 148 (661)
Q Consensus 126 sL~~l~~~~~~~~~~l~~L~~i~ 148 (661)
++..|...+......+..+..-+
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l 304 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDV 304 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655555555444433
No 4
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=13.63 E-value=3.6e+02 Score=20.73 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Q 006106 514 VMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQY 564 (661)
Q Consensus 514 ~~~~~l-~~~~~~d~l~~~H~~fL~~i~~~~~L~-~~~l~~~l~~il~~~~~F 564 (661)
+|-+.+ ++.-..++++..|.+++..+. .+ ...+...++=++.+..-|
T Consensus 32 ~fs~~~iek~i~PEeiV~iHk~~i~el~----~~l~e~v~~Sfd~L~Evm~gy 80 (84)
T 1w53_A 32 KFSRKTIEHQIPPEEIISIHRKVLKELY----PSLPEDVFHSLDFLIEVMIGY 80 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHh
Confidence 344433 456789999999998877654 44 566777766666665544
No 5
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=12.24 E-value=5.8e+02 Score=20.73 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=35.9
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHH
Q 006106 519 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAAT 568 (661)
Q Consensus 519 l~~~~~~d~l~~~H~~fL~~i~~~~~L~-~~~l~~~l~~il~~~~~F~~~~ 568 (661)
+++.-.+++++..|..++..+ +.+ ...+...++=++.+..-|.-.-
T Consensus 38 iek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlay 84 (111)
T 2j6y_A 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAY 84 (111)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhH
Confidence 445678999999999999887 666 5678888888888888777544
No 6
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=10.94 E-value=2.1e+02 Score=18.58 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 006106 95 NHAFAASLRALLLDYE 110 (661)
Q Consensus 95 ~~Al~~~l~~~L~~y~ 110 (661)
+.|+-.+|+.+|.+|.
T Consensus 21 CnavrqALQdLlseY~ 36 (40)
T 4e17_B 21 CNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455555666666664
No 7
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=10.63 E-value=2e+02 Score=19.81 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006106 524 SIDEVIQHHDFFLDKCLR 541 (661)
Q Consensus 524 ~~d~l~~~H~~fL~~i~~ 541 (661)
|-+-+...|+.||..+.+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456677889999887654
No 8
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=9.99 E-value=2.9e+02 Score=20.93 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHhcc
Q 006106 315 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQ 350 (661)
Q Consensus 315 ~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~ 350 (661)
..+.++++.-|.|-|+|+-|-...+++.+...+.+-
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999888776653
No 9
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=9.13 E-value=1.1e+03 Score=22.99 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=46.5
Q ss_pred hHHhHHHHHH----HHHHHHHHHHHHHHhhcccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 006106 481 AISRSSLLCR----SMLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 555 (661)
Q Consensus 481 ~~~~~~~lr~----~m~~fv~~l~~Y~~~~VIe~~~~~~~~~l-~~~~~~d~l~~~H~~fL~~i~~~~~L~~~~l~~~l~ 555 (661)
.+.+++.|.. .+-.+.+.+..|+.....+. .... +...=+++|++.|+.| +.+...||-.++.+..++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~i-----v~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI-----VINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH-----HHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 3445554443 23467777777776643321 1111 2234579999999976 5667789999998888888
Q ss_pred HHHH
Q 006106 556 RLKS 559 (661)
Q Consensus 556 ~il~ 559 (661)
+.+.
T Consensus 343 ~af~ 346 (354)
T 4a64_A 343 EAFE 346 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
No 10
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=7.16 E-value=3.2e+02 Score=16.23 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 006106 489 CRSMLKFINSLLHY 502 (661)
Q Consensus 489 r~~m~~fv~~l~~Y 502 (661)
...|..||+.+|+-
T Consensus 12 ~khMwNfvSGIQYL 25 (30)
T 2jxf_A 12 AKHMWNFISGIQYL 25 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35688999999853
Done!