Query 006107
Match_columns 661
No_of_seqs 403 out of 3398
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 18:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.8E-79 1.7E-83 683.3 42.1 599 28-648 20-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 7E-46 1.5E-50 439.8 34.9 442 175-649 182-690 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-44 7.7E-49 365.6 15.3 275 182-462 1-284 (287)
4 PRK04841 transcriptional regul 99.6 2.1E-14 4.5E-19 170.2 25.5 290 176-510 13-332 (903)
5 PRK00411 cdc6 cell division co 99.5 4.9E-12 1.1E-16 134.9 24.2 301 175-490 28-359 (394)
6 COG2909 MalT ATP-dependent tra 99.5 4.3E-12 9.4E-17 137.2 20.2 295 176-511 18-339 (894)
7 TIGR03015 pepcterm_ATPase puta 99.4 6.4E-11 1.4E-15 119.3 22.0 181 203-389 44-242 (269)
8 TIGR02928 orc1/cdc6 family rep 99.4 2.2E-10 4.8E-15 120.9 26.6 301 177-490 15-351 (365)
9 PRK00080 ruvB Holliday junctio 99.3 9.6E-11 2.1E-15 121.1 15.9 266 176-492 24-313 (328)
10 PF01637 Arch_ATPase: Archaeal 99.3 3.4E-11 7.4E-16 118.6 11.3 195 179-384 1-233 (234)
11 TIGR00635 ruvB Holliday juncti 99.2 3.6E-10 7.9E-15 116.0 18.4 277 177-492 4-292 (305)
12 COG3899 Predicted ATPase [Gene 99.1 1.8E-09 3.9E-14 123.8 18.9 312 178-509 1-385 (849)
13 PF05729 NACHT: NACHT domain 99.1 8.3E-10 1.8E-14 102.3 10.9 144 203-352 1-163 (166)
14 PTZ00112 origin recognition co 99.0 4.8E-08 1E-12 107.2 22.4 299 177-489 755-1086(1164)
15 PRK04195 replication factor C 98.9 3.1E-07 6.8E-12 99.9 22.4 247 176-462 13-271 (482)
16 PRK06893 DNA replication initi 98.9 4.4E-08 9.6E-13 95.6 14.1 155 203-389 40-207 (229)
17 PRK13342 recombination factor 98.8 9E-08 1.9E-12 102.1 14.6 180 177-388 12-199 (413)
18 PF13191 AAA_16: AAA ATPase do 98.8 1.2E-08 2.5E-13 96.6 6.7 51 178-229 1-51 (185)
19 PRK07003 DNA polymerase III su 98.8 6.8E-07 1.5E-11 98.0 20.4 196 177-387 16-223 (830)
20 PTZ00202 tuzin; Provisional 98.7 1.7E-06 3.8E-11 88.5 21.8 169 170-351 255-433 (550)
21 PF13401 AAA_22: AAA domain; P 98.7 2.1E-08 4.5E-13 88.9 6.9 118 202-321 4-125 (131)
22 COG2256 MGS1 ATPase related to 98.7 1.5E-07 3.1E-12 94.5 13.1 158 201-385 47-212 (436)
23 PRK05564 DNA polymerase III su 98.7 6.7E-07 1.5E-11 91.9 17.4 180 177-384 4-189 (313)
24 PRK12402 replication factor C 98.7 8.9E-07 1.9E-11 92.4 18.4 200 177-386 15-227 (337)
25 PRK14961 DNA polymerase III su 98.7 1.1E-06 2.5E-11 91.9 18.3 194 177-385 16-220 (363)
26 COG1474 CDC6 Cdc6-related prot 98.7 3.7E-06 8.1E-11 87.1 21.7 248 178-436 18-288 (366)
27 PRK12323 DNA polymerase III su 98.6 2.4E-06 5.2E-11 92.6 20.3 199 177-385 16-225 (700)
28 TIGR03420 DnaA_homol_Hda DnaA 98.6 4E-07 8.6E-12 89.1 12.5 171 182-388 22-204 (226)
29 PF13173 AAA_14: AAA domain 98.6 1.3E-07 2.7E-12 83.4 8.0 119 203-344 3-127 (128)
30 PRK14963 DNA polymerase III su 98.6 1.7E-07 3.7E-12 101.3 10.3 196 177-383 14-215 (504)
31 COG3903 Predicted ATPase [Gene 98.6 1.1E-07 2.4E-12 96.0 8.0 291 201-511 13-315 (414)
32 PF05496 RuvB_N: Holliday junc 98.6 1.7E-06 3.7E-11 81.2 14.3 182 176-390 23-226 (233)
33 PRK00440 rfc replication facto 98.6 6E-06 1.3E-10 85.4 20.0 183 177-385 17-203 (319)
34 PRK14949 DNA polymerase III su 98.6 2E-06 4.4E-11 96.2 17.1 184 177-385 16-220 (944)
35 PRK07471 DNA polymerase III su 98.5 3.4E-06 7.4E-11 87.6 17.8 196 176-386 18-239 (365)
36 PRK14960 DNA polymerase III su 98.5 2.4E-06 5.2E-11 92.8 16.4 194 177-385 15-219 (702)
37 cd00009 AAA The AAA+ (ATPases 98.5 9.8E-07 2.1E-11 79.6 11.0 124 180-322 1-130 (151)
38 PLN03025 replication factor C 98.5 2.8E-06 6.1E-11 87.5 15.7 184 177-384 13-199 (319)
39 PRK09112 DNA polymerase III su 98.5 6.6E-06 1.4E-10 85.0 18.0 199 175-386 21-241 (351)
40 PRK06645 DNA polymerase III su 98.5 6E-06 1.3E-10 89.0 17.7 195 177-383 21-227 (507)
41 PRK14957 DNA polymerase III su 98.5 5.2E-06 1.1E-10 90.0 17.2 185 177-386 16-222 (546)
42 TIGR02397 dnaX_nterm DNA polym 98.5 9.1E-06 2E-10 85.4 18.5 185 177-386 14-219 (355)
43 KOG2028 ATPase related to the 98.4 3.8E-06 8.2E-11 82.9 13.7 158 201-381 161-332 (554)
44 PRK07940 DNA polymerase III su 98.4 6.8E-06 1.5E-10 86.1 16.7 191 177-385 5-213 (394)
45 PRK08727 hypothetical protein; 98.4 6.1E-06 1.3E-10 80.7 15.3 151 203-385 42-204 (233)
46 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.3E-10 76.4 16.1 91 281-381 95-187 (188)
47 PRK14951 DNA polymerase III su 98.4 7.3E-06 1.6E-10 90.1 16.8 198 177-385 16-225 (618)
48 PRK07994 DNA polymerase III su 98.4 5.6E-06 1.2E-10 91.2 15.9 195 177-386 16-221 (647)
49 PRK05642 DNA replication initi 98.4 5.4E-06 1.2E-10 81.1 14.2 155 203-389 46-212 (234)
50 TIGR02903 spore_lon_C ATP-depe 98.4 3.5E-06 7.5E-11 93.8 14.1 203 177-388 154-398 (615)
51 PRK08691 DNA polymerase III su 98.4 6.6E-06 1.4E-10 90.3 15.7 195 177-386 16-221 (709)
52 PRK14964 DNA polymerase III su 98.4 1E-05 2.3E-10 86.4 16.9 184 177-384 13-216 (491)
53 COG2255 RuvB Holliday junction 98.4 1.1E-05 2.4E-10 77.4 15.1 268 176-492 25-314 (332)
54 PRK05896 DNA polymerase III su 98.4 8.9E-06 1.9E-10 88.3 16.3 196 177-387 16-223 (605)
55 PRK14962 DNA polymerase III su 98.4 1.5E-05 3.4E-10 85.5 18.1 201 177-402 14-240 (472)
56 PRK14956 DNA polymerase III su 98.4 5.5E-06 1.2E-10 87.5 14.2 194 177-385 18-222 (484)
57 PRK08084 DNA replication initi 98.4 3.7E-06 8.1E-11 82.3 12.3 155 203-389 46-213 (235)
58 PRK08903 DnaA regulatory inact 98.4 6.3E-06 1.4E-10 80.6 13.9 152 202-389 42-203 (227)
59 PF05621 TniB: Bacterial TniB 98.4 1.2E-05 2.6E-10 79.2 15.6 200 185-386 45-262 (302)
60 PF14516 AAA_35: AAA-like doma 98.4 0.00017 3.8E-09 74.4 25.1 201 176-392 10-246 (331)
61 PF00308 Bac_DnaA: Bacterial d 98.4 6.7E-06 1.5E-10 79.4 13.3 187 179-387 11-210 (219)
62 PRK14958 DNA polymerase III su 98.4 9.6E-06 2.1E-10 88.0 15.9 185 177-385 16-220 (509)
63 KOG0444 Cytoskeletal regulator 98.3 4.1E-08 8.9E-13 102.6 -2.2 113 547-660 190-321 (1255)
64 PRK14955 DNA polymerase III su 98.3 6.6E-06 1.4E-10 87.2 14.3 200 177-384 16-227 (397)
65 PRK14087 dnaA chromosomal repl 98.3 1.9E-05 4.1E-10 84.7 16.9 169 202-387 141-321 (450)
66 cd01128 rho_factor Transcripti 98.3 9.6E-07 2.1E-11 86.4 6.4 90 203-294 17-115 (249)
67 PRK09087 hypothetical protein; 98.3 8.8E-06 1.9E-10 78.9 13.0 142 203-387 45-197 (226)
68 PRK13341 recombination factor 98.3 8.5E-06 1.8E-10 91.7 14.0 174 177-382 28-214 (725)
69 TIGR01242 26Sp45 26S proteasom 98.3 1.1E-05 2.3E-10 84.8 13.9 178 176-379 121-328 (364)
70 PRK14969 DNA polymerase III su 98.3 1.8E-05 4E-10 86.4 16.0 178 177-382 16-217 (527)
71 PRK14950 DNA polymerase III su 98.2 1.5E-05 3.2E-10 88.7 14.3 196 177-386 16-222 (585)
72 PRK14970 DNA polymerase III su 98.2 4.7E-05 1E-09 80.3 17.5 184 177-384 17-208 (367)
73 KOG2227 Pre-initiation complex 98.2 3.6E-05 7.9E-10 78.9 15.6 221 176-400 149-386 (529)
74 PRK09111 DNA polymerase III su 98.2 3.7E-05 8.1E-10 84.7 17.1 198 177-386 24-234 (598)
75 PRK09376 rho transcription ter 98.2 2.7E-06 6E-11 86.7 7.6 102 188-294 158-268 (416)
76 PRK07764 DNA polymerase III su 98.2 4.3E-05 9.3E-10 87.2 17.5 191 177-382 15-218 (824)
77 PRK14959 DNA polymerase III su 98.2 6.6E-05 1.4E-09 82.1 18.2 197 177-389 16-225 (624)
78 PRK14952 DNA polymerase III su 98.2 8E-05 1.7E-09 81.7 18.3 197 177-388 13-223 (584)
79 PRK14953 DNA polymerase III su 98.1 0.00013 2.7E-09 79.0 18.9 185 177-386 16-221 (486)
80 TIGR03345 VI_ClpV1 type VI sec 98.1 2.3E-05 4.9E-10 90.5 14.0 184 177-379 187-390 (852)
81 PHA02544 44 clamp loader, smal 98.1 2.4E-05 5.1E-10 80.8 12.9 149 176-350 20-171 (316)
82 PF05673 DUF815: Protein of un 98.1 6.1E-05 1.3E-09 72.0 13.9 129 171-325 21-154 (249)
83 TIGR00362 DnaA chromosomal rep 98.1 0.00011 2.4E-09 78.5 17.7 162 202-384 136-309 (405)
84 PRK14954 DNA polymerase III su 98.1 7.9E-05 1.7E-09 82.4 16.7 198 177-382 16-225 (620)
85 PRK06620 hypothetical protein; 98.1 0.00012 2.7E-09 70.3 15.9 140 203-387 45-191 (214)
86 PRK07133 DNA polymerase III su 98.1 0.00012 2.6E-09 81.4 17.8 191 177-384 18-218 (725)
87 PRK14971 DNA polymerase III su 98.1 0.00012 2.6E-09 81.4 17.9 184 177-385 17-222 (614)
88 KOG2543 Origin recognition com 98.1 5.3E-05 1.2E-09 75.8 13.3 169 176-351 5-192 (438)
89 TIGR02881 spore_V_K stage V sp 98.1 5.6E-05 1.2E-09 75.5 13.5 159 178-353 7-192 (261)
90 CHL00181 cbbX CbbX; Provisiona 98.1 0.00018 4E-09 72.4 17.2 134 204-354 61-211 (287)
91 TIGR02880 cbbX_cfxQ probable R 98.1 0.0001 2.2E-09 74.3 15.1 133 204-353 60-209 (284)
92 PRK08451 DNA polymerase III su 98.1 0.00023 5E-09 77.0 18.6 195 177-386 14-219 (535)
93 PRK03992 proteasome-activating 98.0 5.1E-05 1.1E-09 80.1 13.3 177 177-379 131-337 (389)
94 TIGR00767 rho transcription te 98.0 1.8E-05 4E-10 81.2 9.2 90 203-294 169-267 (415)
95 PRK06305 DNA polymerase III su 98.0 0.00018 3.9E-09 77.3 16.9 183 177-385 17-223 (451)
96 PRK14948 DNA polymerase III su 98.0 0.00022 4.8E-09 79.3 18.0 197 177-386 16-223 (620)
97 PRK11331 5-methylcytosine-spec 98.0 4.2E-05 9.1E-10 80.0 11.5 119 177-306 175-297 (459)
98 KOG0617 Ras suppressor protein 98.0 1.1E-06 2.3E-11 77.7 -0.2 66 584-650 44-112 (264)
99 PRK14965 DNA polymerase III su 98.0 0.00029 6.3E-09 78.1 18.4 209 177-400 16-240 (576)
100 TIGR02639 ClpA ATP-dependent C 98.0 4.5E-05 9.7E-10 87.4 12.1 158 177-352 182-358 (731)
101 PRK14088 dnaA chromosomal repl 98.0 0.0003 6.4E-09 75.5 17.5 162 202-384 130-304 (440)
102 KOG0989 Replication factor C, 97.9 7.1E-05 1.5E-09 72.8 10.9 186 175-380 34-225 (346)
103 KOG0617 Ras suppressor protein 97.9 1.4E-06 3.1E-11 76.9 -0.8 106 547-653 72-186 (264)
104 PRK00149 dnaA chromosomal repl 97.9 0.00024 5.3E-09 76.8 16.3 162 202-384 148-321 (450)
105 PF12799 LRR_4: Leucine Rich r 97.9 5.5E-06 1.2E-10 57.1 2.3 39 594-633 1-40 (44)
106 PRK14086 dnaA chromosomal repl 97.9 0.00027 5.8E-09 77.1 16.2 161 203-384 315-487 (617)
107 PRK06647 DNA polymerase III su 97.9 0.0005 1.1E-08 75.6 18.4 194 177-385 16-220 (563)
108 COG3267 ExeA Type II secretory 97.9 0.0006 1.3E-08 65.0 16.2 182 202-388 51-248 (269)
109 KOG0444 Cytoskeletal regulator 97.9 8.9E-07 1.9E-11 92.9 -2.9 53 582-634 135-195 (1255)
110 PRK07399 DNA polymerase III su 97.9 0.0004 8.7E-09 70.8 16.2 198 177-386 4-222 (314)
111 CHL00095 clpC Clp protease ATP 97.9 4E-05 8.7E-10 88.8 9.8 156 177-350 179-352 (821)
112 PRK05707 DNA polymerase III su 97.9 0.00035 7.6E-09 71.6 15.3 97 281-385 105-203 (328)
113 PRK05563 DNA polymerase III su 97.9 0.00073 1.6E-08 74.6 18.5 192 177-383 16-218 (559)
114 COG0593 DnaA ATPase involved i 97.8 0.00052 1.1E-08 71.2 15.8 158 177-355 88-260 (408)
115 PF00004 AAA: ATPase family as 97.8 3.2E-05 7E-10 68.3 6.2 22 205-226 1-22 (132)
116 PRK12422 chromosomal replicati 97.8 0.00074 1.6E-08 72.3 16.4 155 202-379 141-307 (445)
117 PRK11034 clpA ATP-dependent Cl 97.7 0.00017 3.6E-09 81.8 11.3 158 177-352 186-362 (758)
118 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00031 6.8E-09 81.8 13.7 157 177-351 173-348 (852)
119 PRK06871 DNA polymerase III su 97.7 0.0018 3.9E-08 66.0 17.0 177 186-382 11-200 (325)
120 COG1373 Predicted ATPase (AAA+ 97.7 0.00063 1.4E-08 71.9 13.9 147 204-384 39-191 (398)
121 PF13855 LRR_8: Leucine rich r 97.7 2.2E-05 4.8E-10 58.9 2.1 56 594-650 1-59 (61)
122 PLN03210 Resistant to P. syrin 97.7 6.2E-05 1.4E-09 91.0 6.8 116 528-647 588-711 (1153)
123 PRK06090 DNA polymerase III su 97.7 0.002 4.3E-08 65.5 16.6 93 281-385 107-201 (319)
124 PRK08769 DNA polymerase III su 97.7 0.0016 3.5E-08 66.2 16.0 96 281-386 112-209 (319)
125 PRK08116 hypothetical protein; 97.7 0.00019 4.1E-09 71.6 9.0 102 204-321 116-220 (268)
126 PTZ00454 26S protease regulato 97.6 0.0018 3.8E-08 68.3 16.5 177 177-379 145-351 (398)
127 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0012 2.6E-08 65.9 14.6 110 204-321 23-160 (262)
128 CHL00176 ftsH cell division pr 97.6 0.001 2.2E-08 74.2 15.1 176 177-378 183-387 (638)
129 PRK10865 protein disaggregatio 97.6 0.00038 8.3E-09 80.8 12.2 156 177-351 178-353 (857)
130 KOG4658 Apoptotic ATPase [Sign 97.6 1.7E-05 3.6E-10 91.3 0.9 63 585-648 559-626 (889)
131 TIGR00602 rad24 checkpoint pro 97.6 0.00035 7.6E-09 77.3 10.6 52 175-226 82-134 (637)
132 PRK10536 hypothetical protein; 97.6 0.0007 1.5E-08 65.7 11.3 135 177-322 55-213 (262)
133 smart00382 AAA ATPases associa 97.6 0.0004 8.6E-09 61.8 9.1 88 203-295 3-91 (148)
134 TIGR03689 pup_AAA proteasome A 97.6 0.00046 1E-08 74.3 11.0 166 177-352 182-378 (512)
135 TIGR02639 ClpA ATP-dependent C 97.6 0.00081 1.8E-08 77.2 13.6 119 177-308 454-579 (731)
136 PF13177 DNA_pol3_delta2: DNA 97.5 0.0012 2.5E-08 60.6 11.7 139 181-339 1-161 (162)
137 PTZ00361 26 proteosome regulat 97.5 0.00062 1.4E-08 72.2 11.1 155 177-352 183-367 (438)
138 KOG0472 Leucine-rich repeat pr 97.5 2.2E-05 4.8E-10 78.7 0.1 66 577-644 232-301 (565)
139 TIGR01241 FtsH_fam ATP-depende 97.5 0.0019 4.2E-08 70.8 15.3 184 176-385 54-267 (495)
140 PF13855 LRR_8: Leucine rich r 97.5 9.2E-05 2E-09 55.5 3.3 43 584-626 12-59 (61)
141 PRK07993 DNA polymerase III su 97.5 0.0037 7.9E-08 64.4 15.9 95 280-383 106-202 (334)
142 PRK08058 DNA polymerase III su 97.5 0.0016 3.6E-08 67.1 13.5 162 179-351 7-181 (329)
143 COG0542 clpA ATP-binding subun 97.5 0.00035 7.6E-09 77.7 8.6 119 177-308 491-619 (786)
144 PRK08939 primosomal protein Dn 97.4 0.00068 1.5E-08 68.8 9.6 121 181-320 135-259 (306)
145 PRK13531 regulatory ATPase Rav 97.4 0.0005 1.1E-08 72.7 8.8 153 178-351 21-193 (498)
146 PRK10865 protein disaggregatio 97.4 0.0012 2.6E-08 76.7 12.7 136 177-321 568-720 (857)
147 KOG0472 Leucine-rich repeat pr 97.4 2.7E-05 5.8E-10 78.1 -0.7 108 550-658 431-546 (565)
148 PRK08118 topology modulation p 97.4 7E-05 1.5E-09 69.1 1.9 35 204-238 3-37 (167)
149 TIGR00763 lon ATP-dependent pr 97.4 0.015 3.3E-07 67.2 21.2 163 177-352 320-505 (775)
150 PRK06964 DNA polymerase III su 97.4 0.0077 1.7E-07 61.9 16.3 93 281-385 131-225 (342)
151 PLN00113 leucine-rich repeat r 97.4 0.00015 3.3E-09 86.9 4.7 62 587-648 179-244 (968)
152 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0011 2.3E-08 77.4 11.3 121 177-308 565-693 (852)
153 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0033 7.1E-08 66.9 13.4 176 177-378 190-395 (802)
154 KOG0741 AAA+-type ATPase [Post 97.3 0.0059 1.3E-07 63.9 14.4 149 200-375 536-704 (744)
155 PRK07952 DNA replication prote 97.3 0.0035 7.6E-08 61.3 12.3 102 203-321 100-204 (244)
156 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0009 2E-08 77.5 9.5 134 177-321 566-718 (852)
157 PRK10787 DNA-binding ATP-depen 97.3 0.0019 4.1E-08 74.0 12.0 163 177-352 322-506 (784)
158 PRK08181 transposase; Validate 97.3 0.00073 1.6E-08 67.1 7.5 99 204-321 108-208 (269)
159 COG0470 HolB ATPase involved i 97.3 0.0017 3.6E-08 67.3 10.6 143 178-338 2-167 (325)
160 PF04665 Pox_A32: Poxvirus A32 97.3 0.00044 9.6E-09 66.7 5.7 35 204-241 15-49 (241)
161 PRK07261 topology modulation p 97.3 0.00056 1.2E-08 63.4 6.2 35 204-238 2-36 (171)
162 PRK12377 putative replication 97.3 0.00048 1E-08 67.4 6.0 101 203-321 102-205 (248)
163 KOG2228 Origin recognition com 97.2 0.0025 5.4E-08 63.1 10.7 172 178-352 25-219 (408)
164 PF10443 RNA12: RNA12 protein; 97.2 0.028 6E-07 58.4 18.5 206 182-402 1-297 (431)
165 PF07693 KAP_NTPase: KAP famil 97.2 0.016 3.5E-07 59.9 17.0 46 183-229 2-47 (325)
166 PF01695 IstB_IS21: IstB-like 97.2 0.0007 1.5E-08 63.0 5.9 100 203-321 48-149 (178)
167 PF02562 PhoH: PhoH-like prote 97.2 0.0017 3.6E-08 61.3 8.2 131 180-321 3-155 (205)
168 COG2607 Predicted ATPase (AAA+ 97.2 0.0012 2.5E-08 62.3 7.0 111 172-308 55-166 (287)
169 PF14532 Sigma54_activ_2: Sigm 97.1 0.00032 6.9E-09 62.6 3.1 108 180-321 1-109 (138)
170 PRK06526 transposase; Provisio 97.1 0.00086 1.9E-08 66.1 6.4 99 203-321 99-200 (254)
171 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.4E-08 62.6 6.9 113 203-323 3-117 (190)
172 PRK12608 transcription termina 97.1 0.0043 9.3E-08 63.7 11.4 104 185-293 119-231 (380)
173 COG2812 DnaX DNA polymerase II 97.1 0.0023 5E-08 68.6 9.8 189 177-380 16-215 (515)
174 PRK09183 transposase/IS protei 97.1 0.0021 4.5E-08 63.8 8.8 99 204-321 104-205 (259)
175 PF00158 Sigma54_activat: Sigm 97.1 0.0022 4.7E-08 59.0 8.3 133 179-322 1-144 (168)
176 PF07728 AAA_5: AAA domain (dy 97.1 0.00022 4.9E-09 63.6 1.7 87 205-306 2-89 (139)
177 CHL00095 clpC Clp protease ATP 97.1 0.0023 5E-08 74.4 10.5 121 177-308 509-637 (821)
178 COG2884 FtsE Predicted ATPase 97.1 0.0035 7.7E-08 57.0 9.2 122 203-329 29-204 (223)
179 PRK06921 hypothetical protein; 97.1 0.0026 5.7E-08 63.3 9.5 37 203-241 118-154 (266)
180 COG1222 RPT1 ATP-dependent 26S 97.1 0.022 4.7E-07 57.2 15.5 186 178-390 152-372 (406)
181 PRK11034 clpA ATP-dependent Cl 97.1 0.0017 3.6E-08 73.9 9.0 118 178-307 459-582 (758)
182 PLN00113 leucine-rich repeat r 97.1 0.00055 1.2E-08 82.2 5.5 120 530-650 141-270 (968)
183 KOG0991 Replication factor C, 97.1 0.012 2.6E-07 55.2 12.7 105 176-306 26-137 (333)
184 PRK08699 DNA polymerase III su 97.0 0.0075 1.6E-07 61.9 12.5 71 281-351 112-184 (325)
185 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00055 1.2E-08 69.8 4.0 51 177-227 51-103 (361)
186 COG0466 Lon ATP-dependent Lon 97.0 0.0036 7.9E-08 68.1 10.3 165 176-353 322-509 (782)
187 CHL00195 ycf46 Ycf46; Provisio 97.0 0.011 2.4E-07 63.9 14.0 179 177-379 228-429 (489)
188 KOG1514 Origin recognition com 97.0 0.023 4.9E-07 61.9 15.9 204 178-387 397-623 (767)
189 TIGR02974 phageshock_pspF psp 97.0 0.011 2.4E-07 60.9 13.3 130 179-321 1-143 (329)
190 TIGR01243 CDC48 AAA family ATP 97.0 0.0077 1.7E-07 69.4 13.4 178 177-380 178-382 (733)
191 KOG0618 Serine/threonine phosp 97.0 0.00016 3.5E-09 80.0 -0.2 84 545-630 374-465 (1081)
192 COG0542 clpA ATP-binding subun 97.0 0.0018 3.9E-08 72.2 7.7 157 177-351 170-345 (786)
193 TIGR02902 spore_lonB ATP-depen 96.9 0.0034 7.4E-08 69.0 9.4 45 177-225 65-109 (531)
194 PF14580 LRR_9: Leucine-rich r 96.9 0.00073 1.6E-08 62.2 3.5 98 530-650 20-123 (175)
195 PRK04132 replication factor C 96.9 0.027 5.8E-07 64.5 16.4 160 208-387 570-733 (846)
196 TIGR01243 CDC48 AAA family ATP 96.9 0.018 3.8E-07 66.5 15.2 177 177-379 453-657 (733)
197 PTZ00494 tuzin-like protein; P 96.9 0.091 2E-06 54.5 18.2 171 171-352 365-544 (664)
198 COG1136 SalX ABC-type antimicr 96.8 0.0093 2E-07 57.0 10.3 62 268-329 146-210 (226)
199 TIGR02237 recomb_radB DNA repa 96.8 0.0035 7.7E-08 60.3 7.8 48 201-252 11-58 (209)
200 KOG1969 DNA replication checkp 96.8 0.0049 1.1E-07 67.1 9.2 83 200-303 324-408 (877)
201 PF13207 AAA_17: AAA domain; P 96.8 0.00086 1.9E-08 58.2 3.0 22 204-225 1-22 (121)
202 PRK06835 DNA replication prote 96.8 0.0021 4.6E-08 65.7 6.2 102 203-321 184-288 (329)
203 KOG0744 AAA+-type ATPase [Post 96.8 0.0098 2.1E-07 58.6 10.1 82 202-293 177-261 (423)
204 PRK09361 radB DNA repair and r 96.8 0.0057 1.2E-07 59.6 8.9 45 202-250 23-67 (225)
205 cd03214 ABC_Iron-Siderophores_ 96.8 0.013 2.7E-07 54.9 10.7 119 203-325 26-161 (180)
206 PRK15429 formate hydrogenlyase 96.8 0.025 5.4E-07 64.8 15.1 135 177-322 376-521 (686)
207 cd01120 RecA-like_NTPases RecA 96.7 0.0063 1.4E-07 55.6 8.3 40 204-246 1-40 (165)
208 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0052 1.1E-07 60.3 8.2 50 202-251 19-71 (235)
209 KOG0734 AAA+-type ATPase conta 96.7 0.0043 9.4E-08 64.9 7.4 52 177-228 304-363 (752)
210 PLN03150 hypothetical protein; 96.7 0.001 2.3E-08 74.8 3.2 46 592-637 464-511 (623)
211 KOG0731 AAA+-type ATPase conta 96.7 0.039 8.4E-07 61.5 15.0 182 177-383 311-522 (774)
212 KOG0618 Serine/threonine phosp 96.7 0.00025 5.4E-09 78.6 -1.8 66 587-653 59-127 (1081)
213 cd01393 recA_like RecA is a b 96.7 0.012 2.7E-07 57.2 10.3 91 202-293 19-125 (226)
214 PRK06696 uridine kinase; Valid 96.7 0.0022 4.7E-08 62.4 4.8 45 181-226 2-46 (223)
215 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.013 2.9E-07 52.5 9.5 103 203-325 27-130 (144)
216 cd03247 ABCC_cytochrome_bd The 96.6 0.012 2.5E-07 55.0 9.3 117 203-326 29-161 (178)
217 PLN03150 hypothetical protein; 96.6 0.0026 5.6E-08 71.7 5.7 63 588-650 434-500 (623)
218 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.011 2.3E-07 57.5 9.0 121 203-325 31-202 (254)
219 COG1223 Predicted ATPase (AAA+ 96.6 0.019 4.1E-07 54.9 10.2 175 177-378 121-318 (368)
220 KOG0730 AAA+-type ATPase [Post 96.6 0.016 3.4E-07 62.7 10.9 154 200-379 466-637 (693)
221 KOG0735 AAA+-type ATPase [Post 96.6 0.017 3.7E-07 62.8 11.1 152 202-378 431-608 (952)
222 TIGR03499 FlhF flagellar biosy 96.6 0.0097 2.1E-07 59.9 8.9 88 201-291 193-281 (282)
223 PF00448 SRP54: SRP54-type pro 96.6 0.0078 1.7E-07 57.0 7.6 88 202-292 1-93 (196)
224 TIGR01817 nifA Nif-specific re 96.6 0.032 6.9E-07 62.0 13.7 134 176-322 195-341 (534)
225 COG1875 NYN ribonuclease and A 96.5 0.0059 1.3E-07 61.2 6.9 133 180-321 227-387 (436)
226 cd03222 ABC_RNaseL_inhibitor T 96.5 0.013 2.7E-07 54.5 8.8 102 203-326 26-136 (177)
227 PF00560 LRR_1: Leucine Rich R 96.5 0.00072 1.6E-08 38.8 0.3 18 596-613 2-19 (22)
228 cd03238 ABC_UvrA The excision 96.5 0.012 2.6E-07 54.6 8.6 114 203-326 22-153 (176)
229 cd01394 radB RadB. The archaea 96.5 0.012 2.5E-07 57.1 9.0 43 201-246 18-60 (218)
230 cd03216 ABC_Carb_Monos_I This 96.5 0.012 2.5E-07 54.1 8.4 115 203-325 27-145 (163)
231 cd03228 ABCC_MRP_Like The MRP 96.5 0.017 3.6E-07 53.6 9.3 116 203-326 29-159 (171)
232 cd03223 ABCD_peroxisomal_ALDP 96.5 0.021 4.5E-07 52.6 9.8 115 203-325 28-151 (166)
233 PRK11608 pspF phage shock prot 96.4 0.0071 1.5E-07 62.3 7.2 135 177-322 6-151 (326)
234 COG1484 DnaC DNA replication p 96.4 0.01 2.2E-07 58.7 7.9 80 203-300 106-185 (254)
235 PRK13695 putative NTPase; Prov 96.4 0.0039 8.5E-08 58.0 4.7 24 204-227 2-25 (174)
236 KOG0733 Nuclear AAA ATPase (VC 96.4 0.047 1E-06 58.5 12.8 155 202-379 545-718 (802)
237 PF03215 Rad17: Rad17 cell cyc 96.4 0.029 6.3E-07 61.1 11.5 59 177-240 19-78 (519)
238 cd00983 recA RecA is a bacter 96.4 0.0075 1.6E-07 61.2 6.5 84 201-292 54-143 (325)
239 PRK15455 PrkA family serine pr 96.3 0.0033 7.1E-08 67.6 4.0 50 178-227 77-128 (644)
240 COG1126 GlnQ ABC-type polar am 96.3 0.023 5.1E-07 53.1 9.0 121 203-327 29-201 (240)
241 TIGR01650 PD_CobS cobaltochela 96.3 0.1 2.2E-06 53.0 14.3 64 177-252 45-108 (327)
242 PRK11889 flhF flagellar biosyn 96.3 0.027 5.8E-07 58.2 10.3 90 201-293 240-331 (436)
243 KOG2004 Mitochondrial ATP-depe 96.3 0.021 4.6E-07 62.2 9.9 163 176-352 410-596 (906)
244 TIGR02238 recomb_DMC1 meiotic 96.3 0.017 3.6E-07 58.9 8.9 58 201-259 95-155 (313)
245 PRK05800 cobU adenosylcobinami 96.3 0.0027 5.9E-08 58.6 2.8 80 204-291 3-85 (170)
246 TIGR02012 tigrfam_recA protein 96.3 0.015 3.3E-07 59.0 8.3 86 200-293 53-144 (321)
247 PF08423 Rad51: Rad51; InterP 96.3 0.0078 1.7E-07 59.6 6.1 55 203-258 39-96 (256)
248 PRK14722 flhF flagellar biosyn 96.3 0.014 3E-07 60.6 8.0 89 203-294 138-227 (374)
249 PRK05439 pantothenate kinase; 96.3 0.021 4.6E-07 57.7 9.1 82 199-283 83-166 (311)
250 PRK05541 adenylylsulfate kinas 96.3 0.0058 1.3E-07 57.0 4.9 36 201-239 6-41 (176)
251 PRK06067 flagellar accessory p 96.2 0.028 6.1E-07 55.1 9.8 115 201-321 24-164 (234)
252 COG1618 Predicted nucleotide k 96.2 0.004 8.6E-08 55.1 3.3 27 203-229 6-32 (179)
253 cd03230 ABC_DR_subfamily_A Thi 96.2 0.015 3.3E-07 54.0 7.5 117 203-326 27-159 (173)
254 TIGR02329 propionate_PrpR prop 96.2 0.041 8.8E-07 60.3 11.9 48 177-226 212-259 (526)
255 PLN00020 ribulose bisphosphate 96.2 0.015 3.3E-07 59.2 7.7 29 199-227 145-173 (413)
256 COG4608 AppF ABC-type oligopep 96.2 0.018 3.9E-07 56.0 7.9 123 203-329 40-177 (268)
257 cd01133 F1-ATPase_beta F1 ATP 96.2 0.023 4.9E-07 56.2 8.6 87 204-292 71-173 (274)
258 PHA02244 ATPase-like protein 96.2 0.028 6.1E-07 57.6 9.5 22 204-225 121-142 (383)
259 PRK09270 nucleoside triphospha 96.2 0.026 5.6E-07 55.1 9.0 28 200-227 31-58 (229)
260 KOG0728 26S proteasome regulat 96.1 0.19 4.1E-06 47.8 14.0 153 178-351 147-330 (404)
261 COG4618 ArpD ABC-type protease 96.1 0.039 8.4E-07 58.0 10.4 21 204-224 364-384 (580)
262 PRK14974 cell division protein 96.1 0.051 1.1E-06 55.8 11.4 90 201-294 139-234 (336)
263 PRK07132 DNA polymerase III su 96.1 0.28 6E-06 49.6 16.5 133 202-351 18-161 (299)
264 TIGR00554 panK_bact pantothena 96.1 0.026 5.5E-07 56.7 8.9 25 200-224 60-84 (290)
265 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.0088 1.9E-07 54.0 5.0 116 203-322 3-138 (159)
266 PRK00771 signal recognition pa 96.1 0.057 1.2E-06 57.5 11.9 89 201-293 94-186 (437)
267 PRK13539 cytochrome c biogenes 96.1 0.039 8.4E-07 52.9 9.8 63 275-340 138-202 (207)
268 PRK10733 hflB ATP-dependent me 96.1 0.048 1E-06 61.6 12.0 156 177-353 152-336 (644)
269 PF13604 AAA_30: AAA domain; P 96.1 0.0048 1E-07 58.5 3.4 104 203-322 19-131 (196)
270 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.4E-08 36.5 0.9 22 617-639 1-22 (22)
271 PRK15370 E3 ubiquitin-protein 96.1 0.0096 2.1E-07 67.9 6.3 104 527-637 197-303 (754)
272 PRK09354 recA recombinase A; P 96.1 0.016 3.4E-07 59.4 7.2 86 200-293 58-149 (349)
273 cd03229 ABC_Class3 This class 96.0 0.019 4.1E-07 53.6 7.2 120 203-326 27-165 (178)
274 cd01131 PilT Pilus retraction 96.0 0.0086 1.9E-07 57.0 4.9 110 204-325 3-112 (198)
275 KOG0743 AAA+-type ATPase [Post 96.0 0.7 1.5E-05 48.3 18.8 24 203-226 236-259 (457)
276 PRK04301 radA DNA repair and r 96.0 0.037 8E-07 56.9 9.9 57 201-258 101-160 (317)
277 PRK07667 uridine kinase; Provi 96.0 0.0089 1.9E-07 56.6 4.9 40 186-227 3-42 (193)
278 KOG3665 ZYG-1-like serine/thre 96.0 0.0037 8E-08 70.5 2.6 84 551-651 145-231 (699)
279 cd03246 ABCC_Protease_Secretio 96.0 0.029 6.3E-07 52.1 8.2 119 203-326 29-160 (173)
280 COG1419 FlhF Flagellar GTP-bin 96.0 0.025 5.4E-07 58.3 8.2 88 202-293 203-292 (407)
281 cd02025 PanK Pantothenate kina 95.9 0.026 5.6E-07 54.6 7.8 23 204-226 1-23 (220)
282 PF05659 RPW8: Arabidopsis bro 95.9 0.14 3E-06 45.7 11.7 84 4-89 2-86 (147)
283 COG0714 MoxR-like ATPases [Gen 95.9 0.015 3.3E-07 60.1 6.5 107 178-306 25-136 (329)
284 COG1116 TauB ABC-type nitrate/ 95.9 0.037 8E-07 53.2 8.4 21 204-224 31-51 (248)
285 cd03215 ABC_Carb_Monos_II This 95.9 0.076 1.7E-06 49.7 10.7 24 203-226 27-50 (182)
286 PRK10867 signal recognition pa 95.9 0.042 9E-07 58.4 9.7 27 200-226 98-124 (433)
287 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.088 1.9E-06 50.5 11.3 23 203-225 35-57 (207)
288 KOG2035 Replication factor C, 95.9 0.054 1.2E-06 52.4 9.2 206 179-404 15-258 (351)
289 PF03969 AFG1_ATPase: AFG1-lik 95.9 0.033 7.2E-07 57.9 8.7 84 200-298 60-143 (362)
290 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.024 5.3E-07 53.1 7.0 22 204-225 1-22 (183)
291 TIGR00390 hslU ATP-dependent p 95.8 0.018 3.8E-07 60.0 6.3 82 177-258 12-104 (441)
292 PLN03186 DNA repair protein RA 95.8 0.058 1.3E-06 55.6 10.1 58 201-259 122-182 (342)
293 PF14580 LRR_9: Leucine-rich r 95.8 0.0038 8.2E-08 57.5 1.3 57 592-650 40-98 (175)
294 cd03233 ABC_PDR_domain1 The pl 95.8 0.067 1.4E-06 51.1 10.0 24 203-226 34-57 (202)
295 PF12775 AAA_7: P-loop contain 95.8 0.01 2.3E-07 59.2 4.5 92 187-296 23-114 (272)
296 PF13238 AAA_18: AAA domain; P 95.8 0.0065 1.4E-07 53.1 2.7 21 205-225 1-21 (129)
297 KOG0739 AAA+-type ATPase [Post 95.8 0.12 2.7E-06 50.4 11.3 177 177-379 133-335 (439)
298 cd03251 ABCC_MsbA MsbA is an e 95.8 0.12 2.5E-06 50.7 11.8 23 203-225 29-51 (234)
299 PRK12723 flagellar biosynthesi 95.8 0.052 1.1E-06 56.9 9.6 91 202-294 174-266 (388)
300 cd01122 GP4d_helicase GP4d_hel 95.8 0.1 2.2E-06 52.4 11.6 52 203-258 31-82 (271)
301 PRK13538 cytochrome c biogenes 95.8 0.088 1.9E-06 50.3 10.6 23 203-225 28-50 (204)
302 PF03308 ArgK: ArgK protein; 95.7 0.017 3.8E-07 55.8 5.5 64 185-251 14-77 (266)
303 TIGR00959 ffh signal recogniti 95.7 0.054 1.2E-06 57.5 9.7 26 201-226 98-123 (428)
304 PRK05022 anaerobic nitric oxid 95.7 0.033 7.1E-07 61.3 8.5 134 176-322 186-332 (509)
305 PF00485 PRK: Phosphoribulokin 95.7 0.0075 1.6E-07 57.2 3.0 80 204-286 1-87 (194)
306 PLN03187 meiotic recombination 95.7 0.076 1.7E-06 54.6 10.4 59 201-260 125-186 (344)
307 TIGR02858 spore_III_AA stage I 95.7 0.12 2.5E-06 51.5 11.4 127 186-325 98-232 (270)
308 PTZ00035 Rad51 protein; Provis 95.7 0.098 2.1E-06 54.0 11.2 58 201-259 117-177 (337)
309 TIGR02239 recomb_RAD51 DNA rep 95.7 0.07 1.5E-06 54.6 10.1 57 201-258 95-154 (316)
310 COG1703 ArgK Putative periplas 95.7 0.016 3.5E-07 56.8 5.1 64 187-253 38-101 (323)
311 PRK06547 hypothetical protein; 95.7 0.01 2.3E-07 54.8 3.7 27 200-226 13-39 (172)
312 PF13671 AAA_33: AAA domain; P 95.7 0.0088 1.9E-07 53.5 3.1 22 204-225 1-22 (143)
313 PRK05480 uridine/cytidine kina 95.7 0.0094 2E-07 57.3 3.5 26 201-226 5-30 (209)
314 cd02019 NK Nucleoside/nucleoti 95.7 0.0079 1.7E-07 46.2 2.4 22 204-225 1-22 (69)
315 COG0563 Adk Adenylate kinase a 95.7 0.014 2.9E-07 54.3 4.4 24 204-227 2-25 (178)
316 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.031 6.7E-07 50.9 6.7 116 203-327 26-145 (157)
317 PRK15387 E3 ubiquitin-protein 95.6 0.015 3.3E-07 66.1 5.6 57 584-642 293-367 (788)
318 COG1102 Cmk Cytidylate kinase 95.6 0.016 3.5E-07 51.4 4.5 44 204-261 2-45 (179)
319 PF07724 AAA_2: AAA domain (Cd 95.6 0.0074 1.6E-07 55.7 2.6 90 202-306 3-103 (171)
320 PRK08233 hypothetical protein; 95.6 0.0093 2E-07 55.9 3.3 25 202-226 3-27 (182)
321 PRK12727 flagellar biosynthesi 95.6 0.032 7E-07 59.9 7.6 89 202-293 350-439 (559)
322 COG1124 DppF ABC-type dipeptid 95.6 0.078 1.7E-06 50.6 9.3 56 273-328 150-208 (252)
323 PTZ00088 adenylate kinase 1; P 95.6 0.0088 1.9E-07 58.0 3.1 23 204-226 8-30 (229)
324 PRK12724 flagellar biosynthesi 95.6 0.031 6.7E-07 58.5 7.2 25 202-226 223-247 (432)
325 TIGR02236 recomb_radA DNA repa 95.6 0.076 1.7E-06 54.5 10.2 57 201-258 94-153 (310)
326 KOG0924 mRNA splicing factor A 95.6 0.087 1.9E-06 57.0 10.5 126 187-322 362-510 (1042)
327 cd03263 ABC_subfamily_A The AB 95.6 0.068 1.5E-06 51.8 9.3 24 203-226 29-52 (220)
328 cd03244 ABCC_MRP_domain2 Domai 95.6 0.18 3.9E-06 48.8 12.2 23 203-225 31-53 (221)
329 cd03115 SRP The signal recogni 95.6 0.075 1.6E-06 49.3 9.2 24 204-227 2-25 (173)
330 COG2274 SunT ABC-type bacterio 95.6 0.085 1.8E-06 59.8 11.0 24 203-226 500-523 (709)
331 cd03254 ABCC_Glucan_exporter_l 95.6 0.12 2.5E-06 50.5 10.9 24 203-226 30-53 (229)
332 cd03231 ABC_CcmA_heme_exporter 95.5 0.089 1.9E-06 50.2 9.8 23 203-225 27-49 (201)
333 TIGR03522 GldA_ABC_ATP gliding 95.5 0.093 2E-06 53.6 10.4 23 203-225 29-51 (301)
334 PF00006 ATP-synt_ab: ATP synt 95.5 0.038 8.2E-07 52.9 7.0 81 204-291 17-114 (215)
335 COG4133 CcmA ABC-type transpor 95.5 0.13 2.7E-06 47.2 9.8 50 274-323 140-191 (209)
336 PRK13543 cytochrome c biogenes 95.5 0.12 2.5E-06 49.9 10.6 24 203-226 38-61 (214)
337 TIGR00235 udk uridine kinase. 95.5 0.011 2.4E-07 56.7 3.4 25 201-225 5-29 (207)
338 TIGR01069 mutS2 MutS2 family p 95.5 0.0096 2.1E-07 68.2 3.4 112 281-403 401-519 (771)
339 PRK05703 flhF flagellar biosyn 95.5 0.075 1.6E-06 56.7 9.9 88 203-293 222-310 (424)
340 COG0468 RecA RecA/RadA recombi 95.5 0.056 1.2E-06 53.6 8.3 91 200-293 58-152 (279)
341 cd03245 ABCC_bacteriocin_expor 95.5 0.099 2.2E-06 50.6 10.1 23 203-225 31-53 (220)
342 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.052 1.1E-06 51.7 7.9 119 203-326 27-168 (200)
343 PRK06762 hypothetical protein; 95.5 0.01 2.2E-07 54.7 2.9 24 202-225 2-25 (166)
344 PF12799 LRR_4: Leucine Rich r 95.4 0.0082 1.8E-07 41.3 1.6 36 616-652 1-36 (44)
345 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.1 2.2E-06 50.1 9.8 23 202-224 29-51 (213)
346 TIGR00150 HI0065_YjeE ATPase, 95.4 0.02 4.3E-07 50.0 4.3 42 184-227 6-47 (133)
347 cd01125 repA Hexameric Replica 95.4 0.11 2.5E-06 50.9 10.3 22 204-225 3-24 (239)
348 PRK05917 DNA polymerase III su 95.4 0.22 4.9E-06 49.7 12.2 131 186-339 6-154 (290)
349 PTZ00301 uridine kinase; Provi 95.4 0.012 2.6E-07 56.2 3.2 25 202-226 3-27 (210)
350 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.12 2.7E-06 50.3 10.4 114 202-321 20-165 (229)
351 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.093 2E-06 51.5 9.5 49 201-254 20-68 (237)
352 PRK06002 fliI flagellum-specif 95.4 0.076 1.6E-06 56.3 9.2 86 203-292 166-264 (450)
353 COG0396 sufC Cysteine desulfur 95.4 0.15 3.2E-06 48.3 10.0 60 274-333 154-215 (251)
354 PRK15386 type III secretion pr 95.4 0.02 4.3E-07 59.7 4.8 59 584-649 106-186 (426)
355 PRK15387 E3 ubiquitin-protein 95.3 0.015 3.3E-07 66.1 4.2 63 584-650 393-455 (788)
356 cd03252 ABCC_Hemolysin The ABC 95.3 0.17 3.7E-06 49.6 11.3 52 275-326 149-201 (237)
357 KOG0735 AAA+-type ATPase [Post 95.3 0.53 1.2E-05 51.7 15.3 177 179-381 669-872 (952)
358 PF00910 RNA_helicase: RNA hel 95.3 0.0093 2E-07 50.4 1.9 22 205-226 1-22 (107)
359 COG1120 FepC ABC-type cobalami 95.3 0.11 2.3E-06 50.9 9.4 59 269-328 143-205 (258)
360 PF06309 Torsin: Torsin; Inte 95.3 0.027 5.8E-07 48.3 4.5 48 178-225 26-76 (127)
361 PRK15370 E3 ubiquitin-protein 95.3 0.037 8.1E-07 63.2 7.1 51 585-637 337-387 (754)
362 cd03253 ABCC_ATM1_transporter 95.3 0.19 4.1E-06 49.3 11.3 53 274-326 147-200 (236)
363 PRK10820 DNA-binding transcrip 95.3 0.042 9.1E-07 60.5 7.3 133 177-322 204-349 (520)
364 PF10236 DAP3: Mitochondrial r 95.3 0.69 1.5E-05 47.3 15.6 49 333-382 258-306 (309)
365 cd03237 ABC_RNaseL_inhibitor_d 95.3 0.09 1.9E-06 51.9 8.9 124 203-326 26-180 (246)
366 COG0465 HflB ATP-dependent Zn 95.3 0.21 4.5E-06 54.7 12.3 181 174-380 147-356 (596)
367 PRK05201 hslU ATP-dependent pr 95.2 0.036 7.9E-07 57.8 6.2 82 177-258 15-107 (443)
368 TIGR01818 ntrC nitrogen regula 95.2 0.19 4.1E-06 54.8 12.4 134 178-322 135-279 (463)
369 PRK12726 flagellar biosynthesi 95.2 0.068 1.5E-06 55.1 8.1 90 201-293 205-296 (407)
370 PRK08533 flagellar accessory p 95.2 0.1 2.2E-06 50.8 9.2 47 203-254 25-71 (230)
371 cd03232 ABC_PDR_domain2 The pl 95.2 0.083 1.8E-06 50.0 8.3 23 203-225 34-56 (192)
372 TIGR01360 aden_kin_iso1 adenyl 95.2 0.014 2.9E-07 55.0 3.0 24 202-225 3-26 (188)
373 cd03250 ABCC_MRP_domain1 Domai 95.2 0.24 5.3E-06 47.2 11.6 25 203-227 32-56 (204)
374 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.11 2.5E-06 50.9 9.5 24 203-226 30-53 (238)
375 PRK04040 adenylate kinase; Pro 95.2 0.016 3.4E-07 54.5 3.1 25 202-226 2-26 (188)
376 PF13481 AAA_25: AAA domain; P 95.2 0.097 2.1E-06 49.4 8.6 41 204-244 34-81 (193)
377 cd01121 Sms Sms (bacterial rad 95.2 0.14 3E-06 53.6 10.4 82 203-293 83-169 (372)
378 PRK06217 hypothetical protein; 95.2 0.032 7E-07 52.3 5.2 24 204-227 3-26 (183)
379 PRK03839 putative kinase; Prov 95.1 0.014 3E-07 54.6 2.7 23 204-226 2-24 (180)
380 COG0464 SpoVK ATPases of the A 95.1 0.22 4.8E-06 54.8 12.5 133 200-353 274-424 (494)
381 PRK08972 fliI flagellum-specif 95.1 0.085 1.8E-06 55.7 8.6 86 203-293 163-263 (444)
382 TIGR01188 drrA daunorubicin re 95.1 0.13 2.9E-06 52.4 10.0 23 203-225 20-42 (302)
383 PRK09544 znuC high-affinity zi 95.1 0.12 2.5E-06 51.2 9.3 24 203-226 31-54 (251)
384 TIGR00708 cobA cob(I)alamin ad 95.1 0.066 1.4E-06 49.0 6.8 116 203-322 6-140 (173)
385 cd03213 ABCG_EPDR ABCG transpo 95.1 0.11 2.4E-06 49.2 8.7 114 203-322 36-171 (194)
386 TIGR02868 CydC thiol reductant 95.1 0.12 2.5E-06 57.6 10.3 25 203-227 362-386 (529)
387 PRK14721 flhF flagellar biosyn 95.1 0.11 2.3E-06 54.9 9.3 87 202-291 191-278 (420)
388 TIGR00064 ftsY signal recognit 95.1 0.11 2.4E-06 51.9 9.0 89 201-293 71-165 (272)
389 KOG1051 Chaperone HSP104 and r 95.0 0.13 2.9E-06 58.6 10.4 117 178-306 563-684 (898)
390 cd03248 ABCC_TAP TAP, the Tran 95.0 0.25 5.5E-06 48.0 11.4 23 203-225 41-63 (226)
391 PHA00729 NTP-binding motif con 95.0 0.021 4.6E-07 54.6 3.5 25 201-225 16-40 (226)
392 COG0194 Gmk Guanylate kinase [ 95.0 0.025 5.4E-07 51.7 3.6 23 203-225 5-27 (191)
393 PRK14723 flhF flagellar biosyn 94.9 0.11 2.4E-06 58.6 9.4 57 202-259 185-242 (767)
394 cd02027 APSK Adenosine 5'-phos 94.9 0.11 2.4E-06 46.8 7.8 23 204-226 1-23 (149)
395 COG1936 Predicted nucleotide k 94.9 0.018 3.8E-07 51.9 2.5 20 204-223 2-21 (180)
396 PRK13647 cbiO cobalt transport 94.9 0.14 3E-06 51.6 9.3 23 203-225 32-54 (274)
397 COG1428 Deoxynucleoside kinase 94.9 0.017 3.8E-07 53.8 2.5 25 203-227 5-29 (216)
398 PRK06995 flhF flagellar biosyn 94.9 0.096 2.1E-06 56.3 8.4 87 203-292 257-344 (484)
399 COG0572 Udk Uridine kinase [Nu 94.9 0.024 5.1E-07 53.6 3.4 27 201-227 7-33 (218)
400 TIGR02322 phosphon_PhnN phosph 94.9 0.02 4.4E-07 53.5 3.0 24 203-226 2-25 (179)
401 PF13504 LRR_7: Leucine rich r 94.9 0.011 2.4E-07 31.4 0.6 16 617-633 2-17 (17)
402 TIGR03498 FliI_clade3 flagella 94.8 0.091 2E-06 55.5 8.0 87 203-293 141-241 (418)
403 KOG0736 Peroxisome assembly fa 94.8 0.14 3.1E-06 56.5 9.5 96 178-294 673-776 (953)
404 COG1066 Sms Predicted ATP-depe 94.8 0.13 2.9E-06 52.8 8.7 82 203-294 94-180 (456)
405 PRK09519 recA DNA recombinatio 94.8 0.11 2.3E-06 59.0 8.9 85 201-293 59-149 (790)
406 cd02023 UMPK Uridine monophosp 94.8 0.017 3.7E-07 55.0 2.4 22 204-225 1-22 (198)
407 PRK13537 nodulation ABC transp 94.8 0.19 4.2E-06 51.3 10.2 24 203-226 34-57 (306)
408 PRK10751 molybdopterin-guanine 94.8 0.029 6.3E-07 51.5 3.7 27 201-227 5-31 (173)
409 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.023 4.9E-07 54.2 3.1 119 203-329 30-158 (204)
410 PF03205 MobB: Molybdopterin g 94.8 0.042 9.2E-07 48.8 4.6 39 203-243 1-39 (140)
411 PF03266 NTPase_1: NTPase; In 94.8 0.021 4.5E-07 52.5 2.6 22 205-226 2-23 (168)
412 PRK00625 shikimate kinase; Pro 94.7 0.02 4.4E-07 52.9 2.5 22 204-225 2-23 (173)
413 PF03193 DUF258: Protein of un 94.7 0.047 1E-06 49.4 4.8 36 184-226 24-59 (161)
414 PRK00279 adk adenylate kinase; 94.7 0.053 1.1E-06 52.4 5.5 22 204-225 2-23 (215)
415 COG1131 CcmA ABC-type multidru 94.7 0.22 4.8E-06 50.4 10.2 24 203-226 32-55 (293)
416 KOG2170 ATPase of the AAA+ sup 94.7 0.087 1.9E-06 51.7 6.7 110 177-303 82-199 (344)
417 TIGR02314 ABC_MetN D-methionin 94.7 0.16 3.4E-06 52.7 9.2 54 274-327 150-206 (343)
418 PF08477 Miro: Miro-like prote 94.7 0.025 5.4E-07 48.6 2.9 23 205-227 2-24 (119)
419 COG2842 Uncharacterized ATPase 94.7 0.28 6.1E-06 48.4 10.3 121 176-308 71-191 (297)
420 PRK06793 fliI flagellum-specif 94.7 0.12 2.7E-06 54.6 8.4 88 203-294 157-258 (432)
421 TIGR03263 guanyl_kin guanylate 94.7 0.025 5.3E-07 52.9 3.0 23 203-225 2-24 (180)
422 PRK05922 type III secretion sy 94.7 0.18 3.9E-06 53.4 9.6 85 204-293 159-258 (434)
423 PF00154 RecA: recA bacterial 94.7 0.065 1.4E-06 54.3 6.1 84 202-293 53-142 (322)
424 PRK15424 propionate catabolism 94.6 0.081 1.8E-06 57.9 7.3 47 177-225 219-265 (538)
425 PRK00131 aroK shikimate kinase 94.6 0.025 5.3E-07 52.5 2.9 24 203-226 5-28 (175)
426 PRK07276 DNA polymerase III su 94.6 1 2.3E-05 45.2 14.5 70 280-350 102-173 (290)
427 cd02024 NRK1 Nicotinamide ribo 94.6 0.021 4.6E-07 53.4 2.4 22 204-225 1-22 (187)
428 PRK00409 recombination and DNA 94.6 0.018 3.9E-07 66.2 2.3 179 202-403 327-524 (782)
429 cd02021 GntK Gluconate kinase 94.6 0.022 4.8E-07 51.4 2.4 22 204-225 1-22 (150)
430 PRK14737 gmk guanylate kinase; 94.6 0.031 6.8E-07 52.4 3.5 25 201-225 3-27 (186)
431 cd04159 Arl10_like Arl10-like 94.6 0.38 8.2E-06 43.2 10.7 21 205-225 2-22 (159)
432 PRK11650 ugpC glycerol-3-phosp 94.6 0.17 3.6E-06 52.9 9.2 23 203-225 31-53 (356)
433 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.11 2.4E-06 51.7 7.5 39 202-243 36-74 (259)
434 KOG0532 Leucine-rich repeat (L 94.6 0.0023 4.9E-08 67.5 -4.6 94 555-650 144-244 (722)
435 cd03300 ABC_PotA_N PotA is an 94.6 0.17 3.8E-06 49.4 8.9 25 203-227 27-51 (232)
436 PF08298 AAA_PrkA: PrkA AAA do 94.6 0.049 1.1E-06 55.3 5.0 52 176-227 60-113 (358)
437 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.28 6.1E-06 60.1 11.8 27 201-227 1629-1655(2281)
438 PRK11160 cysteine/glutathione 94.6 0.24 5.2E-06 55.6 11.1 24 203-226 367-390 (574)
439 COG5635 Predicted NTPase (NACH 94.5 0.046 9.9E-07 63.8 5.4 195 204-402 224-445 (824)
440 cd00227 CPT Chloramphenicol (C 94.5 0.025 5.5E-07 52.6 2.7 23 203-225 3-25 (175)
441 PRK13657 cyclic beta-1,2-gluca 94.5 0.28 6.1E-06 55.3 11.5 24 203-226 362-385 (588)
442 COG4181 Predicted ABC-type tra 94.5 0.4 8.7E-06 43.2 9.8 85 246-330 122-215 (228)
443 PRK14738 gmk guanylate kinase; 94.5 0.034 7.3E-07 53.2 3.5 26 200-225 11-36 (206)
444 TIGR03258 PhnT 2-aminoethylpho 94.5 0.2 4.3E-06 52.4 9.4 23 203-225 32-54 (362)
445 cd01135 V_A-ATPase_B V/A-type 94.5 0.17 3.6E-06 50.0 8.3 90 204-293 71-177 (276)
446 PRK07594 type III secretion sy 94.4 0.16 3.4E-06 53.9 8.6 85 203-292 156-255 (433)
447 COG2019 AdkA Archaeal adenylat 94.4 0.036 7.8E-07 49.5 3.2 24 202-225 4-27 (189)
448 TIGR02857 CydD thiol reductant 94.4 0.36 7.8E-06 53.7 12.1 24 203-226 349-372 (529)
449 cd01136 ATPase_flagellum-secre 94.4 0.24 5.1E-06 50.6 9.6 86 203-293 70-170 (326)
450 cd02028 UMPK_like Uridine mono 94.4 0.026 5.6E-07 52.7 2.5 24 204-227 1-24 (179)
451 PRK09280 F0F1 ATP synthase sub 94.4 0.14 3.1E-06 54.4 8.2 87 204-292 146-248 (463)
452 PRK12678 transcription termina 94.4 0.1 2.2E-06 56.3 7.1 100 188-292 405-513 (672)
453 PRK04328 hypothetical protein; 94.4 0.14 3.1E-06 50.6 7.8 40 202-244 23-62 (249)
454 cd01428 ADK Adenylate kinase ( 94.4 0.1 2.2E-06 49.4 6.5 21 205-225 2-22 (194)
455 TIGR03375 type_I_sec_LssB type 94.4 0.29 6.3E-06 56.4 11.5 24 203-226 492-515 (694)
456 cd02020 CMPK Cytidine monophos 94.4 0.026 5.7E-07 50.6 2.4 23 204-226 1-23 (147)
457 cd03243 ABC_MutS_homologs The 94.4 0.053 1.1E-06 51.8 4.5 22 203-224 30-51 (202)
458 cd00071 GMPK Guanosine monopho 94.4 0.029 6.3E-07 49.8 2.5 21 205-225 2-22 (137)
459 PF13504 LRR_7: Leucine rich r 94.3 0.021 4.6E-07 30.3 1.0 17 594-610 1-17 (17)
460 COG0467 RAD55 RecA-superfamily 94.3 0.076 1.6E-06 52.9 5.8 50 201-255 22-71 (260)
461 PF05970 PIF1: PIF1-like helic 94.3 0.045 9.7E-07 57.4 4.3 26 202-227 22-47 (364)
462 cd00544 CobU Adenosylcobinamid 94.3 0.15 3.2E-06 47.0 7.2 78 205-291 2-82 (169)
463 TIGR00958 3a01208 Conjugate Tr 94.3 0.32 6.9E-06 56.1 11.6 25 203-227 508-532 (711)
464 COG2401 ABC-type ATPase fused 94.3 0.068 1.5E-06 54.7 5.2 61 272-332 515-578 (593)
465 TIGR01420 pilT_fam pilus retra 94.3 0.076 1.7E-06 55.2 5.9 109 203-323 123-231 (343)
466 PF07726 AAA_3: ATPase family 94.3 0.025 5.4E-07 48.6 1.8 22 205-226 2-23 (131)
467 PRK11000 maltose/maltodextrin 94.3 0.19 4.2E-06 52.8 8.9 23 203-225 30-52 (369)
468 PRK13765 ATP-dependent proteas 94.3 0.071 1.5E-06 59.5 5.9 76 176-260 30-105 (637)
469 PRK00889 adenylylsulfate kinas 94.3 0.039 8.4E-07 51.3 3.3 26 202-227 4-29 (175)
470 cd00820 PEPCK_HprK Phosphoenol 94.3 0.04 8.6E-07 46.0 3.0 21 203-223 16-36 (107)
471 PRK11388 DNA-binding transcrip 94.3 0.14 3E-06 58.3 8.5 132 177-322 325-467 (638)
472 COG1117 PstB ABC-type phosphat 94.3 0.21 4.7E-06 46.7 7.9 23 202-224 33-55 (253)
473 PRK11432 fbpC ferric transport 94.3 0.21 4.6E-06 52.0 9.1 23 203-225 33-55 (351)
474 KOG1970 Checkpoint RAD17-RFC c 94.2 0.27 5.8E-06 52.4 9.6 53 183-240 88-143 (634)
475 PRK08927 fliI flagellum-specif 94.2 0.19 4E-06 53.3 8.6 86 203-293 159-259 (442)
476 PRK10923 glnG nitrogen regulat 94.2 0.2 4.3E-06 54.8 9.3 48 177-226 138-185 (469)
477 TIGR01425 SRP54_euk signal rec 94.2 0.15 3.2E-06 54.0 7.8 27 201-227 99-125 (429)
478 PF01583 APS_kinase: Adenylyls 94.2 0.044 9.4E-07 49.3 3.4 35 203-240 3-37 (156)
479 PRK13536 nodulation factor exp 94.2 0.32 6.9E-06 50.4 10.3 24 203-226 68-91 (340)
480 PRK11176 lipid transporter ATP 94.2 0.2 4.4E-06 56.4 9.6 24 203-226 370-393 (582)
481 COG3840 ThiQ ABC-type thiamine 94.2 0.32 7E-06 44.3 8.7 34 203-240 26-59 (231)
482 TIGR01193 bacteriocin_ABC ABC- 94.2 0.32 6.9E-06 56.2 11.3 24 203-226 501-524 (708)
483 PRK13545 tagH teichoic acids e 94.2 0.4 8.7E-06 52.0 11.1 24 203-226 51-74 (549)
484 TIGR01351 adk adenylate kinase 94.2 0.049 1.1E-06 52.3 4.0 21 205-225 2-22 (210)
485 TIGR03496 FliI_clade1 flagella 94.2 0.2 4.2E-06 53.0 8.7 85 203-292 138-237 (411)
486 PRK13409 putative ATPase RIL; 94.2 0.23 5.1E-06 55.5 9.8 121 203-327 366-519 (590)
487 KOG4194 Membrane glycoprotein 94.2 0.087 1.9E-06 56.3 5.8 74 576-650 152-231 (873)
488 PRK03846 adenylylsulfate kinas 94.2 0.044 9.4E-07 52.2 3.5 27 200-226 22-48 (198)
489 PRK10078 ribose 1,5-bisphospho 94.1 0.038 8.3E-07 52.0 3.1 22 204-225 4-25 (186)
490 KOG0532 Leucine-rich repeat (L 94.1 0.022 4.7E-07 60.4 1.5 65 582-647 130-196 (722)
491 PRK11823 DNA repair protein Ra 94.1 0.25 5.4E-06 53.2 9.6 96 187-293 67-167 (446)
492 PRK00300 gmk guanylate kinase; 94.1 0.038 8.3E-07 52.9 3.1 23 203-225 6-28 (205)
493 KOG1532 GTPase XAB1, interacts 94.1 0.041 9E-07 53.0 3.1 30 200-229 17-46 (366)
494 PF01078 Mg_chelatase: Magnesi 94.1 0.078 1.7E-06 49.9 4.9 42 177-224 3-44 (206)
495 PRK09452 potA putrescine/sperm 94.1 0.25 5.4E-06 51.9 9.3 23 203-225 41-63 (375)
496 PRK13949 shikimate kinase; Pro 94.1 0.033 7.2E-07 51.4 2.5 23 204-226 3-25 (169)
497 PRK12339 2-phosphoglycerate ki 94.1 0.041 8.9E-07 52.0 3.2 24 202-225 3-26 (197)
498 PRK14527 adenylate kinase; Pro 94.1 0.039 8.3E-07 52.2 3.0 26 202-227 6-31 (191)
499 TIGR01192 chvA glucan exporter 94.1 0.45 9.7E-06 53.6 12.0 24 203-226 362-385 (585)
500 PF00625 Guanylate_kin: Guanyl 94.1 0.051 1.1E-06 50.9 3.8 37 203-242 3-39 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-79 Score=683.32 Aligned_cols=599 Identities=26% Similarity=0.359 Sum_probs=478.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcCCCccc
Q 006107 28 FVRQLQVRVDSELKKWEKKLKMIQAVLCDAEEKQLTDEAVKMWLDELQDLAYDAEDILDEFATQALESKLMAQNQDSSGQ 107 (661)
Q Consensus 28 ~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~Wl~~vr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~ 107 (661)
+....++ ++.+..|++.|..+++++.|++.++.....+..|...+++++|++||.++.|.......+..+.-.. ...
T Consensus 20 ~~~~~~~--~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~-~~~ 96 (889)
T KOG4658|consen 20 SECLDGK--DNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLST-RSV 96 (889)
T ss_pred HHHHhch--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh-hHH
Confidence 4555666 8889999999999999999999999888899999999999999999999999987765432211110 001
Q ss_pred ccccccccCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccCCCCCCCCCCCcCccccchhhHH
Q 006107 108 VLSFIPASLKPKAIMFNYSMGSKIKDITSRLEQLCQERIELGLQRLTGGASSTAAAAHQRPPSSSVPTEHEVFGREEDKA 187 (661)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~rl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~e~~ 187 (661)
..+... + ..+++.....+..+.+++..+.+....++.+.......... .+....+..+...... ||.+..++
T Consensus 97 ~~~~~c--~----~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~-VG~e~~~~ 168 (889)
T KOG4658|consen 97 ERQRLC--L----CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL-DPREKVETRPIQSESD-VGLETMLE 168 (889)
T ss_pred HHHHHh--h----hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc-cchhhcccCCCCcccc-ccHHHHHH
Confidence 111111 1 14557777788888888888888877777554322111100 0112223344444444 99999999
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc-cccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCC-
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA-VADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDL- 265 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~- 265 (661)
++.+.|..+.. .+++|+||||+||||||+.++|+.. +.. +|+.++||.||++++...++.+|+..++......
T Consensus 169 kl~~~L~~d~~----~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~ 243 (889)
T KOG4658|consen 169 KLWNRLMEDDV----GIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE 243 (889)
T ss_pred HHHHHhccCCC----CEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEEEEEcccccHHhHHHHHHHHhccCCcccc
Confidence 99999987642 7999999999999999999999998 776 9999999999999999999999999988744432
Q ss_pred -CCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcc-cCCCceeecCCCChHh
Q 006107 266 -NTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAST-MGPIEHYNLKSLLDDD 343 (661)
Q Consensus 266 -~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~-~~~~~~~~l~~L~~~e 343 (661)
...++++..+.+.|+++||+|||||||+. .+|+.+..+++...+||+|++|||+..|+.. +++...++++.|+++|
T Consensus 244 ~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 244 DKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred hhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 23468899999999999999999999998 5799999999999899999999999999998 7888899999999999
Q ss_pred HHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC-CHHHHHHHHcccccccc-----CCCCchHH
Q 006107 344 CWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT-RHAAWDDILDSKIWDLH-----QQSSILPV 417 (661)
Q Consensus 344 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~-~~~~w~~~~~~~~~~~~-----~~~~i~~~ 417 (661)
||+||++.++..... ..+..+++|++|+++|+|+|||+.++|++|+.+ +..+|+++.+...+... ..+.+..+
T Consensus 322 aW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred cHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 999999999765332 234489999999999999999999999999999 88899999998766532 23688999
Q ss_pred HHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHHHHHHHHHHhCCceeeccC--CCCc
Q 006107 418 LRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSS--GSSK 495 (661)
Q Consensus 418 l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~--~~~~ 495 (661)
|.+||++||++.|.||+|||+||+||.|+++.|+.+|+||||+.+..+..++++.|++|+.+|++++|++.... ....
T Consensus 401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~ 480 (889)
T KOG4658|consen 401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKET 480 (889)
T ss_pred hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeE
Confidence 99999999999999999999999999999999999999999999977789999999999999999999988773 3457
Q ss_pred EEEchhHHHHHHHHhh-----hceEEeecC-cc---cccccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccC
Q 006107 496 FVMHDLIHDFAELVSR-----ETILRLEES-TN---LSSRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRG 566 (661)
Q Consensus 496 ~~mH~lv~~~a~~~~~-----~~~~~~~~~-~~---~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~ 566 (661)
|.|||+|||+|..+++ +++.++..+ +. .....+..+|++++.++.... ...-..+++|+||++.+...
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch
Confidence 9999999999999999 666665543 10 112233578999998865432 23334566899999987531
Q ss_pred ---CCCCc-hh---hHhhHhhh-hcCCcccCcC--CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCcc
Q 006107 567 ---GPNTS-YL---RMEAWSGV-FGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVN 635 (661)
Q Consensus 567 ---~~~~~-~~---~~~~l~~~-~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~ 635 (661)
..+.. +. ..++|+.. +..+.+||++ +|.|||||+|++|.|+.||.++ +|+.|++||+..+..+..+|..
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch
Confidence 11111 11 23455543 4567789999 8999999999999999999999 9999999999987777777766
Q ss_pred ccccccccccccc
Q 006107 636 LNFTQFLQLSDFG 648 (661)
Q Consensus 636 i~~l~~L~~~~~~ 648 (661)
+..|++||.+.+.
T Consensus 638 ~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 638 LLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccEEEee
Confidence 6668888866553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7e-46 Score=439.80 Aligned_cols=442 Identities=17% Similarity=0.223 Sum_probs=323.4
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe---CCC-------
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV---SDN------- 244 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---~~~------- 244 (661)
...++|||+..++++..+|.... ..+++|+|+||||+||||||+.+|+.. .. +|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~--~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~-~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES--EEVRMVGIWGSSGIGKTTIARALFSRL--SR-QFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc--CceEEEEEEcCCCCchHHHHHHHHHHH--hh-cCCeEEEeeccccccchhhcccc
Confidence 34579999999999999885443 567899999999999999999999874 44 8888888742 111
Q ss_pred ----CC-HHHHHHHHHHHhccCCC-CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEE
Q 006107 245 ----FD-VFNILKALLESITSAAS-DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIIT 318 (661)
Q Consensus 245 ----~~-~~~~~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 318 (661)
++ ...+..+++..+..... ..... ..+++.+.++|+||||||||+. ..|+.+.......++|++||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 12344455555443221 11111 4567778999999999999976 5788877665556789999999
Q ss_pred eCChhhhcccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHH
Q 006107 319 TRHSDVASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWD 398 (661)
Q Consensus 319 Tr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~ 398 (661)
||+..++..++..++|+++.+++++||+||+++||+...+ ++.+.+++++|+++|+|+|||++++|+.|+.++..+|+
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 9999999877777899999999999999999999976533 35678899999999999999999999999999999999
Q ss_pred HHHccccccccCCCCchHHHHHhhcCCCH-HhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHHHHHH
Q 006107 399 DILDSKIWDLHQQSSILPVLRLSYHHLPS-HLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLGSKCF 477 (661)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l 477 (661)
.+++++.... +..+..+|++||+.|++ ..|.||+++|+|+.++.++ .+..|++.+.... +..+
T Consensus 409 ~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l 472 (1153)
T PLN03210 409 DMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGL 472 (1153)
T ss_pred HHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhCh
Confidence 9998865533 35799999999999986 5999999999999987554 4777888765432 1228
Q ss_pred HHHHhCCceeeccCCCCcEEEchhHHHHHHHHhhhce------EEeecCccc-----ccccCCcceEEEeeeCCCccc-c
Q 006107 478 HDLVSRSIFQQTSSGSSKFVMHDLIHDFAELVSRETI------LRLEESTNL-----SSRRFERVRHSSYGRGWLDGK-N 545 (661)
Q Consensus 478 ~~L~~rsll~~~~~~~~~~~mH~lv~~~a~~~~~~~~------~~~~~~~~~-----~~~~~~~~r~ls~~~~~~~~~-~ 545 (661)
+.|+++||++.... ++.|||++|++|+.++.++. .++....+. ......+++++++.....+.. .
T Consensus 473 ~~L~~ksLi~~~~~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 473 KNLVDKSLIHVRED---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred HHHHhcCCEEEcCC---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 99999999987542 69999999999999987653 111111100 112345677777654433221 1
Q ss_pred ccccccCCCCceEEeeccccC--------CCCCc--hhh--Hh----------------------hHhhhhcCCcccCcC
Q 006107 546 KFEVFYEIELLRTFLPFCIRG--------GPNTS--YLR--ME----------------------AWSGVFGNISAVDET 591 (661)
Q Consensus 546 ~~~~~~~~~~LrsL~~~~~~~--------~~~~~--~~~--~~----------------------~l~~~~~~l~~lP~~ 591 (661)
....|..|++|+.|.++.... ..+.. .+. .+ .|+.....++.+|..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 123466778888877653210 00100 000 01 111112334466666
Q ss_pred --CCCcceeecCCCCC-cccccccc-cccccceeecccccccccCCcccccccccccccccc
Q 006107 592 --LKKCLQFLRPKYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 592 --~L~~LryL~L~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~ 649 (661)
.|.+|++|+|+++. ++.+|. + .+.+||+|+|++|..+.++|.+|++|++|+.+++..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 88999999999876 888884 8 999999999999999999999999988888776653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-44 Score=365.58 Aligned_cols=275 Identities=36% Similarity=0.596 Sum_probs=223.9
Q ss_pred chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC
Q 006107 182 REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA 261 (661)
Q Consensus 182 R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 261 (661)
||.++++|.++|.... .+.++|+|+|+||+||||||..++++..++. +|+.++|++++...+...++..++.++...
T Consensus 1 re~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccccccccc
Confidence 7899999999998754 5678999999999999999999999877666 999999999999999999999999999877
Q ss_pred CC---CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcccCC-CceeecC
Q 006107 262 AS---DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVASTMGP-IEHYNLK 337 (661)
Q Consensus 262 ~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~~~-~~~~~l~ 337 (661)
.. ...+.+.....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 43 3467788999999999999999999999987 5888888887777789999999999988876654 5789999
Q ss_pred CCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC-CHHHHHHHHcccccccc----CCC
Q 006107 338 SLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT-RHAAWDDILDSKIWDLH----QQS 412 (661)
Q Consensus 338 ~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~-~~~~w~~~~~~~~~~~~----~~~ 412 (661)
+|+.+++++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+ +..+|..+++....... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999987655 22234446678999999999999999999999776 77889998876555443 235
Q ss_pred CchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCcccc
Q 006107 413 SILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQ 462 (661)
Q Consensus 413 ~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~ 462 (661)
.+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|++||||.+
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 78899999999999999999999999999999999999999999999986
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=2.1e-14 Score=170.16 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=184.9
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC-CCCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS-DNFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i 254 (661)
.+.++-|..-.+. |.. ....+++.|+|++|.||||++.++.+. ++.++|+++. .+.+...++..+
T Consensus 13 ~~~~~~R~rl~~~----l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLAK----LSG---ANNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHHH----Hhc---ccCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHHHH
Confidence 4567777754444 432 134578999999999999999998742 2268999996 455677777888
Q ss_pred HHHhccCCCC-------------CCCHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhHhhhhccccc-CCCCcEEEEE
Q 006107 255 LESITSAASD-------------LNTLNEVQVQLKKAVD--GKRFLLVLDDVRNEDYSLWVDLKAPFLA-AAPNSKMIIT 318 (661)
Q Consensus 255 l~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvT 318 (661)
+..+...... ..+.......+...+. +.+++|||||+++.+......+...+.. ..++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 8777532111 0122223333333332 6799999999998765554544444443 3456788899
Q ss_pred eCChhhhcc--c-CCCceeecC----CCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 006107 319 TRHSDVAST--M-GPIEHYNLK----SLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRT 391 (661)
Q Consensus 319 Tr~~~v~~~--~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~ 391 (661)
||...-... . ......++. +|+.+|+.++|....... ...+...+|++.|+|+|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 997422111 0 011234555 999999999997654211 12345678999999999999998877654
Q ss_pred CC--HHHHHHHHcccccccc--CCCCchHHHH-HhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCC
Q 006107 392 TR--HAAWDDILDSKIWDLH--QQSSILPVLR-LSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNS 466 (661)
Q Consensus 392 ~~--~~~w~~~~~~~~~~~~--~~~~i~~~l~-~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 466 (661)
.. ..... +... ....+...+. ..++.||++.+..+..+|+++. |+.+.+ . .+...
T Consensus 232 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~-~-----~l~~~---- 291 (903)
T PRK04841 232 NNSSLHDSA-------RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALI-V-----RVTGE---- 291 (903)
T ss_pred CCCchhhhh-------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHH-H-----HHcCC----
Confidence 41 11111 1111 1134555543 3489999999999999999973 343222 1 11111
Q ss_pred ccHHHHHHHHHHHHHhCCceee-ccCCCCcEEEchhHHHHHHHHh
Q 006107 467 EQMEDLGSKCFHDLVSRSIFQQ-TSSGSSKFVMHDLIHDFAELVS 510 (661)
Q Consensus 467 ~~~e~~~~~~l~~L~~rsll~~-~~~~~~~~~mH~lv~~~a~~~~ 510 (661)
+.+...+++|.+.+++.. .+.+...|+.|++++++++...
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 123566999999999753 3433457899999999998765
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=4.9e-12 Score=134.91 Aligned_cols=301 Identities=13% Similarity=0.096 Sum_probs=178.3
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.+..++||++++++|...+...-.+.....+.|+|++|+|||++++.++++..... ..-..+++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHHHH
Confidence 34679999999999999985532223345678999999999999999998754332 23456777777777888999999
Q ss_pred HHHhccCC-C-CCCCHHHHHHHHHhhcC--CceEEEEEeCCCCCC----hhhHhhhhcccccCCCCc--EEEEEeCChhh
Q 006107 255 LESITSAA-S-DLNTLNEVQVQLKKAVD--GKRFLLVLDDVRNED----YSLWVDLKAPFLAAAPNS--KMIITTRHSDV 324 (661)
Q Consensus 255 l~~l~~~~-~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs--~ilvTTr~~~v 324 (661)
+.++.... + ...+.+++...+.+.+. +++.+||||+++... ...+..+...+.. ..++ .+|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 99987522 1 22345666666766664 567899999998743 1223333332222 1233 35555554333
Q ss_pred hcccC-------CCceeecCCCChHhHHHHHHHhhcCC--CCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhc-----
Q 006107 325 ASTMG-------PIEHYNLKSLLDDDCWSIFIKHALEG--RDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLR----- 390 (661)
Q Consensus 325 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~----- 390 (661)
..... ....+.+.+++.++..+++..++... ........++.+++......|..+.|+.++-....
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22111 12467899999999999998876322 11112223333333333334556777766643221
Q ss_pred c--C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCC--CcccChhhHHHH--HHhCCccccC
Q 006107 391 T--T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPK--DYEFTEKGLIFL--WMAGGIIRQS 463 (661)
Q Consensus 391 ~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~--~~~i~~~~li~~--W~aeg~i~~~ 463 (661)
. . +.+.+..+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-..
T Consensus 266 ~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~- 335 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE- 335 (394)
T ss_pred CCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-
Confidence 1 1 555665555432 1223455688999998887766553321 123444444432 122111111
Q ss_pred CCCccHHHHHHHHHHHHHhCCceeecc
Q 006107 464 RNSEQMEDLGSKCFHDLVSRSIFQQTS 490 (661)
Q Consensus 464 ~~~~~~e~~~~~~l~~L~~rsll~~~~ 490 (661)
......-.+|++.|...|+|....
T Consensus 336 ---~~~~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 336 ---PRTHTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred ---cCcHHHHHHHHHHHHhcCCeEEEE
Confidence 101123456899999999997643
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.45 E-value=4.3e-12 Score=137.21 Aligned_cols=295 Identities=17% Similarity=0.201 Sum_probs=195.3
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i 254 (661)
....+-|.. |++.|.. ..+.+++.|..|+|.|||||+.+.+.... .-..+.|.+++. +.++..++..+
T Consensus 18 ~~~~v~R~r----L~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~----~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA----DGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccHH----HHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC----cccceeEeecCCccCCHHHHHHHH
Confidence 455677765 5555543 24578999999999999999999986322 335789999876 45788899999
Q ss_pred HHHhccCCCC-------------CCCHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhHhhhhc-ccccCCCCcEEEEE
Q 006107 255 LESITSAASD-------------LNTLNEVQVQLKKAVD--GKRFLLVLDDVRNEDYSLWVDLKA-PFLAAAPNSKMIIT 318 (661)
Q Consensus 255 l~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~-~l~~~~~gs~ilvT 318 (661)
+..+..-.+. ..+...+...+..-+. .++..+||||.+-........-.. .+....++-..+||
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 9888754332 1233334444444333 568999999987655444444333 33445678899999
Q ss_pred eCChhhhcccC---CCceeec----CCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 006107 319 TRHSDVASTMG---PIEHYNL----KSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRT 391 (661)
Q Consensus 319 Tr~~~v~~~~~---~~~~~~l----~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~ 391 (661)
||+..-..... ....+++ -.|+.+|+.++|...... +..+.-.+.+.+.++|.+-|+..++=.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99864332211 1123333 368999999999876411 122344689999999999999999988884
Q ss_pred C-CHHHHHHHHccccccccCCCCch-HHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccH
Q 006107 392 T-RHAAWDDILDSKIWDLHQQSSIL-PVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQM 469 (661)
Q Consensus 392 ~-~~~~w~~~~~~~~~~~~~~~~i~-~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~ 469 (661)
+ +.+.....+.-. ...+. ..+.--++.||+++|..++-||+++.= -..|+..- +-
T Consensus 240 ~~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg 296 (894)
T COG2909 240 NTSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TG 296 (894)
T ss_pred CCcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hc
Confidence 4 444333322210 01121 234556899999999999999999762 12333321 11
Q ss_pred HHHHHHHHHHHHhCCce-eeccCCCCcEEEchhHHHHHHHHhh
Q 006107 470 EDLGSKCFHDLVSRSIF-QQTSSGSSKFVMHDLIHDFAELVSR 511 (661)
Q Consensus 470 e~~~~~~l~~L~~rsll-~~~~~~~~~~~mH~lv~~~a~~~~~ 511 (661)
++.+...+++|.+++|+ ++-+.....|+.|.++.||.+.--.
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 24466679999999997 5555556789999999999986544
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.38 E-value=6.4e-11 Score=119.34 Aligned_cols=181 Identities=22% Similarity=0.227 Sum_probs=116.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh----h
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK----A 278 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~----~ 278 (661)
.++.|+|++|+|||||++.+++..... .+ ...|+ +....+..+++..+...++.+... .+.......+.. .
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE--RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC--Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 478999999999999999999875421 11 22333 334457788888898888654432 222223333322 2
Q ss_pred -cCCceEEEEEeCCCCCChhhHhhhhcccc---cCCCCcEEEEEeCChhhhcccC----------CCceeecCCCChHhH
Q 006107 279 -VDGKRFLLVLDDVRNEDYSLWVDLKAPFL---AAAPNSKMIITTRHSDVASTMG----------PIEHYNLKSLLDDDC 344 (661)
Q Consensus 279 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTTr~~~v~~~~~----------~~~~~~l~~L~~~e~ 344 (661)
..+++.+||+||++..+...++.+..... .......|++|.... ....+. ....+++.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 36788999999999987666666543221 112223455555432 221111 124578999999999
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 345 WSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 345 ~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
.+++...+...+.........+..+.|++.|+|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764322211122345778999999999999999998776
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=2.2e-10 Score=120.90 Aligned_cols=301 Identities=14% Similarity=0.104 Sum_probs=175.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCC---CEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKF---DVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~~ 253 (661)
..++||++++++|..+|.....+.....+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 479999999999999986522223345689999999999999999998643211011 24577888777778899999
Q ss_pred HHHHhcc---CCC-CCCCHHHHHHHHHhhc--CCceEEEEEeCCCCCC---hhhHhhhhccc-ccCC--CCcEEEEEeCC
Q 006107 254 LLESITS---AAS-DLNTLNEVQVQLKKAV--DGKRFLLVLDDVRNED---YSLWVDLKAPF-LAAA--PNSKMIITTRH 321 (661)
Q Consensus 254 il~~l~~---~~~-~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvTTr~ 321 (661)
++.++.. ..+ ...+..+....+.+.+ .+++++||||+++... ......+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 9998842 111 1223445555555555 3568899999998762 11122222221 1111 23344555543
Q ss_pred hhhhccc-----CC--CceeecCCCChHhHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHcCCChHHHHHHHHH-h---
Q 006107 322 SDVASTM-----GP--IEHYNLKSLLDDDCWSIFIKHALEG-RDLSAHQISESFRKKVVGKCRGLPLAAKTLEGL-L--- 389 (661)
Q Consensus 322 ~~v~~~~-----~~--~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~-l--- 389 (661)
......+ .. ...+.+.+.+.++..+++..++... ......+...+.+..++..+.|.|-.+..+... .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3221111 11 2468899999999999999886311 111122333344556777778998554333221 1
Q ss_pred -cc---C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCC--CCcccChhhHHHHHH--hCCcc
Q 006107 390 -RT---T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFP--KDYEFTEKGLIFLWM--AGGII 460 (661)
Q Consensus 390 -~~---~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~li~~W~--aeg~i 460 (661)
.. . +.+....+.+.. -.....-++..||.+.+..+..++..- .+..+....+...+- ++.+
T Consensus 255 ~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~- 324 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI- 324 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-
Confidence 11 1 445554444332 123345577899998887666655321 333456666665331 2211
Q ss_pred ccCCCCccHHHHHHHHHHHHHhCCceeecc
Q 006107 461 RQSRNSEQMEDLGSKCFHDLVSRSIFQQTS 490 (661)
Q Consensus 461 ~~~~~~~~~e~~~~~~l~~L~~rsll~~~~ 490 (661)
.. .........+++..|...|++....
T Consensus 325 ~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 325 GV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 10 1122355667899999999997654
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.26 E-value=9.6e-11 Score=121.11 Aligned_cols=266 Identities=17% Similarity=0.164 Sum_probs=145.4
Q ss_pred cCccccchhhHHHHHHHHhcCC-CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSS-DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
-.+|+|+++.++.+..++.... .+..+..+.|+|++|+|||+||+.+++.... .+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~---~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV---NI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC---Ce---EEEecc-cccChHHHHHH
Confidence 4679999999999988875421 1234557889999999999999999887432 11 112211 11111122222
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccc-------------------cCCCCcEE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFL-------------------AAAPNSKM 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~i 315 (661)
+..+. +.-+|++||++.......+.+...+. ...+.+-|
T Consensus 97 l~~l~----------------------~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 97 LTNLE----------------------EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHhcc----------------------cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 22221 22355555555432111111111000 00123445
Q ss_pred EEEeCChhhhccc--CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCC
Q 006107 316 IITTRHSDVASTM--GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTR 393 (661)
Q Consensus 316 lvTTr~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~ 393 (661)
..|++...+...+ .....+++.+++.++..+++.+.+...+. ....+....|++.|+|.|-.+..+...+.
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~--- 227 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR--- 227 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence 5566644332221 11246889999999999999988754322 12245678999999999976555554321
Q ss_pred HHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHH-HhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHH
Q 006107 394 HAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFA-FCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDL 472 (661)
Q Consensus 394 ~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 472 (661)
.|........-....-......+...+..|++..+..+. ....|+.+ .+..+.+.... . .+..+.
T Consensus 228 --~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~~~~~--- 293 (328)
T PRK00080 228 --DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EERDTI--- 293 (328)
T ss_pred --HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CCcchH---
Confidence 222211100000000012233456667888888888775 77777766 35555543322 2 112333
Q ss_pred HHHHHH-HHHhCCceeeccCC
Q 006107 473 GSKCFH-DLVSRSIFQQTSSG 492 (661)
Q Consensus 473 ~~~~l~-~L~~rsll~~~~~~ 492 (661)
++.++ .|++.+|++....+
T Consensus 294 -~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 294 -EDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred -HHHhhHHHHHcCCcccCCch
Confidence 34466 89999999866554
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.25 E-value=3.4e-11 Score=118.55 Aligned_cols=195 Identities=17% Similarity=0.270 Sum_probs=101.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH----
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL---- 254 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i---- 254 (661)
|+||++|+++|.+++.... ...+.|+|+.|+|||+|++.+.+...... + ..+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~----~~~~~l~G~rg~GKTsLl~~~~~~~~~~~--~-~~~y~~~~~~~~-~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP----SQHILLYGPRGSGKTSLLKEFINELKEKG--Y-KVVYIDFLEESN-ESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHHCT--E--E-CCCHHCCTTBSH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc----CcEEEEEcCCcCCHHHHHHHHHHHhhhcC--C-cEEEEecccchh-hhHHHHHHHHH
Confidence 7999999999999886532 34788999999999999999988753211 1 334444433332 2222222
Q ss_pred ------HHHhccCCC----------CCCCHHHHHHHHHhhc--CCceEEEEEeCCCCCC------hhhHhhhhccccc--
Q 006107 255 ------LESITSAAS----------DLNTLNEVQVQLKKAV--DGKRFLLVLDDVRNED------YSLWVDLKAPFLA-- 308 (661)
Q Consensus 255 ------l~~l~~~~~----------~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~-- 308 (661)
...+..... ...........+.+.+ .+++++||+||++... ......+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 111211110 0011112222222222 2445999999997654 1112222222222
Q ss_pred CCCCcEEEEEeCChhhhcc--------cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 309 AAPNSKMIITTRHSDVAST--------MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 309 ~~~gs~ilvTTr~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
......+++++........ .+....+.+++|+.+++++++....-.. ... +...+..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 2334455555555444332 2333559999999999999999875333 111 1234456899999999999
Q ss_pred HHHH
Q 006107 381 AAKT 384 (661)
Q Consensus 381 ai~~ 384 (661)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.24 E-value=3.6e-10 Score=115.99 Aligned_cols=277 Identities=17% Similarity=0.132 Sum_probs=143.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-CCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSD-HANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.+|+|++..+++|..++..... ...+..+.++|++|+|||+||+.+++.... .+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV---NL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CE---EEeccchhcCch-hHHHHH
Confidence 4689999999999998864211 233456789999999999999999886431 11 112211111111 122222
Q ss_pred HHhccCCC-CCCCH----HHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhccc--
Q 006107 256 ESITSAAS-DLNTL----NEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVASTM-- 328 (661)
Q Consensus 256 ~~l~~~~~-~~~~~----~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~-- 328 (661)
..+....- -.++. ......+...+.+.+..+|+++..+.. .| ... ..+.+-|..||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eec---CCCeEEEEecCCccccCHHHHh
Confidence 22211100 00000 111222333333344444444433221 00 011 11244555666654332221
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHccccccc
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDILDSKIWDL 408 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~~~~~~~~ 408 (661)
.....+.+++++.++..+++.+.+..... ....+....|++.|+|.|-.+..++..+ |...........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~i 217 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKII 217 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCc
Confidence 11245789999999999999988753322 1224566889999999997665555432 111100000000
Q ss_pred cC--CCCchHHHHHhhcCCCHHhhHHHH-HhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHHHHHHH-HHHhCC
Q 006107 409 HQ--QSSILPVLRLSYHHLPSHLKRCFA-FCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLGSKCFH-DLVSRS 484 (661)
Q Consensus 409 ~~--~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~rs 484 (661)
.. -......+...|..++++.+..+. .++.++.+ .+....+.... .. + ...++..++ .|++++
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~--~----~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE--D----ADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC--C----cchHHHhhhHHHHHcC
Confidence 00 011222255668889888887776 55667644 34443333221 11 1 133555578 699999
Q ss_pred ceeeccCC
Q 006107 485 IFQQTSSG 492 (661)
Q Consensus 485 ll~~~~~~ 492 (661)
|++....+
T Consensus 285 li~~~~~g 292 (305)
T TIGR00635 285 FLQRTPRG 292 (305)
T ss_pred CcccCCch
Confidence 99755544
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.13 E-value=1.8e-09 Score=123.79 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=181.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC---HHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD---VFNILKAL 254 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~---~~~~~~~i 254 (661)
.++||+.|++.|...+..... +.-.++.+.|.+|||||+|+++|.....-..+.|-...+-....+.. ..+.++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~-g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK-GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC-CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 378999999999999977543 34459999999999999999999776432211111111111112211 22334444
Q ss_pred HHHhccCCC--------------------------------C-------CCC--HHH-----HHHHHHhhc-CCceEEEE
Q 006107 255 LESITSAAS--------------------------------D-------LNT--LNE-----VQVQLKKAV-DGKRFLLV 287 (661)
Q Consensus 255 l~~l~~~~~--------------------------------~-------~~~--~~~-----l~~~l~~~l-~~kr~LlV 287 (661)
+.++..... + ..+ ... ....+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 443311100 0 000 000 111222222 45699999
Q ss_pred EeCCCCCChhhHhhhhcccccCCC----CcEEEE--EeCCh--hhhcccCCCceeecCCCChHhHHHHHHHhhcCCCCCC
Q 006107 288 LDDVRNEDYSLWVDLKAPFLAAAP----NSKMII--TTRHS--DVASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLS 359 (661)
Q Consensus 288 lDdv~~~~~~~~~~l~~~l~~~~~----gs~ilv--TTr~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~ 359 (661)
+||++|.|.....-+...+..... ...|.. |.+.. .+.........+.|.||+..+...+..........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 999999987665554433332210 112222 22221 22222234478999999999999999887643222
Q ss_pred cchhhHHHHHHHHHHcCCChHHHHHHHHHhccC-----C--HHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHH
Q 006107 360 AHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT-----R--HAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRC 432 (661)
Q Consensus 360 ~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~-----~--~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~c 432 (661)
...+....|++++.|+|+.+..+-..+... + ...|..=..+. ........+...+..-.+.||...|..
T Consensus 238 ---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 238 ---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred ---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhhHHHHHHHHHHHhcCCHHHHHH
Confidence 223567899999999999999998888764 2 22232211110 011111224446888999999999999
Q ss_pred HHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHHHHHHHHHHhCCceeecc-----CCC--C-cEEEchhHHH
Q 006107 433 FAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTS-----SGS--S-KFVMHDLIHD 504 (661)
Q Consensus 433 fl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~-----~~~--~-~~~mH~lv~~ 504 (661)
+...|++... |+.+.|...|- +.....+...++.|....++-..+ ... . +-..|++|++
T Consensus 314 l~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 314 LKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 9999999766 45666666552 133455666666666555543221 111 1 2257888888
Q ss_pred HHHHH
Q 006107 505 FAELV 509 (661)
Q Consensus 505 ~a~~~ 509 (661)
.|-..
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 77643
No 13
>PF05729 NACHT: NACHT domain
Probab=99.07 E-value=8.3e-10 Score=102.34 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=90.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCC----CCEEEEEEeCCCCCHH---HHHHHHHHHhccCCCCCCCHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSK----FDVKAWVCVSDNFDVF---NILKALLESITSAASDLNTLNEVQVQL 275 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~il~~l~~~~~~~~~~~~l~~~l 275 (661)
+++.|+|.+|+||||+++.++....... . +...+|++........ .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE-PPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC-cccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH
Confidence 4789999999999999999987754332 2 3466677765543322 23333333322211 1111111111
Q ss_pred HhhcCCceEEEEEeCCCCCChh-------hHhhhhcccccC--CCCcEEEEEeCChhh---hcccCCCceeecCCCChHh
Q 006107 276 KKAVDGKRFLLVLDDVRNEDYS-------LWVDLKAPFLAA--APNSKMIITTRHSDV---ASTMGPIEHYNLKSLLDDD 343 (661)
Q Consensus 276 ~~~l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~--~~gs~ilvTTr~~~v---~~~~~~~~~~~l~~L~~~e 343 (661)
.-..++++||||++++.... .+..+...+... .++.+++||+|.... .........+.+.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 12578999999999875421 133333333333 578999999998655 3334444679999999999
Q ss_pred HHHHHHHhh
Q 006107 344 CWSIFIKHA 352 (661)
Q Consensus 344 ~~~Lf~~~~ 352 (661)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=4.8e-08 Score=107.19 Aligned_cols=299 Identities=13% Similarity=0.094 Sum_probs=161.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-CCCeEEEEEeccCCChHHHHHHHHhcccccc--cCCC--CEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSD-HANFVVIPIVGMGGIGKTTLAREVYNDKAVA--DSKF--DVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~v~~~~~~~~~~ 251 (661)
..+.||++|+++|...|...-. .....++.|+|++|.|||+.++.|.+..... .... -.+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4688999999999999865221 2223578899999999999999998764211 1011 245677777767888889
Q ss_pred HHHHHHhccCCC-CCCCHHHHHHHHHhhcC---CceEEEEEeCCCCCChhhHhhhhcccc-cCCCCcEEEE--EeCCh--
Q 006107 252 KALLESITSAAS-DLNTLNEVQVQLKKAVD---GKRFLLVLDDVRNEDYSLWVDLKAPFL-AAAPNSKMII--TTRHS-- 322 (661)
Q Consensus 252 ~~il~~l~~~~~-~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TTr~~-- 322 (661)
..|..++....+ ...........+...+. +...+||||+++......-+.+...+. ....+++|+| +|...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 999988854332 12223334444444432 234689999998653211111221111 1224555544 33221
Q ss_pred ------hhhcccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC----
Q 006107 323 ------DVASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT---- 392 (661)
Q Consensus 323 ------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~---- 392 (661)
.+...++ ...+...|.+.++..+++..++-.......+..++-+|+.++...|-.-.||.++-.+....
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegsk 993 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQK 993 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCc
Confidence 1111122 13466799999999999999875432222334444455545444455555666555444321
Q ss_pred -CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCC---CcccChhhHHHHH--HhC--C-ccccC
Q 006107 393 -RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPK---DYEFTEKGLIFLW--MAG--G-IIRQS 463 (661)
Q Consensus 393 -~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~---~~~i~~~~li~~W--~ae--g-~i~~~ 463 (661)
..+....+.... ....+.-....||.+.|-.+..+...-+ ...++..++.... +++ | .+..
T Consensus 994 VT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv- 1063 (1164)
T PTZ00112 994 IVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM- 1063 (1164)
T ss_pred cCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC-
Confidence 333333332211 1112344557899888765554433211 2234444443332 222 1 1111
Q ss_pred CCCccHHHHHHHHHHHHHhCCceeec
Q 006107 464 RNSEQMEDLGSKCFHDLVSRSIFQQT 489 (661)
Q Consensus 464 ~~~~~~e~~~~~~l~~L~~rsll~~~ 489 (661)
....+ ...+|+.+|...|+|-..
T Consensus 1064 --~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1064 --CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred --CCcHH-HHHHHHHHHHhcCeEEec
Confidence 11112 455677777777777543
No 15
>PRK04195 replication factor C large subunit; Provisional
Probab=98.86 E-value=3.1e-07 Score=99.92 Aligned_cols=247 Identities=13% Similarity=0.140 Sum_probs=143.3
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
-.+++|.++.++++.+|+..-..+...+.+.|+|++|+||||+|+.+++... |+. +-++.+...+. ..+..++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----~~~-ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----WEV-IELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCE-EEEcccccccH-HHHHHHH
Confidence 3569999999999999986532223367899999999999999999988632 322 33344432222 2233333
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh----hhHhhhhcccccCCCCcEEEEEeCChh-hhc-cc-
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY----SLWVDLKAPFLAAAPNSKMIITTRHSD-VAS-TM- 328 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~~-~~- 328 (661)
....... .....++-+||||+++.... ..+..+...+.. .+..+|+|+.... ... .+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113677999999987532 234555544432 3445666664321 111 11
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC----CHHHHHHHHccc
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT----RHAAWDDILDSK 404 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~----~~~~w~~~~~~~ 404 (661)
.....+.+.+++.++....+.+.+...+... ..++...|++.++|..-.+......+... +.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i----~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC----DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 2235688999999999988887764433221 23567899999999887665544444332 3444443332
Q ss_pred cccccCCCCchHHHHHhhc-CCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCcccc
Q 006107 405 IWDLHQQSSILPVLRLSYH-HLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQ 462 (661)
Q Consensus 405 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~ 462 (661)
.....+++.++..-+. .-+......+..+. ++. ..+..|+.|.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1122566777776665 32333333322221 222 35778999999764
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=4.4e-08 Score=95.55 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=95.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
+.+.|+|++|+|||+|++.+++....+ ...+.|+++... ...... +.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 468899999999999999999874322 234566665321 000001 111111 2
Q ss_pred eEEEEEeCCCCCC-hhhHhh-hhcccccC-CCCcEEEE-EeCC---------hhhhcccCCCceeecCCCChHhHHHHHH
Q 006107 283 RFLLVLDDVRNED-YSLWVD-LKAPFLAA-APNSKMII-TTRH---------SDVASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 283 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TTr~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
.-+|||||+|... ...|.. +...+... ..|..+|| |+.. +.+.+.+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998742 245553 33323221 23556655 4443 2344444555688999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
+.+...+- ...+++..-|++.+.|..-.+..+-..+
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88864332 1224667889999998877766555443
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=9e-08 Score=102.08 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=106.7
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAK---ILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++|++..+.. +..++... ....+.|+|++|+||||||+.+++... . . |+.++......+-++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~----~~~~ilL~GppGtGKTtLA~~ia~~~~--~-~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG----RLSSMILWGPPGTGKTTLARIIAGATD--A-P-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC----CCceEEEECCCCCCHHHHHHHHHHHhC--C-C-----EEEEecccccHHHHHH
Confidence 468888877655 77776442 344678899999999999999987632 1 2 2222221111111222
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE--EeCChhhh---ccc
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII--TTRHSDVA---STM 328 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTr~~~v~---~~~ 328 (661)
++..... ....+++.+|+||+++.......+.+...+. .+..++| ||.+.... ...
T Consensus 80 ii~~~~~----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 80 VIEEARQ----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHHHHHH----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 2221110 1114578899999999877656666655443 2445554 34432211 111
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHH
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGL 388 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 388 (661)
.....+.+.+++.++...++.+.+....... .....+....|++.|+|.|..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2236789999999999999988653211100 1223456788999999999876555443
No 18
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.77 E-value=1.2e-08 Score=96.56 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccc
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVA 229 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 229 (661)
.|+||+++++++...|. .......+.+.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999996 3334556899999999999999999998876544
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=6.8e-07 Score=97.98 Aligned_cols=196 Identities=17% Similarity=0.184 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.. .++ +..+........|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g---RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~-~~~-------~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG---RLHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVT-------SQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCcc-CCC-------CCCCcccHHHHHHhc
Confidence 57899999999999998653 2245667999999999999998876432110 000 001111111111111
Q ss_pred Hh-----ccCCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh-hc
Q 006107 257 SI-----TSAASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV-AS 326 (661)
Q Consensus 257 ~l-----~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v-~~ 326 (661)
.- ..........++....+... ..++.-++|||+++..+...|+.++..+-......++|+||.+..- ..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 00 00000111122222222211 2345568999999999888888888877665567888877776432 22
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLEG 387 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~ 387 (661)
. ......+.+++++.++..+.+.+.+...+.. ...+..+.|++.++|..- ++.++-.
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1223679999999999999998876433211 124566889999998764 5555433
No 20
>PTZ00202 tuzin; Provisional
Probab=98.75 E-value=1.7e-06 Score=88.49 Aligned_cols=169 Identities=12% Similarity=0.221 Sum_probs=104.8
Q ss_pred CCCCCCcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHH
Q 006107 170 SSSVPTEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFN 249 (661)
Q Consensus 170 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 249 (661)
...|++.+.|+||+.+..+|...|...+ ...++++.|+|++|+|||||++.+.... ++ ..++++.. +..+
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d-~~~privvLtG~~G~GKTTLlR~~~~~l-----~~-~qL~vNpr---g~eE 324 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLD-TAHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM-PAVFVDVR---GTED 324 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccC-CCCceEEEEECCCCCCHHHHHHHHHhcC-----Cc-eEEEECCC---CHHH
Confidence 3455667889999999999999986533 2345699999999999999999998652 21 23334333 6799
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhc-----C-CceEEEEEeCCCCCC-hhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 250 ILKALLESITSAASDLNTLNEVQVQLKKAV-----D-GKRFLLVLDDVRNED-YSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 250 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
++..++.+++.+.. ....++...|.+.+ . +++.+||+-==+-.+ ...+++.. .+.....-|.|++---.+
T Consensus 325 lLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHh
Confidence 99999999996332 22233333333322 3 667777764222111 11222221 233334556777654433
Q ss_pred hhhcc---cCCCceeecCCCChHhHHHHHHHh
Q 006107 323 DVAST---MGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 323 ~v~~~---~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
..... ......|.+.+|+.++|.++..+.
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32211 122366889999999998877654
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.74 E-value=2.1e-08 Score=88.93 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=82.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc--CCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD--SKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
.+++.|+|++|+|||++++.+.+...... ..-..++|+++....+...+...++..+........+...+...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 35899999999999999999988743110 0134677999988889999999999999987666556677777777777
Q ss_pred CCc-eEEEEEeCCCCC-ChhhHhhhhcccccCCCCcEEEEEeCC
Q 006107 280 DGK-RFLLVLDDVRNE-DYSLWVDLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 280 ~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTr~ 321 (661)
... ..+||+||++.. +...++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 544 459999999876 5455555544333 567778777664
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.5e-07 Score=94.51 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=96.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
.+.-..+|||+|+||||||+.+..... . .| ..++...+-.+-++.+++... +....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~--~-~f-----~~~sAv~~gvkdlr~i~e~a~----------------~~~~~ 102 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTN--A-AF-----EALSAVTSGVKDLREIIEEAR----------------KNRLL 102 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhC--C-ce-----EEeccccccHHHHHHHHHHHH----------------HHHhc
Confidence 455667899999999999999987532 1 33 333333322222333332211 22234
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE--EeCChhhhc---ccCCCceeecCCCChHhHHHHHHHhhcCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII--TTRHSDVAS---TMGPIEHYNLKSLLDDDCWSIFIKHALEG 355 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTr~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 355 (661)
+++.+|++|.|+..+..+-+.++ +.-..|.-|+| ||.++...- ......++.+++|+.++..+++.+-+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 89999999999987655444443 33456777776 666653321 22344789999999999999998843221
Q ss_pred -CCCC--cchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 356 -RDLS--AHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 356 -~~~~--~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
.... .....+++...|+..++|---++-..
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 1111 11123456678899999886544333
No 23
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=6.7e-07 Score=91.87 Aligned_cols=180 Identities=16% Similarity=0.229 Sum_probs=118.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc---ccccCCCCEEEEEEe-CCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK---AVADSKFDVKAWVCV-SDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~~f~~~~wv~v-~~~~~~~~~~~ 252 (661)
.+++|-+..++.+.+++... .-.+.+.++|+.|+||||+|+.++... ...+.|+|...|... +......+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~---~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN---RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC---CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HH
Confidence 35789888889999988543 334578899999999999999887642 111226676666542 22222222 22
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhh-cc-cCC
Q 006107 253 ALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVA-ST-MGP 330 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~-~~-~~~ 330 (661)
++.+.+... -..+++-++|+|+++..+...++.++..+.....++.+|++|.+.... .. ...
T Consensus 80 ~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 80 NIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 333322211 112456688888888888788999999988777888988888654322 11 122
Q ss_pred CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 331 IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 331 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
...+++.++++++....+.+... . . ..+.++.++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-~--~-----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-D--I-----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-C--C-----CHHHHHHHHHHcCCCHHHHHH
Confidence 36789999999999888765531 1 1 123356888999999876543
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=8.9e-07 Score=92.38 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCH-HHHHH--
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDV-FNILK-- 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~~-- 252 (661)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+...-. .+. ..+.++++...+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP----NLPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhcchhhhhcC
Confidence 56899999999999888543 23457899999999999999988764311 222 2344444321100 00000
Q ss_pred -HHHHHhccC-CCCCCCHHHHHHHHHh---hc--CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-h
Q 006107 253 -ALLESITSA-ASDLNTLNEVQVQLKK---AV--DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-V 324 (661)
Q Consensus 253 -~il~~l~~~-~~~~~~~~~l~~~l~~---~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v 324 (661)
.....+... .......+.....+.. .. .+.+-+||+||++.........+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 0000111212221211 11 23445899999987765455556555544445677887775432 2
Q ss_pred hccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 325 ASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
...+ .....+.+.+++.++...++.+.+...+.. ...+....+++.++|.+-.+....
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1111 223568889999999999988875433221 224567889999999876654433
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.1e-06 Score=91.86 Aligned_cols=194 Identities=15% Similarity=0.190 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.+.+.+... .-...+.++|++|+||||+|+.+.+...-.. .+. ..++.......++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~---~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~-------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG---RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GIT-------SNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcC---CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCCCHHHHHHhc
Confidence 56899999999998888653 2345778999999999999999976532110 000 000000001111111
Q ss_pred Hhcc-----CCCCCCCHHHHHHHHHh---h-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhc
Q 006107 257 SITS-----AASDLNTLNEVQVQLKK---A-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVAS 326 (661)
Q Consensus 257 ~l~~-----~~~~~~~~~~l~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~ 326 (661)
.... ........++....+.. . ..+++-++|+|+++......++.++..+.......++|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 0000 00000112221111111 0 12455699999999887667888877776655667777766543 3322
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
. .+....+++.+++.++..+.+...+...+. ...++.+..|++.++|.|..+...
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 222367999999999999888876543221 122356678999999988654433
No 26
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.7e-06 Score=87.10 Aligned_cols=248 Identities=16% Similarity=0.161 Sum_probs=147.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.+.+|+.+++++...|...-.+..+.-+.|+|++|+|||+.++.+.+.........+ .++|++....+..+++..|++.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 389999999999998876333333444889999999999999999988654431222 7899999999999999999999
Q ss_pred hccCCCCCCCHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhHhhhhcccccC-CCCcEEE--EEeCChhhhc------
Q 006107 258 ITSAASDLNTLNEVQVQLKKAVD--GKRFLLVLDDVRNEDYSLWVDLKAPFLAA-APNSKMI--ITTRHSDVAS------ 326 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~il--vTTr~~~v~~------ 326 (661)
++..........+....+.+.+. ++.+++|||+++......-+.+...+... ...++|+ ..+-+..+..
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 98555444555666666766664 68899999999765322111222222111 1134433 3333332222
Q ss_pred --ccCCCceeecCCCChHhHHHHHHHhhcCCCC-CCcchhhHHHHHHHHHHcCC-ChHHHHHHHHH--hccC------CH
Q 006107 327 --TMGPIEHYNLKSLLDDDCWSIFIKHALEGRD-LSAHQISESFRKKVVGKCRG-LPLAAKTLEGL--LRTT------RH 394 (661)
Q Consensus 327 --~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~~--l~~~------~~ 394 (661)
.++.. .+...|-+.+|-.+++..++-..-. ....+..-+++..++..-+| --.|+..+-.. ++.. +.
T Consensus 177 ~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~ 255 (366)
T COG1474 177 KSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSE 255 (366)
T ss_pred hhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCH
Confidence 22332 3778899999999999888743211 11222333334444444444 33444433222 2111 22
Q ss_pred HHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHh
Q 006107 395 AAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFC 436 (661)
Q Consensus 395 ~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~ 436 (661)
+.-..+... .-...+.-....||.+.|-.+...
T Consensus 256 ~~v~~a~~~---------~~~~~~~~~~~~L~~~~ki~L~~i 288 (366)
T COG1474 256 DHVREAQEE---------IERDVLEEVLKTLPLHQKIVLLAI 288 (366)
T ss_pred HHHHHHHHH---------hhHHHHHHHHHcCCHhHHHHHHHH
Confidence 222222111 112234555788888877664443
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=2.4e-06 Score=92.56 Aligned_cols=199 Identities=16% Similarity=0.139 Sum_probs=114.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.++||-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.. . +..--+. +..+........|..
T Consensus 16 ddVIGQe~vv~~L~~al~~g---RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~-p-~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ---RLHHAYLFTGTRGVGKTTLSRILAKSLNCTG-A-DGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC---CCceEEEEECCCCCCHHHHHHHHHHHhcCCC-c-cccccCC-CCCCcccHHHHHHHc
Confidence 56899999999999988653 2345678999999999999998866432100 0 0000000 000111111111111
Q ss_pred Hh-----ccCCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhc
Q 006107 257 SI-----TSAASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAS 326 (661)
Q Consensus 257 ~l-----~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~ 326 (661)
.- ..........++....+... ..++.-++|||+++..+...++.++..+-....++++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 00000112233332222221 2356679999999999888888888877655556666655554 44432
Q ss_pred cc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 327 TM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 327 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
.+ ..-..+.+.+++.++..+.+.+.+...+.. ...+..+.|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 222678999999999999888765332211 11345578999999999755444
No 28
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.61 E-value=4e-07 Score=89.10 Aligned_cols=171 Identities=14% Similarity=0.128 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC
Q 006107 182 REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA 261 (661)
Q Consensus 182 R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 261 (661)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++.... .....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG----KGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD------- 81 (226)
T ss_pred cHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH-------
Confidence 34466677766532 23457889999999999999999876432 223445665433211 00
Q ss_pred CCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChh-hHh-hhhccccc-CCCCcEEEEEeCChhh---------hcccC
Q 006107 262 ASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYS-LWV-DLKAPFLA-AAPNSKMIITTRHSDV---------ASTMG 329 (661)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~ilvTTr~~~v---------~~~~~ 329 (661)
. .+...+.+ .-+|||||++..... .|. .+...+.. ...+..+|+||+.... ...+.
T Consensus 82 -------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0 01111222 238999999876432 232 33333322 1234578888875321 11222
Q ss_pred CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHH
Q 006107 330 PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGL 388 (661)
Q Consensus 330 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 388 (661)
....+++.+++.++...++...+-... . ....+..+.|.+.++|+|..+.-+...
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRG-L---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 235789999999999999887653221 1 122455678888899999877766543
No 29
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=1.3e-07 Score=83.39 Aligned_cols=119 Identities=20% Similarity=0.256 Sum_probs=79.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
+++.|.|+.|+|||||+++++.+.. ....+++++..+......... + ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 5899999999999999999987633 124567776655322110000 0 122233333347
Q ss_pred eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcc------cCCCceeecCCCChHhH
Q 006107 283 RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAST------MGPIEHYNLKSLLDDDC 344 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~------~~~~~~~~l~~L~~~e~ 344 (661)
+.+|+||++... ..|......+....+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999887 4788877777776667899999997655532 12235688999987763
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.7e-07 Score=101.25 Aligned_cols=196 Identities=17% Similarity=0.159 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|-+..++.|..++... .-...+.++|++|+||||+|+.+++...-.+ .+...+|.|.+.. .+......-+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~---~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG---RLGHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhH-HHhcCCCCceE
Confidence 46899998888888888653 2345678999999999999999877643211 1222222221110 00000000000
Q ss_pred HhccCCCCCCCHHH---HHHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc-CC
Q 006107 257 SITSAASDLNTLNE---VQVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM-GP 330 (661)
Q Consensus 257 ~l~~~~~~~~~~~~---l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~-~~ 330 (661)
.+.. ......+. +...+.. -..+++-++|||+++......++.++..+......+.+|++|.. ..+...+ ..
T Consensus 89 el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000 00111222 2111111 12355668999999988777788888877665556666655543 3332222 22
Q ss_pred CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 331 IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 331 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
...+++.+++.++....+.+.+...+.. ...+....|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 3679999999999999998876443321 124567889999999986543
No 31
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1.1e-07 Score=96.02 Aligned_cols=291 Identities=19% Similarity=0.203 Sum_probs=183.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..+.+.++|+|||||||++-.+.. . .. -|. .+.++....--+...+.-.+...++-.... -+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~--~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A--AS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H--hh-hcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence 346899999999999999998877 2 22 455 455555554445555555555445543321 122333455666
Q ss_pred CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcccCCCceeecCCCChH-hHHHHHHHhhcCCCCC
Q 006107 280 DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVASTMGPIEHYNLKSLLDD-DCWSIFIKHALEGRDL 358 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~~~ 358 (661)
.++|.++|+||....- ..-..+.-.+..+.+.-.++.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999986542 22333444455556667888888854322 23345667777655 7888887765332211
Q ss_pred -CcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHcccccccc--------CCCCchHHHHHhhcCCCHHh
Q 006107 359 -SAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDILDSKIWDLH--------QQSSILPVLRLSYHHLPSHL 429 (661)
Q Consensus 359 -~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~ 429 (661)
.-..........|.++.+|.|++|...++..+.-.+.+....++.....+. ........+.+||.-|....
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 111223456789999999999999999999888755555444443222221 12466788999999999999
Q ss_pred hHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHHHHHHHHHHhCCceeeccCC-CCcEEEchhHHHHHHH
Q 006107 430 KRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSSG-SSKFVMHDLIHDFAEL 508 (661)
Q Consensus 430 k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~-~~~~~mH~lv~~~a~~ 508 (661)
+-.|..++.|...|... ...|.+-|-.. ....-....-+..|++.+++...... ...|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999887554 34454444221 11122334447788899987654433 3356666667777665
Q ss_pred Hhh
Q 006107 509 VSR 511 (661)
Q Consensus 509 ~~~ 511 (661)
+..
T Consensus 313 eL~ 315 (414)
T COG3903 313 ELH 315 (414)
T ss_pred HHH
Confidence 544
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.56 E-value=1.7e-06 Score=81.25 Aligned_cols=182 Identities=20% Similarity=0.244 Sum_probs=97.8
Q ss_pred cCccccchhhHHHHHHHHhcC-CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTS-SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
-.+|||-+.-++.+.-++... ..+..+.-+.+|||+|+||||||..+.+.... .| .+.+... .
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~---~~~sg~~---i------- 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV---NF---KITSGPA---I------- 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC-----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC---Ce---Eeccchh---h-------
Confidence 367999998888766555431 12345667889999999999999999987442 22 1222111 0
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccc--------cCCCCc-----------EE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFL--------AAAPNS-----------KM 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~gs-----------~i 315 (661)
....++...+.. + +++.+|++|+++..+...-+.+...+- ..++++ -|
T Consensus 87 -----------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 87 -----------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred -----------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111122222222 2 245588889999876544333333321 112222 23
Q ss_pred EEEeCChhhhcccCC-C-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhc
Q 006107 316 IITTRHSDVASTMGP-I-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLR 390 (661)
Q Consensus 316 lvTTr~~~v~~~~~~-~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~ 390 (661)
=.|||...+...+.. . -..+++..+.+|-.++..+.+..-+ -+...+.+.+|+++|.|-|--+.-+-..++
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 357776544433322 2 3357999999999999987763322 233457789999999999987666555444
No 33
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.55 E-value=6e-06 Score=85.42 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe--CCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV--SDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i 254 (661)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+.+..... .+.. .++.+ +...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~--~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK----NMPHLLFAGPPGTGKTTAALALARELYGE--DWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHcCC--cccc-ceEEeccccccchH-HHHHH
Confidence 46899999999999988543 23357899999999999999998764221 1211 12222 2211111 11111
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-hhc-ccCCCc
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-VAS-TMGPIE 332 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~~-~~~~~~ 332 (661)
+..+....+ .....+-++++|+++.........+...+......+.+|+++.... ... ......
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111110000 0012356899999987765555566655554445677777764321 111 111234
Q ss_pred eeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 333 HYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 333 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
.+++.+++.++....+...+...+.. ...+....+++.++|.+.-+...
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 68899999999988888776433221 22456788899999998764433
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2e-06 Score=96.22 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc------------------CCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD------------------SKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~w 238 (661)
.+++|-+..++.|.+++... .-...+.++|++|+||||+|+.+++...-.. +.|...++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 56899999999999888653 2345668999999999999999987632110 00111111
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHH-hhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLK-KAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
++......+ +.+.++...+. ....+++-++|||+++......++.++..+-......++|+
T Consensus 93 idAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 93 VDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred eccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 111100111 11111211111 11246777999999999988888888887765555666666
Q ss_pred EeCC-hhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 318 TTRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 318 TTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
+|.+ ..+... ......+++.+++.++....+.+.+-..+. ....+....|++.++|.|--+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 333322 222367999999999999998876533221 122456688999999998654444
No 35
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.4e-06 Score=87.57 Aligned_cols=196 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC-CCCE----EEEEEeCCCCCHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS-KFDV----KAWVCVSDNFDVFNI 250 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~----~~wv~v~~~~~~~~~ 250 (661)
..+++|.+..++.|.+.+... .-...+.++|+.|+||+|+|..+.+..--... .... ..=+.+.... ..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~---rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG---RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 457899999999999888653 23457889999999999999877554311000 0000 0000000111 11
Q ss_pred HHHHHHHhccC---------C-----CCCCCHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhHhhhhcccccCCC
Q 006107 251 LKALLESITSA---------A-----SDLNTLNEVQVQLKKAV-----DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAP 311 (661)
Q Consensus 251 ~~~il~~l~~~---------~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 311 (661)
.+.+...-... . ...-.+++. +.+.+.+ .+.+.++|+||++..+....+.++..+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 12221111100 0 011123332 2333332 25667999999999988888888887766555
Q ss_pred CcEEEEEeCChh-hhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 312 NSKMIITTRHSD-VASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 312 gs~ilvTTr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
++.+|++|.+.. +...+ .....+.+.+++.++..+++.+.... .. .+....++..++|.|+.+..+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 677777776643 32222 23367999999999999999875311 01 1122678999999998665543
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.4e-06 Score=92.76 Aligned_cols=194 Identities=15% Similarity=0.156 Sum_probs=115.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|.+++... .-...+.++|++|+||||+|+.+.+...-. -++.. ..+......+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~g---rl~HAyLF~GPpGvGKTTlAriLAK~LnC~-------~~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG---RLHHAYLFTGTRGVGKTTIARILAKCLNCE-------TGVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-------cCCCC-CCCccCHHHHHHhc
Confidence 57899999999999998653 234678899999999999999887653210 01100 00111111111111
Q ss_pred Hhcc-----CCCCCCCHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-hh-
Q 006107 257 SITS-----AASDLNTLNEVQVQLKK----AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-VA- 325 (661)
Q Consensus 257 ~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~- 325 (661)
.-.. ........++....+.. -..++.-++|+|+++..+....+.++..+-....+.++|++|.+.. +.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 00001122222222211 1235667899999999887777888777765556677887776532 21
Q ss_pred cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 326 STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 326 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
........+++.+++.++....+.+.+...+.. ...+....|++.++|.+..+..+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 112333679999999999999888776433221 22345678999999988554433
No 37
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.50 E-value=9.8e-07 Score=79.59 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
+|++..+..+...+... ..+.+.|+|++|+|||++++.+++.... .-..+++++.............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~----~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP----PPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 47888888888887543 2347889999999999999999987531 12345666655433322211111000
Q ss_pred cCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhh---cccccC---CCCcEEEEEeCCh
Q 006107 260 SAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLK---APFLAA---APNSKMIITTRHS 322 (661)
Q Consensus 260 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~---~~gs~ilvTTr~~ 322 (661)
............++.+||+||++.........+. ..+... ..+..+|+||...
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111112223456789999999865222222222 222221 3577888888754
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=98.50 E-value=2.8e-06 Score=87.47 Aligned_cols=184 Identities=11% Similarity=0.157 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il 255 (661)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++...-. .|. ..+-++.+..... +..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~----~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG----NMPNLILSGPPGTGKTTSILALAHELLGP--NYKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC----CCceEEEECCCCCCHHHHHHHHHHHHhcc--cCccceeeecccccccH-HHHHHHH
Confidence 56889988888888776542 23346789999999999999998763211 222 1122222222221 1222222
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-CCCce
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM-GPIEH 333 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~-~~~~~ 333 (661)
..+...... .-.++.-+++||+++.........+...+-.....+++++++... .+...+ .....
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 221110000 002456799999999887666566655554434566777766542 221111 12256
Q ss_pred eecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 334 YNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 334 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
+++.+++.++....+...+-..+... ..+....|++.++|..-.+..
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i----~~~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPY----VPEGLEAIIFTADGDMRQALN 199 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 88999999999998887764332211 134568899999998754443
No 39
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=6.6e-06 Score=84.98 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=118.0
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCCCCHHHHHHH
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
....++|.++..+.+...+... ..+..+.|+|+.|+||||+|..+.+..--.. ..+... .....+......+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g---rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG---KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC---CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 4467899999999999988653 3345788999999999999998876532100 001111 00111111122333
Q ss_pred HHHHhc-------cC--C-----CCCCCHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcE
Q 006107 254 LLESIT-------SA--A-----SDLNTLNEVQVQLKKAV-----DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSK 314 (661)
Q Consensus 254 il~~l~-------~~--~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 314 (661)
+...-. .+ . ...-..++.. .+.+.+ .+++-++|+|+++..+....+.++..+-....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 322211 00 0 0111233332 333333 35667999999999988778888777765444555
Q ss_pred EEEEe-CChhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 315 MIITT-RHSDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 315 ilvTT-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
+|++| +...+...+ .....+++.+++.++..+++.+...... ...+....|++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55444 433332222 2236799999999999999987431111 113446789999999998665543
No 40
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=6e-06 Score=88.96 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCE-EEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDV-KAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~il 255 (661)
.+++|-+.-+..|...+... .-.+.+.++|++|+||||+|+.+++...-.. .... ..+..+ ........+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~---ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C----~~C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND---RLAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTC----EQCTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCC----CCChHHHHHh
Confidence 46899999888888877543 2345788999999999999999977532110 0000 000000 0001111111
Q ss_pred HHhcc-----CCCCCCCHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE-EeCChhhh
Q 006107 256 ESITS-----AASDLNTLNEVQVQLKK----AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII-TTRHSDVA 325 (661)
Q Consensus 256 ~~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTr~~~v~ 325 (661)
..... ........+++...+.. -..+++-++|+|+++......|+.++..+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 10000 00011122222222221 1245677899999999887788888887776555666655 44444443
Q ss_pred ccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 326 STM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
..+ .....+++.+++.++....+.+.+...+.. ...+....|++.++|.+.-+.
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 322 233568999999999999998887543321 123456789999999885443
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.2e-06 Score=90.05 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=113.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc------------------CCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD------------------SKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~w 238 (661)
.+++|-+..++.|...+... .-...+.++|++|+||||+|+.+++...-.. +.|...++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~---rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ---KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 46899999999999888653 2345678999999999999999876421100 01112222
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
++......+.+ ...+...+.. -..+++-++|+|+++..+...++.++..+-.....+.+|+
T Consensus 93 idaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 93 IDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred eecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 22211111111 1112222211 1235667999999998887778888887766555666665
Q ss_pred Ee-CChhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHH
Q 006107 318 TT-RHSDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLE 386 (661)
Q Consensus 318 TT-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 386 (661)
+| ....+... ......+++.+++.++....+.+.+...+. ....+....|++.++|.+- |+..+-
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 43333322 223367999999999988888775533221 1224456789999999775 444443
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.45 E-value=9.1e-06 Score=85.44 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-------------------CCCCEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-------------------SKFDVKA 237 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~ 237 (661)
.+++|.+..++.+.+++... .-...+.++|++|+||||+|+.+.....-.. .+++. +
T Consensus 14 ~~iig~~~~~~~l~~~~~~~---~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG---RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 46899999999999988643 2345788999999999999988865432100 01222 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 238 WVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 238 wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
+++-....... ..+++...+.. .-..+++-++|+|+++.......+.+...+......+.+|+
T Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVD-DIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 22221111111 11122221110 01224556899999987766667777777655455667666
Q ss_pred EeCChh-hhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 318 TTRHSD-VAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 318 TTr~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
+|.+.. +... ......+++.++++++...++...+...+.. ...+.+..|++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK----IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCChHHHHHHH
Confidence 665443 2222 1223568889999999998888776433211 124567889999999997665543
No 43
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.44 E-value=3.8e-06 Score=82.88 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=99.4
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
..+-+.+||++|+||||||+.+.+..+.. ...||..|....-..-.+.++++... ...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~-----SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKH-----SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCC-----ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 45567799999999999999999874422 24567776654444444444443221 12345
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE--EeCChhhhc---ccCCCceeecCCCChHhHHHHHHHhhc--
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII--TTRHSDVAS---TMGPIEHYNLKSLLDDDCWSIFIKHAL-- 353 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTr~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~-- 353 (661)
++|.+|++|.|+..+..+-+ ..++.-.+|.-++| ||.++...- .+..-.++.|++|+.++...++.+-.-
T Consensus 221 krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 78999999999876533322 23445567877776 777654422 223346799999999999888877332
Q ss_pred CC-CC---C-Ccc--hhhHHHHHHHHHHcCCChHH
Q 006107 354 EG-RD---L-SAH--QISESFRKKVVGKCRGLPLA 381 (661)
Q Consensus 354 ~~-~~---~-~~~--~~~~~~~~~I~~~~~G~PLa 381 (661)
++ .. . +.+ .....+.+-++..|+|-.-+
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 11 11 1 111 13345667788888887643
No 44
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=6.8e-06 Score=86.06 Aligned_cols=191 Identities=13% Similarity=0.151 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSD------HANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 250 (661)
.+++|-+.-++.|.+++..... ..-.+.+.++|++|+|||++|+.+.+..--.. .- + ..+..-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~-~~----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD-PD----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC-CC----C----CCCCCCHH
Confidence 3588999999999998876421 11346788999999999999998865321000 00 0 00000011
Q ss_pred HHHHHHHhccC------CCCCCCHHHHH---HHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC
Q 006107 251 LKALLESITSA------ASDLNTLNEVQ---VQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR 320 (661)
Q Consensus 251 ~~~il~~l~~~------~~~~~~~~~l~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr 320 (661)
.+.+...-.+. .......++.. ..+.. -..+++-++|+|+++..+....+.++..+-...++..+|++|.
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 11111000000 00011122221 11111 1134556888899999887777777777765556676666666
Q ss_pred Ch-hhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 321 HS-DVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 321 ~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
+. .+...+ .....+.+.+++.++..+.+.+.. + . ..+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 53 333222 233679999999999988887432 0 1 1244678899999999765444
No 45
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=6.1e-06 Score=80.71 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=90.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|+|++|+|||+|++.+++.... ....+.|+++.+ ....+. .....+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~~~------~~~~~~--------------~~~~~l-----~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPLQA------AAGRLR--------------DALEAL-----EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeHHH------hhhhHH--------------HHHHHH-----hc
Confidence 35899999999999999999886432 223455665422 111111 111111 12
Q ss_pred eEEEEEeCCCCCC-hhhHhhhhccccc--CCCCcEEEEEeCCh---------hhhcccCCCceeecCCCChHhHHHHHHH
Q 006107 283 RFLLVLDDVRNED-YSLWVDLKAPFLA--AAPNSKMIITTRHS---------DVASTMGPIEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 283 r~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 350 (661)
.-+|||||++... ...|....-.+.+ ...|..+|+|++.. .+.+.+.....+++++++.++..+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999998642 1234332222222 13466799999852 1112223345789999999999999998
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 351 HALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
++...+- ...++....|++.++|-.-.+..+
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHHHHH
Confidence 7644221 222456678888888776655433
No 46
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.41 E-value=1.1e-05 Score=76.43 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDL 358 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 358 (661)
+.+-++|+||++......++.++..+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 556789999999887777788887776655667777777643 222211 22367999999999999888876 1 1
Q ss_pred CcchhhHHHHHHHHHHcCCChHH
Q 006107 359 SAHQISESFRKKVVGKCRGLPLA 381 (661)
Q Consensus 359 ~~~~~~~~~~~~I~~~~~G~PLa 381 (661)
..+.+..|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 135678999999999853
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.3e-06 Score=90.08 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC-CCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS-KFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.++||-+.-++.|.+++... .-...+.++|+.|+||||+|+.+.+..--... .....- ...+......+.|.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~---rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~ 88 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ---RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDID 88 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHH
Confidence 56899888888888888653 23457789999999999999998543210000 000000 00111111222221
Q ss_pred HHhcc-----CCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhh
Q 006107 256 ESITS-----AASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVA 325 (661)
Q Consensus 256 ~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~ 325 (661)
..-.. ........++....+... ..++.-++|||+++..+...++.++..+-.....+++|++|.+ ..+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 10000 000111222222222111 1245568999999999888888888877665556666655543 3332
Q ss_pred c-ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 326 S-TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 326 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
. .......+++++++.++....+.+.+...+.. ...+....|++.++|.+.-+..+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22334679999999999999888776433221 12355688999999988655444
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.6e-06 Score=91.17 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=115.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.++||-+.-++.|.+.+.... -...+.++|+.|+||||+|+.+.+..--.. .+ ....+......+.|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r---l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~-------~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR---LHHAYLFSGTRGVGKTTIARLLAKGLNCET-GI-------TATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CC-------CCCCCCCCHHHHHHHc
Confidence 568999999999988886532 234578999999999999999876532110 00 0011111122222211
Q ss_pred Hhcc-----CCCCCCCHHHHH---HHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhc
Q 006107 257 SITS-----AASDLNTLNEVQ---VQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAS 326 (661)
Q Consensus 257 ~l~~-----~~~~~~~~~~l~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~ 326 (661)
.-.. ........++.. ..+.. -..+++-++|||+++.......+.++..+-......++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 1000 000011222222 22111 12466779999999999888888888877665556666655554 33332
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
. ......+++.+++.++....+.+.+-..+. ....+....|++.++|.+--+..+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 222367999999999999988876532221 1123456789999999887554443
No 49
>PRK05642 DNA replication initiation factor; Validated
Probab=98.41 E-value=5.4e-06 Score=81.11 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=93.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|+|++|+|||+|++.+++.... .-..++|++..+ +... ... +.+.+.+-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 56889999999999999999876432 223456666432 2111 011 22222222
Q ss_pred eEEEEEeCCCCCC-hhhHhh-hhccccc-CCCCcEEEEEeCChhh-hc--------ccCCCceeecCCCChHhHHHHHHH
Q 006107 283 RFLLVLDDVRNED-YSLWVD-LKAPFLA-AAPNSKMIITTRHSDV-AS--------TMGPIEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 283 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTTr~~~v-~~--------~~~~~~~~~l~~L~~~e~~~Lf~~ 350 (661)
. +||+||+.... ...|.. +...+.. ...|..+|+|++.... .. .+.....+++++++.++-.+++.+
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 78899997532 234443 3333322 2346788888875321 11 122335688999999999999986
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 351 HALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
++.... . ...+++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-L---HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654322 1 1224677889999998877666555444
No 50
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=3.5e-06 Score=93.84 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=117.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCC---CEEEEEEeCCC---CCHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKF---DVKAWVCVSDN---FDVFNI 250 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~ 250 (661)
++++|++..+..+.+.+... ....+.|+|++|+||||||+.+++...... .+ ...-|+.+... .+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP----FPQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC----CCCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHHHH
Confidence 46899999999888877432 234689999999999999999987653222 22 12335544321 122222
Q ss_pred HHHH---------------HHHhccCC----------------CCCCC-HHHHHHHHHhhcCCceEEEEEeCCCCCChhh
Q 006107 251 LKAL---------------LESITSAA----------------SDLNT-LNEVQVQLKKAVDGKRFLLVLDDVRNEDYSL 298 (661)
Q Consensus 251 ~~~i---------------l~~l~~~~----------------~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~ 298 (661)
...+ +...+... ++... ....+..+.+.+.++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111000 00111 1234667777788888888877777766666
Q ss_pred HhhhhcccccCCCCcEEEE--EeCChhh-hccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHH
Q 006107 299 WVDLKAPFLAAAPNSKMII--TTRHSDV-ASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGK 374 (661)
Q Consensus 299 ~~~l~~~l~~~~~gs~ilv--TTr~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~ 374 (661)
|..+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+-.... . ...++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHC
Confidence 7777666665555555555 5554321 1111 12246788999999999999987643211 1 113455666666
Q ss_pred cCCChHHHHHHHHH
Q 006107 375 CRGLPLAAKTLEGL 388 (661)
Q Consensus 375 ~~G~PLai~~~~~~ 388 (661)
+..-+-++..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65556677666544
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=6.6e-06 Score=90.29 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-.. ... + ..+........+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~---rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-~~~---~----~pCg~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG---RLHHAYLLTGTRGVGKTTIARILAKSLNCEN-AQH---G----EPCGVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCcHHHHHHHHHHHhcccC-CCC---C----CCCcccHHHHHHhc
Confidence 57899999999999998653 2345788999999999999998876421110 000 0 00000000011100
Q ss_pred H-----hccCCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhc
Q 006107 257 S-----ITSAASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVAS 326 (661)
Q Consensus 257 ~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~ 326 (661)
. +..........+.+...+... ..+++-++|||+++..+....+.++..+-.....+++|++|.+. .+..
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 000000111222222222111 12556789999999887666777777775544566777766543 2221
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
. .+....+.+.+++.++....+.+.+-..+.. ...+....|++.++|.+.-+..+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 1222457888999999999998776433321 224566899999999986544443
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1e-05 Score=86.40 Aligned_cols=184 Identities=19% Similarity=0.195 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc------------------cccCCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA------------------VADSKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------------~~~~~f~~~~w 238 (661)
.+++|-+..++.|.+.+... .-...+.++|+.|+||||+|+.+....- +..+.+..++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~---ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN---KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 56899998888888877543 2234788999999999999998865310 00001112233
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIIT 318 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 318 (661)
++.+....+.+ .+.+++.... .-..++.-++|+|+++.......+.++..+-...+.+.+|++
T Consensus 90 idaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 33322222222 1122221110 012345668999999988777788888877665567777766
Q ss_pred eCC-hhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 319 TRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 319 Tr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
|.. ..+... ......+++.+++.++....+.+.+...+.. ...+....|++.++|.+..+..
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 543 333322 2333678999999999999998876443321 2245567899999998864433
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.1e-05 Score=77.43 Aligned_cols=268 Identities=17% Similarity=0.167 Sum_probs=142.5
Q ss_pred cCccccchhhHHHHHHHHhcC-CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTS-SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
-.+|+|-++-++++.=++... ..+..+--+.++||+|.||||||.-+.+...+.- -++-...
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~-------k~tsGp~---------- 87 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL-------KITSGPA---------- 87 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe-------Eeccccc----------
Confidence 467999998888887777552 2345566899999999999999999998754321 1111110
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhccc--------ccCCCCcE-----------E
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPF--------LAAAPNSK-----------M 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l--------~~~~~gs~-----------i 315 (661)
.....++...+.. | ...=+|++|.++......-+-+-..+ ...++++| |
T Consensus 88 ----------leK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 88 ----------LEKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ----------ccChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 1111122222222 2 22336777888775532211111111 12233443 3
Q ss_pred EEEeCChhhhcccC--CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCC
Q 006107 316 IITTRHSDVASTMG--PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTR 393 (661)
Q Consensus 316 lvTTr~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~ 393 (661)
=-|||.-.+...+. -.-+.+++--+.+|-.++..+.+..-.. ...++.+.+|+++..|-|--..-+.+..+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRVR--- 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRVR--- 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHHH---
Confidence 34888644433222 1245778889999999999887732221 22345678999999999986655555443
Q ss_pred HHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHH
Q 006107 394 HAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLG 473 (661)
Q Consensus 394 ~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~ 473 (661)
++..+.....-.....+.....|..-=..|+.-.++.+..+.-...+-.+-.+.+.. +-| .+..+.|++-
T Consensus 229 --Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~---~lg-----e~~~TiEdv~ 298 (332)
T COG2255 229 --DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAA---ALG-----EDRDTIEDVI 298 (332)
T ss_pred --HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHH---Hhc-----CchhHHHHHH
Confidence 233222211000000011222233333344444444444433332222233333321 111 2346777776
Q ss_pred HHHHHHHHhCCceeeccCC
Q 006107 474 SKCFHDLVSRSIFQQTSSG 492 (661)
Q Consensus 474 ~~~l~~L~~rsll~~~~~~ 492 (661)
|-| |++.||+|....+
T Consensus 299 EPy---Liq~gfi~RTpRG 314 (332)
T COG2255 299 EPY---LIQQGFIQRTPRG 314 (332)
T ss_pred hHH---HHHhchhhhCCCc
Confidence 665 7889999988876
No 54
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=8.9e-06 Score=88.34 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|++..++.+.+++... .-.+.+.++|++|+||||+|+.+.+...- .-|.... .+......+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~---rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-------~~~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN---KLTHAYIFSGPRGIGKTSIAKIFAKAINC-------LNPKDGD-CCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHHhcC-------CCCCCCC-CCcccHHHHHHHc
Confidence 56899999999999988553 22357889999999999999998765321 1111110 1111122222211
Q ss_pred HhccC-----CCCCCCHHHHH---HHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC-Chhhhc
Q 006107 257 SITSA-----ASDLNTLNEVQ---VQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR-HSDVAS 326 (661)
Q Consensus 257 ~l~~~-----~~~~~~~~~l~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr-~~~v~~ 326 (661)
..... .......++.. ..+... ..+++-++|+|+++......++.++..+-.....+.+|++|. ...+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 11000 00011122221 111111 123344699999998877777888777665445566655553 333322
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLEG 387 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~ 387 (661)
. ......+++.+++.++....+...+...+.. ...+.+..+++.++|.+. |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~----Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIK----IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 2234678999999999998888766332211 113456789999999775 4444443
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.5e-05 Score=85.48 Aligned_cols=201 Identities=16% Similarity=0.157 Sum_probs=115.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC-C-----------------CCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS-K-----------------FDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~w 238 (661)
.+++|.+.....|...+... .-+..+.++|++|+||||+|+.+.+...-... . +...+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~---~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN---SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 56899988888888777543 23356789999999999999999765321100 0 001111
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
++.+.......+ +.+. ..+.. ...+++-++|+|+++.......+.++..+........+|+
T Consensus 91 l~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 91 LDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 221111111111 1111 11110 1235667999999987765556667666654444455554
Q ss_pred EeCC-hhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHHHHHhcc---
Q 006107 318 TTRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTLEGLLRT--- 391 (661)
Q Consensus 318 TTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~~~l~~--- 391 (661)
+|.+ ..+... ......+++.+++.++....+.+.+...+.. ...+....|++.++|. +.++..+-.+...
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~----i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~ 228 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE----IDREALSFIAKRASGGLRDALTMLEQVWKFSEG 228 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 4443 333222 2233678999999999988888876433221 2245567888877655 6677666554332
Q ss_pred C-CHHHHHHHHc
Q 006107 392 T-RHAAWDDILD 402 (661)
Q Consensus 392 ~-~~~~w~~~~~ 402 (661)
. +.+....++.
T Consensus 229 ~It~e~V~~~l~ 240 (472)
T PRK14962 229 KITLETVHEALG 240 (472)
T ss_pred CCCHHHHHHHHc
Confidence 2 6666666554
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.5e-06 Score=87.53 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|-+..+..|..++.... -...+.++|++|+||||+|+.+.+...-. .... ...+....+ ...+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r---i~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK---IGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTS----CLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcH----HHHHHc
Confidence 568999999999888886532 23467899999999999999997753211 1000 000111111 111111
Q ss_pred HhccCC--------CCCCCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC-Chhhhc
Q 006107 257 SITSAA--------SDLNTLNEVQVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR-HSDVAS 326 (661)
Q Consensus 257 ~l~~~~--------~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr-~~~v~~ 326 (661)
...... ...++..++...+.. ...++.-++|+|+++......++.++..+-.......+|++|. ...+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 111000 001111222222221 1245667999999999988888888877755444555554444 333332
Q ss_pred cc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 327 TM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 327 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
.+ .....+.+.+++.++..+.+.+.+...+. ....+....|++.++|.+.-+..+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHHHH
Confidence 22 22356999999999998888877643321 122456789999999998644333
No 57
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=3.7e-06 Score=82.32 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=93.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
+.+.|+|++|+|||+|++.+++.... ....+.++++..... ...+....+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 47889999999999999999886432 223456666542100 00111111111
Q ss_pred eEEEEEeCCCCCC-hhhHhhhh-cccccC-CCC-cEEEEEeCChh---------hhcccCCCceeecCCCChHhHHHHHH
Q 006107 283 RFLLVLDDVRNED-YSLWVDLK-APFLAA-APN-SKMIITTRHSD---------VASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 283 r~LlVlDdv~~~~-~~~~~~l~-~~l~~~-~~g-s~ilvTTr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
--+|+|||++... ...|+... ..+... ..| .++|+||+... ..+.+....++++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 1389999997643 13444322 222211 133 47889888542 22233445689999999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
+.+...+ . ...+++..-|++.+.|..-.+..+-..+
T Consensus 178 ~~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 7664322 1 2235677889999998877665554433
No 58
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=6.3e-06 Score=80.59 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=89.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|++|+|||+||+.+++..... .. ...+++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~-~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG--GR-NARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CC-cEEEEehHHhH------HH----H------------------hhc-c
Confidence 3468899999999999999998864221 12 33445433211 00 0 011 1
Q ss_pred ceEEEEEeCCCCCChhhHhhhhcccccC-CCCc-EEEEEeCChhhhc--------ccCCCceeecCCCChHhHHHHHHHh
Q 006107 282 KRFLLVLDDVRNEDYSLWVDLKAPFLAA-APNS-KMIITTRHSDVAS--------TMGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 282 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTTr~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
..-+||+||++..+...-..+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347999999876433333343433221 2344 4666666432211 1222357899999998877777654
Q ss_pred hcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 352 ALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
+-..+ . ...+++.+.+++.+.|++..+..+...+
T Consensus 170 ~~~~~-v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-L---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 1 2224567888889999999887776654
No 59
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=1.2e-05 Score=79.25 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=120.3
Q ss_pred hHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC---CCCEEEEEEeCCCCCHHHHHHHHHHHhccC
Q 006107 185 DKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS---KFDVKAWVCVSDNFDVFNILKALLESITSA 261 (661)
Q Consensus 185 e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 261 (661)
-++++.+++..+. ....+-+.|+|.+|+|||++++.+.+....... .--.++.|.....++...+...|+.+++.+
T Consensus 45 ~L~~L~~Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 45 ALDRLEELLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 4455666665543 345567899999999999999999876432210 112567788888999999999999999988
Q ss_pred CCCCCCHHHHHHHHHhhcCC-ceEEEEEeCCCCCC------hhhHhhhhcccccCCCCcEEEEEeCChhhhcc-----cC
Q 006107 262 ASDLNTLNEVQVQLKKAVDG-KRFLLVLDDVRNED------YSLWVDLKAPFLAAAPNSKMIITTRHSDVAST-----MG 329 (661)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~-----~~ 329 (661)
.........+.......++. +--+||+|++++.- +...-..+..+.+.-.=+-|.+-|+.-.-+-. .+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 76666666655555455532 33489999998731 11222222333333333455565553211110 12
Q ss_pred CCceeecCCCChHh-HHHHHHHhh--cCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 330 PIEHYNLKSLLDDD-CWSIFIKHA--LEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 330 ~~~~~~l~~L~~~e-~~~Lf~~~~--~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
....+.|.+...++ ...|+.... +.-..+. .-...++++.|+..++|+.--+..+-
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 23566777776554 444443322 1111211 12346788999999999976555443
No 60
>PF14516 AAA_35: AAA-like domain
Probab=98.37 E-value=0.00017 Score=74.40 Aligned_cols=201 Identities=11% Similarity=0.098 Sum_probs=119.7
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-----CCHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-----FDVFNI 250 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~ 250 (661)
.+..|+|...-+++.+.|...+ ..+.|.|+-.+|||+|...+.+..... .+ .++++++..- .+...+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-----~~~~I~apRq~GKTSll~~l~~~l~~~--~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-----SYIRIKAPRQMGKTSLLLRLLERLQQQ--GY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-----CEEEEECcccCCHHHHHHHHHHHHHHC--CC-EEEEEEeecCCCcccCCHHHH
Confidence 3456789866667777775532 378999999999999999998775532 23 5567876542 245666
Q ss_pred HHHHHHHhccCCCC-----------CCCHHHHHHHHHhhc---CCceEEEEEeCCCCCCh-----hhHhhhhccc-ccCC
Q 006107 251 LKALLESITSAASD-----------LNTLNEVQVQLKKAV---DGKRFLLVLDDVRNEDY-----SLWVDLKAPF-LAAA 310 (661)
Q Consensus 251 ~~~il~~l~~~~~~-----------~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~l~~~l-~~~~ 310 (661)
++.+...+...-.- ..........+.+.+ .+++.+|+||+++..-. .++-.+.+.+ ....
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 66666555433211 112222333344432 26899999999986421 1122222222 1111
Q ss_pred ---C-C-cEEE-EEeCChhhhcc-----cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 ---P-N-SKMI-ITTRHSDVAST-----MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ---~-g-s~il-vTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
. . -+++ +.+........ ......++|.+|+.+|...|..++-.. .. ....++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCH
Confidence 1 1 1222 22211111111 112256899999999999999876421 11 122789999999999
Q ss_pred HHHHHHHHHhccC
Q 006107 380 LAAKTLEGLLRTT 392 (661)
Q Consensus 380 Lai~~~~~~l~~~ 392 (661)
.-+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999765
No 61
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.35 E-value=6.7e-06 Score=79.43 Aligned_cols=187 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred cccchhh-HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 179 VFGREED-KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 179 ~vGR~~e-~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
++|-..+ .-.....+.... +.....+.|+|+.|+|||.|.+.+++...... .-..+++++ ..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~-~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP-GERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST-TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC-CCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHHH
Confidence 4564332 233344443432 23344578999999999999999998754322 122455553 45666666666
Q ss_pred hccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-hhHhhhhccccc--CCCCcEEEEEeCChh---------hh
Q 006107 258 ITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-SLWVDLKAPFLA--AAPNSKMIITTRHSD---------VA 325 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~ilvTTr~~~---------v~ 325 (661)
+.. ...++.. +.+. .-=+|+|||++.... ..|......+.+ ...|.++|+|+.... ..
T Consensus 83 ~~~-----~~~~~~~----~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 83 LRD-----GEIEEFK----DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHT-----TSHHHHH----HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHc-----ccchhhh----hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 553 2223222 3333 234889999987542 223332222221 135778999996531 12
Q ss_pred cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 326 STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 326 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
+.+...-.+++++++.++...++.+.+...+-. .-++++.-|++.+.+..-.+.-+-.
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 223344679999999999999999887443321 2356777888888877666654443
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.6e-06 Score=88.01 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc------------------CCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD------------------SKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~w 238 (661)
.++||-+.-++.|.+++.... -...+.++|++|+||||+|+.+.+..--.. +.|...+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~---l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY---LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC---CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 568999999999999996532 334678999999999999998876431110 01111222
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIIT 318 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 318 (661)
++.+....+.++ +++++.+.. .-..++.-++|+|+++.......+.++..+-.....+++|++
T Consensus 93 idaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 222211122111 122221110 112355668999999998877888888877665566777766
Q ss_pred eCCh-hhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 319 TRHS-DVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 319 Tr~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
|.+. .+... ......+++.+++.++....+.+.+-..+.. ...+....|++.++|.+.-+..+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~----~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE----FENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 5442 32221 1223568899999998887776665332211 12345678999999988655443
No 63
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.35 E-value=4.1e-08 Score=102.56 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=87.8
Q ss_pred cccccCCCCceEEeeccccCCC---CCc---hhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcccccccc-cccc
Q 006107 547 FEVFYEIELLRTFLPFCIRGGP---NTS---YLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQN 617 (661)
Q Consensus 547 ~~~~~~~~~LrsL~~~~~~~~~---~~~---~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~ 617 (661)
++.++.|..|.+|.+.+...+. |.+ ....+-++....++..+|+. +|.+||-|+||++.|++|--.+ ...|
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN 269 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh
Confidence 4455666677777666544321 211 11223445456677788888 9999999999999999999999 9999
Q ss_pred cceeecccccccccCCcccccccccc----------ccccccccccccccccc
Q 006107 618 WNMAIWCKHTYLVTGSVNLNFTQFLQ----------LSDFGTHIGARKSKEIY 660 (661)
Q Consensus 618 Lq~L~l~~c~~l~~LP~~i~~l~~L~----------~~~~~~~~~~~~~~e~~ 660 (661)
|+||+++. +.|..||..+.+|.+|+ +.+++.+||.+..+|+|
T Consensus 270 lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 270 LETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 99999998 78999999999887775 57789999999999987
No 64
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.6e-06 Score=87.19 Aligned_cols=200 Identities=13% Similarity=0.168 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE-eCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC-VSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~il 255 (661)
.+++|.+.-++.|..++... .-...+.++|++|+||||+|..+.+...-.. .+....|.. ....+..-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~---~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhC---CcceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHHHh
Confidence 56899998888888888643 2334688999999999999998876532111 111111110 001111111112221
Q ss_pred HHhccC-----CCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhhh
Q 006107 256 ESITSA-----ASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDVA 325 (661)
Q Consensus 256 ~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v~ 325 (661)
...... .......+++....... ..+.+-++|+|+++......++.+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 111000 00111123332221111 23456688999999887677888887776655666766555 333333
Q ss_pred ccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 326 STM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
..+ .....+++.++++++....+...+-..+. ....+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 221 11256889999999998888876532221 12245678999999998864444
No 65
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=1.9e-05 Score=84.67 Aligned_cols=169 Identities=13% Similarity=0.083 Sum_probs=102.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|+.|+|||+|++.+.+...... .-..+++++ ..++...+...+.... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 34688999999999999999988543221 122344443 3466677666654311 11222333333
Q ss_pred ceEEEEEeCCCCCCh-hhH-hhhhccccc-CCCCcEEEEEeCCh---------hhhcccCCCceeecCCCChHhHHHHHH
Q 006107 282 KRFLLVLDDVRNEDY-SLW-VDLKAPFLA-AAPNSKMIITTRHS---------DVASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 282 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
..-+|||||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++..+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 234889999976531 122 223332221 13455788887643 112223344568899999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
+.+-..+.. ....+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 887432210 123356788999999999987766653
No 66
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=9.6e-07 Score=86.38 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=62.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCCHH------HHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN--FDVFNILKALLESITSAASDLNTLN------EVQVQ 274 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~l~~~ 274 (661)
..++|+|++|+|||||++.++++.... +|+..+|+.+.+. +++.++++.+...+-....+..... .....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999986533 7999999997776 7899999998444333222222211 11122
Q ss_pred HHhh-cCCceEEEEEeCCCCC
Q 006107 275 LKKA-VDGKRFLLVLDDVRNE 294 (661)
Q Consensus 275 l~~~-l~~kr~LlVlDdv~~~ 294 (661)
.... -.+++.++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 2221 2589999999999653
No 67
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=8.8e-06 Score=78.91 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=87.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
+.+.|+|++|+|||+|++.+++...+ .+++.. .+...++..+ .+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHhh---------------------hc-
Confidence 46899999999999999998865221 133221 1111111111 11
Q ss_pred eEEEEEeCCCCC--ChhhHhhhhcccccCCCCcEEEEEeCCh---------hhhcccCCCceeecCCCChHhHHHHHHHh
Q 006107 283 RFLLVLDDVRNE--DYSLWVDLKAPFLAAAPNSKMIITTRHS---------DVASTMGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 283 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
-+|++||++.. ++..+..+...+. ..|..+|+|++.. ...+.+.....+++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999753 2233333333322 3467788888742 22333445578999999999999999988
Q ss_pred hcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 352 ALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
+-... . ...+++..-|++.+.|..-++..+..
T Consensus 166 ~~~~~-~---~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQ-L---YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcC-C---CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 74321 1 22356778888988888877765433
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=8.5e-06 Score=91.66 Aligned_cols=174 Identities=20% Similarity=0.220 Sum_probs=98.1
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKA---KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+|+|.+..+. .+.+.+.. .....+.|+|++|+||||||+.+++... . .|. .++... ....+ .+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~----~~~~slLL~GPpGtGKTTLA~aIA~~~~--~-~f~---~lna~~-~~i~d-ir- 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA----DRVGSLILYGPPGVGKTTLARIIANHTR--A-HFS---SLNAVL-AGVKD-LR- 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHhc--C-cce---eehhhh-hhhHH-HH-
Confidence 56899888774 45555543 2344678999999999999999987632 2 331 111110 00000 01
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhc--CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEE--eCChh--hhc-
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAV--DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIIT--TRHSD--VAS- 326 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--Tr~~~--v~~- 326 (661)
.......+.+ .+++.+|||||++......++.+...+. .|+.++|+ |.+.. +..
T Consensus 95 ----------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 95 ----------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ----------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1111111111 2467799999998876666666654432 35555553 33321 111
Q ss_pred ccCCCceeecCCCChHhHHHHHHHhhcCCC---CCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 327 TMGPIEHYNLKSLLDDDCWSIFIKHALEGR---DLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 327 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
.......+.+.+++.++...++.+.+-... .........+....|++.+.|..-.+
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 112235789999999999999987653100 00011223456678888888875433
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.28 E-value=1.1e-05 Score=84.83 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=99.6
Q ss_pred cCccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 176 EHEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
..++.|++..+++|.+.+...- +-..++-+.|+|++|+|||++|+.+++.... .| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~-----~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TF-----IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CE-----Eecch---
Confidence 3568999999999988774321 1123456889999999999999999886431 22 22211
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hh---hHhhhhccccc--CC
Q 006107 247 VFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----------YS---LWVDLKAPFLA--AA 310 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 310 (661)
.++..... + .........+...-...+.+|+|||++... .. .+..+...+.. ..
T Consensus 190 -~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11111110 0 000111112222223467899999997531 11 12222222221 23
Q ss_pred CCcEEEEEeCChhhh-----cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVA-----STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||...... ........+.+...+.++..++|..+........ ... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 466788888754221 1112235688999999999999988764432211 111 356777787764
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.8e-05 Score=86.44 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc------------------CCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD------------------SKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~w 238 (661)
.+++|-+.-++.|..++... .-...+.++|++|+||||+|+.+.+..--.. +.|...++
T Consensus 16 ~divGq~~v~~~L~~~i~~~---~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ---RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 46899999999999888653 2335678999999999999999865431100 01111122
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK----AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSK 314 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 314 (661)
++.+. ....++....+.. -..+++-++|+|+++.......+.++..+-.....+.
T Consensus 93 i~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 21111 1112222211111 1235667999999998877777778777766555666
Q ss_pred EEEEeCC-hhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 315 MIITTRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 315 ilvTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
+|++|.+ ..+... ......+++.+++.++....+.+.+...+.. ...+....|++.++|.+--+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 6665543 322211 1112568899999999988887765332211 12345678999999988633
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=88.66 Aligned_cols=196 Identities=13% Similarity=0.153 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-.. ... ....++.....+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG---RVAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC---CCceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHHhc
Confidence 57899999999998888653 2235678999999999999999976532110 000 0011122223333332
Q ss_pred HhccCC-----CCCCCHHHHHH---HHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhc
Q 006107 257 SITSAA-----SDLNTLNEVQV---QLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAS 326 (661)
Q Consensus 257 ~l~~~~-----~~~~~~~~l~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~ 326 (661)
...... ......++... .+... ..+++-++|+|+++.......+.++..+-.....+.+|++|.. ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 211100 01112222222 11111 1245678999999888766777777776655556666666543 33322
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
. ......+.+.+++.++....+.+.+...+.. ...+.+..|++.++|.+..+....
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1223568889999999988888776433221 123567889999999997554443
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.7e-05 Score=80.25 Aligned_cols=184 Identities=15% Similarity=0.212 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-----CCCCEEE-EEEeCCCCCHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-----SKFDVKA-WVCVSDNFDVFNI 250 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~~f~~~~-wv~v~~~~~~~~~ 250 (661)
.+++|.+..++.+.+.+... .-.+.+.++|++|+||||+|+.+.+...... ..|...+ -++.....+. +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~---~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 92 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN---HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DD 92 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HH
Confidence 46899999999999988643 2345788999999999999999876532110 0121111 1111111111 11
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC-Chhhhcc-c
Q 006107 251 LKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR-HSDVAST-M 328 (661)
Q Consensus 251 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr-~~~v~~~-~ 328 (661)
...+++.+.. .-..+++-++++|+++......++.+...+......+.+|++|. ....... .
T Consensus 93 i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 93 IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1122221110 01124456899999987765667777665544344555655553 2222221 1
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
.....++..++++++....+...+...+.. ...+....|+..++|.+-.+..
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~----i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK----FEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHHHH
Confidence 223578899999999998888776443221 1245678888999997764433
No 73
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=3.6e-05 Score=78.94 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=132.0
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
+..++||+.|+..+..|+...-.....+-+-|.|.+|.|||.+...++.+..-.. .-..+++++...-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHHHHH
Confidence 4568999999999999987743344556788999999999999999988765332 222557777666567788888888
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhHhhhhccc-ccCCCCcEEEEEeCChh------hhc
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDG--KRFLLVLDDVRNEDYSLWVDLKAPF-LAAAPNSKMIITTRHSD------VAS 326 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~ilvTTr~~~------v~~ 326 (661)
..+...........+.+..+.....+ ..+|+|+|..+......-..+...| ++.-+++++|+.--... ...
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 88743332222224445555555433 3689999998764311111222222 23345666665322111 111
Q ss_pred cc-----CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC---CHHHHH
Q 006107 327 TM-----GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT---RHAAWD 398 (661)
Q Consensus 327 ~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~---~~~~w~ 398 (661)
.+ .....+.-.|-+.++..++|..+........ .+....+-+++++.|.---+..+-...+.. -..+|+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~---~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI---FLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc---cchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHh
Confidence 11 1225677789999999999999874433322 122334455555555555444444444433 234455
Q ss_pred HH
Q 006107 399 DI 400 (661)
Q Consensus 399 ~~ 400 (661)
..
T Consensus 385 ~~ 386 (529)
T KOG2227|consen 385 KI 386 (529)
T ss_pred hc
Confidence 44
No 74
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.7e-05 Score=84.75 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCC--EEEEEEeCCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD--VKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i 254 (661)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.. ... ...+ ..+......+.|
T Consensus 24 ~dliGq~~~v~~L~~~~~~g---ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~-~~~~~~~~~----~~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG---RIAQAFMLTGVRGVGKTTTARILARALNYEG-PDGDGGPTI----DLCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHhhCcCC-ccccCCCcc----ccCcccHHHHHH
Confidence 56899999999999988653 2345688999999999999999976532110 000 0000 001111111222
Q ss_pred HHHhccC-----CCCCCCHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhh
Q 006107 255 LESITSA-----ASDLNTLNEVQVQLKK----AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDV 324 (661)
Q Consensus 255 l~~l~~~-----~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v 324 (661)
...-... .......+++...+.. -..+++-++|+|+++.......+.++..+-.....+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 2111110 0011223332222111 122455689999999887777778887776655667766555 43333
Q ss_pred hccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 325 ASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
...+ .....+++.+++.++....+.+.+...+.. ...+....|++.++|.+.-+....
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 223578999999999999998876433221 123566889999999987655443
No 75
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.22 E-value=2.7e-06 Score=86.72 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhccCCCCC
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF--DVFNILKALLESITSAASDL 265 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~~~ 265 (661)
++++++..-..+ .-..|+|++|+|||||++.+++..... +|+..+||.+.+.. .+.++++.+...+-....+.
T Consensus 158 rvID~l~PIGkG---QR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPIGKG---QRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeecccccC---ceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 455655443212 357899999999999999999986543 79999999999887 67788877764333222222
Q ss_pred CCHHH------HHHHHHhh-cCCceEEEEEeCCCCC
Q 006107 266 NTLNE------VQVQLKKA-VDGKRFLLVLDDVRNE 294 (661)
Q Consensus 266 ~~~~~------l~~~l~~~-l~~kr~LlVlDdv~~~ 294 (661)
..... ........ -.+++++|++|++...
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 22111 11111111 3689999999999643
No 76
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=4.3e-05 Score=87.20 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. ... ...+......+.|..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r---i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~-------~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR---INHAYLFSGPRGCGKTSSARILARSLNCVE-GPT-------STPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHhCccc-CCC-------CCCCcccHHHHHHHc
Confidence 468999999999999886532 234678999999999999999876532100 000 000011111111111
Q ss_pred Hh-------ccCCCCCCCHHHHHH---HHH-hhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC-Chhh
Q 006107 257 SI-------TSAASDLNTLNEVQV---QLK-KAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR-HSDV 324 (661)
Q Consensus 257 ~l-------~~~~~~~~~~~~l~~---~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr-~~~v 324 (661)
.- .........+++... .+. .-..++.-++|||+++......++.|+..+-.....+.+|++|. ...+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 10 000001112222222 111 11235566899999999988888888888876556666665554 3344
Q ss_pred hccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 325 ASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
...+ .....|++.+++.++..+++.+.+-..+.. ...+....|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 3322 234678999999999988887765322211 12345578899999988543
No 77
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=6.6e-05 Score=82.14 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|-+..++.|.+.+... .-...+.++|+.|+||||+|+.+.+..--.. ... ...++.-...+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~---ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~-------~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN---RVAPAYLFSGTRGVGKTTIARIFAKALNCET-APT-------GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHhccccC-CCC-------CCCCcccHHHHHHhc
Confidence 46899888888888887543 2235788999999999999999876532110 000 001111122222221
Q ss_pred HhccCC-----CCCCCHHHHHHHHHhh-----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhh
Q 006107 257 SITSAA-----SDLNTLNEVQVQLKKA-----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVA 325 (661)
Q Consensus 257 ~l~~~~-----~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~ 325 (661)
...... ......+.... +.+. ..+++-++|||+++......++.++..+-.......+|++|.. ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 00111222211 2111 2356679999999988777778887776544445566665544 3333
Q ss_pred cc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 006107 326 ST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP-LAAKTLEGLL 389 (661)
Q Consensus 326 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~~~l 389 (661)
.. ......+++.+++.++....+...+...... ...+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 2223568899999999998888766433221 22456788999999975 5777665544
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=8e-05 Score=81.73 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.+...-.. ..+ + ..++.-...+.+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~---r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG---RINHAYLFSGPRGCGKTSSARILARSLNCAQ-GPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCC---C----CcccccHHHHHhhc
Confidence 56899999999999998653 2345678999999999999999876432100 000 0 00111111111111
Q ss_pred Hhcc-------CCCCCCCHHH---HHHHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhh
Q 006107 257 SITS-------AASDLNTLNE---VQVQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDV 324 (661)
Q Consensus 257 ~l~~-------~~~~~~~~~~---l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v 324 (661)
.-.. ........++ +...+... ..+++-++|+|+++.......+.++..+-.......+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000 0000111222 22222111 13455689999999988788888888776655566666555 43433
Q ss_pred hcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHHHH
Q 006107 325 AST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLEGL 388 (661)
Q Consensus 325 ~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~~ 388 (661)
... ......+++.+++.++..+.+.+.+...+.. ...+....|++.++|.+- ++..+-.+
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~----i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV----VDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322 2234679999999999988887765433221 123456788999999875 44444443
No 79
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00013 Score=78.98 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc--cc----------------CCCCEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV--AD----------------SKFDVKAW 238 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~----------------~~f~~~~w 238 (661)
.+++|-+.-+..|.+++... .-...+.++|+.|+||||+|+.+.....- .. +.|...++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~---~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ---RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred HHccChHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 46889999999999988653 23346778999999999999988664210 00 00111111
Q ss_pred EEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 239 VCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 239 v~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
++.+..... ++...+...+.. -..+++-++|+|+++.......+.+...+....+...+|+
T Consensus 93 idaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 93 IDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred EeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 111111000 111122212211 1235667999999998776667777776655444555555
Q ss_pred Ee-CChhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 318 TT-RHSDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 318 TT-r~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
+| +...+... ......+.+.+++.++....+.+.+-..+.. ...+.+..|+..++|.+..+....
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 33333221 2233578899999999988888766433211 123456788899999876554444
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.15 E-value=2.3e-05 Score=90.49 Aligned_cols=184 Identities=13% Similarity=0.121 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEE-EEeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAW-VCVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~w-v~v~~~~~~~~~~~ 252 (661)
.+++||+.++.+++..|.... ..-+.++|++|+||||+|+.+.+.... ...-.+..+| ++++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~----~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~--------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR----QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL--------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC----cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh---------
Confidence 468999999999999886542 123569999999999999998876321 1001222332 22221
Q ss_pred HHHHHhccCCCCCCCHHH-HHHHHHhhc-CCceEEEEEeCCCCCCh-------hhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 253 ALLESITSAASDLNTLNE-VQVQLKKAV-DGKRFLLVLDDVRNEDY-------SLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~-l~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
+..........+. +...+.+.- .+++.+|++|+++.... .+-..++.+.... ...++|-||...+
T Consensus 254 -----l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e 327 (852)
T TIGR03345 254 -----LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAE 327 (852)
T ss_pred -----hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHH
Confidence 0000000111111 122222221 24689999999976421 1111122232221 2356666666543
Q ss_pred hhcc-------cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 324 VAST-------MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 324 v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.... ......+.+++++.++..+++....-.-.....-....+....+++.+.+..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 3221 1234689999999999999975443111100011122344566666666543
No 81
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=2.4e-05 Score=80.80 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=84.9
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
-.+++|.+...+.+..++... ..+.++.++|++|+|||++|+.+++... . ....++.+. .. .+..+..+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~---~~~~~lll~G~~G~GKT~la~~l~~~~~-----~-~~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG---RIPNMLLHSPSPGTGKTTVAKALCNEVG-----A-EVLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC---CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----c-cceEeccCc-cc-HHHHHHHH
Confidence 357899999999999988642 3456888899999999999999987532 1 123344433 12 11111211
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccCCCCcEEEEEeCChhhh-cc-cCCCc
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAAAPNSKMIITTRHSDVA-ST-MGPIE 332 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~-~~-~~~~~ 332 (661)
..+.... .+.+.+-++|+||++.. .......+...+.....++++|+||...... .. .....
T Consensus 89 ~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1111000 01134558999999876 3222333433344445677888888653211 11 11224
Q ss_pred eeecCCCChHhHHHHHHH
Q 006107 333 HYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 333 ~~~l~~L~~~e~~~Lf~~ 350 (661)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 566667777776655543
No 82
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.12 E-value=6.1e-05 Score=71.99 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=77.5
Q ss_pred CCCCCcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHH
Q 006107 171 SSVPTEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 171 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 250 (661)
..++.-..++|.+.+++.|++-...--.+....-+.++|..|.|||+|++.+.+....++ .+ -|.+..
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LR-lIev~k------- 88 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LR-LIEVSK------- 88 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ce-EEEECH-------
Confidence 344556789999999999887765422233445677899999999999999988654332 11 122221
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccC---CC-CcEEEEEeCChhhh
Q 006107 251 LKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAA---AP-NSKMIITTRHSDVA 325 (661)
Q Consensus 251 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~-gs~ilvTTr~~~v~ 325 (661)
.+..++..+...++. ...||+|++||+.-. .......+++.+..+ .+ +..|..||..++..
T Consensus 89 ------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 ------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 223344445555543 357999999998532 234555665555332 22 33444555544443
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.12 E-value=0.00011 Score=78.51 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=94.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|++|+|||+|++.+++...... .-..+++++. .++...+...+... ..+.....+. +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~~~~~----~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFKEKYR----S 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHHHHHH----h
Confidence 34688999999999999999998754221 1124556643 34444555544321 2233322222 2
Q ss_pred ceEEEEEeCCCCCChhh-H-hhhhccccc-CCCCcEEEEEeCCh-h--------hhcccCCCceeecCCCChHhHHHHHH
Q 006107 282 KRFLLVLDDVRNEDYSL-W-VDLKAPFLA-AAPNSKMIITTRHS-D--------VASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 282 kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTTr~~-~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
.-+|+|||++...... + +.+...+.. ...+..+|+|+... . +...+.....+.+.+.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2389999998643211 1 223322221 12355677877642 1 11222233468899999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
+.+..... ...+++...|++.+.|.+-.+.-
T Consensus 279 ~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 279 KKAEEEGL----ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHH
Confidence 88744321 12256678888888888765443
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=7.9e-05 Score=82.37 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE-eCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC-VSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~il 255 (661)
.+++|-+..+..|.+++... .-...+.++|+.|+||||+|+.+.+..--.. ..+...|.. +...+..-...+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~---ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHHHh
Confidence 56899999888888888543 2334688999999999999988866532110 110001110 001111112222221
Q ss_pred HHhccC-----CCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhhh
Q 006107 256 ESITSA-----ASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDVA 325 (661)
Q Consensus 256 ~~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v~ 325 (661)
..-... .......+++...+... ..+.+-++|+|+++.......+.++..+-.....+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 111000 00111233333222111 23455688999999887667777877776654556655544 433333
Q ss_pred cc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 326 ST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 326 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
.. ......+++.+++.++....+.+.+...+. ....+.+..|++.++|..--+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHH
Confidence 22 233467999999999988888776533221 112456788999999976533
No 85
>PRK06620 hypothetical protein; Validated
Probab=98.10 E-value=0.00012 Score=70.32 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=82.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
+.+.|+|++|+|||+|++.+++.... .++. ..+.. +. .. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~--~~~~~---------------------~~-------~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIK--DIFFN---------------------EE-------IL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--------EEcc--hhhhc---------------------hh-------HH-hc
Confidence 56899999999999999988765321 1111 00000 00 01 12
Q ss_pred eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh-------hcccCCCceeecCCCChHhHHHHHHHhhcCC
Q 006107 283 RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV-------ASTMGPIEHYNLKSLLDDDCWSIFIKHALEG 355 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 355 (661)
.-+|++||++.........+...+. ..|..+|+|++.... .+.+...-.+++++++.++...++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899998542222222222222 356789998875322 1222333579999999999888887776422
Q ss_pred CCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 356 RDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 356 ~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
.. ...+++.+-|++.+.|.--.+.-+-.
T Consensus 164 -~l---~l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 164 -SV---TISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred -CC---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 11 12256778888888887665544433
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00012 Score=81.35 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+....--...... ..+.........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~---rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC~~C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN---KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPCQECIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCchhHHHHhhc
Confidence 56899999999999988653 23456789999999999999988654211000000 000000000000
Q ss_pred ----HhccCCCCCCCHH---HHHHHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEE-EEeCChhhhcc
Q 006107 257 ----SITSAASDLNTLN---EVQVQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMI-ITTRHSDVAST 327 (661)
Q Consensus 257 ----~l~~~~~~~~~~~---~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTr~~~v~~~ 327 (661)
-+..........+ ++...+... ..+++-++|+|+++......+..++..+-.....+.+| +|+....+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000000001122 222222211 23566699999999887777888877765544455555 45444444322
Q ss_pred -cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 328 -MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 328 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
......+++.+++.++....+...+...+.. ...+.+..|++.++|.+.-+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2333679999999999998888765332211 1134567899999997754433
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00012 Score=81.39 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc--------------------ccCCCCEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV--------------------ADSKFDVK 236 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--------------------~~~~f~~~ 236 (661)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+.....- ...+|+.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~---~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN---KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 46899999999999988653 23456889999999999999887654210 0012221
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEE
Q 006107 237 AWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMI 316 (661)
Q Consensus 237 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 316 (661)
..++.+......+ ++.++.++... -..+++-++|+|+++......++.++..+-.....+.+|
T Consensus 93 ~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 1222211111111 11111111110 012445588999999988777888888776655566666
Q ss_pred EEe-CChhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 317 ITT-RHSDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 317 vTT-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
++| ....+...+ .....+++.+++.++....+.+.+...+-. ...+.+..|++.++|..--+...
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 444443322 233679999999999998888765433211 12345688999999977644333
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=5.3e-05 Score=75.78 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=104.7
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
++.+.+|+.++..+..++.... ..-+..|.|+|.+|.|||.+.+.+++.... ..+|+++-+.++...++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~-~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS-CTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC-cccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHHH
Confidence 4678899999999999886543 234566799999999999999999987532 358999999999999999999
Q ss_pred HHhccCCCCCC----CHHH---HHHHHHh--hc--CCceEEEEEeCCCCCChh---hHhhhhcccccCCCCcEEEEEeCC
Q 006107 256 ESITSAASDLN----TLNE---VQVQLKK--AV--DGKRFLLVLDDVRNEDYS---LWVDLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 256 ~~l~~~~~~~~----~~~~---l~~~l~~--~l--~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTTr~ 321 (661)
........+.. +.+. ....+.+ .. .++.++||||+++..... -+..+.....-.....-+|+++..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 99852221111 1122 2222222 11 256899999999764311 111111111111122344444432
Q ss_pred h---hhhcccCCC--ceeecCCCChHhHHHHHHHh
Q 006107 322 S---DVASTMGPI--EHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 322 ~---~v~~~~~~~--~~~~l~~L~~~e~~~Lf~~~ 351 (661)
. .....++.. .++....-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 222223433 34566778888888887653
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=5.6e-05 Score=75.47 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=80.6
Q ss_pred ccccchhhHHHHHHHHhc---------C--CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 178 EVFGREEDKAKILDMVNT---------S--SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~---------~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
.++|.+..+++|.+.... . ...+....+.++|++|+||||+|+.+++.....+ .-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecH---
Confidence 478888777666533211 0 1123445678999999999999999976432111 111112233322
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC--------hhhHhhhhcccccCCCCcEEEEE
Q 006107 247 VFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED--------YSLWVDLKAPFLAAAPNSKMIIT 318 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 318 (661)
.++... ..+ .........+... . .-+|++|+++... ....+.+...+........+|++
T Consensus 83 -~~l~~~----~~g-----~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 -ADLVGE----YIG-----HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -HHhhhh----hcc-----chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111111 100 1111222223222 1 2489999997632 12233444444433333455555
Q ss_pred eCChhhhc------c-cCC-CceeecCCCChHhHHHHHHHhhc
Q 006107 319 TRHSDVAS------T-MGP-IEHYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 319 Tr~~~v~~------~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
+....... . ... ...+++++++.++..+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54322211 0 111 24588999999999999987763
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=98.07 E-value=0.00018 Score=72.38 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=72.8
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
.+.++|++|+||||+|+.+++.....+ .-...-|+.++. .++ .....+.. .......+.+. .+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a-~g-- 123 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA-MG-- 123 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc-cC--
Confidence 477899999999999999976532111 111122444442 122 22221111 11122223332 22
Q ss_pred EEEEEeCCCCC---------ChhhHhhhhcccccCCCCcEEEEEeCChhhhccc--------CCCceeecCCCChHhHHH
Q 006107 284 FLLVLDDVRNE---------DYSLWVDLKAPFLAAAPNSKMIITTRHSDVASTM--------GPIEHYNLKSLLDDDCWS 346 (661)
Q Consensus 284 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~--------~~~~~~~l~~L~~~e~~~ 346 (661)
-+|+||++... .......+...+.....+.+||+++......... .....+...+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999753 1122233444444444556777777543332111 122568899999999999
Q ss_pred HHHHhhcC
Q 006107 347 IFIKHALE 354 (661)
Q Consensus 347 Lf~~~~~~ 354 (661)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98877643
No 91
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.06 E-value=0.0001 Score=74.32 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=72.7
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
-+.++|++|+|||++|+.+.+.....+ .....-|+.++. .++ ...+.+.. .......+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cC
Confidence 577999999999999977765432221 221123444442 122 22221111 11222233332 23
Q ss_pred EEEEEeCCCCC---------ChhhHhhhhcccccCCCCcEEEEEeCChhhhccc--------CCCceeecCCCChHhHHH
Q 006107 284 FLLVLDDVRNE---------DYSLWVDLKAPFLAAAPNSKMIITTRHSDVASTM--------GPIEHYNLKSLLDDDCWS 346 (661)
Q Consensus 284 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~--------~~~~~~~l~~L~~~e~~~ 346 (661)
-+|+||++... ....+..+...+.....+.+||+++......... .....+++.+++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999743 1223344555554444566777776543222111 112568899999999999
Q ss_pred HHHHhhc
Q 006107 347 IFIKHAL 353 (661)
Q Consensus 347 Lf~~~~~ 353 (661)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9887763
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00023 Score=76.98 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|-+..++.|...+... .-..++.++|+.|+||||+|+.+.+..--.. ..+. ..+........+..
T Consensus 14 deiiGqe~v~~~L~~~I~~g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~-~~~~-------~pC~~C~~C~~~~~ 82 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN---RLAHAYLFSGLRGSGKTSSARIFARALVCEQ-GPSS-------TPCDTCIQCQSALE 82 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCC-CCCC-------CCCcccHHHHHHhh
Confidence 56899998889998888543 2345778999999999999998765421000 0000 00000000000000
Q ss_pred Hhcc-----CCCCCCCHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhc
Q 006107 257 SITS-----AASDLNTLNEVQVQLKK----AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVAS 326 (661)
Q Consensus 257 ~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~ 326 (661)
.... ........+.....+.. -..+++-++|+|+++.......+.++..+-.....+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 00000112222222211 012456689999999988777888877776555667777766543 2211
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
. ......+++.+++.++....+.+.+...+.. ...+.+..|++.++|.+.-+..+.
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 1223678999999999999887765433221 124567899999999996555443
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=5.1e-05 Score=80.12 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred CccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|++..+++|.+.+...- +-..++-|.++|++|+|||++|+.+++.... . |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---T-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---C-----EEEeeh----
Confidence 468899999999988764311 1134556889999999999999999886321 2 222221
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hhhHhhhhc---cccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----------YSLWVDLKA---PFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~---~l~~--~~~ 311 (661)
.++.. ...+ .........+...-...+.+|+|||++... ......+.. .+.. ...
T Consensus 199 ~~l~~----~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELVQ----KFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHhH----hhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11111 1100 011111112222223567899999997531 111111222 1211 123
Q ss_pred CcEEEEEeCChhhhcc-c----CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 312 NSKMIITTRHSDVAST-M----GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 312 gs~ilvTTr~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
+..||.||........ + .-...+++.+.+.++..++|..+....... .... ...+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCCC
Confidence 5667777765432211 1 123568999999999999998876432211 1111 256667777653
No 94
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.8e-05 Score=81.25 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=63.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCCHH------HHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN--FDVFNILKALLESITSAASDLNTLN------EVQVQ 274 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~l~~~ 274 (661)
..++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.++..+-....+..... .....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 378999999999999999999986532 7999999999866 7889999998655443333322211 11111
Q ss_pred HHhh-cCCceEEEEEeCCCCC
Q 006107 275 LKKA-VDGKRFLLVLDDVRNE 294 (661)
Q Consensus 275 l~~~-l~~kr~LlVlDdv~~~ 294 (661)
.... -.+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3589999999999654
No 95
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00018 Score=77.26 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc--------------------CCCCEE
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD--------------------SKFDVK 236 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~~f~~~ 236 (661)
.+++|.+..+..|.+++... .-...+.++|++|+||||+|+.+.+..--.. .+++ .
T Consensus 17 ~diiGq~~~v~~L~~~i~~~---~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN---RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 57899999999999988643 2235688999999999999998866431110 0111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHH-hhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEE
Q 006107 237 AWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLK-KAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKM 315 (661)
Q Consensus 237 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 315 (661)
+++.-....... ...++...+. ....+.+-++|+|+++.......+.+...+-.....+.+
T Consensus 93 ~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 111110000111 1111111111 011255678999999877655666777776655556667
Q ss_pred EEEeCC-hhhhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHH
Q 006107 316 IITTRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTL 385 (661)
Q Consensus 316 lvTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 385 (661)
|++|.. ..+... ......+++.++++++....+.+.+-..+. ....+.+..|++.++|.+. |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 222221 122357899999999998888876533221 1224567889999999775 44443
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00022 Score=79.27 Aligned_cols=197 Identities=14% Similarity=0.157 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.+..--.. .... ....+...+..+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r---l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~-----~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR---IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKP-----TPEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC---CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCC-----CCCCCcccHHHHHHhc
Confidence 468999999999998886532 234678999999999999999977532110 0000 0011112223333322
Q ss_pred HhccC-----CCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhc
Q 006107 257 SITSA-----ASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAS 326 (661)
Q Consensus 257 ~l~~~-----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~ 326 (661)
..... .......+.....+... ..+++-++|+|+++......++.++..+-.....+.+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 21110 00112233332222111 1245568999999988777788887777654445555555543 33322
Q ss_pred cc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 TM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
.+ .....+++.+++.++....+...+...+.. ...+.+..|++.++|.+..+..+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~----is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE----IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 223568888999998888777665332211 113457889999999886554443
No 97
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.01 E-value=4.2e-05 Score=79.98 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=77.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++...... .|+.+.||.+++..+..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~r- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGYR- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhcccC-
Confidence 45788899999999998643 2577899999999999999988765444 678889999999888776654331
Q ss_pred HhccCCCCCCCH-HHHHHHHHhhc--CCceEEEEEeCCCCCChhh-Hhhhhccc
Q 006107 257 SITSAASDLNTL-NEVQVQLKKAV--DGKRFLLVLDDVRNEDYSL-WVDLKAPF 306 (661)
Q Consensus 257 ~l~~~~~~~~~~-~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l 306 (661)
.......-. .-....+.... .+++++||+|++...+... +..+...+
T Consensus 247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 111010000 01122222222 2468999999998876443 44444433
No 98
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.01 E-value=1.1e-06 Score=77.66 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=46.6
Q ss_pred CCcccCcC--CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 584 NISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
++..+|.. +|.+|..|+++++.|++||.+| .|+.|+.|++. ...+..+|.++|.+.-|+.+|+..+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhcccc
Confidence 44455554 7777777777777777777777 77777777774 4677777777777777776666443
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00029 Score=78.09 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+.+..--.. ..+ ...++.......+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~---~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-~~~-------~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG---RVAHAFLFTGARGVGKTSTARILAKALNCEQ-GLT-------AEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHhhcCCC-CCC-------CCCCCccHHHHHHhc
Confidence 57899999899999888653 2345678999999999999998876531100 000 000111111111111
Q ss_pred HhccC-----CCCCCCHH---HHHHHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhhhc
Q 006107 257 SITSA-----ASDLNTLN---EVQVQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDVAS 326 (661)
Q Consensus 257 ~l~~~-----~~~~~~~~---~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v~~ 326 (661)
.-... .......+ ++...+... ..+++-++|+|+++..+....+.++..+-.....+.+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 00000 00011112 222222111 12455689999999887777788887776555566666555 4343432
Q ss_pred cc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHHHHhcc---C-CHHHHHHH
Q 006107 327 TM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLEGLLRT---T-RHAAWDDI 400 (661)
Q Consensus 327 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~~l~~---~-~~~~w~~~ 400 (661)
.+ .....+++.+++.++....+...+...+.. ...+....|++.++|..- ++..+-.++.. . +.+.+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~l 240 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 22 223568889999999888887655332211 123556789999999764 44444333222 2 55555544
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=4.5e-05 Score=87.40 Aligned_cols=158 Identities=14% Similarity=0.157 Sum_probs=86.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.... .....+..+|. ++ ...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~----~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l--- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK----KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSL--- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC----CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHH---
Confidence 468999999999999886532 123568999999999999999876421 11011233332 11 1111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCCCh--------hhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNEDY--------SLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
... ..-..+.+.....+.+.+ ..++.+|++|+++.... ..-..++.+.... ...++|-+|...+.
T Consensus 250 -~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 250 -LAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEY 323 (731)
T ss_pred -hhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHH
Confidence 100 000112222222232222 34678999999974310 1112222222221 12355555544322
Q ss_pred hcc-------cCCCceeecCCCChHhHHHHHHHhh
Q 006107 325 AST-------MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 325 ~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
... ......+++.+++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 1234679999999999999998654
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.0003 Score=75.47 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=94.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
...+.|+|++|+|||+|++.+++..... +.. .++|++. .++...+...+... ..+.. .+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~f----~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNEF----REKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHHH----HHHHH
Confidence 3458999999999999999999875422 222 4566643 45566666555321 22222 22222
Q ss_pred CceEEEEEeCCCCCC-hhhH-hhhhccccc-CCCCcEEEEEeC-Chhh--------hcccCCCceeecCCCChHhHHHHH
Q 006107 281 GKRFLLVLDDVRNED-YSLW-VDLKAPFLA-AAPNSKMIITTR-HSDV--------ASTMGPIEHYNLKSLLDDDCWSIF 348 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTTr-~~~v--------~~~~~~~~~~~l~~L~~~e~~~Lf 348 (661)
.+.-+|++||++... ...+ ..+...+.. ...|..||+||. .+.- ...+...-.+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999997531 1111 122222211 123457888875 3221 112233457889999999999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 349 IKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
.+.+..... ....++...|++.+.|.--.+.-
T Consensus 273 ~~~~~~~~~----~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 273 RKMLEIEHG----ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHhcCC----CCCHHHHHHHHhccccCHHHHHH
Confidence 888643221 12246678888888887554443
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=7.1e-05 Score=72.82 Aligned_cols=186 Identities=15% Similarity=0.157 Sum_probs=112.8
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEE-EEeCCCCCHHHHHHH
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAW-VCVSDNFDVFNILKA 253 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~ 253 (661)
.-.+++|-+..+..|.+.+.. ...++...+||+|.|||+-|..++...--.+ .|.+++- .++|..-... +.+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-vvr- 106 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-VVR- 106 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-chh-
Confidence 345789999999988888865 2356788999999999999988776532222 4544432 2333221111 000
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhc--CCce-EEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAV--DGKR-FLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM- 328 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~- 328 (661)
....+...+........ ..++ -.+|||+++......|..++..+-.....++.|+.+..- .+...+
T Consensus 107 ---------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 107 ---------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ---------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 01111111111111000 1223 488999999999999999999888766677766554432 221111
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
..-..+.-++|..++...-+...+-.++... ..+..+.|++.++|---
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHH
Confidence 1124578899999999888887774444322 23456789999988644
No 103
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.94 E-value=1.4e-06 Score=76.89 Aligned_cols=106 Identities=10% Similarity=-0.038 Sum_probs=68.4
Q ss_pred cccccCCCCceEEeeccccC-CCCCc---hhhHhhHhhhhcCCc--ccCcC--CCCcceeecCCCCCcccccccc-cccc
Q 006107 547 FEVFYEIELLRTFLPFCIRG-GPNTS---YLRMEAWSGVFGNIS--AVDET--LKKCLQFLRPKYTSEREKKLSV-SIQN 617 (661)
Q Consensus 547 ~~~~~~~~~LrsL~~~~~~~-~~~~~---~~~~~~l~~~~~~l~--~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~ 617 (661)
+.+++.+++||.|.+.-... ..|.. +-...+|+....++. .||.. .|.-||-|.|+++..+.||+.+ +|.+
T Consensus 72 p~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTN 151 (264)
T ss_pred ChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcc
Confidence 34556666777665532111 11211 223345554333333 57776 7778888888888888888888 8888
Q ss_pred cceeecccccccccCCcccccccccccccccccccc
Q 006107 618 WNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHIGA 653 (661)
Q Consensus 618 Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~~~ 653 (661)
||.|.++. ..+-+||..|+.|+.|+-+++..+--+
T Consensus 152 lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 152 LQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred eeEEeecc-CchhhCcHHHHHHHHHHHHhcccceee
Confidence 88888887 678888888888888876555444333
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.94 E-value=0.00024 Score=76.82 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=94.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|++|+|||+|++.+.+...... .-..+++++. .++...+...+.. ...+.... .+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~------~~~~~~~~~~~~~-----~~~~~~~~----~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTS------EKFTNDFVNALRN-----NTMEEFKE----KYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEH------HHHHHHHHHHHHc-----CcHHHHHH----HHh-
Confidence 34688999999999999999998754221 1224555543 3344444444432 12222222 222
Q ss_pred ceEEEEEeCCCCCChh--hHhhhhccccc-CCCCcEEEEEeCChh---------hhcccCCCceeecCCCChHhHHHHHH
Q 006107 282 KRFLLVLDDVRNEDYS--LWVDLKAPFLA-AAPNSKMIITTRHSD---------VASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 282 kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTTr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
+.-+|||||++..... ..+.+...+.. ...|..+|+||.... +...+.....+++++.+.++...++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 2348999999764211 11223222211 123456777776431 12233344578999999999999999
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
+.+..... ...+++...|++.++|..-.+.-
T Consensus 291 ~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 291 KKAEEEGI----DLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHH
Confidence 88743211 12346678899999988765443
No 105
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=5.5e-06 Score=57.11 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=33.5
Q ss_pred CcceeecCCCCCcccccccc-cccccceeecccccccccCC
Q 006107 594 KCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGS 633 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP 633 (661)
.+|++|+|++|.|+.+|..+ +|.+|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 47999999999999999999 9999999999995 677765
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00027 Score=77.09 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=93.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|+|..|+|||.|++.+++...... .-..+++++ ..++...+...+.. ...+. +++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yit------aeef~~el~~al~~-----~~~~~----f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVS------SEEFTNEFINSIRD-----GKGDS----FRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEee------HHHHHHHHHHHHHh-----ccHHH----HHHHhhc-
Confidence 3589999999999999999998743211 112445554 34455555544432 11222 2222222
Q ss_pred eEEEEEeCCCCCCh-hhHhh-hhccccc-CCCCcEEEEEeCCh---------hhhcccCCCceeecCCCChHhHHHHHHH
Q 006107 283 RFLLVLDDVRNEDY-SLWVD-LKAPFLA-AAPNSKMIITTRHS---------DVASTMGPIEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 283 r~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 350 (661)
-=+|||||+..... ..|.. +...+.. ...|..|||||... .+.+.+...-.+.+.+.+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 24889999976532 22222 2222221 13356788888752 1222334456789999999999999998
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 351 HALEGRDLSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
++.... . ..-.++..-|++.+.+..-.+.-
T Consensus 458 ka~~r~-l---~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 458 KAVQEQ-L---NAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHhcC-C---CCCHHHHHHHHHhccCCHHHHHH
Confidence 874332 2 12246677788887776544433
No 107
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0005 Score=75.64 Aligned_cols=194 Identities=15% Similarity=0.148 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|-+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+..--.. .... ..+... ...+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~---~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~---~pC~~C----~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN---KIANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP---MPCGEC----SSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC---CCCccc----hHHHHHHc
Confidence 57899999999999988653 2345788999999999999999877532110 0000 000000 00111111
Q ss_pred Hhcc-----CCCCCCCHHHHHHHH---Hh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhc
Q 006107 257 SITS-----AASDLNTLNEVQVQL---KK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAS 326 (661)
Q Consensus 257 ~l~~-----~~~~~~~~~~l~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~ 326 (661)
.-.. ........++..... .. -..+++-++|+|+++......++.++..+-.....+.+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0000 000011222222211 11 12356668999999988877788888777655556666665543 33322
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
. ......++..+++.++....+.+.+...+.. ...+.+..|++.++|.+..+..+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 1223568899999999988888766433221 22456678999999988644443
No 108
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0006 Score=65.02 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=107.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHhhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLN--TLNEVQVQLKKAV 279 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~--~~~~l~~~l~~~l 279 (661)
.+++.++|.-|+|||.+.+.......- -+...-+--.+..+...+...++..+........ -.+...+.+....
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 358999999999999999955443221 1122212223456777888888888876322111 1223333333333
Q ss_pred -CCce-EEEEEeCCCCCChhhHhhhhcccccCCCCc---EEEEEeCCh--------hhhcccCCCce-eecCCCChHhHH
Q 006107 280 -DGKR-FLLVLDDVRNEDYSLWVDLKAPFLAAAPNS---KMIITTRHS--------DVASTMGPIEH-YNLKSLLDDDCW 345 (661)
Q Consensus 280 -~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTTr~~--------~v~~~~~~~~~-~~l~~L~~~e~~ 345 (661)
++++ ..+++||.+.......+.++........++ +|+..-..+ .....-..... |++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4677 999999999877666665544332222222 233322211 11111112234 899999999999
Q ss_pred HHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHH
Q 006107 346 SIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGL 388 (661)
Q Consensus 346 ~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 388 (661)
.++..+..+...+ .+-...+....|.....|.|.+|..++..
T Consensus 207 ~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9888876544322 12223456678999999999999887643
No 109
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.91 E-value=8.9e-07 Score=92.86 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=44.6
Q ss_pred hcCCcccCcC---CCCcceeecCCCCCcccccccc-cccccceeeccccc----ccccCCc
Q 006107 582 FGNISAVDET---LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHT----YLVTGSV 634 (661)
Q Consensus 582 ~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~----~l~~LP~ 634 (661)
..++..+|.+ +|.-|-|||||++.+..||+.| .|.+||||+|++.. .|+.||+
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc
Confidence 4566689998 9999999999999999999999 99999999998732 3567873
No 110
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.0004 Score=70.79 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc------------cccCCCCEEEEEEeCCC
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA------------VADSKFDVKAWVCVSDN 244 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------~~~~~f~~~~wv~v~~~ 244 (661)
.+++|.+..++.+...+... .-.+...++|+.|+||+++|..+.+..- +....+....|+.-...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~---rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN---RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 36789999999999988653 2346889999999999999977754421 00112222234321100
Q ss_pred CCHHHHHHHHHHHhc--cCCCCCCCHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 245 FDVFNILKALLESIT--SAASDLNTLNEVQVQLKKAV-----DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 245 ~~~~~~~~~il~~l~--~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
.+-..+-...+...+ ......-..++. +.+.+.+ .+.+-++|+|+++..+....+.++..+-... .+.+|+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 000000001111111 001111122222 2233222 3566799999999988778888888775444 445554
Q ss_pred Ee-CChhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 318 TT-RHSDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 318 TT-r~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
+| ....+...+ .....+++.++++++..+.+.+....... ......++..++|.|..+..+.
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHHH
Confidence 44 444443332 23367999999999999999876421110 1113578899999997665543
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.89 E-value=4e-05 Score=88.84 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=85.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.++..... ....-+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~----~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~-- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT----KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL-- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc----cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh--
Confidence 458999999999999996532 123469999999999999998776421 11011234442 1 111111
Q ss_pred HHHHhccCCCCCCCHHHHHH-HHHhhcCCceEEEEEeCCCCCC-------hhhHhhhhcccccCCCCcEEEEEeCChhhh
Q 006107 254 LLESITSAASDLNTLNEVQV-QLKKAVDGKRFLLVLDDVRNED-------YSLWVDLKAPFLAAAPNSKMIITTRHSDVA 325 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~-~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~ 325 (661)
.+.. -..+.++... .+...-..++.+|++|+++... ......++.+.... ...++|.+|..+...
T Consensus 248 -----ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~ 320 (821)
T CHL00095 248 -----AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYR 320 (821)
T ss_pred -----ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHH
Confidence 1111 1122222222 2222223568999999996321 01112232222222 234566666655432
Q ss_pred cc-------cCCCceeecCCCChHhHHHHHHH
Q 006107 326 ST-------MGPIEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 326 ~~-------~~~~~~~~l~~L~~~e~~~Lf~~ 350 (661)
.. ......+.+...+.++...++..
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 21 12335688888898888888764
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00035 Score=71.62 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDL 358 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 358 (661)
+++-++|+|+++..+....+.++..+-....++.+|+||.+. .+...+ ..-..+.+.+++.+++.+.+.+.. ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 344455789999998888888888876655677777777764 333222 233678999999999998887653 111
Q ss_pred CcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 359 SAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 359 ~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1223457788999999866544
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00073 Score=74.59 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.+..--.. ..+ ..+++.....+.+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~---~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK---ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPD-------GEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCccHHHHHHhc
Confidence 578999999999999886532 345677899999999999998865421100 000 011111122222221
Q ss_pred HhccC-----CCCCCCHHHH---HHHHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe-CChhhhc
Q 006107 257 SITSA-----ASDLNTLNEV---QVQLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT-RHSDVAS 326 (661)
Q Consensus 257 ~l~~~-----~~~~~~~~~l---~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-r~~~v~~ 326 (661)
..... .......++. ...+.. -..++.-++|+|+++......++.++..+-.......+|++| ....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 11100 0011122222 222211 123566788999999887777888877765544455555544 3333322
Q ss_pred c-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 327 T-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 327 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
. ......++..+++.++....+...+...+.. ...+....|++.++|.+.-+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~----i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIE----YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 2 2223568889999999988888766332211 123456788889999876443
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00052 Score=71.21 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=90.3
Q ss_pred CccccchhhHHH-HHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAK-ILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~-l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.-++|-...... +...+.. ..+.....+.|+|+.|.|||.|++.+.+.... .......+.+ +.+.....++
T Consensus 88 nFv~g~~N~~A~aa~~~va~-~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~----~se~f~~~~v 159 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYL----TSEDFTNDFV 159 (408)
T ss_pred heeeCCchHHHHHHHHHHHh-ccCCcCCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEec----cHHHHHHHHH
Confidence 335565544332 2222322 22234568999999999999999999997543 2222222222 3345555555
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----hhhHhhhhcccccCCCCcEEEEEeCCh--------
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----YSLWVDLKAPFLAAAPNSKMIITTRHS-------- 322 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~ilvTTr~~-------- 322 (661)
..+.. .-...+++.. .-=++++||++-.. +.....+...+.. .|-.||+|++..
T Consensus 160 ~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 160 KALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhcccc
Confidence 55442 1122344443 23388999997632 1222222233332 344899988652
Q ss_pred -hhhcccCCCceeecCCCChHhHHHHHHHhhcCC
Q 006107 323 -DVASTMGPIEHYNLKSLLDDDCWSIFIKHALEG 355 (661)
Q Consensus 323 -~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 355 (661)
...+.+...-.+.+.+.+.+....++.+.+...
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 222333445679999999999999999876433
No 115
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=3.2e-05 Score=68.28 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEeccCCChHHHHHHHHhccc
Q 006107 205 IPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999874
No 116
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00074 Score=72.29 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=87.9
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|++|+|||+|++.+++..... ...+++++ ...+...+...+... .. ..++....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 3568899999999999999999875321 22344553 334444555444321 11 12333333
Q ss_pred ceEEEEEeCCCCCChhhH--hhhhccccc-CCCCcEEEEEeCCh---------hhhcccCCCceeecCCCChHhHHHHHH
Q 006107 282 KRFLLVLDDVRNEDYSLW--VDLKAPFLA-AAPNSKMIITTRHS---------DVASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 282 kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTTr~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
..-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++...++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 334888999976432111 222222211 12356788887542 112223334678899999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
+.+-..+. ...+++..-|+..+.|.-
T Consensus 282 ~k~~~~~~----~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSI----RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhcCCCH
Confidence 87743221 122455566766666543
No 117
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00017 Score=81.82 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
..++||+.+++++++.|.... . .-+.++|++|+|||++|+.++....... ...++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l--- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--K--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL--- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--C--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH---
Confidence 358999999999999887632 1 2345899999999999999886532111 0123444421 11111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCC--------ChhhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNE--------DYSLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
+ .+ ..-..+.+.....+.+.+ +..+.+|+||+++.. ...+...+..++... ...++|-+|.....
T Consensus 254 -l---aG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 -L---AG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEF 327 (758)
T ss_pred -h---cc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHH
Confidence 1 11 001112222222222222 345679999999742 122233333444332 23455555554443
Q ss_pred hc-------ccCCCceeecCCCChHhHHHHHHHhh
Q 006107 325 AS-------TMGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 325 ~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
.. .......+.+.+.+.++..+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 21 11234679999999999999988653
No 118
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00031 Score=81.80 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++||+.++++++..|.... ..-+.++|++|+|||++|..+........ ......+|.- ++..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~----~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l--- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT----KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL--- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC----CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH---
Confidence 458999999999999986532 12345899999999999998877632110 0012223321 11111
Q ss_pred HHHHhccCCCCCCCHHHH-HHHHHhhc-CCceEEEEEeCCCCCCh-------hhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 254 LLESITSAASDLNTLNEV-QVQLKKAV-DGKRFLLVLDDVRNEDY-------SLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l-~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
+. +. ....+.+.. ...+...- .+++.+|++|+++.... .+-..++.+.... ...++|-+|..+..
T Consensus 241 -~a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 241 -IA---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEY 314 (852)
T ss_pred -hh---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHH
Confidence 10 00 001122222 22222221 24689999999985420 1112233333322 23455555554433
Q ss_pred hc-------ccCCCceeecCCCChHhHHHHHHHh
Q 006107 325 AS-------TMGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 325 ~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
.. .......+.+...+.++...++...
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 21 1123356889999999999988755
No 119
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0018 Score=65.96 Aligned_cols=177 Identities=10% Similarity=0.078 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc-----
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITS----- 260 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~----- 260 (661)
.+.|.+.+... .-...+.++|+.|+||+++|..+....-=.. ... ...+..-...+.+...-.+
T Consensus 11 ~~~l~~~~~~~---rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 11 YQQITQAFQQG---LGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHcC---CcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 34555555432 2345788999999999999988755321000 000 0001111111111111000
Q ss_pred --CCCCCCCHHHHHH---HHHh-hcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-CCCc
Q 006107 261 --AASDLNTLNEVQV---QLKK-AVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM-GPIE 332 (661)
Q Consensus 261 --~~~~~~~~~~l~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~-~~~~ 332 (661)
.......+++... .+.. -..+++-++|+|+++.......+.++..+-....++.+|++|.+. .+...+ ..-.
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0001112333222 2211 123566688999999998888888888887766777777777654 444332 2236
Q ss_pred eeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 333 HYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 333 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
.+.+.+++.++..+.+.+... . . ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~--~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS--A----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc--c----C---hHHHHHHHHHcCCCHHHH
Confidence 789999999999988876531 0 0 112456778899999644
No 120
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.68 E-value=0.00063 Score=71.90 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=88.0
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
++.|.|+-++||||+++.+..... +..++++..+......-+.+.+ ..+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~------~~~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL------EEIIYINFDDLRLDRIELLDLL-----------------RAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC------cceEEEEecchhcchhhHHHHH-----------------HHHHHhhccCC
Confidence 899999999999999977765421 1145554433211111111111 11111111277
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcc------cCCCceeecCCCChHhHHHHHHHhhcCCCC
Q 006107 284 FLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAST------MGPIEHYNLKSLLDDDCWSIFIKHALEGRD 357 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 357 (661)
.+|+||.|... ..|......+.+..+. +|++|+.+...... .|....+++-||+-.|...+-....
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999987 6899988888876666 88888887544332 2445678999999988866432000
Q ss_pred CCcchhhHHHHHHHHHHcCCChHHHHH
Q 006107 358 LSAHQISESFRKKVVGKCRGLPLAAKT 384 (661)
Q Consensus 358 ~~~~~~~~~~~~~I~~~~~G~PLai~~ 384 (661)
..... ...-+-.-.+||.|.++..
T Consensus 168 --~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 --EPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred --chhHH-HHHHHHHHHhCCCcHHHhC
Confidence 00011 1122333467888887754
No 121
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=2.2e-05 Score=58.86 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=42.3
Q ss_pred CcceeecCCCCCcccccccc--cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
.+|++|+|++|+|+.+|... .+.+|++|++++ ..+..+|.+ +..+++|+.+++..+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 36888888888888888644 788888888886 568888864 577777777766543
No 122
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=6.2e-05 Score=90.97 Aligned_cols=116 Identities=11% Similarity=-0.032 Sum_probs=67.8
Q ss_pred CCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCC-C---chhhHhhHhhh-hcCCcccCcC-CCCcceeecC
Q 006107 528 FERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPN-T---SYLRMEAWSGV-FGNISAVDET-LKKCLQFLRP 601 (661)
Q Consensus 528 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~-~---~~~~~~~l~~~-~~~l~~lP~~-~L~~LryL~L 601 (661)
+.+.|.+.+....... ++....+++|+.|.+.++..... . .....+.++.. ...++.+|+. .+.+|++|+|
T Consensus 588 p~~Lr~L~~~~~~l~~---lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L 664 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC---MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL 664 (1153)
T ss_pred CcccEEEEecCCCCCC---CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence 4556666665433222 23333456777777665432111 0 11112222221 1335567766 7888888888
Q ss_pred CCCC-cccccccc-cccccceeecccccccccCCcccccccccccccc
Q 006107 602 KYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDF 647 (661)
Q Consensus 602 ~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~ 647 (661)
++|. +..+|.+| +|.+|+.|++++|+.++.+|.++ ++++|+.+++
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 8775 77888888 88888888888888888888765 4444443333
No 123
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.002 Score=65.46 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=67.3
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDL 358 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 358 (661)
+..-++|+|+++.......+.++..+-...+++.+|++|.+ ..+...+ +.-..+.+.+++.+++.+.+.+.. .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~ 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----I 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----C
Confidence 45568999999999888889998888766677777766665 3444333 333678999999999998886531 1
Q ss_pred CcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 359 SAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 359 ~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
. ....++..++|.|+.+..+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 0 1246788999999977554
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0016 Score=66.18 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDL 358 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 358 (661)
+++-++|+|+++..+...-+.++..+-....++.+|++|.+ ..+...+ ..-..+.+.+++.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 55679999999998877778888877665667777777764 3343332 223668899999999988886531 1
Q ss_pred CcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 359 SAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 359 ~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
. ...+..++..++|.|+.+..+.
T Consensus 187 ~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225678999999998765443
No 125
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=0.00019 Score=71.57 Aligned_cols=102 Identities=24% Similarity=0.232 Sum_probs=58.6
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
.+.|+|.+|+|||+||..+++.... ....+++++ ..+++..+........ ...... +.+.+.+-.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 5789999999999999999997542 223456665 3445555554443211 112222 223333333
Q ss_pred EEEEEeCCCCCChhhHhh--hhccccc-CCCCcEEEEEeCC
Q 006107 284 FLLVLDDVRNEDYSLWVD--LKAPFLA-AAPNSKMIITTRH 321 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTTr~ 321 (661)
||||||+.......|.. +...+.. -..+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995443334433 3322221 1356679999874
No 126
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.0018 Score=68.29 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|.+..+++|.+.+... .+-..++-+.++|++|+|||+||+.+++.... .| +.+ ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f---i~i--~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF---IRV--VG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE---EEE--eh----
Confidence 45789988888888766321 11134567889999999999999999886321 22 112 11
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hh----hHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED----------YS----LWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~ 311 (661)
..+... ..+ .....+...+.......+.+|+||+++... .. .+..+...+.. ...
T Consensus 213 s~l~~k----~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEFVQK----YLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHHHH----hcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 110 011112222333334678999999987421 01 11222222221 234
Q ss_pred CcEEEEEeCChhhhcc--c---CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 312 NSKMIITTRHSDVAST--M---GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 312 gs~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
+..||.||........ . .-...+++...+.++..++|..+..... ...... ..++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 5678888875433221 1 1235688888888888888876643221 111112 245666676664
No 127
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.64 E-value=0.0012 Score=65.89 Aligned_cols=110 Identities=21% Similarity=0.222 Sum_probs=58.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH------------HHhccCCCCCCCHHHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL------------ESITSAASDLNTLNEV 271 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il------------~~l~~~~~~~~~~~~l 271 (661)
.+.|.|++|+|||+||+.+.+.. -...++++.....+..+++.... .......... ...-.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIV-RQNWV 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhccc-ceeec
Confidence 46689999999999999998631 11335566666555555543221 1000000000 00000
Q ss_pred HHHHHhhcCCceEEEEEeCCCCCChhhHhhhhccccc----------------CCCCcEEEEEeCC
Q 006107 272 QVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLA----------------AAPNSKMIITTRH 321 (661)
Q Consensus 272 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~----------------~~~gs~ilvTTr~ 321 (661)
...+..... +...|++|++...+...+..+...+.. ..++.+||+|+..
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 001111111 346899999998876665555554421 1135678888774
No 128
>CHL00176 ftsH cell division protein; Validated
Probab=97.63 E-value=0.001 Score=74.18 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHH---HhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDM---VNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~---L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.++.|.++.++++.+. +.... ....++-+.++|++|+|||+||+.+++...+ . |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---P-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C-----eeeccH----H
Confidence 4578887766655544 33221 1123456889999999999999999875321 1 222221 1
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhh----Hhhhhccccc--CCCC
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED----------YSL----WVDLKAPFLA--AAPN 312 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~g 312 (661)
++.. ...+ .....+...+.......+.+|+|||++... ... +..++..+.. ...+
T Consensus 251 ~f~~----~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVE----MFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHH----Hhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1111 0000 011223334445556788999999996531 112 2223222221 2345
Q ss_pred cEEEEEeCChhhhc-cc----CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC
Q 006107 313 SKMIITTRHSDVAS-TM----GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL 378 (661)
Q Consensus 313 s~ilvTTr~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 378 (661)
..||.||....... .+ .-...+.+...+.++-.+++..++..... . .......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S----PDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCCC
Confidence 56777776543322 11 12356888889999999999887643111 1 122346788888873
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.00038 Score=80.77 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=83.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEE-EEEEeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVK-AWVCVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~-~wv~v~~~~~~~~~~~ 252 (661)
.+++||+.+++++++.|.... ..-+.++|++|+|||++|+.+...... ........ ++++++. +.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~----~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC----cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh-
Confidence 468999999999999986532 224558999999999999988776321 00001222 2332221 10
Q ss_pred HHHHHhccCCCCCCCHHH-HHHHHHhhc-CCceEEEEEeCCCCCChh-------hHhhhhcccccCCCCcEEEEEeCChh
Q 006107 253 ALLESITSAASDLNTLNE-VQVQLKKAV-DGKRFLLVLDDVRNEDYS-------LWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~-l~~~l~~~l-~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
.+ .......+. +...+.+.- .+++.+|++|+++..... +-..++.+.... ...++|-+|..+.
T Consensus 247 ------ag-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e 318 (857)
T PRK10865 247 ------AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDE 318 (857)
T ss_pred ------hc-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHH
Confidence 00 000111222 222222211 256899999999764210 112233333322 2346666655544
Q ss_pred hhcc-------cCCCceeecCCCChHhHHHHHHHh
Q 006107 324 VAST-------MGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 324 v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
.... ......+.+...+.++...++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 3211 122345667777888888887654
No 130
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.61 E-value=1.7e-05 Score=91.31 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=55.8
Q ss_pred CcccCcC---CCCcceeecCCCCC-cccccccc-cccccceeecccccccccCCccccccccccccccc
Q 006107 585 ISAVDET---LKKCLQFLRPKYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFG 648 (661)
Q Consensus 585 l~~lP~~---~L~~LryL~L~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~ 648 (661)
+..+|.. .|++||+|||++|. +.+||++| +|-|||+|++++ +.+..||.++++|++|.++|+.
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccc
Confidence 4455553 79999999999876 99999999 999999999987 7899999999999999987775
No 131
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.58 E-value=0.00035 Score=77.25 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=40.7
Q ss_pred CcCccccchhhHHHHHHHHhcCCC-CCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSD-HANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.-.+++|-++.++++..++..... ....+++.|+|++|+||||+++.++...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999865321 1233579999999999999999998753
No 132
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.0007 Score=65.67 Aligned_cols=135 Identities=14% Similarity=0.213 Sum_probs=74.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE--e--CCC-----CCH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC--V--SDN-----FDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~--v--~~~-----~~~ 247 (661)
..+.+|......+..++... .++.++|++|+|||+||..+..+.-..+ .|+..+-.. + .+. -+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 34678888899999988542 3899999999999999998876532222 454433321 1 110 011
Q ss_pred H----HHHHHHHHHhccCCCCCCCHHHHHH----H----HHhhcCCceE---EEEEeCCCCCChhhHhhhhcccccCCCC
Q 006107 248 F----NILKALLESITSAASDLNTLNEVQV----Q----LKKAVDGKRF---LLVLDDVRNEDYSLWVDLKAPFLAAAPN 312 (661)
Q Consensus 248 ~----~~~~~il~~l~~~~~~~~~~~~l~~----~----l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~g 312 (661)
. ..+.-+...+..-. +....+.... . =-.+++|+.+ +||+|++.+.+......+. ...+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCC
Confidence 1 11222222221100 0001111100 0 0123455554 9999999998765444444 444679
Q ss_pred cEEEEEeCCh
Q 006107 313 SKMIITTRHS 322 (661)
Q Consensus 313 s~ilvTTr~~ 322 (661)
|++|+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999986543
No 133
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.0004 Score=61.76 Aligned_cols=88 Identities=22% Similarity=0.087 Sum_probs=46.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC-
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG- 281 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~- 281 (661)
..+.|+|++|+||||+++.++...... ...+++++.+........... ........ ...........+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 478899999999999999998874321 123555554443222211111 01111111 111112222233333333
Q ss_pred ceEEEEEeCCCCCC
Q 006107 282 KRFLLVLDDVRNED 295 (661)
Q Consensus 282 kr~LlVlDdv~~~~ 295 (661)
+..+|++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 34899999998864
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.57 E-value=0.00046 Score=74.30 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhccccccc--CCCCEEEEEEeCCCC
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD--SKFDVKAWVCVSDNF 245 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~v~~~~ 245 (661)
.++.|.+..+++|.+.+..+ ..-..++-+.++|++|+|||++|+.+++...... .......|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45778999999988876421 0112345688999999999999999998753211 01223445554432
Q ss_pred CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh-cCCceEEEEEeCCCCCCh-------hh-----Hhhhhccccc--CC
Q 006107 246 DVFNILKALLESITSAASDLNTLNEVQVQLKKA-VDGKRFLLVLDDVRNEDY-------SL-----WVDLKAPFLA--AA 310 (661)
Q Consensus 246 ~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~-------~~-----~~~l~~~l~~--~~ 310 (661)
+++.. ..+. .......+....+.. -.+++++|+||+++..-. .. ...++..+.. ..
T Consensus 261 ---eLl~k----yvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---ELLNK----YVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hhccc----ccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11110 0000 000111111222221 235789999999975310 01 1233333322 12
Q ss_pred CCcEEEEEeCChhhhc-c-c---CCCceeecCCCChHhHHHHHHHhh
Q 006107 311 PNSKMIITTRHSDVAS-T-M---GPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
.+..||.||....... . . .-...+++...+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445555665443221 1 1 123468999999999999999886
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.56 E-value=0.00081 Score=77.19 Aligned_cols=119 Identities=14% Similarity=0.203 Sum_probs=69.8
Q ss_pred CccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|-+..++.+.+.+... ..+....++.++|++|+|||+||+.+.... +...+.++.+.-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc---
Confidence 34789888888888887642 112234578899999999999999998753 2233555544321111
Q ss_pred HHHHHHhccCCC--CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhccccc
Q 006107 252 KALLESITSAAS--DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLA 308 (661)
Q Consensus 252 ~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (661)
.+...++.+.. +......+...++ ....-+++||+++..++..++.+...+..
T Consensus 525 -~~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11111222111 1111122222222 13345999999999888777777776643
No 136
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.53 E-value=0.0012 Score=60.58 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=76.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-----------------CCCCEEEEEEeCC
Q 006107 181 GREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-----------------SKFDVKAWVCVSD 243 (661)
Q Consensus 181 GR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~~f~~~~wv~v~~ 243 (661)
|-++..+.|.+.+... .-+..+.++|+.|+||+++|..+.+..--.. .......|+.-..
T Consensus 1 gq~~~~~~L~~~~~~~---~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG---RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp S-HHHHHHHHHHHHCT---C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred CcHHHHHHHHHHHHcC---CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 4456667777777543 2345688999999999999988865421111 0112222332221
Q ss_pred C---CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeC
Q 006107 244 N---FDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTR 320 (661)
Q Consensus 244 ~---~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr 320 (661)
. ...+++ +++...+.... ..++.=++|+||++......++.++..+-....++.+|++|.
T Consensus 78 ~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 78 KKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp SSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred ccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 1 122221 12222222111 124566899999999988899999998877778899988888
Q ss_pred Chh-hhcc-cCCCceeecCCC
Q 006107 321 HSD-VAST-MGPIEHYNLKSL 339 (661)
Q Consensus 321 ~~~-v~~~-~~~~~~~~l~~L 339 (661)
+.. +... ...-..+.+.++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE---
T ss_pred ChHHChHHHHhhceEEecCCC
Confidence 653 2222 122244555544
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.52 E-value=0.00062 Score=72.20 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|.+..+++|.+.+...- +-..++-+.++|++|+|||++|+.+++... . .| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~-~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--A-TF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--C-CE-----EEEecc---
Confidence 456899999988888764210 112345688999999999999999998632 1 33 222111
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------h---hhHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----------Y---SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~ 311 (661)
++.. ...+ .....+...+.....+.+.+|+||+++... . .....+...+.. ...
T Consensus 252 -eL~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 -ELIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hhhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1111 1100 011112222222334678899999975321 0 011112222211 234
Q ss_pred CcEEEEEeCChhhhcc-c----CCCceeecCCCChHhHHHHHHHhh
Q 006107 312 NSKMIITTRHSDVAST-M----GPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 312 gs~ilvTTr~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
+..||.||........ + .....+++...+.++..++|..+.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 5678888875433322 1 123568899999999999998775
No 138
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.51 E-value=2.2e-05 Score=78.67 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=55.7
Q ss_pred hHhhhhcCCcccCcC---CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCccccccccccc
Q 006107 577 AWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQL 644 (661)
Q Consensus 577 ~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~ 644 (661)
-++..-..++.+|.. +|.+|..|||+.++++++|..| .|++|+.||+++ ..+..||.++++| .|++
T Consensus 232 Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 232 ELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKF 301 (565)
T ss_pred HHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeee
Confidence 344333456677877 9999999999999999999999 999999999998 7899999999987 4543
No 139
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.0019 Score=70.75 Aligned_cols=184 Identities=17% Similarity=0.156 Sum_probs=96.3
Q ss_pred cCccccchhhHHHHHHHHh---cC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVN---TS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~---~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|-+..++++.+++. .. .+...++-+.++|++|+|||+||+.+++...+ . ++.++.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~---- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISG---- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccH----
Confidence 3467888877666555443 11 01223445889999999999999999876332 1 222221
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhHhh----hhcccc--cCCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED----------YSLWVD----LKAPFL--AAAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 311 (661)
.++.. ...+ .....+...+.......+.+|+|||++... ...+.. ++..+. ....
T Consensus 122 ~~~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11111 1100 111223333344445667899999996531 111222 222221 1223
Q ss_pred CcEEEEEeCChhhhc-----ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh-HHHHHH
Q 006107 312 NSKMIITTRHSDVAS-----TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP-LAAKTL 385 (661)
Q Consensus 312 gs~ilvTTr~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~ 385 (661)
+..||.||....... ...-...+++...+.++-.++|..+....... .. .....+++.+.|.- --|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc----hhHHHHHHhCCCCCHHHHHHH
Confidence 455666666532111 11223568889889888888888775332211 11 11347888888743 334333
No 140
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=9.2e-05 Score=55.47 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=37.4
Q ss_pred CCcccCcC---CCCcceeecCCCCCccccccc-c-cccccceeecccc
Q 006107 584 NISAVDET---LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKH 626 (661)
Q Consensus 584 ~l~~lP~~---~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c 626 (661)
.++.+|.. .+.+|++|+|++|.|+.+|+. + .|.+|++|++++|
T Consensus 12 ~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 12 KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45567765 899999999999999999975 5 9999999999985
No 141
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0037 Score=64.38 Aligned_cols=95 Identities=13% Similarity=0.059 Sum_probs=67.2
Q ss_pred CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCC
Q 006107 280 DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRD 357 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 357 (661)
.+++-++|+|+++......-+.++..+-....++.+|++|.+ ..+...+ +.-..+.+.+++.+++.+.+.... +
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--- 181 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--- 181 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---
Confidence 356779999999999888888888888766667777777665 3444332 233568899999999988886532 1
Q ss_pred CCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 358 LSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 358 ~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
. + .+.+..++..++|.|..+.
T Consensus 182 ~--~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 M--S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C--C---HHHHHHHHHHcCCCHHHHH
Confidence 1 1 2235678999999997543
No 142
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0016 Score=67.12 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=90.2
Q ss_pred ccc-chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 179 VFG-REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 179 ~vG-R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
++| -+.-++.+.+.+... .-+....++|+.|+||||+|+.+.+..--.. ..... .+..-...+.+...
T Consensus 7 i~~~q~~~~~~L~~~~~~~---~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~-~~~~~-------~cg~C~~c~~~~~~ 75 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN---RLSHAYLFEGAKGTGKKATALWLAKSLFCLE-RNGVE-------PCGTCTNCKRIDSG 75 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC---CCCceEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCC-------CCCcCHHHHHHhcC
Confidence 456 556667777776542 3346778999999999999988855421000 00000 00000111111100
Q ss_pred hccC------CCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhc
Q 006107 258 ITSA------ASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVAS 326 (661)
Q Consensus 258 l~~~------~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~ 326 (661)
-... .......++....+... ..+.+-++|+|+++..+....+.++..+-....++.+|++|.+. .+..
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 0000 00111222222222111 23455689999999888777888888887666777777777653 3332
Q ss_pred cc-CCCceeecCCCChHhHHHHHHHh
Q 006107 327 TM-GPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 327 ~~-~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
.+ .....+++.+++.++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 23367999999999998888653
No 143
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00035 Score=77.75 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=77.8
Q ss_pred CccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCC---CEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKF---DVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~ 248 (661)
..++|-+..+..+.+.+... ....+..+....||.|||||.||+.+... -| +..+-+ ++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~------Lfg~e~aliR~------DMS 558 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA------LFGDEQALIRI------DMS 558 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH------hcCCCccceee------chH
Confidence 45899999999999888652 22345667888999999999999998764 34 233333 333
Q ss_pred HHHH-HHHHHhccCCCCCCCHHHHHHHHHhhcCCceE-EEEEeCCCCCChhhHhhhhccccc
Q 006107 249 NILK-ALLESITSAASDLNTLNEVQVQLKKAVDGKRF-LLVLDDVRNEDYSLWVDLKAPFLA 308 (661)
Q Consensus 249 ~~~~-~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 308 (661)
+... .-.+.+-+.+++--..++ ...|-+..+.++| +|.||+++..++...+-++..|..
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 3322 223344444443222222 3345555667777 888999999988888888777754
No 144
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.43 E-value=0.00068 Score=68.82 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 006107 181 GREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITS 260 (661)
Q Consensus 181 GR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 260 (661)
+|........+++..-..+...+-+.|+|+.|+|||.||..+++....+ .+ .+.++++ .+++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC-CEEEEEH------HHHHHHHHHHHhc
Confidence 4555555555666432222233568899999999999999999886422 23 3455544 3455555544421
Q ss_pred CCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhh--hhccccc-C-CCCcEEEEEeC
Q 006107 261 AASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVD--LKAPFLA-A-APNSKMIITTR 320 (661)
Q Consensus 261 ~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~ilvTTr 320 (661)
.........+ .+-=||||||+-......|.. +...+.. . ..+..+|+||.
T Consensus 206 -----~~~~~~l~~l-----~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -----GSVKEKIDAV-----KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -----CcHHHHHHHh-----cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1222222222 234599999998766566754 5444432 2 34667888886
No 145
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.42 E-value=0.0005 Score=72.72 Aligned_cols=153 Identities=12% Similarity=0.176 Sum_probs=82.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHH-H
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKAL-L 255 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i-l 255 (661)
.++||++.++.+...+.... -|.|.|++|+|||+||+.+........ .|... .+ .+ .+.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~------hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~---~~--~fttp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE------SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYL---MT--RFSTPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC------CEEEECCCChhHHHHHHHHHHHhcccC-cceee---ee--eecCcHHhcCcHHH
Confidence 48999999999998887643 578999999999999999987533222 23211 11 11 122322211 1
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC---------CCCcEEEEEeCChhhhc
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA---------APNSKMIITTRHSDVAS 326 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~ilvTTr~~~v~~ 326 (661)
..... ..... ......+. .--++++|+++.........++..+... .-..++++++.++ ...
T Consensus 89 ~~~~~----~g~f~---r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE 159 (498)
T PRK13531 89 QALKD----EGRYQ---RLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPE 159 (498)
T ss_pred hhhhh----cCchh---hhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-Ccc
Confidence 11100 00000 00111111 1228999999988776666666655211 1123566666553 221
Q ss_pred -------ccCC-CceeecCCCChH-hHHHHHHHh
Q 006107 327 -------TMGP-IEHYNLKSLLDD-DCWSIFIKH 351 (661)
Q Consensus 327 -------~~~~-~~~~~l~~L~~~-e~~~Lf~~~ 351 (661)
.... .-.+.+.+++.+ +-.+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 1111 135778888754 446777653
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.42 E-value=0.0012 Score=76.67 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=75.6
Q ss_pred CccccchhhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|.+..++.+...+.... .+....++.++|++|+|||+||+.+.+..-- .....+.++.+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SDDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CCCcEEEEEhHHhhh-h---
Confidence 357899999999888886421 1223357889999999999999999865321 112234444432111 1
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHhhcC-CceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEe
Q 006107 252 KALLESITSAASDLNTLNEVQVQLKKAVD-GKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITT 319 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTT 319 (661)
.....+.+..+.....+. ...+.+.+. ...-+|+|||+...+...+..+...+..+ -.++.||+||
T Consensus 641 -~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 641 -HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred -hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 112222222211111111 111222222 22359999999988877887777665432 1223367777
Q ss_pred CC
Q 006107 320 RH 321 (661)
Q Consensus 320 r~ 321 (661)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 65
No 147
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.41 E-value=2.7e-05 Score=78.08 Aligned_cols=108 Identities=10% Similarity=-0.024 Sum_probs=74.9
Q ss_pred ccCCCCceEEeeccccC-CCCCch---hhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCccccccc-c-ccccccee
Q 006107 550 FYEIELLRTFLPFCIRG-GPNTSY---LRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMA 621 (661)
Q Consensus 550 ~~~~~~LrsL~~~~~~~-~~~~~~---~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L 621 (661)
++.+++|..|.+.+... ..|... ...+.++.....|+.+|+. .+..|..+-.+++.|.++|.+ + ++.||.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 34555555555544321 111111 1223344445677888888 777788888888889999998 8 99999999
Q ss_pred ecccccccccCCccccccccccccccccccccccccc
Q 006107 622 IWCKHTYLVTGSVNLNFTQFLQLSDFGTHIGARKSKE 658 (661)
Q Consensus 622 ~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~~~~~~~e 658 (661)
|+.+ ..++.+|+.+|+|++|+.+++..+-..+..+.
T Consensus 511 DL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~ 546 (565)
T KOG0472|consen 511 DLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQPRHQ 546 (565)
T ss_pred ccCC-CchhhCChhhccccceeEEEecCCccCCCHHH
Confidence 9987 78999999999999999888876655554443
No 148
>PRK08118 topology modulation protein; Reviewed
Probab=97.40 E-value=7e-05 Score=69.06 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=28.8
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEE
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAW 238 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 238 (661)
-|.|+|++|+||||||+.+++.......+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999887655336777775
No 149
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.39 E-value=0.015 Score=67.24 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=84.1
Q ss_pred CccccchhhHHHHHHHHhcC--CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS--SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.+++|.+.-+++|.+++... ......+++.++|++|+|||++|+.+.+.... .| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~---~~---~~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR---KF---VRFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC---Ce---EEEeCCCcccHHHHcCC-
Confidence 45889999999988876431 11122347899999999999999999886431 22 12233332233222110
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhh----Hhhhhcccc--------cC-------CCCcEE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSL----WVDLKAPFL--------AA-------APNSKM 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~--------~~-------~~gs~i 315 (661)
. ..........+...+..... ++-+++||+++...... ...+...+. +. ..+..+
T Consensus 393 ----~-~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 393 ----R-RTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ----C-CceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 00001111223333333322 33478999997753210 112222111 11 022334
Q ss_pred EEEeCChhh-h-cccCCCceeecCCCChHhHHHHHHHhh
Q 006107 316 IITTRHSDV-A-STMGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 316 lvTTr~~~v-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
|.||..... . ........+++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 445543211 1 111233578999999998888887654
No 150
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0077 Score=61.88 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDL 358 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 358 (661)
++.-++|+|+++......++.++..+-...+++.+|++|.+ ..+...+ +.-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 45568899999999988999999888776677766665555 4444332 233678999999999998887641 1
Q ss_pred CcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 359 SAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 359 ~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
. + ...++..++|.|+.+..+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999865444
No 151
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.36 E-value=0.00015 Score=86.90 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=37.2
Q ss_pred ccCcC--CCCcceeecCCCCCcc-cccccc-cccccceeecccccccccCCccccccccccccccc
Q 006107 587 AVDET--LKKCLQFLRPKYTSER-EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFG 648 (661)
Q Consensus 587 ~lP~~--~L~~LryL~L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~ 648 (661)
.+|.. +|.+|++|+|++|.+. .+|.++ +|.+|++|++++|.-...+|..++++++|+.+++.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 45554 6666666666666643 466666 66666666666644333566666666666655554
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0011 Score=77.40 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred CccccchhhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|.+..++.+...+.... ......++.++|++|+|||++|+.+.....- .-...+.++.+.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccch--
Confidence 458999999999999886531 1223457889999999999999999865221 112334444443222111
Q ss_pred HHHHHHhccCCCCC---CCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhccccc
Q 006107 252 KALLESITSAASDL---NTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLA 308 (661)
Q Consensus 252 ~~il~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (661)
...+.+..++. .....+...++. ....+|+||+++..++..+..+...+..
T Consensus 640 ---~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 640 ---VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred ---HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 11121211111 111222223322 2334899999999988888888776643
No 153
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0033 Score=66.91 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=97.6
Q ss_pred CccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.++=|.+..+.+|.+++..-. +-..++-|.++||+|+|||.||+.+.+...+. |+.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--------f~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--------FLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--------eEeecch----
Confidence 456688888888888775511 11345668899999999999999999886542 2333322
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhcccc---cC-CCCc
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFL---AA-APNS 313 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~-~~gs 313 (661)
+++..+.+ ...+.+.+.+.+.....++++++|+++-..+ ....+++..+. .. ..|-
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 22222222 2333444445555667899999999976431 01122332222 11 1233
Q ss_pred EEEE---EeCChhhhccc---CC-CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC
Q 006107 314 KMII---TTRHSDVASTM---GP-IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL 378 (661)
Q Consensus 314 ~ilv---TTr~~~v~~~~---~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 378 (661)
.||| |+|-+.+-..+ +. .+.|.|.--++.+-.+++...+-+-.-.. .-. .++|++.+-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFD----FKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcC----HHHHHhcCCCc
Confidence 3443 55554433222 22 25577777777666666665543222211 111 25677777665
No 154
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0059 Score=63.92 Aligned_cols=149 Identities=16% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
.++..+.+.|++|+|||+||..+... ..|..+--++-..-....+ ..............-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhh
Confidence 45667889999999999999999865 3676543332111100000 001112223334444
Q ss_pred CCceEEEEEeCCCCCChhhHhh------------hhccc---ccCCCCcEEEEEeCChhhhcccCCC----ceeecCCCC
Q 006107 280 DGKRFLLVLDDVRNEDYSLWVD------------LKAPF---LAAAPNSKMIITTRHSDVASTMGPI----EHYNLKSLL 340 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~------------l~~~l---~~~~~gs~ilvTTr~~~v~~~~~~~----~~~~l~~L~ 340 (661)
+..--.||+||++.. .+|.. +.-.+ ++.++.--|+-||....+.+.|+-. ..+.+..++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 566679999999753 22222 22222 3333333455577777888877533 568888888
Q ss_pred h-HhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHc
Q 006107 341 D-DDCWSIFIKHALEGRDLSAHQISESFRKKVVGKC 375 (661)
Q Consensus 341 ~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 375 (661)
. ++..+.++..- ...+...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 66666666542 112233445556666655
No 155
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.28 E-value=0.0035 Score=61.27 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=57.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.++|.+|+|||+||..+++..... -..+++++ ..+++..+-..... .....+... +.+. +
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~ 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIIT------VADIMSAMKDTFSN---SETSEEQLL----NDLS-N 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE------HHHHHHHHHHHHhh---ccccHHHHH----HHhc-c
Confidence 468899999999999999999875422 23455554 34454444433321 111222222 2233 3
Q ss_pred eEEEEEeCCCCCChhhHhh-hhccccc--CCCCcEEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLWVD-LKAPFLA--AAPNSKMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~-l~~~l~~--~~~gs~ilvTTr~ 321 (661)
.=+|||||+.......|.. +...+.+ -...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488999997765555654 2222222 1234567777763
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.0009 Score=77.51 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=76.0
Q ss_pred CccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|.+..++.+.+.+... .......++.++|++|+|||.||+.+....- + .....+-++++.-..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~-~~~~~~~~dmse~~~----- 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--G-GEQNLITINMSEFQE----- 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--C-CCcceEEEeHHHhhh-----
Confidence 45899999999999888542 1223456789999999999999998866521 1 112222222221110
Q ss_pred HHHHHHhccCCCCC---CCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEE
Q 006107 252 KALLESITSAASDL---NTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMII 317 (661)
Q Consensus 252 ~~il~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilv 317 (661)
..-...+.+..+.. .....+...+++ ...-+|+||+++..++..++.+...+..+. .++-||+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 01111222221111 111223333332 445699999999888777777776664432 3455666
Q ss_pred EeCC
Q 006107 318 TTRH 321 (661)
Q Consensus 318 TTr~ 321 (661)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7653
No 157
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.28 E-value=0.0019 Score=73.98 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=87.4
Q ss_pred CccccchhhHHHHHHHHhcCC--CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS--DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.+.+|.++-+++|+++|.... ......++.++|++|+||||+++.++.... . .| +-++.+...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~-~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--R-KY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--C-CE---EEEEcCCCCCHHHhccch
Confidence 458999999999998886411 112334789999999999999999986532 1 22 223333333332222111
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhh----HhhhhcccccC---------------CCCcEE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSL----WVDLKAPFLAA---------------APNSKM 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 315 (661)
....+. ....+...+...- ...-+++||+++...... ...+...+.+. -.+..+
T Consensus 396 ~~~~g~------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGS------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCC------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 111110 1112233333322 233478899997654221 12333322211 123334
Q ss_pred EEEeCChhhhcc-cCCCceeecCCCChHhHHHHHHHhh
Q 006107 316 IITTRHSDVAST-MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 316 lvTTr~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
|.|+....+... ......+.+.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445543222111 1233678899999999988887765
No 158
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.00073 Score=67.05 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=54.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
-+.|+|++|+|||.||..+.+...- ....++|++ ..+++..+..... ..........+. +.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~l~-----~~ 168 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAKLD-----KF 168 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHHHh-----cC
Confidence 4889999999999999999876432 222445554 3445555433211 122222222221 33
Q ss_pred EEEEEeCCCCCChhhH-h-hhhcccccCCCCcEEEEEeCC
Q 006107 284 FLLVLDDVRNEDYSLW-V-DLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~-~-~l~~~l~~~~~gs~ilvTTr~ 321 (661)
-||||||+.......| . .+...+...-.+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4999999965433222 2 233333222123468888874
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0017 Score=67.34 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=84.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc------------------CCCCEEEEE
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD------------------SKFDVKAWV 239 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 239 (661)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+..--.. +.+.....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~--~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG--RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcC--CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 45677788888888886532 2334688999999999999998876532110 011233334
Q ss_pred EeCCCCC---HHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEE
Q 006107 240 CVSDNFD---VFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMI 316 (661)
Q Consensus 240 ~v~~~~~---~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 316 (661)
+-+.... ..+..+++.+....... .++.-++++|+++......-+.++..+-.....+.+|
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 3333322 22333333332222110 3567799999999887766777777776666788888
Q ss_pred EEeCCh-hhhcccC-CCceeecCC
Q 006107 317 ITTRHS-DVASTMG-PIEHYNLKS 338 (661)
Q Consensus 317 vTTr~~-~v~~~~~-~~~~~~l~~ 338 (661)
++|... .+...+. ....+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 888732 2322221 124455665
No 160
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.00044 Score=66.69 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=27.9
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV 241 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 241 (661)
.++|+|+.|+|||||+..+..... +.|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~---~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR---HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc---ccCCEEEEEec
Confidence 577999999999999999987633 37877776654
No 161
>PRK07261 topology modulation protein; Provisional
Probab=97.26 E-value=0.00056 Score=63.37 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=25.1
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEE
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAW 238 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 238 (661)
.|.|+|++|+||||||+.+........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999997654332223444444
No 162
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.00048 Score=67.44 Aligned_cols=101 Identities=23% Similarity=0.156 Sum_probs=56.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|+|++|+|||+||..+++.... ....++++++. +++..+-..... ....... +. .+ .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l~-~l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---LQ-EL-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---HH-Hh-cC
Confidence 46889999999999999999987542 22334666543 444444433321 1111222 22 22 34
Q ss_pred eEEEEEeCCCCCChhhHhh--hhcccccC-CCCcEEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLWVD--LKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTr~ 321 (661)
--||||||+.......|.. +...+... ...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995543334433 33232221 234457788763
No 163
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.25 E-value=0.0025 Score=63.07 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=93.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH-HHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF-NILKALLE 256 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~il~ 256 (661)
.++|-.++...+-.++.+..-.+.-.-+.|+||.|.|||+|......+. +. .-+..+-|.+.+....+ -.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~-~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QE-NGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--Hh-cCCeEEEEEECccchhhHHHHHHHHH
Confidence 5789999999998888763222233457799999999999998887772 22 33445555665554432 23455555
Q ss_pred HhccC----CCCCCCHHHHHHHHHhhcC------CceEEEEEeCCCCCChhhHhhhhcccc-----cCCCCcEEEEEeCC
Q 006107 257 SITSA----ASDLNTLNEVQVQLKKAVD------GKRFLLVLDDVRNEDYSLWVDLKAPFL-----AAAPNSKMIITTRH 321 (661)
Q Consensus 257 ~l~~~----~~~~~~~~~l~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~~~l~-----~~~~gs~ilvTTr~ 321 (661)
++... .....+..+....+-..|+ +-++++|+|.++-.....-..+.-.+. ...|=+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 54322 1122223333333333332 346888998886543222112221111 12344566689885
Q ss_pred hhh-------hcccCCCceeecCCCChHhHHHHHHHhh
Q 006107 322 SDV-------ASTMGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 322 ~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
... -....-..++-+..++-++...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 422 2222222344455666666666666554
No 164
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.028 Score=58.45 Aligned_cols=206 Identities=13% Similarity=0.160 Sum_probs=122.0
Q ss_pred chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHH-HHHhcccccccCCCCEEEEEEeCCC---CCHHHHHHHHHHH
Q 006107 182 REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLA-REVYNDKAVADSKFDVKAWVCVSDN---FDVFNILKALLES 257 (661)
Q Consensus 182 R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~il~~ 257 (661)
|.+.+++|..||.... -.+|.|.||-|+||+.|+ .++.++.+ .++.+++.+- -+-..++..++.+
T Consensus 1 R~e~~~~L~~wL~e~~----~TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP----NTFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcCC----CeEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHHHh
Confidence 5677899999997653 248999999999999999 77766522 2555554321 2233444444444
Q ss_pred hccC-----------------------CCC-CCCHHH-HH-------HHHHh-------------------hc---CCce
Q 006107 258 ITSA-----------------------ASD-LNTLNE-VQ-------VQLKK-------------------AV---DGKR 283 (661)
Q Consensus 258 l~~~-----------------------~~~-~~~~~~-l~-------~~l~~-------------------~l---~~kr 283 (661)
++-. ..+ ..+.+. +. ..|++ +| ..++
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 4311 111 112211 11 11111 01 1225
Q ss_pred EEEEEeCCCCCCh---------hhHhhhhcccccCCCCcEEEEEeCChhhhcc----c--CCCceeecCCCChHhHHHHH
Q 006107 284 FLLVLDDVRNEDY---------SLWVDLKAPFLAAAPNSKMIITTRHSDVAST----M--GPIEHYNLKSLLDDDCWSIF 348 (661)
Q Consensus 284 ~LlVlDdv~~~~~---------~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~----~--~~~~~~~l~~L~~~e~~~Lf 348 (661)
-+||+||+..... .+|...+. .++=.+||++|-+...... + .....+.|.-.+.+.|..+.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 6999999865321 23433221 2345678888876544332 2 23367889999999999999
Q ss_pred HHhhcCCCCC------------Ccc----hhhHHHHHHHHHHcCCChHHHHHHHHHhccC--CHHHHHHHHc
Q 006107 349 IKHALEGRDL------------SAH----QISESFRKKVVGKCRGLPLAAKTLEGLLRTT--RHAAWDDILD 402 (661)
Q Consensus 349 ~~~~~~~~~~------------~~~----~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~--~~~~w~~~~~ 402 (661)
..+....... ... .....-....+..+||-=.-+..+++.++.. +.+....+..
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9887443110 000 1233344678889999999999999999987 4444555544
No 165
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.18 E-value=0.016 Score=59.91 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccc
Q 006107 183 EEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVA 229 (661)
Q Consensus 183 ~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 229 (661)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+...-.
T Consensus 2 ~~~a~~la~~I~~~~-~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD-SDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 334566777776543 2456799999999999999999998775533
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.17 E-value=0.0007 Score=63.02 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=52.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
.-+.|+|++|+|||.||..+.+....+ .+ .+.|+++ .+++..+ .... .....+.....+. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~--g~-~v~f~~~------~~L~~~l----~~~~-~~~~~~~~~~~l~-----~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK--GY-SVLFITA------SDLLDEL----KQSR-SDGSYEELLKRLK-----R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEH------HHHHHHH----HCCH-CCTTHCHHHHHHH-----T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC--Cc-ceeEeec------Cceeccc----cccc-cccchhhhcCccc-----c
Confidence 458899999999999999998764432 22 4566643 3444443 2221 1222333333332 2
Q ss_pred eEEEEEeCCCCCChhhHhh--hhcccccCCCCcEEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLWVD--LKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~ilvTTr~ 321 (661)
-=||||||+-......|.. +...+...-....+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 2488899997765444433 22222111112368888874
No 167
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.16 E-value=0.0017 Score=61.33 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=64.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC----CCC-----CHH--
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS----DNF-----DVF-- 248 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~----~~~-----~~~-- 248 (661)
..+..+....++.|... .++.+.|++|.|||.||....-+.-..+ .|+..+++.-. +.. +..
T Consensus 3 ~p~~~~Q~~~~~al~~~------~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNN------DLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhC------CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34566777778877632 3899999999999999988776543334 88887776421 110 000
Q ss_pred --HHHHHHHHHhccCCCCCCCHHHHHHHH------HhhcCCc---eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE
Q 006107 249 --NILKALLESITSAASDLNTLNEVQVQL------KKAVDGK---RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 249 --~~~~~il~~l~~~~~~~~~~~~l~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
-.+.-+...+..-. .....+.+...- -.+++|+ ..++|+|++.+....++..+. ...+.||++|+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEEE
Confidence 01111111111110 112222222110 1233444 469999999998776666554 44567999999
Q ss_pred EeCC
Q 006107 318 TTRH 321 (661)
Q Consensus 318 TTr~ 321 (661)
+--.
T Consensus 152 ~GD~ 155 (205)
T PF02562_consen 152 TGDP 155 (205)
T ss_dssp EE--
T ss_pred ecCc
Confidence 8654
No 168
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.0012 Score=62.29 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=68.3
Q ss_pred CCCCcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 172 SVPTEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 172 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
.+++-..++|-+...+.|++--..-..+....-|.+||.-|.|||+|++.+.+...-++ -. -|.|..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lr--LVEV~k-------- 121 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG---LR--LVEVDK-------- 121 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC---Ce--EEEEcH--------
Confidence 33445678999999888887654422223334578999999999999999988754332 11 222222
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc
Q 006107 252 KALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA 308 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~ 308 (661)
.+..++..+...|+. ..+||+|..||+.-+ +...+..+...+..
T Consensus 122 -----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 -----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 112222333333332 368999999998543 33556666666644
No 169
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.13 E-value=0.00032 Score=62.57 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=63.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
||....++++.+.+..-.. ....|.|+|.+|+||+++|+.++.........|... +...
T Consensus 1 vG~S~~~~~l~~~l~~~a~--~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~---------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS---------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC----------------
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh----------------
Confidence 5777778888877765321 123578999999999999998887643221122110 0000
Q ss_pred cCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-CCCcEEEEEeCC
Q 006107 260 SAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 260 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTr~ 321 (661)
.+ .+.+... +.--|+|+|++..+......+...+... ....|+|.||..
T Consensus 60 ------~~----~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 ------LP----AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ------TC----HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ------Cc----HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 1111111 3346889999998776666676666543 567899999984
No 170
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00086 Score=66.14 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=51.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
.-+.|+|++|+|||+||..+.+..... .+ .+.|+ +..+++..+..... ..... ..+... .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~--g~-~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA--GH-RVLFA------TAAQWVARLAAAHH-----AGRLQ---AELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC--CC-chhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHHh--cc
Confidence 357899999999999999997764322 22 23332 33344444433211 11111 222222 23
Q ss_pred eEEEEEeCCCCCChhhH-hh-hhcccccC-CCCcEEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLW-VD-LKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~-~~-l~~~l~~~-~~gs~ilvTTr~ 321 (661)
.-||||||+.......+ .. +...+... ..+ .+|+||..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCC
Confidence 45899999976432222 22 22222211 223 48888874
No 171
>PRK04296 thymidine kinase; Provisional
Probab=97.13 E-value=0.0011 Score=62.58 Aligned_cols=113 Identities=12% Similarity=-0.031 Sum_probs=63.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCC--CCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASD--LNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~~l~ 280 (661)
.++.|+|+.|.||||++..+..+... +...++.+. ..++.......+++.++..... .....++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 47889999999999999888776532 222333332 1112222233344444322111 2234445555544 33
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
++.-+||+|.+...+..+..++...+. ..|..|++|.+...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 445599999997654332333333332 36889999988643
No 172
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0043 Score=63.72 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=65.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCE-EEEEEeCC-CCCHHHHHHHHHHHhccCC
Q 006107 185 DKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDV-KAWVCVSD-NFDVFNILKALLESITSAA 262 (661)
Q Consensus 185 e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~-~~~~~~~~~~il~~l~~~~ 262 (661)
-..++++.+..-..+ .-+.|+|++|+|||||++.+.+..... +-+. ++|+.+.+ ...+.++++.+...+....
T Consensus 119 ~~~RvID~l~PiGkG---QR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIGKG---QRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecCCC---ceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 344577777653322 246899999999999999988764321 3344 46767665 4577888888888776544
Q ss_pred CCCCCHHH-----HHHHHHhhc--CCceEEEEEeCCCC
Q 006107 263 SDLNTLNE-----VQVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 263 ~~~~~~~~-----l~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
.+...... ....+.+++ .+++++||+|++..
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 33222221 111112222 58999999999953
No 173
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0023 Score=68.57 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
++++|-+.-...|...+.... -.......|+-|+||||+|+.+....--. -| ....++..-...+.|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r---i~hAYlfsG~RGvGKTt~Ari~AkalNC~-------~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR---IAHAYLFSGPRGVGKTTIARILAKALNCE-------NG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc---chhhhhhcCCCCcCchhHHHHHHHHhcCC-------CC-CCCCcchhhhhhHhhhc
Confidence 457999999999999887643 23456789999999999999886532100 00 11122222223333322
Q ss_pred Hhcc--------CCCCCCCHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhh-
Q 006107 257 SITS--------AASDLNTLNEVQVQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVA- 325 (661)
Q Consensus 257 ~l~~--------~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~- 325 (661)
.-.. +....++..++.+.+.-. ..++-=+.|+|+|+-.....|+.++..+-........|+.|.+. .+.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2000 001112222222222111 23555689999999888889999998887655666766666553 332
Q ss_pred cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 326 STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 326 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
........+.++.++.++-...+...+-...-.. ..+....|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCChh
Confidence 2234447799999999988888877764333222 23445677777777544
No 174
>PRK09183 transposase/IS protein; Provisional
Probab=97.10 E-value=0.0021 Score=63.81 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=51.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
.+.|+|++|+|||+||..+.+..... .+ .+.+++ ..++...+...... .. ....+.+.+ .+.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~--G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRA--GI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc--CC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 57799999999999999997653322 22 333443 23343333222111 11 112222222 344
Q ss_pred EEEEEeCCCCCChhhHh--hhhcccccC-CCCcEEEEEeCC
Q 006107 284 FLLVLDDVRNEDYSLWV--DLKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTr~ 321 (661)
-++|+||+.......+. .+...+... ..+ .+|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 59999999754322222 233322221 234 47888874
No 175
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.10 E-value=0.0022 Score=59.04 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=67.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
++|.+..+.++.+.+..-...+ ..|.|+|..|+||+.+|+.+.+...... ..-+-|+++. .+.+.+-..++-..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~--~pVlI~GE~GtGK~~lA~~IH~~s~r~~---~pfi~vnc~~-~~~~~~e~~LFG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD--LPVLITGETGTGKELLARAIHNNSPRKN---GPFISVNCAA-LPEELLESELFGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST--S-EEEECSTTSSHHHHHHHHHHCSTTTT---S-EEEEETTT-S-HHHHHHHHHEBC
T ss_pred CEeCCHHHHHHHHHHHHHhCCC--CCEEEEcCCCCcHHHHHHHHHHhhhccc---CCeEEEehhh-hhcchhhhhhhccc
Confidence 4788888888888876643222 3567999999999999999988633221 1223344442 23333322322111
Q ss_pred ccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeCCh
Q 006107 259 TSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTRHS 322 (661)
Q Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr~~ 322 (661)
.....+... .....+...-. =-|+||+++......-..+...+..+ ....|||.||..+
T Consensus 75 ~~~~~~~~~--~~~G~l~~A~~---GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 75 KGAFTGARS--DKKGLLEQANG---GTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSSSTTTSS--EBEHHHHHTTT---SEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccc--ccCCceeeccc---eEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 110001110 00122322222 26899999988765555555544321 1256888888853
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.09 E-value=0.00022 Score=63.65 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=49.3
Q ss_pred EEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHhhcCCce
Q 006107 205 IPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-DLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~~kr 283 (661)
|.|+|++|+|||+||+.+++... ....-+.++...+..+++...--. ..... ....+. ..+ .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~---~a~-----~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLV---RAM-----RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCC---TTH-----HEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec-cccccccccccc---ccc-----cce
Confidence 67999999999999999987531 234456777777777665432211 00000 000000 000 178
Q ss_pred EEEEEeCCCCCChhhHhhhhccc
Q 006107 284 FLLVLDDVRNEDYSLWVDLKAPF 306 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l 306 (661)
.++|||++...+...+..+...+
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHH
T ss_pred eEEEECCcccCCHHHHHHHHHHH
Confidence 99999999877655555554443
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.09 E-value=0.0023 Score=74.44 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=69.2
Q ss_pred CccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|-+..++.|...+... ..+.....+.++|++|+|||+||+.+.+..-- .-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccH-
Confidence 45889999999998887531 11233456778999999999999998764210 1122334444332111111
Q ss_pred HHHHHHhccCCC--CCCCHHHHHHHHHhhcCCce-EEEEEeCCCCCChhhHhhhhccccc
Q 006107 252 KALLESITSAAS--DLNTLNEVQVQLKKAVDGKR-FLLVLDDVRNEDYSLWVDLKAPFLA 308 (661)
Q Consensus 252 ~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (661)
...++.+.. +......+ .+.+..++ .+++||+++..++..++.+...+..
T Consensus 585 ---~~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ---HHhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 111121111 11111222 33333344 5899999999888778877776644
No 178
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.09 E-value=0.0035 Score=57.05 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=71.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE---------------------eCCCC----------------
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC---------------------VSDNF---------------- 245 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------v~~~~---------------- 245 (661)
..+.|+|++|.|||||.+.+|...+... ..+|++ |=+++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4899999999999999999998765322 455553 11111
Q ss_pred -----CHHHHHHHHHH---HhccCC------CCCCCHHHHHHHHHhhcCCceEEEEEeCCC-CCCh-hhHhhhhcccc-c
Q 006107 246 -----DVFNILKALLE---SITSAA------SDLNTLNEVQVQLKKAVDGKRFLLVLDDVR-NEDY-SLWVDLKAPFL-A 308 (661)
Q Consensus 246 -----~~~~~~~~il~---~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~-~~~~~l~~~l~-~ 308 (661)
...++-+...+ ..+... ...+.-++....+.+.+-+++-+|+=|.-- +.|+ ..|+-+ ..|. -
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHHHH
Confidence 11222222222 222111 122334555556777778888899988632 2222 344433 3332 2
Q ss_pred CCCCcEEEEEeCChhhhcccC
Q 006107 309 AAPNSKMIITTRHSDVASTMG 329 (661)
Q Consensus 309 ~~~gs~ilvTTr~~~v~~~~~ 329 (661)
+..|+.|+++|.+......+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 457999999999988776653
No 179
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0026 Score=63.31 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=27.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV 241 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 241 (661)
..+.++|++|+|||+||..+++....+ ....++|++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~--~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK--KGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh--cCceEEEEEH
Confidence 468899999999999999999874322 1345566664
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.022 Score=57.23 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=101.4
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 178 EVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
++=|-++.+++|.+.+.-+- +-..++=|.++|++|.|||-||+.|++.-. . . |+.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--A-t-----FIrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--A-T-----FIRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--c-e-----EEEeccH----
Confidence 34578888888887764311 124566788999999999999999998733 1 2 3333331
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCCC--------------hhhHhhhhcccccC--CC
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNED--------------YSLWVDLKAPFLAA--AP 311 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~ 311 (661)
++.+..+ + +-..+.+.+.+.- ...+.+|++|.++... +...-+++..+... ..
T Consensus 220 ElVqKYi----G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKYI----G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHHh----c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2222221 1 1122333444333 3568999999987521 12233444444332 34
Q ss_pred CcEEEEEeCChhhhcc-----cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH----HH
Q 006107 312 NSKMIITTRHSDVAST-----MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL----AA 382 (661)
Q Consensus 312 gs~ilvTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL----ai 382 (661)
+.|||..|.......- ..-...++...-+.+.-.++|.-|. ........-.+ +.|++.|.|.-- |+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 5688887765443321 1223567776445555556666554 22222222222 466777777653 34
Q ss_pred HHHHHHhc
Q 006107 383 KTLEGLLR 390 (661)
Q Consensus 383 ~~~~~~l~ 390 (661)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 44455543
No 181
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.09 E-value=0.0017 Score=73.90 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=67.5
Q ss_pred ccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
.++|-++.++.|.+.+... ..+.....+.++|++|+|||+||+.+..... ...+.++.+.-....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~~~---- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERH---- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcccc----
Confidence 4789999888888887631 1123345789999999999999999977532 122334443321111
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHhhcC-CceEEEEEeCCCCCChhhHhhhhcccc
Q 006107 253 ALLESITSAASDLNTLNEVQVQLKKAVD-GKRFLLVLDDVRNEDYSLWVDLKAPFL 307 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 307 (661)
. ...+.+........+ ....+.+.+. ....+|+||+++..+...++.+...+.
T Consensus 529 ~-~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 T-VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred c-HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 122222211111000 0111222222 334699999999988777777776654
No 182
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.09 E-value=0.00055 Score=82.18 Aligned_cols=120 Identities=11% Similarity=-0.012 Sum_probs=78.9
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccC--CCCCc---hhhHhhHhhhhcCC-cccCcC--CCCcceeecC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRG--GPNTS---YLRMEAWSGVFGNI-SAVDET--LKKCLQFLRP 601 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~--~~~~~---~~~~~~l~~~~~~l-~~lP~~--~L~~LryL~L 601 (661)
+.+.+.+..+..... .+..+..+++||+|.+.++.. ..|.. ....+.|+.....+ ..+|.. ++.+|++|+|
T Consensus 141 ~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 455666555443221 133466777788887765532 11111 11122233222222 256776 9999999999
Q ss_pred CCCCcc-cccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 602 KYTSER-EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 602 ~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
++|.+. .+|..+ +|.+|++|++++|.-...+|..++++++|+.+++..+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 999966 799999 9999999999997644589999999999987776554
No 183
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.07 E-value=0.012 Score=55.24 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=61.7
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
-.++||-++-++++.-.-.+ ++.+-+.|.||+|+||||-+..+.+..--.. .-+.+.=.+.|+
T Consensus 26 l~dIVGNe~tv~rl~via~~----gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASd------------ 88 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE----GNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASD------------ 88 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc----CCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCcc------------
Confidence 35689999988887665533 3455678999999999998877766532111 112222222222
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhc-------CCceEEEEEeCCCCCChhhHhhhhccc
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAV-------DGKRFLLVLDDVRNEDYSLWVDLKAPF 306 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~l 306 (661)
....+-....++.+- .++.-++|||..+++....-..+++.+
T Consensus 89 ---------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtM 137 (333)
T KOG0991|consen 89 ---------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 137 (333)
T ss_pred ---------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHH
Confidence 222333333333221 255668999999987655555555443
No 184
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0075 Score=61.85 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=47.5
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-hhccc-CCCceeecCCCChHhHHHHHHHh
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-VASTM-GPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
+++-++|+|+++..+...-+.+...+.....++.+|++|.+.. +...+ ..-..+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556799998887776777666654445676777777643 33222 22356889999999998888654
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.03 E-value=0.00055 Score=69.84 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=42.3
Q ss_pred CccccchhhHHHHHHHHhcCCC--CCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSD--HANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+++|.++.++++++++..... +...+++.++|++|+||||||+.+.+...
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3799999999999999976332 23457899999999999999999987654
No 186
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0036 Score=68.13 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=91.6
Q ss_pred cCccccchhhHHHHHHHHhcCC--CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSS--DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
+.+-+|-++-+++|++.|.-.. ..-.-++++++||||+|||+|++.+++-.. ..| +-++++.--|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHhccc
Confidence 3457999999999999985311 122336999999999999999999987532 133 23444444444333111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhh----HhhhhcccccCC-------------CCcEEE
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSL----WVDLKAPFLAAA-------------PNSKMI 316 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~-------------~gs~il 316 (661)
=-..+ +..+ ......+++ .+.+.-+++||.++...... -..++..|.+-. .=|.|+
T Consensus 396 RRTYI-----GamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYI-----GAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccc-----ccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00001 1111 122222222 24566799999997643110 122222222211 113333
Q ss_pred -EEeCCh-h--hhcccCCCceeecCCCChHhHHHHHHHhhc
Q 006107 317 -ITTRHS-D--VASTMGPIEHYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 317 -vTTr~~-~--v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
|||-+. . .+..+....++++.+-+++|=.++-+++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 444432 1 122234457899999999998888877753
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.02 E-value=0.011 Score=63.88 Aligned_cols=179 Identities=14% Similarity=0.077 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhc------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHH
Q 006107 177 HEVFGREEDKAKILDMVNT------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 250 (661)
.++.|.+..++.+.+.... ..+-..++-|.++|++|+|||.+|+.+.+.... .| +-++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhH------Hh
Confidence 3567776655555442211 111134567889999999999999999886432 11 112211 11
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------hh----HhhhhcccccCCCCcEEEEE
Q 006107 251 LKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--------SL----WVDLKAPFLAAAPNSKMIIT 318 (661)
Q Consensus 251 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------~~----~~~l~~~l~~~~~gs~ilvT 318 (661)
.. ...+ .....+...+...-...+++|++|+++..-. .. ...+...+.....+.-||.|
T Consensus 296 ----~~----~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 ----FG----GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ----cc----cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 10 0000 1111222222222235789999999974210 00 11122222222334445567
Q ss_pred eCChhhh-----cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 319 TRHSDVA-----STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 319 Tr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
|...... +...-...+.+..-+.++-.++|..+.......... ..-...+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 6654221 111223568888889999999998876432211100 011356677776664
No 188
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.00 E-value=0.023 Score=61.90 Aligned_cols=204 Identities=17% Similarity=0.128 Sum_probs=116.6
Q ss_pred ccccchhhHHHHHHHHhcCCCC-CCeEEEEEeccCCChHHHHHHHHhccccc---c--cCCCCEEEEEEeCCCCCHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDH-ANFVVIPIVGMGGIGKTTLAREVYNDKAV---A--DSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~--~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
.+-+|+.|..+|.+.+...-.. ..-..+-|.|.+|.|||..+..|.+.... + -..|+ .+.++.-.-..+.++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 4568999999999988662222 33348999999999999999999885431 1 11343 3445555556789999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhHhhhhccc-ccCCCCcEEEEEeCCh---
Q 006107 252 KALLESITSAASDLNTLNEVQVQLKKAV-----DGKRFLLVLDDVRNEDYSLWVDLKAPF-LAAAPNSKMIITTRHS--- 322 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~ilvTTr~~--- 322 (661)
..|...+.+... ........|..+. ..+..++++|+++..-...-+-+-..| ++..++++++|-+=..
T Consensus 476 ~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 476 EKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 999999986542 2222333333333 245688899988653211111222223 2346788876644321
Q ss_pred --------hhhcccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 323 --------DVASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 323 --------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
.+...++ ...+...|-++++-.++...+..+. +.......+-++++|+.-.|-.-.|+...-+
T Consensus 553 lPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred CHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1111111 1346667777777777776665333 1122233344455555555555555544433
No 189
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.99 E-value=0.011 Score=60.87 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
++|....+.++.+.+..-... -.-|.|+|.+|+||+++|+.+.+...-.. ..-+-|++..- + .+.+... +
T Consensus 1 liG~S~~m~~~~~~~~~~a~~--~~pVLI~GE~GtGK~~lAr~iH~~s~r~~---~pfv~vnc~~~-~-~~~l~~~---l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL--DRPVLIIGERGTGKELIAARLHYLSKRWQ---GPLVKLNCAAL-S-ENLLDSE---L 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC--CCCEEEECCCCChHHHHHHHHHHhcCccC---CCeEEEeCCCC-C-hHHHHHH---H
Confidence 478888888888777664322 23578999999999999999876532111 12233444322 1 2222221 1
Q ss_pred ccCCCC-CCCHH-HHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeCC
Q 006107 259 TSAASD-LNTLN-EVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTRH 321 (661)
Q Consensus 259 ~~~~~~-~~~~~-~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr~ 321 (661)
.+.... ..... .....+. ....-.|+||++..........+...+..+ ....+||.||..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 111100 00000 0000111 112346899999988766666665554322 123578888764
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0077 Score=69.45 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|.+..+++|.+++...- .-...+-+.++|++|+|||+||+.+++... . .| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~-~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--A-YF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--C-eE---EEEecH-----
Confidence 457899999999888764210 112345688999999999999999987632 1 21 222211
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhcccccC-CCCcEE
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLAA-APNSKM 315 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~i 315 (661)
++. .... ......+...+.......+.+|+||+++.... .....+...+... ..+..+
T Consensus 247 -~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 0000 01112222333333445678999999865310 1122233332221 223334
Q ss_pred EE-EeCChh-hhccc----CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 316 II-TTRHSD-VASTM----GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 316 lv-TTr~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
+| ||.... +...+ .-...+.+...+.++-.+++..+.-.. ..... .....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCH
Confidence 44 444322 11111 112457788888888888887554211 11111 123567788888753
No 191
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.99 E-value=0.00016 Score=80.01 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=48.3
Q ss_pred cccccccCCCCceEEeeccccCC-CCCchh----hHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcccccccc-ccc
Q 006107 545 NKFEVFYEIELLRTFLPFCIRGG-PNTSYL----RMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQ 616 (661)
Q Consensus 545 ~~~~~~~~~~~LrsL~~~~~~~~-~~~~~~----~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~ 616 (661)
.+|+.+..+++||.|.+..+... .|...+ ..+.|.....+++.||+. ++..|+.|-..++.|..+| .+ +|.
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP 452 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence 34778888999999988765321 222211 122233334455566655 6666666666666666666 55 666
Q ss_pred ccceeecccccccc
Q 006107 617 NWNMAIWCKHTYLV 630 (661)
Q Consensus 617 ~Lq~L~l~~c~~l~ 630 (661)
.|+++|++ |+.|.
T Consensus 453 qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLS 465 (1081)
T ss_pred cceEEecc-cchhh
Confidence 66666664 45443
No 192
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0018 Score=72.23 Aligned_cols=157 Identities=20% Similarity=0.220 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++||++|++++++.|.....+ ++ .++|.+|||||++|.-++.+.-. ...--+..++. + +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN-NP---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D------- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN-NP---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----D------- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC-CC---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----c-------
Confidence 45899999999999999764322 22 36899999999988766554211 10000111110 0 1
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCCCh--------hhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNEDY--------SLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
+. .+.....-..++++....+.+.+ +..+.+|++|.++..-- .+-..++.|....+.--.|-.||-+ +.
T Consensus 234 ~g-~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~-EY 311 (786)
T COG0542 234 LG-SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD-EY 311 (786)
T ss_pred HH-HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH-HH
Confidence 11 11111112234555444444444 34589999999976310 1122233333332222234445544 33
Q ss_pred hcc-------cCCCceeecCCCChHhHHHHHHHh
Q 006107 325 AST-------MGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 325 ~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
-.. ....+.+.+...+.+++..++...
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 222 133477889999999988887643
No 193
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.92 E-value=0.0034 Score=69.04 Aligned_cols=45 Identities=31% Similarity=0.407 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP----NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999998876443 2235679999999999999999753
No 194
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.92 E-value=0.00073 Score=62.25 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=28.3
Q ss_pred cceEEEeeeCCCcccccccccc-CCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC-CCCcceeecCCCCCcc
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFY-EIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTSER 607 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~i~ 607 (661)
+.|.+++.++.+.. ++.+. .+.+|++|.+.++. +++++.. .|.+|+.|+++++.|+
T Consensus 20 ~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~-------------------I~~l~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 20 KLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQ-------------------ITKLEGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---------------------S--TT----TT--EEE--SS---
T ss_pred cccccccccccccc---ccchhhhhcCCCEEECCCCC-------------------CccccCccChhhhhhcccCCCCCC
Confidence 34666666655433 22333 35677777766542 2333333 6677788888887777
Q ss_pred cccccc--cccccceeecccccccccCCc--cccccccccccccccc
Q 006107 608 EKKLSV--SIQNWNMAIWCKHTYLVTGSV--NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 608 ~LP~si--~L~~Lq~L~l~~c~~l~~LP~--~i~~l~~L~~~~~~~~ 650 (661)
++++.+ .+++|++|++++ ..+..+-. .+..+++|+.+++..|
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCC
Confidence 776655 477788888776 55655532 2234445554444433
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=96.90 E-value=0.027 Score=64.47 Aligned_cols=160 Identities=12% Similarity=0.044 Sum_probs=99.2
Q ss_pred ec--cCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEE
Q 006107 208 VG--MGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFL 285 (661)
Q Consensus 208 ~G--~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 285 (661)
.| |.++||||+|..++++.-... .-...+-++.++..+.. ..++++..+....+. -..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEE
Confidence 36 788999999999988732111 11245666666644443 334444333211100 0124579
Q ss_pred EEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhccc-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchh
Q 006107 286 LVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTM-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQI 363 (661)
Q Consensus 286 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 363 (661)
+|||+++..+....+.++..+-.....+++|++|.+. .+...+ .....+.+.+++.++....+...+...+- . .
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~---i 709 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---L 709 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C---C
Confidence 9999999998778888887776545567777666543 332222 22367999999999988887765532221 1 1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHH
Q 006107 364 SESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 364 ~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
..+....|++.++|.+..+..+..
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 134678999999999865544433
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.89 E-value=0.018 Score=66.54 Aligned_cols=177 Identities=17% Similarity=0.167 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|.+..++.|.+.+... .+-..++-+.++|++|+|||+||+.+.+.... .| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEeh----
Confidence 44678887777777665320 01123455889999999999999999886331 22 22221
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC------------hhhHhhhhccccc--CCCCc
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED------------YSLWVDLKAPFLA--AAPNS 313 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs 313 (661)
.++ +.... ......+...+...-...+.+|+||+++... ......++..+.. ...+.
T Consensus 521 ~~l----~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEI----LSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHH----hhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111 11110 0111122222333334667999999986421 0111223333322 12344
Q ss_pred EEEEEeCChhhhc-c-c---CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 314 KMIITTRHSDVAS-T-M---GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 314 ~ilvTTr~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
-||.||....... . . .-...+.+...+.++-.++|..+..... ...... ...+++.|.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 5666665543322 1 1 2235688888888888888876642221 111112 356777787764
No 197
>PTZ00494 tuzin-like protein; Provisional
Probab=96.88 E-value=0.091 Score=54.53 Aligned_cols=171 Identities=10% Similarity=0.161 Sum_probs=101.8
Q ss_pred CCCCCcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHH
Q 006107 171 SSVPTEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 171 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 250 (661)
..+.....+|.|+.|-..+.+.|.+.. ...++++.+.|.-|.||++|.+....... -..++|++.... +-
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld-~aHPRIvV~TG~~GcGKSslcRsAvrkE~------~paV~VDVRg~E---Dt 434 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA-PSHPRIVALAGGSGGGRCVPCRRAVRVEG------VALVHVDVGGTE---DT 434 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc-CCCCcEEEEecCCCCCchHHHHHHHHHcC------CCeEEEEecCCc---ch
Confidence 344456779999998888888776643 35678999999999999999999887643 345788887654 44
Q ss_pred HHHHHHHhccCCCCC--CCHHHHHH---HHHhhcCCceEEEEEeCCCCCC-hhhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 251 LKALLESITSAASDL--NTLNEVQV---QLKKAVDGKRFLLVLDDVRNED-YSLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 251 ~~~il~~l~~~~~~~--~~~~~l~~---~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
++.+.+.++.+..+. +.++-..+ .-+....++.-+||+-==+-.+ ...+++.. .|.....-|.|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhh
Confidence 666777777544321 12222222 2222344565566653221111 01222221 22333445677764443332
Q ss_pred hcc---cCCCceeecCCCChHhHHHHHHHhh
Q 006107 325 AST---MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 325 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
... ......|.+.+|+.++|.++..+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 211 1233678899999999988776543
No 198
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.84 E-value=0.0093 Score=56.95 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCC-CCChhhHhhhhccccc--CCCCcEEEEEeCChhhhcccC
Q 006107 268 LNEVQVQLKKAVDGKRFLLVLDDVR-NEDYSLWVDLKAPFLA--AAPNSKMIITTRHSDVASTMG 329 (661)
Q Consensus 268 ~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~~~ 329 (661)
-++....+.+.+-..+-+|+-|+-- +.|...-..+...+.. ...|..||+.|.+..++..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3455556778888888899999742 2232333344444433 245889999999999988543
No 199
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0035 Score=60.28 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
.-.++.|+|++|+|||+++.++..... . ....++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~-~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--R-QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--h-CCCeEEEEECCC-CCHHHHHH
Confidence 346999999999999999999876532 2 446789999876 66655443
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.0049 Score=67.05 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=57.4
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
+.-+++.++|++|+||||||..+++.. .| .++=++.|+.-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 456899999999999999999998762 23 4566778887777666666655444322 12
Q ss_pred --CCceEEEEEeCCCCCChhhHhhhh
Q 006107 280 --DGKRFLLVLDDVRNEDYSLWVDLK 303 (661)
Q Consensus 280 --~~kr~LlVlDdv~~~~~~~~~~l~ 303 (661)
.+++.-||+|.++-......+.++
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHH
Confidence 267889999999876533333333
No 201
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.00086 Score=58.19 Aligned_cols=22 Identities=50% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.81 E-value=0.0021 Score=65.74 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=54.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
.-+.++|++|+|||+||..+++....+ -..++|+++. +++..+...-.. ...+.... +. .+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~~---~~-~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTAD------ELIEILREIRFN---NDKELEEV---YD-LLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHH------HHHHHHHHHHhc---cchhHHHH---HH-Hhc-c
Confidence 468899999999999999998875422 2355666543 333333321111 11111111 22 122 1
Q ss_pred eEEEEEeCCCCCChhhHh--hhhcccccC-CCCcEEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLWV--DLKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTr~ 321 (661)
-=||||||+.......|. .+...+... ..+..+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 248999999665433332 233322221 235578888874
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0098 Score=58.60 Aligned_cols=82 Identities=12% Similarity=0.305 Sum_probs=48.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
-++|.++||||.|||+|++.+++...++- ..|....-+.++. ..++..-+.. .......+..++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 37899999999999999999999875542 1333333333322 2222222211 12234455556666666
Q ss_pred Cce--EEEEEeCCCC
Q 006107 281 GKR--FLLVLDDVRN 293 (661)
Q Consensus 281 ~kr--~LlVlDdv~~ 293 (661)
++. +.+.+|.|+.
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 554 4556798865
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.80 E-value=0.0057 Score=59.58 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=34.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 250 (661)
-.++.|+|++|+|||++|.+++.... . ....++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~--~-~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA--K-NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--H-CCCeEEEEECC-CCCHHHH
Confidence 46899999999999999999987643 2 34578899887 5555443
No 205
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.77 E-value=0.013 Score=54.93 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=65.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC--CCCCHHHH------HHHHHHHhccCC------CCCCCH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS--DNFDVFNI------LKALLESITSAA------SDLNTL 268 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~--~~~~~~~~------~~~il~~l~~~~------~~~~~~ 268 (661)
.+++|+|+.|.|||||.+.++.-.. .....++++-. ...+.... ..++++.++... .....-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3899999999999999999987543 23344444311 11122211 111333333211 111222
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccC-CC-CcEEEEEeCChhhh
Q 006107 269 NEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAA-AP-NSKMIITTRHSDVA 325 (661)
Q Consensus 269 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTTr~~~v~ 325 (661)
+...-.+.+.+...+-++++|+--. .+......+...+... .. +..||++|......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3333445666777888999999753 3333444444444321 22 67888888875543
No 206
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.76 E-value=0.025 Score=64.82 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=73.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|+...+..+.+.+..-.. ....|.|+|++|+|||++|+.+.+.....+ ...+.+++..-. ...+-..++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~--~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~---~~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ--SDSTVLILGETGTGKELIARAIHNLSGRNN---RRMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhcCCCC---CCeEEEecccCC-hhHhhhhhcC
Confidence 4689999999988877765321 123578999999999999999987532111 233444444321 1111111111
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeCCh
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTRHS 322 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr~~ 322 (661)
...+..... .......+. ....-.|+|||++.........+...+..+ ..+.|||.||..+
T Consensus 450 ~~~~~~~g~--~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTGA--SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccccc--ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 110000000 001111221 112347999999988766666666555321 1345888888653
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0063 Score=55.60 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=29.9
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
++.|+|++|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3679999999999999999876432 335677887765543
No 208
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.73 E-value=0.0052 Score=60.30 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=36.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~ 251 (661)
-.++.|+|++|+|||+|+.+++-...... +....++|++....++..++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 46899999999999999999974422111 013588999988877765443
No 209
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0043 Score=64.94 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=38.7
Q ss_pred Cccccch---hhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhccccc
Q 006107 177 HEVFGRE---EDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAV 228 (661)
Q Consensus 177 ~~~vGR~---~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 228 (661)
.++-|-+ +|+++|++.|..+. ++.=++-|.++|++|.|||-||+.+.-...|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3456665 46778888886632 2334567889999999999999999887654
No 210
>PLN03150 hypothetical protein; Provisional
Probab=96.69 E-value=0.001 Score=74.84 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=21.6
Q ss_pred CCCcceeecCCCCCcc-cccccc-cccccceeecccccccccCCcccc
Q 006107 592 LKKCLQFLRPKYTSER-EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLN 637 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~ 637 (661)
.|.+|++|+|++|.+. .+|+++ +|.+|++|+|+++.--..+|..++
T Consensus 464 ~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 4555555555555443 345555 555555555544322224444443
No 211
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.039 Score=61.53 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=102.4
Q ss_pred Cccccchh---hHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREE---DKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~---e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.++.|-++ |++++++.|..+. +..-++=+.++||+|.|||-||+.++-...| -|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV--------PF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------PFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--------ceeeechH----
Confidence 45678765 5555666665521 2244567889999999999999999987554 23444432
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC---------------hhhHhhhhcccccCCCCc
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED---------------YSLWVDLKAPFLAAAPNS 313 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs 313 (661)
++.+.+.+.. . ..........-...+.++.+|+++... ...+++++..+.....+.
T Consensus 379 ----EFvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222111 1 111122222334678899999886532 122444444443333233
Q ss_pred --EEEEEeCChhhhcc-----cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 314 --KMIITTRHSDVAST-----MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 314 --~ilvTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
-+|-+|....+... -.-...+.++.-+.....++|.-++-..... .+..++.+ |+..+-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHHH
Confidence 23334444333221 1223668888888888999999887443322 23345556 8899999886643
No 212
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.68 E-value=0.00025 Score=78.61 Aligned_cols=66 Identities=15% Similarity=0.017 Sum_probs=45.9
Q ss_pred ccCcC--CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccccccccccccccc
Q 006107 587 AVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHIGA 653 (661)
Q Consensus 587 ~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~~~ 653 (661)
.+|.. .+.||+.|+++.|.|+++|.++ ++.+||+|+|. |+.+..||.++.++++|+++|++.+-..
T Consensus 59 ~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 59 SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec-cchhhcCchhHHhhhcccccccchhccC
Confidence 34444 6677777777777777777777 77777777774 5777777777777777777766555433
No 213
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.67 E-value=0.012 Score=57.24 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=53.9
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC---------CCCCHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILKALLESITSAAS---------DLNTLN 269 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---------~~~~~~ 269 (661)
-.++.|+|++|+|||+|+.+++......+ +.-..++|++....++...+. .+......... ...+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 35899999999999999999875532110 011567899988777765543 33333221100 123444
Q ss_pred HHHHHHHhhc----CCceEEEEEeCCCC
Q 006107 270 EVQVQLKKAV----DGKRFLLVLDDVRN 293 (661)
Q Consensus 270 ~l~~~l~~~l----~~kr~LlVlDdv~~ 293 (661)
++...+.... ..+.-|+|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 5554444443 23455899999753
No 214
>PRK06696 uridine kinase; Validated
Probab=96.66 E-value=0.0022 Score=62.37 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=36.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 181 GREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 181 GR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.|.+-+++|.+.+.... .+.+.+|+|.|.+|+||||||+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~-~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN-LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC-CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36677788888886533 3457799999999999999999998764
No 215
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.66 E-value=0.013 Score=52.50 Aligned_cols=103 Identities=19% Similarity=0.161 Sum_probs=58.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
.+++|+|+.|.|||||++.+..-.. .....+|+.-.. .+.-- .....-+...-.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999987643 223444442100 00000 00122223333455666677
Q ss_pred eEEEEEeCCCC-CChhhHhhhhcccccCCCCcEEEEEeCChhhh
Q 006107 283 RFLLVLDDVRN-EDYSLWVDLKAPFLAAAPNSKMIITTRHSDVA 325 (661)
Q Consensus 283 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~ 325 (661)
+-++++|+-.. .+......+...+... +..||++|......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 78999998754 3333444444443332 34678888765544
No 216
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.62 E-value=0.012 Score=55.03 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=60.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc--C-------------CCCCCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITS--A-------------ASDLNT 267 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~--~-------------~~~~~~ 267 (661)
.+++|.|+.|+|||||++.+..-... ....+++.-. +.......+-..+.- . ......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 37999999999999999999875432 2233333211 111111111111110 0 001111
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccCCCCcEEEEEeCChhhhc
Q 006107 268 LNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 268 ~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~ 326 (661)
-+...-.+.+.+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122333455666677889999997643 32333333333322223677888888766554
No 217
>PLN03150 hypothetical protein; Provisional
Probab=96.62 E-value=0.0026 Score=71.72 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=45.8
Q ss_pred cCcC--CCCcceeecCCCCCcc-cccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 588 VDET--LKKCLQFLRPKYTSER-EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 588 lP~~--~L~~LryL~L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+|.. +|.+|++|+|++|.+. .+|.++ .|.+|++|+|+++.--..+|..+++|++|+.++++.|
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 4444 7778888888888765 688888 8888888888775322367877888888877776544
No 218
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.011 Score=57.48 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=67.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc-----cc--cC---CC---CEEEEEEe----CCCC--CH----------------
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA-----VA--DS---KF---DVKAWVCV----SDNF--DV---------------- 247 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~-----~~--~~---~f---~~~~wv~v----~~~~--~~---------------- 247 (661)
.+++|+||.|.|||||.+.+..-.. +. +. .+ ..+.||.- ...| ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 4899999999999999999976221 10 00 01 23455531 1111 11
Q ss_pred ------HHHHHHHHHHhccCCC------CCCCHHHHHHHHHhhcCCceEEEEEeCCCC----CChhhHhhhhcccccCCC
Q 006107 248 ------FNILKALLESITSAAS------DLNTLNEVQVQLKKAVDGKRFLLVLDDVRN----EDYSLWVDLKAPFLAAAP 311 (661)
Q Consensus 248 ------~~~~~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~ 311 (661)
.+...+.++.++...- ..+.-+.....+.+.|..++=|++||.--. ......-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 1333444444433211 122233444557788889999999998433 222333334444443 3
Q ss_pred CcEEEEEeCChhhh
Q 006107 312 NSKMIITTRHSDVA 325 (661)
Q Consensus 312 gs~ilvTTr~~~v~ 325 (661)
|..||+.|.+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88999999875443
No 219
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.019 Score=54.90 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=93.6
Q ss_pred CccccchhhHH---HHHHHHhcCC--CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKA---KILDMVNTSS--DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~---~l~~~L~~~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
++++|.++.+. -|++.|..+. ++-.++-|..+|++|.|||.+|+.+.+..++. | + .+. ..+++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp---~---l--~vk----at~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP---L---L--LVK----ATELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc---e---E--Eec----hHHHH
Confidence 56899877654 3556665432 23456788899999999999999999985532 1 1 111 11111
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHH-HhhcCCceEEEEEeCCCCCCh------------hhHhhhhccccc--CCCCcEEE
Q 006107 252 KALLESITSAASDLNTLNEVQVQL-KKAVDGKRFLLVLDDVRNEDY------------SLWVDLKAPFLA--AAPNSKMI 316 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~------------~~~~~l~~~l~~--~~~gs~il 316 (661)
.+ .++ +.....+.+ .+.-+..++++++|.++...- ...+.++..+.. .+.|...|
T Consensus 189 Ge---hVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 GE---HVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HH---Hhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11 111 111122222 222345689999999865320 112333333322 34566666
Q ss_pred EEeCChhhhccc-C--CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC
Q 006107 317 ITTRHSDVASTM-G--PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL 378 (661)
Q Consensus 317 vTTr~~~v~~~~-~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 378 (661)
-.|.+....... . -...++..--+.+|-.+++..++-.-.-+- ..-.+.++++++|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 666655443321 1 114466666677888888887763221111 11135666666665
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.016 Score=62.73 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..++-|..+||||+|||++|+.+.+.... .| +.+... ++ +....+ +....+...+.+.-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~---nF-----lsvkgp----EL----~sk~vG-----eSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGM---NF-----LSVKGP----EL----FSKYVG-----ESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcC---Ce-----eeccCH----HH----HHHhcC-----chHHHHHHHHHHHh
Confidence 45667889999999999999999987432 33 333221 11 111110 11112222233333
Q ss_pred CCceEEEEEeCCCCCC-----------hhhHhhhhcccccCCCCcEEEE---EeCChhhhcc-cC---CCceeecCCCCh
Q 006107 280 DGKRFLLVLDDVRNED-----------YSLWVDLKAPFLAAAPNSKMII---TTRHSDVAST-MG---PIEHYNLKSLLD 341 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~ilv---TTr~~~v~~~-~~---~~~~~~l~~L~~ 341 (661)
+-.+.+|.||.++... ......++..+........|+| |.|...+-.. +. ....+.+..-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 4456889999886532 1123334444433333333333 3343332221 22 336677888888
Q ss_pred HhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 342 DDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 342 ~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
+...++|+.++-.-.... .-.+ .+|++++.|.-
T Consensus 605 ~aR~~Ilk~~~kkmp~~~-~vdl----~~La~~T~g~S 637 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSE-DVDL----EELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHHhcCCCCc-cccH----HHHHHHhccCC
Confidence 888899998874332221 1122 45666666654
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.017 Score=62.77 Aligned_cols=152 Identities=18% Similarity=0.054 Sum_probs=80.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN--FDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..-|.|.|+.|+|||+||+.+++... +. ..-.+.+++++.- -..+.+.+.+- ..+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 34688999999999999999998865 33 4555666665532 12222222221 1233445
Q ss_pred CCceEEEEEeCCCCCC------hhhHh-----------hhhcccccCCCCcE--EEEEeCChhhhc-ccC----CCceee
Q 006107 280 DGKRFLLVLDDVRNED------YSLWV-----------DLKAPFLAAAPNSK--MIITTRHSDVAS-TMG----PIEHYN 335 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~------~~~~~-----------~l~~~l~~~~~gs~--ilvTTr~~~v~~-~~~----~~~~~~ 335 (661)
...+-+|||||++-.- ..+|. ++...+. ..+.+ +|.|.....-.. ... ......
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 6778999999986421 01111 1111122 23333 444444321111 111 114567
Q ss_pred cCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC
Q 006107 336 LKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL 378 (661)
Q Consensus 336 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 378 (661)
|.++...+-.++++... ..... ....+...-+..+|+|.
T Consensus 570 L~ap~~~~R~~IL~~~~-s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIF-SKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred cCCcchhHHHHHHHHHH-Hhhhh---hhhhHHHHHHHHhcCCc
Confidence 88888887777776543 22221 11122223377888876
No 222
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.57 E-value=0.0097 Score=59.94 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=48.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..++++|+|++|+||||++..+......+. .-..+..++.... ....+.+....+.++.+.....+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 346999999999999999998877654321 1124555654431 1223334444444443322233444454444433
Q ss_pred CCceEEEEEeCC
Q 006107 280 DGKRFLLVLDDV 291 (661)
Q Consensus 280 ~~kr~LlVlDdv 291 (661)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777753
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.55 E-value=0.0078 Score=56.95 Aligned_cols=88 Identities=20% Similarity=0.171 Sum_probs=52.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCC---CCCCHHH-HHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAAS---DLNTLNE-VQVQLK 276 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~-l~~~l~ 276 (661)
++++.++|+.|+||||.+..++.....+ -..+..++... .....+.++...+.++.+.. ...+..+ +...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4699999999999999887777665432 23556666542 34566778888888875422 1222222 333333
Q ss_pred hhcCCceEEEEEeCCC
Q 006107 277 KAVDGKRFLLVLDDVR 292 (661)
Q Consensus 277 ~~l~~kr~LlVlDdv~ 292 (661)
..-.++.=++++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 3322233477777664
No 224
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.55 E-value=0.032 Score=61.99 Aligned_cols=134 Identities=12% Similarity=0.160 Sum_probs=74.1
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
...++|....++++.+.+..-.. ....|.|+|++|+|||++|+.+.+...... ...+.+++..- + ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~--~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~-~-~~~~~~-- 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR--SNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAAL-S-ETLLES-- 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC--cCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCC-C-HHHHHH--
Confidence 45789999999999988866432 123577999999999999999987532111 12234444432 1 122221
Q ss_pred HHhccCCCCC-CC-HHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 256 ESITSAASDL-NT-LNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 256 ~~l~~~~~~~-~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
.+.+..... .. .......+. ....-.|+||+++.........+...+..+. ...+||.||...
T Consensus 266 -~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 266 -ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred -HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 121111100 00 000000010 1223468999999987766666766553321 135788877643
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.55 E-value=0.0059 Score=61.21 Aligned_cols=133 Identities=19% Similarity=0.281 Sum_probs=69.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEE-E---EEeCCCC---------C
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKA-W---VCVSDNF---------D 246 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-w---v~v~~~~---------~ 246 (661)
-+|..+..--.++|+.+ ....|.+.|.+|.|||.||-...-..-.....|.-.+ . +.+.++. .
T Consensus 227 ~prn~eQ~~ALdlLld~----dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 227 RPRNAEQRVALDLLLDD----DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred CcccHHHHHHHHHhcCC----CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 45677777777777654 4679999999999999998654222111111333222 1 1222221 1
Q ss_pred HHHHHHHHH---HHhccCCCCCCCHHHHHHHHH---------hhcCCc---eEEEEEeCCCCCChhhHhhhhcccccCCC
Q 006107 247 VFNILKALL---ESITSAASDLNTLNEVQVQLK---------KAVDGK---RFLLVLDDVRNEDYSLWVDLKAPFLAAAP 311 (661)
Q Consensus 247 ~~~~~~~il---~~l~~~~~~~~~~~~l~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 311 (661)
+.--.+.+. +.+..... .....+...+. .+.+|+ +-++|+|.+.+..+. ++...+...+.
T Consensus 303 m~PWmq~i~DnLE~L~~~~~--~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNE--PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhcccc--cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhccC
Confidence 111122222 22222111 11111221111 123343 459999999987654 44445566788
Q ss_pred CcEEEEEeCC
Q 006107 312 NSKMIITTRH 321 (661)
Q Consensus 312 gs~ilvTTr~ 321 (661)
||||+.|--.
T Consensus 378 GsKIVl~gd~ 387 (436)
T COG1875 378 GSKIVLTGDP 387 (436)
T ss_pred CCEEEEcCCH
Confidence 9999988653
No 226
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.55 E-value=0.013 Score=54.52 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=57.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE------eCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC------VSDNFDVFNILKALLESITSAASDLNTLNEVQVQLK 276 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~------v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~ 276 (661)
.+++|+|+.|+|||||.+.+..-... ....+++. +.+... ...-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 38999999999999999999865332 22333322 111111 122223333455
Q ss_pred hhcCCceEEEEEeCCCCC-ChhhHhhhhcccccC-CC-CcEEEEEeCChhhhc
Q 006107 277 KAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAA-AP-NSKMIITTRHSDVAS 326 (661)
Q Consensus 277 ~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTTr~~~v~~ 326 (661)
+.+..++-++++|+--.. +......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666677889999997542 333333333333221 12 367778887765444
No 227
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.54 E-value=0.00072 Score=38.77 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=9.4
Q ss_pred ceeecCCCCCcccccccc
Q 006107 596 LQFLRPKYTSEREKKLSV 613 (661)
Q Consensus 596 LryL~L~~t~i~~LP~si 613 (661)
|+||+|++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555544
No 228
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.54 E-value=0.012 Score=54.57 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=60.6
Q ss_pred EEEEEeccCCChHHHHHHHHhccc---cccc--CCCC--EEEEEEeCCCCCHHHHHHHHHHHhccCCC----C---CCCH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK---AVAD--SKFD--VKAWVCVSDNFDVFNILKALLESITSAAS----D---LNTL 268 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~---~~~~--~~f~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~----~---~~~~ 268 (661)
.+++|+|+.|+|||||.+.+..+. .+.. ..|. ...|+ .+ .+.+..+..... . ...-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 489999999999999999885321 1110 0110 12232 21 344555543211 1 1111
Q ss_pred HHHHHHHHhhcCCc--eEEEEEeCCCC-CChhhHhhhhccccc-CCCCcEEEEEeCChhhhc
Q 006107 269 NEVQVQLKKAVDGK--RFLLVLDDVRN-EDYSLWVDLKAPFLA-AAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 269 ~~l~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~ 326 (661)
+...-.+.+.+..+ +-++++|+.-. .+......+...+.. ...|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22333455556566 77888898654 233333444443332 124778888888876553
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.54 E-value=0.012 Score=57.12 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=31.9
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
.-.++.|.|++|+||||++.+++.... . .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~-~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--G-QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--h-cCCeEEEEECCCCCH
Confidence 346899999999999999999876643 1 334677887665543
No 230
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.51 E-value=0.012 Score=54.10 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=63.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC--CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD--NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
.+++|.|+.|.|||||.+.+..-.. .....+++.-.. ..+..+... ..++-. .+...-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 3899999999999999999987533 334555553211 111111111 111110 012222333444566666
Q ss_pred CceEEEEEeCCCC-CChhhHhhhhcccccC-CCCcEEEEEeCChhhh
Q 006107 281 GKRFLLVLDDVRN-EDYSLWVDLKAPFLAA-APNSKMIITTRHSDVA 325 (661)
Q Consensus 281 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTr~~~v~ 325 (661)
.++-++++|+.-. .+......+...+... ..|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 7788999999754 3333334444443321 2467788888876543
No 231
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.017 Score=53.56 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=60.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC--CCCHHHHHHHHHHHhcc--CCC---C-------CCCH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD--NFDVFNILKALLESITS--AAS---D-------LNTL 268 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~--~~~---~-------~~~~ 268 (661)
.+++|+|+.|.|||||.+.++.-.. .....+++.-.. ....... ...+.- ... . ...-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3899999999999999999987643 223334332110 0011111 111110 000 0 0111
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccCCCCcEEEEEeCChhhhc
Q 006107 269 NEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 269 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~ 326 (661)
+...-.+...+..++-++++|+-.. .|......+...+.....+..||++|.+.....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1222335556667778999999654 233333333333332223577888888766554
No 232
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.46 E-value=0.021 Score=52.64 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=60.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEE-------EeCCCCCHHHHHHHHHHHhcc-CCCCCCCHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWV-------CVSDNFDVFNILKALLESITS-AASDLNTLNEVQVQ 274 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~v~~~~~~~~~~~~il~~l~~-~~~~~~~~~~l~~~ 274 (661)
.+++|+|+.|.|||||++.+..-..... ..+++ .+.+...... ..+.+.+.. .......-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~----G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGS----GRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC----ceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHH
Confidence 3899999999999999999987643221 22222 1222221110 112222211 11222333334445
Q ss_pred HHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccCCCCcEEEEEeCChhhh
Q 006107 275 LKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAAAPNSKMIITTRHSDVA 325 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~ 325 (661)
+.+.+..++-++++|+--.. +......+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 56666677788999986542 323333333333322 46688888776544
No 233
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.44 E-value=0.0071 Score=62.35 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|+...+.++.+.+..-... ..-|.|+|.+|+||+++|+.+........ ...+.+++..- +...+...++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~--~~pVlI~GE~GtGK~~lA~~iH~~s~r~~---~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL--DKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC--CCCEEEECCCCCcHHHHHHHHHHhCCccC---CCeEEEeCCCC-CHHHHHHHHcc
Confidence 35899999999998888664322 23577999999999999999875422111 12234444432 22222222221
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
.-........ ......+.. ...=.|+|||++.........+...+..+. ...+||.||...
T Consensus 80 ~~~~~~~g~~--~~~~g~l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQ--KRHPGRFER---ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCcc--cccCCchhc---cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1000000000 000111111 122358899999987666666666553221 135888887653
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.01 Score=58.68 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=48.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
.-+.++|++|+|||.||..+.+... + .--.+.++++ .+++.++...... ......+...+. +
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~------~el~~~Lk~~~~~----~~~~~~l~~~l~-----~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITA------PDLLSKLKAAFDE----GRLEEKLLRELK-----K 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEH------HHHHHHHHHHHhc----CchHHHHHHHhh-----c
Confidence 3578999999999999999999865 3 2235556643 4555555554432 111112222222 2
Q ss_pred eEEEEEeCCCCCChhhHh
Q 006107 283 RFLLVLDDVRNEDYSLWV 300 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~ 300 (661)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 239999999765434443
No 235
>PRK13695 putative NTPase; Provisional
Probab=96.43 E-value=0.0039 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
-++|+|++|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999887643
No 236
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.047 Score=58.49 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=86.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
+.-|.++||+|+|||-||+.|+|.... +| ++|..+ +++.... + .........+++.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~---NF-----isVKGP----ELlNkYV---G------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA---NF-----ISVKGP----ELLNKYV---G------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC---ce-----EeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcC
Confidence 445789999999999999999998542 44 444332 2222111 1 1112233344455567
Q ss_pred ceEEEEEeCCCCCCh-----------hhHhhhhccccc--CCCCcEEEEEeCChhhhc-c-cC---CCceeecCCCChHh
Q 006107 282 KRFLLVLDDVRNEDY-----------SLWVDLKAPFLA--AAPNSKMIITTRHSDVAS-T-MG---PIEHYNLKSLLDDD 343 (661)
Q Consensus 282 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~-~-~~---~~~~~~l~~L~~~e 343 (661)
.+++|+||.++..-+ ...++++..+.. ...|.-||-.|..+.+.. . +. -...+.+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 899999999975321 123344444433 234555665555443322 1 12 23567788888889
Q ss_pred HHHHHHHhhcCCCCCC-cchhhHHHHHHHHHHcCCCh
Q 006107 344 CWSIFIKHALEGRDLS-AHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 344 ~~~Lf~~~~~~~~~~~-~~~~~~~~~~~I~~~~~G~P 379 (661)
-.++++........+. ..-.+.++++. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999988775322221 12234444432 2555664
No 237
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.35 E-value=0.029 Score=61.07 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=44.2
Q ss_pred CccccchhhHHHHHHHHhcCC-CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE
Q 006107 177 HEVFGREEDKAKILDMVNTSS-DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC 240 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 240 (661)
.+++--.+-++++..||...- .....+++.++||+|+||||.++.+++.. .|+..-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 445555677889999997632 22345699999999999999999998762 466777865
No 238
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.35 E-value=0.0075 Score=61.24 Aligned_cols=84 Identities=23% Similarity=0.181 Sum_probs=53.7
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCCHHHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-----SDLNTLNEVQVQL 275 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~l 275 (661)
.-+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .++.++... ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 3468899999999999999998765432 34567899887766653 233333211 1223445555555
Q ss_pred HhhcC-CceEEEEEeCCC
Q 006107 276 KKAVD-GKRFLLVLDDVR 292 (661)
Q Consensus 276 ~~~l~-~kr~LlVlDdv~ 292 (661)
...++ +..-++|+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 456699999975
No 239
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.33 E-value=0.0033 Score=67.65 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHHhc--CCCCCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 178 EVFGREEDKAKILDMVNT--SSDHANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
+++|.++.+++|++.|.. ..-+..-+++.++||+|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 589999999999999833 11123446999999999999999999987543
No 240
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.33 E-value=0.023 Score=53.07 Aligned_cols=121 Identities=22% Similarity=0.212 Sum_probs=69.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC-------------------CCC------------------
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS-------------------DNF------------------ 245 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-------------------~~~------------------ 245 (661)
.|++|.|++|+|||||.+-+..=... =.+.+|+.-. +.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~----~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP----DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC----CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 38999999999999999988553322 2245555421 111
Q ss_pred -------CHHHHHHHHHHHhccCCC------CCCCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc-CC
Q 006107 246 -------DVFNILKALLESITSAAS------DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA-AA 310 (661)
Q Consensus 246 -------~~~~~~~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 310 (661)
..++...++++.++.... ..+.-++..-.|.+.|.=++-++.||..-+. |++.-.+++..+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 112222333333322111 1223344455677788877889999998764 34444444444432 34
Q ss_pred CCcEEEEEeCChhhhcc
Q 006107 311 PNSKMIITTRHSDVAST 327 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~~ 327 (661)
.|-.+|+.|.....|..
T Consensus 185 eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 185 EGMTMIIVTHEMGFARE 201 (240)
T ss_pred cCCeEEEEechhHHHHH
Confidence 57777777777666654
No 241
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.33 E-value=0.1 Score=52.99 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=41.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
+.++=.......+..++... +.|.|.|++|+||||+|+.+..... . ..+.|+.+...+..+++.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~------~~ilL~G~pGtGKTtla~~lA~~l~-----~-~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD------RRVMVQGYHGTGKSTHIEQIAARLN-----W-PCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC------CcEEEEeCCCChHHHHHHHHHHHHC-----C-CeEEEEecCCCChhhcCC
Confidence 34444445566677777432 2588999999999999999987633 1 123566666555544433
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.027 Score=58.22 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=50.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
.+++|+|+|++|+||||++..++...... .+ .+..++.... ....+-+....+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 35799999999999999999997654321 22 3444544321 22334444444444433222334455555554432
Q ss_pred CC-ceEEEEEeCCCC
Q 006107 280 DG-KRFLLVLDDVRN 293 (661)
Q Consensus 280 ~~-kr~LlVlDdv~~ 293 (661)
.. ..=++++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234778887654
No 243
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.021 Score=62.15 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred cCccccchhhHHHHHHHHhcC--CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTS--SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
+.+-+|.++-+++|++++.-. .+..+-++++.+||+|||||++|+.++.-.. + .| +-++|+.-.+..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-R--kF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-R--KF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-C--ce---EEEeccccccHHhhccc
Confidence 456799999999999988542 1223346999999999999999999987543 1 23 22455555555443211
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh----hhHhhhhccccc-------------CCCCcEEE
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY----SLWVDLKAPFLA-------------AAPNSKMI 316 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~-------------~~~gs~il 316 (661)
=-..++ .. ...+...|++. +-.+-|+.||.|+.... +--..++..+.+ .-.=|+|+
T Consensus 484 RRTYVG-----AM-PGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYVG-----AM-PGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeeec-----cC-ChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 100111 11 12223333322 34456888999875321 001112222211 11235665
Q ss_pred E-EeCChhhhcc----cCCCceeecCCCChHhHHHHHHHhh
Q 006107 317 I-TTRHSDVAST----MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 317 v-TTr~~~v~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
. .|-+ .+... ......|++.+-..+|=..+-.++.
T Consensus 557 FicTAN-~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTAN-VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEecc-ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 4 3322 12111 1233678888888888877776665
No 244
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.31 E-value=0.017 Score=58.95 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=41.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.-.++-|+|++|+|||+|+.+++-..... +..-..++|++....|+++++.+ +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 34688999999999999998876432211 11224789999999888888654 455554
No 245
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.0027 Score=58.55 Aligned_cols=80 Identities=10% Similarity=0.123 Sum_probs=42.9
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCC---CCHHHHHHHHHhhcC
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDL---NTLNEVQVQLKKAVD 280 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~l~ 280 (661)
++.|.|.+|+||||+|..+..... ...+++.....+ ..+....+..........- +....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~------~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG------LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC------CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 688999999999999999876421 122344433333 3344455543333222211 111223444444333
Q ss_pred CceEEEEEeCC
Q 006107 281 GKRFLLVLDDV 291 (661)
Q Consensus 281 ~kr~LlVlDdv 291 (661)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 2 237888886
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.28 E-value=0.015 Score=59.02 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCCHHHHHHH
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-----SDLNTLNEVQVQ 274 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~ 274 (661)
+.-+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .+++++... ......++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 34468999999999999999988766432 33467788877665553 233333221 122345555555
Q ss_pred HHhhcC-CceEEEEEeCCCC
Q 006107 275 LKKAVD-GKRFLLVLDDVRN 293 (661)
Q Consensus 275 l~~~l~-~kr~LlVlDdv~~ 293 (661)
+...++ +..-++|+|.+-.
T Consensus 125 ~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHhhccCCcEEEEcchhh
Confidence 544443 4566999999853
No 247
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.28 E-value=0.0078 Score=59.62 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=39.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.+.=|+|++|+|||.|+.+++-..... ++.-..++|++....|+..++. +|++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 488999999999999998876443221 1123479999999999988765 455543
No 248
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.014 Score=60.58 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=51.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
.++.++|+.|+||||++..+......+. ....+..++... .....+.++...+.++.+.....+..++...+.+ +.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 4899999999999999999987643221 123455555332 2345566666666665443322222333333332 344
Q ss_pred ceEEEEEeCCCCC
Q 006107 282 KRFLLVLDDVRNE 294 (661)
Q Consensus 282 kr~LlVlDdv~~~ 294 (661)
+ -++++|..-..
T Consensus 216 ~-DlVLIDTaG~~ 227 (374)
T PRK14722 216 K-HMVLIDTIGMS 227 (374)
T ss_pred C-CEEEEcCCCCC
Confidence 4 45669988543
No 249
>PRK05439 pantothenate kinase; Provisional
Probab=96.25 E-value=0.021 Score=57.71 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHH
Q 006107 199 HANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITS--AASDLNTLNEVQVQLK 276 (661)
Q Consensus 199 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~--~~~~~~~~~~l~~~l~ 276 (661)
.+.+-+|+|.|.+|+||||+|+.+..-..... ....+.-++...-+...+.+.. ..+.. ..++.-+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHH
Confidence 45678999999999999999998876432110 1123334444433333222221 11111 1123345566666666
Q ss_pred hhcCCce
Q 006107 277 KAVDGKR 283 (661)
Q Consensus 277 ~~l~~kr 283 (661)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6656654
No 250
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0058 Score=56.98 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=27.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEE
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWV 239 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 239 (661)
...+|.|.|++|+||||+|+.+++.... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEE
Confidence 3458999999999999999999877532 34445555
No 251
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.24 E-value=0.028 Score=55.10 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=63.9
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----------------
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS----------------- 263 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~----------------- 263 (661)
.-.++.|+|++|+|||+|+.++..... . .-..++|++..+. ..++.+.+ ++++-...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--K-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--h-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 346899999999999999999865422 1 3357888888654 44554443 22221100
Q ss_pred ---CCCCHHHHHHHHHhhcCC-ceEEEEEeCCCC----CChhhHhhhhccccc-CCCCcEEEEEeCC
Q 006107 264 ---DLNTLNEVQVQLKKAVDG-KRFLLVLDDVRN----EDYSLWVDLKAPFLA-AAPNSKMIITTRH 321 (661)
Q Consensus 264 ---~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~----~~~~~~~~l~~~l~~-~~~gs~ilvTTr~ 321 (661)
.....+.+...+.+.+.. +.-++|+|.+-. .+......+...+.. ...|..+++|+..
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 012234555556555543 556899999752 222222222222211 2245667777653
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.004 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVA 229 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 229 (661)
.-|+|+|++|+||||+++.+.+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468999999999999999998876543
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.015 Score=53.99 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=61.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc---cCCC--C---------CCCH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT---SAAS--D---------LNTL 268 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~---~~~~--~---------~~~~ 268 (661)
.+++|+|+.|.|||||.+.++.... .....++++-..-.+.. ..+...+. .... . ...-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3899999999999999999987533 23344444211100000 01111111 0000 0 0111
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccC-CCCcEEEEEeCChhhhc
Q 006107 269 NEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAA-APNSKMIITTRHSDVAS 326 (661)
Q Consensus 269 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTTr~~~v~~ 326 (661)
+...-.+...+..++-++++|+--.. |......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22233456667778889999997543 333333344433321 23677888888765544
No 254
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.23 E-value=0.041 Score=60.27 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|....++++.+.+..-... ..-|.|.|..|+||+.+|+.+++..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~--~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS--DATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC--CCcEEEECCCCcCHHHHHHHHHHhc
Confidence 35899999999888887653322 2357899999999999999998653
No 255
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.20 E-value=0.015 Score=59.16 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=25.4
Q ss_pred CCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 199 HANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 199 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
-..+..+.|+|++|+|||.+|+.+++...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 35678999999999999999999998744
No 256
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.20 E-value=0.018 Score=55.99 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=72.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhccCCC-------CCCCHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-----NFDVFNILKALLESITSAAS-------DLNTLNE 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~il~~l~~~~~-------~~~~~~~ 270 (661)
.+++|+|.+|+|||||++.+..=.. .-.+.+++.-.+ .....+-..++++.++.... ....-+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~----pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE----PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC----CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3899999999999999999987543 222444444221 12233445666666653321 1122222
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCCCh-hhHhhhhccccc--CCCCcEEEEEeCChhhhcccC
Q 006107 271 VQVQLKKAVDGKRFLLVLDDVRNEDY-SLWVDLKAPFLA--AAPNSKMIITTRHSDVASTMG 329 (661)
Q Consensus 271 l~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~~~ 329 (661)
..-.+.+.+.-++-++|.|..-+.-. ..-.++...+.. ...|...+..|.+-.+...+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 33346777888999999999765421 112223333321 245777788888777776554
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.17 E-value=0.023 Score=56.18 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=52.5
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCCHHH-----
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITSA-------ASDLNTLNE----- 270 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~----- 270 (661)
-++|.|.+|+|||||++.+++..... +-+.++++-+.+.. .+.++..++...-... ..+......
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999999875421 23456667676654 3455555555421110 111111111
Q ss_pred HHHHHHhhc---CCceEEEEEeCCC
Q 006107 271 VQVQLKKAV---DGKRFLLVLDDVR 292 (661)
Q Consensus 271 l~~~l~~~l---~~kr~LlVlDdv~ 292 (661)
....+.+++ +++.+|+++||+-
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChh
Confidence 112233444 3899999999984
No 258
>PHA02244 ATPase-like protein
Probab=96.16 E-value=0.028 Score=57.65 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|.|+|++|+|||+||+.+++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999876
No 259
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.16 E-value=0.026 Score=55.12 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
....+++|.|++|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999987654
No 260
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.19 Score=47.84 Aligned_cols=153 Identities=18% Similarity=0.253 Sum_probs=82.2
Q ss_pred ccccc-hhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 178 EVFGR-EEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 178 ~~vGR-~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
+++|+ +..+.+|.+.+.-+. +-.+++-+.++|++|.|||-||+.++++ ..+.|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechH---
Confidence 45654 556666655543211 1245667889999999999999999853 35567777764
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 311 (661)
++.+..+-. . ..-..++.-. .-...+.+|+.|.+++... ...-+++..+.. ..+
T Consensus 216 -elvqk~ige----g--srmvrelfvm---arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 -ELVQKYIGE----G--SRMVRELFVM---AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -HHHHHHhhh----h--HHHHHHHHHH---HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 222222110 0 0001111111 1135677888998876321 112223333332 345
Q ss_pred CcEEEEEeCChhhhcc--c---CCCceeecCCCChHhHHHHHHHh
Q 006107 312 NSKMIITTRHSDVAST--M---GPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 312 gs~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
+.+||..|....+... . .-...++..+-+++.-.++++-+
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 6788877765433321 1 12245666677766666666544
No 261
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.14 E-value=0.039 Score=58.00 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.3
Q ss_pred EEEEeccCCChHHHHHHHHhc
Q 006107 204 VIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~ 224 (661)
+++|+|++|+||||||+.+.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc
Confidence 899999999999999999854
No 262
>PRK14974 cell division protein FtsY; Provisional
Probab=96.14 E-value=0.051 Score=55.77 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=48.7
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhccCCC---CCCCHHH-HHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF--DVFNILKALLESITSAAS---DLNTLNE-VQVQ 274 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~---~~~~~~~-l~~~ 274 (661)
.+.++.++|++|+||||++..++...... .+ .++.++. +.+ ...+.+......++.+.. ...+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999888887654322 23 3333432 222 333445556666554321 1122222 2233
Q ss_pred HHhhcCCceEEEEEeCCCCC
Q 006107 275 LKKAVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~ 294 (661)
+........-++++|-.-..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33222222238999988654
No 263
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.28 Score=49.63 Aligned_cols=133 Identities=9% Similarity=0.082 Sum_probs=80.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc--------ccccCCCCEEEEEEe-CCCCCHHHHHHHHHHHhccCCCCCCCHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK--------AVADSKFDVKAWVCV-SDNFDVFNILKALLESITSAASDLNTLNEVQ 272 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~~f~~~~wv~v-~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~ 272 (661)
.++..++|+.|.||+++|..+.+.. .... +-+...++.. .......++ +++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 4577899999999999998886553 1111 2222333321 111222221 12222221110
Q ss_pred HHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhcc-cCCCceeecCCCChHhHHHHHHH
Q 006107 273 VQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVAST-MGPIEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 273 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~ 350 (661)
.-.+.+-++|+||++.......+.++..+-...+++.+|++|.+ ..+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00246778999999888777788888888776677777765544 334332 23347799999999999877765
Q ss_pred h
Q 006107 351 H 351 (661)
Q Consensus 351 ~ 351 (661)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 3
No 264
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.12 E-value=0.026 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
..+.+|+|.|+.|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987644
No 265
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.11 E-value=0.0088 Score=54.01 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=62.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE---eCCCCCHHHHHHHHHHHhc-----cCCC-CCCCHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC---VSDNFDVFNILKALLESIT-----SAAS-DLNTLN---- 269 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~il~~l~-----~~~~-~~~~~~---- 269 (661)
..|-|++..|.||||+|....-+.. + +--.+.++. -........++..+ ..+. .... ...+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~-~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--G-HGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--H-CCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 3678889999999999977765533 2 222333433 32233444444443 1110 0000 001111
Q ss_pred ---HHHHHHHhhcCC-ceEEEEEeCCCCC---ChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 270 ---EVQVQLKKAVDG-KRFLLVLDDVRNE---DYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 270 ---~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
......++.+.. .-=|||||++-.. .....+.+...+.....+.-+|+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122233344433 4459999998543 2233455666666666788999999974
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.10 E-value=0.057 Score=57.51 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=49.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCC---CCCHHHHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASD---LNTLNEVQVQLK 276 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~ 276 (661)
.+.+|.++|++|+||||++..++...... .+ .+..++... .....+.+..+..+++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK--GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc--CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999998765422 23 334444332 123345566666665433211 122222222222
Q ss_pred hhcCCceEEEEEeCCCC
Q 006107 277 KAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 277 ~~l~~kr~LlVlDdv~~ 293 (661)
+.+.+. -++|+|..-.
T Consensus 171 ~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 171 EKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHhhcC-CEEEEECCCc
Confidence 222333 5688887743
No 267
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.09 E-value=0.039 Score=52.93 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHhhcCCceEEEEEeCCCC-CChhhHhhhhccccc-CCCCcEEEEEeCChhhhcccCCCceeecCCCC
Q 006107 275 LKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLA-AAPNSKMIITTRHSDVASTMGPIEHYNLKSLL 340 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~~~~~~~~~~l~~L~ 340 (661)
+...+..++-++++|+--. .+......+...+.. ...|..||++|.+...... ..++.++++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 4455556678999998654 233344444444432 2347788888887655443 4556665543
No 268
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.09 E-value=0.048 Score=61.63 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=81.0
Q ss_pred CccccchhhHHHHHHHHhc---CC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNT---SS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~---~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.++.|.+...+++.+.+.. .. ...-++-|.|+|++|+|||++|+.+.+...+ .| +.++.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~------ 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGS------ 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehH------
Confidence 3466776666555554322 10 0112334889999999999999999876332 22 222221
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhHhh----hhccccc--CCCC
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED----------YSLWVD----LKAPFLA--AAPN 312 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~g 312 (661)
++.. .... .........+.......+.+|+||+++... ...+.. ++..+.. ...+
T Consensus 220 ~~~~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 220 DFVE----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HhHH----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 1110 0100 111222223333334568899999997631 112222 2222221 2334
Q ss_pred cEEEEEeCChhhhcc--c---CCCceeecCCCChHhHHHHHHHhhc
Q 006107 313 SKMIITTRHSDVAST--M---GPIEHYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 313 s~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
.-+|.||........ . .-...+.+...+.++-.+++..+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 455557766543221 1 1235677888888888888877653
No 269
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.08 E-value=0.0048 Score=58.52 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=53.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc---
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV--- 279 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l--- 279 (661)
++..|.|++|.||||+++.+.......+ ..+.+..... .....+.+..+.. ...+.. .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~----~Aa~~L~~~~~~~---a~Ti~~---~l~~~~~~~ 84 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTN----KAAKELREKTGIE---AQTIHS---FLYRIPNGD 84 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSH----HHHHHHHHHHTS----EEEHHH---HTTEECCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcH----HHHHHHHHhhCcc---hhhHHH---HHhcCCccc
Confidence 4788999999999999998876544321 2233332222 1222232222211 111111 111000
Q ss_pred ------CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 280 ------DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 280 ------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
..++-+||+|++.-.+...+..+...... .|+++|+.--..
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999988776677776665544 577888765443
No 270
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0025 Score=36.49 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=18.8
Q ss_pred ccceeecccccccccCCcccccc
Q 006107 617 NWNMAIWCKHTYLVTGSVNLNFT 639 (661)
Q Consensus 617 ~Lq~L~l~~c~~l~~LP~~i~~l 639 (661)
+||+|||++| .++++|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 6999999998 899999997764
No 271
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.07 E-value=0.0096 Score=67.89 Aligned_cols=104 Identities=12% Similarity=-0.033 Sum_probs=64.7
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCC-CCCch-hhHhhHhhhhcCCcccCcCCCCcceeecCCCC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG-PNTSY-LRMEAWSGVFGNISAVDETLKKCLQFLRPKYT 604 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~-~~~~~-~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t 604 (661)
++..++.+.+..+..... +..+ .++|++|.+.++... .|.+. -..+.|+.....+..+|..-...|++|+|++|
T Consensus 197 Ip~~L~~L~Ls~N~LtsL--P~~l--~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 197 IPEQITTLILDNNELKSL--PENL--QGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHN 272 (754)
T ss_pred cccCCcEEEecCCCCCcC--Chhh--ccCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence 445677777766554432 1212 357888887765432 11111 11222333234555677663357899999999
Q ss_pred Ccccccccc-cccccceeecccccccccCCcccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLN 637 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~ 637 (661)
+|+.+|.++ . +|++|++++| .+..+|..+.
T Consensus 273 ~L~~LP~~l~~--sL~~L~Ls~N-~Lt~LP~~lp 303 (754)
T PRK15370 273 KISCLPENLPE--ELRYLSVYDN-SIRTLPAHLP 303 (754)
T ss_pred ccCccccccCC--CCcEEECCCC-ccccCcccch
Confidence 999999888 5 8999999885 6888887653
No 272
>PRK09354 recA recombinase A; Provisional
Probab=96.07 E-value=0.016 Score=59.40 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-----CCCCCHHHHHHH
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-----SDLNTLNEVQVQ 274 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~l~~~ 274 (661)
+.-+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++... ......++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 34468999999999999999998766432 34578899888777653 233333221 122345555555
Q ss_pred HHhhcC-CceEEEEEeCCCC
Q 006107 275 LKKAVD-GKRFLLVLDDVRN 293 (661)
Q Consensus 275 l~~~l~-~kr~LlVlDdv~~ 293 (661)
+...++ +..-+||+|-+-.
T Consensus 130 ~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHhhcCCCCEEEEeChhh
Confidence 554443 4566999999854
No 273
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.019 Score=53.64 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=59.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc---cCCC--C-----------CC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT---SAAS--D-----------LN 266 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~---~~~~--~-----------~~ 266 (661)
.+++|+|+.|.|||||++.+..... .....+.+.-..-.....-.......+. .... . ..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3899999999999999999986532 2334444321100000000001111111 0000 0 01
Q ss_pred CHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccC--CCCcEEEEEeCChhhhc
Q 006107 267 TLNEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAA--APNSKMIITTRHSDVAS 326 (661)
Q Consensus 267 ~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTTr~~~v~~ 326 (661)
.-+...-.+...+..++-++++|+--. .|......+...+... ..|..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112223335566667778999998654 3333334444433321 22577888888765443
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.04 E-value=0.0086 Score=56.95 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCce
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKR 283 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr 283 (661)
++.|+|+.|+||||++..+...... .....++.- .++... ........+..... ..+.......++..+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t~-e~~~E~--~~~~~~~~i~q~~v-g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILTI-EDPIEF--VHESKRSLINQREV-GLDTLSFENALKAALRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEEE-cCCccc--cccCccceeeeccc-CCCccCHHHHHHHHhcCCc
Confidence 7899999999999999987765321 223333332 221110 00000000000000 1111234445666676667
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhh
Q 006107 284 FLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVA 325 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~ 325 (661)
=++++|++.+. ......... ...|..++.|+....+.
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 79999999754 333332222 23466677777755443
No 275
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.7 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|--.++||||.|||+++.+++|..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999863
No 276
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.03 E-value=0.037 Score=56.92 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=40.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.-.++-|+|++|+|||+++.+++-...... ..-..++|++....+++.++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 346889999999999999999875532211 0124789999998888877654 33444
No 277
>PRK07667 uridine kinase; Provisional
Probab=96.02 E-value=0.0089 Score=56.61 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~--~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHK--ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456666665543 3447999999999999999999987643
No 278
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.01 E-value=0.0037 Score=70.49 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=56.1
Q ss_pred cCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcCCCCcceeecCCCCCcccccccc-cccccceeeccccccc
Q 006107 551 YEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDETLKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYL 629 (661)
Q Consensus 551 ~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l 629 (661)
.-+|.||+|.+.+.... ..-+..+|. ++++|++||+|+|+|+.| ..| +|+|||+|-+++ -.+
T Consensus 145 ~~LPsL~sL~i~~~~~~-------~~dF~~lc~--------sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~ 207 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD-------NDDFSQLCA--------SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEF 207 (699)
T ss_pred hhCcccceEEecCceec-------chhHHHHhh--------ccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCC
Confidence 35789999988764321 111222233 567899999999998888 788 999999988875 234
Q ss_pred ccCC--cccccccccccccccccc
Q 006107 630 VTGS--VNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 630 ~~LP--~~i~~l~~L~~~~~~~~~ 651 (661)
+.-+ .++-+|++|+.+|++..-
T Consensus 208 e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 208 ESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred CchhhHHHHhcccCCCeeeccccc
Confidence 4333 245678888888876653
No 279
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.99 E-value=0.029 Score=52.07 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=60.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC--CCCHHHHHHHHHHHhccCCC--C-------CCCHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD--NFDVFNILKALLESITSAAS--D-------LNTLNEV 271 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~--~-------~~~~~~l 271 (661)
.+++|+|+.|.|||||.+.+..-.. .....++++-.. ..........+ ..+..... . ...-+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 3899999999999999999986533 222333332110 11111111110 00000000 0 1111222
Q ss_pred HHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhccccc-CCCCcEEEEEeCChhhhc
Q 006107 272 QVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLA-AAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 272 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~ 326 (661)
.-.+.+.+..++-++++|+... .+......+...+.. ...|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3345556666777999999754 233333333333322 124677888888766553
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.99 E-value=0.025 Score=58.32 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=53.0
Q ss_pred eEEEEEeccCCChHH-HHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 202 FVVIPIVGMGGIGKT-TLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 202 ~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
.++|+++||.|+||| |||+..+...... .-..+..++... .....+.++...+-++.+-....+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 579999999999998 5666665543112 223555666543 33556667777777776655555666655555433
Q ss_pred CCceEEEEEeCCCC
Q 006107 280 DGKRFLLVLDDVRN 293 (661)
Q Consensus 280 ~~kr~LlVlDdv~~ 293 (661)
++. =+|.+|-+-.
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 233 3555666543
No 281
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.94 E-value=0.026 Score=54.56 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+|+|.|++|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 282
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.94 E-value=0.14 Score=45.71 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc-CcHHHHHHHHHHHHHHhhhh
Q 006107 4 VGEILLNAFLPVLFDRLASRNLLSFVRQLQVRVDSELKKWEKKLKMIQAVLCDAEEKQL-TDEAVKMWLDELQDLAYDAE 82 (661)
Q Consensus 4 ~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~-~~~~~~~Wl~~vr~~ayd~e 82 (661)
+|+.+.+|+++.+++.|.............+ +.-+++|..+++.|.-++.+.+.-.. -|..-+.-++++.+...+++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~f--k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSF--KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 4555666666666666665555555555666 77899999999999999999887532 23333667888999999999
Q ss_pred hHHHHHH
Q 006107 83 DILDEFA 89 (661)
Q Consensus 83 D~lD~~~ 89 (661)
++++.|.
T Consensus 80 ~LV~k~s 86 (147)
T PF05659_consen 80 ELVEKCS 86 (147)
T ss_pred HHHHHhc
Confidence 9999874
No 283
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.91 E-value=0.015 Score=60.14 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=66.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.++|+++.+..+...+.... -+.+.|++|+|||+||+.+..... -...++.+..+....+++....-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~------~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG------HVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC------CEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHh
Confidence 37888888888777776543 577999999999999999987633 233566677776666665443322
Q ss_pred hccCCCCCCCHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhHhhhhccc
Q 006107 258 ITSAASDLNTLNEVQVQLKKAV-----DGKRFLLVLDDVRNEDYSLWVDLKAPF 306 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l 306 (661)
...... ....+. ..-+.++++|.++......-..+...+
T Consensus 93 ~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 93 ALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 211000 000000 011159999999988755444444443
No 284
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.037 Score=53.17 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEeccCCChHHHHHHHHhc
Q 006107 204 VIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~ 224 (661)
+|+|+|++|+|||||.+.+.-
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999854
No 285
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.90 E-value=0.076 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|.|||||.+.+..-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998754
No 286
>PRK10867 signal recognition particle protein; Provisional
Probab=95.90 E-value=0.042 Score=58.39 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..+.+|.++|++|+||||.+..++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999887776644
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.90 E-value=0.088 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.|+.|+|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999654
No 288
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.054 Score=52.45 Aligned_cols=206 Identities=13% Similarity=0.183 Sum_probs=115.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc---ccccCCCCEEEEEEeCCC----------C
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK---AVADSKFDVKAWVCVSDN----------F 245 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~~f~~~~wv~v~~~----------~ 245 (661)
+.++++....+..... .+..+-..++||+|.||-|.+..+.+.. .+..-.-+.+.|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~----~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS----TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred cccHHHHHHHHHHhcc----cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 6677766666666543 2345678899999999998876554432 111112334455543322 1
Q ss_pred -----------CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceE-EEEEeCCCCCChhhHhhhhcccccCCCCc
Q 006107 246 -----------DVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRF-LLVLDDVRNEDYSLWVDLKAPFLAAAPNS 313 (661)
Q Consensus 246 -----------~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 313 (661)
.-.-+.++++..+.....- + .-..+.| ++|+-.++....+.-..+++.+-.-...+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi----e--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI----E--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch----h--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 1122333333333322110 0 0012333 67777777665556666766665555677
Q ss_pred EEEEEeCCh-hhhcccC-CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 006107 314 KMIITTRHS-DVASTMG-PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRT 391 (661)
Q Consensus 314 ~ilvTTr~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~ 391 (661)
|+|+...+. .+...+. .--.+++...+++|....+.+..-..+-. . | .+++.+|+++++|+---...+...++-
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-l-p--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-L-P--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-C-c--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 877643321 1111111 11347889999999999998876443321 1 2 578899999999986555555444433
Q ss_pred C-----------CHHHHHHHHccc
Q 006107 392 T-----------RHAAWDDILDSK 404 (661)
Q Consensus 392 ~-----------~~~~w~~~~~~~ 404 (661)
+ +.-+|+-...+.
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHH
Confidence 2 345687666543
No 289
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.87 E-value=0.033 Score=57.88 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..++=+-|+|+.|.|||.|.-.+|+...++. . ......++..++-+.+.........+.... +.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va----~~l 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K----------RRVHFHEFMLDVHSRLHQLRGQDDPLPQVA----DEL 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccc-c----------ccccccHHHHHHHHHHHHHhCCCccHHHHH----HHH
Confidence 3456788999999999999999999865422 0 111222344444444433222333444333 334
Q ss_pred CCceEEEEEeCCCCCChhh
Q 006107 280 DGKRFLLVLDDVRNEDYSL 298 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~ 298 (661)
.++..||.||++.-.+..+
T Consensus 125 ~~~~~lLcfDEF~V~DiaD 143 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIAD 143 (362)
T ss_pred HhcCCEEEEeeeeccchhH
Confidence 4566699999987665443
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.82 E-value=0.024 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 291
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.82 E-value=0.018 Score=60.03 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred CccccchhhHHHHHHHHhcC----------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC-CCC
Q 006107 177 HEVFGREEDKAKILDMVNTS----------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS-DNF 245 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~ 245 (661)
..++|.++.++.+.-.+... .....++-|.++|++|+|||++|+.+.......--..+...+...+ ...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45788888887776555431 0112346788999999999999999987644321112222222222 223
Q ss_pred CHHHHHHHHHHHh
Q 006107 246 DVFNILKALLESI 258 (661)
Q Consensus 246 ~~~~~~~~il~~l 258 (661)
+.+++++.+....
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666665544
No 292
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.82 E-value=0.058 Score=55.56 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=40.9
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.-.++-|+|++|+|||+|+..++-.... .++.-..++|++....|+++++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3468889999999999999887744221 11012378999999999888764 4555554
No 293
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.81 E-value=0.0038 Score=57.54 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=27.1
Q ss_pred CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCcccc-ccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLN-FTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~-~l~~L~~~~~~~~ 650 (661)
.|.+|+.|+|++|.|+.++ .+ .|.+|++|++++ ..+.+++..+. .+.+|+.++++.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCC
Confidence 5789999999999999997 68 999999999987 78999976653 5777877766655
No 294
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.067 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||++.+..-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 489999999999999999987653
No 295
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.80 E-value=0.01 Score=59.23 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCC
Q 006107 187 AKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLN 266 (661)
Q Consensus 187 ~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~ 266 (661)
..+++.+.... +-+.++|++|+|||++++......... .| ...-++.+..-+... ++.+++.-......
T Consensus 23 ~~ll~~l~~~~-----~pvLl~G~~GtGKT~li~~~l~~l~~~--~~-~~~~~~~s~~Tts~~-~q~~ie~~l~k~~~-- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-----RPVLLVGPSGTGKTSLIQNFLSSLDSD--KY-LVITINFSAQTTSNQ-LQKIIESKLEKRRG-- 91 (272)
T ss_dssp HHHHHHHHHCT-----EEEEEESSTTSSHHHHHHHHHHCSTTC--CE-EEEEEES-TTHHHHH-HHHCCCTTECECTT--
T ss_pred HHHHHHHHHcC-----CcEEEECCCCCchhHHHHhhhccCCcc--cc-ceeEeeccCCCCHHH-HHHHHhhcEEcCCC--
Confidence 34555555432 356899999999999999988653311 11 233445554433332 23332221110000
Q ss_pred CHHHHHHHHHhhcCCceEEEEEeCCCCCCh
Q 006107 267 TLNEVQVQLKKAVDGKRFLLVLDDVRNEDY 296 (661)
Q Consensus 267 ~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~ 296 (661)
....--.+|+.++++||+.-...
T Consensus 92 -------~~~gP~~~k~lv~fiDDlN~p~~ 114 (272)
T PF12775_consen 92 -------RVYGPPGGKKLVLFIDDLNMPQP 114 (272)
T ss_dssp -------EEEEEESSSEEEEEEETTT-S--
T ss_pred -------CCCCCCCCcEEEEEecccCCCCC
Confidence 00011247899999999976543
No 296
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.78 E-value=0.0065 Score=53.08 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=19.3
Q ss_pred EEEeccCCChHHHHHHHHhcc
Q 006107 205 IPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~ 225 (661)
|.|.|++|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 297
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.12 Score=50.44 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=92.0
Q ss_pred CccccchhhHHHHHHHHhc--------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNT--------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~--------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
+++-|-+..++.|.+...- .......+-|.++|++|.|||.||+.|..... .-|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehH----
Confidence 3467888888888776533 11224567899999999999999999987633 223444432
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCCC-------hhhHhhhhcc----c---ccCCCCc
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNED-------YSLWVDLKAP----F---LAAAPNS 313 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~----l---~~~~~gs 313 (661)
+ +..... ...+.+...|.+.- .+|+.+|++|.++... .+.-..+... + -+...|.
T Consensus 201 D----LvSKWm------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 201 D----LVSKWM------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred H----HHHHHh------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 1 111111 12233444443332 4789999999997521 0111112211 2 2233455
Q ss_pred EEEEEeCChhhhccc-C-CC-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 314 KMIITTRHSDVASTM-G-PI-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 314 ~ilvTTr~~~v~~~~-~-~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
-|+-.|..+-+.... . .. ..|. -||++..|..-..+.-.++... ...+.-.+++.+++.|..
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTPH---VLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCcc---ccchhhHHHHHhhcCCCC
Confidence 555566654333221 0 01 1222 2566666655443333333221 122233467777777764
No 298
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.12 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999998654
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.052 Score=56.87 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=54.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCC-CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDN-FDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
+++|.++|+.|+||||.+..+........ ..-..+..++.... ......++...+.++.+.......+.+...+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 46999999999999999988876543221 01224555555432 2233446666665554433334445555555443
Q ss_pred CCceEEEEEeCCCCC
Q 006107 280 DGKRFLLVLDDVRNE 294 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~ 294 (661)
...-++++|..-..
T Consensus 253 -~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 -KDFDLVLVDTIGKS 266 (388)
T ss_pred -CCCCEEEEcCCCCC
Confidence 34568889988654
No 300
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.76 E-value=0.1 Score=52.45 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=36.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.++.|.|++|+||||++.++....... +-..++|+++.. +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEccc--CHHHHHHHHHHHH
Confidence 478899999999999999987664321 234678888765 4456666665544
No 301
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.088 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999765
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.74 E-value=0.017 Score=55.78 Aligned_cols=64 Identities=23% Similarity=0.192 Sum_probs=38.2
Q ss_pred hHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 185 DKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 185 e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
+..++++.+.... ++..+|+|+|+||+|||||+..+......++ +--.++=|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~--g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT--GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT--T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc--CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCccc
Confidence 4455666665432 3457999999999999999999887766444 43455555555555543333
No 303
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.73 E-value=0.054 Score=57.53 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=22.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+.++.++|++|+||||.|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988877653
No 304
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.73 E-value=0.033 Score=61.31 Aligned_cols=134 Identities=14% Similarity=0.205 Sum_probs=75.6
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
...++|+...++++.+.+..-... ..-|.|+|..|+|||++|+.+.+...... ...+.|++..-.+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~--~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~--~~~e~-- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS--DLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPE--SLAES-- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC--CCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCCh--HHHHH--
Confidence 356899999999999988764322 23578999999999999999987533111 1334455544321 22211
Q ss_pred HHhccCCCCC-C-CHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 256 ESITSAASDL-N-TLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 256 ~~l~~~~~~~-~-~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
.+.+..... . ........+.. .+ .--|+||++..........+...+..+. ...+||.||...
T Consensus 257 -~lfG~~~g~~~ga~~~~~g~~~~--a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 257 -ELFGHVKGAFTGAISNRSGKFEL--AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred -HhcCccccccCCCcccCCcchhh--cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 121111100 0 00000001111 12 2247899999987766667766553321 245888888653
No 305
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.71 E-value=0.0075 Score=57.22 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=43.2
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCC---EEEEEEeCCCCCHHHHHHHHHHHhcc----CCCCCCCHHHHHHHHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFD---VKAWVCVSDNFDVFNILKALLESITS----AASDLNTLNEVQVQLK 276 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~v~~~~~~~~~~~~il~~l~~----~~~~~~~~~~l~~~l~ 276 (661)
||+|.|++|+||||+|+.+.......+ .. ....++............. -..... ..+..-+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987654322 22 1333333322222222111 111111 1123345667777777
Q ss_pred hhcCCceEEE
Q 006107 277 KAVDGKRFLL 286 (661)
Q Consensus 277 ~~l~~kr~Ll 286 (661)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 306
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.70 E-value=0.076 Score=54.65 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=41.7
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKALLESITS 260 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 260 (661)
.-.++-|+|++|+|||+|+.+++-.... .++.-..++|++....|++.++.. +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3468889999999999999988643221 111224789999999999888654 4555543
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.70 E-value=0.12 Score=51.51 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-C-
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-S- 263 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-~- 263 (661)
.+.+...+... +...-++|+|++|+|||||.+.+..... .....+++.-.. ....+-..++......-. .
T Consensus 98 ~~~~l~~l~~~---~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRN---NRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhC---CCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEE-eecchhHHHHHHHhccccccc
Confidence 34445555432 2346789999999999999999987643 223444442111 110011122222211100 0
Q ss_pred ------CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhh
Q 006107 264 ------DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVA 325 (661)
Q Consensus 264 ------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~ 325 (661)
-.++.........-.....+-++++|.+-.. ..+..+...+ ..|..+|+||....+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 0111111111111122246789999998653 3445554444 2578899999876553
No 308
>PTZ00035 Rad51 protein; Provisional
Probab=95.68 E-value=0.098 Score=54.01 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=39.1
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.-.++.|+|++|+|||+|+..++-.... .++.-..++|++....++..++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 3468999999999999999988644321 1112235679998887777764 34444443
No 309
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.68 E-value=0.07 Score=54.55 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=39.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.-.++.|+|++|+|||+|+..++..... .++.-..++|++....++..++ .++++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 3468999999999999999988753221 1111236799998888887764 3344444
No 310
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.67 E-value=0.016 Score=56.78 Aligned_cols=64 Identities=25% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 187 AKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 187 ~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+|+..+.... ++..+|+|+|.||+|||||.-.+......++ +--.++=|+-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~t--G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT--GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC--CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEECCCCCCCCcccccc
Confidence 34555554432 4567999999999999999988877765554 5556666666666665444433
No 311
>PRK06547 hypothetical protein; Provisional
Probab=95.67 E-value=0.01 Score=54.77 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.4
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
....+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997753
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.67 E-value=0.0088 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
No 313
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.66 E-value=0.0094 Score=57.33 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=23.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
...+|+|.|++|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998753
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.0079 Score=46.16 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 315
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.014 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999988743
No 316
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.031 Score=50.95 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=62.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC--CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF--DVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
.+++|+|+.|.|||||.+.+..... .....+++.-.... ...+. ...+.-.. +...-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHHh
Confidence 4899999999999999999987643 23455554422111 11111 11111100 01222333334555666
Q ss_pred CceEEEEEeCCCCC-ChhhHhhhhccccc-CCCCcEEEEEeCChhhhcc
Q 006107 281 GKRFLLVLDDVRNE-DYSLWVDLKAPFLA-AAPNSKMIITTRHSDVAST 327 (661)
Q Consensus 281 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~~ 327 (661)
..+-++++|+.... |......+...+.. ...+..++++|........
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66789999997642 33333334333322 1225678888887655543
No 317
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.65 E-value=0.015 Score=66.10 Aligned_cols=57 Identities=11% Similarity=-0.089 Sum_probs=33.6
Q ss_pred CCcccCcCCCCcceeecCCCCCcccccccc-cc-----------------cccceeecccccccccCCccccccccc
Q 006107 584 NISAVDETLKKCLQFLRPKYTSEREKKLSV-SI-----------------QNWNMAIWCKHTYLVTGSVNLNFTQFL 642 (661)
Q Consensus 584 ~l~~lP~~~L~~LryL~L~~t~i~~LP~si-~L-----------------~~Lq~L~l~~c~~l~~LP~~i~~l~~L 642 (661)
.++.+|. .+.+|++|+|++|.++.+|... +| .+|++|+|++ +.+..||....+|++|
T Consensus 293 ~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L 367 (788)
T PRK15387 293 QLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTLPSELYKL 367 (788)
T ss_pred ccccccc-cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCCCCccccee
Confidence 3344444 3456777777777776665522 21 3677888876 5677777654444443
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.016 Score=51.40 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=32.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA 261 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 261 (661)
+|.|.|++|+||||+|+.+.++....- + +.-.+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999988754221 1 2336777887776543
No 319
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.64 E-value=0.0074 Score=55.71 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=50.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
..++.+.||.|+|||.||+.+.+...+ + .....+-++.+.-....+. ..++..+...... ... ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~~~~~~~~-~~~~~~l~~~~~~--~v~-----~~----- 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSEYSEGDDV-ESSVSKLLGSPPG--YVG-----AE----- 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGGHCSHHHC-SCHCHHHHHHTTC--HHH-----HH-----
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhcccccchH-Hhhhhhhhhcccc--eee-----cc-----
Confidence 457889999999999999999876332 1 2345555665543331111 1111111111100 000 00
Q ss_pred ceEEEEEeCCCCCCh-----------hhHhhhhccc
Q 006107 282 KRFLLVLDDVRNEDY-----------SLWVDLKAPF 306 (661)
Q Consensus 282 kr~LlVlDdv~~~~~-----------~~~~~l~~~l 306 (661)
..-+|+||+++.... ..|..++..+
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~l 103 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLL 103 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 011999999999887 7777777665
No 320
>PRK08233 hypothetical protein; Provisional
Probab=95.64 E-value=0.0093 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..+|+|.|++|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998753
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.032 Score=59.92 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=47.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
..+++|+|++|+||||++..+......+. ....+..++... .....+.+......++.......+...+...+.+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 36899999999999999988876533221 123344554422 11223333333333332222223334444444433 3
Q ss_pred CceEEEEEeCCCC
Q 006107 281 GKRFLLVLDDVRN 293 (661)
Q Consensus 281 ~kr~LlVlDdv~~ 293 (661)
..-+|++|..-.
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 345888888754
No 322
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.078 Score=50.64 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred HHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc--CCCCcEEEEEeCChhhhccc
Q 006107 273 VQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA--AAPNSKMIITTRHSDVASTM 328 (661)
Q Consensus 273 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~~ 328 (661)
-.+.+.|.-++-+||+|..-+. |...-.++...|.. ...+..+|+.|.+-.+...+
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 3566777788889999997543 21222223333322 34566788888887666544
No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.62 E-value=0.0088 Score=57.99 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
-|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999997753
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.031 Score=58.50 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++.|+|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 325
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.61 E-value=0.076 Score=54.48 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=40.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.-.++-|+|++|+|||+++.+++...... +..-..++|++....++..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 34688999999999999999987653321 1011378999999888887754 344443
No 326
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.61 E-value=0.087 Score=56.98 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeccCCChHHH-HHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCC
Q 006107 187 AKILDMVNTSSDHANFVVIPIVGMGGIGKTT-LAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDL 265 (661)
Q Consensus 187 ~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~ 265 (661)
++|+..+... .||.|+|..|+|||| |++.+|.+-- .-++.+-++-........+.+.+.+.++......
T Consensus 362 ~~ll~~ir~n------~vvvivgETGSGKTTQl~QyL~edGY----~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 362 DQLLSVIREN------QVVVIVGETGSGKTTQLAQYLYEDGY----ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHhhC------cEEEEEecCCCCchhhhHHHHHhccc----ccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 4555555332 489999999999996 6676776511 1123333333334455677777877775433210
Q ss_pred --------------------CCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--hhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 266 --------------------NTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--SLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 266 --------------------~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
.+---+.+.|....-+|=-.||+|.++.-.. +-..-++..........++||||-..
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 0111223333333334556899999976431 11122222223334578999998763
No 327
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.60 E-value=0.068 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999997653
No 328
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.58 E-value=0.18 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999754
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.57 E-value=0.075 Score=49.26 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
++.++|++|+||||++..+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999887543
No 330
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.56 E-value=0.085 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..|+|+|..|+|||||++.+..-.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999986543
No 331
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.12 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|.|||||.+.+..-.
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 379999999999999999997653
No 332
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.55 E-value=0.089 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998765
No 333
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.54 E-value=0.093 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999765
No 334
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.54 E-value=0.038 Score=52.91 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=50.0
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhcc-------CCCCCCCHHH-----
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITS-------AASDLNTLNE----- 270 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~-------~~~~~~~~~~----- 270 (661)
-++|.|.+|+|||+|+..+.+... -+..+++-+.+. ..+.++..++...-.. ...+......
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 578999999999999999988742 345577877765 3455666655433111 1111111111
Q ss_pred ----HHHHHHhhcCCceEEEEEeCC
Q 006107 271 ----VQVQLKKAVDGKRFLLVLDDV 291 (661)
Q Consensus 271 ----l~~~l~~~l~~kr~LlVlDdv 291 (661)
..+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 1222233 699999999998
No 335
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.13 Score=47.18 Aligned_cols=50 Identities=20% Similarity=0.087 Sum_probs=30.9
Q ss_pred HHHhhcCCceEEEEEeCCCCCChhhHhhhhcc-cc-cCCCCcEEEEEeCChh
Q 006107 274 QLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAP-FL-AAAPNSKMIITTRHSD 323 (661)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~-l~-~~~~gs~ilvTTr~~~ 323 (661)
.+.+..-.++-|-+||+....-..+-..+... +. +...|..||.||..+.
T Consensus 140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 45555667888999999865422222222222 22 3567889999998653
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.53 E-value=0.12 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|.|||||.+.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 379999999999999999997653
No 337
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.53 E-value=0.011 Score=56.70 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=22.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999864
No 338
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.52 E-value=0.0096 Score=68.22 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=56.3
Q ss_pred CceEEEEEeCCCCC-ChhhHhhh----hcccccCCCCcEEEEEeCChhhhcccCCCceeecC--CCChHhHHHHHHHhhc
Q 006107 281 GKRFLLVLDDVRNE-DYSLWVDL----KAPFLAAAPNSKMIITTRHSDVASTMGPIEHYNLK--SLLDDDCWSIFIKHAL 353 (661)
Q Consensus 281 ~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTTr~~~v~~~~~~~~~~~l~--~L~~~e~~~Lf~~~~~ 353 (661)
..+-|+++|+.-.. ++.....+ ...+. ..|+.+|+||....+.........+.-. .++.+ ... | .+-+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~-p-~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLS-P-TYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCc-e-EEEE
Confidence 47899999998653 33333333 22222 3588999999987664432211111100 01111 000 0 1111
Q ss_pred CCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHcc
Q 006107 354 EGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDILDS 403 (661)
Q Consensus 354 ~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~~~ 403 (661)
..+.+. ...|-.|++++ |+|-.+.--|..+......++..++.+
T Consensus 476 ~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~ 519 (771)
T TIGR01069 476 LKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEK 519 (771)
T ss_pred CCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111 22455676666 888888888877765544455554443
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.075 Score=56.70 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=47.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
++++++|++|+||||++..+........ ....+..++....- ...+.+....+.++.+.....+..++...+.+. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4899999999999999888765533111 22355666654321 122333333443433322233344455555442 2
Q ss_pred ceEEEEEeCCCC
Q 006107 282 KRFLLVLDDVRN 293 (661)
Q Consensus 282 kr~LlVlDdv~~ 293 (661)
..=+|++|..-.
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 345888997643
No 340
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.056 Score=53.63 Aligned_cols=91 Identities=21% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-CCCCCHHHH---HHHH
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-SDLNTLNEV---QVQL 275 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-~~~~~~~~l---~~~l 275 (661)
+.-+++=|+|+.|+||||+|.+++-.... .-..++|++.-+.+++..+..-....+..-. ....+.++. ...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~---~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK---PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc---CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 44578999999999999999998766443 3448899999999998765433222121110 122333333 3333
Q ss_pred HhhcCCceEEEEEeCCCC
Q 006107 276 KKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 276 ~~~l~~kr~LlVlDdv~~ 293 (661)
......+--|+|+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 333333456899998854
No 341
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.51 E-value=0.099 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.|+.|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999764
No 342
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.50 E-value=0.052 Score=51.74 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=59.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE-------------------eCCCCCH--HHHHHHHHHHhccC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC-------------------VSDNFDV--FNILKALLESITSA 261 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------------------v~~~~~~--~~~~~~il~~l~~~ 261 (661)
.+++|+|+.|.|||||.+.+....... .-...+.++ +.+.... .....+++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYE--VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCC--CCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---
Confidence 489999999999999999987752100 001111111 1111100 00011111110
Q ss_pred CCCCCCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccC-CCCcEEEEEeCChhhhc
Q 006107 262 ASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAA-APNSKMIITTRHSDVAS 326 (661)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTr~~~v~~ 326 (661)
......-+...-.+.+.+-..+-++++|+.-. .+......+...+... ..+..||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 01122223333445666667788999999754 3333334443333321 23677888888766554
No 343
>PRK06762 hypothetical protein; Provisional
Probab=95.48 E-value=0.01 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 344
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.44 E-value=0.0082 Score=41.29 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=29.7
Q ss_pred cccceeecccccccccCCccccccccccccccccccc
Q 006107 616 QNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHIG 652 (661)
Q Consensus 616 ~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~~ 652 (661)
++||+|++++ +.+..+|..+.+|++|+.++++.+-.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCC
Confidence 4899999998 58999999999999999999977743
No 345
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.43 E-value=0.1 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36889999999999999998863
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.43 E-value=0.02 Score=50.03 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 184 EDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 184 ~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
++..++.+.|...- ..-.+|.+.|..|+||||+++.+++...
T Consensus 6 ~~t~~l~~~l~~~l--~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL--DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45556666664422 1224899999999999999999988644
No 347
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.42 E-value=0.11 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999988754
No 348
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.41 E-value=0.22 Score=49.74 Aligned_cols=131 Identities=9% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc-----------ccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV-----------ADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-----------~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
-++|...+... .-.....++|+.|+||+++|..+....-- .+.|.|..+.......
T Consensus 6 ~~~L~~~i~~~---rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~---------- 72 (290)
T PRK05917 6 WEALIQRVRDQ---KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG---------- 72 (290)
T ss_pred HHHHHHHHHcC---CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC----------
Confidence 34555555442 33457889999999999999877543210 0112222211111100
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhh-----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhccc
Q 006107 255 LESITSAASDLNTLNEVQVQLKKA-----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTM 328 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~ 328 (661)
..-..++.. .+.+. ..++.-++|+|+++......++.++..+-...+++.+|++|.+ ..+...+
T Consensus 73 ---------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 73 ---------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ---------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 001122221 22222 2355668999999999888999998888766667776666665 4444332
Q ss_pred -CCCceeecCCC
Q 006107 329 -GPIEHYNLKSL 339 (661)
Q Consensus 329 -~~~~~~~l~~L 339 (661)
.....+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 22345556554
No 349
>PTZ00301 uridine kinase; Provisional
Probab=95.41 E-value=0.012 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..+|+|.|++|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999887653
No 350
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.40 E-value=0.12 Score=50.31 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCC-------C-----------
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAA-------S----------- 263 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-------~----------- 263 (661)
-.++.|.|++|+|||+|+.++..... + .-..++|++.... ..++... +++++... .
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~-~--~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL-R--DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH-h--cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 35899999999999999998765422 1 3346788876443 3333322 22221100 0
Q ss_pred ------CCCCHHHHHHHHHhhcCC---ceEEEEEeCCCCC---ChhhHhhhhccccc--CCCCcEEEEEeCC
Q 006107 264 ------DLNTLNEVQVQLKKAVDG---KRFLLVLDDVRNE---DYSLWVDLKAPFLA--AAPNSKMIITTRH 321 (661)
Q Consensus 264 ------~~~~~~~l~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTTr~ 321 (661)
...+.+++...+.+..+. +.-++|+|.+... .+..-..+...+.. ...|..+++|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 012445555555555432 4468899997543 11111111111111 2458888888863
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.39 E-value=0.093 Score=51.46 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=34.6
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.-.++.|.|++|+|||++|.++....- + .-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H--cCCcEEEEEeeC--CHHHHHHHH
Confidence 346899999999999999998765422 1 345788888765 455555543
No 352
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.38 E-value=0.076 Score=56.29 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=48.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC------CCCCCCHHH-----H
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA------ASDLNTLNE-----V 271 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~------~~~~~~~~~-----l 271 (661)
..++|+|+.|+|||||++.+..... ....++++.-...-++.++....+...... ..+...... .
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3789999999999999998876532 222444444333445555544444433111 111111111 1
Q ss_pred HHHHHhhc--CCceEEEEEeCCC
Q 006107 272 QVQLKKAV--DGKRFLLVLDDVR 292 (661)
Q Consensus 272 ~~~l~~~l--~~kr~LlVlDdv~ 292 (661)
...+.+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 11223333 4899999999984
No 353
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.15 Score=48.34 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=34.3
Q ss_pred HHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc-CCCCcEEEEEeCChhhhcccCCCce
Q 006107 274 QLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA-AAPNSKMIITTRHSDVASTMGPIEH 333 (661)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~~~~~~~~ 333 (661)
.+.+.+-=++-+.|||..++- +......+...+.. ..+|+-+|+.|..+.++....+...
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 344444445679999998873 22222222222211 2347778888888888877655433
No 354
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.37 E-value=0.02 Score=59.68 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=31.8
Q ss_pred CCcccCcCCCCcceeecCCCCC---cccccccc-ccc------------------ccceeecccccccccCCcccccccc
Q 006107 584 NISAVDETLKKCLQFLRPKYTS---EREKKLSV-SIQ------------------NWNMAIWCKHTYLVTGSVNLNFTQF 641 (661)
Q Consensus 584 ~l~~lP~~~L~~LryL~L~~t~---i~~LP~si-~L~------------------~Lq~L~l~~c~~l~~LP~~i~~l~~ 641 (661)
.+..||.+ |+.|+|+++. +.+||+++ .|. +|++|++++|.. ..+|.+ --.+
T Consensus 106 ~L~sLP~s----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-i~LP~~--LP~S 178 (426)
T PRK15386 106 EISGLPES----VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-IILPEK--LPES 178 (426)
T ss_pred cccccccc----cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc-ccCccc--cccc
Confidence 34455543 4444444432 67777777 663 577777777653 345543 2346
Q ss_pred cccccccc
Q 006107 642 LQLSDFGT 649 (661)
Q Consensus 642 L~~~~~~~ 649 (661)
|+.+.++.
T Consensus 179 Lk~L~ls~ 186 (426)
T PRK15386 179 LQSITLHI 186 (426)
T ss_pred CcEEEecc
Confidence 66555543
No 355
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.35 E-value=0.015 Score=66.08 Aligned_cols=63 Identities=6% Similarity=-0.117 Sum_probs=37.8
Q ss_pred CCcccCcCCCCcceeecCCCCCcccccccccccccceeecccccccccCCccccccccccccccccc
Q 006107 584 NISAVDETLKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+..+|.. ..+|++|+|++|.++.+|... .+|+.|++++ +.+.+||.+++++.+|+.+++..|
T Consensus 393 ~Lt~LP~l-~s~L~~LdLS~N~LssIP~l~--~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 393 RLTSLPVL-PSELKELMVSGNRLTSLPMLP--SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cccCCCCc-ccCCCEEEccCCcCCCCCcch--hhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 34444442 345666777777776666533 2355677766 457777777777776666665444
No 356
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.34 E-value=0.17 Score=49.60 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccCCCCcEEEEEeCChhhhc
Q 006107 275 LKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~ 326 (661)
+.+.+-.++-++++|+-.. .+......+...+.....|..||++|.+.....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 4445555677999999754 233333444443332223677888888876654
No 357
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.53 Score=51.72 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=92.1
Q ss_pred cccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHH
Q 006107 179 VFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFN 249 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 249 (661)
+=|..+.++.+.+.+.-+. .-....-|.++|++|.|||.||..+..... .-+++|-.+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----H
Confidence 4455555666666554422 112234588999999999999999976522 124566553 2
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhccccc--CCCCcEEE
Q 006107 250 ILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLA--AAPNSKMI 316 (661)
Q Consensus 250 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~il 316 (661)
++... ++. ..+.......+.-.-++++|+||.+++..+ ..-++++..+.. +-.|.-|+
T Consensus 737 lL~Ky---IGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSKY---IGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHH---hcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 22222 221 223334444555567999999999987431 234445554432 23455555
Q ss_pred E-EeCChhhhcc---cCCC-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHH
Q 006107 317 I-TTRHSDVAST---MGPI-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLA 381 (661)
Q Consensus 317 v-TTr~~~v~~~---~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 381 (661)
- |||.+-+-.. .|.. ..+.-..-++.+-.++|....-.- ...... ..+.++.+++|.--|
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~v----dl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDV----DLECLAQKTDGFTGA 872 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCcccc----chHHHhhhcCCCchh
Confidence 4 5554322211 1222 223333444556666666544111 111111 135677777777543
No 358
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.32 E-value=0.0093 Score=50.40 Aligned_cols=22 Identities=55% Similarity=0.676 Sum_probs=19.0
Q ss_pred EEEeccCCChHHHHHHHHhccc
Q 006107 205 IPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|-|+|++|+|||+||+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987663
No 359
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.30 E-value=0.11 Score=50.85 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCC-Ch---hhHhhhhcccccCCCCcEEEEEeCChhhhccc
Q 006107 269 NEVQVQLKKAVDGKRFLLVLDDVRNE-DY---SLWVDLKAPFLAAAPNSKMIITTRHSDVASTM 328 (661)
Q Consensus 269 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~---~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~~ 328 (661)
+.....+...|..+.=+|+||+--+. |. .+.-++...+. ...|..||+++.+...+...
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh
Confidence 33444567778888888999985331 21 22222222222 24577899999987666543
No 360
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.29 E-value=0.027 Score=48.27 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHhc---CCCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 178 EVFGREEDKAKILDMVNT---SSDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++|-.-..+.+.+.+.. ......+-|++.+|.+|+|||.+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456666555555555433 223456779999999999999988887665
No 361
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.28 E-value=0.037 Score=63.17 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=33.0
Q ss_pred CcccCcCCCCcceeecCCCCCcccccccccccccceeecccccccccCCcccc
Q 006107 585 ISAVDETLKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLN 637 (661)
Q Consensus 585 l~~lP~~~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~ 637 (661)
+..+|..-...|++|+|++|.|+.+|..+ ..+|++|+|++| .|..+|..+.
T Consensus 337 Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 337 LTSLPASLPPELQVLDVSKNQITVLPETL-PPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred cccCChhhcCcccEEECCCCCCCcCChhh-cCCcCEEECCCC-cCCCCCHhHH
Confidence 34455442246777777777777777766 136777888774 5777777653
No 362
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.19 Score=49.29 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHhhcCCceEEEEEeCCCC-CChhhHhhhhcccccCCCCcEEEEEeCChhhhc
Q 006107 274 QLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~ 326 (661)
.+...+..++-+++||+... .+......+...+.....|..||++|.+.....
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 34556667788999999754 233333444444433222667888888766654
No 363
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.27 E-value=0.042 Score=60.55 Aligned_cols=133 Identities=10% Similarity=0.065 Sum_probs=70.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|....+.++.+.+..-.... ..|.|+|..|+||+++|+.+.+..... -..-+.++++.-. .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~--~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLD--APLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCC--CCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccccCC--HHHHHH---
Confidence 368999988888887775432212 247799999999999999976542211 1122445544422 222221
Q ss_pred HhccCCCCC-CCH-HHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 257 SITSAASDL-NTL-NEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 257 ~l~~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
.+.+..... ... +.....+.. ...-.|+||+++.........+...+..+. ...+||.||...
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 121111100 000 000001111 122357899999887666666665553321 234788877654
No 364
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.26 E-value=0.69 Score=47.25 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=33.6
Q ss_pred eeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 333 HYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 333 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
++++.+++.+|+..++.-+.-.+--. .....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998776332211 11223445677777789999754
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.25 E-value=0.09 Score=51.87 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=62.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCC--CC--EEEEEEeC----CCCCHHHHHH--------------HHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSK--FD--VKAWVCVS----DNFDVFNILK--------------ALLESITS 260 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~--~~~wv~v~----~~~~~~~~~~--------------~il~~l~~ 260 (661)
.+++|+|+.|+|||||++.+........+. ++ .+.++.-. ...++.+.+. ++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 489999999999999999997764321111 11 12222111 1112333222 12222211
Q ss_pred CC------CCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccC--CCCcEEEEEeCChhhhc
Q 006107 261 AA------SDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAA--APNSKMIITTRHSDVAS 326 (661)
Q Consensus 261 ~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTr~~~v~~ 326 (661)
.. .....-+...-.+...+...+-+++||+--.. +......+...+... ..+..||++|.+.....
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 10 00111122233455666777889999997542 333333333333221 23677888888765544
No 366
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.21 Score=54.69 Aligned_cols=181 Identities=18% Similarity=0.137 Sum_probs=93.9
Q ss_pred CCcCccccchhhHH---HHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC
Q 006107 174 PTEHEVFGREEDKA---KILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF 245 (661)
Q Consensus 174 ~~~~~~vGR~~e~~---~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 245 (661)
..-.++-|.++.++ ++++.|..+. +..-++-+.++|++|.|||.||+.+.....+. +|. .|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--Ff~------iSGS- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FFS------ISGS- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--cee------ccch-
Confidence 34456789876555 5555565432 22446678899999999999999999886653 221 1111
Q ss_pred CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhHhhhhccc----ccCC-
Q 006107 246 DVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED----------YSLWVDLKAPF----LAAA- 310 (661)
Q Consensus 246 ~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~l----~~~~- 310 (661)
++.+.+-+ -..........+..+..++++++|.++... ..++++.+..+ ....
T Consensus 218 -------~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 -------DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -------hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 11111111 011122233444555678999999987532 23344433333 2222
Q ss_pred -CCcEEEEEeCChhhhcc-----cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 311 -PNSKMIITTRHSDVAST-----MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 311 -~gs~ilvTTr~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
.|..|+-.|..+.|... ..-...+.++.-+-..-.++++-++-...-.. .-.+ ..|++.+-|.-.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-~Vdl----~~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-DVDL----KKIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-cCCH----HHHhhhCCCccc
Confidence 23334434443434321 12224555666665666667765543222111 1111 237777777654
No 367
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.25 E-value=0.036 Score=57.80 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred CccccchhhHHHHHHHHhcC--------C--CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC-CCC
Q 006107 177 HEVFGREEDKAKILDMVNTS--------S--DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS-DNF 245 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--------~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~ 245 (661)
..++|.++.++.+..++... . ....+..+.++|++|+|||+||+.+.......--+++...|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 45889999888888777431 0 011246789999999999999999977643221122322222221 123
Q ss_pred CHHHHHHHHHHHh
Q 006107 246 DVFNILKALLESI 258 (661)
Q Consensus 246 ~~~~~~~~il~~l 258 (661)
+..++++.+....
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665544
No 368
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.24 E-value=0.19 Score=54.84 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=69.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.++|......++.+.+.... ... ..+.|.|..|+||+++|+.+...... .....+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a-~~~-~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~--~~~~~~~~l-- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS-RSD-ITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAI--PKDLIESEL-- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh-CcC-CeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCC--CHHHHHHHh--
Confidence 47888777777777665432 122 35789999999999999999765321 1112223333322 223333222
Q ss_pred hccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 258 ITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
++........... ......-....-.|+||++..........+...+..+. .+.+||+||...
T Consensus 206 fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1111100000000 00000011123358999999987766666665553321 245888888654
No 369
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.068 Score=55.11 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=54.5
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
+.++++|+|+.|+||||++..+......+ -..+.+++.... ....+.++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35799999999999999999887654322 234566665432 23455566666655543322345555555554332
Q ss_pred C-CceEEEEEeCCCC
Q 006107 280 D-GKRFLLVLDDVRN 293 (661)
Q Consensus 280 ~-~kr~LlVlDdv~~ 293 (661)
. +..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345788887754
No 370
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.24 E-value=0.1 Score=50.83 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=30.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.++.|.|++|+||||||.+++.... +. . ..+++++.. .+..++++.+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~-~~-g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFL-QN-G-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH-hC-C-CcEEEEeCC--CCHHHHHHHH
Confidence 4899999999999999876655432 11 2 345666633 3455665555
No 371
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.083 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999853
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.23 E-value=0.014 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++|.|.|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 373
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.20 E-value=0.24 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+++|.|+.|.|||||++.+..-..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC
Confidence 3899999999999999999977643
No 374
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.20 E-value=0.11 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||++.+..-.
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 489999999999999999997653
No 375
>PRK04040 adenylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+.+|+|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998764
No 376
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.16 E-value=0.097 Score=49.45 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCC-------CCEEEEEEeCCC
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSK-------FDVKAWVCVSDN 244 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~v~~~ 244 (661)
++.|+|++|+|||+++..+.......... -..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999998887664422111 136778876655
No 377
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.15 E-value=0.14 Score=53.56 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=48.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|.|++|+|||||+.+++..... ....++|++.... ..++. .-+..++.... ...+.+.+...+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 58999999999999999998865432 2246777776433 33332 22334432211 1233444444443
Q ss_pred hcCCceEEEEEeCCCC
Q 006107 278 AVDGKRFLLVLDDVRN 293 (661)
Q Consensus 278 ~l~~kr~LlVlDdv~~ 293 (661)
..+.-++|+|.+..
T Consensus 156 --~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 --ELKPDLVIIDSIQT 169 (372)
T ss_pred --hcCCcEEEEcchHH
Confidence 23566889998753
No 378
>PRK06217 hypothetical protein; Validated
Probab=95.15 E-value=0.032 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.|.|.|.+|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999987644
No 379
>PRK03839 putative kinase; Provisional
Probab=95.14 E-value=0.014 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998864
No 380
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.22 Score=54.81 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=74.3
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAV 279 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 279 (661)
..++.+.++|++|.|||.||+.+.+.... .|-. +... + ++.... ..........+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~-----v~~~----~----l~sk~v-----Gesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS---RFIS-----VKGS----E----LLSKWV-----GESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEE-----eeCH----H----Hhcccc-----chHHHHHHHHHHHHH
Confidence 45568999999999999999999985321 3322 2111 1 111000 011122333334444
Q ss_pred CCceEEEEEeCCCCCC-----------hhhHhhhhcccccC--CCCcEEEEEeCChhhhcc--c---CCCceeecCCCCh
Q 006107 280 DGKRFLLVLDDVRNED-----------YSLWVDLKAPFLAA--APNSKMIITTRHSDVAST--M---GPIEHYNLKSLLD 341 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~ 341 (661)
+..+..|++|+++..- .....+++..+... ..+..||-||........ . .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6788999999996521 01233344444322 233334545544332221 1 2235788899999
Q ss_pred HhHHHHHHHhhc
Q 006107 342 DDCWSIFIKHAL 353 (661)
Q Consensus 342 ~e~~~Lf~~~~~ 353 (661)
++..+.|..+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 381
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.13 E-value=0.085 Score=55.67 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=51.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCCHHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITSA-------ASDLNTLNE---- 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 270 (661)
..++|+|+.|+|||||++.+.+.. ..+.++.+-+.+.. .+.++...++..-... ..+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 378999999999999999998642 33566666666554 3345555554331111 111111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCCCC
Q 006107 271 -VQVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 271 -l~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
....+.+++ +++++|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 111233333 58999999999843
No 382
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.11 E-value=0.13 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 383
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.11 E-value=0.12 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||++.++.-.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998653
No 384
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.09 E-value=0.066 Score=49.00 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=62.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEE--EEEEeCCCCCHHHHHHHHHHHhcc--CCC----CCCC-------
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVK--AWVCVSDNFDVFNILKALLESITS--AAS----DLNT------- 267 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~--~wv~v~~~~~~~~~~~~il~~l~~--~~~----~~~~------- 267 (661)
..|-|++..|.||||.|..+.-+..-. .+... -|+.-........++..+ .+.- ... ...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 478888889999999997776553322 23221 244433233444454443 1110 000 0011
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEeCCCCC---ChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 268 LNEVQVQLKKAVDG-KRFLLVLDDVRNE---DYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 268 ~~~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
..+.....++.+.. .-=|+|||.+-.. .....+++...+....++.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11223333444444 4459999998532 1123445666665566778999999974
No 385
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.08 E-value=0.11 Score=49.22 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=58.1
Q ss_pred EEEEEeccCCChHHHHHHHHhccc--ccccCCCCEEEEEE---------------eCCCCC---HHHHHHHHHHHhccCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK--AVADSKFDVKAWVC---------------VSDNFD---VFNILKALLESITSAA 262 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~~f~~~~wv~---------------v~~~~~---~~~~~~~il~~l~~~~ 262 (661)
.+++|.|+.|.|||||.+.+..-. .. ....++++ +.+... ...+...+.-....
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~----~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-- 109 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLG----VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-- 109 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCC----CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--
Confidence 489999999999999999997753 21 22222221 111110 01111111100000
Q ss_pred CCCCCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhccccc-CCCCcEEEEEeCCh
Q 006107 263 SDLNTLNEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLA-AAPNSKMIITTRHS 322 (661)
Q Consensus 263 ~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTr~~ 322 (661)
.....-+...-.+.+.+..++-++++|+.-+ .+......+...+.. ...|..||++|.+.
T Consensus 110 ~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 0112222233345556666778999999754 233344444444332 12377788888775
No 386
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.08 E-value=0.12 Score=57.57 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..++|+|+.|+|||||++.+..-..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999976543
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.11 Score=54.94 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=45.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
..+++++|+.|+||||++..+........ ....+.+++... .....+.+....+.++.+.....+..++...+.. +.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 35899999999999999987765422111 223334444322 2233444555555554433333333333333332 33
Q ss_pred CceEEEEEeCC
Q 006107 281 GKRFLLVLDDV 291 (661)
Q Consensus 281 ~kr~LlVlDdv 291 (661)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 35666765
No 388
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.06 E-value=0.11 Score=51.88 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=48.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHhccCC---CCCCCH-HHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV--FNILKALLESITSAA---SDLNTL-NEVQVQ 274 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~il~~l~~~~---~~~~~~-~~l~~~ 274 (661)
..+++.++|++|+||||++..++..... .-..+.+++... +.. .+-+....+..+.+. ....+. ......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 4579999999999999999888765432 223555665442 222 233344444443221 111122 222233
Q ss_pred HHhhcCCceEEEEEeCCCC
Q 006107 275 LKKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~ 293 (661)
+........-++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4433334445788887654
No 389
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.13 Score=58.65 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=70.2
Q ss_pred ccccchhhHHHHHHHHhcCCC---C-CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSD---H-ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~---~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.++|-++.+..|.+.+..... . .+.....+.|+.|+|||-||+.+.... -+ ..+..+-++.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--Fg-se~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--FG-SEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--cC-CccceEEechhh------hhh-
Confidence 467888888888888866321 1 245678889999999999999987652 12 333444444433 222
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceE-EEEEeCCCCCChhhHhhhhccc
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRF-LLVLDDVRNEDYSLWVDLKAPF 306 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l 306 (661)
...+.+..+.-.. .+....|.+.++.++| +|+||||+.++.....-+...+
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 2233222221111 1122356666666766 6778999998876666555554
No 390
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.03 E-value=0.25 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||++.++.-
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999765
No 391
>PHA00729 NTP-binding motif containing protein
Probab=95.03 E-value=0.021 Score=54.61 Aligned_cols=25 Identities=48% Similarity=0.570 Sum_probs=21.8
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
No 392
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.025 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++.|.||+|+|||||++.++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999986
No 393
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.11 Score=58.63 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=33.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESIT 259 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~ 259 (661)
..+++++|+.|+||||.+..++....... ....+..++... .....+.++...+.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~RigA~eQL~~~a~~~g 242 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIGALEQLRIYGRILG 242 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchHHHHHHHHHHHhCC
Confidence 36999999999999999988886643221 122444454321 1123344454444444
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.93 E-value=0.11 Score=46.82 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998764
No 395
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.018 Score=51.88 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.6
Q ss_pred EEEEeccCCChHHHHHHHHh
Q 006107 204 VIPIVGMGGIGKTTLAREVY 223 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~ 223 (661)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 396
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.14 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999754
No 397
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.017 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.567 Sum_probs=22.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+|+|-||=|+||||||+.+.++..
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 5899999999999999999998755
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.88 E-value=0.096 Score=56.27 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=47.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
.|++++|+.|+||||++..++.....+. ....+..++... .....+.+....+.++.......+..+....+ ..+.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 5999999999999999999987653332 122344555432 22344555555555543322222222222222 22344
Q ss_pred ceEEEEEeCCC
Q 006107 282 KRFLLVLDDVR 292 (661)
Q Consensus 282 kr~LlVlDdv~ 292 (661)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777764
No 399
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.024 Score=53.62 Aligned_cols=27 Identities=37% Similarity=0.585 Sum_probs=23.7
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+.+|+|.|.+|+||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999987643
No 400
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.86 E-value=0.02 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999987753
No 401
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.85 E-value=0.011 Score=31.37 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=5.9
Q ss_pred ccceeecccccccccCC
Q 006107 617 NWNMAIWCKHTYLVTGS 633 (661)
Q Consensus 617 ~Lq~L~l~~c~~l~~LP 633 (661)
+|++|+|++|. +++||
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 44555555543 44444
No 402
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.85 E-value=0.091 Score=55.52 Aligned_cols=87 Identities=22% Similarity=0.201 Sum_probs=47.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC-------CCCCCCHHHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA-------ASDLNTLNEV---- 271 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~-------~~~~~~~~~l---- 271 (661)
..++|.|..|+|||||++.+..... ....++...-...-.+.++....+..-... ..+.......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 3789999999999999998887633 122333222222334445555444332111 1111122111
Q ss_pred -HHHHHhhc--CCceEEEEEeCCCC
Q 006107 272 -QVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 272 -~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
...+.+++ +++++||++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 58999999999843
No 403
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.14 Score=56.47 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=61.3
Q ss_pred ccccchhhHHHHHHHHhcC--------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHH
Q 006107 178 EVFGREEDKAKILDMVNTS--------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFN 249 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 249 (661)
++=|-++-+.+|.+-+.-+ .+-....=|.++|++|.|||-||++|+.... .-|++|-.+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----H
Confidence 4557777777887766431 1112234688999999999999999987532 234555543 2
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC
Q 006107 250 ILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 250 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 294 (661)
++... ++ ...++..+...+.-..++++|+||.+++.
T Consensus 741 LLNMY---VG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 LLNMY---VG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHH---hc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22221 11 23344555566666789999999999874
No 404
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.13 Score=52.84 Aligned_cols=82 Identities=26% Similarity=0.292 Sum_probs=52.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.+|.|-|.||||||||.-++..+... .- .+++|+-.+ +..++ +--+..++.... ...+++.....+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~---~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAK---RG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHh---cC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 58999999999999999999887542 22 566665433 33332 223344543322 23445555555444
Q ss_pred hcCCceEEEEEeCCCCC
Q 006107 278 AVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l~~kr~LlVlDdv~~~ 294 (661)
.++-++|+|-+...
T Consensus 167 ---~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 ---EKPDLVVIDSIQTL 180 (456)
T ss_pred ---cCCCEEEEecccee
Confidence 68889999998653
No 405
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.83 E-value=0.11 Score=58.97 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=56.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQL 275 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 275 (661)
.-+++-|+|++|+|||||+.+++.... . .-..++|++..+.++.. .+++++.... ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~-~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--A-AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--H-cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 346888999999999999988765432 1 33567999888777743 4555554322 233445555555
Q ss_pred HhhcC-CceEEEEEeCCCC
Q 006107 276 KKAVD-GKRFLLVLDDVRN 293 (661)
Q Consensus 276 ~~~l~-~kr~LlVlDdv~~ 293 (661)
...+. ++.-|||+|.+-.
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 55553 4567999999863
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.82 E-value=0.017 Score=54.95 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|+|.|++|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 407
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.82 E-value=0.19 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999997653
No 408
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.81 E-value=0.029 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.5
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999987654
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.023 Score=54.20 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=57.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCC---CCHHHHHHHHHhh-
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDL---NTLNEVQVQLKKA- 278 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~- 278 (661)
.++.|.|+.|.||||+.+.+.--.-.. + ...++... .....+...+...+....... .....-...+...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la--~--~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA--Q--IGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH--H--cCCCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 589999999999999998875332110 0 01111110 000122222332222211101 1111111112222
Q ss_pred -cCCceEEEEEeCCCCC-ChhhH----hhhhcccccCCCCcEEEEEeCChhhhcccC
Q 006107 279 -VDGKRFLLVLDDVRNE-DYSLW----VDLKAPFLAAAPNSKMIITTRHSDVASTMG 329 (661)
Q Consensus 279 -l~~kr~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~gs~ilvTTr~~~v~~~~~ 329 (661)
+..++-|+++|+...- +..+. ..+...+.. .|+.+|++|.....+....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2356789999998542 12221 122333332 3889999999887776543
No 410
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.77 E-value=0.042 Score=48.83 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=28.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD 243 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 243 (661)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~--g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR--GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc--CCceEEEEEccC
Confidence 479999999999999999999986533 455555666554
No 411
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.75 E-value=0.021 Score=52.55 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEeccCCChHHHHHHHHhccc
Q 006107 205 IPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|.|+|++|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998775
No 412
>PRK00625 shikimate kinase; Provisional
Probab=94.73 E-value=0.02 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999775
No 413
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.73 E-value=0.047 Score=49.38 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 184 EDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 184 ~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+.+++|.++|.. ++++++|+.|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~-------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457778888743 488999999999999999998763
No 414
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.72 E-value=0.053 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999764
No 415
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.70 E-value=0.22 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++++.|+.|+|||||.+.+..-.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999997754
No 416
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.68 E-value=0.087 Score=51.75 Aligned_cols=110 Identities=16% Similarity=0.292 Sum_probs=62.9
Q ss_pred CccccchhhHHHHHHHHhc---CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNT---SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
..++|-.-.++.|+..+.+ ......+-+++.+|.+|+||.-.++.+.++....+-+- .....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------------~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------------PFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------------hhHHH
Confidence 3467776666667666654 22345677999999999999999998887643222000 11111
Q ss_pred HHHHhccCCCCCCCH----HHHHHHHHhhc-CCceEEEEEeCCCCCChhhHhhhh
Q 006107 254 LLESITSAASDLNTL----NEVQVQLKKAV-DGKRFLLVLDDVRNEDYSLWVDLK 303 (661)
Q Consensus 254 il~~l~~~~~~~~~~----~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~ 303 (661)
+.....- +....+ +++...++..+ .-+|.|+|+|+++.....-.+.+.
T Consensus 147 fvat~hF--P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lk 199 (344)
T KOG2170|consen 147 FVATLHF--PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLK 199 (344)
T ss_pred hhhhccC--CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHh
Confidence 1111111 111122 23333333333 367899999999987654444443
No 417
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.67 E-value=0.16 Score=52.69 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=32.5
Q ss_pred HHHhhcCCceEEEEEeCCCCC-ChhhHhhhhcccccC--CCCcEEEEEeCChhhhcc
Q 006107 274 QLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLAA--APNSKMIITTRHSDVAST 327 (661)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTr~~~v~~~ 327 (661)
.+.+.+...+-+|++|+.-+. |...-..+...+..- ..|..||++|.+..+...
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 455666777889999997553 333333333333321 236788888887766543
No 418
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.67 E-value=0.025 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEeccCCChHHHHHHHHhcccc
Q 006107 205 IPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
|.|+|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987643
No 419
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.67 E-value=0.28 Score=48.36 Aligned_cols=121 Identities=13% Similarity=0.215 Sum_probs=77.2
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.+.|+|-.. ..++..++.... ..+ ..+.|+|..|+|||+-++++++.. ...+-+..++.++...+...+.
T Consensus 71 ~~~~l~tkt-~r~~~~~~~~A~-k~g-~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 71 APDFLETKT-VRRIFFRTRPAS-KTG-SLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred cccccccch-hHhHhhhhhhhh-hcC-ceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHH
Confidence 345666433 233444443321 122 378899999999999999998752 2334445666677776666666
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhccccc
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLA 308 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (661)
....... ..........+...+.+..-+++.|+.+......++.++.....
T Consensus 141 ~~~~~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 141 AAAFGAT--DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHhccc--chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 6555433 23334455556666688889999999998877777777665443
No 420
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.12 Score=54.63 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC-------CCCCCCHH-----H
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA-------ASDLNTLN-----E 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~-------~~~~~~~~-----~ 270 (661)
..++|+|..|+|||||++.++..... ...++.+.-.+.....+++...+..-+.. ..+..... .
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 37899999999999999999876432 12333332233356666666555442211 11111111 1
Q ss_pred HHHHHHhhc--CCceEEEEEeCCCCC
Q 006107 271 VQVQLKKAV--DGKRFLLVLDDVRNE 294 (661)
Q Consensus 271 l~~~l~~~l--~~kr~LlVlDdv~~~ 294 (661)
....+.+++ ++++.||++||+-.-
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHH
Confidence 122233333 489999999998553
No 421
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.66 E-value=0.025 Score=52.92 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++++|+|++|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999875
No 422
>PRK05922 type III secretion system ATPase; Validated
Probab=94.65 E-value=0.18 Score=53.40 Aligned_cols=85 Identities=13% Similarity=0.270 Sum_probs=48.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCC-------CCCCHHH-----
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAAS-------DLNTLNE----- 270 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~-------~~~~~~~----- 270 (661)
.++|+|+.|+|||||.+.+.+... .+..+++.+.. .....+.+.+.......... +......
T Consensus 159 rigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 159 RIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred EEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 689999999999999999987632 23333333333 23344555555433322111 1111111
Q ss_pred HHHHHHhhc--CCceEEEEEeCCCC
Q 006107 271 VQVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 271 l~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
....+.+++ +++++|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233443 58999999999943
No 423
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.65 E-value=0.065 Score=54.33 Aligned_cols=84 Identities=21% Similarity=0.194 Sum_probs=50.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLK 276 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 276 (661)
-+++-|+|+.|+||||||.++..... . .-..++|++....++... ++.++.... ..+..++....+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q--~-~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQ--K-QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--H-TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhh--c-ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 35899999999999999999887643 2 445789999988776643 333333221 1234455545554
Q ss_pred hhcC-CceEEEEEeCCCC
Q 006107 277 KAVD-GKRFLLVLDDVRN 293 (661)
Q Consensus 277 ~~l~-~kr~LlVlDdv~~ 293 (661)
..++ +.--++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 5443 4445889998855
No 424
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.65 E-value=0.081 Score=57.94 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|....++++.+.+..-... ...|.|.|.+|+||+++|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s--~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARS--SAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC--CCcEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999988887653321 235789999999999999999875
No 425
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.64 E-value=0.025 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..|.|+|++|+||||+|+.+....
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998763
No 426
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=1 Score=45.15 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=47.7
Q ss_pred CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC-hhhhcccCC-CceeecCCCChHhHHHHHHH
Q 006107 280 DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH-SDVASTMGP-IEHYNLKSLLDDDCWSIFIK 350 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~-~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~ 350 (661)
.+++-++|+||++......++.++..+-...+++.+|++|.+ ..+...+.. -..+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 356679999999999888899998888766666777776655 344443322 25566766 66666666643
No 427
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.61 E-value=0.021 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.61 E-value=0.018 Score=66.25 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=85.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc-------------cccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA-------------VADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTL 268 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~-------------~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~ 268 (661)
.+++.|+|+.+.||||+.+.+.-..- ..-+.|+. ++..++..-++..-+..+... .
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~----------m 395 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGH----------M 395 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHH----------H
Confidence 46889999999999999988743210 00012222 223333222222111111111 1
Q ss_pred HHHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc--CCCCcEEEEEeCChhhhcccCCCce---eecCCCChH
Q 006107 269 NEVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA--AAPNSKMIITTRHSDVASTMGPIEH---YNLKSLLDD 342 (661)
Q Consensus 269 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~~~~~~~---~~l~~L~~~ 342 (661)
......+.. + ..+.|+++|..-.. ++.....+...+.. ...|+.+|+||....+......... ..+. ++.
T Consensus 396 ~~~~~Il~~-~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~- 471 (782)
T PRK00409 396 TNIVRILEK-A-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDE- 471 (782)
T ss_pred HHHHHHHHh-C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-
Confidence 111222222 2 46789999998753 32333333222111 1347899999998776654322211 1111 111
Q ss_pred hHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHcc
Q 006107 343 DCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDILDS 403 (661)
Q Consensus 343 e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~~~ 403 (661)
+. +-..+-+..+.+. ...|-.|++++ |+|-.+..-|.-+.......+..++.+
T Consensus 472 ~~--l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~ 524 (782)
T PRK00409 472 ET--LRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIAS 524 (782)
T ss_pred Cc--CcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 11 1001111111111 22355666666 888888888877766544455555443
No 429
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.60 E-value=0.022 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3679999999999999999765
No 430
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.59 E-value=0.031 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.4
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999875
No 431
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.59 E-value=0.38 Score=43.19 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEeccCCChHHHHHHHHhcc
Q 006107 205 IPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~ 225 (661)
|+|+|++|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999776
No 432
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.59 E-value=0.17 Score=52.89 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.|+.|+|||||.+.+.--
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 38999999999999999999764
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.58 E-value=0.11 Score=51.70 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD 243 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 243 (661)
-.++.|.|++|+|||++|.++...... .-..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecC
Confidence 468999999999999999998654321 234678888764
No 434
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.57 E-value=0.0023 Score=67.55 Aligned_cols=94 Identities=9% Similarity=0.005 Sum_probs=71.1
Q ss_pred CceEEeeccccCCC-CC---chhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcccccccc-cccccceeeccccc
Q 006107 555 LLRTFLPFCIRGGP-NT---SYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHT 627 (661)
Q Consensus 555 ~LrsL~~~~~~~~~-~~---~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~ 627 (661)
-|+.|++.++.... |. .......|+.....+..+|.. .|..||-|+++.+.+..||+.. .|. |-.||++ |+
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfS-cN 221 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFS-CN 221 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecc-cC
Confidence 57888887654321 11 122334566666777888888 9999999999999999999998 664 7889997 79
Q ss_pred ccccCCccccccccccccccccc
Q 006107 628 YLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 628 ~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
++..||-.+.+|+.||.+.+-.|
T Consensus 222 kis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ceeecchhhhhhhhheeeeeccC
Confidence 99999999999999887665444
No 435
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.17 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+++|+|+.|.|||||.+.+.....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999977643
No 436
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.57 E-value=0.049 Score=55.28 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=43.2
Q ss_pred cCccccchhhHHHHHHHHhcCCC--CCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 176 EHEVFGREEDKAKILDMVNTSSD--HANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...|+|.++.++++++.+...+. +..-+++.++||.|.||||||..+.+-.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999976432 34568999999999999999999877543
No 437
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.56 E-value=0.28 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.++-|.++|++|.|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999998744
No 438
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.56 E-value=0.24 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|.|||||++.+....
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997654
No 439
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.53 E-value=0.046 Score=63.85 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=97.3
Q ss_pred EEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCCC----CHH--HHHHHHHHHhccCCCCCCCHHHHHHHHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDNF----DVF--NILKALLESITSAASDLNTLNEVQVQLK 276 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~----~~~--~~~~~il~~l~~~~~~~~~~~~l~~~l~ 276 (661)
-+.|+|.+|.||||+.+.+.-....+. ..=+..+|+.+.... ... .+..-+...+.... ..........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHHH
Confidence 688999999999999988754322111 011233444433111 011 12222222222111 1111222225
Q ss_pred hhcCCceEEEEEeCCCCCChhhHhhh---hcccccCCCCcEEEEEeCChhhhcccCCCceeecCCCChHhHHHHHH----
Q 006107 277 KAVDGKRFLLVLDDVRNEDYSLWVDL---KAPFLAAAPNSKMIITTRHSDVASTMGPIEHYNLKSLLDDDCWSIFI---- 349 (661)
Q Consensus 277 ~~l~~kr~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~ilvTTr~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~---- 349 (661)
+.+...++++++|.++......-... ...+.+.-+.+++|+|+|....-........+++..+.++.......
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~ 379 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWL 379 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHH
Confidence 67788999999999876532211111 22233345688999999976655544445556666666665543333
Q ss_pred ----HhhcCCCCCCcchhhHHH---HHHHHHHcCCChHHHHHHHHHhccC------CHHHHHHHHc
Q 006107 350 ----KHALEGRDLSAHQISESF---RKKVVGKCRGLPLAAKTLEGLLRTT------RHAAWDDILD 402 (661)
Q Consensus 350 ----~~~~~~~~~~~~~~~~~~---~~~I~~~~~G~PLai~~~~~~l~~~------~~~~w~~~~~ 402 (661)
+..++............+ ..+-.+.....|+.+.+.+..-... ..+-++...+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~ 445 (824)
T COG5635 380 DAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVD 445 (824)
T ss_pred HHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHH
Confidence 111111111100011111 1223344488899999888554421 4445555544
No 440
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.52 E-value=0.025 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999765
No 441
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.50 E-value=0.28 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|.|||||++.+..-.
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 379999999999999999986543
No 442
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.49 E-value=0.4 Score=43.23 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHhccCCC------CCCCHHHHHHHHHhhcCCceEEEEEeCCC-CCChhhHhhhhccc--ccCCCCcEEE
Q 006107 246 DVFNILKALLESITSAAS------DLNTLNEVQVQLKKAVDGKRFLLVLDDVR-NEDYSLWVDLKAPF--LAAAPNSKMI 316 (661)
Q Consensus 246 ~~~~~~~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l--~~~~~gs~il 316 (661)
+..+..+..+.+++.... ....-++....+.+.+...+-+++-|.-- +.+...-+.+...+ .+...|+..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 455556677776654321 23344566667888888888888888642 22222222332222 2346788888
Q ss_pred EEeCChhhhcccCC
Q 006107 317 ITTRHSDVASTMGP 330 (661)
Q Consensus 317 vTTr~~~v~~~~~~ 330 (661)
+.|.++.++..+..
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 88898888876543
No 443
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.48 E-value=0.034 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...+.+.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34578999999999999999999754
No 444
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.46 E-value=0.2 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|.|||||.+.+.--
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999764
No 445
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.45 E-value=0.17 Score=50.02 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=54.5
Q ss_pred EEEEeccCCChHHHHHHHHhccccc-ccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccCC-------CCCCCHHH----
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAV-ADSKFDVKAWVCVSDNF-DVFNILKALLESITSAA-------SDLNTLNE---- 270 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~---- 270 (661)
-++|.|.+|+|||+|+..+.++... ..+.-+.++++-+.+.. ...++..++...-.... .+......
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 5789999999999999998876431 11134678888887764 45566666654311110 11111111
Q ss_pred -HHHHHHhhc---CCceEEEEEeCCCC
Q 006107 271 -VQVQLKKAV---DGKRFLLVLDDVRN 293 (661)
Q Consensus 271 -l~~~l~~~l---~~kr~LlVlDdv~~ 293 (661)
....+.+++ .++++|+++||+-.
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112234444 37899999999843
No 446
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.44 E-value=0.16 Score=53.89 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=49.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccC-------CCCCCCHHHH---
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITSA-------ASDLNTLNEV--- 271 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~~l--- 271 (661)
..++|.|..|+|||||.+.+.+.. ..+..++..+.+. ..+.+++.+....-... ..+.......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 378999999999999999998753 3444555555543 34445555543211000 0111112111
Q ss_pred --HHHHHhhc--CCceEEEEEeCCC
Q 006107 272 --QVQLKKAV--DGKRFLLVLDDVR 292 (661)
Q Consensus 272 --~~~l~~~l--~~kr~LlVlDdv~ 292 (661)
...+.+++ +++++||++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 11233333 5889999999994
No 447
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.036 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++++|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999887654
No 448
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.43 E-value=0.36 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|.|||||++.+..-.
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999996643
No 449
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.42 E-value=0.24 Score=50.57 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=48.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccC-------CCCCCCHHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSA-------ASDLNTLNE---- 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~-------~~~~~~~~~---- 270 (661)
..++|+|+.|+|||||.+.+.+... -+..+..-+.. ..+..++....+..-... ..+......
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 3789999999999999999987632 23334444443 334555555554432111 111111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCCCC
Q 006107 271 -VQVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 271 -l~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
....+.+++ +++.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111222333 58999999999843
No 450
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.42 E-value=0.026 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987643
No 451
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.40 E-value=0.14 Score=54.41 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=53.2
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCCHHH-----
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITSA-------ASDLNTLNE----- 270 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~----- 270 (661)
-++|.|.+|+|||||+..+....... +-+.++++-+.+.. .+.+++.++...-... ..+......
T Consensus 146 R~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 146 KIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 68899999999999999887664322 22466777776543 4556666665431111 111222221
Q ss_pred HHHHHHhhc---CCceEEEEEeCCC
Q 006107 271 VQVQLKKAV---DGKRFLLVLDDVR 292 (661)
Q Consensus 271 l~~~l~~~l---~~kr~LlVlDdv~ 292 (661)
....+.+++ +++++||++|++-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 122344444 6899999999984
No 452
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.40 E-value=0.1 Score=56.30 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEE-EEEeCCCCC-HHHHHHHHHHHhccCCCCC
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKA-WVCVSDNFD-VFNILKALLESITSAASDL 265 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~v~~~~~-~~~~~~~il~~l~~~~~~~ 265 (661)
++++++..-..+ .-..|+|++|+|||||++.+.+..... +-++.+ .+-|.+... +.++.+.+-..+-....+.
T Consensus 405 RvIDll~PIGkG---QR~LIvgpp~aGKTtLL~~IAn~i~~n--~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGKG---QRGLIVSPPKAGKTTILQNIANAITTN--NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccccC---CEeEEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCC
Confidence 455655443211 257899999999999999998854321 334433 344444332 2233222211111111111
Q ss_pred CCH-----HHHHHHHHhhc--CCceEEEEEeCCC
Q 006107 266 NTL-----NEVQVQLKKAV--DGKRFLLVLDDVR 292 (661)
Q Consensus 266 ~~~-----~~l~~~l~~~l--~~kr~LlVlDdv~ 292 (661)
... ..+.-.+.+++ .++.+||++|++-
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111 11222233333 6899999999984
No 453
>PRK04328 hypothetical protein; Provisional
Probab=94.40 E-value=0.14 Score=50.57 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=30.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN 244 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 244 (661)
-.++.|.|++|+|||+|+.++..... + .-..++|++....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~-~--~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL-Q--MGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-h--cCCcEEEEEeeCC
Confidence 45899999999999999998765522 1 3456788887663
No 454
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.37 E-value=0.1 Score=49.37 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEeccCCChHHHHHHHHhcc
Q 006107 205 IPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~ 225 (661)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 455
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.37 E-value=0.29 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|+|||||++.+..-.
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999997654
No 456
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.36 E-value=0.026 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 457
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.35 E-value=0.053 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=20.1
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999873
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.35 E-value=0.029 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.4
Q ss_pred EEEeccCCChHHHHHHHHhcc
Q 006107 205 IPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.34 E-value=0.021 Score=30.27 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=11.9
Q ss_pred CcceeecCCCCCccccc
Q 006107 594 KCLQFLRPKYTSEREKK 610 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP 610 (661)
.+|+.|+|++|.+++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999998
No 460
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.34 E-value=0.076 Score=52.95 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=37.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.-+++.|+|.+|+|||+++.++..... . ....++||+.... ..++...+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~--~-~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA--R-EGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH--h-cCCcEEEEEecCC--HHHHHHHHH
Confidence 346999999999999999999887643 2 5678999988764 444444443
No 461
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.33 E-value=0.045 Score=57.44 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+.|.|+||.|||+|.+.+.+..+
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 35789999999999999999987654
No 462
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.31 E-value=0.15 Score=46.97 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=43.7
Q ss_pred EEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCC---CCCHHHHHHHHHhhcCC
Q 006107 205 IPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASD---LNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~~~l~~ 281 (661)
+.|.|.+|+|||++|.++... ....++++.-...++.+ +...+.......... ......+...+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-
Confidence 678999999999999998754 22356677666666543 333333322212111 12222333333222 2
Q ss_pred ceEEEEEeCC
Q 006107 282 KRFLLVLDDV 291 (661)
Q Consensus 282 kr~LlVlDdv 291 (661)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337899986
No 463
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.31 E-value=0.32 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..++|+|+.|.|||||++.+..-..
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4899999999999999999976543
No 464
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.30 E-value=0.068 Score=54.74 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc--CCCCcEEEEEeCChhhhcccCCCc
Q 006107 272 QVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA--AAPNSKMIITTRHSDVASTMGPIE 332 (661)
Q Consensus 272 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~~~~~~ 332 (661)
...|.+.+.++.-+++.|.+... |...-..+...+.. ...|+.+++.|+.+.+.+.+.+..
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 34567778888889999987542 21222223333322 235777888777788877765543
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.29 E-value=0.076 Score=55.19 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=58.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|.|+.|+||||+.+.+.+... . .....++. +.++... ........+...... .........++..+...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~--~-~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN--K-NAAGHIIT-IEDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC--c-CCCCEEEE-EcCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccC
Confidence 4799999999999999998876532 1 23344443 2222111 000000000100001 11123455567778888
Q ss_pred eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 283 RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
+=.|++|++.+. ..+..... ....|..++.|.....
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCC
Confidence 889999999764 33333222 2345666776666433
No 466
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.28 E-value=0.025 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=16.7
Q ss_pred EEEeccCCChHHHHHHHHhccc
Q 006107 205 IPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|.|+|.+|+|||++|+.+....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999998763
No 467
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.19 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+.--
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999764
No 468
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.28 E-value=0.071 Score=59.54 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=54.5
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
-..++|.++.++.|...+... +.+.|+|++|+||||+|+.+.+... .. +++..+|..- ...+...+++.+.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~------~~~l~~G~~G~GKttla~~l~~~l~-~~-~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR------RHVMMIGSPGTGKSMLAKAMAELLP-KE-ELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC------CeEEEECCCCCcHHHHHHHHHHHcC-hH-hHHHheEeeC-CCcchHHHHHHHH
Confidence 356899998888888777543 2588999999999999999987632 22 4567778655 4446667777776
Q ss_pred HHhcc
Q 006107 256 ESITS 260 (661)
Q Consensus 256 ~~l~~ 260 (661)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 55543
No 469
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.27 E-value=0.039 Score=51.35 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|.|+|.+|+||||+|+.+.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987653
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.27 E-value=0.04 Score=46.04 Aligned_cols=21 Identities=52% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEEeccCCChHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVY 223 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~ 223 (661)
..++|+|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 471
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.26 E-value=0.14 Score=58.28 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=71.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|....+.++.+.+..-... . ..|.|+|..|+||+++|+.+.+...... ..-+.|++..-. ...+..+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~-~-~pvli~Ge~GtGK~~~A~~ih~~s~r~~---~pfv~vnc~~~~-~~~~~~elfg 398 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKS-S-FPVLLCGEEGVGKALLAQAIHNESERAA---GPYIAVNCQLYP-DEALAEEFLG 398 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCc-C-CCEEEECCCCcCHHHHHHHHHHhCCccC---CCeEEEECCCCC-hHHHHHHhcC
Confidence 35789998888888877653322 2 2477999999999999999987532111 122334443322 2222223322
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEeCCh
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITTRHS 322 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTr~~ 322 (661)
...... .... ...+. ....=.|+||++..........+...+..+. ...+||.||...
T Consensus 399 ~~~~~~-~~~~----~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 399 SDRTDS-ENGR----LSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCcCc-cCCC----CCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 110000 0000 00010 1123469999999987666666666553221 135677777643
No 472
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.21 Score=46.70 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
-.|.++.||+|+||||+.+.+-+
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHh
Confidence 46999999999999999988743
No 473
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.25 E-value=0.21 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 38999999999999999999664
No 474
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.25 E-value=0.27 Score=52.39 Aligned_cols=53 Identities=11% Similarity=0.296 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhc---CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE
Q 006107 183 EEDKAKILDMVNT---SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC 240 (661)
Q Consensus 183 ~~e~~~l~~~L~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 240 (661)
..-+.++..||.+ -....+-+++.|+||+|+||||-++.++... .+..+-|.+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~N 143 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWSN 143 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----CceeeeecC
Confidence 3456778888872 1112345699999999999999999988652 455666763
No 475
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.24 E-value=0.19 Score=53.33 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=50.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCCHHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITSA-------ASDLNTLNE---- 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~---- 270 (661)
..++|+|..|+|||||++.+++... .+..+++-+.+.. .+.++..+.+..-+.. ..+......
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 4789999999999999999987632 3455556665544 3445554444331111 111111211
Q ss_pred -HHHHHHhhc--CCceEEEEEeCCCC
Q 006107 271 -VQVQLKKAV--DGKRFLLVLDDVRN 293 (661)
Q Consensus 271 -l~~~l~~~l--~~kr~LlVlDdv~~ 293 (661)
....+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 111233333 58999999999943
No 476
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.23 E-value=0.2 Score=54.84 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+...+.++.+.+..... .-..|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~--~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR--SSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc--cCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3589998888888777754321 22357899999999999999998753
No 477
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.22 E-value=0.15 Score=53.97 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=22.7
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+.+|.++|++|+||||++..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999988876543
No 478
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.21 E-value=0.044 Score=49.34 Aligned_cols=35 Identities=31% Similarity=0.224 Sum_probs=26.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC 240 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 240 (661)
.+|-|+|.+|+||||||+.+.+..... -..+++++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~---g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR---GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT---TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEec
Confidence 589999999999999999998875532 23455554
No 479
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.20 E-value=0.32 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|.|||||.+.+..-.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999997653
No 480
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.20 E-value=0.2 Score=56.40 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|.|||||++.+..-.
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 379999999999999999996653
No 481
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.19 E-value=0.32 Score=44.32 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEE
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVC 240 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 240 (661)
.+++|.|++|.|||||...+.--.. .-...+|++
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i~ 59 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET----PASGEILIN 59 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC----CCCceEEEc
Confidence 4899999999999999999865322 123567775
No 482
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.19 E-value=0.32 Score=56.24 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|+|||||++.+..-.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999996543
No 483
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.18 E-value=0.4 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||++.+..-.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998753
No 484
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.18 E-value=0.049 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEeccCCChHHHHHHHHhcc
Q 006107 205 IPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~ 225 (661)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999764
No 485
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.18 E-value=0.2 Score=53.04 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=47.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhcc-------CCCCCCCHHH----
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLESITS-------AASDLNTLNE---- 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~---- 270 (661)
..++|.|.+|+|||||.+.+.+... .+..+...+.... ...++...+...-.. ...+......
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 3789999999999999998887532 2344445555432 344444444332110 0111111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCCC
Q 006107 271 -VQVQLKKAV--DGKRFLLVLDDVR 292 (661)
Q Consensus 271 -l~~~l~~~l--~~kr~LlVlDdv~ 292 (661)
....+.+++ +++++|+++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 111223333 5899999999984
No 486
>PRK13409 putative ATPase RIL; Provisional
Probab=94.17 E-value=0.23 Score=55.54 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEE-----EeCCC------CCHHHHHH-------------HHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWV-----CVSDN------FDVFNILK-------------ALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv-----~v~~~------~~~~~~~~-------------~il~~l 258 (661)
.+++|+|+.|+|||||++.++...... .+.+++ .+.+. .++.+.+. ++++.+
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~----~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPD----EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 389999999999999999998653321 122211 11221 12222221 222222
Q ss_pred ccCC------CCCCCHHHHHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhccccc--CCCCcEEEEEeCChhhhcc
Q 006107 259 TSAA------SDLNTLNEVQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLA--AAPNSKMIITTRHSDVAST 327 (661)
Q Consensus 259 ~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~ 327 (661)
+... ...+.-+...-.+...+...+-+++||+--. .|...-..+...+.. ...|..||++|.+...+..
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 2110 0111122333345666777788999998644 233333333333332 1236678888887665543
No 487
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.16 E-value=0.087 Score=56.26 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=40.7
Q ss_pred hhHhhhhcCCcccCcC---CCCcceeecCCCCCccccccc-c-cccccceeecccccccccCCccc-ccccccccccccc
Q 006107 576 EAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGT 649 (661)
Q Consensus 576 ~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~ 649 (661)
+.|+.....+.++|.. .=.+++||+|+++.|+.+-.. + .|.+|-+|.|+. +.+..||.-+ ++|.+|+.+++..
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccc
Confidence 4444433444444444 335566666666666665553 3 666666666665 5566666543 3366665555544
Q ss_pred c
Q 006107 650 H 650 (661)
Q Consensus 650 ~ 650 (661)
|
T Consensus 231 N 231 (873)
T KOG4194|consen 231 N 231 (873)
T ss_pred c
Confidence 4
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.044 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+...+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998753
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.15 E-value=0.038 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7889999999999999999765
No 490
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.14 E-value=0.022 Score=60.43 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=41.7
Q ss_pred hcCCcccCcC-CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccccccccc
Q 006107 582 FGNISAVDET-LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDF 647 (661)
Q Consensus 582 ~~~l~~lP~~-~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~ 647 (661)
...+..+|.. =..-|+.|=+++++++.+|+.| -+..|..||.+. ..+.+||..++.|.+|+.+..
T Consensus 130 ~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred cchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHH
Confidence 3445556665 4445666666777777777777 777777777764 457777777777776664444
No 491
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.14 E-value=0.25 Score=53.24 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC---
Q 006107 187 AKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS--- 263 (661)
Q Consensus 187 ~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--- 263 (661)
..+-+.|...- ..-.++.|.|++|+|||||+.+++..... .-..++|++..+. ..++... ++.++....
T Consensus 67 ~~LD~~LgGGi--~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~ 138 (446)
T PRK11823 67 GELDRVLGGGL--VPGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLY 138 (446)
T ss_pred HHHHHHhcCCc--cCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEE
Confidence 34555553321 22358999999999999999999876431 2236778776543 3333222 344432111
Q ss_pred --CCCCHHHHHHHHHhhcCCceEEEEEeCCCC
Q 006107 264 --DLNTLNEVQVQLKKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 264 --~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 293 (661)
...+.+.+...+.+ .+.-++|+|.+..
T Consensus 139 ~~~e~~l~~i~~~i~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 139 LLAETNLEAILATIEE---EKPDLVVIDSIQT 167 (446)
T ss_pred EeCCCCHHHHHHHHHh---hCCCEEEEechhh
Confidence 12344444444432 3556899999854
No 492
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.13 E-value=0.038 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|+|++|+|||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999875
No 493
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.12 E-value=0.041 Score=52.99 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=25.1
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVA 229 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 229 (661)
+.+..|.++||+|+||||..+.++.+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 456688899999999999999998876543
No 494
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.12 E-value=0.078 Score=49.90 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=29.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
++++|-+..+..+.-..... .-+.++|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC------CCeEEECCCCCCHHHHHHHHHH
Confidence 46788887777766555431 3688999999999999999843
No 495
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.11 E-value=0.25 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|.|+.|+|||||.+.++--
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999754
No 496
>PRK13949 shikimate kinase; Provisional
Probab=94.11 E-value=0.033 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998763
No 497
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.11 E-value=0.041 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999876
No 498
>PRK14527 adenylate kinase; Provisional
Probab=94.09 E-value=0.039 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|.|+|++|+||||+|+.+.+...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999986643
No 499
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=94.09 E-value=0.45 Score=53.58 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+.|.|||||++.+..-.
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCC
Confidence 479999999999999999986543
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.07 E-value=0.051 Score=50.94 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=28.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS 242 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~ 242 (661)
+++.|+|+.|+|||||++.+..... ..|...++.+..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~---~~~~~~v~~TTR 39 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP---DKFGRVVSHTTR 39 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST---TTEEEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc---cccccceeeccc
Confidence 5889999999999999999987633 256555555543
Done!