Query 006106
Match_columns 661
No_of_seqs 264 out of 859
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 16:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 26.6 1.3E+02 0.0092 22.9 8.4 67 138-207 4-70 (123)
2 d1kxpd3 a.126.1.1 (D:405-473) 25.8 24 0.0018 23.9 2.9 39 509-550 8-56 (69)
3 d2hyja2 a.121.1.1 (A:83-200) P 21.0 1.5E+02 0.011 21.9 8.3 49 156-207 24-72 (118)
4 d2hyec2 a.118.17.1 (C:55-401) 12.0 4.6E+02 0.034 23.2 10.1 64 492-561 279-343 (347)
5 d2id3a2 a.121.1.1 (A:81-203) P 10.7 3E+02 0.022 20.4 7.1 50 155-207 23-72 (123)
6 d1pb6a2 a.121.1.1 (A:86-211) H 10.4 1.5E+02 0.011 22.4 4.7 35 173-207 35-69 (126)
7 d2i10a2 a.121.1.1 (A:79-194) P 10.1 73 0.0053 23.8 2.6 62 144-208 11-73 (116)
8 d1ldja2 a.118.17.1 (A:17-410) 9.4 3.1E+02 0.023 25.1 7.8 75 481-561 302-386 (394)
9 d1w53a_ a.186.1.2 (A:) Phospho 9.1 3.1E+02 0.022 19.3 5.7 43 519-565 38-81 (84)
10 d2o3la1 a.69.4.1 (A:14-95) Hyp 7.0 3.8E+02 0.027 18.6 5.7 50 511-562 1-50 (82)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=26.58 E-value=1.3e+02 Score=22.91 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEc
Q 006106 138 LGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 207 (661)
Q Consensus 138 ~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 207 (661)
...+.++..++..+... +-.+-...++......-||.++..+.+.+.....-+...|..++..|.+.
T Consensus 4 ~~~~~~~d~~~~~l~~~---~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 4 ASISSYLDELTEGLRDV---ADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHHTTTG---GGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 34455556666665422 22233334444333467999999999999988888888888888888763
No 2
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.81 E-value=24 Score=23.93 Aligned_cols=39 Identities=21% Similarity=0.541 Sum_probs=27.8
Q ss_pred cccHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHhcCCChHH
Q 006106 509 EPNWHVMHNRLQT----------AKSIDEVIQHHDFFLDKCLRECLLHLPDL 550 (661)
Q Consensus 509 e~~~~~~~~~l~~----------~~~~d~l~~~H~~fL~~i~~~~~L~~~~l 550 (661)
+..|.+|.++|.+ ...+.+|.+.|.+|-..| |-+++|++
T Consensus 8 e~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPl 56 (69)
T d1kxpd3 8 ENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPL 56 (69)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHH
T ss_pred hccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCch
Confidence 3445555555542 347889999999998775 78888887
No 3
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.03 E-value=1.5e+02 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=40.2
Q ss_pred CchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEc
Q 006106 156 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 207 (661)
Q Consensus 156 ~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 207 (661)
..||-+.+..-+. ...++.+++.+...+.....-+.+.|......|.+.
T Consensus 24 ~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 24 PGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3478888777664 477889999999999999999999999999888763
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.97 E-value=4.6e+02 Score=23.22 Aligned_cols=64 Identities=6% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006106 492 MLKFINSLLHYLTFEVLEPNWHVMHNRLQ-TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 561 (661)
Q Consensus 492 m~~fv~~l~~Y~~~~VIe~~~~~~~~~l~-~~~~~d~l~~~H~~fL~~i~~~~~L~~~~l~~~l~~il~~~ 561 (661)
+..+.+.+..|+...+-+ .....+ ...=+++++..|+.| +.+...||-.++.+.+++.+.+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~-----~v~~~~~~~~~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTA-----IVINPEKDKDMVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHSCGGGTTTHHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhCcccchHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345566666666554321 111111 123378899999875 5677899999999988888876543
No 5
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.70 E-value=3e+02 Score=20.35 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEc
Q 006106 155 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 207 (661)
Q Consensus 155 ~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 207 (661)
...|+.++-.+...+ ..+|.....+.+++...-.-+-.++...+-.|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666655443 45678888888888888888888999999999984
No 6
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=10.44 E-value=1.5e+02 Score=22.41 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.7
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEc
Q 006106 173 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 207 (661)
Q Consensus 173 ~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~ 207 (661)
+|.+.++..+...+........+.|..|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 56666667777777777888888999999999774
No 7
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=10.10 E-value=73 Score=23.84 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=44.4
Q ss_pred HHHHHHHhh-cCCCchhhHHHHHHHHHHhccCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceEcC
Q 006106 144 VSAVIHKAS-ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 208 (661)
Q Consensus 144 L~~i~~~~~-~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wi~~G~l~D 208 (661)
|...++... +...+||-+.+...+. ...|+.+++.+...+......+...+......|++.+
T Consensus 11 l~~~i~~~~~~~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 11 LTGRVEVFTAPGQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp HHHHHHHHC------CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHcCCCCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334443332 3456788887776653 3678999999999999999999999999999998854
No 8
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.43 E-value=3.1e+02 Score=25.11 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=47.3
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHHhhcccccHHHHHHHhccCC------CHHHHHHHHHHHHHHHHHHhcCCChHH
Q 006106 481 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAK------SIDEVIQHHDFFLDKCLRECLLHLPDL 550 (661)
Q Consensus 481 ~~~~~~~lr~~----m~~fv~~l~~Y~~~~VIe~~~~~~~~~l~~~~------~~d~l~~~H~~fL~~i~~~~~L~~~~l 550 (661)
.+.+++.|..+ +-.+.+.+..|+...+.+ ......... =+++|+..|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 34555544433 355667777776654422 222222111 16888888886 577888999999999
Q ss_pred HHHHHHHHHHH
Q 006106 551 LKKVERLKSLC 561 (661)
Q Consensus 551 ~~~l~~il~~~ 561 (661)
.+++.+-+.-+
T Consensus 376 ~~~l~~af~~f 386 (394)
T d1ldja2 376 VAALDKACGRF 386 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888875543
No 9
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.12 E-value=3.1e+02 Score=19.30 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=30.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 006106 519 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 565 (661)
Q Consensus 519 l~~~~~~d~l~~~H~~fL~~i~~~~~L~-~~~l~~~l~~il~~~~~F~ 565 (661)
|++--++++++..|.+++..+ ..+ .+.+...++=++.+..-|.
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 455678999999999888765 444 4667777777776665543
No 10
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=7.04 E-value=3.8e+02 Score=18.62 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=29.7
Q ss_pred cHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006106 511 NWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCL 562 (661)
Q Consensus 511 ~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~~~L~~~~l~~~l~~il~~~~ 562 (661)
.|+.|+.++++- ..+-..+-++....+....-++..++...+.+|+++..
T Consensus 1 e~k~~~~R~k~L--p~dy~~~y~~i~~YL~~~~~~~~~~~~~il~dil~l~e 50 (82)
T d2o3la1 1 EYKMMMARVAAL--PEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFE 50 (82)
T ss_dssp HHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 488899988754 23444444444444444444555667777777766544
Done!