Query 006107
Match_columns 661
No_of_seqs 403 out of 3398
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.4E-50 2.2E-54 442.0 22.8 316 180-515 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-39 7.8E-44 394.6 26.1 313 172-513 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.5E-39 5.1E-44 363.0 19.2 284 178-506 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-35 3.8E-40 333.0 24.3 303 176-510 123-449 (591)
5 2qen_A Walker-type ATPase; unk 99.7 5.5E-17 1.9E-21 168.8 21.9 291 175-507 10-349 (350)
6 1w5s_A Origin recognition comp 99.7 9.6E-17 3.3E-21 171.0 20.2 315 177-502 22-387 (412)
7 2fna_A Conserved hypothetical 99.7 1.9E-16 6.4E-21 165.2 21.2 290 175-506 11-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.7 7.7E-18 2.6E-22 142.8 3.8 79 12-92 2-82 (115)
9 2qby_B CDC6 homolog 3, cell di 99.5 1.8E-13 6.3E-18 144.1 20.3 295 177-490 20-340 (384)
10 2v1u_A Cell division control p 99.5 9.9E-13 3.4E-17 138.5 24.4 296 177-490 19-352 (387)
11 1fnn_A CDC6P, cell division co 99.5 2.9E-12 9.9E-17 135.1 26.2 296 177-491 17-353 (389)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.4E-12 4.9E-17 137.2 18.7 296 177-489 20-348 (386)
13 1njg_A DNA polymerase III subu 99.3 1.5E-11 5E-16 120.4 16.6 198 177-389 23-231 (250)
14 2chg_A Replication factor C sm 99.3 1.4E-10 4.8E-15 111.7 18.0 187 177-387 17-205 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 8.5E-11 2.9E-15 120.5 15.5 266 177-488 12-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 9.8E-10 3.4E-14 112.4 13.9 187 177-387 21-211 (323)
17 1iqp_A RFCS; clamp loader, ext 98.9 8.6E-09 3E-13 105.5 13.1 188 177-388 25-214 (327)
18 3te6_A Regulatory protein SIR3 98.9 1.8E-08 6E-13 101.2 13.6 172 179-353 22-212 (318)
19 1jr3_A DNA polymerase III subu 98.8 5.6E-08 1.9E-12 101.5 15.8 195 177-386 16-221 (373)
20 3pfi_A Holliday junction ATP-d 98.8 4.3E-07 1.5E-11 93.3 20.2 257 176-492 28-316 (338)
21 2chq_A Replication factor C sm 98.7 9.5E-08 3.3E-12 97.3 14.6 182 177-386 17-204 (319)
22 1sxj_D Activator 1 41 kDa subu 98.6 8.1E-07 2.8E-11 91.8 15.7 195 177-386 37-235 (353)
23 1jbk_A CLPB protein; beta barr 98.5 1.8E-07 6.1E-12 87.3 7.4 46 177-226 22-67 (195)
24 3pvs_A Replication-associated 98.4 2.9E-06 9.9E-11 90.0 16.3 179 177-386 26-215 (447)
25 3e6j_A Variable lymphocyte rec 98.4 5.1E-07 1.7E-11 87.1 9.6 124 526-651 37-170 (229)
26 3uk6_A RUVB-like 2; hexameric 98.4 6.3E-07 2.2E-11 93.2 11.0 200 176-386 43-303 (368)
27 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.7E-11 87.2 13.0 183 176-385 16-230 (285)
28 3bos_A Putative DNA replicatio 98.4 4.5E-07 1.5E-11 88.0 8.9 175 177-387 28-218 (242)
29 3u61_B DNA polymerase accessor 98.4 3E-06 1E-10 86.4 15.1 180 177-385 26-215 (324)
30 1sxj_A Activator 1 95 kDa subu 98.4 2.6E-06 8.9E-11 92.6 15.0 195 176-385 38-252 (516)
31 1sxj_E Activator 1 40 kDa subu 98.4 3E-06 1E-10 87.5 14.4 198 177-387 14-238 (354)
32 2z4s_A Chromosomal replication 98.4 4.6E-06 1.6E-10 88.6 15.4 182 202-403 130-331 (440)
33 1a5t_A Delta prime, HOLB; zinc 98.3 7.7E-06 2.6E-10 83.6 15.3 172 183-385 8-204 (334)
34 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.2E-05 4E-10 79.2 15.9 186 177-386 6-222 (262)
35 1d2n_A N-ethylmaleimide-sensit 98.3 4.6E-06 1.6E-10 82.7 13.0 171 177-377 33-228 (272)
36 3syl_A Protein CBBX; photosynt 98.3 3.1E-06 1E-10 85.7 10.8 159 178-353 32-218 (309)
37 4fcg_A Uncharacterized protein 98.3 9.2E-07 3.2E-11 90.4 6.9 62 587-648 220-285 (328)
38 2v70_A SLIT-2, SLIT homolog 2 98.3 1.5E-06 5E-11 83.3 7.6 124 526-650 29-163 (220)
39 4b8c_D Glucose-repressible alc 98.2 8.6E-07 3E-11 100.6 6.8 100 530-651 225-327 (727)
40 4fcg_A Uncharacterized protein 98.2 2.7E-06 9.2E-11 86.9 9.6 124 529-654 183-315 (328)
41 2v9t_B SLIT homolog 2 protein 98.2 2.9E-06 9.8E-11 81.2 9.2 123 526-650 29-162 (220)
42 3m19_A Variable lymphocyte rec 98.2 2.9E-06 1E-10 83.0 8.9 55 592-647 105-162 (251)
43 2wfh_A SLIT homolog 2 protein 98.2 3.6E-06 1.2E-10 78.7 9.1 103 526-650 28-136 (193)
44 2ell_A Acidic leucine-rich nuc 98.2 1.3E-06 4.5E-11 79.6 5.7 128 528-656 23-163 (168)
45 2o6s_A Variable lymphocyte rec 98.2 5.1E-06 1.7E-10 78.6 9.7 123 526-650 25-158 (208)
46 3n70_A Transport activator; si 98.2 2.8E-06 9.4E-11 75.4 7.2 114 178-321 2-115 (145)
47 3e6j_A Variable lymphocyte rec 98.1 4.6E-06 1.6E-10 80.4 8.6 97 529-626 64-169 (229)
48 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00013 4.4E-09 74.0 19.6 187 177-387 12-224 (322)
49 4g8a_A TOLL-like receptor 4; l 98.1 3E-06 1E-10 94.8 8.2 125 524-650 47-183 (635)
50 2o6r_A Variable lymphocyte rec 98.1 6.7E-06 2.3E-10 75.6 8.9 103 527-650 26-134 (177)
51 2qp9_X Vacuolar protein sortin 98.1 4.2E-05 1.5E-09 78.7 15.7 185 177-386 51-261 (355)
52 1p9a_G Platelet glycoprotein I 98.1 5.4E-06 1.9E-10 83.0 8.7 129 526-656 28-164 (290)
53 1w8a_A SLIT protein; signaling 98.1 6E-06 2.1E-10 77.1 8.4 104 527-650 27-136 (192)
54 1l8q_A Chromosomal replication 98.1 4.8E-05 1.6E-09 77.4 15.8 169 187-382 24-204 (324)
55 3b9p_A CG5977-PA, isoform A; A 98.1 8.4E-05 2.9E-09 74.5 17.4 185 176-386 20-233 (297)
56 1dce_A Protein (RAB geranylger 98.1 3.8E-06 1.3E-10 92.3 7.8 96 531-650 443-543 (567)
57 1sxj_C Activator 1 40 kDa subu 98.1 3E-05 1E-09 79.4 14.1 182 177-383 25-209 (340)
58 3eie_A Vacuolar protein sortin 98.1 7.2E-05 2.5E-09 76.0 16.8 185 177-387 18-229 (322)
59 2je0_A Acidic leucine-rich nuc 98.1 3.3E-06 1.1E-10 75.2 5.9 117 529-646 17-146 (149)
60 2p65_A Hypothetical protein PF 98.1 3.1E-06 1.1E-10 78.3 5.8 46 177-226 22-67 (187)
61 3d8b_A Fidgetin-like protein 1 98.1 6.6E-05 2.3E-09 77.4 16.4 185 177-387 84-296 (357)
62 2o6q_A Variable lymphocyte rec 98.1 8.7E-06 3E-10 80.5 9.1 58 592-650 131-191 (270)
63 3ec2_A DNA replication protein 98.1 9.5E-06 3.2E-10 74.8 8.6 121 182-321 19-142 (180)
64 4b8c_D Glucose-repressible alc 98.1 3.9E-06 1.3E-10 95.2 6.9 83 548-650 218-303 (727)
65 4ezg_A Putative uncharacterize 98.0 4.9E-06 1.7E-10 78.0 6.6 116 529-650 66-191 (197)
66 1a9n_A U2A', U2A'; complex (nu 98.0 5.1E-06 1.8E-10 76.3 6.3 66 584-650 75-150 (176)
67 2v9t_B SLIT homolog 2 protein 98.0 1.1E-05 3.9E-10 77.0 8.2 96 529-625 56-161 (220)
68 2gno_A DNA polymerase III, gam 98.0 2.8E-05 9.6E-10 78.0 11.1 149 181-352 1-152 (305)
69 2r9u_A Variable lymphocyte rec 98.0 7.6E-06 2.6E-10 75.1 6.4 58 592-650 55-115 (174)
70 3cf0_A Transitional endoplasmi 98.0 0.0002 6.8E-09 71.9 17.4 179 177-381 15-223 (301)
71 3rfs_A Internalin B, repeat mo 98.0 1.2E-05 4.2E-10 79.6 8.1 118 529-650 63-191 (272)
72 1a9n_A U2A', U2A'; complex (nu 98.0 9.5E-06 3.2E-10 74.5 6.8 99 529-650 19-123 (176)
73 3vfd_A Spastin; ATPase, microt 98.0 0.00012 4E-09 76.6 15.9 186 176-386 114-326 (389)
74 2zan_A Vacuolar protein sortin 98.0 0.00017 5.9E-09 76.5 17.4 187 176-386 133-345 (444)
75 1p9a_G Platelet glycoprotein I 98.0 1.1E-05 3.9E-10 80.6 7.8 119 529-650 77-205 (290)
76 3rfs_A Internalin B, repeat mo 98.0 1.5E-05 5.2E-10 78.9 8.5 120 529-650 85-215 (272)
77 3m19_A Variable lymphocyte rec 98.0 1.1E-05 3.9E-10 78.7 7.4 119 530-650 60-189 (251)
78 1qvr_A CLPB protein; coiled co 97.9 1.3E-05 4.4E-10 92.7 8.8 155 177-351 170-344 (854)
79 3vq2_A TLR4, TOLL-like recepto 97.9 1.2E-05 4E-10 89.6 8.2 124 525-650 28-163 (606)
80 2z63_A TOLL-like receptor 4, v 97.9 1.2E-05 4.2E-10 88.6 8.2 123 526-650 25-159 (570)
81 2xot_A Amphoterin-induced prot 97.9 1E-05 3.5E-10 83.8 6.8 124 526-651 36-174 (361)
82 2o6q_A Variable lymphocyte rec 97.9 1.8E-05 6.1E-10 78.3 8.3 120 529-650 85-215 (270)
83 3co5_A Putative two-component 97.9 8.1E-06 2.8E-10 72.2 5.2 111 177-321 4-115 (143)
84 3g39_A Variable lymphocyte rec 97.9 1.6E-05 5.6E-10 72.5 7.3 56 592-648 52-110 (170)
85 1in4_A RUVB, holliday junction 97.9 0.00029 9.8E-09 71.8 17.5 177 177-386 25-223 (334)
86 2o6s_A Variable lymphocyte rec 97.9 2.2E-05 7.5E-10 74.2 8.5 98 529-627 52-159 (208)
87 2je0_A Acidic leucine-rich nuc 97.9 7.3E-06 2.5E-10 72.9 4.8 33 592-624 111-148 (149)
88 3zyi_A Leucine-rich repeat-con 97.9 1.3E-05 4.5E-10 85.7 7.5 121 526-647 72-203 (452)
89 3hu3_A Transitional endoplasmi 97.9 7.7E-05 2.6E-09 79.8 12.6 183 177-385 204-414 (489)
90 2z62_A TOLL-like receptor 4, v 97.9 2.1E-05 7.3E-10 77.9 7.8 120 527-648 26-157 (276)
91 3pxg_A Negative regulator of g 97.9 4E-05 1.4E-09 82.0 10.3 148 177-352 180-338 (468)
92 2r9u_A Variable lymphocyte rec 97.9 2.1E-05 7.2E-10 72.0 7.0 93 527-640 31-128 (174)
93 2z80_A TOLL-like receptor 2, v 97.9 2.2E-05 7.7E-10 80.9 7.9 124 526-650 49-184 (353)
94 2w58_A DNAI, primosome compone 97.8 2.5E-05 8.5E-10 73.4 7.5 118 185-321 37-158 (202)
95 1ozn_A Reticulon 4 receptor; N 97.8 2.8E-05 9.4E-10 77.5 8.1 58 592-650 127-187 (285)
96 3o53_A Protein LRIM1, AGAP0063 97.8 1.6E-05 5.3E-10 80.8 6.2 121 529-651 120-248 (317)
97 4fcw_A Chaperone protein CLPB; 97.8 7.3E-05 2.5E-09 75.5 10.6 134 178-321 18-169 (311)
98 4ezg_A Putative uncharacterize 97.8 2.7E-05 9.3E-10 72.9 6.9 118 529-650 44-169 (197)
99 1ogq_A PGIP-2, polygalacturona 97.8 2E-05 6.7E-10 79.8 6.2 121 529-650 50-184 (313)
100 3oja_A Leucine-rich immune mol 97.8 1.8E-05 6.2E-10 85.4 6.3 121 529-651 120-248 (487)
101 1ozn_A Reticulon 4 receptor; N 97.8 3.3E-05 1.1E-09 77.0 7.8 120 529-650 80-211 (285)
102 3zyj_A Leucine-rich repeat-con 97.8 2.1E-05 7E-10 83.9 6.4 108 526-634 61-178 (440)
103 1ziw_A TOLL-like receptor 3; i 97.8 2.7E-05 9.4E-10 87.9 7.8 124 525-650 21-155 (680)
104 1r6b_X CLPA protein; AAA+, N-t 97.8 0.0003 1E-08 80.3 16.3 157 177-352 186-362 (758)
105 4b4t_J 26S protease regulatory 97.8 0.00035 1.2E-08 71.8 14.9 176 177-379 148-354 (405)
106 2wfh_A SLIT homolog 2 protein 97.8 4E-05 1.4E-09 71.5 7.2 83 554-656 31-118 (193)
107 1h6t_A Internalin B; cell adhe 97.7 3.6E-05 1.2E-09 77.0 7.1 115 530-650 91-210 (291)
108 1h6t_A Internalin B; cell adhe 97.7 4E-05 1.4E-09 76.7 7.2 116 529-650 68-188 (291)
109 2z66_A Variable lymphocyte rec 97.7 3.3E-05 1.1E-09 77.8 6.6 123 526-650 25-160 (306)
110 1h6u_A Internalin H; cell adhe 97.7 3.1E-05 1E-09 78.2 6.3 116 529-650 63-183 (308)
111 1ogq_A PGIP-2, polygalacturona 97.7 3.8E-05 1.3E-09 77.7 6.9 119 529-650 76-207 (313)
112 4fmz_A Internalin; leucine ric 97.7 3.8E-05 1.3E-09 78.9 7.0 35 592-627 108-143 (347)
113 2z7x_B TOLL-like receptor 1, v 97.7 3.6E-05 1.2E-09 83.9 7.2 98 527-625 19-124 (520)
114 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 5.3E-05 1.8E-09 83.5 8.5 104 526-631 49-160 (562)
115 1lv7_A FTSH; alpha/beta domain 97.7 0.00067 2.3E-08 66.2 15.5 184 176-385 11-224 (257)
116 2xwt_C Thyrotropin receptor; s 97.7 2.6E-05 9E-10 75.4 5.2 51 598-649 134-188 (239)
117 2id5_A Lingo-1, leucine rich r 97.7 6.2E-05 2.1E-09 81.0 8.7 124 525-650 28-162 (477)
118 3j0a_A TOLL-like receptor 5; m 97.7 5.5E-05 1.9E-09 87.6 8.6 122 527-650 22-158 (844)
119 3o6n_A APL1; leucine-rich repe 97.7 4.7E-05 1.6E-09 79.6 7.3 120 529-650 45-175 (390)
120 1h6u_A Internalin H; cell adhe 97.7 5.7E-05 1.9E-09 76.2 7.6 116 529-650 85-205 (308)
121 1ofh_A ATP-dependent HSL prote 97.7 0.00012 4.1E-09 73.7 10.0 50 177-226 15-74 (310)
122 4b4t_L 26S protease subunit RP 97.7 0.00059 2E-08 71.3 15.0 176 177-379 181-387 (437)
123 2o6r_A Variable lymphocyte rec 97.7 7.5E-05 2.6E-09 68.4 7.2 80 553-652 27-112 (177)
124 2z81_A CD282 antigen, TOLL-lik 97.7 5.9E-05 2E-09 82.7 7.7 124 526-650 23-158 (549)
125 1xeu_A Internalin C; cellular 97.6 5.5E-05 1.9E-09 74.4 6.6 116 529-650 63-182 (263)
126 1xku_A Decorin; proteoglycan, 97.6 9E-05 3.1E-09 75.5 8.3 58 592-650 214-273 (330)
127 1m9s_A Internalin B; cell inva 97.6 5.4E-05 1.8E-09 83.7 7.0 116 529-650 87-207 (605)
128 2c9o_A RUVB-like 1; hexameric 97.6 0.0002 6.7E-09 76.4 11.2 98 284-386 297-410 (456)
129 2z66_A Variable lymphocyte rec 97.6 5.6E-05 1.9E-09 76.1 6.6 57 592-649 173-232 (306)
130 2ft3_A Biglycan; proteoglycan, 97.6 0.00013 4.3E-09 74.5 9.3 58 592-650 215-274 (332)
131 2bjv_A PSP operon transcriptio 97.6 8.3E-05 2.8E-09 73.2 7.6 132 177-321 6-150 (265)
132 1m9s_A Internalin B; cell inva 97.6 6.4E-05 2.2E-09 83.1 7.5 40 592-633 173-213 (605)
133 3g39_A Variable lymphocyte rec 97.6 4.6E-05 1.6E-09 69.5 5.2 73 583-656 19-94 (170)
134 1w8a_A SLIT protein; signaling 97.6 0.0001 3.5E-09 68.6 7.7 58 592-650 52-112 (192)
135 2ce7_A Cell division protein F 97.6 0.0009 3.1E-08 71.0 15.7 178 176-379 15-221 (476)
136 1dce_A Protein (RAB geranylger 97.6 8.3E-05 2.8E-09 81.6 8.0 96 529-646 463-566 (567)
137 1xeu_A Internalin C; cellular 97.6 9E-05 3.1E-09 72.8 7.5 51 594-647 106-157 (263)
138 4b4t_H 26S protease regulatory 97.6 0.00072 2.5E-08 70.5 14.3 176 177-379 209-415 (467)
139 1ojl_A Transcriptional regulat 97.6 0.0005 1.7E-08 69.0 12.5 160 177-349 2-187 (304)
140 2ell_A Acidic leucine-rich nuc 97.6 4.5E-05 1.5E-09 69.2 4.4 99 552-651 22-131 (168)
141 3t6q_A CD180 antigen; protein- 97.6 8.7E-05 3E-09 82.5 7.6 124 524-650 28-163 (606)
142 2z80_A TOLL-like receptor 2, v 97.6 7.1E-05 2.4E-09 77.1 6.3 121 529-651 76-209 (353)
143 4ecn_A Leucine-rich repeat pro 97.6 5E-05 1.7E-09 87.3 5.4 119 529-650 491-629 (876)
144 3oja_B Anopheles plasmodium-re 97.6 0.00013 4.5E-09 80.9 8.7 58 592-650 121-181 (597)
145 3pxi_A Negative regulator of g 97.6 0.00012 4E-09 83.6 8.5 149 177-352 180-338 (758)
146 3v47_A TOLL-like receptor 5B a 97.5 8E-05 2.7E-09 79.6 6.7 122 527-650 28-164 (455)
147 3zyj_A Leucine-rich repeat-con 97.5 0.00012 4.1E-09 77.9 7.8 64 585-649 197-264 (440)
148 3oja_B Anopheles plasmodium-re 97.5 9.4E-05 3.2E-09 82.1 6.9 81 550-650 71-157 (597)
149 3o6n_A APL1; leucine-rich repe 97.5 0.00019 6.3E-09 75.0 8.7 118 529-650 69-196 (390)
150 1o6v_A Internalin A; bacterial 97.5 0.00011 3.9E-09 78.7 7.3 114 530-649 47-165 (466)
151 3zyi_A Leucine-rich repeat-con 97.5 0.00016 5.6E-09 77.1 8.3 66 584-650 207-276 (452)
152 2r62_A Cell division protease 97.5 8.2E-05 2.8E-09 73.3 5.4 50 177-226 11-68 (268)
153 4b4t_K 26S protease regulatory 97.5 0.00073 2.5E-08 70.5 12.7 50 177-226 172-230 (428)
154 4g8a_A TOLL-like receptor 4; l 97.5 0.00014 4.7E-09 81.2 7.8 113 529-643 76-200 (635)
155 2kjq_A DNAA-related protein; s 97.5 5.7E-05 2E-09 67.0 3.7 86 203-321 37-124 (149)
156 2ifg_A High affinity nerve gro 97.4 0.00014 4.7E-09 74.7 6.5 84 548-650 25-113 (347)
157 3pxi_A Negative regulator of g 97.4 0.0003 1E-08 80.2 9.9 154 177-352 491-675 (758)
158 4ecn_A Leucine-rich repeat pro 97.4 0.00017 5.9E-09 82.8 7.8 68 583-650 738-816 (876)
159 2ft3_A Biglycan; proteoglycan, 97.4 0.00024 8.2E-09 72.4 8.1 121 527-650 52-182 (332)
160 4b4t_I 26S protease regulatory 97.4 0.0011 3.8E-08 68.4 12.8 176 177-379 182-388 (437)
161 4eco_A Uncharacterized protein 97.4 0.00018 6.2E-09 80.4 7.7 120 530-650 434-576 (636)
162 1ds9_A Outer arm dynein; leuci 97.4 9.2E-06 3.2E-10 76.2 -2.7 65 584-650 81-150 (198)
163 4glp_A Monocyte differentiatio 97.4 0.00013 4.5E-09 73.5 5.7 55 592-649 222-281 (310)
164 2xwt_C Thyrotropin receptor; s 97.4 0.00038 1.3E-08 67.1 8.7 67 584-650 142-215 (239)
165 4eco_A Uncharacterized protein 97.4 0.00014 4.9E-09 81.2 6.4 120 529-650 206-363 (636)
166 4b4t_M 26S protease regulatory 97.4 0.00057 2E-08 71.3 10.5 176 177-379 181-387 (434)
167 2r44_A Uncharacterized protein 97.4 0.00045 1.6E-08 70.3 9.3 151 178-353 28-199 (331)
168 2z62_A TOLL-like receptor 4, v 97.4 0.00021 7.2E-09 70.6 6.5 41 592-633 122-165 (276)
169 3v47_A TOLL-like receptor 5B a 97.4 0.00035 1.2E-08 74.4 8.7 119 530-650 276-405 (455)
170 1wwl_A Monocyte differentiatio 97.3 0.00014 4.8E-09 73.4 5.2 56 592-650 251-306 (312)
171 2z63_A TOLL-like receptor 4, v 97.3 0.00019 6.4E-09 79.0 6.5 112 529-642 52-175 (570)
172 3bz5_A Internalin-J, INLJ; leu 97.3 0.00033 1.1E-08 74.8 7.9 114 529-650 42-158 (457)
173 2z81_A CD282 antigen, TOLL-lik 97.3 0.00017 5.9E-09 79.0 5.8 122 529-651 50-183 (549)
174 2v70_A SLIT-2, SLIT homolog 2 97.3 0.00014 4.9E-09 69.3 4.4 96 554-650 32-139 (220)
175 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.0011 3.7E-08 70.9 11.2 43 178-226 23-65 (500)
176 3cf2_A TER ATPase, transitiona 97.3 0.0033 1.1E-07 70.7 15.3 178 177-380 204-408 (806)
177 2cvh_A DNA repair and recombin 97.2 0.0014 4.7E-08 62.1 10.7 85 203-294 21-117 (220)
178 3vq2_A TLR4, TOLL-like recepto 97.2 0.00029 1E-08 78.2 6.6 113 529-643 56-180 (606)
179 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00047 1.6E-08 78.7 8.3 131 177-321 458-607 (758)
180 3m6a_A ATP-dependent protease 97.2 0.0011 3.7E-08 72.2 10.6 163 177-352 81-266 (543)
181 2xot_A Amphoterin-induced prot 97.2 0.00029 9.8E-09 72.8 5.6 102 554-656 39-152 (361)
182 3j0a_A TOLL-like receptor 5; m 97.2 0.00046 1.6E-08 79.9 7.7 121 529-650 48-184 (844)
183 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.00058 2E-08 75.0 8.1 56 594-650 450-507 (562)
184 2ifg_A High affinity nerve gro 97.2 0.00034 1.2E-08 71.7 5.8 73 584-657 20-97 (347)
185 3rgz_A Protein brassinosteroid 97.2 0.00059 2E-08 78.1 8.2 121 529-650 418-548 (768)
186 3cvr_A Invasion plasmid antige 97.1 0.00044 1.5E-08 75.6 6.7 111 530-650 121-240 (571)
187 3g06_A SSPH2 (leucine-rich rep 97.1 0.00055 1.9E-08 75.8 7.5 55 592-649 239-293 (622)
188 1o6v_A Internalin A; bacterial 97.1 0.00054 1.9E-08 73.4 7.3 115 529-650 68-187 (466)
189 4fmz_A Internalin; leucine ric 97.1 0.00052 1.8E-08 70.2 6.9 117 529-650 221-343 (347)
190 1xku_A Decorin; proteoglycan, 97.1 0.0009 3.1E-08 68.0 8.6 44 592-636 143-190 (330)
191 1wwl_A Monocyte differentiatio 97.1 0.00029 1E-08 71.0 4.5 120 529-650 95-238 (312)
192 1ds9_A Outer arm dynein; leuci 97.1 3.1E-05 1.1E-09 72.5 -2.8 65 584-650 59-125 (198)
193 4ay9_X Follicle-stimulating ho 97.1 0.0008 2.7E-08 69.0 7.5 64 583-647 164-233 (350)
194 3rgz_A Protein brassinosteroid 97.1 0.00051 1.8E-08 78.6 6.5 63 587-650 647-714 (768)
195 2z7x_B TOLL-like receptor 1, v 97.1 0.001 3.5E-08 72.2 8.6 121 529-650 348-478 (520)
196 2id5_A Lingo-1, leucine rich r 97.1 0.00071 2.4E-08 72.6 7.2 58 592-650 270-330 (477)
197 3t6q_A CD180 antigen; protein- 97.0 0.00099 3.4E-08 73.9 8.3 119 530-650 255-386 (606)
198 3t15_A Ribulose bisphosphate c 97.0 0.00083 2.9E-08 66.9 6.8 27 200-226 34-60 (293)
199 2dhr_A FTSH; AAA+ protein, hex 97.0 0.013 4.4E-07 62.5 16.3 174 176-379 30-236 (499)
200 2qgz_A Helicase loader, putati 97.0 0.0005 1.7E-08 69.0 4.9 43 184-227 135-177 (308)
201 3o53_A Protein LRIM1, AGAP0063 97.0 0.00015 5E-09 73.5 1.0 117 529-647 144-269 (317)
202 3oja_A Leucine-rich immune mol 97.0 0.00027 9.3E-09 76.1 2.9 57 592-650 142-201 (487)
203 1jl5_A Outer protein YOPM; leu 96.9 0.0013 4.4E-08 70.1 8.0 108 529-641 131-261 (454)
204 3bz5_A Internalin-J, INLJ; leu 96.9 0.00054 1.9E-08 73.1 4.8 97 549-650 37-137 (457)
205 1qvr_A CLPB protein; coiled co 96.9 0.0019 6.4E-08 74.6 9.2 133 178-321 559-710 (854)
206 3cvr_A Invasion plasmid antige 96.9 0.0016 5.4E-08 71.2 7.9 49 584-637 151-199 (571)
207 1ziw_A TOLL-like receptor 3; i 96.8 0.0017 5.9E-08 73.0 8.2 58 592-650 534-594 (680)
208 4glp_A Monocyte differentiatio 96.8 0.0015 5.2E-08 65.6 7.0 124 529-653 117-264 (310)
209 4ay9_X Follicle-stimulating ho 96.8 0.0016 5.4E-08 66.8 7.2 63 583-647 188-253 (350)
210 3g06_A SSPH2 (leucine-rich rep 96.8 0.0018 6.1E-08 71.7 7.9 20 593-612 140-159 (622)
211 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00049 1.7E-08 68.3 2.1 69 203-294 124-194 (331)
212 1um8_A ATP-dependent CLP prote 96.7 0.0054 1.8E-07 63.5 10.1 49 178-226 22-96 (376)
213 1jl5_A Outer protein YOPM; leu 96.7 0.0024 8.2E-08 68.0 7.6 48 594-643 173-221 (454)
214 2ast_B S-phase kinase-associat 96.7 0.00073 2.5E-08 68.7 3.1 59 592-650 140-205 (336)
215 1jr3_D DNA polymerase III, del 96.6 0.029 9.9E-07 57.0 15.0 157 202-385 18-184 (343)
216 2x8a_A Nuclear valosin-contain 96.6 0.03 1E-06 54.9 14.5 153 177-352 10-191 (274)
217 1ypw_A Transitional endoplasmi 96.6 0.013 4.6E-07 66.7 13.3 156 176-352 203-385 (806)
218 2ca6_A RAN GTPase-activating p 96.6 0.00033 1.1E-08 73.0 -0.4 58 592-650 242-313 (386)
219 2ast_B S-phase kinase-associat 96.5 0.00033 1.1E-08 71.3 -0.5 63 588-650 160-232 (336)
220 3io5_A Recombination and repai 96.5 0.0087 3E-07 59.1 9.3 85 204-294 30-123 (333)
221 3hr8_A Protein RECA; alpha and 96.4 0.0072 2.4E-07 61.4 8.2 84 203-294 62-151 (356)
222 2b8t_A Thymidine kinase; deoxy 96.3 0.0018 6.1E-08 61.3 3.3 111 203-322 13-126 (223)
223 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0098 3.3E-07 56.6 7.3 114 203-322 24-168 (235)
224 1rz3_A Hypothetical protein rb 96.0 0.0066 2.2E-07 56.6 5.5 44 182-226 3-46 (201)
225 1xp8_A RECA protein, recombina 96.0 0.016 5.6E-07 59.2 8.8 84 203-294 75-164 (366)
226 1v5w_A DMC1, meiotic recombina 96.0 0.025 8.7E-07 57.4 10.1 51 202-252 122-175 (343)
227 1n0w_A DNA repair protein RAD5 95.9 0.019 6.5E-07 55.0 8.4 48 203-250 25-75 (243)
228 2ca6_A RAN GTPase-activating p 95.9 0.0031 1.1E-07 65.5 2.7 58 592-650 214-284 (386)
229 2zr9_A Protein RECA, recombina 95.8 0.017 5.7E-07 58.8 7.9 84 203-294 62-151 (349)
230 2ff7_A Alpha-hemolysin translo 95.8 0.03 1E-06 53.9 9.2 23 203-225 36-58 (247)
231 2cbz_A Multidrug resistance-as 95.8 0.041 1.4E-06 52.6 10.1 24 203-226 32-55 (237)
232 2px0_A Flagellar biosynthesis 95.8 0.022 7.5E-07 56.5 8.3 86 202-291 105-191 (296)
233 2pze_A Cystic fibrosis transme 95.8 0.067 2.3E-06 50.8 11.4 24 203-226 35-58 (229)
234 2z43_A DNA repair and recombin 95.7 0.018 6.1E-07 58.1 7.6 55 203-258 108-165 (324)
235 2i1q_A DNA repair and recombin 95.7 0.019 6.3E-07 57.9 7.7 56 203-259 99-167 (322)
236 3tqc_A Pantothenate kinase; bi 95.7 0.0089 3E-07 59.8 5.1 47 179-225 69-115 (321)
237 3rw6_A Nuclear RNA export fact 95.7 0.0081 2.8E-07 58.4 4.7 77 552-646 168-257 (267)
238 3c8u_A Fructokinase; YP_612366 95.7 0.0077 2.6E-07 56.5 4.3 41 185-227 7-47 (208)
239 1g5t_A COB(I)alamin adenosyltr 95.6 0.01 3.5E-07 54.4 4.6 116 204-322 30-163 (196)
240 1pzn_A RAD51, DNA repair and r 95.6 0.018 6.3E-07 58.6 6.9 48 202-249 131-181 (349)
241 2orw_A Thymidine kinase; TMTK, 95.5 0.0013 4.4E-08 60.5 -1.9 107 203-321 4-112 (184)
242 1u94_A RECA protein, recombina 95.5 0.023 7.9E-07 57.9 7.3 84 203-294 64-153 (356)
243 1odf_A YGR205W, hypothetical 3 95.4 0.014 4.7E-07 57.8 5.3 28 200-227 29-56 (290)
244 3ice_A Transcription terminati 95.3 0.028 9.5E-07 57.0 7.1 54 188-245 163-216 (422)
245 3rw6_A Nuclear RNA export fact 95.3 0.0086 2.9E-07 58.3 3.2 57 592-650 168-230 (267)
246 1ly1_A Polynucleotide kinase; 95.3 0.0092 3.1E-07 54.3 3.2 22 203-224 3-24 (181)
247 1gvn_B Zeta; postsegregational 95.3 0.014 4.9E-07 57.6 4.8 26 200-225 31-56 (287)
248 3lw7_A Adenylate kinase relate 95.2 0.0087 3E-07 54.1 3.0 20 203-222 2-21 (179)
249 1zp6_A Hypothetical protein AT 95.2 0.011 3.9E-07 54.3 3.6 23 203-225 10-32 (191)
250 3sr0_A Adenylate kinase; phosp 95.2 0.03 1E-06 52.2 6.4 76 204-294 2-86 (206)
251 3kb2_A SPBC2 prophage-derived 95.2 0.009 3.1E-07 53.9 2.8 23 203-225 2-24 (173)
252 1qhx_A CPT, protein (chloramph 95.1 0.0094 3.2E-07 54.1 2.9 23 203-225 4-26 (178)
253 3nh6_A ATP-binding cassette SU 95.1 0.034 1.1E-06 55.3 7.1 23 203-225 81-103 (306)
254 1kgd_A CASK, peripheral plasma 95.1 0.0094 3.2E-07 54.4 2.8 23 203-225 6-28 (180)
255 1vma_A Cell division protein F 95.1 0.087 3E-06 52.3 9.9 90 200-293 102-197 (306)
256 3hws_A ATP-dependent CLP prote 95.0 0.016 5.4E-07 59.6 4.6 49 178-226 16-75 (363)
257 1ixz_A ATP-dependent metallopr 95.0 0.023 7.9E-07 55.0 5.5 50 177-226 16-73 (254)
258 3tui_C Methionine import ATP-b 95.0 0.056 1.9E-06 54.9 8.3 58 270-327 169-229 (366)
259 3cf2_A TER ATPase, transitiona 94.9 0.031 1.1E-06 62.9 6.8 96 177-293 477-581 (806)
260 2ga8_A Hypothetical 39.9 kDa p 94.9 0.024 8.1E-07 57.1 5.3 47 180-226 2-48 (359)
261 3d31_A Sulfate/molybdate ABC t 94.9 0.068 2.3E-06 54.1 8.7 56 271-326 134-192 (348)
262 3vaa_A Shikimate kinase, SK; s 94.9 0.012 4.1E-07 54.7 2.9 23 203-225 26-48 (199)
263 3uie_A Adenylyl-sulfate kinase 94.9 0.017 5.7E-07 53.8 3.8 26 202-227 25-50 (200)
264 2rhm_A Putative kinase; P-loop 94.8 0.015 5.2E-07 53.5 3.4 24 202-225 5-28 (193)
265 1sky_E F1-ATPase, F1-ATP synth 94.8 0.048 1.7E-06 57.1 7.5 50 204-255 153-203 (473)
266 3kl4_A SRP54, signal recogniti 94.8 0.11 3.6E-06 54.2 10.0 90 201-293 96-190 (433)
267 1kag_A SKI, shikimate kinase I 94.8 0.011 3.8E-07 53.3 2.4 23 203-225 5-27 (173)
268 4gp7_A Metallophosphoesterase; 94.8 0.017 5.7E-07 52.3 3.4 22 203-224 10-31 (171)
269 3tau_A Guanylate kinase, GMP k 94.8 0.015 5.1E-07 54.5 3.2 24 203-226 9-32 (208)
270 3umf_A Adenylate kinase; rossm 94.8 0.015 5.1E-07 54.6 3.2 27 200-226 27-53 (217)
271 3bh0_A DNAB-like replicative h 94.7 0.2 6.7E-06 50.1 11.6 51 203-258 69-119 (315)
272 3e70_C DPA, signal recognition 94.7 0.12 4.2E-06 51.8 10.0 27 201-227 128-154 (328)
273 1nks_A Adenylate kinase; therm 94.7 0.015 5.3E-07 53.4 3.2 25 203-227 2-26 (194)
274 3lda_A DNA repair protein RAD5 94.7 0.11 3.8E-06 53.6 9.9 56 203-259 179-237 (400)
275 4a1f_A DNAB helicase, replicat 94.7 0.087 3E-06 53.0 8.8 52 203-259 47-98 (338)
276 3tr0_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 53.9 3.1 23 203-225 8-30 (205)
277 1knq_A Gluconate kinase; ALFA/ 94.6 0.02 6.9E-07 51.7 3.7 24 202-225 8-31 (175)
278 1g8p_A Magnesium-chelatase 38 94.6 0.016 5.6E-07 59.0 3.4 46 177-226 24-69 (350)
279 1iy2_A ATP-dependent metallopr 94.6 0.034 1.2E-06 54.7 5.6 51 176-226 39-97 (278)
280 3trf_A Shikimate kinase, SK; a 94.6 0.015 5.1E-07 53.2 2.8 23 203-225 6-28 (185)
281 1ye8_A Protein THEP1, hypothet 94.6 0.017 5.9E-07 52.5 3.1 23 204-226 2-24 (178)
282 2yvu_A Probable adenylyl-sulfa 94.6 0.022 7.7E-07 52.1 3.9 27 201-227 12-38 (186)
283 3e4g_A ATP synthase subunit S, 94.6 0.039 1.3E-06 49.7 5.3 89 530-631 62-154 (176)
284 4eun_A Thermoresistant glucoki 94.6 0.017 5.9E-07 53.6 3.1 23 203-225 30-52 (200)
285 3asz_A Uridine kinase; cytidin 94.5 0.02 6.8E-07 53.6 3.5 24 202-225 6-29 (211)
286 3t61_A Gluconokinase; PSI-biol 94.5 0.012 4.2E-07 54.7 2.0 24 202-225 18-41 (202)
287 3a00_A Guanylate kinase, GMP k 94.5 0.014 4.9E-07 53.5 2.4 24 203-226 2-25 (186)
288 2bdt_A BH3686; alpha-beta prot 94.5 0.02 6.9E-07 52.5 3.4 22 203-224 3-24 (189)
289 1ex7_A Guanylate kinase; subst 94.5 0.013 4.4E-07 53.7 1.9 22 204-225 3-24 (186)
290 1kht_A Adenylate kinase; phosp 94.4 0.018 6.3E-07 52.8 3.0 24 203-226 4-27 (192)
291 1tev_A UMP-CMP kinase; ploop, 94.4 0.02 6.9E-07 52.6 3.2 24 202-225 3-26 (196)
292 1ukz_A Uridylate kinase; trans 94.4 0.024 8.3E-07 52.7 3.8 25 201-225 14-38 (203)
293 2qt1_A Nicotinamide riboside k 94.4 0.024 8.2E-07 52.9 3.7 24 202-225 21-44 (207)
294 2ze6_A Isopentenyl transferase 94.4 0.02 6.8E-07 55.5 3.2 23 203-225 2-24 (253)
295 1uf9_A TT1252 protein; P-loop, 94.4 0.023 7.9E-07 52.7 3.6 26 200-225 6-31 (203)
296 2qor_A Guanylate kinase; phosp 94.4 0.016 5.6E-07 54.0 2.5 25 202-226 12-36 (204)
297 2j41_A Guanylate kinase; GMP, 94.3 0.02 7E-07 53.3 3.1 24 203-226 7-30 (207)
298 1lvg_A Guanylate kinase, GMP k 94.3 0.017 5.7E-07 53.7 2.4 23 203-225 5-27 (198)
299 1sq5_A Pantothenate kinase; P- 94.3 0.045 1.6E-06 54.6 5.6 25 201-225 79-103 (308)
300 3iij_A Coilin-interacting nucl 94.3 0.017 6E-07 52.5 2.4 23 203-225 12-34 (180)
301 2c95_A Adenylate kinase 1; tra 94.3 0.022 7.4E-07 52.6 3.0 23 203-225 10-32 (196)
302 3ney_A 55 kDa erythrocyte memb 94.2 0.021 7.2E-07 52.6 2.8 24 202-225 19-42 (197)
303 2jaq_A Deoxyguanosine kinase; 94.2 0.022 7.5E-07 52.9 3.0 22 204-225 2-23 (205)
304 1qf9_A UMP/CMP kinase, protein 94.2 0.03 1E-06 51.4 3.8 24 202-225 6-29 (194)
305 1cke_A CK, MSSA, protein (cyti 94.1 0.023 7.8E-07 53.9 3.0 23 203-225 6-28 (227)
306 1y63_A LMAJ004144AAA protein; 94.1 0.024 8.3E-07 51.8 3.1 24 202-225 10-33 (184)
307 2bbw_A Adenylate kinase 4, AK4 94.1 0.024 8E-07 54.7 3.1 24 202-225 27-50 (246)
308 2cdn_A Adenylate kinase; phosp 94.1 0.027 9.2E-07 52.3 3.4 24 202-225 20-43 (201)
309 1jjv_A Dephospho-COA kinase; P 94.1 0.027 9.4E-07 52.4 3.4 22 203-224 3-24 (206)
310 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.026 8.9E-07 54.9 3.4 24 202-225 4-27 (260)
311 2if2_A Dephospho-COA kinase; a 94.1 0.024 8.1E-07 52.8 3.0 21 204-224 3-23 (204)
312 1uj2_A Uridine-cytidine kinase 94.1 0.026 9E-07 54.6 3.4 26 200-225 20-45 (252)
313 3upu_A ATP-dependent DNA helic 94.1 0.049 1.7E-06 57.8 5.7 107 204-323 47-166 (459)
314 3cm0_A Adenylate kinase; ATP-b 94.1 0.029 9.9E-07 51.2 3.4 23 203-225 5-27 (186)
315 1z7x_W Ribonuclease inhibitor; 94.1 0.019 6.6E-07 60.8 2.6 35 595-630 86-126 (461)
316 3llm_A ATP-dependent RNA helic 94.1 0.19 6.4E-06 47.8 9.3 102 186-294 66-188 (235)
317 2ck3_D ATP synthase subunit be 94.0 0.22 7.4E-06 52.1 10.2 65 188-257 142-207 (482)
318 1znw_A Guanylate kinase, GMP k 94.0 0.027 9.1E-07 52.7 3.2 23 203-225 21-43 (207)
319 2plr_A DTMP kinase, probable t 94.0 0.029 9.8E-07 52.4 3.4 25 203-227 5-29 (213)
320 1htw_A HI0065; nucleotide-bind 94.0 0.031 1.1E-06 49.6 3.4 23 203-225 34-56 (158)
321 1zuh_A Shikimate kinase; alpha 94.0 0.025 8.5E-07 50.8 2.8 24 202-225 7-30 (168)
322 2p5t_B PEZT; postsegregational 94.0 0.034 1.2E-06 53.8 3.9 39 187-225 16-55 (253)
323 3tlx_A Adenylate kinase 2; str 94.0 0.04 1.4E-06 52.9 4.4 25 201-225 28-52 (243)
324 3aez_A Pantothenate kinase; tr 93.9 0.031 1.1E-06 55.8 3.7 26 201-226 89-114 (312)
325 2bwj_A Adenylate kinase 5; pho 93.9 0.025 8.5E-07 52.3 2.8 23 203-225 13-35 (199)
326 1via_A Shikimate kinase; struc 93.9 0.025 8.7E-07 51.1 2.7 22 204-225 6-27 (175)
327 3l0o_A Transcription terminati 93.9 0.019 6.4E-07 58.2 1.8 53 188-244 164-216 (427)
328 2iyv_A Shikimate kinase, SK; t 93.9 0.02 7E-07 52.2 2.0 22 204-225 4-25 (184)
329 1xjc_A MOBB protein homolog; s 93.8 0.029 9.9E-07 50.3 2.8 26 202-227 4-29 (169)
330 2xxa_A Signal recognition part 93.8 0.3 1E-05 51.0 11.0 29 200-228 98-126 (433)
331 2jeo_A Uridine-cytidine kinase 93.8 0.036 1.2E-06 53.3 3.6 24 202-225 25-48 (245)
332 3fwy_A Light-independent proto 93.8 0.034 1.2E-06 55.6 3.5 41 200-243 46-86 (314)
333 1e6c_A Shikimate kinase; phosp 93.8 0.024 8.2E-07 51.1 2.2 23 203-225 3-25 (173)
334 3dm5_A SRP54, signal recogniti 93.7 0.12 4.2E-06 53.7 7.8 27 201-227 99-125 (443)
335 1z6g_A Guanylate kinase; struc 93.7 0.027 9.3E-07 53.1 2.6 23 203-225 24-46 (218)
336 2vli_A Antibiotic resistance p 93.7 0.021 7.1E-07 52.0 1.7 24 202-225 5-28 (183)
337 3b5x_A Lipid A export ATP-bind 93.7 0.22 7.7E-06 54.4 10.2 23 203-225 370-392 (582)
338 2j37_W Signal recognition part 93.7 0.31 1.1E-05 51.8 10.9 28 200-227 99-126 (504)
339 1s96_A Guanylate kinase, GMP k 93.6 0.034 1.2E-06 52.4 3.1 23 203-225 17-39 (219)
340 1nn5_A Similar to deoxythymidy 93.6 0.034 1.2E-06 52.1 3.1 25 203-227 10-34 (215)
341 1rj9_A FTSY, signal recognitio 93.6 0.036 1.2E-06 55.1 3.4 26 202-227 102-127 (304)
342 2pt5_A Shikimate kinase, SK; a 93.6 0.034 1.2E-06 49.7 3.0 22 204-225 2-23 (168)
343 2pbr_A DTMP kinase, thymidylat 93.6 0.034 1.2E-06 51.1 3.0 23 204-226 2-24 (195)
344 1aky_A Adenylate kinase; ATP:A 93.6 0.033 1.1E-06 52.5 2.9 23 203-225 5-27 (220)
345 1z7x_W Ribonuclease inhibitor; 93.6 0.06 2.1E-06 57.0 5.3 108 530-649 314-439 (461)
346 1tue_A Replication protein E1; 93.6 0.048 1.6E-06 50.2 3.8 38 186-226 45-82 (212)
347 2wwf_A Thymidilate kinase, put 93.5 0.034 1.2E-06 51.9 2.9 26 202-227 10-35 (212)
348 1fx0_B ATP synthase beta chain 93.5 0.17 5.8E-06 53.1 8.2 65 188-257 154-219 (498)
349 1zd8_A GTP:AMP phosphotransfer 93.5 0.034 1.2E-06 52.8 2.8 23 203-225 8-30 (227)
350 2pez_A Bifunctional 3'-phospho 93.5 0.043 1.5E-06 49.8 3.4 25 202-226 5-29 (179)
351 2z0h_A DTMP kinase, thymidylat 93.4 0.037 1.3E-06 50.9 3.0 23 204-226 2-24 (197)
352 4e22_A Cytidylate kinase; P-lo 93.4 0.039 1.3E-06 53.4 3.1 23 203-225 28-50 (252)
353 4a74_A DNA repair and recombin 93.4 0.042 1.4E-06 52.0 3.4 44 203-246 26-72 (231)
354 1gtv_A TMK, thymidylate kinase 93.3 0.022 7.6E-07 53.4 1.2 24 204-227 2-25 (214)
355 2v54_A DTMP kinase, thymidylat 93.3 0.042 1.4E-06 51.0 3.2 24 203-226 5-28 (204)
356 2ehv_A Hypothetical protein PH 93.3 0.041 1.4E-06 52.9 3.1 22 203-224 31-52 (251)
357 2f6r_A COA synthase, bifunctio 93.3 0.05 1.7E-06 53.5 3.8 23 201-223 74-96 (281)
358 1zak_A Adenylate kinase; ATP:A 93.3 0.034 1.2E-06 52.6 2.4 23 203-225 6-28 (222)
359 3fb4_A Adenylate kinase; psych 93.3 0.04 1.4E-06 51.7 3.0 22 204-225 2-23 (216)
360 3e1s_A Exodeoxyribonuclease V, 93.3 0.083 2.8E-06 57.6 5.8 105 203-321 205-315 (574)
361 2grj_A Dephospho-COA kinase; T 93.2 0.046 1.6E-06 50.3 3.2 26 200-225 10-35 (192)
362 2i3b_A HCR-ntpase, human cance 93.2 0.037 1.3E-06 50.8 2.6 23 204-226 3-25 (189)
363 2f1r_A Molybdopterin-guanine d 93.2 0.03 1E-06 50.5 1.8 25 203-227 3-27 (171)
364 2og2_A Putative signal recogni 93.2 0.084 2.9E-06 53.6 5.4 27 201-227 156-182 (359)
365 3tif_A Uncharacterized ABC tra 93.2 0.042 1.4E-06 52.5 3.0 23 203-225 32-54 (235)
366 3k1j_A LON protease, ATP-depen 93.2 0.05 1.7E-06 60.0 3.9 44 177-226 41-84 (604)
367 2pcj_A ABC transporter, lipopr 93.1 0.043 1.5E-06 51.9 3.0 23 203-225 31-53 (224)
368 1g41_A Heat shock protein HSLU 93.1 0.054 1.8E-06 56.6 3.9 50 177-226 15-74 (444)
369 1m7g_A Adenylylsulfate kinase; 93.1 0.052 1.8E-06 50.8 3.5 26 202-227 25-50 (211)
370 1q57_A DNA primase/helicase; d 93.1 0.22 7.5E-06 53.5 8.9 53 203-259 243-295 (503)
371 1vht_A Dephospho-COA kinase; s 93.1 0.052 1.8E-06 51.1 3.5 23 202-224 4-26 (218)
372 3dl0_A Adenylate kinase; phosp 93.1 0.044 1.5E-06 51.4 3.0 22 204-225 2-23 (216)
373 2onk_A Molybdate/tungstate ABC 93.1 0.046 1.6E-06 52.3 3.1 23 203-225 25-47 (240)
374 3cmu_A Protein RECA, recombina 93.0 0.12 4E-06 63.6 7.1 83 202-292 1427-1515(2050)
375 3b85_A Phosphate starvation-in 93.0 0.066 2.3E-06 50.0 3.9 22 204-225 24-45 (208)
376 3b9q_A Chloroplast SRP recepto 93.0 0.057 1.9E-06 53.7 3.6 26 202-227 100-125 (302)
377 3lnc_A Guanylate kinase, GMP k 92.9 0.034 1.2E-06 52.9 1.9 23 203-225 28-51 (231)
378 1zu4_A FTSY; GTPase, signal re 92.9 0.11 3.9E-06 51.9 5.7 28 200-227 103-130 (320)
379 3b60_A Lipid A export ATP-bind 92.9 0.23 7.8E-06 54.4 8.7 23 203-225 370-392 (582)
380 2ffh_A Protein (FFH); SRP54, s 92.9 0.25 8.5E-06 51.3 8.5 26 202-227 98-123 (425)
381 3a8t_A Adenylate isopentenyltr 92.9 0.065 2.2E-06 53.6 3.8 24 202-225 40-63 (339)
382 3gfo_A Cobalt import ATP-bindi 92.8 0.051 1.7E-06 53.1 3.0 22 204-225 36-57 (275)
383 2hf9_A Probable hydrogenase ni 92.8 0.061 2.1E-06 50.8 3.5 25 201-225 37-61 (226)
384 1b0u_A Histidine permease; ABC 92.7 0.053 1.8E-06 52.7 3.0 23 203-225 33-55 (262)
385 2q6t_A DNAB replication FORK h 92.7 0.29 9.8E-06 51.6 8.9 52 203-258 201-252 (444)
386 3exa_A TRNA delta(2)-isopenten 92.7 0.062 2.1E-06 53.1 3.4 23 203-225 4-26 (322)
387 3goz_A Leucine-rich repeat-con 92.7 0.019 6.5E-07 58.9 -0.3 55 595-650 168-235 (362)
388 1np6_A Molybdopterin-guanine d 92.7 0.054 1.9E-06 48.9 2.8 25 202-226 6-30 (174)
389 3un9_A NLR family member X1; l 92.7 0.015 5E-07 60.0 -1.2 58 592-650 181-249 (372)
390 1ji0_A ABC transporter; ATP bi 92.6 0.056 1.9E-06 51.7 3.0 23 203-225 33-55 (240)
391 3d3q_A TRNA delta(2)-isopenten 92.6 0.061 2.1E-06 54.0 3.2 23 203-225 8-30 (340)
392 1g6h_A High-affinity branched- 92.6 0.058 2E-06 52.3 3.0 23 203-225 34-56 (257)
393 4g1u_C Hemin import ATP-bindin 92.6 0.058 2E-06 52.5 3.0 23 203-225 38-60 (266)
394 3p32_A Probable GTPase RV1496/ 92.5 0.12 3.9E-06 52.8 5.4 39 186-226 65-103 (355)
395 3r20_A Cytidylate kinase; stru 92.5 0.06 2.1E-06 51.1 3.0 23 203-225 10-32 (233)
396 1sgw_A Putative ABC transporte 92.5 0.05 1.7E-06 51.0 2.4 22 204-225 37-58 (214)
397 2olj_A Amino acid ABC transpor 92.5 0.059 2E-06 52.3 3.0 23 203-225 51-73 (263)
398 2d2e_A SUFC protein; ABC-ATPas 92.5 0.062 2.1E-06 51.8 3.2 22 204-225 31-52 (250)
399 2r6a_A DNAB helicase, replicat 92.5 0.27 9.1E-06 52.0 8.3 50 203-256 204-253 (454)
400 1mv5_A LMRA, multidrug resista 92.5 0.065 2.2E-06 51.4 3.2 23 203-225 29-51 (243)
401 3ake_A Cytidylate kinase; CMP 92.5 0.061 2.1E-06 50.0 3.0 22 204-225 4-25 (208)
402 2zej_A Dardarin, leucine-rich 92.5 0.059 2E-06 49.0 2.8 22 204-225 4-25 (184)
403 3be4_A Adenylate kinase; malar 92.5 0.053 1.8E-06 51.0 2.5 23 203-225 6-28 (217)
404 2wji_A Ferrous iron transport 92.5 0.085 2.9E-06 47.0 3.8 23 203-225 4-26 (165)
405 3foz_A TRNA delta(2)-isopenten 92.4 0.076 2.6E-06 52.3 3.6 25 201-225 9-33 (316)
406 3qf4_A ABC transporter, ATP-bi 92.4 0.44 1.5E-05 52.1 10.2 23 203-225 370-392 (587)
407 1oix_A RAS-related protein RAB 92.4 0.065 2.2E-06 49.1 3.1 24 202-225 29-52 (191)
408 2xb4_A Adenylate kinase; ATP-b 92.4 0.063 2.2E-06 50.7 3.0 22 204-225 2-23 (223)
409 2zu0_C Probable ATP-dependent 92.4 0.066 2.3E-06 52.2 3.1 23 203-225 47-69 (267)
410 1vpl_A ABC transporter, ATP-bi 92.3 0.065 2.2E-06 51.8 3.0 23 203-225 42-64 (256)
411 1e4v_A Adenylate kinase; trans 92.3 0.066 2.2E-06 50.2 3.0 22 204-225 2-23 (214)
412 2qmh_A HPR kinase/phosphorylas 92.3 0.073 2.5E-06 48.7 3.1 23 203-225 35-57 (205)
413 3nwj_A ATSK2; P loop, shikimat 92.3 0.051 1.7E-06 52.3 2.2 22 204-225 50-71 (250)
414 3crm_A TRNA delta(2)-isopenten 92.3 0.07 2.4E-06 53.2 3.2 23 203-225 6-28 (323)
415 2wsm_A Hydrogenase expression/ 92.3 0.075 2.6E-06 49.9 3.3 26 201-226 29-54 (221)
416 2ixe_A Antigen peptide transpo 92.2 0.067 2.3E-06 52.2 3.0 23 203-225 46-68 (271)
417 4a82_A Cystic fibrosis transme 92.2 0.21 7E-06 54.7 7.2 23 203-225 368-390 (578)
418 2ghi_A Transport protein; mult 92.2 0.068 2.3E-06 51.8 3.0 23 203-225 47-69 (260)
419 1ltq_A Polynucleotide kinase; 92.2 0.071 2.4E-06 52.9 3.2 22 203-224 3-24 (301)
420 2qi9_C Vitamin B12 import ATP- 92.2 0.069 2.3E-06 51.4 3.0 22 204-225 28-49 (249)
421 2j9r_A Thymidine kinase; TK1, 92.2 0.12 4.2E-06 47.9 4.5 107 203-322 29-138 (214)
422 3zvl_A Bifunctional polynucleo 92.2 0.075 2.6E-06 55.5 3.5 26 200-225 256-281 (416)
423 1ak2_A Adenylate kinase isoenz 92.1 0.074 2.5E-06 50.6 3.1 23 203-225 17-39 (233)
424 2yhs_A FTSY, cell division pro 92.1 0.14 4.7E-06 54.0 5.3 27 201-227 292-318 (503)
425 2nq2_C Hypothetical ABC transp 92.1 0.072 2.5E-06 51.4 3.0 22 204-225 33-54 (253)
426 2f9l_A RAB11B, member RAS onco 92.1 0.071 2.4E-06 49.2 2.8 23 203-225 6-28 (199)
427 2eyu_A Twitching motility prot 92.1 0.081 2.8E-06 51.3 3.4 108 203-323 26-134 (261)
428 3bgw_A DNAB-like replicative h 92.1 0.56 1.9E-05 49.2 10.1 50 203-257 198-247 (444)
429 2dyk_A GTP-binding protein; GT 92.1 0.088 3E-06 46.3 3.3 23 203-225 2-24 (161)
430 2p1m_B Transport inhibitor res 92.0 0.043 1.5E-06 60.3 1.5 52 592-643 182-238 (594)
431 2yz2_A Putative ABC transporte 92.0 0.073 2.5E-06 51.8 3.0 23 203-225 34-56 (266)
432 2ihy_A ABC transporter, ATP-bi 92.0 0.073 2.5E-06 52.2 3.0 23 204-226 49-71 (279)
433 2v9p_A Replication protein E1; 92.0 0.077 2.6E-06 52.5 3.1 23 203-225 127-149 (305)
434 2wjg_A FEOB, ferrous iron tran 92.0 0.13 4.3E-06 46.7 4.5 24 202-225 7-30 (188)
435 1yrb_A ATP(GTP)binding protein 92.0 0.1 3.4E-06 50.6 3.9 28 200-227 12-39 (262)
436 3ogk_B Coronatine-insensitive 91.9 0.052 1.8E-06 59.6 2.0 57 592-648 218-278 (592)
437 3end_A Light-independent proto 91.9 0.09 3.1E-06 52.4 3.5 43 199-244 38-80 (307)
438 1j8m_F SRP54, signal recogniti 91.8 0.35 1.2E-05 47.7 7.7 90 202-294 98-192 (297)
439 2ged_A SR-beta, signal recogni 91.7 0.098 3.3E-06 47.8 3.4 24 202-225 48-71 (193)
440 2nzj_A GTP-binding protein REM 91.7 0.092 3.2E-06 46.9 3.1 24 203-226 5-28 (175)
441 2vp4_A Deoxynucleoside kinase; 91.6 0.086 2.9E-06 50.1 2.9 24 202-225 20-43 (230)
442 3sop_A Neuronal-specific septi 91.6 0.091 3.1E-06 51.2 3.1 23 204-226 4-26 (270)
443 1a7j_A Phosphoribulokinase; tr 91.6 0.044 1.5E-06 54.1 0.9 24 202-225 5-28 (290)
444 1nlf_A Regulatory protein REPA 91.6 0.091 3.1E-06 51.5 3.1 23 203-225 31-53 (279)
445 3dzd_A Transcriptional regulat 91.5 0.2 6.9E-06 51.2 5.8 48 177-226 129-176 (368)
446 2ce2_X GTPase HRAS; signaling 91.5 0.091 3.1E-06 46.3 2.8 22 204-225 5-26 (166)
447 1cr0_A DNA primase/helicase; R 91.5 0.092 3.2E-06 52.0 3.1 51 203-257 36-86 (296)
448 1z2a_A RAS-related protein RAB 91.5 0.093 3.2E-06 46.5 2.8 23 203-225 6-28 (168)
449 4eaq_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 49.3 3.5 26 202-227 26-51 (229)
450 3mfy_A V-type ATP synthase alp 91.5 0.37 1.3E-05 51.1 7.6 59 188-254 216-275 (588)
451 2ra8_A Uncharacterized protein 91.4 0.079 2.7E-06 54.1 2.6 33 529-562 193-227 (362)
452 2pjz_A Hypothetical protein ST 91.4 0.096 3.3E-06 50.8 3.0 22 204-225 32-53 (263)
453 3vr4_D V-type sodium ATPase su 91.3 0.22 7.4E-06 51.8 5.7 102 188-292 140-258 (465)
454 3gqb_B V-type ATP synthase bet 91.3 0.21 7.3E-06 51.8 5.6 102 188-292 136-261 (464)
455 2yl4_A ATP-binding cassette SU 91.2 0.23 8E-06 54.4 6.3 23 203-225 371-393 (595)
456 2gj8_A MNME, tRNA modification 91.2 0.11 3.7E-06 46.7 3.1 23 203-225 5-27 (172)
457 3q72_A GTP-binding protein RAD 91.2 0.099 3.4E-06 46.3 2.7 22 204-225 4-25 (166)
458 2v3c_C SRP54, signal recogniti 91.2 0.11 3.9E-06 54.2 3.5 27 201-227 98-124 (432)
459 1svm_A Large T antigen; AAA+ f 91.1 0.11 3.7E-06 53.2 3.2 24 202-225 169-192 (377)
460 3sb4_A Hypothetical leucine ri 91.1 0.25 8.6E-06 49.6 6.0 50 592-643 271-324 (329)
461 3q85_A GTP-binding protein REM 91.0 0.12 4E-06 45.9 3.1 22 204-225 4-25 (169)
462 1q3t_A Cytidylate kinase; nucl 91.0 0.11 3.8E-06 49.5 3.1 26 200-225 14-39 (236)
463 2lkc_A Translation initiation 91.0 0.14 4.8E-06 45.9 3.6 24 202-225 8-31 (178)
464 2ocp_A DGK, deoxyguanosine kin 91.0 0.12 4.2E-06 49.4 3.3 25 202-226 2-26 (241)
465 1u8z_A RAS-related protein RAL 91.0 0.11 3.8E-06 45.9 2.9 24 203-226 5-28 (168)
466 1u0j_A DNA replication protein 91.0 0.2 6.9E-06 48.3 4.8 36 188-225 92-127 (267)
467 1svi_A GTP-binding protein YSX 91.0 0.14 4.8E-06 46.7 3.6 24 202-225 23-46 (195)
468 2erx_A GTP-binding protein DI- 91.0 0.12 4.1E-06 45.9 3.1 22 204-225 5-26 (172)
469 2bbs_A Cystic fibrosis transme 90.9 0.11 3.8E-06 51.2 3.0 24 203-226 65-88 (290)
470 1kao_A RAP2A; GTP-binding prot 90.9 0.11 3.9E-06 45.8 2.9 22 204-225 5-26 (167)
471 3cmu_A Protein RECA, recombina 90.9 0.29 9.9E-06 60.2 7.1 84 203-294 384-473 (2050)
472 3eph_A TRNA isopentenyltransfe 90.9 0.12 4.2E-06 52.9 3.3 23 203-225 3-25 (409)
473 1z08_A RAS-related protein RAB 90.9 0.11 3.9E-06 46.0 2.8 23 203-225 7-29 (170)
474 3con_A GTPase NRAS; structural 90.9 0.11 3.9E-06 47.2 2.9 22 204-225 23-44 (190)
475 3cmw_A Protein RECA, recombina 90.9 0.27 9.1E-06 59.7 6.7 81 203-291 384-470 (1706)
476 3lv8_A DTMP kinase, thymidylat 90.8 0.26 8.8E-06 46.8 5.3 35 203-239 28-62 (236)
477 1c1y_A RAS-related protein RAP 90.8 0.12 4E-06 45.8 2.8 22 204-225 5-26 (167)
478 3sb4_A Hypothetical leucine ri 90.8 0.27 9.4E-06 49.3 5.9 73 553-647 225-304 (329)
479 1ek0_A Protein (GTP-binding pr 90.8 0.12 4E-06 45.8 2.9 23 204-226 5-27 (170)
480 3vr4_A V-type sodium ATPase ca 90.8 0.59 2E-05 49.8 8.4 59 188-254 221-280 (600)
481 1m7b_A RND3/RHOE small GTP-bin 90.8 0.12 4E-06 46.9 2.8 23 203-225 8-30 (184)
482 2yv5_A YJEQ protein; hydrolase 90.8 0.18 6.2E-06 50.0 4.4 33 186-226 156-188 (302)
483 1z0j_A RAB-22, RAS-related pro 90.8 0.12 4.1E-06 45.9 2.9 23 204-226 8-30 (170)
484 3fvq_A Fe(3+) IONS import ATP- 90.8 0.12 4.1E-06 52.4 3.1 23 203-225 31-53 (359)
485 2cxx_A Probable GTP-binding pr 90.8 0.13 4.3E-06 46.8 3.1 22 204-225 3-24 (190)
486 3ihw_A Centg3; RAS, centaurin, 90.7 0.12 4.1E-06 47.0 2.8 22 204-225 22-43 (184)
487 1nij_A Hypothetical protein YJ 90.7 0.12 4E-06 51.9 3.0 25 201-225 3-27 (318)
488 3kta_A Chromosome segregation 90.7 0.13 4.5E-06 46.5 3.1 21 204-224 28-48 (182)
489 3ld9_A DTMP kinase, thymidylat 90.6 0.26 8.9E-06 46.3 5.1 28 201-228 20-47 (223)
490 1ls1_A Signal recognition part 90.6 0.15 5E-06 50.5 3.6 26 202-227 98-123 (295)
491 1ky3_A GTP-binding protein YPT 90.6 0.12 4.2E-06 46.4 2.9 24 202-225 8-31 (182)
492 4akg_A Glutathione S-transfera 90.6 1.2 4E-05 57.0 12.3 125 205-352 1270-1431(2695)
493 2dr3_A UPF0273 protein PH0284; 90.6 0.13 4.4E-06 49.1 3.1 38 203-243 24-61 (247)
494 1fzq_A ADP-ribosylation factor 90.6 0.16 5.5E-06 45.9 3.6 24 202-225 16-39 (181)
495 1wms_A RAB-9, RAB9, RAS-relate 90.6 0.13 4.3E-06 46.2 2.9 24 202-225 7-30 (177)
496 3goz_A Leucine-rich repeat-con 90.6 0.13 4.4E-06 52.6 3.2 110 528-650 21-148 (362)
497 2c61_A A-type ATP synthase non 90.6 0.17 5.9E-06 52.8 4.1 101 188-291 141-258 (469)
498 1g16_A RAS-related protein SEC 90.6 0.13 4.3E-06 45.7 2.8 22 204-225 5-26 (170)
499 2r9v_A ATP synthase subunit al 90.5 0.4 1.4E-05 50.4 6.9 97 188-292 164-277 (515)
500 3vkw_A Replicase large subunit 90.5 0.68 2.3E-05 48.1 8.6 26 199-224 158-183 (446)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.4e-50 Score=442.03 Aligned_cols=316 Identities=17% Similarity=0.282 Sum_probs=256.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhc--ccccccCCCCEEEEEEeCCCC--CHHHHHHHHH
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYN--DKAVADSKFDVKAWVCVSDNF--DVFNILKALL 255 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il 255 (661)
|||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++. +|++++||++++.+ +...++..|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~-~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 599999999999997642 34578999999999999999999998 567776 99999999999985 8899999999
Q ss_pred HHhccCCC-------CCCCHHHHHHHHHhhcCCc-eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhcc
Q 006107 256 ESITSAAS-------DLNTLNEVQVQLKKAVDGK-RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAST 327 (661)
Q Consensus 256 ~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~ 327 (661)
.+++.... +..+.+.+...+++.+.++ |+||||||||+.+...|.. .+||+||||||+..++..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHH
Confidence 99986522 1224566788999999996 9999999999864333432 279999999999999988
Q ss_pred cCCC-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHccccc
Q 006107 328 MGPI-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDILDSKIW 406 (661)
Q Consensus 328 ~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~~~~~~ 406 (661)
++.. ..++|++|+.++||+||.++++.... ++.+.+++++|+++|+|+||||+++|+.++.++. +|...+.+..+
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~ 356 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLE 356 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhh
Confidence 7633 67999999999999999999876532 4577889999999999999999999999987743 33333333333
Q ss_pred cccCCCCchHHHHHhhcCCCHHhhHHHH-----------HhhcCCCCcccChhhHHHHHHhC--CccccCCCCccHHHHH
Q 006107 407 DLHQQSSILPVLRLSYHHLPSHLKRCFA-----------FCAIFPKDYEFTEKGLIFLWMAG--GIIRQSRNSEQMEDLG 473 (661)
Q Consensus 407 ~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~W~ae--g~i~~~~~~~~~e~~~ 473 (661)
.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.......+.++++
T Consensus 357 ~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 357 SR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp HH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred cc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 22 2367888999999999999999999 999999999998 8999999 9998755467788888
Q ss_pred HHHHHHHHhCCceeeccCC-CCcEEEchhHHHHHHHHhhhceE
Q 006107 474 SKCFHDLVSRSIFQQTSSG-SSKFVMHDLIHDFAELVSRETIL 515 (661)
Q Consensus 474 ~~~l~~L~~rsll~~~~~~-~~~~~mH~lv~~~a~~~~~~~~~ 515 (661)
+ ||++|+++||+++...+ ..+|+|||+||+||++++.++++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8 99999999999987643 35799999999999998877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-39 Score=394.63 Aligned_cols=313 Identities=21% Similarity=0.276 Sum_probs=247.8
Q ss_pred CCCCcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc-ccCCCCEEEEEEeCCCCC--HH
Q 006107 172 SVPTEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV-ADSKFDVKAWVCVSDNFD--VF 248 (661)
Q Consensus 172 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~v~~~~~--~~ 248 (661)
.|+....||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ...+|+.++|+++++..+ ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~--~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN--GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT--TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc--CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 33455679999999999999997643 45789999999999999999999998654 332456888999998543 44
Q ss_pred HHHHHHHHHhccCCC----CCCCHHHHHHHHHhhcCCc--eEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 249 NILKALLESITSAAS----DLNTLNEVQVQLKKAVDGK--RFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 249 ~~~~~il~~l~~~~~----~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
..+..++..+..... ...+.+.+...++..+.++ |+||||||+|+. ..|..+ .+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 556677777765432 2356788888999999877 999999999975 344432 5789999999999
Q ss_pred hhhcc-cCCCceeecCC-CChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHH
Q 006107 323 DVAST-MGPIEHYNLKS-LLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDI 400 (661)
Q Consensus 323 ~v~~~-~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~ 400 (661)
.++.. ++....+.+.+ |+++++++||...++... +...+++++|+++|+|+||||+++|++|+.++ ..|...
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 98854 45567899996 999999999998884322 23345689999999999999999999999874 345555
Q ss_pred Hccccccc----cC-----CCCchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHH
Q 006107 401 LDSKIWDL----HQ-----QSSILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMED 471 (661)
Q Consensus 401 ~~~~~~~~----~~-----~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~ 471 (661)
++...... .. ...+..+|.+||+.||+++|.||+|||+||+++.|++..++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 54332211 11 13588999999999999999999999999999999999999999654 36
Q ss_pred HHHHHHHHHHhCCceeeccCCC-CcEEEchhHHHHHHHHhhhc
Q 006107 472 LGSKCFHDLVSRSIFQQTSSGS-SKFVMHDLIHDFAELVSRET 513 (661)
Q Consensus 472 ~~~~~l~~L~~rsll~~~~~~~-~~~~mH~lv~~~a~~~~~~~ 513 (661)
.++++|++|+++||++....+. .+|+||++||+|++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 6789999999999999776542 35999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-39 Score=363.00 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=227.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCE-EEEEEeCCCCCHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDV-KAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~il~ 256 (661)
..|||+.++++|.++|.... ..++|+|+||||+||||||+++|++.+++. +|+. ++|+++++.++...++..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d---~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC---SSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC---CCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999997532 367999999999999999999999877777 8886 999999999998888888877
Q ss_pred HhccCC---C-CC-------CCHHHHHHHHHhhc---CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 257 SITSAA---S-DL-------NTLNEVQVQLKKAV---DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 257 ~l~~~~---~-~~-------~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
.+.... . .. .+.+.+...+++.+ .++|+||||||+|+. ..|..+ + +||+||||||+.
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543211 1 11 12344566676655 789999999999984 566553 2 699999999999
Q ss_pred hhhcccCCCceeecC------CCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccC--CH
Q 006107 323 DVASTMGPIEHYNLK------SLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTT--RH 394 (661)
Q Consensus 323 ~v~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~--~~ 394 (661)
.++..+.....+.++ +|+.+|||+||.+.. +... .++..+| |+|+||||+++|+.|+.+ +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 888644333356666 999999999999984 3221 1223333 999999999999999988 78
Q ss_pred HHHHHHHccccccccCCCCchHHHHHhhcCCCHHh-hHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHHH
Q 006107 395 AAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHL-KRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDLG 473 (661)
Q Consensus 395 ~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~ 473 (661)
+.|... ....+..+|.+||+.||+++ |+||++||+||+++.|+.+.++.+|+++| ++.+
T Consensus 345 eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 889763 13578999999999999999 99999999999999999999999999887 1357
Q ss_pred HHHHHHHHhCCceeeccCCCCcEEEchhHHHHH
Q 006107 474 SKCFHDLVSRSIFQQTSSGSSKFVMHDLIHDFA 506 (661)
Q Consensus 474 ~~~l~~L~~rsll~~~~~~~~~~~mH~lv~~~a 506 (661)
+.+|++|+++|||+... +..+|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 88999999999999853 235799999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=333.01 Aligned_cols=303 Identities=21% Similarity=0.303 Sum_probs=230.4
Q ss_pred cCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc-ccCCC-CEEEEEEeCCCCCHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV-ADSKF-DVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f-~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+.||||+.++++|.++|.... ++.++|+|+||||+||||||.+++++..+ .. +| +.++|++++.. +...++..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK--GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST--TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc--CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCC-chHHHHHH
Confidence 4569999999999999997542 45689999999999999999999998755 55 78 58999999875 33334433
Q ss_pred H---HHHhccC----CCCCCCHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh
Q 006107 254 L---LESITSA----ASDLNTLNEVQVQLKKAVDG--KRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV 324 (661)
Q Consensus 254 i---l~~l~~~----~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v 324 (661)
+ +..+... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcHH
Confidence 3 3444421 11334567777778877765 7899999999974 2222 22 468999999999988
Q ss_pred hcccCCCceeec---CCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHH
Q 006107 325 ASTMGPIEHYNL---KSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRTTRHAAWDDIL 401 (661)
Q Consensus 325 ~~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~~~~~~w~~~~ 401 (661)
+..+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.++... ..|...+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 76543 233443 69999999999999885421 22235678999999999999999999998873 2566555
Q ss_pred ccccccc----c-----CCCCchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHHHH
Q 006107 402 DSKIWDL----H-----QQSSILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQMEDL 472 (661)
Q Consensus 402 ~~~~~~~----~-----~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 472 (661)
+...... . ....+..++..||+.||++.|.||++||+||+++.|+...+..+|.++ .+.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~ 410 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEE 410 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHH
Confidence 4332111 1 113678899999999999999999999999999999999999999543 244
Q ss_pred HHHHHHHHHhCCceeeccCC-CCcEEEchhHHHHHHHHh
Q 006107 473 GSKCFHDLVSRSIFQQTSSG-SSKFVMHDLIHDFAELVS 510 (661)
Q Consensus 473 ~~~~l~~L~~rsll~~~~~~-~~~~~mH~lv~~~a~~~~ 510 (661)
++.++++|+++|||+....+ ..+|+||+++|++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 67889999999999866543 247999999999999874
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.75 E-value=5.5e-17 Score=168.79 Aligned_cols=291 Identities=14% Similarity=0.140 Sum_probs=180.1
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC------CHH
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF------DVF 248 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~------~~~ 248 (661)
.+..|+||+.++++|.+++... +++.|+|++|+|||||++++.+.. . .+|+++.... +..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCCHH
Confidence 4567999999999999988642 489999999999999999998752 1 6777765432 556
Q ss_pred HHHHHHHHHhcc-----------------CCC-CCCCHHHHHHHHHhhcCC-ceEEEEEeCCCCCCh------hhHhhhh
Q 006107 249 NILKALLESITS-----------------AAS-DLNTLNEVQVQLKKAVDG-KRFLLVLDDVRNEDY------SLWVDLK 303 (661)
Q Consensus 249 ~~~~~il~~l~~-----------------~~~-~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~~~l~ 303 (661)
.++..+...+.. ... .......+...+.+.... ++++|||||+++.+. ..+....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666666655432 000 123455566666555542 389999999988542 1222222
Q ss_pred cccccCCCCcEEEEEeCChhhhcc-----------cCC-CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHH
Q 006107 304 APFLAAAPNSKMIITTRHSDVAST-----------MGP-IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKV 371 (661)
Q Consensus 304 ~~l~~~~~gs~ilvTTr~~~v~~~-----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I 371 (661)
..+....++.++|+|++....... .+. ...+++.+|+.+|+.+++.......+.. ...+.+..|
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~----~~~~~~~~i 231 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD----VPENEIEEA 231 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHH
Confidence 222222357889999887543111 111 2478999999999999998754221111 113467899
Q ss_pred HHHcCCChHHHHHHHHHhcc-CCHHHHH-HHHccccccccCCCCchHHHHHhhcCC---CHHhhHHHHHhhcCCCCcccC
Q 006107 372 VGKCRGLPLAAKTLEGLLRT-TRHAAWD-DILDSKIWDLHQQSSILPVLRLSYHHL---PSHLKRCFAFCAIFPKDYEFT 446 (661)
Q Consensus 372 ~~~~~G~PLai~~~~~~l~~-~~~~~w~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~i~ 446 (661)
+..|+|+|+++..++..+.. .+...+. .+.+. +...+.-.+..+ ++..+..+..+|. .. ++
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~ 297 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL--GY--NR 297 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CS
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CC
Confidence 99999999999998875432 2222221 11111 111122222233 7889999999998 22 34
Q ss_pred hhhHHHHHHhCCccccCCCCccHHHHHHHHHHHHHhCCceeeccCCCCcEE-EchhHHHHHH
Q 006107 447 EKGLIFLWMAGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSSGSSKFV-MHDLIHDFAE 507 (661)
Q Consensus 447 ~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~-mH~lv~~~a~ 507 (661)
...+.....+.. ++.+ ......+++.|++.+||.... + .|. .|++++++.+
T Consensus 298 ~~~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~~-~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEED-N--TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEET-T--EEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEecC-C--EEEEecHHHHHHHc
Confidence 445544332210 0111 244568899999999998763 2 354 5888888753
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.73 E-value=9.6e-17 Score=171.03 Aligned_cols=315 Identities=13% Similarity=0.045 Sum_probs=187.2
Q ss_pred CccccchhhHHHHHHHH-hcCCCC--CCeEEEEE--eccCCChHHHHHHHHhcccccc--cCCCC-EEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMV-NTSSDH--ANFVVIPI--VGMGGIGKTTLAREVYNDKAVA--DSKFD-VKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L-~~~~~~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~v~~~~~~~ 248 (661)
..++||+.++++|.+++ .....+ .....+.| +|++|+|||||++.+++..... ...+. ..+|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 432111 23346667 9999999999999998864321 00122 46788877777888
Q ss_pred HHHHHHHHHhccCCCC-CCCHHHHHHHHHhhcC--CceEEEEEeCCCCCC------hhhHhhhhcccccC---C--CCcE
Q 006107 249 NILKALLESITSAASD-LNTLNEVQVQLKKAVD--GKRFLLVLDDVRNED------YSLWVDLKAPFLAA---A--PNSK 314 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~ 314 (661)
.++..++.+++..... ..+...+...+.+.+. +++++|||||+++.. ...+..+...+... . .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999988654321 2334555566666654 779999999998742 23343333333221 2 3445
Q ss_pred EEEEeCChhhhccc--------C-CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcC------CCh
Q 006107 315 MIITTRHSDVASTM--------G-PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCR------GLP 379 (661)
Q Consensus 315 ilvTTr~~~v~~~~--------~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~------G~P 379 (661)
+|+||+...+...+ . ....+.+.+++.++++++|...+...... .....+....|++.|+ |+|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCcH
Confidence 78788754422111 1 12239999999999999997654211000 0112456788999999 999
Q ss_pred HHHHHHHHHhc------c--C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCC--CCcccChh
Q 006107 380 LAAKTLEGLLR------T--T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFP--KDYEFTEK 448 (661)
Q Consensus 380 Lai~~~~~~l~------~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~ 448 (661)
..+..+..... . . +.+.+......... ...+.-++..||++.+.++..++.+. .+..++..
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 76655543221 1 1 34444444332110 22344567889999999999888754 23345555
Q ss_pred hHHHHHHhCCccccCCCCccHHHHHHHHHHHHHhCCceeeccCC---CCcEEEchhH
Q 006107 449 GLIFLWMAGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSSG---SSKFVMHDLI 502 (661)
Q Consensus 449 ~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~---~~~~~mH~lv 502 (661)
.+...+..... ...............++++|++.+||.....+ ..+|++|.+.
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 332 LLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55544421000 00000111123456789999999999775432 2346666555
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=1.9e-16 Score=165.23 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=174.8
Q ss_pred CcCccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-----CCHHH
Q 006107 175 TEHEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-----FDVFN 249 (661)
Q Consensus 175 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~ 249 (661)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+.+... . ..+|+++... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINELN-----L-PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHHT-----C-CEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhcC-----C-CEEEEEchhhccccCCCHHH
Confidence 45679999999999999 632 4899999999999999999987632 1 2578887642 34455
Q ss_pred HHHHHHHHhcc-------------CC-----C-----------CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh---h
Q 006107 250 ILKALLESITS-------------AA-----S-----------DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY---S 297 (661)
Q Consensus 250 ~~~~il~~l~~-------------~~-----~-----------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---~ 297 (661)
++..+.+.+.. .. + .......+...+.+... ++++|||||+++.+. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 55554443311 00 0 12345555555555433 499999999987532 2
Q ss_pred hHhhhhcccccCCCCcEEEEEeCChhhhcc----------c-CC-CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhH
Q 006107 298 LWVDLKAPFLAAAPNSKMIITTRHSDVAST----------M-GP-IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISE 365 (661)
Q Consensus 298 ~~~~l~~~l~~~~~gs~ilvTTr~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~ 365 (661)
.|..+...+.....+.++|+|++....... . +. ...+.+.+|+.+++.+++........... ..
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~-- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD-- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC--
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc--
Confidence 233333333332347899999997643211 1 11 25789999999999999987542111111 11
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhccC-CHHHHHH-HHccccccccCCCCchHHHH-Hhh--cCCCHHhhHHHHHhhcCC
Q 006107 366 SFRKKVVGKCRGLPLAAKTLEGLLRTT-RHAAWDD-ILDSKIWDLHQQSSILPVLR-LSY--HHLPSHLKRCFAFCAIFP 440 (661)
Q Consensus 366 ~~~~~I~~~~~G~PLai~~~~~~l~~~-~~~~w~~-~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cfl~~s~fp 440 (661)
. ..|+..|+|+|+++..++..+... +...|.. +.+... ..+...+. +.+ ..||+..+..+..+|.
T Consensus 232 -~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-- 301 (357)
T 2fna_A 232 -Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK-- 301 (357)
T ss_dssp -H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--
T ss_pred -H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc--
Confidence 1 789999999999999998776432 3333321 111100 00111121 111 1688999999999998
Q ss_pred CCcccChhhHHHHHH-hCCccccCCCCccHHHHHHHHHHHHHhCCceeeccCCCCcEE-EchhHHHHH
Q 006107 441 KDYEFTEKGLIFLWM-AGGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSSGSSKFV-MHDLIHDFA 506 (661)
Q Consensus 441 ~~~~i~~~~li~~W~-aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~-mH~lv~~~a 506 (661)
+. +...+....- ..|. ..+ ......+++.|++.+||..... .|+ .|++++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~------~~~-~~~~~~~L~~L~~~gli~~~~~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI------EIS-DSEIYNYLTQLTKHSWIIKEGE---KYCPSEPLISLAF 356 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS------CCC-HHHHHHHHHHHHHTTSEEESSS---CEEESSHHHHHHT
T ss_pred -CC--CHHHHHHHHHHhcCC------CCC-HHHHHHHHHHHHhCCCEEecCC---EEEecCHHHHHhh
Confidence 21 3344332110 1120 011 2345678999999999987642 354 688998764
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=7.7e-18 Score=142.78 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHHhhhhhHHHHHH
Q 006107 12 FLPVLFDRLASRNLLSFVRQLQVRVDSELKKWEKKLKMIQAVLCDAEEK--QLTDEAVKMWLDELQDLAYDAEDILDEFA 89 (661)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~Wl~~vr~~ayd~eD~lD~~~ 89 (661)
+++.++++|++....++....|| ++|+++|+++|++|++||.+|+.+ +..|++++.|+++||++|||+|||||+|.
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv--~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGV--KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888889999999 999999999999999999999998 56799999999999999999999999999
Q ss_pred HHH
Q 006107 90 TQA 92 (661)
Q Consensus 90 ~~~ 92 (661)
++.
T Consensus 80 ~~~ 82 (115)
T 3qfl_A 80 VQV 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.8e-13 Score=144.07 Aligned_cols=295 Identities=15% Similarity=0.020 Sum_probs=181.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccc----cCC-CCEEEEEEeCCCC-CHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVA----DSK-FDVKAWVCVSDNF-DVFNI 250 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~v~~~~-~~~~~ 250 (661)
..++||+.+++++..++.....+...+.+.|+|++|+|||+||+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 67999999999999888652122344589999999999999999998864221 001 3467888877766 88888
Q ss_pred HHHHHHHhccCCC--CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhh-hcccccCCCCcEEEEEeCChhhhcc
Q 006107 251 LKALLESITSAAS--DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDL-KAPFLAAAPNSKMIITTRHSDVAST 327 (661)
Q Consensus 251 ~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~ilvTTr~~~v~~~ 327 (661)
+..++..+..... ...........+.+.+..++.+|||||++......+... ...+.....+..+|+||+.......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 8898888843322 122345566677777776666999999976432111122 2222222267888989886532111
Q ss_pred c------CCCceeecCCCChHhHHHHHHHhhcC-CCCCCcchhhHHHHHHHHHHcC---CChHH-HHHHHHHh--c---c
Q 006107 328 M------GPIEHYNLKSLLDDDCWSIFIKHALE-GRDLSAHQISESFRKKVVGKCR---GLPLA-AKTLEGLL--R---T 391 (661)
Q Consensus 328 ~------~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~~~~I~~~~~---G~PLa-i~~~~~~l--~---~ 391 (661)
+ .....+.+.+++.++..+++...+.. -...... .+..+.|++.|+ |.|.. +..+-... . .
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1 11137999999999999999987531 1111111 234567777777 98873 33333222 1 1
Q ss_pred C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCCCCccHH
Q 006107 392 T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSRNSEQME 470 (661)
Q Consensus 392 ~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e 470 (661)
. +.+.+..++.... ...+..++..|+++.+..+..++....+-.+. ......--..| +. ....
T Consensus 257 ~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~~~ 320 (384)
T 2qby_B 257 IIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PLSY 320 (384)
T ss_dssp CCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CCCH
T ss_pred ccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CCCH
Confidence 2 6777777665421 23466778899998888887777611101111 11111111122 11 1122
Q ss_pred HHHHHHHHHHHhCCceeecc
Q 006107 471 DLGSKCFHDLVSRSIFQQTS 490 (661)
Q Consensus 471 ~~~~~~l~~L~~rsll~~~~ 490 (661)
....++++.|...|++....
T Consensus 321 ~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 44567899999999998754
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=9.9e-13 Score=138.52 Aligned_cols=296 Identities=13% Similarity=0.023 Sum_probs=181.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
..++||+.+++++..++.........+.+.|+|++|+||||||+.+++...... +.-...+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 679999999999999885532223445788999999999999999987642210 01235678888888888999999
Q ss_pred HHHHhccCCCC-CCCHHHHHHHHHhhc--CCceEEEEEeCCCCCChh--hHhhhh---cccccC--CCCcEEEEEeCChh
Q 006107 254 LLESITSAASD-LNTLNEVQVQLKKAV--DGKRFLLVLDDVRNEDYS--LWVDLK---APFLAA--APNSKMIITTRHSD 323 (661)
Q Consensus 254 il~~l~~~~~~-~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~---~~l~~~--~~gs~ilvTTr~~~ 323 (661)
++..++..... ..........+...+ .+++.+|||||++..... ..+.+. ...... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99988654332 233555566666665 356899999999875321 112222 211111 34667888887653
Q ss_pred hhccc-----CCC--ceeecCCCChHhHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHcC---CChHHH-HHHHHHhc-
Q 006107 324 VASTM-----GPI--EHYNLKSLLDDDCWSIFIKHALEG-RDLSAHQISESFRKKVVGKCR---GLPLAA-KTLEGLLR- 390 (661)
Q Consensus 324 v~~~~-----~~~--~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~~~---G~PLai-~~~~~~l~- 390 (661)
....+ ... ..+.+.+++.++..+++...+... ...... .+..+.|++.++ |.|..+ ..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21111 111 478999999999999998875310 111111 234567778887 999433 33222211
Q ss_pred ----c--C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhh-cCCCCcccChhhHHHHHH----hCC
Q 006107 391 ----T--T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCA-IFPKDYEFTEKGLIFLWM----AGG 458 (661)
Q Consensus 391 ----~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~li~~W~----aeg 458 (661)
. . +.+.+..++.... ...+.-++..||++.+..+..++ ++...-.+....+.+... ..|
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE---------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCcCHHHHHHHHHHHh---------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 1 1 6666666655421 22456678899999888777666 443222344443333321 122
Q ss_pred ccccCCCCccHHHHHHHHHHHHHhCCceeecc
Q 006107 459 IIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTS 490 (661)
Q Consensus 459 ~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~ 490 (661)
+. ......+..+++.|...|++....
T Consensus 327 -~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 327 -LE-----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp -CC-----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CC-----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 11 112355678899999999998753
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.9e-12 Score=135.09 Aligned_cols=296 Identities=13% Similarity=0.048 Sum_probs=187.8
Q ss_pred CccccchhhHHHHHHHHhcC--CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS--SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
..++||+.+++++..++... ...+..+.+.|+|++|+|||||++.+++..... .-...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK--TTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS--CCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh--cCeeEEEEeCccCCCHHHHHHHH
Confidence 57999999999999998652 111223478999999999999999998764321 01356788888888888999999
Q ss_pred HHHhccCCCC-CCCHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhHhhhhcccccC-C---CCcEEEEEeCChhhhcc
Q 006107 255 LESITSAASD-LNTLNEVQVQLKKAVD--GKRFLLVLDDVRNEDYSLWVDLKAPFLAA-A---PNSKMIITTRHSDVAST 327 (661)
Q Consensus 255 l~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~ilvTTr~~~v~~~ 327 (661)
+..++..... ......+...+...+. +++.+|||||+++.+......+...+... . .+..+|++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654322 2244555555555543 66899999999988766666665554321 1 46778888876543322
Q ss_pred cC-------CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHc---------CCChHHHHHHHHHhc-
Q 006107 328 MG-------PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKC---------RGLPLAAKTLEGLLR- 390 (661)
Q Consensus 328 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~PLai~~~~~~l~- 390 (661)
.. ....+.+.+++.++..+++...+...... .....+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 11369999999999999998875321000 012245667889998 798865554433221
Q ss_pred -----c--C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCC---CCcccChhhHHHHHHh---
Q 006107 391 -----T--T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFP---KDYEFTEKGLIFLWMA--- 456 (661)
Q Consensus 391 -----~--~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~li~~W~a--- 456 (661)
. . +.+....+...... . .+.-.+..||++.+.++..++.+. .+-.+....+...+-.
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-----~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-----G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-----C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-----h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 44444444332110 1 123446778888888888777654 2214555566554433
Q ss_pred -CCccccCCCCccHHHHHHHHHHHHHhCCceeeccC
Q 006107 457 -GGIIRQSRNSEQMEDLGSKCFHDLVSRSIFQQTSS 491 (661)
Q Consensus 457 -eg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~ 491 (661)
.|... .+ ......++++|...++|.....
T Consensus 324 ~~~~~~-----~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 324 EYGERP-----RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HTTCCC-----CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HcCCCC-----CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 12111 11 2345678999999999987543
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.4e-12 Score=137.23 Aligned_cols=296 Identities=16% Similarity=0.107 Sum_probs=175.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++||+.+++.+.+++.....+.....+.|+|++|+|||||++.+++........-...+|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999988652112334578999999999999999998864321100235678887766677788888877
Q ss_pred HhccCCC-CCCCHHHHHHHHHhhcC--CceEEEEEeCCCCCC----hhhHhhhhccccc-CCCCcEEEEEeCChhhhccc
Q 006107 257 SITSAAS-DLNTLNEVQVQLKKAVD--GKRFLLVLDDVRNED----YSLWVDLKAPFLA-AAPNSKMIITTRHSDVASTM 328 (661)
Q Consensus 257 ~l~~~~~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTTr~~~v~~~~ 328 (661)
.++.... ...........+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 7754322 12234455555555543 558999999997632 1223333332211 23456778888765432222
Q ss_pred C-----C--CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcC---CChHHHHHHHHHhc------c-
Q 006107 329 G-----P--IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCR---GLPLAAKTLEGLLR------T- 391 (661)
Q Consensus 329 ~-----~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~PLai~~~~~~l~------~- 391 (661)
. . ...+.+.+++.++..+++...+..... ......++.+.|++.++ |.|..+..+..... .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 1 1 147999999999999999876421110 01122345567777777 99985443332211 1
Q ss_pred -C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCC-C-cccChhhHHHHH--HhC--CccccC
Q 006107 392 -T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPK-D-YEFTEKGLIFLW--MAG--GIIRQS 463 (661)
Q Consensus 392 -~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~li~~W--~ae--g~i~~~ 463 (661)
. +.+.+..+..... ...+.-++..+|+..+..+..++.+-+ + -.+....+.... +++ | +.
T Consensus 258 ~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~-- 325 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE---------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VE-- 325 (386)
T ss_dssp SSCCHHHHHHHHHHHH---------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CC--
T ss_pred CccCHHHHHHHHHHHh---------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CC--
Confidence 1 5555555544321 234666788899888887777764321 1 123333332221 111 2 11
Q ss_pred CCCccHHHHHHHHHHHHHhCCceeec
Q 006107 464 RNSEQMEDLGSKCFHDLVSRSIFQQT 489 (661)
Q Consensus 464 ~~~~~~e~~~~~~l~~L~~rsll~~~ 489 (661)
.........+++.|...|++...
T Consensus 326 ---~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 ---AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp ---CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11123456789999999999764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.35 E-value=1.5e-11 Score=120.40 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=122.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||||+.+++...... .+.. ........ ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC---CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS------SCCSCSHH-HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC------CCCcccHH-HHHHhc
Confidence 469999999999999986532 234788999999999999999987643211 1100 00000000 001100
Q ss_pred Hhc-----cCCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhc-
Q 006107 257 SIT-----SAASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS- 326 (661)
Q Consensus 257 ~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~- 326 (661)
... .........+.....+... ..+++.+|||||++..+...+..+...+.....+..+|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000 0000001112222222221 235689999999998877777777777665556788888887643211
Q ss_pred -ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh
Q 006107 327 -TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL 389 (661)
Q Consensus 327 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l 389 (661)
.......+++.+++.++..+++...+...... ...+..+.|++.|+|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11234679999999999999998876432211 123556889999999999988776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.27 E-value=1.4e-10 Score=111.66 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=119.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|++..++.+.+++.... .+.+.|+|++|+|||+||+.+++...... .-...+.++.+.......+...+ .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN----IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKI-K 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC----CCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHHH-H
T ss_pred HHHcCcHHHHHHHHHHHhCCC----CCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHHH-H
Confidence 568999999999999996542 22388999999999999999987642211 11123444444433332222211 1
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhc--ccCCCcee
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS--TMGPIEHY 334 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~--~~~~~~~~ 334 (661)
.+.... ....+++.+|||||++......+..+...+.....+.++|+||+...... .......+
T Consensus 91 ~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 91 EFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 111100 01135789999999998876666666666655566788888887653211 11233578
Q ss_pred ecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 335 NLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 335 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
.+.+++.++..+++.+.+...+.. ...+..+.|++.++|+|..+..+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999998876432211 1234567889999999996555443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.24 E-value=8.5e-11 Score=120.52 Aligned_cols=266 Identities=14% Similarity=0.095 Sum_probs=149.1
Q ss_pred CccccchhhHHHHHHHHhcCC-CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS-DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.+++|++..++.+..++.... .+.....+.|+|++|+|||+||+.+++... ...++++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccccCChHH------
Confidence 569999999999888875311 011234678999999999999999987532 1223444433222222
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC------------------CCCcEEEE
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA------------------APNSKMII 317 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilv 317 (661)
+...+...+ .++.+|+|||++.........+...+... .++..+|.
T Consensus 80 ---------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 80 ---------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ---------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ---------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111121111 24568999999987655544444333221 12456777
Q ss_pred EeCChhhh-ccc-CCC-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhcc---
Q 006107 318 TTRHSDVA-STM-GPI-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLRT--- 391 (661)
Q Consensus 318 TTr~~~v~-~~~-~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~~--- 391 (661)
||...... ..+ ... ..+.+.+++.++..+++...+...... ...+....|++.++|+|..+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 66643211 111 122 478999999999999988876433211 22356688999999999888776654421
Q ss_pred -----C-CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhh-cCCCC----------cccChhhHHH--
Q 006107 392 -----T-RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCA-IFPKD----------YEFTEKGLIF-- 452 (661)
Q Consensus 392 -----~-~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~----------~~i~~~~li~-- 452 (661)
. +.+....+.... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~~--------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL--------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH--------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHh--------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 1 344444443321 1112334444444444332 22221 1133333322
Q ss_pred --HHHhCCccccCCCCccHHHHHHHHHH-HHHhCCceee
Q 006107 453 --LWMAGGIIRQSRNSEQMEDLGSKCFH-DLVSRSIFQQ 488 (661)
Q Consensus 453 --~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~rsll~~ 488 (661)
.-+..|++.....+....+.|.+||+ ++.+|+||||
T Consensus 286 ~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 23557888765556677788888887 8888888875
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=9.8e-10 Score=112.39 Aligned_cols=187 Identities=13% Similarity=0.155 Sum_probs=118.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++...-.. .....++++.+...... .+++++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~-~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN----MPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGID-VVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC----CCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHH-HHHTHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC----CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChH-HHHHHHH
Confidence 568999999999999986532 22388999999999999999987632111 11123444443332322 2222222
Q ss_pred HhccCCCCCCCHHHHHHHHHhhc-CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh-hc-ccCCCce
Q 006107 257 SITSAASDLNTLNEVQVQLKKAV-DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV-AS-TMGPIEH 333 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v-~~-~~~~~~~ 333 (661)
.+.... ..+ .+++.++|+||++......++.+...+.....++.+|+||..... .. .......
T Consensus 95 ~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 95 HFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 221000 012 356889999999987766677777666555567888888876422 11 1123357
Q ss_pred eecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHH-HHHHHH
Q 006107 334 YNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLA-AKTLEG 387 (661)
Q Consensus 334 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa-i~~~~~ 387 (661)
+++.+++.++..+++...+...+.. ...+....|++.|+|.|.. +..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999998876322111 1235568899999999954 444433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=8.6e-09 Score=105.51 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=116.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++...... .-...+.++.+..... +.+...+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS----MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGI-NVIREKVK 98 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHH-HTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC----CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCch-HHHHHHHH
Confidence 458999999999999886532 22488999999999999999987632111 0012233333321111 11111111
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhh-cc-cCCCcee
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVA-ST-MGPIEHY 334 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~-~~-~~~~~~~ 334 (661)
.+... .....+++.++|+||++......++.+...+.....++++|+||...... .. ......+
T Consensus 99 ~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 99 EFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 10000 00112567899999999887667777776666556678888888764321 11 1122468
Q ss_pred ecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHH
Q 006107 335 NLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGL 388 (661)
Q Consensus 335 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 388 (661)
.+.+++.++...++...+...+. ....+....|++.++|.|..+..+...
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999877643221 122456688999999999876555443
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.8e-08 Score=101.19 Aligned_cols=172 Identities=11% Similarity=0.054 Sum_probs=106.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC--C--CCEEEEEEeCCCCCHHHHHHHH
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS--K--FDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~--f~~~~wv~v~~~~~~~~~~~~i 254 (661)
+.||++|+++|...|...-.++....+.|+|++|+|||++++.+++....... . --..+.++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999999988866322345567899999999999999999987542110 1 1145677777778888999999
Q ss_pred HHHhccCCCC-CCCHHHHHHHHHhh--cCCceEEEEEeCCCCCChhhHhhhhcccc-cCCCCc--EEEEEeCChh-----
Q 006107 255 LESITSAASD-LNTLNEVQVQLKKA--VDGKRFLLVLDDVRNEDYSLWVDLKAPFL-AAAPNS--KMIITTRHSD----- 323 (661)
Q Consensus 255 l~~l~~~~~~-~~~~~~l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs--~ilvTTr~~~----- 323 (661)
++++.+.... ....+.+...+... -.+++++++||+++... .-+.+...+. ....++ .+|.++....
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9999654322 22333343333332 24678999999998764 1112222111 111223 3333343321
Q ss_pred hh----cccCCCceeecCCCChHhHHHHHHHhhc
Q 006107 324 VA----STMGPIEHYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 324 v~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
+. ..++ ...+.+.+++.++-.+++..++-
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 14688999999999999988763
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.81 E-value=5.6e-08 Score=101.46 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=116.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|++..++.+..++.... ....+.|+|++|+||||+|+.+.+...... .+. ...+........+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~-------~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT-------ATPCGVCDNCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC---CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC-------SSCCSSSHHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC---CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC-------CCCCcccHHHHHHhc
Confidence 459999999999999986532 234788999999999999999977543211 110 000000001111111
Q ss_pred Hh-------ccC-CCCCCCHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh-hc
Q 006107 257 SI-------TSA-ASDLNTLNEVQVQLKKA-VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV-AS 326 (661)
Q Consensus 257 ~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v-~~ 326 (661)
.. ... .........+...+... ..+++.++|+||++..+...++.+...+.....+..+|++|....- ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 000 01112233333222211 2356789999999988766777777666554556777777764321 11
Q ss_pred -ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 327 -TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 327 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
.......+++.+++.++..+++.+.+...+.. ...+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 12233678999999999999998765322111 123456789999999999876654
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.75 E-value=4.3e-07 Score=93.35 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=143.1
Q ss_pred cCccccchhhHHHHHHHHhcCC-CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 176 EHEVFGREEDKAKILDMVNTSS-DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
-.+++|++..++.+..++.... .......+.|+|++|+|||+||+.+.+... . . .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~-~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--A-N---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--C-C---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C-C---eEEecchhccc--------
Confidence 4579999999999998886521 112334678999999999999999977522 1 1 22333322111
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC------------------CCcEEE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA------------------PNSKMI 316 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 316 (661)
.......+.. ..+..+|+||+++.........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1112222222 2355789999998876555555544433211 134666
Q ss_pred EEeCChhhhc-c-cCC-CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHhc---
Q 006107 317 ITTRHSDVAS-T-MGP-IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLLR--- 390 (661)
Q Consensus 317 vTTr~~~v~~-~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l~--- 390 (661)
.+|....... . ... ...+.+.+++.++...++.+.+..... ....+..+.|++.+.|+|-.+..+...+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 6666532211 1 112 257999999999999999877633221 12245667888899999966554443321
Q ss_pred ----cC--CHHHHHHHHccccccccCCCCchHHHHHhhcCCCHHhhHHHHHhhcCCCCcccChhhHHHHHHhCCccccCC
Q 006107 391 ----TT--RHAAWDDILDSKIWDLHQQSSILPVLRLSYHHLPSHLKRCFAFCAIFPKDYEFTEKGLIFLWMAGGIIRQSR 464 (661)
Q Consensus 391 ----~~--~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~W~aeg~i~~~~ 464 (661)
.. +.+.....+.. +..+...++...+..+..++-. .+..+....+... .|.
T Consensus 235 ~~~~~~~i~~~~~~~~~~~--------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~----- 291 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS--------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSE----- 291 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH--------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTC-----
T ss_pred HhhcCCccCHHHHHHHHHH--------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCC-----
Confidence 11 33333333222 1122233444445555555544 4444444444332 121
Q ss_pred CCccHHHHHHHHHH-HHHhCCceeeccCC
Q 006107 465 NSEQMEDLGSKCFH-DLVSRSIFQQTSSG 492 (661)
Q Consensus 465 ~~~~~e~~~~~~l~-~L~~rsll~~~~~~ 492 (661)
+ .....++++ .|++.+++.....+
T Consensus 292 ---~-~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 292 ---D-ENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp ---C-HHHHHHTTHHHHHHTTSEEEETTE
T ss_pred ---C-HHHHHHHHhHHHHHcCceecCCCc
Confidence 1 133344565 78889999876654
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.74 E-value=9.5e-08 Score=97.29 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=114.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il 255 (661)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++...-. .+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~--------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARDLFGE--NWRDNFIEMNASDERG--------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT----CCCCEEEESSSSSSHHHHHHHHHHHHHTT--CHHHHCEEEETTSTTC---------
T ss_pred HHHhCCHHHHHHHHHHHhCC----CCCeEEEECcCCcCHHHHHHHHHHHhcCC--cccCCeEEEeCccccC---------
Confidence 56899999999998887543 22238899999999999999998763111 111 122233332111
Q ss_pred HHhccCCCCCCCHHHHHHHHHhh--c-CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhh-hc-ccCC
Q 006107 256 ESITSAASDLNTLNEVQVQLKKA--V-DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDV-AS-TMGP 330 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v-~~-~~~~ 330 (661)
..........+... + .+++.++|+||++.......+.+...+.....++.+|+||....- .. ....
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 11111111111111 1 256889999999987766667777766655567788888765431 11 1123
Q ss_pred CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 331 IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 331 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
...+.+.+++.++...++...+...+.. ...+....|++.++|.+..+....
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3579999999999999998776433221 123556788999999998665443
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=8.1e-07 Score=91.81 Aligned_cols=195 Identities=10% Similarity=0.075 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+.+...... ..+ ....++.+....... +.+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN----LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISI-VREKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT----CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHH-HTTHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC----CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHH-HHHHH
Confidence 568999999999999886532 12378999999999999999987642110 011 223344333223222 22222
Q ss_pred HHhccCCC-CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-hhcc-cCCCc
Q 006107 256 ESITSAAS-DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-VAST-MGPIE 332 (661)
Q Consensus 256 ~~l~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~~~-~~~~~ 332 (661)
..+..... ..... .....-.+++-+|++|+++.........+...+.......++|++|.... +... .....
T Consensus 111 ~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 22211110 00000 00111124567999999988776666666666655555677777775432 1111 11124
Q ss_pred eeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 333 HYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 333 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
.+.+.+++.++....+...+...+.. ...+..+.|++.++|.|..+..+.
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVK----CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 68899999999999998876432211 124567889999999998755443
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=1.8e-07 Score=87.28 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++||+++++++.+++... ..+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR----TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC----CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998653 23457899999999999999998764
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=2.9e-06 Score=89.97 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=103.3
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHH
Q 006107 177 HEVFGREEDK---AKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~ 252 (661)
.+++|.+..+ ..|...+.... ...+.|+|++|+||||||+.+.+.... . ++.++.. ....+ ++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~----~~~vLL~GppGtGKTtlAr~ia~~~~~---~-----f~~l~a~~~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH----LHSMILWGPPGTGKTTLAEVIARYANA---D-----VERISAVTSGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC----CCEEEEECSTTSSHHHHHHHHHHHTTC---E-----EEEEETTTCCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC----CcEEEEECCCCCcHHHHHHHHHHHhCC---C-----eEEEEeccCCHHH-HH
Confidence 5689988877 67777775532 357889999999999999999876321 1 2222211 12221 12
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEE-EeCChhh--h-ccc
Q 006107 253 ALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMII-TTRHSDV--A-STM 328 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTr~~~v--~-~~~ 328 (661)
.++.... .....+++.+|+||+++.......+.++..+.. ....+|. ||.+... . ...
T Consensus 93 ~~~~~a~----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERAR----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHHH----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHHH----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHh
Confidence 2221110 111246788999999998765555555555443 2234444 4444321 1 112
Q ss_pred CCCceeecCCCChHhHHHHHHHhhcCCCCC---CcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 329 GPIEHYNLKSLLDDDCWSIFIKHALEGRDL---SAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 329 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~---~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
.....+.+.+++.++...++.+.+...... .......+..+.|++.++|.+-.+..+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 333578899999999999998876431110 1122335567888899999987665444
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.44 E-value=5.1e-07 Score=87.12 Aligned_cols=124 Identities=7% Similarity=-0.096 Sum_probs=88.1
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+.+.+++.+..+...... ...+..+++|+.|.+.++.... +.. ....+.|+.....++.+|.. .+.+|+
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 44567888888776655432 3456788999999988764321 111 11223344334556677765 789999
Q ss_pred eecCCCCCcccccccc-cccccceeecccccccccCCcc-cccccccccccccccc
Q 006107 598 FLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTHI 651 (661)
Q Consensus 598 yL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~~ 651 (661)
+|+|++|.|+.+|..+ ++.+|++|+|++ ..+..+|.+ +..+.+|+.+++..+-
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999999999999 999999999988 578888864 6778888877776553
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.44 E-value=6.3e-07 Score=93.25 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=109.9
Q ss_pred cCccccchhhHHHH---HHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe----CCCCCHH
Q 006107 176 EHEVFGREEDKAKI---LDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV----SDNFDVF 248 (661)
Q Consensus 176 ~~~~vGR~~e~~~l---~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----~~~~~~~ 248 (661)
-.+++|++..++.+ .+.+.... ...+.+.|+|++|+|||+||+.+.+..... . ..+.++. +......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~--~~~~~vLl~GppGtGKT~la~~la~~l~~~---~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK--IAGRAVLIAGQPGTGKTAIAMGMAQALGPD---T-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC--CTTCEEEEEESTTSSHHHHHHHHHHHHCSS---C-CEEEEEGGGGSCSSSCHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC--CCCCEEEEECCCCCCHHHHHHHHHHHhccc---C-Ccccccchhhhhcccchh
Confidence 35799999887764 44444332 223578899999999999999998764311 1 1122221 2233444
Q ss_pred HHHHHHHHHhccC---------------------CC-------C--CCCHHHHHHHHHhhc-----CCc----eEEEEEe
Q 006107 249 NILKALLESITSA---------------------AS-------D--LNTLNEVQVQLKKAV-----DGK----RFLLVLD 289 (661)
Q Consensus 249 ~~~~~il~~l~~~---------------------~~-------~--~~~~~~l~~~l~~~l-----~~k----r~LlVlD 289 (661)
+.+.+.+...... .. . ......+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 4444444332110 00 0 000122222222111 133 3599999
Q ss_pred CCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-------------hh-hcccCCCceeecCCCChHhHHHHHHHhhcCC
Q 006107 290 DVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-------------DV-ASTMGPIEHYNLKSLLDDDCWSIFIKHALEG 355 (661)
Q Consensus 290 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-------------~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 355 (661)
+++.........+...+...... .++++|... .+ .........+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99988766666666655443333 344444310 00 0111222458899999999999998776432
Q ss_pred CCCCcchhhHHHHHHHHHHcC-CChHHHHHHH
Q 006107 356 RDLSAHQISESFRKKVVGKCR-GLPLAAKTLE 386 (661)
Q Consensus 356 ~~~~~~~~~~~~~~~I~~~~~-G~PLai~~~~ 386 (661)
.. ....+....|++.+. |.|-.+..+.
T Consensus 276 ~~----~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 276 DV----EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TC----CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 21 122456678888887 8887655444
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=1.4e-06 Score=87.17 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=100.5
Q ss_pred cCccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 176 EHEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
-.+++|.+..+++|.+.+.... .-.....+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHHHH
Confidence 4568999999999988774310 0122346889999999999999999876321 223333221100
Q ss_pred HHHHHHHHHHHhccCCCCCCCH-HHHHHHHHhhcCCceEEEEEeCCCCC-----------Chh---hHhhhhcccc--cC
Q 006107 247 VFNILKALLESITSAASDLNTL-NEVQVQLKKAVDGKRFLLVLDDVRNE-----------DYS---LWVDLKAPFL--AA 309 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~ 309 (661)
.. .... ......+......++.+|+|||++.. +.. ....+...+. ..
T Consensus 90 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 --------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp --------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred --------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00 0011 11122222223356789999999652 111 1112222221 12
Q ss_pred CCCcEEEEEeCChhhhcc--c---CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCC-ChHHHH
Q 006107 310 APNSKMIITTRHSDVAST--M---GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRG-LPLAAK 383 (661)
Q Consensus 310 ~~gs~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~ 383 (661)
..+..||.||........ . .....+.+.+.+.++..+++...+...... .... ...|+..+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHH
Confidence 345677777775432211 1 112468899999999999998876432211 1111 3567777877 454554
Q ss_pred HH
Q 006107 384 TL 385 (661)
Q Consensus 384 ~~ 385 (661)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.43 E-value=4.5e-07 Score=88.05 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=99.8
Q ss_pred Cccccch---hhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGRE---EDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+|+|++ ..++.+..+.... ..+.+.|+|++|+||||||+.+++.... ......|++.+.-...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD----GVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC----SCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGS------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHH------
Confidence 4577633 4455555555432 2357889999999999999999876442 2234566665431110
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhh--HhhhhcccccC-CCC-cEEEEEeCChhh-----
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSL--WVDLKAPFLAA-APN-SKMIITTRHSDV----- 324 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTTr~~~v----- 324 (661)
+. . .+ +.+ .++.+|||||++...... ...+...+... ..+ .++|+||+...-
T Consensus 95 ----~~----------~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ----ST----------A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----CG----------G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----HH----------H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00 0 00 011 345699999997754322 23333322211 122 247777764321
Q ss_pred ----hcccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHH
Q 006107 325 ----ASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 325 ----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
...+.....+.+.+++.++..+++...+...+. ....+....|++.++|.+-.+..+..
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111111257899999999999999887642221 12245667899999999877665543
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.42 E-value=3e-06 Score=86.44 Aligned_cols=180 Identities=18% Similarity=0.150 Sum_probs=106.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.+++|.+..++.+.+++... ....++.+.|++|+|||++|+.+++... ...+.++.+. .. .+.+...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~---~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~-~~-~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG---KIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSD-CK-IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT---CCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTT-CC-HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC---CCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEcccc-cC-HHHHHHHHH
Confidence 56899999999999998743 2335788899999999999999987531 2334455433 22 222222222
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-hhhHhhhhcccccCCCCcEEEEEeCChhhh-cc-cCCCce
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-YSLWVDLKAPFLAAAPNSKMIITTRHSDVA-ST-MGPIEH 333 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~-~~-~~~~~~ 333 (661)
...... ...+++.+|++||++... ....+.+...+.....+.++|+||....-. .. ......
T Consensus 95 ~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 211100 012477899999999876 555555655554434567888888764311 10 011246
Q ss_pred eecCCCChHhHHHHHH-------HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 334 YNLKSLLDDDCWSIFI-------KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 334 ~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
+++.+++.++-.+++. ..+...+ ....+ .+....|++.++|.+..+...
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 8899999887433322 2221111 11111 255678888898887654433
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=2.6e-06 Score=92.59 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=108.8
Q ss_pred cCccccchhhHHHHHHHHhcCC-------------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeC
Q 006107 176 EHEVFGREEDKAKILDMVNTSS-------------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVS 242 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~-------------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~ 242 (661)
-.+++|++..+++|.+++.... ..+..+.+.|+|++|+||||+|+.+++... + ..+.++.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s 111 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNAS 111 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCC
Confidence 3569999999999999986510 001346889999999999999999987631 2 33445555
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChh---hHhhhhcccccCCCCcEEEEEe
Q 006107 243 DNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYS---LWVDLKAPFLAAAPNSKMIITT 319 (661)
Q Consensus 243 ~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTT 319 (661)
...... ++...+........-..-...... .....+++.+|+||+++..... .+..+...+.. .+..||+++
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~ 186 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILIC 186 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEE
T ss_pred CcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEE
Confidence 444432 222222222111100000000000 0012367889999999765321 22333333322 234455555
Q ss_pred CChh---hhcccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHH
Q 006107 320 RHSD---VASTMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTL 385 (661)
Q Consensus 320 r~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 385 (661)
.... +.........+.+.+++.++..+++...+...+.... .+....|++.++|.+- ++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 4322 2222223356899999999999988876643222111 2345788899999654 44444
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=3e-06 Score=87.53 Aligned_cols=198 Identities=11% Similarity=0.083 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc-ccC--CCCE------------------
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV-ADS--KFDV------------------ 235 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--~f~~------------------ 235 (661)
.+++|.+..++.+.+++.... .... +.|+|++|+||||+++.+.....- ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 568999988888888772221 2233 889999999999999988763210 000 0000
Q ss_pred --EEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCC
Q 006107 236 --KAWVCVSDNF-DVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPN 312 (661)
Q Consensus 236 --~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 312 (661)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|||++...+....+.+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0111111100 000012222222211100 00000 000 02346779999999998776667777666554557
Q ss_pred cEEEEEeCChh-hhc-ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhh-HHHHHHHHHHcCCChHHHHHHHH
Q 006107 313 SKMIITTRHSD-VAS-TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQIS-ESFRKKVVGKCRGLPLAAKTLEG 387 (661)
Q Consensus 313 s~ilvTTr~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~-~~~~~~I~~~~~G~PLai~~~~~ 387 (661)
..+|++|.... +.. .......+++.+++.++..+.+...+...+.. .. .+....|++.++|.+..+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ----LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE----ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC----CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78888777532 211 11233678999999999999998776322211 11 24567889999999876655543
No 32
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.36 E-value=4.6e-06 Score=88.57 Aligned_cols=182 Identities=16% Similarity=0.073 Sum_probs=104.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
...+.|+|++|+||||||+.+++...... .-...++++. ..+..++...+... ... .+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEH------HHHHHHHHHHHHTT-----CHH----HHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH------HHHHHHHHHHHHcc-----cHH----HHHHHhcC
Confidence 45788999999999999999988643211 0123345543 23444444444321 111 22333333
Q ss_pred ceEEEEEeCCCCCCh--hhHhhhhccccc-CCCCcEEEEEeCChh---------hhcccCCCceeecCCCChHhHHHHHH
Q 006107 282 KRFLLVLDDVRNEDY--SLWVDLKAPFLA-AAPNSKMIITTRHSD---------VASTMGPIEHYNLKSLLDDDCWSIFI 349 (661)
Q Consensus 282 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTr~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 349 (661)
+.-+|+|||++.... ...+.+...+.. ...|..||+||.... +...+.....+.+.+++.++..+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 567999999976532 222333333321 235778888887631 11222223568899999999999998
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHHHHh------ccC--CHHHHHHHHcc
Q 006107 350 KHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLEGLL------RTT--RHAAWDDILDS 403 (661)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~l------~~~--~~~~w~~~~~~ 403 (661)
+.+...+.. .+ .++...|++.++|.+-.+.-+...+ ... +.+.+..++..
T Consensus 274 ~~~~~~~~~-i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 274 KMLEIEHGE-LP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHTCC-CC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHcCCC-CC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 876322111 11 2345788899999987554433222 122 55666665554
No 33
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.32 E-value=7.7e-06 Score=83.61 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-------------------CCCCEEEEEEeCC
Q 006107 183 EEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-------------------SKFDVKAWVCVSD 243 (661)
Q Consensus 183 ~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v~~ 243 (661)
++..+.+...+... .-.+.+.++|++|+|||++|+.+.+...-.. .+++. .++....
T Consensus 8 ~~~~~~l~~~i~~~---~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~ 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAG---RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEK 83 (334)
T ss_dssp HHHHHHHHHHHHTT---CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCT
T ss_pred HHHHHHHHHHHHcC---CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccc
Confidence 34456666666543 2345788999999999999998876532110 01221 2222210
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe
Q 006107 244 NFDVFNILKALLESITSAASDLNTLNEVQVQLKKA----VDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT 319 (661)
Q Consensus 244 ~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 319 (661)
.......++....+... ..+++-++|+|+++.......+.++..+-....++.+|++|
T Consensus 84 ------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 84 ------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp ------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 00111222222211111 13567899999999887666777777666555667777777
Q ss_pred CChh-hhcc-cCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 320 RHSD-VAST-MGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 320 r~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
.+.. +... ......+++.+++.++..+++.+.. .. ..+.+..+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~-----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM-----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC-----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 6542 2221 2333579999999999999998764 11 1244578899999999866544
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=1.2e-05 Score=79.16 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHHHhc---CC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNT---SS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~---~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.+++|.+..++.|.+++.. .. +....+.+.|+|++|+|||++|+.+++.... ..+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV------PFLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC------CEEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHHhh-
Confidence 4689999888777665432 11 0123456789999999999999999875321 1233443321110
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC------------h---hhHhhhhccccc--CCC
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED------------Y---SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~ 311 (661)
. .......+...+.......+.+|+|||++... . .....+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00001112222223333457899999998641 0 111222222221 123
Q ss_pred CcEEEEEeCChhhh-cc-cC---CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHH
Q 006107 312 NSKMIITTRHSDVA-ST-MG---PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTL 385 (661)
Q Consensus 312 gs~ilvTTr~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 385 (661)
+..+|.||...... .. .. -...+.+...+.++..+++...+..... .. ........+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Cc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 55666677654321 11 11 2256789999999999999877633221 11 112234678888888754 44444
Q ss_pred H
Q 006107 386 E 386 (661)
Q Consensus 386 ~ 386 (661)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.31 E-value=4.6e-06 Score=82.68 Aligned_cols=171 Identities=16% Similarity=0.239 Sum_probs=90.7
Q ss_pred CccccchhhHHHHHHH-------HhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHH
Q 006107 177 HEVFGREEDKAKILDM-------VNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFN 249 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~-------L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 249 (661)
..++|....++.+... +... .......+.|+|++|+|||+||+.+++.. ..... .++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~-~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~-~i~~~~~----- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS-DRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFI-KICSPDK----- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC-SSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEE-EEECGGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc-CCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEE-EEeCHHH-----
Confidence 3577887777666662 3211 13456788999999999999999998862 22222 2222211
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC----------ChhhHhhhhccccc---CCCCcEEE
Q 006107 250 ILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE----------DYSLWVDLKAPFLA---AAPNSKMI 316 (661)
Q Consensus 250 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~il 316 (661)
+.+. ............+......+..+|+|||++.. .......+...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0000 00000011222233333467889999998642 11112222222221 22334567
Q ss_pred EEeCChhhhcc---cCC-CceeecCCCCh-HhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCC
Q 006107 317 ITTRHSDVAST---MGP-IEHYNLKSLLD-DDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRG 377 (661)
Q Consensus 317 vTTr~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 377 (661)
.||........ .+. ...+.+.+++. ++...++.+.. .. ..+....|++.+.|
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~-----~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF-----KDKERTTIAQQVKG 228 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS-----CHHHHHHHHHHHTT
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC-----CHHHHHHHHHHhcC
Confidence 77776643322 122 35688888988 66666665431 11 13445778888877
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.26 E-value=3.1e-06 Score=85.66 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=90.2
Q ss_pred ccccchhhHHHHHHHHhcC-----------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 178 EVFGREEDKAKILDMVNTS-----------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
.++|.+..++.|.+++... ........+.|+|++|+|||+||+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH--
Confidence 4789888888887665421 1123344688999999999999998876643222 1111112333211
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCC---------ChhhHhhhhcccccCCCCcEEEE
Q 006107 247 VFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNE---------DYSLWVDLKAPFLAAAPNSKMII 317 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilv 317 (661)
.+..... ..........+... +.-+|+||+++.. .......+...+.....+..+|.
T Consensus 109 ----------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ----------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 0110000 01111122222222 2349999999843 44445566666655556778888
Q ss_pred EeCChhhhcc-------cC-CCceeecCCCChHhHHHHHHHhhc
Q 006107 318 TTRHSDVAST-------MG-PIEHYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 318 TTr~~~v~~~-------~~-~~~~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
||........ .. ....+.+.+++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865322110 01 115788999999999999987764
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.26 E-value=9.2e-07 Score=90.38 Aligned_cols=62 Identities=15% Similarity=0.015 Sum_probs=33.5
Q ss_pred ccCcC--CCCcceeecCCCCC-cccccccc-cccccceeecccccccccCCccccccccccccccc
Q 006107 587 AVDET--LKKCLQFLRPKYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFG 648 (661)
Q Consensus 587 ~lP~~--~L~~LryL~L~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~ 648 (661)
.+|.. .+.+|++|+|++|. ...+|..+ ++.+|++|++++|..+..+|..++++++|+.++++
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 44444 55555555555544 44455555 55555555555555555555555555555544443
No 38
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.25 E-value=1.5e-06 Score=83.32 Aligned_cols=124 Identities=7% Similarity=-0.075 Sum_probs=82.5
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CC----chhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NT----SYLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~----~~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+...+.+.+..+..........+..+++|+.|.+.++.... +. .....+.|+.....+..+|.. .|.+|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 3445667787777655443212236678889999887654311 11 011122333333455566664 889999
Q ss_pred eecCCCCCcccc-cccc-cccccceeecccccccccC-Cccccccccccccccccc
Q 006107 598 FLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.|+.+ |..+ .|.+|++|+|++ ..+..+ |..+..+++|+.++++.+
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence 999999998888 5667 999999999988 568887 667888888887777555
No 39
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.24 E-value=8.6e-07 Score=100.58 Aligned_cols=100 Identities=7% Similarity=-0.063 Sum_probs=74.4
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcc
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSER 607 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~ 607 (661)
..+.|.+..+..... ...+.++++|++|.+.++ .+..+|.. +|.+|++|+|++|.|+
T Consensus 225 ~L~~L~Ls~n~l~~l--~~~~~~l~~L~~L~Ls~N-------------------~l~~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 225 LWHALDLSNLQIFNI--SANIFKYDFLTRLYLNGN-------------------SLTELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp CCCEEECTTSCCSCC--CGGGGGCCSCSCCBCTTS-------------------CCSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred CCcEEECCCCCCCCC--ChhhcCCCCCCEEEeeCC-------------------cCcccChhhhCCCCCCEEeCcCCcCC
Confidence 455555554443321 233446667777766543 34467766 8999999999999999
Q ss_pred cccccc-cccccceeecccccccccCCcccccccccccccccccc
Q 006107 608 EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 608 ~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~ 651 (661)
.+|.++ +|.+|++|+|++| .+..+|.++++|++|+.++++.|-
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 999999 9999999999885 789999999999999988887663
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.23 E-value=2.7e-06 Score=86.91 Aligned_cols=124 Identities=8% Similarity=-0.108 Sum_probs=85.2
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCchh---hHhhHhhhh-cCCcccCcC--CCCcceeecC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTSYL---RMEAWSGVF-GNISAVDET--LKKCLQFLRP 601 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~~~---~~~~l~~~~-~~l~~lP~~--~L~~LryL~L 601 (661)
.+.+++.+..+..... +..+.++++|+.|.+.++.... +.... ..+.|+... .....+|.. .+.+|++|+|
T Consensus 183 ~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 3456666655544321 3345667777777776554321 11110 111122111 223467776 8999999999
Q ss_pred CCCC-cccccccc-cccccceeecccccccccCCccccccccccccccccccccc
Q 006107 602 KYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHIGAR 654 (661)
Q Consensus 602 ~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~~~~ 654 (661)
++|. +..+|.++ +|.+|++|+|++|..+..+|..+++|++|+..+++.+....
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9987 88899999 99999999999999999999999999999998888765443
No 41
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.23 E-value=2.9e-06 Score=81.22 Aligned_cols=123 Identities=11% Similarity=-0.028 Sum_probs=79.6
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+..++.+.+..+...... ...+..+++|+.|.+.++.... +.. ....+.|+.....+..+|.. .+.+|+
T Consensus 29 ~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 29 NLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp SCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 34567888888776654321 2356778899999887654311 111 11122333333455677765 788888
Q ss_pred eecCCCCCccccc-ccc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 598 FLRPKYTSEREKK-LSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~LP-~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.|+.+| ..+ .|.+|++|+|++ +.+..+|.+ +..+++|+.++++.|
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 8888888888774 456 888888888887 467777765 667777776666554
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.21 E-value=2.9e-06 Score=82.99 Aligned_cols=55 Identities=11% Similarity=-0.081 Sum_probs=25.8
Q ss_pred CCCcceeecCCCCCcccccccc--cccccceeecccccccccCCc-ccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDF 647 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~ 647 (661)
.+.+|++|+|++|.|+.+|..+ ++.+|++|+|++ ..+..+|. .++.+++|+.+++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEEC
Confidence 4445555555555555544442 455555555544 24444444 2444444444444
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.21 E-value=3.6e-06 Score=78.68 Aligned_cols=103 Identities=12% Similarity=-0.044 Sum_probs=76.0
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCC
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPK 602 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~ 602 (661)
..+.+++.+.+..+..... ...+..+++|+.|.+.++. +..+|.. .|.+|++|+|+
T Consensus 28 ~~~~~l~~L~L~~n~i~~i--p~~~~~l~~L~~L~Ls~N~-------------------i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 28 GIPRDVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNR-------------------ISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp CCCTTCCEEECCSSCCCSC--CGGGGGCTTCCEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCCEEECCCCcCchh--HHHhhcccCCCEEECCCCc-------------------CCEeCHhHccCCCCCCEEECC
Confidence 3456778888777665432 2567788888888877542 3334432 78899999999
Q ss_pred CCCcccccc-cc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 603 YTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 603 ~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
+|.|+.+|. .+ .|.+|++|+|++ ..+..+|.+ +..+++|+.++++.+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 999999887 46 999999999988 578999885 677888877666544
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.19 E-value=1.3e-06 Score=79.61 Aligned_cols=128 Identities=8% Similarity=-0.110 Sum_probs=80.5
Q ss_pred CCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCc---hhhHhhHhhhhcCCcc-cCcC--CCCcceeecC
Q 006107 528 FERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTS---YLRMEAWSGVFGNISA-VDET--LKKCLQFLRP 601 (661)
Q Consensus 528 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~---~~~~~~l~~~~~~l~~-lP~~--~L~~LryL~L 601 (661)
+..++++.+..+..........+..+++|+.|.+.++....... ....+.|+.....+.. +|.. .+.+|++|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45566776665544311112234566777777776553321110 1111222222233444 5555 5899999999
Q ss_pred CCCCccccc--ccc-cccccceeecccccccccCCc----cccccccccccccccccccccc
Q 006107 602 KYTSEREKK--LSV-SIQNWNMAIWCKHTYLVTGSV----NLNFTQFLQLSDFGTHIGARKS 656 (661)
Q Consensus 602 ~~t~i~~LP--~si-~L~~Lq~L~l~~c~~l~~LP~----~i~~l~~L~~~~~~~~~~~~~~ 656 (661)
++|.|+.+| ..+ ++.+|++|++++| .+..+|. .+..+++|+.+++..+-....+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999987 788 9999999999885 6888887 6788888888887666544433
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.18 E-value=5.1e-06 Score=78.62 Aligned_cols=123 Identities=8% Similarity=-0.088 Sum_probs=84.4
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+.+++++.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|+
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 34567888888776654321 2235678899999887654321 111 11223333333455677764 889999
Q ss_pred eecCCCCCccccccc-c-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 598 FLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.|+.+|.. + ++.+|++|++++ ..+..+|.. +..+++|+.++++.+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCC
Confidence 999999999998887 5 899999999988 468888876 677888887777665
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.17 E-value=2.8e-06 Score=75.42 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=70.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
+++|++..+.++.+.+....... .-|.|+|++|+|||++|+.+++.....+..| + ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~--~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCC--SCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCC--CCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc----------
Confidence 57899999999998886532111 2467999999999999999987643222122 2 554432211
Q ss_pred hccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC
Q 006107 258 ITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~ 321 (661)
.... ..+... ..-.|+||+++.........+...+.......++|.||..
T Consensus 66 --------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 1237899999988766666666666544556788888774
No 47
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.14 E-value=4.6e-06 Score=80.36 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=65.9
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC--CCCcceeecC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET--LKKCLQFLRP 601 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L 601 (661)
.+.++|.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+|
T Consensus 64 ~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEEC
Confidence 45777777666543321 2335678888888887654321 111 11223344334566788887 9999999999
Q ss_pred CCCCccccccc-c-cccccceeecccc
Q 006107 602 KYTSEREKKLS-V-SIQNWNMAIWCKH 626 (661)
Q Consensus 602 ~~t~i~~LP~s-i-~L~~Lq~L~l~~c 626 (661)
++|.|+.+|.. + .+.+|++|++++.
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999999975 5 8999999999873
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.14 E-value=0.00013 Score=74.00 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=101.8
Q ss_pred CccccchhhHHHHHHHHhc--------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNT--------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~--------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.+++|.+..++.|.+.+.. .......+.+.|+|++|+|||+||+.+++... . ...+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~---~~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N---STFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S---CEEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C---CcEEEEEhHHHH---
Confidence 5689999988888877632 01112346788999999999999999987631 1 122333333211
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-------h----hHhhhhccccc---CCCCcE
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-------S----LWVDLKAPFLA---AAPNSK 314 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~ 314 (661)
.... ..........+...-..++.+|+||+++.... . ....+...+.. ...+..
T Consensus 84 -----------~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 -----------SKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------CSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0000 11111122222222235678999999975410 0 11122222211 234455
Q ss_pred EEEEeCChhhhc-c-c-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHHHH
Q 006107 315 MIITTRHSDVAS-T-M-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTLEG 387 (661)
Q Consensus 315 ilvTTr~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~~ 387 (661)
||.||....... . . .....+.+...+.++..+++..+....... ........|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS----LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC----CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432111 0 0 222567888889999889988776322211 1123457889999987 444555543
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.13 E-value=3e-06 Score=94.76 Aligned_cols=125 Identities=8% Similarity=-0.087 Sum_probs=77.5
Q ss_pred ccccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCc
Q 006107 524 SSRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKC 595 (661)
Q Consensus 524 ~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~ 595 (661)
+..+|..+++|.+..+...... ...|.++++|++|.+.++.... +.. ....+.|+.....++.+|.. +|.+
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 4456778999998877655421 2457889999999998754311 111 11223333333455566654 6777
Q ss_pred ceeecCCCCCccccccc-c-cccccceeeccccccccc--CCccccccccccccccccc
Q 006107 596 LQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVT--GSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 596 LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~--LP~~i~~l~~L~~~~~~~~ 650 (661)
|++|+|++|.++.+|.. + +|.+|++|+++++ .+.. +|..++.|++|+.++++.+
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 77777777777777664 5 7777777777763 4543 4566666777766666544
No 50
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.12 E-value=6.7e-06 Score=75.59 Aligned_cols=103 Identities=11% Similarity=-0.043 Sum_probs=73.0
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCCC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKY 603 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~ 603 (661)
.+...+++.+..+..... ....+..+++|++|.+.++. +..+|.. .+.+|++|+|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQ-------------------IQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCc-------------------ceEeChhHccCCCccCEEECCC
Confidence 345677777766554432 12235677888888876542 3344443 788899999999
Q ss_pred CCccccccc-c-cccccceeecccccccccCCccc-cccccccccccccc
Q 006107 604 TSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 604 t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~~ 650 (661)
|.|+.+|.. + ++.+|++|++++ +.+..+|.++ ..+++|+.++++.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 998888886 4 889999999987 4788888875 67888887777655
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.11 E-value=4.2e-05 Score=78.70 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNTS--------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.+++|.+..++.|.+.+... ......+-|.|+|++|+|||+||+.+++.... ..+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~------~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC------EEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEeeHH------
Confidence 56899999999998876321 11122345789999999999999999886421 12223221
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChh-----------hHhhhhcccc---cCCCCcE
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYS-----------LWVDLKAPFL---AAAPNSK 314 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 314 (661)
++. . ... ..........+......++.+|+||+++..... ....+...+. ....+..
T Consensus 119 ~l~----~----~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DLV----S----KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HHH----S----CC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HHh----h----hhc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 1 000 011111222222222357889999999864211 1222322222 1234556
Q ss_pred EEEEeCChhhhc-c-c-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHHH
Q 006107 315 MIITTRHSDVAS-T-M-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTLE 386 (661)
Q Consensus 315 ilvTTr~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~ 386 (661)
||.||....... . . .....+.+...+.++..+++..+........ .......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~----~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL----TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776442111 0 0 2235678888999999999987764322111 123457888899884 54555544
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.11 E-value=5.4e-06 Score=82.99 Aligned_cols=129 Identities=8% Similarity=-0.084 Sum_probs=89.6
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCC---CchhhHhhHhhhhcCCcccCcC--CCCcceeec
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPN---TSYLRMEAWSGVFGNISAVDET--LKKCLQFLR 600 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~---~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~ 600 (661)
..+..++.+.+..+..... ....+..+++|+.|.+.++..... ......+.|+.....+..+|.. .+.+|++|+
T Consensus 28 ~~~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CCCTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCCCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 3456778888776654432 234577889999998876543110 1112233344334566688887 899999999
Q ss_pred CCCCCcccccc-cc-cccccceeecccccccccCCccc-cccccccccccccccccccc
Q 006107 601 PKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGTHIGARKS 656 (661)
Q Consensus 601 L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~~~~~~~~ 656 (661)
|++|.|+.+|. .+ +|.+|++|++++ ..+..+|.++ ..+++|+.++++.+--+..+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 99999999985 46 999999999998 4788998874 67888888777666443333
No 53
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.11 E-value=6e-06 Score=77.10 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=73.1
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCccc-CcC--CCCcceeecCCC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAV-DET--LKKCLQFLRPKY 603 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~l-P~~--~L~~LryL~L~~ 603 (661)
.+..++.+.+..+.......-..+..+++|++|.+.++. +..+ |.. .+.+|++|+|++
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-------------------LTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-------------------CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-------------------CCCcCHhHcCCcccCCEEECCC
Confidence 445777887776655432111126778889998887643 2233 333 788899999999
Q ss_pred CCccccccc-c-cccccceeecccccccccC-Cccccccccccccccccc
Q 006107 604 TSEREKKLS-V-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 604 t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
|.|+.+|.. + .|.+|++|+|++ ..+..+ |..+..+.+|+.++++.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 998888776 6 899999999988 467765 667888888887776554
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=4.8e-05 Score=77.39 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCC
Q 006107 187 AKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLN 266 (661)
Q Consensus 187 ~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~ 266 (661)
..+..++.... .....+.|+|++|+||||||+.+++.....+ + ..++++. .++...+...+...
T Consensus 24 ~~~~~~~~~~~--~~~~~lll~G~~GtGKT~la~~i~~~~~~~~--~-~~~~i~~------~~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 24 EVVKEALENLG--SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG--Y-RVIYSSA------DDFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHTTT--TSCSSEEEECSSSSSHHHHHHHHHHHHHHTT--C-CEEEEEH------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhCcC--CCCCeEEEECCCCCcHHHHHHHHHHHHHHCC--C-EEEEEEH------HHHHHHHHHHHHcC-----
Confidence 34444443332 2334688999999999999999988643211 1 2344543 33344444433221
Q ss_pred CHHHHHHHHHhhcCCceEEEEEeCCCCCCh--hhHhhhhccccc-CCCCcEEEEEeCChhh---------hcccCCCcee
Q 006107 267 TLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--SLWVDLKAPFLA-AAPNSKMIITTRHSDV---------ASTMGPIEHY 334 (661)
Q Consensus 267 ~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTr~~~v---------~~~~~~~~~~ 334 (661)
........ + .+..+|+|||++.... .....+...+.. ...+..+|+||..... ...+.....+
T Consensus 88 ~~~~~~~~----~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 88 TINEFRNM----Y-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp CHHHHHHH----H-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred cHHHHHHH----h-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 11222222 2 1356999999977542 222333333321 1245678888764321 1112222568
Q ss_pred ecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHH
Q 006107 335 NLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAA 382 (661)
Q Consensus 335 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 382 (661)
++.+ +.++..+++...+..... . ...+....|++.+ |.+-.+
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~-~---l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL-E---LRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC-C---CCHHHHHHHHHHC-SSHHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHhC-CCHHHH
Confidence 8999 999999999887643221 1 1234567888888 776543
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=8.4e-05 Score=74.50 Aligned_cols=185 Identities=12% Similarity=0.074 Sum_probs=99.5
Q ss_pred cCccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..++.|.+++.... -....+.+.|+|++|+|||+||+.+++... ...+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~~- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISAASLTS- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEESTTTSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeHHHHhh-
Confidence 3568999999999988763310 012235788999999999999999987532 1223344332110
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHH-HHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhccc---ccC--C
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQ-LKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPF---LAA--A 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~--~ 310 (661)
.. .......... +......++.+|+||+++.... .....+...+ ... .
T Consensus 93 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0111222222 2222235678999999965411 1111222222 111 1
Q ss_pred CCcEEEEEeCChhhhcc--c-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHH
Q 006107 311 PNSKMIITTRHSDVAST--M-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLE 386 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~~--~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 386 (661)
.+..||.||........ . .....+.+...+.++...++...+...... ...+....|++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP----LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556667765421110 0 122457777778888888877665322111 113455788889999876 554443
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=3.8e-06 Score=92.27 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred ceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCccc
Q 006107 531 VRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSERE 608 (661)
Q Consensus 531 ~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~ 608 (661)
.+.|.+..+.... ++.+..+++|++|.+.++. +..+|.. .|.+|++|+|++|.|+.
T Consensus 443 L~~L~Ls~n~l~~---lp~~~~l~~L~~L~Ls~N~-------------------l~~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 443 VRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNR-------------------LRALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp CSEEECTTSCCSS---CCCGGGGTTCCEEECCSSC-------------------CCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ceEEEecCCCCCC---CcCccccccCcEeecCccc-------------------ccccchhhhcCCCCCEEECCCCCCCC
Confidence 5667766655443 3447788889999887642 3355655 77778888888887777
Q ss_pred ccccc-cccccceeecccccccccC--Cccccccccccccccccc
Q 006107 609 KKLSV-SIQNWNMAIWCKHTYLVTG--SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 609 LP~si-~L~~Lq~L~l~~c~~l~~L--P~~i~~l~~L~~~~~~~~ 650 (661)
+| ++ +|.+|++|+|++ +.+..+ |..++.|++|+.++++.|
T Consensus 501 lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred Cc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 77 77 888888888876 467777 777777777777776555
No 57
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=3e-05 Score=79.45 Aligned_cols=182 Identities=12% Similarity=0.156 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFD-VKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il 255 (661)
..++|.+..++.|..++.... .+.+.++|++|+||||+|+.+++...-. .+. ...-++.+.......+ ++.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~----~~~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~i-r~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK----LPHLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVV-RNQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC----CCCEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC----CceEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHH-HHHH
Confidence 457898888888888886532 2238899999999999999998753211 111 1122222222122111 1111
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh-hhc-ccCCCce
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD-VAS-TMGPIEH 333 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~-v~~-~~~~~~~ 333 (661)
..+.... ....+.+-++|+|+++.......+.+...+......+.+|++|.... +.. .......
T Consensus 98 ~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 98 KDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 1111000 00123467899999988766666666665554445667777765432 111 1122346
Q ss_pred eecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHH
Q 006107 334 YNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAK 383 (661)
Q Consensus 334 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 383 (661)
+.+.+++.++..+.+...+..... . ...+..+.|++.++|.+--+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 889999999998888776532221 1 123456788899999887443
No 58
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.09 E-value=7.2e-05 Score=75.96 Aligned_cols=185 Identities=12% Similarity=0.058 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhc--------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNT--------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~--------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.+++|.+..++.|.+.+.. .......+-+.|+|++|+|||+||+.+++... . ..+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~----~~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--S----TFFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--C----EEEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--C----CEEEEchH------
Confidence 5689999999999887721 11122345788999999999999999987632 1 12223221
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHH-HHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhcccc---cCCCCc
Q 006107 249 NILKALLESITSAASDLNTLNEVQV-QLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFL---AAAPNS 313 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 313 (661)
++ .... ....+.... .+...-..++.+|+||+++.... .....+...+. ....+.
T Consensus 86 ~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1100 011112222 22222235678999999975321 11223333222 233455
Q ss_pred EEEEEeCChhhhcc-c--CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHHHH
Q 006107 314 KMIITTRHSDVAST-M--GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTLEG 387 (661)
Q Consensus 314 ~ilvTTr~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~~ 387 (661)
.||.||........ + .-...+.+...+.++-.+++..++....... .......|++.+.|. +-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL----TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC----CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667765322110 0 1224677888999999999988764322111 123457888888884 545554443
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.09 E-value=3.3e-06 Score=75.17 Aligned_cols=117 Identities=9% Similarity=-0.030 Sum_probs=52.6
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCc---hhhHhhHhhhhcCCcc-cCcC--CCCcceeecCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTS---YLRMEAWSGVFGNISA-VDET--LKKCLQFLRPK 602 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~---~~~~~~l~~~~~~l~~-lP~~--~L~~LryL~L~ 602 (661)
.+.+++.+..+..........+..+++|+.|.+.++....... ....+.|+.....+.. +|.. .+.+|++|+|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 4567777666554311112345677888888776643211100 0001111111112222 3333 35555555555
Q ss_pred CCCccccc--ccc-cccccceeecccccccccCCc----cccccccccccc
Q 006107 603 YTSEREKK--LSV-SIQNWNMAIWCKHTYLVTGSV----NLNFTQFLQLSD 646 (661)
Q Consensus 603 ~t~i~~LP--~si-~L~~Lq~L~l~~c~~l~~LP~----~i~~l~~L~~~~ 646 (661)
+|.++.+| ..+ .+.+|++|++++| .+..+|. .+..+.+|+.++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 55555543 445 5555555555553 3455443 344444444443
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=3.1e-06 Score=78.33 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~----~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR----TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS----SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC----CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998653 23456899999999999999998764
No 61
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.08 E-value=6.6e-05 Score=77.37 Aligned_cols=185 Identities=12% Similarity=0.045 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHhcC----C----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHH
Q 006107 177 HEVFGREEDKAKILDMVNTS----S----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVF 248 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~----~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 248 (661)
.+++|.+..++.|.+.+... . .....+.+.|+|++|+|||+||+.+++... ...+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG------ATFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT------CEEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC------CeEEEEehHHhhc--
Confidence 56899999999998877420 0 012345788999999999999999987532 1234444432111
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHH-HHhhcCCceEEEEEeCCCCCC-----------hhhHhhhhccccc----CCCC
Q 006107 249 NILKALLESITSAASDLNTLNEVQVQ-LKKAVDGKRFLLVLDDVRNED-----------YSLWVDLKAPFLA----AAPN 312 (661)
Q Consensus 249 ~~~~~il~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~g 312 (661)
.. .......... +...-..++.+|+||+++... ......+...+.. ...+
T Consensus 156 ------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0011111111 122223567899999995321 0112233333221 1234
Q ss_pred cEEEEEeCChhhh-cc-c-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCC-ChHHHHHHHH
Q 006107 313 SKMIITTRHSDVA-ST-M-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRG-LPLAAKTLEG 387 (661)
Q Consensus 313 s~ilvTTr~~~v~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~ 387 (661)
..||.||...... .. . .....+.+...+.++..+++...+...... ...+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC----LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC----ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566566543211 11 1 122467888889999888887766332211 113456788899998 4556665544
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.07 E-value=8.7e-06 Score=80.52 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=38.4
Q ss_pred CCCcceeecCCCCCccccccc-c-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.|+.+|.. + ++.+|++|+++++ .+..+|.. +..+++|+.++++.+
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC
Confidence 667777777777777777665 4 6777777777663 56666654 566666666666544
No 63
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.06 E-value=9.5e-06 Score=74.85 Aligned_cols=121 Identities=20% Similarity=0.167 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC
Q 006107 182 REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA 261 (661)
Q Consensus 182 R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 261 (661)
....++.+.+++..-. ......+.|+|++|+|||||++.+++...... .+ .++++ +..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~------~~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFF------DTKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHSCC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEE------EHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEE------EHHHHHHHHHHHhcCc
Confidence 3344444554443321 12235789999999999999999988753222 12 22333 3445555554444322
Q ss_pred CCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHh--hhhccccc-CCCCcEEEEEeCC
Q 006107 262 ASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWV--DLKAPFLA-AAPNSKMIITTRH 321 (661)
Q Consensus 262 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~ilvTTr~ 321 (661)
... .....+. +.-+|||||++......|. .+...+.. ...|..+|+||..
T Consensus 90 ~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 2222222 3468999999843222232 23222222 1257788888873
No 64
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.05 E-value=3.9e-06 Score=95.21 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=68.0
Q ss_pred ccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcccccccc-cccccceeecc
Q 006107 548 EVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWC 624 (661)
Q Consensus 548 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~ 624 (661)
..+..+++|++|.+.++ .+..+|.. +|.+|++|+|++|.|+.+|.+| +|.+|++|+|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n-------------------~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL-------------------QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ----CCCCCCEEECTTS-------------------CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT
T ss_pred hhhccCCCCcEEECCCC-------------------CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc
Confidence 34567788888887654 33456665 8999999999999999999999 99999999999
Q ss_pred cccccccCCccccccccccccccccc
Q 006107 625 KHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 625 ~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+| .|..||.++++|.+|+.++++.+
T Consensus 279 ~N-~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 279 HN-RLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp TS-CCSSCCSSGGGGTTCSEEECCSS
T ss_pred CC-cCCccChhhcCCCCCCEEECCCC
Confidence 84 69999999999999998888666
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.05 E-value=4.9e-06 Score=78.02 Aligned_cols=116 Identities=3% Similarity=-0.114 Sum_probs=59.9
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcc-cCcC--CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISA-VDET--LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~-lP~~--~L~~LryL~ 600 (661)
.+.+++.+..+... .++.+..+++|++|.+.++.... +.. ....+.|+.....+.. .|.. .+.+|++|+
T Consensus 66 ~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 35566666555322 24456667777777776543211 110 0011112211122221 2322 666667777
Q ss_pred CCCCC-cccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 601 PKYTS-EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~-i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|++|. ++.+| .+ .+.+|++|++++| .+..+| .+..+++|+.+++..+
T Consensus 143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred ccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence 77665 66666 56 6667777777664 466665 5666666666655443
No 66
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.04 E-value=5.1e-06 Score=76.34 Aligned_cols=66 Identities=14% Similarity=0.024 Sum_probs=52.4
Q ss_pred CCcccCcC---CCCcceeecCCCCCcccccc--cc-cccccceeecccccccccCCcc----ccccccccccccccc
Q 006107 584 NISAVDET---LKKCLQFLRPKYTSEREKKL--SV-SIQNWNMAIWCKHTYLVTGSVN----LNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~---~L~~LryL~L~~t~i~~LP~--si-~L~~Lq~L~l~~c~~l~~LP~~----i~~l~~L~~~~~~~~ 650 (661)
.+..+|.. .+.+|++|+|++|.|..+|. .+ .+.+|++|++++| .+..+|.. +..+.+|+.+|+..+
T Consensus 75 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44456654 78889999999999999988 78 8999999999884 68888875 778888887777554
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.00 E-value=1.1e-05 Score=76.99 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=63.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+.+.+..+..... ....+..+++|+.|.+.++.... +.. ....+.|+.....+..++.. .+.+|++|+
T Consensus 56 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 56 KKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 4567777766554432 13456778888888887654321 111 11222333323455566443 889999999
Q ss_pred CCCCCccccccc-c-cccccceeeccc
Q 006107 601 PKYTSEREKKLS-V-SIQNWNMAIWCK 625 (661)
Q Consensus 601 L~~t~i~~LP~s-i-~L~~Lq~L~l~~ 625 (661)
|++|.|+.+|.. + .+.+|++|++++
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 999999999886 6 899999999987
No 68
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.8e-05 Score=77.96 Aligned_cols=149 Identities=9% Similarity=0.064 Sum_probs=94.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccc-cCCCCEEEEEEeCC-CCCHHHHHHHHHHHh
Q 006107 181 GREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVA-DSKFDVKAWVCVSD-NFDVFNILKALLESI 258 (661)
Q Consensus 181 GR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~v~~-~~~~~~~~~~il~~l 258 (661)
|-++.++.|.+.+... . .+.+.++|++|+||||+|+.+.+..... ..+.+. .+++.+. ...+.. .+++.+.+
T Consensus 1 g~~~~~~~L~~~i~~~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTC---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHH
Confidence 3455566777777543 2 5688899999999999999997642111 113333 4454332 223222 23344333
Q ss_pred ccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh-hhhcccCCCceeecC
Q 006107 259 TSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS-DVASTMGPIEHYNLK 337 (661)
Q Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~-~v~~~~~~~~~~~l~ 337 (661)
...+ ..+++-++|+|+++.......+.++..+-...+.+.+|++|.+. .+...+... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2211 12456789999999888777888887776656677777776543 333333334 89999
Q ss_pred CCChHhHHHHHHHhh
Q 006107 338 SLLDDDCWSIFIKHA 352 (661)
Q Consensus 338 ~L~~~e~~~Lf~~~~ 352 (661)
++++++..+.+.+..
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998775
No 69
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.99 E-value=7.6e-06 Score=75.06 Aligned_cols=58 Identities=10% Similarity=-0.119 Sum_probs=45.0
Q ss_pred CCCcceeecCCCCCcccccccc--cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
+|.+|++|+|++|.|+.+|..+ +|.+|++|+|++ ..+..+|.+ +..+++|+.+++..|
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence 7788888888888888888764 788888888877 578888876 677777777666555
No 70
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=0.0002 Score=71.88 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.+++|.+..+++|.+++... ..-...+.+.|+|++|+|||+||+.+++... ...+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEE------h
Confidence 46899999888888876431 0012335788999999999999999987532 1222222 2
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 311 (661)
.++... ..+.. . ......+.......+.+|+||+++.... .....+...+.. ...
T Consensus 83 ~~l~~~----~~g~~--~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTM----WFGES--E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHH----HHTTC--T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhh----hcCch--H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 233222 21111 1 1122233333345678999999974210 112333333321 233
Q ss_pred CcEEEEEeCChhhhc-c-cC---CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHH
Q 006107 312 NSKMIITTRHSDVAS-T-MG---PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLA 381 (661)
Q Consensus 312 gs~ilvTTr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 381 (661)
+..||.||....... . .. -...+.+...+.++-.+++......... ..... ...++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 556777776543221 1 12 2256889999999988888776533221 11111 24566678887754
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.97 E-value=1.2e-05 Score=79.58 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=83.5
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+++.+..+.... ++.+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+
T Consensus 63 ~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 567888877665443 4567788999999988764321 111 11223344334556677764 889999999
Q ss_pred CCCCCcccccccc--cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 601 PKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
|++|.++.+|..+ ++.+|++|++++| .+..+|.. ++.+++|+.++++.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 9999999988764 8999999999985 68888876 477888887777655
No 72
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.97 E-value=9.5e-06 Score=74.51 Aligned_cols=99 Identities=13% Similarity=-0.071 Sum_probs=72.5
Q ss_pred CcceEEEeeeCCCccccccccccCCC-CceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC-CCCcceeecCCCCCc
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIE-LLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTSE 606 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~-~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~i 606 (661)
.+.+.+.+..+.... ++.+..+. +|+.|.+.++. +..++.. .+.+|++|+|++|.|
T Consensus 19 ~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N~-------------------l~~~~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDNE-------------------IRKLDGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp TSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSSC-------------------CCEECCCCCCSSCCEEECCSSCC
T ss_pred CCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCCC-------------------CCcccccccCCCCCEEECCCCcc
Confidence 456667666554432 23344444 77877776542 2334333 889999999999999
Q ss_pred ccccccc--cccccceeecccccccccCCc--cccccccccccccccc
Q 006107 607 REKKLSV--SIQNWNMAIWCKHTYLVTGSV--NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 607 ~~LP~si--~L~~Lq~L~l~~c~~l~~LP~--~i~~l~~L~~~~~~~~ 650 (661)
+.+|+.+ .+.+|++|++++ +.+..+|. .+..+++|+.++++.+
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred cccCcchhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC
Confidence 9999765 899999999998 47899998 7888888887777655
No 73
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.97 E-value=0.00012 Score=76.56 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=99.8
Q ss_pred cCccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..++.|..++.... .....+-+.|+|++|+|||+||+.+++... ...+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeHHHhhcc
Confidence 4579999999999988873210 012235788999999999999999987522 12233433321110
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hhhHhhhhccccc----CCCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----------YSLWVDLKAPFLA----AAPN 312 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~g 312 (661)
.. ..........+...-...+.+|+||+++... ......+...+.. ....
T Consensus 188 --~~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 --YV-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred --cc-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 0011111112222223456799999996431 1111222222211 1233
Q ss_pred cEEEEEeCChhhhc--ccCCC-ceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH-HHHHHH
Q 006107 313 SKMIITTRHSDVAS--TMGPI-EHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL-AAKTLE 386 (661)
Q Consensus 313 s~ilvTTr~~~v~~--~~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 386 (661)
..||.||....... ..... ..+.+...+.++..+++...+...... ...+....|++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666665432111 11122 458888999999999998776332211 123456788899988654 555543
No 74
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00017 Score=76.47 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=101.2
Q ss_pred cCccccchhhHHHHHHHHhcC--------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVNTS--------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..++.|.+.+... ......+.+.|+|++|+|||+||+.+++... . .. ++.++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~---~~--~~~v~~~--- 202 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N---ST--FFSISSS--- 202 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--S---SE--EEEECCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--C---CC--EEEEeHH---
Confidence 356899999999988876320 0012345788999999999999999987631 1 11 2333322
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhccccc---CCCCc
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLA---AAPNS 313 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs 313 (661)
++.. ...+. .......+... .-..++.+|+||+++.... .....+...+.. ...+.
T Consensus 203 -~l~~----~~~g~--~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 203 -DLVS----KWLGE--SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HHHh----hhcch--HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1111 11010 11222222222 2235678999999986411 112223333322 23456
Q ss_pred EEEEEeCChhhhcc--c-CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHHH
Q 006107 314 KMIITTRHSDVAST--M-GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTLE 386 (661)
Q Consensus 314 ~ilvTTr~~~v~~~--~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~ 386 (661)
.||.||........ . .....+.+...+.++...+|..++...... ........|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~----l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS----LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE----CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67767765422110 1 122467788888888888888776322111 1123457888899885 44555444
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.97 E-value=1.1e-05 Score=80.58 Aligned_cols=119 Identities=8% Similarity=-0.064 Sum_probs=66.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
...+.+.+..+..... ...+..+++|+.|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+
T Consensus 77 ~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCcC--chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 3455566555443321 2234566777777766543311 111 11122233223345556654 677777777
Q ss_pred CCCCCcccccccc--cccccceeecccccccccCCccccccccccccccccc
Q 006107 601 PKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|++|.|+.+|..+ +|.+|++|+|++ ..+..+|.++..+.+|+.+++..+
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 7777777777665 577777777776 467777777766666665555433
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.96 E-value=1.5e-05 Score=78.89 Aligned_cols=120 Identities=9% Similarity=-0.016 Sum_probs=84.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+.+.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+
T Consensus 85 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 46777877666544321 2336788999999998765421 111 11223344333456677764 899999999
Q ss_pred CCCCCcccccccc--cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 601 PKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
|++|.++.+|..+ .+.+|++|++++| .+..+|.. +..+++|+.++++.+
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 9999999988875 8999999999985 68888876 578888888777655
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.95 E-value=1.1e-05 Score=78.73 Aligned_cols=119 Identities=10% Similarity=-0.039 Sum_probs=76.4
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeecC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLRP 601 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L 601 (661)
+.+++.+..+..... ....+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+|
T Consensus 60 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 60 KLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 455555544433321 12234566677777666543211 111 11122233223455577765 7999999999
Q ss_pred CCCCcccccc-cc-cccccceeecccccccccCCc-cccccccccccccccc
Q 006107 602 KYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 602 ~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~~ 650 (661)
++|.|+.+|. .+ ++.+|++|+|++ ..+..+|. .+..+++|+.+++..+
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999999998 57 999999999998 57888887 4677888887776555
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.95 E-value=1.3e-05 Score=92.68 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=81.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC--C--CCEEEEEEeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS--K--FDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~--f~~~~wv~v~~~~~~~~~~~ 252 (661)
.+++||+.+++++++.|.... ...+.|+|++|+|||+||+.+++....... . -...++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~----~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT----KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS----CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cccCCcHHHHHHHHHHHhcCC----CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 468999999999999986532 224679999999999999999876421000 0 11334444322100
Q ss_pred HHHHHhccCCCCCCCHHHH-HHHHHhhcC-CceEEEEEeCCCCCCh--------hhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 253 ALLESITSAASDLNTLNEV-QVQLKKAVD-GKRFLLVLDDVRNEDY--------SLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l-~~~l~~~l~-~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
+ .......+.. ...+...-. +++.+|+||+++.... ...+.+...+ . ..+..+|.+|...
T Consensus 240 -------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~ 309 (854)
T 1qvr_A 240 -------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLD 309 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHH
T ss_pred -------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCch
Confidence 0 0001122222 222222222 4679999999987531 1111122222 2 2344566665544
Q ss_pred hhh-----c-ccCCCceeecCCCChHhHHHHHHHh
Q 006107 323 DVA-----S-TMGPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 323 ~v~-----~-~~~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
... . .......+.+.+++.++..+++...
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 321 1 1122356889999999999988654
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.94 E-value=1.2e-05 Score=89.59 Aligned_cols=124 Identities=7% Similarity=-0.087 Sum_probs=85.7
Q ss_pred cccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCccc-CcC--CCCcc
Q 006107 525 SRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAV-DET--LKKCL 596 (661)
Q Consensus 525 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~l-P~~--~L~~L 596 (661)
...+..++++.+..+...... ...+.++++|++|.+.++.... +.. ....+.|+.....+..+ |.. +|.+|
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 345577888888776654321 2357788999999887654311 111 11233344333455566 555 89999
Q ss_pred eeecCCCCCccccc-ccc-cccccceeecccccccc--cCCccccccccccccccccc
Q 006107 597 QFLRPKYTSEREKK-LSV-SIQNWNMAIWCKHTYLV--TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 597 ryL~L~~t~i~~LP-~si-~L~~Lq~L~l~~c~~l~--~LP~~i~~l~~L~~~~~~~~ 650 (661)
++|+|++|.+..+| ..+ +|.+|++|++++| .+. .+|..++++++|+.++++.+
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 99999999988887 677 9999999999885 565 57888998888888777655
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.94 E-value=1.2e-05 Score=88.61 Aligned_cols=123 Identities=8% Similarity=-0.083 Sum_probs=81.6
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-C-Cc---hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-N-TS---YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~-~~---~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+..++++.+..+...... ...+..+++|++|.+.++.... + .. ....+.|+.....+..+|.. .+.+|+
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SSCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 45567888888776554321 2357788899999887764311 1 11 11223333333445566643 888888
Q ss_pred eecCCCCCcccccc-cc-cccccceeeccccccccc--CCccccccccccccccccc
Q 006107 598 FLRPKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVT--GSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~--LP~~i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.++.+|. .+ +|.+|++|++++| .+.. +|..++++++|+.++++.+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC
Confidence 88888888888887 57 8888888888874 4554 6888888888887777544
No 81
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.93 E-value=1e-05 Score=83.81 Aligned_cols=124 Identities=11% Similarity=-0.036 Sum_probs=82.6
Q ss_pred ccCCcceEEEeeeCCCcccccccccc-CCCCceEEeeccccCCC-CC----chhhHhhHhhhhcCCcccCcC---CCCcc
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFY-EIELLRTFLPFCIRGGP-NT----SYLRMEAWSGVFGNISAVDET---LKKCL 596 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~-~~----~~~~~~~l~~~~~~l~~lP~~---~L~~L 596 (661)
..+...+.|.+..+...... ...+. .+++|++|.+.++.... +. .....+.|+.....+..+|.. .|.+|
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SCCTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 44566778887776554321 22344 78889999887654311 10 111223333334456677764 88999
Q ss_pred eeecCCCCCcccc-cccc-cccccceeecccccccccCCccc----ccccccccccccccc
Q 006107 597 QFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSVNL----NFTQFLQLSDFGTHI 651 (661)
Q Consensus 597 ryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~~i----~~l~~L~~~~~~~~~ 651 (661)
++|+|++|.|..+ |..+ +|.+|++|+|++ +.+..+|..+ ..+.+|+.++++.+-
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 9999999998887 5567 999999999988 5799999876 568888877776653
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.93 E-value=1.8e-05 Score=78.25 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=73.6
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+.+.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+
T Consensus 85 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 34566666554433211 1234566777777776543211 111 11122233323445566664 788899999
Q ss_pred CCCCCccccccc-c-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 601 PKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
|++|.++.+|.. + ++.+|++|+++++ .+..+|.+ +..+.+|+.++++.+
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 998888888875 5 8889999999874 68888875 567777776666554
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.93 E-value=8.1e-06 Score=72.16 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=63.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
-.++|++..++++.+.+....... .-|.|+|++|+|||++|+.+.+... -|+.+....-.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~--~~vll~G~~GtGKt~lA~~i~~~~~---------~~~~~~~~~~~~~~~----- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRT--SPVFLTGEAGSPFETVARYFHKNGT---------PWVSPARVEYLIDMP----- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCS--SCEEEEEETTCCHHHHHGGGCCTTS---------CEECCSSTTHHHHCH-----
T ss_pred cCceeCCHHHHHHHHHHHHHhCCC--CcEEEECCCCccHHHHHHHHHHhCC---------CeEEechhhCChHhh-----
Confidence 357899999998888876422111 2477999999999999999876421 223332211111110
Q ss_pred HhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-CCCcEEEEEeCC
Q 006107 257 SITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-APNSKMIITTRH 321 (661)
Q Consensus 257 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTr~ 321 (661)
...+ ... +.-.|+||+++.........+...+... ..+.++|.||..
T Consensus 68 ---------------~~~~-~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ---------------MELL-QKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHH-HHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhHH-HhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111 111 1237899999988766555565554432 345778887763
No 84
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.92 E-value=1.6e-05 Score=72.49 Aligned_cols=56 Identities=9% Similarity=-0.140 Sum_probs=25.9
Q ss_pred CCCcceeecCCCCCcccccccc--cccccceeecccccccccCCcc-ccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFG 648 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~ 648 (661)
.|.+|++|+|++|.|+.+|..+ +|.+|++|+|++ +.+..+|.+ +..+++|+.+++.
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeC
Confidence 4444555555554444444432 445555555544 344444443 3444444444443
No 85
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.92 E-value=0.00029 Score=71.83 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHHHhcC-CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS-SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALL 255 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 255 (661)
..++|.+..++.+...+... ..+..+..+.|+|++|+||||||+.+++.... .|. ..+..-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT---NIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEE---EEechHhcCH--------
Confidence 56889887777776666432 01123357899999999999999999876321 111 1111100111
Q ss_pred HHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC------------------CCcEEE-
Q 006107 256 ESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA------------------PNSKMI- 316 (661)
Q Consensus 256 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il- 316 (661)
.++...+ ..+ .++.++++|+++.......+.+...+.... +...++
T Consensus 91 -------------~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111111 112 233477889887665333333322211110 012222
Q ss_pred EEeCChhhhccc--CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHHH
Q 006107 317 ITTRHSDVASTM--GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTLE 386 (661)
Q Consensus 317 vTTr~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 386 (661)
.|++...+.... ...-...+++.+.++..+++.+.+..... ....+.+..|++.+.|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 233332221111 11134789999999999999887632211 1224567899999999997655443
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=2.2e-05 Score=74.18 Aligned_cols=98 Identities=8% Similarity=-0.012 Sum_probs=64.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+++.+..+..... ....+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 4567777766554432 12235677888888887654321 111 11222333333456677764 899999999
Q ss_pred CCCCCccccccc-c-cccccceeeccccc
Q 006107 601 PKYTSEREKKLS-V-SIQNWNMAIWCKHT 627 (661)
Q Consensus 601 L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~ 627 (661)
|++|.++.+|.. + ++.+|++|+++++.
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCC
Confidence 999999999987 5 89999999999853
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.92 E-value=7.3e-06 Score=72.93 Aligned_cols=33 Identities=6% Similarity=-0.217 Sum_probs=18.2
Q ss_pred CCCcceeecCCCCCcccccc----cc-cccccceeecc
Q 006107 592 LKKCLQFLRPKYTSEREKKL----SV-SIQNWNMAIWC 624 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~----si-~L~~Lq~L~l~ 624 (661)
.+.+|++|++++|.++.+|. .+ .+.+|++|+++
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555555555555554 34 55555555553
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.91 E-value=1.3e-05 Score=85.73 Aligned_cols=121 Identities=7% Similarity=-0.130 Sum_probs=69.8
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-C-Cc---hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-N-TS---YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~-~~---~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+.+++.+.+..+...... ...+.++++|+.|.+.++.... + .. ....+.|+.....+..+|.. .|.+|+
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 34567778877766544321 3456677888888877653211 0 00 11222233223445566654 677777
Q ss_pred eecCCCCCccccccc-c-cccccceeecccccccccCCcc-cccccccccccc
Q 006107 598 FLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDF 647 (661)
Q Consensus 598 yL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~ 647 (661)
+|+|++|.|+.+|.. + ++.+|++|++++|..+..+|.+ +..+.+|+.+++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 777777777777763 4 6777777777766666666653 445555554444
No 89
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.87 E-value=7.7e-05 Score=79.85 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=100.5
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.+++|.+..+++|.+++... ......+-+.|+|++|+|||+||+.+.+... ...+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS------SEEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC------CCEEEEEch-----
Confidence 45899999999998877532 0012334688999999999999999987531 122334321
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hhhHhhhhccccc--CCCCcE
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNED-----------YSLWVDLKAPFLA--AAPNSK 314 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~ 314 (661)
++ ...+. ..........+.....+++.+|+||+++... ......++..+.. ...+..
T Consensus 273 -~l----~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -EI----MSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -HH----HTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -Hh----hhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11 10000 0111122233334445678899999994211 0112233333322 223456
Q ss_pred EEEEeCChhh-hccc----CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCC-hHHHHHH
Q 006107 315 MIITTRHSDV-ASTM----GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGL-PLAAKTL 385 (661)
Q Consensus 315 ilvTTr~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~ 385 (661)
||.||..... ...+ .....+.+...+.++-.+++..++..... ..... ..++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 6667765422 1111 22246889999999999999877532211 11112 25677777775 4445444
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.87 E-value=2.1e-05 Score=77.93 Aligned_cols=120 Identities=9% Similarity=-0.088 Sum_probs=54.0
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CC----chhhHhhHhhhhcCCcccCcC---CCCccee
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NT----SYLRMEAWSGVFGNISAVDET---LKKCLQF 598 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~----~~~~~~~l~~~~~~l~~lP~~---~L~~Lry 598 (661)
.+..++++.+..+...... ...+.++++|++|.+.++.... +. .....+.|+.....+..+|.. ++.+|++
T Consensus 26 l~~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SCTTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 3445666666554433211 1245556666666665542210 00 001112222222233333322 5555555
Q ss_pred ecCCCCCcccccc-cc-cccccceeeccccccccc--CCccccccccccccccc
Q 006107 599 LRPKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVT--GSVNLNFTQFLQLSDFG 648 (661)
Q Consensus 599 L~L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~--LP~~i~~l~~L~~~~~~ 648 (661)
|++++|.+..+|. .+ ++.+|++|+++++ .+.. +|..+..+++|+.++++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECC
Confidence 5555555555544 34 5555555555542 3443 45555555555544443
No 91
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.86 E-value=4e-05 Score=82.00 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc--CCC-C-EEEEEEeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD--SKF-D-VKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~v~~~~~~~~~~~ 252 (661)
.+++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++...... ... + ..+.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~----~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC----CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 468999999999999986532 22457999999999999999987632100 000 1 11222222
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhc---c--
Q 006107 253 ALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS---T-- 327 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~---~-- 327 (661)
....+ ........+.. ..-..++.+|++|. .. ...+.+...+.. ...++|.+|....... .
T Consensus 246 ---~~~~g--~~e~~~~~~~~---~~~~~~~~iLfiD~--~~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 246 ---TKYRG--EFEDRLKKVMD---EIRQAGNIILFIDA--AI--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp ------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred ---ccccc--hHHHHHHHHHH---HHHhcCCeEEEEeC--ch--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCH
Confidence 00000 00112222222 22235678999991 11 222333333322 2456666665543211 1
Q ss_pred --cCCCceeecCCCChHhHHHHHHHhh
Q 006107 328 --MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 328 --~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
......+.+.+.+.++..+++....
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1122468999999999999998754
No 92
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.86 E-value=2.1e-05 Score=72.03 Aligned_cols=93 Identities=6% Similarity=-0.044 Sum_probs=69.8
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCCC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKY 603 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~ 603 (661)
.+...+.|.+..+...... ...+..+++|+.|.+.++ .++.+|.. +|.+|++|+|++
T Consensus 31 ~~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-------------------~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSN-------------------KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-------------------CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCC-------------------CCCccChhHhCCcchhhEEECCC
Confidence 4456777777766544321 234667888888887654 34456654 789999999999
Q ss_pred CCccccccc-c-cccccceeecccccccccCCccccccc
Q 006107 604 TSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVNLNFTQ 640 (661)
Q Consensus 604 t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~i~~l~ 640 (661)
|.|+.+|.. + +|.+|++|+|++ ..+...|.++..|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYN-NPWDCECRDIMYLR 128 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCS-SCBCTTBGGGHHHH
T ss_pred CccceeCHHHhccccCCCEEEeCC-CCcccccccHHHHH
Confidence 999999997 7 999999999998 57888887766554
No 93
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.86 E-value=2.2e-05 Score=80.88 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=81.2
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+...+++.+..+...... ...+.++++|++|.+.++.... +.. ....+.|+.....+..+|.. ++.+|+
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 34457888888766544321 2347788999999887654311 110 11223333333455566664 788888
Q ss_pred eecCCCCCcccccc--cc-cccccceeecccccccccCC-ccccccccccccccccc
Q 006107 598 FLRPKYTSEREKKL--SV-SIQNWNMAIWCKHTYLVTGS-VNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~LP~--si-~L~~Lq~L~l~~c~~l~~LP-~~i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.++.+|. .+ ++.+|++|++++|..+..+| ..+..+++|+.++++.+
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 88888888888887 66 88888888888865677764 45777778777666544
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.85 E-value=2.5e-05 Score=73.44 Aligned_cols=118 Identities=25% Similarity=0.271 Sum_probs=62.1
Q ss_pred hHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCC
Q 006107 185 DKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASD 264 (661)
Q Consensus 185 e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~ 264 (661)
.++.+.+++...........+.|+|++|+|||+||+.+++.... ....++|++++ ++...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHHHHHHHhcc----
Confidence 44555555554321112257889999999999999999987542 22345566542 344444332211
Q ss_pred CCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhh--hhcccc-cC-CCCcEEEEEeCC
Q 006107 265 LNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVD--LKAPFL-AA-APNSKMIITTRH 321 (661)
Q Consensus 265 ~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~-~~-~~gs~ilvTTr~ 321 (661)
.........+.+ .-+|||||++......|.. +...+. .. ..+.++|+||..
T Consensus 104 -~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 -QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 122333333332 2399999997643333322 222121 11 245678888874
No 95
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.84 E-value=2.8e-05 Score=77.50 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=41.3
Q ss_pred CCCcceeecCCCCCccccccc-c-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
++.+|++|+|++|.++.+|.. + ++.+|++|+++++ .+..+|.. +..+++|+.++++.+
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC
Confidence 677788888888777777765 5 7788888888774 57777764 666777776666544
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.84 E-value=1.6e-05 Score=80.76 Aligned_cols=121 Identities=12% Similarity=-0.122 Sum_probs=84.6
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc-h----hhHhhHhhhhcCCcccCcC-CCCcceeecC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS-Y----LRMEAWSGVFGNISAVDET-LKKCLQFLRP 601 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~-~----~~~~~l~~~~~~l~~lP~~-~L~~LryL~L 601 (661)
.+.+++.+..+...... ...+..+++|+.|.+.++.... +.. . ...+.|+.....+..+|.. .+.+|++|+|
T Consensus 120 ~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence 34667776665544321 2245667888888887654321 101 1 1122233333455567766 8999999999
Q ss_pred CCCCcccccccc-cccccceeecccccccccCCcccccccccccccccccc
Q 006107 602 KYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 602 ~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~ 651 (661)
++|.|+.+|..+ .+.+|++|++++| .+..+|..+..+++|+.++++.+-
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 999999999999 9999999999985 799999999999999888876653
No 97
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.81 E-value=7.3e-05 Score=75.46 Aligned_cols=134 Identities=13% Similarity=0.231 Sum_probs=74.3
Q ss_pred ccccchhhHHHHHHHHhcC-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTS-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
.++|.+..++.+...+... ........+.|+|++|+|||++|+.+.+...... ...+.++.+...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccc-cHH
Confidence 4789999988888877652 1112345789999999999999999987643211 123455554322211 111
Q ss_pred HHHHHhccCCC--CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEEe
Q 006107 253 ALLESITSAAS--DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIITT 319 (661)
Q Consensus 253 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTT 319 (661)
.+ ++.... .......+...+.. ...-+|+||+++.........+...+.... .++.+|.||
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred Hh---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 11 111111 11111122222222 234699999999887666666655543221 234477777
Q ss_pred CC
Q 006107 320 RH 321 (661)
Q Consensus 320 r~ 321 (661)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.80 E-value=2.7e-05 Score=72.87 Aligned_cols=118 Identities=6% Similarity=-0.070 Sum_probs=83.2
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcc-cCcC--CCCcceeecCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISA-VDET--LKKCLQFLRPK 602 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~-lP~~--~L~~LryL~L~ 602 (661)
...+++.+..+.... ++.+..+++|++|.+.++........ ...+.|+.....+.. .|.. .|.+|++|+|+
T Consensus 44 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccC---hHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 357788887765443 44677889999999987744222111 111222222233333 3444 99999999999
Q ss_pred CCCccc-ccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 603 YTSERE-KKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 603 ~t~i~~-LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+|.++. .|..+ ++.+|++|++++|..+..+| .+..+++|+.++++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 999885 78889 99999999999976688998 6888888887777554
No 99
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.80 E-value=2e-05 Score=79.83 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=80.3
Q ss_pred CcceEEEeeeCCCccc-cccccccCCCCceEEeecc-cc--CCCCCchh---hHhhHhhhhcCCc-ccCcC--CCCccee
Q 006107 529 ERVRHSSYGRGWLDGK-NKFEVFYEIELLRTFLPFC-IR--GGPNTSYL---RMEAWSGVFGNIS-AVDET--LKKCLQF 598 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~-~~~~~~~~~~~LrsL~~~~-~~--~~~~~~~~---~~~~l~~~~~~l~-~lP~~--~L~~Lry 598 (661)
.+++++.+........ ..+..+.++++|++|.+.+ .. +..+.... ..+.|+.....+. .+|.. ++.+|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 4567777766554420 1235567788888888763 21 11222111 1122222223344 56766 8999999
Q ss_pred ecCCCCCcc-cccccc-cccccceeecccccccc-cCCccccccc-cccccccccc
Q 006107 599 LRPKYTSER-EKKLSV-SIQNWNMAIWCKHTYLV-TGSVNLNFTQ-FLQLSDFGTH 650 (661)
Q Consensus 599 L~L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~-~LP~~i~~l~-~L~~~~~~~~ 650 (661)
|+|++|.+. .+|..+ +|.+|++|++++| .+. .+|..+..+. +|+.++++.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCC
Confidence 999999987 789999 9999999999885 566 8999998887 8887777655
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.80 E-value=1.8e-05 Score=85.42 Aligned_cols=121 Identities=11% Similarity=-0.138 Sum_probs=85.9
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCch----hhHhhHhhhhcCCcccCcC-CCCcceeecC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTSY----LRMEAWSGVFGNISAVDET-LKKCLQFLRP 601 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~~----~~~~~l~~~~~~l~~lP~~-~L~~LryL~L 601 (661)
.+.+++.+..+...... ...+..+++|++|.+.++.... +... ...+.|+.....+..+|.. .+.+|++|+|
T Consensus 120 ~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 120 QGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp SSCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence 45677777666544321 2345678889998887654321 1111 1122233333455566766 8999999999
Q ss_pred CCCCcccccccc-cccccceeecccccccccCCcccccccccccccccccc
Q 006107 602 KYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 602 ~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~ 651 (661)
++|.|+.+|+++ .+.+|++|++++ +.+..+|..+..+.+|+.++++.+-
T Consensus 199 s~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 199 SSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 999999999999 999999999998 5799999999999999887776653
No 101
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.80 E-value=3.3e-05 Score=76.96 Aligned_cols=120 Identities=7% Similarity=-0.119 Sum_probs=78.4
Q ss_pred CcceEEEeeeCC-CccccccccccCCCCceEEeeccccCCCC-Cc----hhhHhhHhhhhcCCcccCcC---CCCcceee
Q 006107 529 ERVRHSSYGRGW-LDGKNKFEVFYEIELLRTFLPFCIRGGPN-TS----YLRMEAWSGVFGNISAVDET---LKKCLQFL 599 (661)
Q Consensus 529 ~~~r~ls~~~~~-~~~~~~~~~~~~~~~LrsL~~~~~~~~~~-~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL 599 (661)
.+.+++.+..+. .... ....+..+++|++|.+.++..... .. ....+.|+.....+..+|.. .+.+|++|
T Consensus 80 ~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp TTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 456666665543 2221 134456777888887766533111 11 11122233223445566664 78999999
Q ss_pred cCCCCCccccccc-c-cccccceeecccccccccC-Cccccccccccccccccc
Q 006107 600 RPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 600 ~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
+|++|.++.+|.. + ++.+|++|+++++ .+..+ |..+..+++|+.++++.+
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC
Confidence 9999999999886 6 8999999999985 56665 778888888888777665
No 102
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.79 E-value=2.1e-05 Score=83.88 Aligned_cols=108 Identities=7% Similarity=-0.086 Sum_probs=50.1
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+.+.+.+.+..+...... ...+.++++|++|.+.++.... +.. ....+.|+.....+..+|.. .+.+|+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 34455666666555443321 2345566666666665543210 000 01112222222334445443 556666
Q ss_pred eecCCCCCcccccc-cc-cccccceeecccccccccCCc
Q 006107 598 FLRPKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSV 634 (661)
Q Consensus 598 yL~L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~ 634 (661)
+|+|++|.|+.+|. .+ ++.+|++|++++|..+..+|.
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 66666666555555 23 555555555555444444443
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.79 E-value=2.7e-05 Score=87.92 Aligned_cols=124 Identities=10% Similarity=-0.101 Sum_probs=86.2
Q ss_pred cccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCC-Cch----hhHhhHhhhhcCCcccCcC---CCCcc
Q 006107 525 SRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPN-TSY----LRMEAWSGVFGNISAVDET---LKKCL 596 (661)
Q Consensus 525 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~-~~~----~~~~~l~~~~~~l~~lP~~---~L~~L 596 (661)
...+.+++++.+..+...... ...+.++++|++|.+.++..... ... ...+.|+.....+..+|.. ++.+|
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 345678999998876655432 34578899999999986543211 111 1223344333456688874 89999
Q ss_pred eeecCCCCCccccc-ccc-cccccceeecccccccccC-Cccccccccccccccccc
Q 006107 597 QFLRPKYTSEREKK-LSV-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 597 ryL~L~~t~i~~LP-~si-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
++|+|++|.+..+| .++ +|.+|++|++++| .+..+ |..++++++|+.++++.+
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCC
Confidence 99999999998888 467 9999999999986 45554 455778888887777554
No 104
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.78 E-value=0.0003 Score=80.30 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=88.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEE-EeCCCCCHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWV-CVSDNFDVFNILK 252 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv-~v~~~~~~~~~~~ 252 (661)
..++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+.+..... .......+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~----~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS----SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCccCCHHHHHHHHHHHhccC----CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH--------
Confidence 468999999999999986532 2346799999999999999998753211 0012333322 11110
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHH-hhcCCceEEEEEeCCCCC--------ChhhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 253 ALLESITSAASDLNTLNEVQVQLK-KAVDGKRFLLVLDDVRNE--------DYSLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 253 ~il~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
+.+ .......+.....+. .....++.+|++||++.. .......+...+.. ..+..+|.+|....
T Consensus 254 -----~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -----LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQE 326 (758)
T ss_dssp ------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHH
T ss_pred -----hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchH
Confidence 000 011123333323332 333345789999999865 12222223333333 23556777766544
Q ss_pred hhccc-------CCCceeecCCCChHhHHHHHHHhh
Q 006107 324 VASTM-------GPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 324 v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
..... .....+.+.+.+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32211 112468899999999988887653
No 105
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00035 Score=71.83 Aligned_cols=176 Identities=17% Similarity=0.122 Sum_probs=96.8
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|-++.+++|.+.+.-+ -+-..++-|.++||+|.|||.||+.+++.... ..+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHHhhc-
Confidence 45788888888877765320 01233456889999999999999999986432 223344332110
Q ss_pred HHHHHHHHHHhccCCCCCCCHHH-HHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CC
Q 006107 248 FNILKALLESITSAASDLNTLNE-VQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AA 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 310 (661)
.. ....+. +...+...-...+++|+||+++.... .....++..+.. ..
T Consensus 221 -------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 -------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 001111 11122222235789999999986421 012223332222 23
Q ss_pred CCcEEEEEeCChhhh-----cccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVA-----STMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||...... +...-...+++...+.++-.++|..+.-.-. ...... ...|++.|.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 344566677654322 1112336788988888888888877653221 111112 256778888864
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.76 E-value=4e-05 Score=71.45 Aligned_cols=83 Identities=8% Similarity=-0.087 Sum_probs=65.2
Q ss_pred CCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCccccccc-c-cccccceeeccccccc
Q 006107 554 ELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYL 629 (661)
Q Consensus 554 ~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l 629 (661)
++|+.|.+.+. .+..+|.. .+.+|++|+|+++.|+.+|.. + .|.+|++|+|++ ..+
T Consensus 31 ~~l~~L~L~~n-------------------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l 90 (193)
T 2wfh_A 31 RDVTELYLDGN-------------------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRL 90 (193)
T ss_dssp TTCCEEECCSS-------------------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred CCCCEEECCCC-------------------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Ccc
Confidence 57888877653 33456655 899999999999999999864 7 999999999998 579
Q ss_pred ccCCc-cccccccccccccccccccccc
Q 006107 630 VTGSV-NLNFTQFLQLSDFGTHIGARKS 656 (661)
Q Consensus 630 ~~LP~-~i~~l~~L~~~~~~~~~~~~~~ 656 (661)
..+|. .+..+.+|+.++++.+-.+..+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 99887 4788999998888766444333
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.75 E-value=3.6e-05 Score=76.97 Aligned_cols=115 Identities=7% Similarity=-0.045 Sum_probs=66.2
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcC-CCCcceeecCCCCC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTS 605 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~ 605 (661)
+.+++.+..+.... ++.+..+++|+.|.+.++........ ...+.|+.....+..++.. .+.+|++|+|++|.
T Consensus 91 ~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 91 NLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TCCEEECCSSCCCC---GGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCcCCC---ChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCc
Confidence 44555555443322 34455666666666655433211110 0111122222333445444 77788888888888
Q ss_pred cccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 606 EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 606 i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
++.+|. + .+.+|++|++++| .+..+|. +..+++|+.+++..+
T Consensus 168 l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 168 ISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred cccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 888776 7 8888888888774 6777764 777777776666544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.73 E-value=4e-05 Score=76.66 Aligned_cols=116 Identities=10% Similarity=-0.053 Sum_probs=81.8
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCc---hhhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTS---YLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~---~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.+++.+..+.... ++.+.++++|+.|.+.++....... ....+.|+.....+..+|.. .+.+|++|+|++|
T Consensus 68 ~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTD---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144 (291)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCccCC---CcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCC
Confidence 567788877665544 2337788999999988764322111 11122233333455566655 8999999999999
Q ss_pred Ccccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.++.+ ..+ ++.+|++|++++| .+..+|. +..+++|+.++++.+
T Consensus 145 ~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 145 KITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred cCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC
Confidence 99988 578 9999999999985 6888876 888888887777655
No 109
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.73 E-value=3.3e-05 Score=77.77 Aligned_cols=123 Identities=10% Similarity=-0.051 Sum_probs=74.8
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCC----Cch---hhHhhHhhhhcCCcccCcC--CCCcc
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPN----TSY---LRMEAWSGVFGNISAVDET--LKKCL 596 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~----~~~---~~~~~l~~~~~~l~~lP~~--~L~~L 596 (661)
..+.+.+++.+..+...... ...+.++++|++|.+.++..... ... ...+.|+.....+..+|.. .+.+|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 34567888888776654321 22367889999999876543110 000 0112222222333456665 78888
Q ss_pred eeecCCCCCcccccc--cc-cccccceeeccccccccc-CCccccccccccccccccc
Q 006107 597 QFLRPKYTSEREKKL--SV-SIQNWNMAIWCKHTYLVT-GSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 597 ryL~L~~t~i~~LP~--si-~L~~Lq~L~l~~c~~l~~-LP~~i~~l~~L~~~~~~~~ 650 (661)
++|+|+++.++.+|. .+ ++.+|++|++++|. +.. .|..+..+++|+.++++.+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC
Confidence 888888888887775 56 88888888887753 443 4445667777776666544
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.73 E-value=3.1e-05 Score=78.20 Aligned_cols=116 Identities=7% Similarity=-0.084 Sum_probs=77.2
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.+.+.+..+.... ++.+..+++|+.|.+.++........ ...+.|+.....+..+|.. .+.+|++|+|++|
T Consensus 63 ~~L~~L~L~~n~i~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 63 NNLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCC---ChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence 467777776665443 23377888888888876543221111 1122233223445566655 8888888888888
Q ss_pred Ccccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.++.+|. + ++.+|++|++++| .+..+|. +..+++|+.++++.+
T Consensus 140 ~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 140 QITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC
Confidence 8888887 8 8888999999885 6788876 777777777666554
No 111
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.72 E-value=3.8e-05 Score=77.75 Aligned_cols=119 Identities=9% Similarity=-0.043 Sum_probs=79.9
Q ss_pred CcceEEEeee-CCCccccccccccCCCCceEEeeccccCC--CCCchh---hHhhHhhhhcCCc-ccCcC--CCCcceee
Q 006107 529 ERVRHSSYGR-GWLDGKNKFEVFYEIELLRTFLPFCIRGG--PNTSYL---RMEAWSGVFGNIS-AVDET--LKKCLQFL 599 (661)
Q Consensus 529 ~~~r~ls~~~-~~~~~~~~~~~~~~~~~LrsL~~~~~~~~--~~~~~~---~~~~l~~~~~~l~-~lP~~--~L~~LryL 599 (661)
...+++.+.. +..... .+..+.++++|++|.+.++... .+.... ..+.|+.....+. .+|.. .+.+|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 4567777763 433321 2445777888888887765431 121111 1122222222333 56776 89999999
Q ss_pred cCCCCCcc-cccccc-ccc-ccceeecccccccc-cCCccccccccccccccccc
Q 006107 600 RPKYTSER-EKKLSV-SIQ-NWNMAIWCKHTYLV-TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 600 ~L~~t~i~-~LP~si-~L~-~Lq~L~l~~c~~l~-~LP~~i~~l~~L~~~~~~~~ 650 (661)
+|++|.++ .+|.++ ++. +|++|+++++ .+. .+|..+..++ |+.++++.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSS
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCC
Confidence 99999988 899999 998 9999999985 455 8899998887 887777655
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.72 E-value=3.8e-05 Score=78.88 Aligned_cols=35 Identities=6% Similarity=-0.135 Sum_probs=17.6
Q ss_pred CCCcceeecCCCCCcccccccc-cccccceeeccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHT 627 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~ 627 (661)
.+.+|++|+|++|.+..+|. + .+.+|++|++++|.
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred CCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 44555555555555555444 4 55555555554443
No 113
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.72 E-value=3.6e-05 Score=83.86 Aligned_cols=98 Identities=6% Similarity=-0.037 Sum_probs=51.8
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcCCCCcceeecC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDETLKKCLQFLRP 601 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~~L~~LryL~L 601 (661)
.+.+++++.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|...+.+|++|+|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L 97 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97 (520)
T ss_dssp CCTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEEC
T ss_pred ccccccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEec
Confidence 4467888888776654421 2457788999999887654311 000 011122222223333444445555555555
Q ss_pred CCCCccc--ccccc-cccccceeeccc
Q 006107 602 KYTSERE--KKLSV-SIQNWNMAIWCK 625 (661)
Q Consensus 602 ~~t~i~~--LP~si-~L~~Lq~L~l~~ 625 (661)
++|.++. +|.++ +|.+|++|++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecC
Confidence 5555543 34555 555555555555
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.72 E-value=5.3e-05 Score=83.47 Aligned_cols=104 Identities=8% Similarity=-0.050 Sum_probs=60.2
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcCCCCcceeec
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDETLKKCLQFLR 600 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~~L~~LryL~ 600 (661)
..+...+++.+..+...... ...+..+++|++|.+.++.... +.. ....+.|+.....+..+|...|.+|++|+
T Consensus 49 ~~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~ 127 (562)
T 3a79_B 49 DLPPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD 127 (562)
T ss_dssp TSCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEE
T ss_pred CCCCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEE
Confidence 34567888888776655432 3467888999999887654311 111 11122333333444555555666666667
Q ss_pred CCCCCccccc--ccc-cccccceeeccccccccc
Q 006107 601 PKYTSEREKK--LSV-SIQNWNMAIWCKHTYLVT 631 (661)
Q Consensus 601 L~~t~i~~LP--~si-~L~~Lq~L~l~~c~~l~~ 631 (661)
|++|.+..+| ..+ +|.+|++|++++ ..+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~ 160 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQ 160 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCT
T ss_pred CCCCCccccCchHhhcccCcccEEecCC-Ccccc
Confidence 7666666554 566 666777776665 34443
No 115
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.71 E-value=0.00067 Score=66.22 Aligned_cols=184 Identities=16% Similarity=0.083 Sum_probs=94.5
Q ss_pred cCccccchhhHHHHHHHHh---cCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVN---TSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~---~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..++++.+.+. ... .....+-+.|+|++|+||||||+.+++... . . .+.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~-~---~~~i~~~~~~~- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--V-P---FFTISGSDFVE- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--C-C---EEEECSCSSTT-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C-C---EEEEeHHHHHH-
Confidence 3568999888777665542 110 011233588999999999999999987532 1 2 23333221100
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 311 (661)
.. ...........+.......+.++++|+++.... .....+...+.. ...
T Consensus 84 -------------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 011122233333444455678999999843110 111222222211 233
Q ss_pred CcEEEEEeCChhhh-ccc-C---CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCC-ChHHHHHH
Q 006107 312 NSKMIITTRHSDVA-STM-G---PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRG-LPLAAKTL 385 (661)
Q Consensus 312 gs~ilvTTr~~~v~-~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~ 385 (661)
+..||.||...... ... . -...+.+...+.++-.+++..+.-... .. ... ....++..+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~-~~~---~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LA-PDI---DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BC-TTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CC-ccc---cHHHHHHHcCCCCHHHHHHH
Confidence 45667777654321 111 1 124677888888888888876652211 11 111 12456777888 66555443
No 116
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.70 E-value=2.6e-05 Score=75.44 Aligned_cols=51 Identities=6% Similarity=-0.153 Sum_probs=24.4
Q ss_pred eecCCCC-Cccccccc-c-cccccc-eeecccccccccCCcccccccccccccccc
Q 006107 598 FLRPKYT-SEREKKLS-V-SIQNWN-MAIWCKHTYLVTGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 598 yL~L~~t-~i~~LP~s-i-~L~~Lq-~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~ 649 (661)
+|+++++ .++.+|.. + ++.+|+ +|++++ ..+..+|..+....+|+.++++.
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTT
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCC
Confidence 5555555 45555543 3 555555 555554 24555555443334444444433
No 117
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.70 E-value=6.2e-05 Score=81.00 Aligned_cols=124 Identities=10% Similarity=-0.091 Sum_probs=79.9
Q ss_pred cccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcC---CCCcc
Q 006107 525 SRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDET---LKKCL 596 (661)
Q Consensus 525 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~---~L~~L 596 (661)
...+..++.+.+..+...... ...+.++++|++|.+.++.... +.. ....+.|+.....+..+|.. ++.+|
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 345667888888776654421 3457789999999987653311 111 11223333333455667764 78888
Q ss_pred eeecCCCCCcccc-cccc-cccccceeecccccccccCC-ccccccccccccccccc
Q 006107 597 QFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGS-VNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 597 ryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP-~~i~~l~~L~~~~~~~~ 650 (661)
++|+|++|.+..+ |..+ ++.+|++|+++++ .+..++ ..+..+.+|+.++++.+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC
Confidence 8888888887776 4456 8888888888874 566554 46777777777666554
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.69 E-value=5.5e-05 Score=87.63 Aligned_cols=122 Identities=9% Similarity=-0.045 Sum_probs=84.3
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCC--C-CCc---hhhHhhHhhhhcCCccc-CcC--CCCcce
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG--P-NTS---YLRMEAWSGVFGNISAV-DET--LKKCLQ 597 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~--~-~~~---~~~~~~l~~~~~~l~~l-P~~--~L~~Lr 597 (661)
.+.+++++.+..+...... ...+.++++|++|.+.++... . +.. ....+.|+.....+..+ |+. +|.+|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 6678999998877655432 356788999999999876321 1 111 12233444334455555 555 899999
Q ss_pred eecCCCCCccc-cccc--c-cccccceeecccccccccCC--ccccccccccccccccc
Q 006107 598 FLRPKYTSERE-KKLS--V-SIQNWNMAIWCKHTYLVTGS--VNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~-LP~s--i-~L~~Lq~L~l~~c~~l~~LP--~~i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.+.. +|.+ + +|.+|++|+|++| .+..++ ..+++|++|+.++++.+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 99999998775 5665 7 9999999999885 566653 46888888888777655
No 119
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.69 E-value=4.7e-05 Score=79.62 Aligned_cols=120 Identities=8% Similarity=-0.035 Sum_probs=78.0
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CC-c---hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NT-S---YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~-~---~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+++.+..+...... ...+..+++|++|.+.++.... +. . ....+.|+.....+..+|.. ++.+|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56777777665433321 1225667888888887653311 11 1 11122233223445556544 889999999
Q ss_pred CCCCCcccccccc--cccccceeecccccccccCCc-cccccccccccccccc
Q 006107 601 PKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~~ 650 (661)
|++|.++.+|..+ ++.+|++|++++| .+..+|. .+..+++|+.++++.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC
Confidence 9999999999875 8999999999885 5777755 4788888887777655
No 120
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.69 E-value=5.7e-05 Score=76.21 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=83.1
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.+++.+..+.... ++.+..+++|+.|.+.++........ ...+.|+.....+..+|.. .+.+|++|+|++|
T Consensus 85 ~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 85 TKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CSCCEEECCSCCCSC---CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCC---chhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC
Confidence 467788887765443 45678899999999987654221111 1112222223344566656 8999999999999
Q ss_pred Ccccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.++.+|. + ++.+|++|++++| .+..+|. +..+.+|+.++++.+
T Consensus 162 ~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 162 QVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS
T ss_pred cCCCChh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC
Confidence 9999998 9 9999999999985 6888886 778888887777655
No 121
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.69 E-value=0.00012 Score=73.75 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcC--C--------CCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTS--S--------DHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|.+..++.+...+... . .......+.|+|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999998877541 0 00123457799999999999999998753
No 122
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00059 Score=71.27 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|-++.+++|.+.+.-+ .+-..++-|.++||+|+|||+||+.+++.... ..+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhhcc-
Confidence 45788888888877765320 01234567889999999999999999986432 223344332111
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHH-HHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CC
Q 006107 248 FNILKALLESITSAASDLNTLNEV-QVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AA 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l-~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 310 (661)
.. ....+.. ...+...-...+++|++|+++.... .....++..+.. ..
T Consensus 254 -------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 00 0111111 1122222245789999999975310 112233333322 23
Q ss_pred CCcEEEEEeCChhhhcc--cCC---CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVAST--MGP---IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~~--~~~---~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||........ ... ...+++...+.++-.++|..+...-.... ... ...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-EFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-CCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-ccC----HHHHHHhCCCCC
Confidence 45567777765433221 112 24678888888888888876653322111 111 256778888864
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.65 E-value=7.5e-05 Score=68.42 Aligned_cols=80 Identities=6% Similarity=-0.098 Sum_probs=63.0
Q ss_pred CCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCCCCCccccccc-c-cccccceeeccccc
Q 006107 553 IELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHT 627 (661)
Q Consensus 553 ~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~ 627 (661)
.++|++|.+.+.. +..+|.. .+.+|++|+|+++.++.+|.. + .+.+|++|++++ .
T Consensus 27 ~~~l~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N 86 (177)
T 2o6r_A 27 PSSATRLELESNK-------------------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-N 86 (177)
T ss_dssp CTTCSEEECCSSC-------------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCCCcEEEeCCCc-------------------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-C
Confidence 3678888776542 3344443 789999999999999999987 5 999999999998 5
Q ss_pred ccccCCcc-ccccccccccccccccc
Q 006107 628 YLVTGSVN-LNFTQFLQLSDFGTHIG 652 (661)
Q Consensus 628 ~l~~LP~~-i~~l~~L~~~~~~~~~~ 652 (661)
.+..+|.. +..+++|+.++++.+-.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcc
Confidence 79999986 57888888887766533
No 124
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.65 E-value=5.9e-05 Score=82.72 Aligned_cols=124 Identities=6% Similarity=-0.074 Sum_probs=82.2
Q ss_pred ccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-C-Cc---hhhHhhHhhhhcCCcccCcC---CCCcce
Q 006107 526 RRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-N-TS---YLRMEAWSGVFGNISAVDET---LKKCLQ 597 (661)
Q Consensus 526 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~-~~---~~~~~~l~~~~~~l~~lP~~---~L~~Lr 597 (661)
..+..++++.+..+...... ...+..+++|++|.+.++.... + .. ....+.|+.....+..+|.. .|.+|+
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCCTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred cCCCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 34467888888776654321 3457889999999988764311 1 11 11223333333455566654 888888
Q ss_pred eecCCCCCccc--ccccc-cccccceeecccccccccCCc-cccccccccccccccc
Q 006107 598 FLRPKYTSERE--KKLSV-SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~--LP~si-~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.++. .|..+ +|.+|++|++++|..+..+|. .+..+++|+.++++.+
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99998888874 46778 888899999888765777774 6777888877666543
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=5.5e-05 Score=74.41 Aligned_cols=116 Identities=7% Similarity=-0.027 Sum_probs=78.2
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCC--chhhHhhHhhhhcCCcccCcC-CCCcceeecCCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNT--SYLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTS 605 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~--~~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~ 605 (661)
.+.+.+.+..+.... .+.+..+++|+.|.+.++...... .....+.|+.....+..+|.. .+.+|++|+|++|.
T Consensus 63 ~~L~~L~L~~N~i~~---~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 63 TNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCccCC---ChhhccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCChhhcCcccccEEECCCCc
Confidence 467777776665443 233778888999988776432111 111222233333455566655 88899999999999
Q ss_pred cccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 606 EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 606 i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|+.+| .+ .+.+|++|++++| .+..+ ..+..+++|+.++++.+
T Consensus 140 i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 140 LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 98887 68 9999999999884 67777 56778888887776554
No 126
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.64 E-value=9e-05 Score=75.49 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=34.1
Q ss_pred CCCcceeecCCCCCcccccc-cc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.++.+|. .+ .+.+|++|++++| .+..+|..+..+++|+.++++.+
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 55666666666666665554 45 6666666666653 45666666666666655555433
No 127
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.64 E-value=5.4e-05 Score=83.71 Aligned_cols=116 Identities=7% Similarity=-0.039 Sum_probs=73.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.++|.+..+.... ++.+..+++|+.|.+.++........ ..++.|+.....+..++.. .|.+|++|+|++|
T Consensus 87 ~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TTCCEEECCSSCCCC---CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS
T ss_pred CCCCEEECcCCCCCC---ChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC
Confidence 456666666554332 34566777788887766543221111 1112222222344455444 8888888888888
Q ss_pred Ccccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.|..+|+ + .|.+|++|+|++| .+..+| .+..|.+|+.+++..+
T Consensus 164 ~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 164 QISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred cCCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 8888877 8 8888888888875 677776 5777777777666554
No 128
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.64 E-value=0.0002 Score=76.45 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=61.0
Q ss_pred EEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEe----------C----Chhhh-cccCCCceeecCCCChHhHHHHH
Q 006107 284 FLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITT----------R----HSDVA-STMGPIEHYNLKSLLDDDCWSIF 348 (661)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT----------r----~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf 348 (661)
-++++|+++..+....+.+...+-..... .+|+.| . ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999998877788887777654444 344344 2 00000 01122245789999999999999
Q ss_pred HHhhcCCCCCCcchhhHHHHHHHHHHc-CCChHHHHHHH
Q 006107 349 IKHALEGRDLSAHQISESFRKKVVGKC-RGLPLAAKTLE 386 (661)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~I~~~~-~G~PLai~~~~ 386 (661)
...+..... ....+....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 877532111 11234567788888 78887655543
No 129
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.63 E-value=5.6e-05 Score=76.11 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCCcceeecCCCCCcccc-cccc-cccccceeecccccccccCCc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGT 649 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~ 649 (661)
.+.+|++|+|++|.++.+ |..+ ++.+|++|+++++ .+..+|. .+..+.+|+.++++.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTT
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCC
Confidence 555666666666665555 3445 5666666666553 3555443 344455555444433
No 130
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.63 E-value=0.00013 Score=74.47 Aligned_cols=58 Identities=16% Similarity=-0.049 Sum_probs=46.4
Q ss_pred CCCcceeecCCCCCcccccc-cc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.++.+|. .+ .+.+|++|++++| .+..+|..+..+++|+.++++.+
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 77888888888888888776 56 8888888888874 68888888888888887777655
No 131
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.63 E-value=8.3e-05 Score=73.17 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=68.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|.+..+.++.+.+....... ..+.|+|++|+|||+||+.+++...... ...+.++++.- .. +.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~--~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~~-~~-~~~~~--- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLD--KPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAAL-NE-NLLDS--- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSC--SCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGGS-CH-HHHHH---
T ss_pred ccceeCCHHHHHHHHHHHHHhCCC--CCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCCC-Ch-hHHHH---
Confidence 357899999988887775422111 3577999999999999999987643111 12344555432 22 22211
Q ss_pred HhccCCCCC-CCH-HHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeCC
Q 006107 257 SITSAASDL-NTL-NEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTRH 321 (661)
Q Consensus 257 ~l~~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr~ 321 (661)
.+.+..... ... ......+.. ...-+|+||+++.........+...+... ..+.++|.||..
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 111111000 000 000001111 12348999999987755555555444321 235678888875
No 132
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.63 E-value=6.4e-05 Score=83.07 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=21.5
Q ss_pred CCCcceeecCCCCCcccccccc-cccccceeecccccccccCC
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGS 633 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP 633 (661)
.|.+|++|+|++|.|..+| .+ .|.+|+.|+|++| .+...|
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSE-EEECCC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCC-cCcCCc
Confidence 5555555555555555554 35 5555555555553 344443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.62 E-value=4.6e-05 Score=69.46 Aligned_cols=73 Identities=7% Similarity=-0.085 Sum_probs=58.8
Q ss_pred cCCcccCcCCCCcceeecCCCCCcccc-cccc-cccccceeecccccccccCCccc-cccccccccccccccccccc
Q 006107 583 GNISAVDETLKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGTHIGARKS 656 (661)
Q Consensus 583 ~~l~~lP~~~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~~~~~~~~ 656 (661)
..++.+|..-..+|++|+|+++.|+.+ |..+ +|.+|++|+|++ ..+..+|.++ ..+.+|+.++++.+--+..+
T Consensus 19 n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 19 KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 456677776457899999999999999 5567 999999999998 6899999875 78999998888766444333
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.62 E-value=0.0001 Score=68.60 Aligned_cols=58 Identities=9% Similarity=-0.155 Sum_probs=50.9
Q ss_pred CCCcceeecCCCCCcccc-cccc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|+++.|+.+ |..+ +|.+|++|+|++ +.+..+|.. +..+++|+.++++.+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC
Confidence 889999999999999998 6788 999999999998 578888876 788999988887655
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.61 E-value=0.0009 Score=70.97 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=97.0
Q ss_pred cCccccchhhHHHHHHHHhc---C-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVNT---S-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~---~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..++++.+.+.. . -+...++-+.|+|++|+|||+||+.+++.... .| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH
Confidence 35689999877777665432 1 01112334789999999999999999875321 22 33333321110
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AAP 311 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 311 (661)
+. ..........+.......+.+|+||+++.... .....+...+.. ...
T Consensus 89 ----------~~-----g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------FV-----GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------CT-----THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------Hh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 00 00111222233444456789999999965321 112333333221 224
Q ss_pred CcEEEEEeCChhhhc-c-cC---CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 312 NSKMIITTRHSDVAS-T-MG---PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 312 gs~ilvTTr~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
+..||.||....... . .. -...+.+...+.++-.+++..++.... ...... ...|++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 566777777654322 1 11 124678888888888888876653221 111111 245788898987
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=8.3e-05 Score=81.61 Aligned_cols=96 Identities=11% Similarity=-0.094 Sum_probs=74.6
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC-CCCcceeecCCCCCcc
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTSER 607 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~i~ 607 (661)
.+.+.|.+..+..... +..+..+++|++|.+.++ .++.+|.. .|.+|++|+|++|.|+
T Consensus 463 ~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N-------------------~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 463 LLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDN-------------------ALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSS-------------------CCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred ccCcEeecCccccccc--chhhhcCCCCCEEECCCC-------------------CCCCCcccCCCCCCcEEECCCCCCC
Confidence 3577788777665532 456788999999998764 23346644 8999999999999999
Q ss_pred cc--cccc-cccccceeecccccccccCCccccc----cccccccc
Q 006107 608 EK--KLSV-SIQNWNMAIWCKHTYLVTGSVNLNF----TQFLQLSD 646 (661)
Q Consensus 608 ~L--P~si-~L~~Lq~L~l~~c~~l~~LP~~i~~----l~~L~~~~ 646 (661)
.+ |.++ +|.+|++|+|++ +.+..+|..+.. +.+|+.++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 99 8999 999999999998 579999887654 55666543
No 137
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=9e-05 Score=72.84 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred CcceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDF 647 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~ 647 (661)
.+|++|+|++|.|+.+| .+ ++.+|++|++++ ..+..+| .+..+++|+.+++
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEEC
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEEC
Confidence 44555555555554443 34 555555555544 2344444 3444444444444
No 138
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00072 Score=70.50 Aligned_cols=176 Identities=16% Similarity=0.097 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHHhc---------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNT---------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|-++.+++|.+.+.- .-+-..++-|.++|++|+|||+||+.+++.... ..+.++.+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L--- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSEL--- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGG---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHh---
Confidence 3578888888888765422 101234567889999999999999999986432 2233433221
Q ss_pred HHHHHHHHHHhccCCCCCCCHHH-HHHHHHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CC
Q 006107 248 FNILKALLESITSAASDLNTLNE-VQVQLKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AA 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 310 (661)
.... ....+. +...+...-...+++|++|+++.... .....++..+.. ..
T Consensus 280 -----------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 280 -----------VQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -----------CCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -----------hccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 1000 011111 11222222345789999999975310 011122222222 22
Q ss_pred CCcEEEEEeCChhhhc-----ccCCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVAS-----TMGPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||....... ...-...+++...+.++-.++|..+...-. ....-. ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 3445566665432221 112336788888888888888877653221 111112 256778888864
No 139
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.57 E-value=0.0005 Score=68.97 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
..++|++..+.++.+.+...... ...|.|+|++|+|||++|+.+.+.....+..| +.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~--~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~~--- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS--DATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLES--- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST--TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhCC--CCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHHH---
Confidence 35899999999998888663311 23477999999999999999987532111122 334444321 222221
Q ss_pred HhccCCCCCCC--HHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeCChh
Q 006107 257 SITSAASDLNT--LNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTRHSD 323 (661)
Q Consensus 257 ~l~~~~~~~~~--~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr~~~ 323 (661)
.+.+.....-. .......+... ..-.|+||+++.........+...+... ....+||.||...-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 22221110000 00000011111 1236899999988765555555444322 23467888877531
Q ss_pred ---hhc-ccC-------CCceeecCCCC--hHhHHHHHH
Q 006107 324 ---VAS-TMG-------PIEHYNLKSLL--DDDCWSIFI 349 (661)
Q Consensus 324 ---v~~-~~~-------~~~~~~l~~L~--~~e~~~Lf~ 349 (661)
+.. .+. ....+.+.+|. .++...++.
T Consensus 149 ~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 149 AEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHH
Confidence 111 010 02346788887 455554444
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.57 E-value=4.5e-05 Score=69.25 Aligned_cols=99 Identities=12% Similarity=-0.034 Sum_probs=71.1
Q ss_pred CCCCceEEeeccccCC---CCCc---hhhHhhHhhhhcCCcccCcC-CCCcceeecCCCCCccc-ccccc-cccccceee
Q 006107 552 EIELLRTFLPFCIRGG---PNTS---YLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTSERE-KKLSV-SIQNWNMAI 622 (661)
Q Consensus 552 ~~~~LrsL~~~~~~~~---~~~~---~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~i~~-LP~si-~L~~Lq~L~ 622 (661)
..++|+.|.+.++... .+.. ....+.|+.....+..++.. .+.+|++|+|++|.+.. +|..+ ++.+|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3578999998876532 2211 11223333333445566444 99999999999999988 77777 899999999
Q ss_pred cccccccccCC--cccccccccccccccccc
Q 006107 623 WCKHTYLVTGS--VNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 623 l~~c~~l~~LP--~~i~~l~~L~~~~~~~~~ 651 (661)
+++| .+..+| ..+..+++|+.++++.+-
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9985 799988 688889999888776653
No 141
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.57 E-value=8.7e-05 Score=82.48 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=82.9
Q ss_pred ccccCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCC--CCCc---hhhHhhHhhhhcCCccc-CcC--CCCc
Q 006107 524 SSRRFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG--PNTS---YLRMEAWSGVFGNISAV-DET--LKKC 595 (661)
Q Consensus 524 ~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~--~~~~---~~~~~~l~~~~~~l~~l-P~~--~L~~ 595 (661)
+..++..++++.+..+...... ...+.++++|++|.+.++... .+.. ....+.|+.....+..+ |.. ++.+
T Consensus 28 P~~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CTTSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCCCCCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 3445678899998877655432 346788999999999876431 1111 11223333333445455 444 8899
Q ss_pred ceeecCCCCCcccc-cccc-cccccceeecccccccccC--Cccccccccccccccccc
Q 006107 596 LQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTG--SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 596 LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~L--P~~i~~l~~L~~~~~~~~ 650 (661)
|++|+|++|.++.+ |..+ ++.+|++|++++| .+..+ |..+ .+++|+.++++.+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n 163 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNN 163 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSS
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccC
Confidence 99999999998888 6778 9999999999885 57776 4433 3777777776554
No 142
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.56 E-value=7.1e-05 Score=77.08 Aligned_cols=121 Identities=9% Similarity=-0.095 Sum_probs=82.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCc--C--CCCcceee
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDE--T--LKKCLQFL 599 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~--~--~L~~LryL 599 (661)
.+.+++.+..+..... ....+.++++|++|.+.++.... +.. ....+.|+.....+..+|. . .+.+|++|
T Consensus 76 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 4567777765544332 12346778888988887654321 111 1112233333345668887 2 89999999
Q ss_pred cCCCCC-ccccc-ccc-cccccceeecccccccccC-Ccccccccccccccccccc
Q 006107 600 RPKYTS-EREKK-LSV-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 600 ~L~~t~-i~~LP-~si-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~~ 651 (661)
++++|. +..+| ..+ ++.+|++|++++| .+..+ |..+..+++|+.++++.+.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCc
Confidence 999994 88875 567 9999999999986 46655 7889999999888776553
No 143
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=5e-05 Score=87.26 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=77.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeecccc-CCC---CCchh----------hHhhHhhhhcCCcccCc--C-
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIR-GGP---NTSYL----------RMEAWSGVFGNISAVDE--T- 591 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~-~~~---~~~~~----------~~~~l~~~~~~l~~lP~--~- 591 (661)
.+.++|.+..+..... .+..+.++++|++|.+.++. ... |.... ..+.|+.....+..+|. .
T Consensus 491 ~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 4577788776653332 24567889999999887764 211 11000 11222222334557787 4
Q ss_pred -CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccc-ccccccccc
Q 006107 592 -LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQF-LQLSDFGTH 650 (661)
Q Consensus 592 -~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~-L~~~~~~~~ 650 (661)
+|.+|++|+|++|.+..+| .+ +|.+|++|+|++| .+..+|.++..+.+ |+.++++.+
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCC
Confidence 8888888888888888888 77 8888888888774 57788888877777 776666544
No 144
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.55 E-value=0.00013 Score=80.91 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=34.9
Q ss_pred CCCcceeecCCCCCcccccccc--cccccceeecccccccccCCc-cccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV--SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~~ 650 (661)
.|.+|++|+|++|.++.+|..+ +|.+|++|+|++| .+..+|. .++.+++|+.++++.+
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC
Confidence 6666666666666666666653 6666666666664 4555443 3566666665555433
No 145
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00012 Score=83.57 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=79.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKA 253 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~ 253 (661)
.+++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+...- .....+.. ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~----~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~---------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM---------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC------------
T ss_pred CCccCchHHHHHHHHHHhCCC----CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc----------
Confidence 468999999999999996532 124679999999999999999876311 00001111 111111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChhhhc---c---
Q 006107 254 LLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSDVAS---T--- 327 (661)
Q Consensus 254 il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~v~~---~--- 327 (661)
-....+ .-...... .+......++.+|++|. .. .....+...+. ....++|.||....... .
T Consensus 245 -g~~~~G--~~e~~l~~---~~~~~~~~~~~iLfiD~--~~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 -GTKYRG--EFEDRLKK---VMDEIRQAGNIILFIDA--AI--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp -----------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred -cccccc--hHHHHHHH---HHHHHHhcCCEEEEEcC--ch--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 000000 01112222 22333346778999992 11 12222333332 23456666665544211 0
Q ss_pred -cCCCceeecCCCChHhHHHHHHHhh
Q 006107 328 -MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 328 -~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
......+.+...+.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122568999999999999998654
No 146
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.55 E-value=8e-05 Score=79.55 Aligned_cols=122 Identities=7% Similarity=-0.051 Sum_probs=83.2
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCC--CCCc----hhhHhhHhhhhcCCccc-CcC--CCCcce
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG--PNTS----YLRMEAWSGVFGNISAV-DET--LKKCLQ 597 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~--~~~~----~~~~~~l~~~~~~l~~l-P~~--~L~~Lr 597 (661)
.+..++++.+..+..... ....+.++++|++|.+.++... .+.. ....+.|+.....+..+ |.. +|.+|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 557789999877665432 2355788999999998875431 1111 11223333333445555 554 899999
Q ss_pred eecCCCCCccc-cccc--c-cccccceeecccccccccC-Ccc-ccccccccccccccc
Q 006107 598 FLRPKYTSERE-KKLS--V-SIQNWNMAIWCKHTYLVTG-SVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 598 yL~L~~t~i~~-LP~s--i-~L~~Lq~L~l~~c~~l~~L-P~~-i~~l~~L~~~~~~~~ 650 (661)
+|+|++|.++. +|.. + +|.+|++|++++| .+..+ |.. +.++++|+.++++.+
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence 99999999875 5655 8 9999999999985 57776 555 788888887777554
No 147
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.53 E-value=0.00012 Score=77.91 Aligned_cols=64 Identities=8% Similarity=-0.104 Sum_probs=30.1
Q ss_pred CcccCcC-CCCcceeecCCCCCcccc-cccc-cccccceeecccccccccCCc-ccccccccccccccc
Q 006107 585 ISAVDET-LKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQLSDFGT 649 (661)
Q Consensus 585 l~~lP~~-~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~~~~~~~ 649 (661)
+..+|.. .+.+|++|+|++|.|+.+ |..+ ++.+|++|+++++ .+..+|. .+..+++|+.++++.
T Consensus 197 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTT
T ss_pred CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCC
Confidence 3344444 555555555555555544 3344 5555555555542 3444332 234444444444433
No 148
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.52 E-value=9.4e-05 Score=82.08 Aligned_cols=81 Identities=10% Similarity=0.056 Sum_probs=63.5
Q ss_pred ccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCc-C--CCCcceeecCCCCCccccccc-c-cccccceeecc
Q 006107 550 FYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDE-T--LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWC 624 (661)
Q Consensus 550 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~-~--~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~ 624 (661)
+..+++|++|.+.++ .+..+|. . .+.+|++|+|++|.|+.+|+. + +|.+|++|+|+
T Consensus 71 ~~~l~~L~~L~L~~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 71 LDSFRQVELLNLNDL-------------------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp HHHCCCCSEEECTTS-------------------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred HccCCCCcEEECCCC-------------------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 445667777766543 3344443 2 899999999999999998876 5 99999999999
Q ss_pred cccccccCCccc-cccccccccccccc
Q 006107 625 KHTYLVTGSVNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 625 ~c~~l~~LP~~i-~~l~~L~~~~~~~~ 650 (661)
+| .+..+|.++ +++.+|+.++++.+
T Consensus 132 ~n-~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 132 RN-DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence 85 799999885 88889988777655
No 149
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.51 E-value=0.00019 Score=75.02 Aligned_cols=118 Identities=7% Similarity=-0.088 Sum_probs=76.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+.+.+..+..... ....+..+++|++|.+.++.... +.. ....+.|+.....+..+|.. ++.+|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 4566777665543322 12356778888888887654321 111 11223333333456678875 899999999
Q ss_pred CCCCCcccccc-cc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 601 PKYTSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|++|.+..+|. .+ ++.+|++|+++++ .+..+| ++.+.+|+.++++.+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeecccc
Confidence 99999998866 47 9999999999984 677775 445666665555433
No 150
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.51 E-value=0.00011 Score=78.68 Aligned_cols=114 Identities=13% Similarity=-0.050 Sum_probs=67.9
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcC-CCCcceeecCCCCC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDET-LKKCLQFLRPKYTS 605 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t~ 605 (661)
.++.+.+....... ++.+..+++|++|.+.++........ ...+.|+.....+..+|.. ++.+|++|+|++|.
T Consensus 47 ~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123 (466)
T ss_dssp TCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cccEEecCCCCCcc---CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCC
Confidence 46666665544332 34456677777777765432111100 0111111111233344444 78888888888888
Q ss_pred cccccccc-cccccceeecccccccccCCcccccccccccccccc
Q 006107 606 EREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 606 i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~ 649 (661)
++.+|. + +|.+|++|++++| .+..+| .+..+.+|+.++++.
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN 165 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE
T ss_pred CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC
Confidence 888876 8 8888888888875 577776 377777777666643
No 151
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.50 E-value=0.00016 Score=77.14 Aligned_cols=66 Identities=11% Similarity=-0.099 Sum_probs=32.7
Q ss_pred CCcccCcC-CCCcceeecCCCCCcccc-cccc-cccccceeecccccccccC-Cccccccccccccccccc
Q 006107 584 NISAVDET-LKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~-~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
.+..+|.. .+.+|++|+|++|.++.+ |.++ ++.+|++|+++++ .+..+ |..+..+.+|+.++++.+
T Consensus 207 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC
Confidence 33444544 555556666665555554 3344 5555555555553 34433 233444555554444433
No 152
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.49 E-value=8.2e-05 Score=73.34 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|.+..++.+.+.+..-. .....+-+.|+|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 568999988888877664200 00112237799999999999999998864
No 153
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00073 Score=70.46 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcC---------CCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTS---------SDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++.|-++.+++|.+.+... -+-..++-|.++||+|+|||+||+.+++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789998888887765320 012345678899999999999999999864
No 154
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.49 E-value=0.00014 Score=81.18 Aligned_cols=113 Identities=9% Similarity=-0.003 Sum_probs=75.4
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.++|.+..+...... ...|.++++|++|.+.++.... +.. ....+.|+.....+..+|.. +|.+|++|+
T Consensus 76 ~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 35677777665544321 2347788889999887754321 111 11223333333456677765 999999999
Q ss_pred CCCCCccc--ccccc-cccccceeecccccccccCCc-ccccccccc
Q 006107 601 PKYTSERE--KKLSV-SIQNWNMAIWCKHTYLVTGSV-NLNFTQFLQ 643 (661)
Q Consensus 601 L~~t~i~~--LP~si-~L~~Lq~L~l~~c~~l~~LP~-~i~~l~~L~ 643 (661)
|++|.++. +|..+ .|.+|++|+++++ .+..+|. ++..+++++
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCT
T ss_pred cccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhh
Confidence 99999875 57888 9999999999984 6777754 566666554
No 155
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.48 E-value=5.7e-05 Score=67.05 Aligned_cols=86 Identities=16% Similarity=0.062 Sum_probs=50.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDGK 282 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 282 (661)
..+.|+|++|+|||||++.+++..... .+ ..++++...-... ..+ .+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~-~~~~~~~~~~~~~-----------------------------~~~-~~ 83 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA--GK-NAAYIDAASMPLT-----------------------------DAA-FE 83 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT--TC-CEEEEETTTSCCC-----------------------------GGG-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc--CC-cEEEEcHHHhhHH-----------------------------HHH-hC
Confidence 478999999999999999998865422 12 2456654432111 111 24
Q ss_pred eEEEEEeCCCCCChhhHhhhhccccc-CCCCc-EEEEEeCC
Q 006107 283 RFLLVLDDVRNEDYSLWVDLKAPFLA-AAPNS-KMIITTRH 321 (661)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTTr~ 321 (661)
.-+|||||+.......-+.+...+.. ...|. .+|+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 45889999987653332233332221 11233 48888874
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.44 E-value=0.00014 Score=74.66 Aligned_cols=84 Identities=11% Similarity=-0.169 Sum_probs=61.3
Q ss_pred ccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCCCCCcccccc-cc-cccccceee
Q 006107 548 EVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKL-SV-SIQNWNMAI 622 (661)
Q Consensus 548 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~-si-~L~~Lq~L~ 622 (661)
+.+..+++|+.|.+.+. ..+..+|.. .|.+|++|+|++|.|+.+|+ .+ +|.+|++|+
T Consensus 25 p~l~~~~~L~~L~l~~~------------------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQ------------------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp TTSCSCSCCSEEECCSC------------------SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCCCCCeeEEEccCC------------------CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 33777888999988641 233445543 88999999999999998877 46 899999999
Q ss_pred cccccccccCCccccccccccccccccc
Q 006107 623 WCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 623 l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|++ +.|..+|.++.....|+.+++..+
T Consensus 87 l~~-N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 87 LSF-NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CCC-CccceeCHHHcccCCceEEEeeCC
Confidence 987 689999987644333665555443
No 157
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=0.0003 Score=80.20 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred CccccchhhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|.+..++.+...+.... .......+.++|++|+|||++|+.+.+.... .-...+.++++.-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~---- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEK---- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSS----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhcccc----
Confidence 458999999988888876421 1123346899999999999999999876421 1223445554432110
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccC-----------CCCcEEEEEeC
Q 006107 252 KALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAA-----------APNSKMIITTR 320 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTr 320 (661)
.. .....+...++. ...-+|+||+++.........+...+..+ ..+.+||+||.
T Consensus 564 ----------~~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ----------HS--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------CC--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------cc--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 001111112221 22348999999988776666666555431 23568888887
Q ss_pred Chh-----h----hccc-----CC-CceeecCCCChHhHHHHHHHhh
Q 006107 321 HSD-----V----ASTM-----GP-IEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 321 ~~~-----v----~~~~-----~~-~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
... + ...+ .. ...+.+.+++.++..+++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 311 0 0101 11 2467788888888777766543
No 158
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.00017 Score=82.81 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=48.2
Q ss_pred cCCcccCcC----CCCcceeecCCCCCcccccccc-cccccceeeccc------ccccccCCccccccccccccccccc
Q 006107 583 GNISAVDET----LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCK------HTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 583 ~~l~~lP~~----~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~------c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
..+..+|.. .+.+|++|+|++|.+..+|.++ +|.+|++|+|++ |.-...+|..+.++++|+.++++.+
T Consensus 738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 445566665 4778888888888877788888 888888888765 3335567777777777777666554
No 159
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.42 E-value=0.00024 Score=72.37 Aligned_cols=121 Identities=9% Similarity=-0.032 Sum_probs=74.9
Q ss_pred cCCcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcCCCCcceeecC
Q 006107 527 RFERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDETLKKCLQFLRP 601 (661)
Q Consensus 527 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~~L~~LryL~L 601 (661)
.+...+.+.+..+...... ...+.++++|++|.+.++.... +.. ....+.|+.....+..+|..-..+|++|+|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l 130 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI 130 (332)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEEC
T ss_pred CCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEEC
Confidence 4457788888766544321 2357788899999887654311 111 111223333234455677663378888888
Q ss_pred CCCCccccccc-c-cccccceeecccccccc---cCCccccccccccccccccc
Q 006107 602 KYTSEREKKLS-V-SIQNWNMAIWCKHTYLV---TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 602 ~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~---~LP~~i~~l~~L~~~~~~~~ 650 (661)
++|.++.+|.. + ++.+|++|+++++ .+. ..|..+..+ +|+.++++.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCC
Confidence 88888888875 5 8888888888874 454 445556655 6665555444
No 160
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0011 Score=68.37 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=94.1
Q ss_pred CccccchhhHHHHHHHHhc----C-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNT----S-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~----~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++-|-++.+++|.+.+.- . .+-..++-|.++||+|.|||.||+.+++.... ..+.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~------~fi~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA------TFLRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC------EEEEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC------CEEEEEHHHh---
Confidence 4577888888887776532 1 01234567889999999999999999986432 1223332211
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHH-HHhhcCCceEEEEEeCCCCCCh--------------hhHhhhhccccc--CC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQ-LKKAVDGKRFLLVLDDVRNEDY--------------SLWVDLKAPFLA--AA 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 310 (661)
.... ....+...+. +...-...+++|++|+++.... .....++..+.. ..
T Consensus 253 -----------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 -----------IQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -----------CCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------hhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 1100 0111112222 2222235689999999875310 112223322221 23
Q ss_pred CCcEEEEEeCChhhhc-cc-C--C-CceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVAS-TM-G--P-IEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~-~~-~--~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||....... .+ . . ...+++..-+.++-.++|..+.-.-. ...... ...|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 3445666776543322 11 1 1 24577888888888888877653221 111112 256777787764
No 161
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.42 E-value=0.00018 Score=80.40 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=70.3
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCC-CCCchh-----------hHhhHhhhhcCCcccCcC----CC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG-PNTSYL-----------RMEAWSGVFGNISAVDET----LK 593 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~-~~~~~~-----------~~~~l~~~~~~l~~lP~~----~L 593 (661)
+.+++.+..+..... ....+..+++|+.|.+.++... .+.... ..+.|+.....+..+|.. .+
T Consensus 434 ~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 345555544443321 0111334667777776654331 111110 223333333445567765 57
Q ss_pred CcceeecCCCCCcccccccc-cccccceeeccc------ccccccCCccccccccccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCK------HTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~------c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+|++|+|++|.++.+|.++ ++.+|++|++++ +.-...+|..++.+++|+.++++.+
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 78888888888888888888 888888888843 3335577888888888877777555
No 162
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.40 E-value=9.2e-06 Score=76.20 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=46.8
Q ss_pred CCcccCcC--CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCc--cccccccccccccccc
Q 006107 584 NISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSV--NLNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~--~i~~l~~L~~~~~~~~ 650 (661)
.+..+|.. .+.+|++|+|++|.++.+| .+ ++.+|++|++++| .+..+|. .+..+++|+.++++.+
T Consensus 81 ~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 81 LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 33456665 6678888888888888877 67 8888888888774 5777665 5677777777666554
No 163
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.40 E-value=0.00013 Score=73.52 Aligned_cols=55 Identities=16% Similarity=-0.029 Sum_probs=30.6
Q ss_pred CCCcceeecCCCCCcccc-cccc-cc---cccceeecccccccccCCcccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREK-KLSV-SI---QNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~L-P~si-~L---~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~ 649 (661)
.+.+|++|+|++|.+..+ |+.+ .+ .+|++|++++ ..+..+|..+. ++|+.++++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC
Confidence 445666666666665554 5555 54 4666666655 34566666553 4444444433
No 164
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.40 E-value=0.00038 Score=67.10 Aligned_cols=67 Identities=9% Similarity=-0.073 Sum_probs=41.7
Q ss_pred CCcccCcC---CCCcce-eecCCCCCcccccccc-cccccceeecccccccccCCcc-cccc-ccccccccccc
Q 006107 584 NISAVDET---LKKCLQ-FLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFT-QFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~---~L~~Lr-yL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l-~~L~~~~~~~~ 650 (661)
.+..+|.. .+.+|+ +|+|+++.++.+|..+ ...+|++|++++|..+..+|.. +..+ .+|+.++++.+
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 44455553 666777 7777777777777766 5567777777664346666543 4555 66665555444
No 165
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.39 E-value=0.00014 Score=81.21 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=79.3
Q ss_pred CcceEEEeeeCCCccc----------------ccccccc--CCCCceEEeeccccC--CCCCch---hhHhhHhhhhcC-
Q 006107 529 ERVRHSSYGRGWLDGK----------------NKFEVFY--EIELLRTFLPFCIRG--GPNTSY---LRMEAWSGVFGN- 584 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~----------------~~~~~~~--~~~~LrsL~~~~~~~--~~~~~~---~~~~~l~~~~~~- 584 (661)
.+.+.+.+..+..... ..+..+. ++++|++|.+.++.. ..|... ...+.|+.....
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 4677888777654431 0245566 899999999887642 222211 122233322222
Q ss_pred Cc--ccCcC--CC------CcceeecCCCCCcccccc--cc-cccccceeecccccccc-cCCccccccccccccccccc
Q 006107 585 IS--AVDET--LK------KCLQFLRPKYTSEREKKL--SV-SIQNWNMAIWCKHTYLV-TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 585 l~--~lP~~--~L------~~LryL~L~~t~i~~LP~--si-~L~~Lq~L~l~~c~~l~-~LP~~i~~l~~L~~~~~~~~ 650 (661)
+. .+|.. +| .+|++|+|++|.++.+|. ++ +|.+|++|++++| .+. .+| .++.+++|+.++++.+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCEEECCCC
Confidence 43 36665 54 888888888888888888 88 8888888888874 577 888 8888888887776554
No 166
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00057 Score=71.31 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhc----C-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNT----S-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~----~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|-++.+++|.+.+.. + .+-..++-|.++||+|+|||.||+.+++.... ..+.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~l--- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQL--- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhhh---
Confidence 4678999888888776422 1 01234567889999999999999999986432 2233333221
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHH-HhhcCCceEEEEEeCCCCC-----C-h----h----hHhhhhccccc--CC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQL-KKAVDGKRFLLVLDDVRNE-----D-Y----S----LWVDLKAPFLA--AA 310 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~-----~-~----~----~~~~l~~~l~~--~~ 310 (661)
.... ....+...+.+ ...-...+++|++|+++.. + . . ....++..+.. ..
T Consensus 252 -----------~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 252 -----------VQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp -----------CSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred -----------hhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 1000 01111111111 1122346899999998631 0 0 0 11223333322 22
Q ss_pred CCcEEEEEeCChhhhc-cc-C---CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 311 PNSKMIITTRHSDVAS-TM-G---PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 311 ~gs~ilvTTr~~~v~~-~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
.+..||.||....... .+ . -...+++...+.++-.++|..+.-.-... ..-. ...|++.|.|.-
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDIN----WQELARSTDEFN 387 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCC----HHHHHHHCSSCC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCC----HHHHHHhCCCCC
Confidence 3445666776543322 11 1 12568888888888888887665321111 1111 256778888763
No 167
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00045 Score=70.28 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=84.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.++|++..++.+...+.... -+.++|++|+|||+||+.+.+... . . ...+.........++....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~------~vll~G~pGtGKT~la~~la~~~~--~-~---~~~i~~~~~~~~~~l~g~~--- 92 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG------HILLEGVPGLAKTLSVNTLAKTMD--L-D---FHRIQFTPDLLPSDLIGTM--- 92 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC------CEEEESCCCHHHHHHHHHHHHHTT--C-C---EEEEECCTTCCHHHHHEEE---
T ss_pred ceeCcHHHHHHHHHHHHcCC------eEEEECCCCCcHHHHHHHHHHHhC--C-C---eEEEecCCCCChhhcCCce---
Confidence 57899999998888876532 477999999999999999987532 1 1 2234444333333322111
Q ss_pred hccCCCCCCCHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhHhhhhccccc-----------CCCCcEEEEEeCChhh
Q 006107 258 ITSAASDLNTLNEVQVQLKKAVDG--KRFLLVLDDVRNEDYSLWVDLKAPFLA-----------AAPNSKMIITTRHSDV 324 (661)
Q Consensus 258 l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTTr~~~v 324 (661)
.... ..... ....+ ...++++|+++.........+...+.. ......++.|+.....
T Consensus 93 -~~~~-~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 93 -IYNQ-HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp -EEET-TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred -eecC-CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 0000 00000 00000 125899999988765555544443321 1234455555552210
Q ss_pred h-------cccCCCc-eeecCCCChHhHHHHHHHhhc
Q 006107 325 A-------STMGPIE-HYNLKSLLDDDCWSIFIKHAL 353 (661)
Q Consensus 325 ~-------~~~~~~~-~~~l~~L~~~e~~~Lf~~~~~ 353 (661)
. ....... .+.+.+.+.++-.+++.+...
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 0 0111222 478888899988888887763
No 168
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.36 E-value=0.00021 Score=70.64 Aligned_cols=41 Identities=10% Similarity=-0.105 Sum_probs=25.3
Q ss_pred CCCcceeecCCCCCccc--ccccc-cccccceeecccccccccCC
Q 006107 592 LKKCLQFLRPKYTSERE--KKLSV-SIQNWNMAIWCKHTYLVTGS 633 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~--LP~si-~L~~Lq~L~l~~c~~l~~LP 633 (661)
.+.+|++|+|++|.++. +|..+ ++.+|++|++++| .+..+|
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~ 165 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCC
Confidence 66666666666666655 56666 6666666666653 455444
No 169
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.35 E-value=0.00035 Score=74.45 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=74.8
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCc-C--CCCcceeecC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDE-T--LKKCLQFLRP 601 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~-~--~L~~LryL~L 601 (661)
..+.+.+..+..... ....+..+++|+.|.+.++.... +.. ....+.|+.....+..++. . .+.+|++|+|
T Consensus 276 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 456666655443321 12345667777777776543211 100 1111222222233445533 3 7899999999
Q ss_pred CCCCcccc-cccc-cccccceeecccccccccCCccc-cccccccccccccc
Q 006107 602 KYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 602 ~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~~ 650 (661)
++|.++.+ |..+ .+.+|++|++++ ..+..+|.++ ..+++|+.++++.+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCC
Confidence 99998887 6678 999999999988 4788888764 78888887777655
No 170
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.35 E-value=0.00014 Score=73.45 Aligned_cols=56 Identities=7% Similarity=-0.048 Sum_probs=34.5
Q ss_pred CCCcceeecCCCCCcccccccccccccceeecccccccccCCccccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.|+.+|..+. .+|++|++++ ..+..+|. +..+++|+.+++..+
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 45666666666666666666554 5666666665 35666655 666666665555444
No 171
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.34 E-value=0.00019 Score=79.03 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=75.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-C-Cc---hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-N-TS---YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~-~~---~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+++.+..+..... ....+.++++||+|.+.++.... + .. ....+.|+.....+..+|.. +|.+|++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 4567777766544332 12346778889999887654311 1 11 11223344333456677763 999999999
Q ss_pred CCCCCccc--ccccc-cccccceeecccccccccCC-ccccccccc
Q 006107 601 PKYTSERE--KKLSV-SIQNWNMAIWCKHTYLVTGS-VNLNFTQFL 642 (661)
Q Consensus 601 L~~t~i~~--LP~si-~L~~Lq~L~l~~c~~l~~LP-~~i~~l~~L 642 (661)
|++|.++. +|.++ +|.+|++|++++| .+..+| ..++.+++|
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhcc
Confidence 99999886 79999 9999999999985 577665 457777776
No 172
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.32 E-value=0.00033 Score=74.79 Aligned_cols=114 Identities=9% Similarity=-0.023 Sum_probs=71.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc-hhhHhhHhhhhcCCcccCcCCCCcceeecCCCCCc
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS-YLRMEAWSGVFGNISAVDETLKKCLQFLRPKYTSE 606 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~-~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~i 606 (661)
...+++.+..+.... .+.+..+++|++|.+.++.... +.. ....+.|+.....+..+|-..+.+|++|+|++|.+
T Consensus 42 ~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp TTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCCccc---ChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence 456666666554433 2456677788888776654311 111 11112222222334455422888899999999888
Q ss_pred ccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 607 REKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 607 ~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+.+| + ++.+|++|++++| .+..+| ++.+++|+.++++.+
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTC
T ss_pred Ceec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCC
Confidence 8886 8 8999999999874 677775 777777777666554
No 173
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.31 E-value=0.00017 Score=79.00 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=80.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcc--cCcC--CCCcceee
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISA--VDET--LKKCLQFL 599 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~--lP~~--~L~~LryL 599 (661)
.+.+++.+..+..... ....+..+++|++|.+.++.... +.. ....+.|+.....+.. +|.. ++.+|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 4567777766554432 12456778888888887654321 111 0112223322334443 3444 99999999
Q ss_pred cCCCCC-cccccc-cc-cccccceeecccccccccCCcccccccccccccccccc
Q 006107 600 RPKYTS-EREKKL-SV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTHI 651 (661)
Q Consensus 600 ~L~~t~-i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~~ 651 (661)
+|++|. +..+|. .+ ++.+|++|++++|.--...|..++.+++|+.+++..+.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999998 888985 78 99999999999864333478889999999877775543
No 174
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.31 E-value=0.00014 Score=69.26 Aligned_cols=96 Identities=4% Similarity=-0.096 Sum_probs=68.2
Q ss_pred CCceEEeeccccCCC--CCc----hhhHhhHhhhhcCCcccCcC---CCCcceeecCCCCCccccccc-c-cccccceee
Q 006107 554 ELLRTFLPFCIRGGP--NTS----YLRMEAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAI 622 (661)
Q Consensus 554 ~~LrsL~~~~~~~~~--~~~----~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~ 622 (661)
+.++.|.+.++.... +.. ....+.|+.....+..+|.. .+.+|++|+|++|.|+.+|.. + .|.+|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 456788777654321 111 11223333333456677764 999999999999999998886 6 999999999
Q ss_pred cccccccccC-Cccccccccccccccccc
Q 006107 623 WCKHTYLVTG-SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 623 l~~c~~l~~L-P~~i~~l~~L~~~~~~~~ 650 (661)
|++ +.+..+ |..+..+.+|+.++++.+
T Consensus 112 Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 112 LRS-NRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CTT-SCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CCC-CcCCeECHhHcCCCccCCEEECCCC
Confidence 998 568877 567888999988887665
No 175
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.28 E-value=0.0011 Score=70.92 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 178 EVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++|++..++.+...+.... -|.|+|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~------~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE------SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC------EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC------eeEeecCchHHHHHHHHHHHHHH
Confidence 47899999988888776542 57899999999999999998764
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.0033 Score=70.74 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhc----C-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNT----S-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~----~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|-++.+++|.+++.- + -.-..++-|.++|++|+|||+||+.+++.... ..+.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~------~~~~v~~~----- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGP----- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC------EEEEEEHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------eEEEEEhH-----
Confidence 4578888888888776532 1 11234567899999999999999999987432 22334321
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhccccc--CCCCcE
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLA--AAPNSK 314 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ 314 (661)
++ .... .......+...+.......+.+|+||+++..-. .....++..+.. ...+..
T Consensus 273 -~l--------~sk~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -EI--------MSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -HH--------HSSC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -Hh--------hccc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 1111 011112233334444567789999999975321 011222222221 122344
Q ss_pred EEEEeCChh-hhcccC----CCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCChH
Q 006107 315 MIITTRHSD-VASTMG----PIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLPL 380 (661)
Q Consensus 315 ilvTTr~~~-v~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 380 (661)
||.||.... +-..+. -...+++...+.++-.++|..+...... ..... ...|++++.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCCH
Confidence 555555432 222221 2256888888888888888876522111 11111 3568888888753
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.0014 Score=62.10 Aligned_cols=85 Identities=27% Similarity=0.260 Sum_probs=52.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc-----------cCC-CCCCCHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT-----------SAA-SDLNTLNE 270 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~-----------~~~-~~~~~~~~ 270 (661)
.++.|+|++|+|||||+..+.. . .-..++|++....++...+.. +....+ ... ........
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 4899999999999999999987 1 224778888777556654433 322221 111 11112223
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCC
Q 006107 271 VQVQLKKAVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 271 l~~~l~~~l~~kr~LlVlDdv~~~ 294 (661)
....++..+..+.-+||+|.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 344444555445779999998754
No 178
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.24 E-value=0.00029 Score=78.21 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=72.3
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcccCcC---CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISAVDET---LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~lP~~---~L~~LryL~ 600 (661)
.+.+++.+..+..... ....+.++++||+|.+.++.... +.. ....+.|+.....+..+|.. ++.+|++|+
T Consensus 56 ~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 56 SELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred ccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 4567777765544332 12346778888888887654321 111 11223333333455566643 899999999
Q ss_pred CCCCCcc--cccccc-cccccceeecccccccccCC-cccccccccc
Q 006107 601 PKYTSER--EKKLSV-SIQNWNMAIWCKHTYLVTGS-VNLNFTQFLQ 643 (661)
Q Consensus 601 L~~t~i~--~LP~si-~L~~Lq~L~l~~c~~l~~LP-~~i~~l~~L~ 643 (661)
|++|.+. .+|..+ +|.+|++|++++| .+..+| ..++.+++|+
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENP 180 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCT
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccc
Confidence 9999987 488999 9999999999885 566664 4466666554
No 179
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00047 Score=78.68 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=72.3
Q ss_pred CccccchhhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNIL 251 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 251 (661)
..++|.+..++.+...+.... .......+.++|++|+|||++|+.+.+... ...+.++.+.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh--
Confidence 347899998888887775321 122345789999999999999999987531 2334455443211000
Q ss_pred HHHHHHhccCCCCCCCH---HHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEE
Q 006107 252 KALLESITSAASDLNTL---NEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMII 317 (661)
Q Consensus 252 ~~il~~l~~~~~~~~~~---~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilv 317 (661)
...+.+..+..... ..+...++. ....+|+||+++.......+.+...+..+. .+..||.
T Consensus 530 ---~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp ---CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred ---HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 00011111100000 111222222 345799999999887666666665554221 2345777
Q ss_pred EeCC
Q 006107 318 TTRH 321 (661)
Q Consensus 318 TTr~ 321 (661)
||..
T Consensus 604 tsN~ 607 (758)
T 1r6b_X 604 TTNA 607 (758)
T ss_dssp EECS
T ss_pred ecCc
Confidence 7764
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=0.0011 Score=72.17 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred CccccchhhHHHHHHHHhcC--CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHH
Q 006107 177 HEVFGREEDKAKILDMVNTS--SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKAL 254 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 254 (661)
.+++|-+.-...+.+.+.-. .......++.|+|++|+||||||+.+...... ...-++++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~------~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR------KFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC------EEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC------CeEEEEecccchhhhhhhHH
Confidence 45788887777765543210 11113458999999999999999999875321 12223333322222211111
Q ss_pred HHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChh----hHhhhhcccccCC---------------CCcEE
Q 006107 255 LESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYS----LWVDLKAPFLAAA---------------PNSKM 315 (661)
Q Consensus 255 l~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~i 315 (661)
...++. ........+........ +++||+++..... ....++..+.... ....+
T Consensus 155 ~~~ig~------~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGA------MPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhcc------CchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 00111222333222333 8889999876432 1233333332111 23456
Q ss_pred EEEeCChhhhc--ccCCCceeecCCCChHhHHHHHHHhh
Q 006107 316 IITTRHSDVAS--TMGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 316 lvTTr~~~v~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
|.||....... .......+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66665432111 01112468899999998888887764
No 181
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.20 E-value=0.00029 Score=72.76 Aligned_cols=102 Identities=7% Similarity=-0.062 Sum_probs=71.4
Q ss_pred CCceEEeeccccCCC-CC-----chhhHhhHhhhhcCCcccCcC---CCCcceeecCCCCCccccccc-c-cccccceee
Q 006107 554 ELLRTFLPFCIRGGP-NT-----SYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAI 622 (661)
Q Consensus 554 ~~LrsL~~~~~~~~~-~~-----~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~ 622 (661)
+.++.|.+.++.... +. .....+.|+.....+..+|.. .|.+|++|+|++|.|+.+|.. + .|.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 457888887654311 11 112233344334556677754 899999999999999999885 5 999999999
Q ss_pred cccccccccC-Cccccccccccccccccccccccc
Q 006107 623 WCKHTYLVTG-SVNLNFTQFLQLSDFGTHIGARKS 656 (661)
Q Consensus 623 l~~c~~l~~L-P~~i~~l~~L~~~~~~~~~~~~~~ 656 (661)
|++ +.+..+ |..+..+.+|+.++++.+--+..+
T Consensus 119 L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 119 LYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCC-CcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 998 467777 556888999988888666443333
No 182
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.18 E-value=0.00046 Score=79.86 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=76.4
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC--CCc---hhhHhhHhhhhcCCcc-cCcC----CCCccee
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP--NTS---YLRMEAWSGVFGNISA-VDET----LKKCLQF 598 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~--~~~---~~~~~~l~~~~~~l~~-lP~~----~L~~Lry 598 (661)
...+.|.+..+..........+.++++|++|.+.++.... +.. ....+.|+.....+.. +|.. +|.+|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 4567777765532221123457788999999887654311 111 1122333332333433 4442 8999999
Q ss_pred ecCCCCCccccc--ccc-cccccceeeccccccccc-CCcccccc--ccccccccccc
Q 006107 599 LRPKYTSEREKK--LSV-SIQNWNMAIWCKHTYLVT-GSVNLNFT--QFLQLSDFGTH 650 (661)
Q Consensus 599 L~L~~t~i~~LP--~si-~L~~Lq~L~l~~c~~l~~-LP~~i~~l--~~L~~~~~~~~ 650 (661)
|+|++|.+..++ ..+ +|.+|++|+++++ .+.. .|..+..+ ++|+.++++.+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEECCCC
Confidence 999999988874 578 9999999999985 4544 56677666 66766666443
No 183
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.17 E-value=0.00058 Score=75.03 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=49.1
Q ss_pred CcceeecCCCCCcccccccc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
.+|++|+|++|.|+.+|..+ .+.+|++|++++ ..+..+|.. +..+++|+.++++.+
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCC
Confidence 68999999999999999999 999999999998 579999998 888888887776554
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.16 E-value=0.00034 Score=71.68 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=59.2
Q ss_pred CCcccCcC-CCCcceeecCCC-CCcccccc-cc-cccccceeecccccccccCCcc-cccccccccccccccccccccc
Q 006107 584 NISAVDET-LKKCLQFLRPKY-TSEREKKL-SV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTHIGARKSK 657 (661)
Q Consensus 584 ~l~~lP~~-~L~~LryL~L~~-t~i~~LP~-si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~~~~~~~~ 657 (661)
.+..+|.. .+.+|++|+|++ +.|..+|. .+ .|.+|++|+|++ +.|..+|.+ +.+|++|+.++++.|--+..+.
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 45567776 888999999996 89999995 57 999999999998 579998875 6899999988887774444333
No 185
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.16 E-value=0.00059 Score=78.07 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=76.8
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCC--CCCchh---hHhhHhhhhcCCc-ccCcC--CCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG--PNTSYL---RMEAWSGVFGNIS-AVDET--LKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~--~~~~~~---~~~~l~~~~~~l~-~lP~~--~L~~LryL~ 600 (661)
.+.+.+.+..+..... .+..+..+++|+.|.+.++... .+.... ..+.|+.....+. .+|.. ++.+|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCc-ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 3456666655443321 2345667788888887765432 111111 1122222222333 46666 888899999
Q ss_pred CCCCCcc-cccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 601 PKYTSER-EKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
|++|.+. .+|..+ ++.+|++|++++|.-...+|..++.+++|+.++++.+
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 9998876 788888 9999999999886544478888888888887776554
No 186
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.15 E-value=0.00044 Score=75.64 Aligned_cols=111 Identities=11% Similarity=-0.103 Sum_probs=57.2
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCC-CCCchhhHhhHhhhhcCCcccCcCCCCcceeecCCCCCccc
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG-PNTSYLRMEAWSGVFGNISAVDETLKKCLQFLRPKYTSERE 608 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~-~~~~~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~i~~ 608 (661)
+.++|.+..+.... ++. .+++|+.|.+.++... .+......+.|+.....+..+|. -..+|++|+|++|.|+.
T Consensus 121 ~L~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM---LPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLES 194 (571)
T ss_dssp TCCEEECCSSCCSC---CCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCC---CCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCc
Confidence 45555555444332 222 4556666666554321 11111111222222223334444 12567777777777777
Q ss_pred ccccc-ccccc-------ceeecccccccccCCccccccccccccccccc
Q 006107 609 KKLSV-SIQNW-------NMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 609 LP~si-~L~~L-------q~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+|. + + +| ++|+|++ +.+..+|.++.++++|+.++++.|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred hhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 777 6 5 55 7777776 467777777777777776666544
No 187
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.15 E-value=0.00055 Score=75.78 Aligned_cols=55 Identities=9% Similarity=-0.140 Sum_probs=28.4
Q ss_pred CCCcceeecCCCCCcccccccccccccceeecccccccccCCcccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~ 649 (661)
.+.+|++|+|++|.|+.+|. .+.+|++|+|++| .+..+|..+.++++|+.++++.
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence 34455555555555555555 3444555555553 4555555555555555444433
No 188
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.14 E-value=0.00054 Score=73.36 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=76.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCc---hhhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTS---YLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~---~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.+++.+..+.... ++.+.++++|+.|.+.++....... ....+.|+.....+..+|.. ++.+|++|+|++|
T Consensus 68 ~~L~~L~Ls~n~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 68 NNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144 (466)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred cCCCEEECCCCccCC---chhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCC
Confidence 456777776655443 2236777888888877654321111 11122233223345566656 9999999999999
Q ss_pred Ccccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+..+|. + ++.+|++|++++ .+..+|. +.++++|+.++++.+
T Consensus 145 ~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 145 TISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSN 187 (466)
T ss_dssp EECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcCC
Confidence 9999885 8 999999999964 4666664 888888887777654
No 189
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.14 E-value=0.00052 Score=70.21 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=70.7
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCc---hhhHhhHhhhhcCCcccCcC-CCCcceeecCCCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTS---YLRMEAWSGVFGNISAVDET-LKKCLQFLRPKYT 604 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~---~~~~~~l~~~~~~l~~lP~~-~L~~LryL~L~~t 604 (661)
.+.+.+.+..+.... .+.+..+++|++|.+.++....... ....+.|+.....+..+|.. .+.+|++|+|++|
T Consensus 221 ~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CcCCEEEccCCccCC---CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCC
Confidence 345566665544332 2235566777777766543211110 01111222222334455555 7888999999998
Q ss_pred Cccccc-ccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 605 SEREKK-LSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 605 ~i~~LP-~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+...+ ..+ ++.+|++|++++| .+..+|. +..+.+|+.++++.+
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC
T ss_pred cCCCcChhHhhccccCCEEEccCC-ccccccC-hhhhhccceeehhhh
Confidence 877544 556 8999999999886 4777776 777888887777655
No 190
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.14 E-value=0.0009 Score=67.96 Aligned_cols=44 Identities=5% Similarity=-0.071 Sum_probs=23.0
Q ss_pred CCCcceeecCCCCCcc---cccccc-cccccceeecccccccccCCccc
Q 006107 592 LKKCLQFLRPKYTSER---EKKLSV-SIQNWNMAIWCKHTYLVTGSVNL 636 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~---~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i 636 (661)
.+.+|++|+|+++.+. ..|..+ ++.+|++|++++| .+..+|..+
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~ 190 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccc
Confidence 4555555555555543 234445 5555555555552 455555544
No 191
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.10 E-value=0.00029 Score=71.02 Aligned_cols=120 Identities=11% Similarity=-0.056 Sum_probs=65.9
Q ss_pred CcceEEEeeeCCCccccccccc--cCCCCceEEeeccccCCCCCchh---------hHhhHhhhhcCCcccCc-C--CCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVF--YEIELLRTFLPFCIRGGPNTSYL---------RMEAWSGVFGNISAVDE-T--LKK 594 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~--~~~~~LrsL~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~lP~-~--~L~ 594 (661)
.+.+++.+..+...... +..+ ..+++|+.|.+.++........+ ..+.|+.....+..+|. . .+.
T Consensus 95 ~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchh-HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 45677777666544221 2222 67788888888765432111111 11112222233445553 3 788
Q ss_pred cceeecCCCCCccc---cccc--c-cccccceeecccccccccCC---ccc-cccccccccccccc
Q 006107 595 CLQFLRPKYTSERE---KKLS--V-SIQNWNMAIWCKHTYLVTGS---VNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 595 ~LryL~L~~t~i~~---LP~s--i-~L~~Lq~L~l~~c~~l~~LP---~~i-~~l~~L~~~~~~~~ 650 (661)
+|++|+|++|.+.. +|.+ + ++.+|++|++++| .+..+| ..+ ..+++|+.++++.+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 88888888887433 3433 3 7788888888874 566443 232 34566666665444
No 192
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.09 E-value=3.1e-05 Score=72.51 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=49.3
Q ss_pred CCcccCcC-CCCcceeecCCCCCcccccccc-cccccceeecccccccccCCccccccccccccccccc
Q 006107 584 NISAVDET-LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 584 ~l~~lP~~-~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+..+|.. .+.+|++|+|++|.++.+|..+ .+.+|++|++++| .+..+| .+..+++|+.++++.+
T Consensus 59 ~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 59 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE
T ss_pred CCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC
Confidence 34456633 7888888888888888888888 8888888888874 678877 5777777777766554
No 193
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.07 E-value=0.0008 Score=69.03 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=40.9
Q ss_pred cCCcccCcC--CCCcceeecCCC-CCcccccccc--cccccceeecccccccccCCcc-cccccccccccc
Q 006107 583 GNISAVDET--LKKCLQFLRPKY-TSEREKKLSV--SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDF 647 (661)
Q Consensus 583 ~~l~~lP~~--~L~~LryL~L~~-t~i~~LP~si--~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~ 647 (661)
..++.+|.. ...+|+.|++++ +.++.+|..+ .|.+|++||+++ +.|+.+|.+ +.+|++|+.+++
T Consensus 164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEECTTC
T ss_pred ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhhccchHhhhccC
Confidence 345566665 556677777764 4477777653 677777777776 467777764 456666665544
No 194
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.06 E-value=0.00051 Score=78.57 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=46.4
Q ss_pred ccCcC--CCCcceeecCCCCCcc-cccccc-cccccceeecccccccc-cCCccccccccccccccccc
Q 006107 587 AVDET--LKKCLQFLRPKYTSER-EKKLSV-SIQNWNMAIWCKHTYLV-TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 587 ~lP~~--~L~~LryL~L~~t~i~-~LP~si-~L~~Lq~L~l~~c~~l~-~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+|.. +|..|++|+|++|.+. .+|.++ +|.+|++|||+++ .+. .+|..+..|++|+.++++.+
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSS
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCC
Confidence 45555 7778888888888866 688888 8888888888775 344 77777887777777666554
No 195
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.001 Score=72.22 Aligned_cols=121 Identities=9% Similarity=-0.062 Sum_probs=77.7
Q ss_pred CcceEEEeeeCCCccccc-cccccCCCCceEEeeccccCCC--CCc----hhhHhhHhhhhcCC-cccCcCCCCcceeec
Q 006107 529 ERVRHSSYGRGWLDGKNK-FEVFYEIELLRTFLPFCIRGGP--NTS----YLRMEAWSGVFGNI-SAVDETLKKCLQFLR 600 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~-~~~~~~~~~LrsL~~~~~~~~~--~~~----~~~~~~l~~~~~~l-~~lP~~~L~~LryL~ 600 (661)
.+.+.+.+..+....... +..+..+++|++|.+.++.... +.. ....+.|+.....+ ..+|..-..+|++|+
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~ 427 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEE
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEE
Confidence 356667776655443111 1236678888888887654321 110 00111111111111 122332116899999
Q ss_pred CCCCCcccccccc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 601 PKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 601 L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
|++|.|+.+|..+ .+.+|++|++++| .+..+|.. +..+++|+.++++.+
T Consensus 428 Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 428 LHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 9999999999999 9999999999985 79999998 888888887777655
No 196
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.00071 Score=72.63 Aligned_cols=58 Identities=9% Similarity=-0.117 Sum_probs=35.6
Q ss_pred CCCcceeecCCCCCcccc-cccc-cccccceeecccccccccCCcc-ccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREK-KLSV-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~L-P~si-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.+..+ |..+ .+.+|++|+|+++ .+..+|.. +..+.+|+.+++..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 666666677766666655 4455 6777777777663 56666654 355666665555433
No 197
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.04 E-value=0.00099 Score=73.89 Aligned_cols=119 Identities=11% Similarity=0.027 Sum_probs=59.7
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCC-CCCch---hhHhhHhhhhcCCccc-CcC--CCCcceeecCC
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGG-PNTSY---LRMEAWSGVFGNISAV-DET--LKKCLQFLRPK 602 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~-~~~~~---~~~~~l~~~~~~l~~l-P~~--~L~~LryL~L~ 602 (661)
..+.+.+..+..... ....+..+++|+.|.+.++... .|... ...+.|+.....+..+ |.. .+.+|++|+|+
T Consensus 255 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCcc-CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 345555544433221 1223556677777776654321 11110 0111122112223333 222 66677777777
Q ss_pred CCCcc-ccccc-c-cccccceeecccccccccC---Cccccccccccccccccc
Q 006107 603 YTSER-EKKLS-V-SIQNWNMAIWCKHTYLVTG---SVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 603 ~t~i~-~LP~s-i-~L~~Lq~L~l~~c~~l~~L---P~~i~~l~~L~~~~~~~~ 650 (661)
+|.+. .+|.. + ++.+|++|++++| .+..+ |..+..+++|+.++++.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 77654 56554 5 7777777777664 45544 555666666666655443
No 198
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.02 E-value=0.00083 Score=66.95 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++.+.++|++|+|||+||+.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445678899999999999999999874
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.02 E-value=0.013 Score=62.48 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=92.0
Q ss_pred cCccccchhhHHHHHHHHhc---CC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 176 EHEVFGREEDKAKILDMVNT---SS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~---~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
-.+++|.+..+.++.+.... .. +..-.+-+.|+|++|+||||||+.++.... ...+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEehhHHHH-
Confidence 35689998877766655432 10 001122388999999999999999987632 1223344322100
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC----CceEEEEEeCCCCCC----------hhh----HhhhhcccccC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVD----GKRFLLVLDDVRNED----------YSL----WVDLKAPFLAA 309 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~ 309 (661)
. ........+...++ ..+.++++|+++... ... ...+...+...
T Consensus 103 -------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 00111122222222 245799999996431 111 12333333322
Q ss_pred --CCCcEEEEEeCChhhhcc--c---CCCceeecCCCChHhHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHcCCCh
Q 006107 310 --APNSKMIITTRHSDVAST--M---GPIEHYNLKSLLDDDCWSIFIKHALEGRDLSAHQISESFRKKVVGKCRGLP 379 (661)
Q Consensus 310 --~~gs~ilvTTr~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 379 (661)
..+..++.||........ . .-...+.+...+.++-.+++..++-.. ....... ...|++.+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 233455566666544221 1 122468888889888888887665221 1111111 246788888876
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.00 E-value=0.0005 Score=69.01 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 184 EDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 184 ~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..++.+.+++..... .....+.|+|++|+|||+||..+++...
T Consensus 135 ~~~~~~~~~i~~~~~-~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS-AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSC-SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455566654321 1235688999999999999999988644
No 201
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.99 E-value=0.00015 Score=73.46 Aligned_cols=117 Identities=9% Similarity=-0.080 Sum_probs=75.0
Q ss_pred CcceEEEeeeCCCccccccccc-cCCCCceEEeeccccCCCCC---chhhHhhHhhhhcCCcccCcC--CCCcceeecCC
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVF-YEIELLRTFLPFCIRGGPNT---SYLRMEAWSGVFGNISAVDET--LKKCLQFLRPK 602 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~-~~~~~LrsL~~~~~~~~~~~---~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~ 602 (661)
.+.+++.+..+...... +..+ ..+++|+.|.+.++...... .....+.|+.....+..+|.. .+.+|++|+|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp SSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 34555655554433221 2223 35677888877665331100 011222333333455677766 89999999999
Q ss_pred CCCcccccccc-cccccceeecccccccc--cCCcccccccccccccc
Q 006107 603 YTSEREKKLSV-SIQNWNMAIWCKHTYLV--TGSVNLNFTQFLQLSDF 647 (661)
Q Consensus 603 ~t~i~~LP~si-~L~~Lq~L~l~~c~~l~--~LP~~i~~l~~L~~~~~ 647 (661)
+|.|+.+|..+ .+.+|++|+++++ .+. .+|..+..+++|+.+++
T Consensus 223 ~N~l~~l~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 223 NNKLVLIEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHH
T ss_pred CCcccchhhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEEC
Confidence 99999999999 9999999999985 455 67777777777765444
No 202
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.97 E-value=0.00027 Score=76.12 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=33.9
Q ss_pred CCCcceeecCCCCCccc-ccccc--cccccceeecccccccccCCccccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSERE-KKLSV--SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~-LP~si--~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.+.. .|..+ .|.+|++|+|++| .+..+|... .+.+|+.++++.+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~-~l~~L~~L~Ls~N 201 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN 201 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccc-cCCCCCEEECCCC
Confidence 66677777777777665 34444 4677777777664 466665432 4555555555433
No 203
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.95 E-value=0.0013 Score=70.06 Aligned_cols=108 Identities=7% Similarity=-0.131 Sum_probs=53.8
Q ss_pred CcceEEEeeeCCCccccccccccCCCCceEEeeccccCCC-CCchhhHhhHhhhhcCCcccCcC-CCCc-----------
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGP-NTSYLRMEAWSGVFGNISAVDET-LKKC----------- 595 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~-~~~~~~~~~l~~~~~~l~~lP~~-~L~~----------- 595 (661)
.+.+.+.+..+.... ++.+..+++|+.|.+.++.... +......+.|+.....+..+|.. .+.+
T Consensus 131 ~~L~~L~L~~n~l~~---lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCC---CcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 456777766654443 3457777888888776654321 11111222222222233344433 4444
Q ss_pred ---------ceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccc
Q 006107 596 ---------LQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQF 641 (661)
Q Consensus 596 ---------LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~ 641 (661)
|++|++++|.++.+| ++ .+.+|++|++++| .+..+|..+.+|+.
T Consensus 208 ~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~ 261 (454)
T 1jl5_A 208 KKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEA 261 (454)
T ss_dssp SSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCSCCTTCCE
T ss_pred CcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC-cCCcccccccccCE
Confidence 445555555555555 35 6666666666553 45555554433333
No 204
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.93 E-value=0.00054 Score=73.09 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=67.0
Q ss_pred cccCCCCceEEeeccccCCCCCch---hhHhhHhhhhcCCcccCcCCCCcceeecCCCCCcccccccc-cccccceeecc
Q 006107 549 VFYEIELLRTFLPFCIRGGPNTSY---LRMEAWSGVFGNISAVDETLKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWC 624 (661)
Q Consensus 549 ~~~~~~~LrsL~~~~~~~~~~~~~---~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~ 624 (661)
.+.++++|++|.+.++........ ...+.|+.....+..+|-..+.+|++|+|++|.++.+| + +|.+|++|+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 456788999999887643221111 11223333334455666338899999999999988886 8 99999999998
Q ss_pred cccccccCCccccccccccccccccc
Q 006107 625 KHTYLVTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 625 ~c~~l~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+| .+..+| ++++++|+.++++.+
T Consensus 115 ~N-~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 115 TN-KLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp SS-CCSCCC--CTTCTTCCEEECTTS
T ss_pred CC-cCCeec--CCCCCcCCEEECCCC
Confidence 85 688887 778888887766554
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.89 E-value=0.0019 Score=74.58 Aligned_cols=133 Identities=13% Similarity=0.235 Sum_probs=72.3
Q ss_pred ccccchhhHHHHHHHHhcCC-----CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHH
Q 006107 178 EVFGREEDKAKILDMVNTSS-----DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
.++|.+..++.+...+.... .+.....+.|+|++|+|||++|+.+.+...-.+ ...+.++.+.-... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~-~~~- 633 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEK-HAV- 633 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSS-GGG-
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccch-hHH-
Confidence 57999998888888775421 122335788999999999999999987542111 12344544432211 000
Q ss_pred HHHHHhccCCC---CCCCHHHHHHHHHhhcCCceEEEEEeCCCCCChhhHhhhhcccccCC-----------CCcEEEEE
Q 006107 253 ALLESITSAAS---DLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAA-----------PNSKMIIT 318 (661)
Q Consensus 253 ~il~~l~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 318 (661)
..+.+... +......+...+.. ...-+|+||+++.........+...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 01110000 00000112222222 234699999999887666666666554321 24447777
Q ss_pred eCC
Q 006107 319 TRH 321 (661)
Q Consensus 319 Tr~ 321 (661)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 206
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.87 E-value=0.0016 Score=71.22 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=31.1
Q ss_pred CCcccCcCCCCcceeecCCCCCcccccccccccccceeecccccccccCCcccc
Q 006107 584 NISAVDETLKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLN 637 (661)
Q Consensus 584 ~l~~lP~~~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~ 637 (661)
.+..+|. .+.+|++|+|++|.|+.+|. +. .+|++|+|++ +.+..+|. +.
T Consensus 151 ~l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~-N~L~~lp~-~~ 199 (571)
T 3cvr_A 151 QLTMLPE-LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVST-NLLESLPA-VP 199 (571)
T ss_dssp CCSCCCC-CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCS-SCCSSCCC-CC
T ss_pred ccCcCCC-cCCCcCEEECCCCCCCCcch-hh-CCCCEEECcC-CCCCchhh-HH
Confidence 3344554 55667777777777666666 54 6777777776 35777776 44
No 207
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.84 E-value=0.0017 Score=73.04 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=37.3
Q ss_pred CCCcceeecCCCCCccccccc-c-cccccceeecccccccccCCccc-cccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~i-~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.++.+|.. + .|.+|++|++++ ..+..+|.++ ..+.+|+.++++.+
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 556667777777666666664 4 677777777765 4566776653 56666666655544
No 208
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.0015 Score=65.65 Aligned_cols=124 Identities=5% Similarity=-0.188 Sum_probs=76.6
Q ss_pred CcceEEEeeeCCCccccc-c--ccccCCCCceEEeeccccCCC-CCc----hhhHhhHhhhhcCCcc---cCcC----CC
Q 006107 529 ERVRHSSYGRGWLDGKNK-F--EVFYEIELLRTFLPFCIRGGP-NTS----YLRMEAWSGVFGNISA---VDET----LK 593 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~-~--~~~~~~~~LrsL~~~~~~~~~-~~~----~~~~~~l~~~~~~l~~---lP~~----~L 593 (661)
.+.+.+.+..+....... . ..+..+++|++|.+.++.... +.. ....+.|+.....+.. +|.. .+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 456677776665443111 0 223468899999887654321 111 1112223222122221 3222 78
Q ss_pred CcceeecCCCCCccccccc----c-cccccceeecccccccccC-Ccccccc---cccccccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLS----V-SIQNWNMAIWCKHTYLVTG-SVNLNFT---QFLQLSDFGTHIGA 653 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~s----i-~L~~Lq~L~l~~c~~l~~L-P~~i~~l---~~L~~~~~~~~~~~ 653 (661)
.+|++|+|++|.++.+|.. + .+.+|++|+|+++ .+..+ |..+..+ ++|+.++++.+..+
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 8999999999999888774 5 7899999999985 67776 8888776 58887777665433
No 209
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.83 E-value=0.0016 Score=66.81 Aligned_cols=63 Identities=11% Similarity=-0.088 Sum_probs=47.5
Q ss_pred cCCcccCcC---CCCcceeecCCCCCcccccccccccccceeecccccccccCCcccccccccccccc
Q 006107 583 GNISAVDET---LKKCLQFLRPKYTSEREKKLSVSIQNWNMAIWCKHTYLVTGSVNLNFTQFLQLSDF 647 (661)
Q Consensus 583 ~~l~~lP~~---~L~~LryL~L~~t~i~~LP~si~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~~~~~ 647 (661)
..++.+|.. .+.+|++|+|++|.|+.+|... +.+|+.|.+.+|..+++|| .+.+|.+|+..++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 456678875 8999999999999999999875 3344455555567789999 4777777775554
No 210
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.82 E-value=0.0018 Score=71.66 Aligned_cols=20 Identities=15% Similarity=-0.157 Sum_probs=12.3
Q ss_pred CCcceeecCCCCCccccccc
Q 006107 593 KKCLQFLRPKYTSEREKKLS 612 (661)
Q Consensus 593 L~~LryL~L~~t~i~~LP~s 612 (661)
+.+|++|+|++|.++.+|..
T Consensus 140 l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 140 PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCEEECcCCcCCCcCCc
Confidence 45666666666666665543
No 211
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.71 E-value=0.00049 Score=68.31 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=43.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe--CCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV--SDNFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
+++.|+|++|+|||+||.++... .+ . .++|++. .+..+. . ..+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G--~-~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LG--G-KDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HH--T-TSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CC--C-CEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 56789999999999999999875 11 1 2345665 222110 0 0344555555555555
Q ss_pred CceEEEEEeCCCCC
Q 006107 281 GKRFLLVLDDVRNE 294 (661)
Q Consensus 281 ~kr~LlVlDdv~~~ 294 (661)
..+ +||+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 555 9999999654
No 212
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.70 E-value=0.0054 Score=63.47 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=34.5
Q ss_pred ccccchhhHHHHHHHHh----cC----------------------CCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 178 EVFGREEDKAKILDMVN----TS----------------------SDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~----~~----------------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++|.+..++.|...+. .. ........+.++|++|+|||++|+.+.+..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46888888887777662 00 001123457899999999999999998753
No 213
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.70 E-value=0.0024 Score=68.00 Aligned_cols=48 Identities=8% Similarity=-0.081 Sum_probs=27.9
Q ss_pred CcceeecCCCCCcccccccc-cccccceeecccccccccCCcccccccccc
Q 006107 594 KCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQ 643 (661)
Q Consensus 594 ~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~ 643 (661)
.+|++|+|++|.++.+| ++ +|.+|++|++++| .+..+|....+|+.|.
T Consensus 173 ~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDLPLSLESIV 221 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEE
T ss_pred ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCCcCcccEEE
Confidence 35666666666666665 46 6666666666663 4566665544444443
No 214
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.67 E-value=0.00073 Score=68.74 Aligned_cols=59 Identities=7% Similarity=-0.130 Sum_probs=47.2
Q ss_pred CCCcceeecCCCC-Ccc--cccccc-cccccceeeccccccccc--CCccccccc-cccccccccc
Q 006107 592 LKKCLQFLRPKYT-SER--EKKLSV-SIQNWNMAIWCKHTYLVT--GSVNLNFTQ-FLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t-~i~--~LP~si-~L~~Lq~L~l~~c~~l~~--LP~~i~~l~-~L~~~~~~~~ 650 (661)
.+.+|++|+|++| .++ .+|..+ ++.+|++|++++|..+.. +|..+..+. +|+.++++.+
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6788999999999 577 488888 999999999999856764 677777777 7776666554
No 215
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.64 E-value=0.029 Score=57.05 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=98.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHh-hcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLKK-AVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~ 280 (661)
.++..++|+.|.||++.+..+.+...- . .|+....+.+....+..++. ..+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~l~---------------------~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA-Q-GFEEHHTFSIDPNTDWNAIF---------------------SLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH-H-TCCEEEEEECCTTCCHHHHH---------------------HHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh-C-CCCeeEEEEecCCCCHHHHH---------------------HHhcCcCCc
Confidence 358899999999999999888765321 2 34322222233333333332 22211 123
Q ss_pred CceEEEEEeCCCC-CChhhHhhhhcccccCCCCcEEEEEeCC-------hhhhccc-CCCceeecCCCChHhHHHHHHHh
Q 006107 281 GKRFLLVLDDVRN-EDYSLWVDLKAPFLAAAPNSKMIITTRH-------SDVASTM-GPIEHYNLKSLLDDDCWSIFIKH 351 (661)
Q Consensus 281 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTr~-------~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 351 (661)
+.+-++|+|+++. .....++.+...+....+++.+|++|.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5567889999987 5556677777776655567777776643 1233332 33467889999999998888777
Q ss_pred hcCCCCCCcchhhHHHHHHHHHHcCCChHHHHHH
Q 006107 352 ALEGRDLSAHQISESFRKKVVGKCRGLPLAAKTL 385 (661)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 385 (661)
+-..+- ....+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 633221 122456788999999998877654
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.03 Score=54.90 Aligned_cols=153 Identities=13% Similarity=0.100 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHhc----------CCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 177 HEVFGREEDKAKILDMVNT----------SSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
.++.|-++.+++|.+.+.. -+-... +-+.|+|++|+||||||+.++.... . ..++++...-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~-----~-~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAVANESG-----L-NFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC-SEEEEESSTTSCHHHHHHHHHHHTT-----C-EEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC-CeEEEECCCCCcHHHHHHHHHHHcC-----C-CEEEEEcHHHHh
Confidence 4577888777777665421 010111 2289999999999999999987532 1 334444322111
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHH-HhhcCCceEEEEEeCCCCCCh-----------hhHhhhhcccccC--CCC
Q 006107 247 VFNILKALLESITSAASDLNTLNEVQVQL-KKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLAA--APN 312 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~g 312 (661)
.. ..........+ ...-...+.++++|+++.... .....+...+..+ ...
T Consensus 83 ~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 00 00001111111 111124578999999975310 0112222222222 123
Q ss_pred cEEEEEeCChhhhccc-----CCCceeecCCCChHhHHHHHHHhh
Q 006107 313 SKMIITTRHSDVASTM-----GPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 313 s~ilvTTr~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
.-++.+|....+.... .-...+.+...+.++-.+++....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3455566655443221 223567888888888888887765
No 217
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.61 E-value=0.013 Score=66.68 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=83.5
Q ss_pred cCccccchhhHHHHHHHHhc----C-----CCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCC
Q 006107 176 EHEVFGREEDKAKILDMVNT----S-----SDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~----~-----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 246 (661)
-.+++|.+..+++|.+++.. . -.-.....|.|+|++|+||||||+.+..... . ..+.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~----~~i~v~~~~--- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A----FFFLINGPE--- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--C----EEEEEEHHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--C----cEEEEEchH---
Confidence 35689999999998888753 0 0112334688999999999999999987532 1 123333211
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhHhhhhccccc--CCCCc
Q 006107 247 VFNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRNEDY-----------SLWVDLKAPFLA--AAPNS 313 (661)
Q Consensus 247 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs 313 (661)
+..... ......+...+.......+.++++|+++.... .....+...+.. ...+.
T Consensus 274 -----------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 -----------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred -----------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 111000 00011122223333334678999999953210 011122222211 12344
Q ss_pred EEEEEeCChhhh-cccC---C-CceeecCCCChHhHHHHHHHhh
Q 006107 314 KMIITTRHSDVA-STMG---P-IEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 314 ~ilvTTr~~~v~-~~~~---~-~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
.+|.||...... ..+. . ...+.+...+.++-.+++..++
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 556566543221 1111 1 2456788888888888888665
No 218
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.56 E-value=0.00033 Score=73.04 Aligned_cols=58 Identities=5% Similarity=-0.220 Sum_probs=39.8
Q ss_pred CCCcceeecCCCCCccc-----ccccc-c--ccccceeeccccccccc-----CCccc-cccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSERE-----KKLSV-S--IQNWNMAIWCKHTYLVT-----GSVNL-NFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~-----LP~si-~--L~~Lq~L~l~~c~~l~~-----LP~~i-~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.|.. +|..+ . +.+|++|+|++| .+.. +|..+ .++++|+.+++..+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 66778888888877654 46666 5 778888888775 4555 77776 55666666666444
No 219
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.54 E-value=0.00033 Score=71.31 Aligned_cols=63 Identities=13% Similarity=-0.012 Sum_probs=49.7
Q ss_pred cCcC--CCCcceeecCCCC-Cccc--ccccc-ccc-ccceeeccccc-cc--ccCCccccccccccccccccc
Q 006107 588 VDET--LKKCLQFLRPKYT-SERE--KKLSV-SIQ-NWNMAIWCKHT-YL--VTGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 588 lP~~--~L~~LryL~L~~t-~i~~--LP~si-~L~-~Lq~L~l~~c~-~l--~~LP~~i~~l~~L~~~~~~~~ 650 (661)
+|.. .+.+|++|+|++| .++. +|..+ .+. +|++|++++|. .+ ..+|..+.++++|+.++++.+
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 4443 7899999999999 8885 78889 999 99999999974 34 567777777777776666544
No 220
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.49 E-value=0.0087 Score=59.11 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=55.9
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHH-HHHHHh
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEV-QVQLKK 277 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l-~~~l~~ 277 (661)
++-|.|++|+|||||+.+++....... .-..++|++....++... +++++.... ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 689999999999999988876643221 134789999888877642 556654332 12345554 333322
Q ss_pred h---cCCceEEEEEeCCCCC
Q 006107 278 A---VDGKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~---l~~kr~LlVlDdv~~~ 294 (661)
. -.++.-++|+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 2467889999998654
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.37 E-value=0.0072 Score=61.43 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|+|++|+|||||+.+++...... -..++|++....++.. .++.++.... ...+.++....+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 699999999999999999998764322 2356888887776654 3444443221 23445555555554
Q ss_pred hcC-CceEEEEEeCCCCC
Q 006107 278 AVD-GKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l~-~kr~LlVlDdv~~~ 294 (661)
.+. .+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 443 45568999998654
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.0018 Score=61.26 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=62.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS--DLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~ 280 (661)
.++.|+|+.|+||||++..+.++....+ . .++.++...+.. ....+++.++.... ......++...+.+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g--~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD--V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC--C-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 5889999999999999988877654322 2 333343222211 11123333322111 11233455666666554
Q ss_pred Cce-EEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 281 GKR-FLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 281 ~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
+.+ -+||+|.+...+....+.+ ..+.+ .|..||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 444 4999999986543333333 33333 378899998853
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.10 E-value=0.0098 Score=56.60 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-------------------
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS------------------- 263 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~------------------- 263 (661)
.++.|+|++|+|||||++.++......+ ..++|++... ...++...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 4899999999999999999986543221 2456665433 3444433332 2221100
Q ss_pred ----CCCCHHHHHHHHHhhc---CCceEEEEEeCCCCC---ChhhHhhhhccccc--CCCCcEEEEEeCCh
Q 006107 264 ----DLNTLNEVQVQLKKAV---DGKRFLLVLDDVRNE---DYSLWVDLKAPFLA--AAPNSKMIITTRHS 322 (661)
Q Consensus 264 ----~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTTr~~ 322 (661)
...+..++...+...+ .-+..+||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0114445544444433 223349999998632 22222333333221 23577888888764
No 224
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.04 E-value=0.0066 Score=56.62 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 182 REEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 182 R~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
|++.++.|.+.+.... .....+|+|.|++|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~-~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK-TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSC-CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5567778888776542 2345799999999999999999987643
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.03 E-value=0.016 Score=59.20 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=55.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|.|++|+||||||.++...... .-..++|++....++... ++.++.... ...+.+++...+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 47889999999999999988766432 223688999887766542 334432211 22455666666665
Q ss_pred hcC-CceEEEEEeCCCCC
Q 006107 278 AVD-GKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l~-~kr~LlVlDdv~~~ 294 (661)
... ...-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 554 34559999998643
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.00 E-value=0.025 Score=57.45 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=37.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhccccccc---CCCCEEEEEEeCCCCCHHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVAD---SKFDVKAWVCVSDNFDVFNILK 252 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~ 252 (661)
-.++.|+|++|+||||||..++....... +.-..++|++....++...+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 36899999999999999999876532110 0234788999888777766543
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.92 E-value=0.019 Score=54.99 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=33.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEEEeCCCCCHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWVCVSDNFDVFNI 250 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~ 250 (661)
.++.|+|++|+|||||+..+....... +..-..++|++....+....+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 489999999999999999987642111 001357889987776555443
No 228
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.88 E-value=0.0031 Score=65.53 Aligned_cols=58 Identities=12% Similarity=-0.102 Sum_probs=39.7
Q ss_pred CCCcceeecCCCCCc-----ccccccc-cccccceeeccccccccc-----CCccc--cccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSE-----REKKLSV-SIQNWNMAIWCKHTYLVT-----GSVNL--NFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i-----~~LP~si-~L~~Lq~L~l~~c~~l~~-----LP~~i--~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.+ ..+|..+ ++++|++|+|++|. +.. +|..+ +++++|+.++++.+
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 677788888888877 6678877 88888888887753 443 45555 33666666666544
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.84 E-value=0.017 Score=58.83 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=54.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|+|++|+||||||.++...... .-..++|++....++.. .++.++.... ...+.++....+..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 48999999999999999998765432 22467899988776653 2334432211 22345555555544
Q ss_pred hcC-CceEEEEEeCCCCC
Q 006107 278 AVD-GKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l~-~kr~LlVlDdv~~~ 294 (661)
... .+.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 443 34569999998654
No 230
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.80 E-value=0.03 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998654
No 231
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.79 E-value=0.041 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999997653
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.022 Score=56.52 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcC
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 280 (661)
..+++|+|++|+||||++..+........ . ..+..+.... .....+.+....+..+.+.....+...+...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK-H-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT-C-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 35899999999999999999876544211 1 1344454432 2233344444333332221112233344444443 2
Q ss_pred CceEEEEEeCC
Q 006107 281 GKRFLLVLDDV 291 (661)
Q Consensus 281 ~kr~LlVlDdv 291 (661)
...=++++|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457888843
No 233
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.77 E-value=0.067 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999997653
No 234
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.73 E-value=0.018 Score=58.12 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=38.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccc---cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVA---DSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.++.|+|++|+|||+||.+++...... ++.-..++|++....++..++.. ++..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 489999999999999999987653211 00134789999888777766553 34444
No 235
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.73 E-value=0.019 Score=57.95 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccc----------c-CCC--CEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVA----------D-SKF--DVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~----------~-~~f--~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.++.|+|++|+|||+||.+++...... . +.. ..++|++....++..++... +..++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 589999999999999999987642111 0 001 47889998888777766543 34443
No 236
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.70 E-value=0.0089 Score=59.83 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=34.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 179 VFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 179 ~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|....+..+...+........+.+|+|.|+.|+|||||++.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35555556656555555433456779999999999999999988654
No 237
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.69 E-value=0.0081 Score=58.44 Aligned_cols=77 Identities=13% Similarity=-0.080 Sum_probs=49.8
Q ss_pred CCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC--CCCcceeecCCCCCcccccccc-ccc--ccceeecccc
Q 006107 552 EIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET--LKKCLQFLRPKYTSEREKKLSV-SIQ--NWNMAIWCKH 626 (661)
Q Consensus 552 ~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~--~L~~LryL~L~~t~i~~LP~si-~L~--~Lq~L~l~~c 626 (661)
++++|++|.+.++.. ..+..+|.. .+.+|++|+|++|.|+.+ .++ .|. +|++|+|++.
T Consensus 168 ~l~~L~~L~Ls~N~l----------------~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRL----------------YRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCC----------------CCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCC----------------CCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 456777777766432 233344444 788899999999988887 446 666 8999999884
Q ss_pred cccc-cCCc-------cccccccccccc
Q 006107 627 TYLV-TGSV-------NLNFTQFLQLSD 646 (661)
Q Consensus 627 ~~l~-~LP~-------~i~~l~~L~~~~ 646 (661)
.+. .+|. -+..+.+|+.+|
T Consensus 231 -pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 -SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -cCccccCcchhHHHHHHHHCcccCeEC
Confidence 343 3552 134555665544
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.67 E-value=0.0077 Score=56.47 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 185 DKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 185 e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
-+++|.+.+... .....+|+|+|++|+|||||++.+..-..
T Consensus 7 ~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555555432 23456999999999999999999876543
No 239
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.58 E-value=0.01 Score=54.42 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=60.9
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC---CCCHHHHHHHHHHHh---ccCCC-CCC-------CHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD---NFDVFNILKALLESI---TSAAS-DLN-------TLN 269 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~il~~l---~~~~~-~~~-------~~~ 269 (661)
.|.|++..|.||||+|--..-+.- + +--.+.++.... ......++..+--.+ +.... ... ...
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~--g-~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAV--G-HGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHH--H-TTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--H-CCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 566777788999999977665432 2 222444454332 233344444431000 00000 000 112
Q ss_pred HHHHHHHhhcCCceE-EEEEeCCCCC---ChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 270 EVQVQLKKAVDGKRF-LLVLDDVRNE---DYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 270 ~l~~~l~~~l~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
......++.+.+.+| |||||++-.. .....+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233344555655444 9999998321 2223445555555556778999999974
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.55 E-value=0.018 Score=58.61 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=32.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccc--cCC-CCEEEEEEeCCCCCHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVA--DSK-FDVKAWVCVSDNFDVFN 249 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~~~wv~v~~~~~~~~ 249 (661)
-.++.|+|++|+|||||+..++...... .+. -..++|++....+....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 3699999999999999999987653211 001 12458888766554433
No 241
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.46 E-value=0.0013 Score=60.49 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=52.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHhhcC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA--ASDLNTLNEVQVQLKKAVD 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~--~~~~~~~~~l~~~l~~~l~ 280 (661)
.++.|+|+.|+||||++..+..+....+ . .++++....+ ...-...+...++.. .....+.. .+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhc
Confidence 3788999999999999976665543222 2 2333332211 000000000000000 00011111 1223333
Q ss_pred CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC
Q 006107 281 GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~ 321 (661)
++.-+|++|.+...+. .|......+.+. |..|++|.+.
T Consensus 75 ~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 4567999999987643 355544444442 7789988774
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.46 E-value=0.023 Score=57.87 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=52.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|.|++|+||||||.+++..... .-..++|++....++... +..++.... ...+.+++...+..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 48999999999999999998766432 223688999887776442 333432211 12234555444443
Q ss_pred hc-CCceEEEEEeCCCCC
Q 006107 278 AV-DGKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l-~~kr~LlVlDdv~~~ 294 (661)
.. ..+.-+||+|.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHTCCSEEEEECGGGC
T ss_pred HHhccCCCEEEEcCHHHh
Confidence 33 234458999987543
No 243
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.43 E-value=0.014 Score=57.79 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
....+|+|+|+.|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999998876543
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.31 E-value=0.028 Score=57.02 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF 245 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 245 (661)
++++.+..-..+ ..++|+|++|+|||||++.+.+........+. ++++-+.+..
T Consensus 163 raID~~~pi~rG---Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRG---QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTT---CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCC---cEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 455655543222 37899999999999999998765432211333 3456666553
No 245
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.28 E-value=0.0086 Score=58.28 Aligned_cols=57 Identities=12% Similarity=-0.094 Sum_probs=44.6
Q ss_pred CCCcceeecCCCCCccccc---ccc-cccccceeecccccccccCCccccccc--cccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKK---LSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQ--FLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP---~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~--~L~~~~~~~~ 650 (661)
++.+|+.|+|++|.|+.++ ..+ +|.+|++|+|++ +.+..+ .++..++ +|+.+++..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCC
Confidence 6789999999999987654 677 999999999997 678877 4466666 6665665444
No 246
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.26 E-value=0.0092 Score=54.26 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 247
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.25 E-value=0.014 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....+|.|.|++|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999764
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.0087 Score=54.06 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=18.7
Q ss_pred EEEEEeccCCChHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREV 222 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v 222 (661)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.16 E-value=0.011 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999875
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.16 E-value=0.03 Score=52.23 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=43.6
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhcc---------CCCCCCCHHHHHHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITS---------AASDLNTLNEVQVQ 274 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~---------~~~~~~~~~~l~~~ 274 (661)
+|.|.|+||+||+|.|+.+...... ..++ .-+++++-+..-+. .....-+.+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~--------~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF--------VHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--------EEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--------eEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 5789999999999999999875321 1222 23444433221100 01122333445556
Q ss_pred HHhhcCCceEEEEEeCCCCC
Q 006107 275 LKKAVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~ 294 (661)
+.+.+..... +|||.+-..
T Consensus 68 v~~~l~~~~~-~ilDGfPRt 86 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFPRT 86 (206)
T ss_dssp HHHHCCSSSC-EEEESCCCS
T ss_pred HHHhhccCCc-eEecCCchh
Confidence 6667755443 688998654
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.15 E-value=0.009 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|.|.|++|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999765
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.0094 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 253
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.14 E-value=0.034 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 48999999999999999998654
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.10 E-value=0.0094 Score=54.41 Aligned_cols=23 Identities=13% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999764
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.07 E-value=0.087 Score=52.33 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=47.5
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH--HHHHHHHHHHhccCC---CCCCCHHHH-HH
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV--FNILKALLESITSAA---SDLNTLNEV-QV 273 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~il~~l~~~~---~~~~~~~~l-~~ 273 (661)
....+++|+|++|+||||++..++......+ ..+.++... .+.. .+.+...++..+... ....+.... ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD 177 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 3457999999999999999999887654222 234444432 2222 222333444333211 111222222 23
Q ss_pred HHHhhcCCceEEEEEeCCCC
Q 006107 274 QLKKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~ 293 (661)
.+...+....-++++|-.-.
T Consensus 178 al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHhcCCCEEEEECCCc
Confidence 34444444445788887643
No 256
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.04 E-value=0.016 Score=59.58 Aligned_cols=49 Identities=27% Similarity=0.239 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhc-----------CCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 178 EVFGREEDKAKILDMVNT-----------SSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 178 ~~vGR~~e~~~l~~~L~~-----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++|.+..++.+...+.. .........+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999888888887721 0011133468899999999999999998763
No 257
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.01 E-value=0.023 Score=54.97 Aligned_cols=50 Identities=32% Similarity=0.408 Sum_probs=33.2
Q ss_pred CccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|.+..+.++.+....-. +-.-.+-+.|+|++|+|||||++.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 568898876666655432100 00111228899999999999999998753
No 258
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.00 E-value=0.056 Score=54.90 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCceEEEEEeCCCCC-ChhhHhhhhccccc--CCCCcEEEEEeCChhhhcc
Q 006107 270 EVQVQLKKAVDGKRFLLVLDDVRNE-DYSLWVDLKAPFLA--AAPNSKMIITTRHSDVAST 327 (661)
Q Consensus 270 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~~ 327 (661)
...-.+.+.|..++-+|++|.--.. |...-..+...+.. ...|..||++|.+..++..
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 3344567778888889999997543 33333333333322 2347788888888766543
No 259
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.94 E-value=0.031 Score=62.90 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=55.8
Q ss_pred CccccchhhHHHHHHHHhcCC---------CCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH
Q 006107 177 HEVFGREEDKAKILDMVNTSS---------DHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV 247 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~---------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 247 (661)
.++.|.++.+++|.+.+.-.- .-..++-+.++|++|.|||.||+.+++.... -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--------EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--------ceEEecc----
Confidence 456788877777776653311 1123445789999999999999999986431 1223321
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCCceEEEEEeCCCC
Q 006107 248 FNILKALLESITSAASDLNTLNEVQVQLKKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 248 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 293 (661)
.+ ++ .... ......+...+...-+..+.+|+||+++.
T Consensus 545 ~~----l~----s~~v-Gese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LL----TMWF-GESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HH----TTTC-SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hh----cccc-chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 11 1111 12222333333334456789999999875
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.92 E-value=0.024 Score=57.13 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 180 FGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 180 vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
++-+.-.+++.+.+...-..+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34445556666666432223445678999999999999999887653
No 261
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.91 E-value=0.068 Score=54.08 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCceEEEEEeCCCC-CChhhHhhhhccccc--CCCCcEEEEEeCChhhhc
Q 006107 271 VQVQLKKAVDGKRFLLVLDDVRN-EDYSLWVDLKAPFLA--AAPNSKMIITTRHSDVAS 326 (661)
Q Consensus 271 l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTTr~~~v~~ 326 (661)
..-.+.+.+..++-+|+||+--. .|...-..+...+.. ...|..||++|.+...+.
T Consensus 134 QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 134 QRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192 (348)
T ss_dssp HHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 34456677777888999999654 233322333333322 123677888888765443
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.90 E-value=0.012 Score=54.68 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|.|+|++|+||||+++.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 263
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.85 E-value=0.017 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|+|+|++|+|||||++.+.....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987654
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.84 E-value=0.015 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.82 E-value=0.048 Score=57.05 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHH
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALL 255 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il 255 (661)
.++|+|++|+|||||++.+..+.... +.+.++++.+.+.. ...+++.++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhh
Confidence 57899999999999999988764432 23455667666654 3345554454
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.80 E-value=0.11 Score=54.25 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=47.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCC---CCCCHHHH-HHHH
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAAS---DLNTLNEV-QVQL 275 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~l-~~~l 275 (661)
.+.+|.++|++|+||||++..+.......+ . .+..++... .....+.+.......+.+.. ...+.... ...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 468999999999999999998886654322 2 333344331 12233334444444332211 11222222 2333
Q ss_pred HhhcCCceEEEEEeCCCC
Q 006107 276 KKAVDGKRFLLVLDDVRN 293 (661)
Q Consensus 276 ~~~l~~kr~LlVlDdv~~ 293 (661)
........=++++|-...
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 333333344667887653
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.80 E-value=0.011 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999764
No 268
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.76 E-value=0.017 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+++|+|++|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999997543
No 269
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.76 E-value=0.015 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|++|+|||||++.+....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998753
No 270
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.76 E-value=0.015 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
...++|.|.|++|+||||.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998753
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.74 E-value=0.2 Score=50.13 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=37.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.++.|.|.+|+||||||..++.+.... . ..++|++.. .+..++...++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~--g-~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN--D-DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT--T-CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 488999999999999999987654322 2 567787765 46777777776653
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.74 E-value=0.12 Score=51.81 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=23.4
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+++|+|+.|+||||+++.+.....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999877544
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.72 E-value=0.015 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+|.|.|++|+||||+++.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987643
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.70 E-value=0.11 Score=53.65 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=36.1
Q ss_pred EEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.++.|+|++|+|||||+..++-.... .++.-..++|++....+....+. .+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 48999999999999999976522111 11123468899887766655443 3444443
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.68 E-value=0.087 Score=52.99 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=37.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.++.|.|.+|+||||||..++..... .-..++|++. ..+..++...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 48889999999999999998876443 2236667665 4567777777766543
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.65 E-value=0.016 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999998764
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.65 E-value=0.02 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+++|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 368999999999999999998754
No 278
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.64 E-value=0.016 Score=58.98 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~----~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG----IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG----GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC----CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999886665544443221 1238899999999999999998753
No 279
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.63 E-value=0.034 Score=54.65 Aligned_cols=51 Identities=31% Similarity=0.375 Sum_probs=34.3
Q ss_pred cCccccchhhHHHHHHHHhcCC--------CCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 176 EHEVFGREEDKAKILDMVNTSS--------DHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 176 ~~~~vGR~~e~~~l~~~L~~~~--------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
-.+++|.+..++++.+....-. +-.-.+-+.|+|++|+|||||++.++...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4568998877766665442210 00111228899999999999999998753
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.63 E-value=0.015 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+.|.|+|++|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999765
No 281
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.61 E-value=0.017 Score=52.51 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987654
No 282
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.59 E-value=0.022 Score=52.09 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+|.|.|++|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987654
No 283
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.57 E-value=0.039 Score=49.75 Aligned_cols=89 Identities=4% Similarity=0.034 Sum_probs=54.5
Q ss_pred cceEEEeeeCCCccccccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcCCCCcceeecCCCCC-ccc
Q 006107 530 RVRHSSYGRGWLDGKNKFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDETLKKCLQFLRPKYTS-ERE 608 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~-i~~ 608 (661)
...++.+..+..... -+..+..+++|++|.+.+|.. ++-..+..+.. + +. ...+|++|+|++|. |+.
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~------ItD~gL~~L~~-~---~~-~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHY------IEDGCLERLSQ-L---EN-LQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTT------CCHHHHHHHHT-C---HH-HHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCc------cCHHHHHHHHh-c---cc-ccCCCCEEEcCCCCcCCH
Confidence 466777666553322 255667889999998887643 22222221110 0 00 01368999999985 664
Q ss_pred --ccccc-cccccceeeccccccccc
Q 006107 609 --KKLSV-SIQNWNMAIWCKHTYLVT 631 (661)
Q Consensus 609 --LP~si-~L~~Lq~L~l~~c~~l~~ 631 (661)
+ ..+ ++++|++|+|++|..+..
T Consensus 130 ~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 3 246 889999999999976654
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.56 E-value=0.017 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|++|+|||||++.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999764
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.55 E-value=0.02 Score=53.64 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.55 E-value=0.012 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999765
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.53 E-value=0.014 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999997643
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.49 E-value=0.02 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.48 E-value=0.013 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|+||+|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999765
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.43 E-value=0.018 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998754
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.02 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998764
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.42 E-value=0.024 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...+|+|.|++|+||||+++.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.41 E-value=0.024 Score=52.93 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.41 E-value=0.02 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999765
No 295
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.39 E-value=0.023 Score=52.69 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999764
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.016 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..+|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999997653
No 297
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.34 E-value=0.02 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999997653
No 298
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.33 E-value=0.017 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998754
No 299
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.28 E-value=0.045 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...+|+|+|+.|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999998764
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.27 E-value=0.017 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|.|+|++|+||||+++.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.25 E-value=0.022 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|.|++|+||||+|+.+.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 302
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.21 E-value=0.021 Score=52.65 Aligned_cols=24 Identities=13% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++++|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999764
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.20 E-value=0.022 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999875
No 304
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.19 E-value=0.03 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.14 E-value=0.023 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|+|++|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.14 E-value=0.024 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999764
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.13 E-value=0.024 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+.+|+|+|++|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999854
No 308
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.13 E-value=0.027 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|.|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.11 E-value=0.027 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 310
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.10 E-value=0.026 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=21.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.09 E-value=0.024 Score=52.75 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhc
Q 006107 204 VIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~ 224 (661)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 312
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.09 E-value=0.026 Score=54.55 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.2
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+.+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 313
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.07 E-value=0.049 Score=57.80 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=55.3
Q ss_pred EEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHH---------
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQ--------- 274 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~--------- 274 (661)
.+.|.|++|+|||+++..+.......+ ...++.+.-+. .....+.+.++.. ..........
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~a~T~-----~Aa~~l~~~~~~~---~~T~h~~~~~~~~~~~~~~ 116 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG--ETGIILAAPTH-----AAKKILSKLSGKE---ASTIHSILKINPVTYEENV 116 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSH-----HHHHHHHHHHSSC---EEEHHHHHTEEEEECSSCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEecCcH-----HHHHHHHhhhccc---hhhHHHHhccCcccccccc
Confidence 788999999999999999887654322 22333332221 1112222222111 0111111000
Q ss_pred -H---HhhcCCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 275 -L---KKAVDGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 275 -l---~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
+ ......+--+||+|++...+...+..+...+. .+.++++.--..+
T Consensus 117 ~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 117 LFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred hhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 0 00001123489999998877666666665553 4677777665444
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.07 E-value=0.029 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|+|.|++|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 315
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.06 E-value=0.019 Score=60.85 Aligned_cols=35 Identities=9% Similarity=-0.049 Sum_probs=29.9
Q ss_pred cceeecCCCCCcc-----cccccc-cccccceeecccccccc
Q 006107 595 CLQFLRPKYTSER-----EKKLSV-SIQNWNMAIWCKHTYLV 630 (661)
Q Consensus 595 ~LryL~L~~t~i~-----~LP~si-~L~~Lq~L~l~~c~~l~ 630 (661)
+|++|+|++|.|. .+|..+ ++.+|++|++++|. +.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~ 126 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LG 126 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-Cc
Confidence 6999999999887 678999 99999999999864 54
No 316
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.05 E-value=0.19 Score=47.84 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCC-CEEEEEEeCCCCCHHHHHHHHHHHhccCCC-
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKF-DVKAWVCVSDNFDVFNILKALLESITSAAS- 263 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~il~~l~~~~~- 263 (661)
.++++..+... +.+.|.|+.|+||||+...+.-+........ ...+.+..........+...+...+.....
T Consensus 66 q~~~i~~i~~g------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 66 ESEILEAISQN------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp HHHHHHHHHHC------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred HHHHHHHHhcC------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 44555555443 3788999999999987655533221111111 223333333333334444444443332210
Q ss_pred --------------CC-----CCHHHHHHHHHhhcCCceEEEEEeCCCCC
Q 006107 264 --------------DL-----NTLNEVQVQLKKAVDGKRFLLVLDDVRNE 294 (661)
Q Consensus 264 --------------~~-----~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 294 (661)
.. ...+.+...+...+.+- -+||+|+++..
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 00 12344555555544333 47899999874
No 317
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.04 E-value=0.22 Score=52.07 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHH
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLES 257 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~ 257 (661)
+.++.|..-..+ .-++|.|.+|+|||+|+..+.++.. +. +-+.++++-+.+.. .+.++..++...
T Consensus 142 r~ID~l~pigkG---Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~-~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKG---GKIGLFGGAGVGKTVLIMELINNVA-KA-HGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETT---CEEEEEECTTSSHHHHHHHHHHHTT-TT-CSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccC---CeeeeecCCCCChHHHHHHHHHhhH-hh-CCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 466666553222 2588999999999999999987632 12 44677888887764 345666666654
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.02 E-value=0.027 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999998754
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.01 E-value=0.029 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999987643
No 320
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.00 E-value=0.031 Score=49.63 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998764
No 321
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.99 E-value=0.025 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|++|+||||+++.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999765
No 322
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.96 E-value=0.034 Score=53.79 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHhcC-CCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 187 AKILDMVNTS-SDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 187 ~~l~~~L~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+.+...+... .....+.+|.|+|++|+||||+|+.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444432 22345678999999999999999999764
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.96 E-value=0.04 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=22.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+..|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.94 E-value=0.031 Score=55.80 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.4
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
...+|+|+|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34699999999999999999987654
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.94 E-value=0.025 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999765
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.93 E-value=0.025 Score=51.13 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
No 327
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.87 E-value=0.019 Score=58.19 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN 244 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 244 (661)
++++.+..-..+ .-++|+|.+|+|||+|+..+.+........+. ++++-+.+.
T Consensus 164 raID~l~PigrG---QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKG---QRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTT---CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCC---ceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 566777553322 25789999999999999998876432211233 345666554
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.86 E-value=0.02 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 329
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.82 E-value=0.029 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+++.|+|+.|+|||||+..+.....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 56899999999999999999987644
No 330
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.81 E-value=0.3 Score=50.98 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhccccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAV 228 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 228 (661)
..+++|.|+|.+|+||||++..+......
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999988766543
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.78 E-value=0.036 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988664
No 332
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.77 E-value=0.034 Score=55.57 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD 243 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 243 (661)
.+.+||+|.|-|||||||.+-.+..-....+ ..+.-++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G---kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC---CeEEEEecCC
Confidence 3568999999999999999887765433222 2355566553
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.75 E-value=0.024 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.73 E-value=0.12 Score=53.75 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.8
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+.+|.++|++|+||||++..+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 357999999999999999988876543
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.70 E-value=0.027 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998764
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.68 E-value=0.021 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=17.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999764
No 337
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.68 E-value=0.22 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998654
No 338
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.66 E-value=0.31 Score=51.84 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+++|+|+|.+|+||||++..+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999886543
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.65 E-value=0.034 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999998764
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.60 E-value=0.034 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+|+|.|++|+||||+++.+.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 341
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.60 E-value=0.036 Score=55.08 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+++|+|++|+|||||++.+..-..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45899999999999999999876543
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.59 E-value=0.034 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.58 E-value=0.034 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+|+|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.57 E-value=0.033 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 345
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.56 E-value=0.06 Score=56.98 Aligned_cols=108 Identities=9% Similarity=-0.100 Sum_probs=67.6
Q ss_pred cceEEEeeeCCCcccc---ccccccCCCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcCCCCcceeecCCCCCc
Q 006107 530 RVRHSSYGRGWLDGKN---KFEVFYEIELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDETLKKCLQFLRPKYTSE 606 (661)
Q Consensus 530 ~~r~ls~~~~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~~t~i 606 (661)
+.+++.+..+...... ....+..+++|+.|.+.++.. .......+...+.. ...+|++|+|++|.+
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i----~~~~~~~l~~~l~~-------~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL----EDAGVRELCQGLGQ-------PGSVLRVLWLADCDV 382 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC----HHHHHHHHHHHHTS-------TTCCCCEEECTTSCC
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc----ccccHHHHHHHHcC-------CCCceEEEECCCCCC
Confidence 4666666555433211 122344567888888765421 00111111111110 256899999999998
Q ss_pred c-----cccccc-cccccceeecccccccc---------cCCcccccccccccccccc
Q 006107 607 R-----EKKLSV-SIQNWNMAIWCKHTYLV---------TGSVNLNFTQFLQLSDFGT 649 (661)
Q Consensus 607 ~-----~LP~si-~L~~Lq~L~l~~c~~l~---------~LP~~i~~l~~L~~~~~~~ 649 (661)
+ .+|..+ ++++|++|++++| .+. .+|.....|+.|++.+...
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 8 799999 9999999999986 443 3676667788888777644
No 346
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.56 E-value=0.048 Score=50.23 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+..+..++... +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~i---Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGT---PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTC---TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566665431 223468999999999999998887753
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.49 E-value=0.034 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|+|.|++|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987644
No 348
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.47 E-value=0.17 Score=53.07 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHHHHH
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKALLES 257 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~ 257 (661)
+.++.|..-..++ -++|.|.+|+|||+|+..+.++.. +. +-+.++++-+.+.. ...++..++...
T Consensus 154 rvID~l~pigkGq---r~gIfgg~GvGKT~L~~~l~~~~a-~~-~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRRGG---KIGLFGGAGVGKTVLIMELINNIA-KA-HGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCTTC---CEEEEECSSSSHHHHHHHHHHHTT-TT-CSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccccCC---eEEeecCCCCCchHHHHHHHHHHH-hh-CCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3566665543232 478999999999999999987632 12 45677888887765 455666666653
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.45 E-value=0.034 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|.|.|++|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.45 E-value=0.043 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999997753
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.43 E-value=0.037 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.40 E-value=0.039 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|+|+.|+||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999854
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.40 E-value=0.042 Score=52.03 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=29.7
Q ss_pred EEEEEeccCCChHHHHHHHHhccccc---ccCCCCEEEEEEeCCCCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAV---ADSKFDVKAWVCVSDNFD 246 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~ 246 (661)
.+++|+|++|+|||||++.++..... ........+|+.....+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 58999999999999999999753211 110133577777654433
No 354
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.33 E-value=0.022 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEeccCCChHHHHHHHHhcccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999976543
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.33 E-value=0.042 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+|+|.|++|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998753
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.28 E-value=0.041 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+++|+|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999998874
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.28 E-value=0.05 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHh
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVY 223 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~ 223 (661)
.+.+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.28 E-value=0.034 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|.|.|++|+||||+++.+...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999865
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.27 E-value=0.04 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 360
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.26 E-value=0.083 Score=57.58 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=54.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHH-hhcC-
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAASDLNTLNEVQVQLK-KAVD- 280 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~l~- 280 (661)
+++.|.|++|+||||++..+.......+ ..+.+..... .....+.+.++.. ...+..+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g----~~Vl~~ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG----LEVGLCAPTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC----CeEEEecCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhh
Confidence 3788999999999999999876543222 2233333222 1122222222211 111111100000 0000
Q ss_pred ----CceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCC
Q 006107 281 ----GKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRH 321 (661)
Q Consensus 281 ----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~ 321 (661)
.+--+||+|++...+...+..+...++ .+.++|+.--.
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 122389999998877666777766554 46777776543
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.25 E-value=0.046 Score=50.33 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....+|+|+|+.|+||||+++.+.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.24 E-value=0.037 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+++|+|+.|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999987654
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.22 E-value=0.03 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+++|+|+.|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999877654
No 364
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.21 E-value=0.084 Score=53.64 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=23.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+++|+|+.|+||||+++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999877543
No 365
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.21 E-value=0.042 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 38999999999999999999764
No 366
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.17 E-value=0.05 Score=59.95 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 56899998888887777543 268899999999999999998754
No 367
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.15 E-value=0.043 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999764
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.15 E-value=0.054 Score=56.56 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcC----------CCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTS----------SDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|-++.++.|...+... .....++-+.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 45789888888877666321 001123458899999999999999998753
No 369
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.14 E-value=0.052 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|.|.|++|+||||+++.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999977543
No 370
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.14 E-value=0.22 Score=53.45 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=37.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESIT 259 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 259 (661)
.++.|.|.+|+||||||.+++.+.... +-..++|++... +..++...++....
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 488899999999999999988764322 123567776644 56677777765543
No 371
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.13 E-value=0.052 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.11 E-value=0.044 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 373
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.10 E-value=0.046 Score=52.32 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 374
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.05 E-value=0.12 Score=63.63 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=54.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHH
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLK 276 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 276 (661)
.+.+.|+|++|+|||+||.++...... .-..++|+++...++... ++.++.+.. ...+.++....+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 458999999999999999998776432 334678888888776665 334432111 2234455555555
Q ss_pred hhc-CCceEEEEEeCCC
Q 006107 277 KAV-DGKRFLLVLDDVR 292 (661)
Q Consensus 277 ~~l-~~kr~LlVlDdv~ 292 (661)
... ..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 443 2566799999984
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.99 E-value=0.066 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998764
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.97 E-value=0.057 Score=53.66 Aligned_cols=26 Identities=38% Similarity=0.374 Sum_probs=22.5
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999876543
No 377
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.93 E-value=0.034 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=15.8
Q ss_pred EEEEEeccCCChHHHHHHHHh-cc
Q 006107 203 VVIPIVGMGGIGKTTLAREVY-ND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~-~~ 225 (661)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999998 53
No 378
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.89 E-value=0.11 Score=51.91 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.6
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
....+++|+|++|+||||++..+.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999998876544
No 379
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.88 E-value=0.23 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 38999999999999999998654
No 380
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.88 E-value=0.25 Score=51.32 Aligned_cols=26 Identities=31% Similarity=0.233 Sum_probs=22.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..++.|+|++|+||||++..+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999877654
No 381
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.85 E-value=0.065 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.7
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++|+|+|+.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 382
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.82 E-value=0.051 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||++.+..-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 8999999999999999998654
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.78 E-value=0.061 Score=50.75 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568889999999999999999875
No 384
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.74 E-value=0.053 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999764
No 385
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.73 E-value=0.29 Score=51.55 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=37.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESI 258 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 258 (661)
.++.|.|.+|+||||||..++.+.... .-..++|++.. .+..++...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 488899999999999999988764322 12356777664 45667777776544
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.72 E-value=0.062 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|+|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58999999999999999999864
No 387
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.72 E-value=0.019 Score=58.93 Aligned_cols=55 Identities=9% Similarity=-0.074 Sum_probs=35.4
Q ss_pred cceeecCCCCCcccccc-----cc-cc-cccceeeccccccccc-----CCcccccc-ccccccccccc
Q 006107 595 CLQFLRPKYTSEREKKL-----SV-SI-QNWNMAIWCKHTYLVT-----GSVNLNFT-QFLQLSDFGTH 650 (661)
Q Consensus 595 ~LryL~L~~t~i~~LP~-----si-~L-~~Lq~L~l~~c~~l~~-----LP~~i~~l-~~L~~~~~~~~ 650 (661)
+|++|+|++|.|+..+. .+ .+ .+|++|+|++| .+.. +|..+..+ ++|+.++++.+
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 78888888888765443 23 34 58888888875 4665 66666543 36666666544
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.70 E-value=0.054 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988754
No 389
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.66 E-value=0.015 Score=60.01 Aligned_cols=58 Identities=7% Similarity=-0.205 Sum_probs=36.2
Q ss_pred CCCcceeecCCCCCcc-----cccccc-cccccceeecccccccc-----cCCccccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSER-----EKKLSV-SIQNWNMAIWCKHTYLV-----TGSVNLNFTQFLQLSDFGTH 650 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~-----~LP~si-~L~~Lq~L~l~~c~~l~-----~LP~~i~~l~~L~~~~~~~~ 650 (661)
.+.+|++|+|++|.|. .|+..+ ...+|++|+|++| .+. .|+..+...++|+.++++.|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 4566888888887765 356667 7778888888775 343 34444444555665555444
No 390
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.64 E-value=0.056 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999764
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.56 E-value=0.061 Score=53.96 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999764
No 392
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.55 E-value=0.058 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999764
No 393
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.55 E-value=0.058 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 38999999999999999999765
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.54 E-value=0.12 Score=52.83 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
...+.+.+.... ....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~--~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDS--GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGC--CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc--CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554322 346789999999999999999987553
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.53 E-value=0.06 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+|+|.|++|+||||+++.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999764
No 396
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.53 E-value=0.05 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||.+.++.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999764
No 397
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.52 E-value=0.059 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 38999999999999999999764
No 398
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.51 E-value=0.062 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||.+.+..-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999873
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.50 E-value=0.27 Score=51.98 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=35.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLE 256 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 256 (661)
.++.|.|.+|+|||||+..++....... -..++|++... +..++...++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSS--CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCC--CHHHHHHHHHH
Confidence 4889999999999999999987654321 22567776543 45666666553
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.49 E-value=0.065 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998754
No 401
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.49 E-value=0.061 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999764
No 402
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.47 E-value=0.059 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.47 E-value=0.053 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999765
No 404
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.46 E-value=0.085 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 405
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.45 E-value=0.076 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.208 Sum_probs=22.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..++|.|.|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999864
No 406
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.43 E-value=0.44 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988654
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.43 E-value=0.065 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=21.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.-.|+|+|++|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 347899999999999999999765
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.39 E-value=0.063 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 409
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.38 E-value=0.066 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 410
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.33 E-value=0.065 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999764
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.31 E-value=0.066 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 412
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.31 E-value=0.073 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+.|.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999765
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.29 E-value=0.051 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+|+|+|++|+||||+++.+...
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.28 E-value=0.07 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.27 E-value=0.075 Score=49.93 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.5
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|+|+|.+|+|||||+..+....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999987653
No 416
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.23 E-value=0.067 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999764
No 417
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.22 E-value=0.21 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 48999999999999999988654
No 418
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.21 E-value=0.068 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999764
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.20 E-value=0.071 Score=52.93 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEeccCCChHHHHHHHHhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 420
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.20 E-value=0.069 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||.+.+..-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999765
No 421
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.16 E-value=0.12 Score=47.92 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=53.4
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEe-CCCCCHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHhhc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCV-SDNFDVFNILKALLESITSAAS--DLNTLNEVQVQLKKAV 279 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-~~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l 279 (661)
.+..++|+.|.||||.+.....+.... .....++-.. ...+... .+.+.++.... ...+.+ .+.+.+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC---------------------CCEEECSSGG----GGGGGC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 588899999999999998877765533 2333333211 1111222 23333322211 111111 222333
Q ss_pred CCceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCCh
Q 006107 280 DGKRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHS 322 (661)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~ 322 (661)
.++--+|++|.+.-.+....+ +...+.+ .|..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~-~l~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVE-VVQVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHH-HHHHHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHH-HHHHHhh--CCCEEEEEeccc
Confidence 333349999998776544443 3333333 377999999853
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.15 E-value=0.075 Score=55.50 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999865
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.10 E-value=0.074 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|.|.|++|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.10 E-value=0.14 Score=54.00 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.2
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
...+++|+|+.|+|||||++.+.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 356999999999999999999886544
No 425
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.08 E-value=0.072 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||.+.+..-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999765
No 426
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.08 E-value=0.071 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-.|+|+|++|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999865
No 427
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.08 E-value=0.081 Score=51.31 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=53.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCCHHHHHHHHHhhcCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD-NFDVFNILKALLESITSAASDLNTLNEVQVQLKKAVDG 281 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 281 (661)
.+++|+|+.|+|||||++.+..-.... +...+++.-.. .+-.... ..+ +........ ...+...+...+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl~-~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIEDPIEYVFKHK-KSI---VNQREVGED-TKSFADALRAALRE 97 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTT-BSCHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCC---CCCEEEEcCCcceeecCCc-cee---eeHHHhCCC-HHHHHHHHHHHHhh
Confidence 589999999999999999987653321 12233322110 0000000 000 000000000 01223455555555
Q ss_pred ceEEEEEeCCCCCChhhHhhhhcccccCCCCcEEEEEeCChh
Q 006107 282 KRFLLVLDDVRNEDYSLWVDLKAPFLAAAPNSKMIITTRHSD 323 (661)
Q Consensus 282 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTr~~~ 323 (661)
.+-+|++|+..+ ......+... ...|.-|++||....
T Consensus 98 ~p~illlDEp~D--~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 98 DPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred CCCEEEeCCCCC--HHHHHHHHHH---HccCCEEEEEeCcch
Confidence 666888999873 2333332222 134667888887644
No 428
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.06 E-value=0.56 Score=49.19 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=34.9
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.++.|.|.+|+||||||.+++.+.... -..++|++... +..++...++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC--CHHHHHHHHHHH
Confidence 488999999999999999988765432 23667776543 445556665544
No 429
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.05 E-value=0.088 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999765
No 430
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.04 E-value=0.043 Score=60.25 Aligned_cols=52 Identities=13% Similarity=-0.070 Sum_probs=23.4
Q ss_pred CCCcceeecCCCCC--c--ccccccc-cccccceeecccccccccCCcccccccccc
Q 006107 592 LKKCLQFLRPKYTS--E--REKKLSV-SIQNWNMAIWCKHTYLVTGSVNLNFTQFLQ 643 (661)
Q Consensus 592 ~L~~LryL~L~~t~--i--~~LP~si-~L~~Lq~L~l~~c~~l~~LP~~i~~l~~L~ 643 (661)
.+.+|++|+|++|. + ..++.-+ ++++|++|++++|..+..+|..+.++++|+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcce
Confidence 34455555555553 1 1222233 445555555555544444444443333333
No 431
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.03 E-value=0.073 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999998754
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.03 E-value=0.073 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+++|+|+.|+|||||.+.++.-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999997653
No 433
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.01 E-value=0.077 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 48999999999999999998754
No 434
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.01 E-value=0.13 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 435
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.96 E-value=0.1 Score=50.55 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
....++.+.|.||+||||++..+.....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999975433
No 436
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.92 E-value=0.052 Score=59.60 Aligned_cols=57 Identities=12% Similarity=-0.152 Sum_probs=41.3
Q ss_pred CCCcceeecCCCCCcccccccc-cccccceeeccccccc---ccCCccccccccccccccc
Q 006107 592 LKKCLQFLRPKYTSEREKKLSV-SIQNWNMAIWCKHTYL---VTGSVNLNFTQFLQLSDFG 648 (661)
Q Consensus 592 ~L~~LryL~L~~t~i~~LP~si-~L~~Lq~L~l~~c~~l---~~LP~~i~~l~~L~~~~~~ 648 (661)
++.+|++|+|++|.+..+|..+ ++.+|+.|+++++... ...+..+..+++|+.+++.
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence 6678889999998888888888 8999999998754332 3445566666666655543
No 437
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.87 E-value=0.09 Score=52.40 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC
Q 006107 199 HANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN 244 (661)
Q Consensus 199 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 244 (661)
....++|+|+|-||+||||+|..+.......+ ..++-|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG---KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEeCCCC
Confidence 34567899999999999999988876544222 24566666543
No 438
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.81 E-value=0.35 Score=47.74 Aligned_cols=90 Identities=18% Similarity=0.088 Sum_probs=46.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhccCC---CCCCCHHHHHHHHHh
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDN-FDVFNILKALLESITSAA---SDLNTLNEVQVQLKK 277 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~---~~~~~~~~l~~~l~~ 277 (661)
..+++++|++|+||||++..+.......+ ..+.++..... ....+.+.......+... ....+...+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876544222 23455554422 223333444444332211 111233333322222
Q ss_pred hcC-CceEEEEEeCCCCC
Q 006107 278 AVD-GKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l~-~kr~LlVlDdv~~~ 294 (661)
.+. +.-=++++|-.-..
T Consensus 175 ~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHTTCSEEEEECCCSC
T ss_pred HHHhCCCCEEEEeCCCCc
Confidence 332 22237788875443
No 439
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.098 Score=47.79 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=21.1
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999999865
No 440
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.67 E-value=0.092 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458899999999999999997653
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.63 E-value=0.086 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|+.|+|||||++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998764
No 442
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.61 E-value=0.091 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.++|+|+.|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.61 E-value=0.044 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.4
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.55 E-value=0.091 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.++.|+|++|+|||||+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999999988754
No 445
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.55 E-value=0.2 Score=51.25 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 177 HEVFGREEDKAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 177 ~~~vGR~~e~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
..++|....+.++...+..-.. ... .+.|.|.+|+||+++|+.+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-~~~-~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-SKA-PVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-SCS-CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc-cch-hheEEeCCCchHHHHHHHHHHhc
Confidence 3578887777776666543221 112 36699999999999999987653
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.52 E-value=0.091 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999765
No 447
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.51 E-value=0.092 Score=52.00 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=32.7
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLES 257 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 257 (661)
.+++|.|++|+|||||++.++....... -..++|++... +..++...+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3899999999999999999887644221 11455665432 344444444433
No 448
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.47 E-value=0.093 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
--|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999765
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.46 E-value=0.11 Score=49.26 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+|+|.|++|+||||+++.+.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999987654
No 450
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.46 E-value=0.37 Score=51.09 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCH-HHHHHHH
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDV-FNILKAL 254 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i 254 (661)
++++.|..-..+ .-++|.|.+|+|||+|++.+.+.. +-+.++++-+.+.... .+++.++
T Consensus 216 rvID~l~PigkG---qr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKG---GTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETT---CEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccC---CeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 466666553222 258899999999999999987641 4467888888876654 4555554
No 451
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=91.42 E-value=0.079 Score=54.14 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=16.6
Q ss_pred CcceEEEeeeCCCcccccccccc--CCCCceEEeec
Q 006107 529 ERVRHSSYGRGWLDGKNKFEVFY--EIELLRTFLPF 562 (661)
Q Consensus 529 ~~~r~ls~~~~~~~~~~~~~~~~--~~~~LrsL~~~ 562 (661)
.+.++|.+..+..... ....+. ++++|++|.++
T Consensus 193 ~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEe
Confidence 4566776655443211 122222 56777777654
No 452
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.36 E-value=0.096 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
+++|+|+.|+|||||.+.++.-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999764
No 453
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.32 E-value=0.22 Score=51.75 Aligned_cols=102 Identities=14% Similarity=0.247 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-CCCCEEEEEEeCCCC-CHHHHHHHHHHHh--cc---
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-SKFDVKAWVCVSDNF-DVFNILKALLESI--TS--- 260 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~-~~~~~~~~il~~l--~~--- 260 (661)
+.++.|..-..++ -++|.|.+|+|||+|+..+.+.....+ +.-..++++-+.+.. .+.++..++...- ..
T Consensus 140 raID~l~pigrGQ---r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvv 216 (465)
T 3vr4_D 140 SAIDHLNTLVRGQ---KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVM 216 (465)
T ss_dssp HHHHTTSCCBTTC---BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEE
T ss_pred eEEecccccccCC---EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEE
Confidence 3555554433222 367899999999999999988754311 011156677676543 4456666654431 10
Q ss_pred --CCCCCCCHHHH-----HHHHHhhc---CCceEEEEEeCCC
Q 006107 261 --AASDLNTLNEV-----QVQLKKAV---DGKRFLLVLDDVR 292 (661)
Q Consensus 261 --~~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv~ 292 (661)
...+....... ...+.+++ .++.+||++||+-
T Consensus 217 V~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 217 FMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111211111 11233443 3789999999983
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.29 E-value=0.21 Score=51.79 Aligned_cols=102 Identities=13% Similarity=0.257 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccccccc-------CCCC-EEEEEEeCCCC-CHHHHHHHHHHH-
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVAD-------SKFD-VKAWVCVSDNF-DVFNILKALLES- 257 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~v~~~~-~~~~~~~~il~~- 257 (661)
+.++.|..-..++ -++|.|.+|+|||+|+..+.+.....+ .+-+ .++++-+.+.. .+.++..++...
T Consensus 136 raID~l~pigrGQ---r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g 212 (464)
T 3gqb_B 136 STIDVMNTLVRGQ---KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTG 212 (464)
T ss_dssp HHHHTTSCCBTTC---BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTS
T ss_pred eeeecccccccCC---EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcc
Confidence 3555554433222 467899999999999999988754310 0112 56677776543 445555554432
Q ss_pred -hcc-----CCCCCCCHHHH-----HHHHHhhc---CCceEEEEEeCCC
Q 006107 258 -ITS-----AASDLNTLNEV-----QVQLKKAV---DGKRFLLVLDDVR 292 (661)
Q Consensus 258 -l~~-----~~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv~ 292 (661)
+.. ...+....... ...+.+++ .++.+||++||+-
T Consensus 213 ~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 213 ALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 100 11122222221 11233343 3789999999984
No 455
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.24 E-value=0.23 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||++.+..-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999664
No 456
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.23 E-value=0.11 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 457
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.20 E-value=0.099 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998654
No 458
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.18 E-value=0.11 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=23.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
.+.+|+|+|++|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999998877644
No 459
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.12 E-value=0.11 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.087 Sum_probs=21.3
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..+++|+|++|+|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999864
No 460
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=91.08 E-value=0.25 Score=49.58 Aligned_cols=50 Identities=10% Similarity=-0.103 Sum_probs=24.3
Q ss_pred CCCcce-eecCCCCCccccccc-c-cccccceeecccccccccCCcc-cccccccc
Q 006107 592 LKKCLQ-FLRPKYTSEREKKLS-V-SIQNWNMAIWCKHTYLVTGSVN-LNFTQFLQ 643 (661)
Q Consensus 592 ~L~~Lr-yL~L~~t~i~~LP~s-i-~L~~Lq~L~l~~c~~l~~LP~~-i~~l~~L~ 643 (661)
.+..|+ .|+|.. .++.+++. + .+.+|++|++++ ..+..+|.+ +..+.+|+
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCC
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchh
Confidence 555555 555555 45555432 3 555555555543 345555543 33344443
No 461
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.04 E-value=0.12 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.2
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||+..+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999998643
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.04 E-value=0.11 Score=49.48 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 200 ANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 200 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34458999999999999999998764
No 463
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.02 E-value=0.14 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.9
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999764
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.02 E-value=0.12 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998753
No 465
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.01 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999997653
No 466
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.00 E-value=0.2 Score=48.27 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcc
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+..|+.... +....+.++|++|.|||.+|..+.+.
T Consensus 92 ~l~~~l~~~~--~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKF--GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCS--TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4556664421 22346899999999999999999874
No 467
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.99 E-value=0.14 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999875
No 468
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.12 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 469
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.94 E-value=0.11 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHhccc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
.+++|+|+.|+|||||.+.+..-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 389999999999999999997653
No 470
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.93 E-value=0.11 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998765
No 471
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.92 E-value=0.29 Score=60.24 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=56.6
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|+|++|+||||||.+++..... .-..++|++....++... ++.++.... +..+.+++...+..
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 48999999999999999999876542 224678998887776542 444443221 23456666666554
Q ss_pred hc-CCceEEEEEeCCCCC
Q 006107 278 AV-DGKRFLLVLDDVRNE 294 (661)
Q Consensus 278 ~l-~~kr~LlVlDdv~~~ 294 (661)
.. ..+.-+||+|-+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 43 245569999998654
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.89 E-value=0.12 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
++|+|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999764
No 473
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.88 E-value=0.11 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998765
No 474
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.88 E-value=0.11 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999765
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.86 E-value=0.27 Score=59.72 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccCCC-----CCCCHHHHHHHHHh
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSAAS-----DLNTLNEVQVQLKK 277 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 277 (661)
.++.|.|++|+||||||.+++.. ... .-..++|++....++... ++.++.... ...+.+++...+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~--~~~-~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQR-EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHH-TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHH-hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred hc-CCceEEEEEeCC
Q 006107 278 AV-DGKRFLLVLDDV 291 (661)
Q Consensus 278 ~l-~~kr~LlVlDdv 291 (661)
.. ..+.-+||+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 476
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.84 E-value=0.26 Score=46.85 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=26.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEE
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWV 239 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 239 (661)
.+|.|.|+.|+||||+++.+.+..... .+..+...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeee
Confidence 489999999999999999998876533 45533333
No 477
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.83 E-value=0.12 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999765
No 478
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=90.81 E-value=0.27 Score=49.31 Aligned_cols=73 Identities=10% Similarity=-0.096 Sum_probs=53.3
Q ss_pred CCCceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcC---CCCcceeecCCCCCcccccccc--cccccc-eeecccc
Q 006107 553 IELLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDET---LKKCLQFLRPKYTSEREKKLSV--SIQNWN-MAIWCKH 626 (661)
Q Consensus 553 ~~~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~---~L~~LryL~L~~t~i~~LP~si--~L~~Lq-~L~l~~c 626 (661)
+++|+++.+.+. .+..+|+. .+.+|+.|+|..+ ++.+|+.. .+.+|+ .|++.+
T Consensus 225 ~~~L~~l~L~~n-------------------~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 225 MPNLVSLDISKT-------------------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp CTTCCEEECTTB-------------------CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred cCCCeEEECCCC-------------------CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 677888876542 34556665 7788888888887 88888765 888888 888875
Q ss_pred cccccCCcc-cccccccccccc
Q 006107 627 TYLVTGSVN-LNFTQFLQLSDF 647 (661)
Q Consensus 627 ~~l~~LP~~-i~~l~~L~~~~~ 647 (661)
.+..++.+ +..+.+|+.+++
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEE
T ss_pred -cceEEchhhhhCCccCCEEEe
Confidence 67777754 567777776666
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.79 E-value=0.12 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 480
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.79 E-value=0.59 Score=49.77 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCC-CHHHHHHHH
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNF-DVFNILKAL 254 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i 254 (661)
+.++.|..-..+ .-++|.|.+|+|||+|+..+.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 221 rvID~l~PigrG---qr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKG---GAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTT---CEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCC---CEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 466766553322 257899999999999999998752 34577888777653 344444443
No 481
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.78 E-value=0.12 Score=46.94 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
--|+|+|.+|+|||||+..+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999765
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.78 E-value=0.18 Score=50.02 Aligned_cols=33 Identities=15% Similarity=0.425 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhccc
Q 006107 186 KAKILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
+++|.+.+.. .+++|+|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G-------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG-------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT-------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC-------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5566666532 378999999999999999998 53
No 483
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.78 E-value=0.12 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHhccc
Q 006107 204 VIPIVGMGGIGKTTLAREVYNDK 226 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~~ 226 (661)
-|+|+|.+|+|||||...+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999997653
No 484
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.77 E-value=0.12 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcc
Q 006107 203 VVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
.+++|+|+.|+|||||.+.+.--
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 38999999999999999999653
No 485
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.77 E-value=0.13 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 486
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.73 E-value=0.12 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999887665
No 487
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.73 E-value=0.12 Score=51.89 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.3
Q ss_pred CeEEEEEeccCCChHHHHHHHHhcc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999854
No 488
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.70 E-value=0.13 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEeccCCChHHHHHHHHhc
Q 006107 204 VIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~ 224 (661)
+.+|+|+.|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999998854
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.64 E-value=0.26 Score=46.30 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.0
Q ss_pred CeEEEEEeccCCChHHHHHHHHhccccc
Q 006107 201 NFVVIPIVGMGGIGKTTLAREVYNDKAV 228 (661)
Q Consensus 201 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 228 (661)
...+|.|.|+.|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999887553
No 490
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.62 E-value=0.15 Score=50.50 Aligned_cols=26 Identities=31% Similarity=0.233 Sum_probs=22.2
Q ss_pred eEEEEEeccCCChHHHHHHHHhcccc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYNDKA 227 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 227 (661)
..+++|+|++|+||||++..++....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999887644
No 491
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.62 E-value=0.12 Score=46.36 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.8
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 492
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.62 E-value=1.2 Score=56.98 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCCCCCHHHHHHHHHHHhccC------------CCCCCCHHHHH
Q 006107 205 IPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSDNFDVFNILKALLESITSA------------ASDLNTLNEVQ 272 (661)
Q Consensus 205 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~------------~~~~~~~~~l~ 272 (661)
+.++|++|+|||++|+.+... ..-...+.++.+...+...+...+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~-----~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~---------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRN-----SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD---------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHS-----CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS----------
T ss_pred EEEECCCCCCHHHHHHHHHhc-----CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC----------
Q ss_pred HHHHhhcCCceEEEEEeCCCCCChh------hHhhhhcccccCC------------CCcEEEEEeCChh-------hhcc
Q 006107 273 VQLKKAVDGKRFLLVLDDVRNEDYS------LWVDLKAPFLAAA------------PNSKMIITTRHSD-------VAST 327 (661)
Q Consensus 273 ~~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTTr~~~-------v~~~ 327 (661)
+++.++++||+.-.... ..+.++..+..++ .+..+|.++.... -.+.
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred cCCCceeecCCCChHhHHHHHHHhh
Q 006107 328 MGPIEHYNLKSLLDDDCWSIFIKHA 352 (661)
Q Consensus 328 ~~~~~~~~l~~L~~~e~~~Lf~~~~ 352 (661)
......+.+...+.++-..+|....
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHH
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHH
No 493
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.62 E-value=0.13 Score=49.13 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=27.5
Q ss_pred EEEEEeccCCChHHHHHHHHhcccccccCCCCEEEEEEeCC
Q 006107 203 VVIPIVGMGGIGKTTLAREVYNDKAVADSKFDVKAWVCVSD 243 (661)
Q Consensus 203 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 243 (661)
.++.|.|++|+|||||+.+++..... .-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 48999999999999999887655321 223567776544
No 494
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.60 E-value=0.16 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..-|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999865
No 495
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.59 E-value=0.13 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=20.6
Q ss_pred eEEEEEeccCCChHHHHHHHHhcc
Q 006107 202 FVVIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 202 ~~vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999764
No 496
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=90.58 E-value=0.13 Score=52.59 Aligned_cols=110 Identities=7% Similarity=-0.054 Sum_probs=64.2
Q ss_pred CCcceEEEeeeCCCcccccc----ccccCCC-CceEEeeccccCCCCCchhhHhhHhhhhcCCcccCcCCCCcceeecCC
Q 006107 528 FERVRHSSYGRGWLDGKNKF----EVFYEIE-LLRTFLPFCIRGGPNTSYLRMEAWSGVFGNISAVDETLKKCLQFLRPK 602 (661)
Q Consensus 528 ~~~~r~ls~~~~~~~~~~~~----~~~~~~~-~LrsL~~~~~~~~~~~~~~~~~~l~~~~~~l~~lP~~~L~~LryL~L~ 602 (661)
+.+.+++.+..+...... . ..+..++ +|++|.+.++... ......+...+.. ...+|++|+|+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~-------~~~~L~~L~Ls 88 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSIS-TVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAA-------IPANVTSLNLS 88 (362)
T ss_dssp CTTCCEEECTTSCGGGSC-HHHHHHHHHTCCTTCCEEECCSSCGG----GSCHHHHHHHHHT-------SCTTCCEEECC
T ss_pred CCCceEEEccCCCCChHH-HHHHHHHHHhCCCceeEEECcCCCCC----HHHHHHHHHHHhc-------cCCCccEEECc
Confidence 345777777665543321 2 3455666 7888888765321 0011111111110 12789999999
Q ss_pred CCCccccccc-----c-cc-cccceeecccccccccCCcc-c----cc-cccccccccccc
Q 006107 603 YTSEREKKLS-----V-SI-QNWNMAIWCKHTYLVTGSVN-L----NF-TQFLQLSDFGTH 650 (661)
Q Consensus 603 ~t~i~~LP~s-----i-~L-~~Lq~L~l~~c~~l~~LP~~-i----~~-l~~L~~~~~~~~ 650 (661)
+|.++..+.. + .+ .+|++|++++| .+...+.. + .. .++|+.++++.+
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 9998865543 4 44 89999999986 57776652 2 22 246666666544
No 497
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.58 E-value=0.17 Score=52.80 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHHHHHhcccccccC-CCCEEEEEEeCCCC-CHHHHHHHHHHHhcc-----
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLAREVYNDKAVADS-KFDVKAWVCVSDNF-DVFNILKALLESITS----- 260 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~-~~~~~~~~il~~l~~----- 260 (661)
+.++.|..-..++ -++|.|.+|+|||+|+..++++....+. .-+.++++-+.+.. .+.++..++...-..
T Consensus 141 r~ID~l~pigrGQ---r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvv 217 (469)
T 2c61_A 141 STIDGTNTLVRGQ---KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVV 217 (469)
T ss_dssp HHHHTTSCCBTTC---BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEE
T ss_pred EeeeeeeccccCC---EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEE
Confidence 3566665433232 4678899999999999999887554210 11356677676553 455666666543111
Q ss_pred --CCCCCCCHHH-----HHHHHHhhc---CCceEEEEEeCC
Q 006107 261 --AASDLNTLNE-----VQVQLKKAV---DGKRFLLVLDDV 291 (661)
Q Consensus 261 --~~~~~~~~~~-----l~~~l~~~l---~~kr~LlVlDdv 291 (661)
...+...... ....+.+++ +++.+||++||+
T Consensus 218 V~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 218 FLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111111 111223333 379999999997
No 498
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.56 E-value=0.13 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEEEeccCCChHHHHHHHHhcc
Q 006107 204 VIPIVGMGGIGKTTLAREVYND 225 (661)
Q Consensus 204 vi~I~G~~GiGKTtLa~~v~~~ 225 (661)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 499
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.55 E-value=0.4 Score=50.36 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCeEEEEEeccCCChHHHHH-HHHhcccccccCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhcc----
Q 006107 188 KILDMVNTSSDHANFVVIPIVGMGGIGKTTLA-REVYNDKAVADSKFD-VKAWVCVSDNF-DVFNILKALLESITS---- 260 (661)
Q Consensus 188 ~l~~~L~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l~~---- 260 (661)
+.++.|..-..++ -++|.|.+|+|||+|| ..+.+.. ..+ .++++-+.+.. .+.++...+...-..
T Consensus 164 raID~l~PigrGQ---R~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 164 KAIDSMIPIGRGQ---RELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHHSCEETTC---BEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred cccccccccccCC---EEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 4566665433222 4789999999999995 5676652 234 35777777654 345556665542111
Q ss_pred ---CCCCCCCHHHH-----HHHHHhhc--CCceEEEEEeCCC
Q 006107 261 ---AASDLNTLNEV-----QVQLKKAV--DGKRFLLVLDDVR 292 (661)
Q Consensus 261 ---~~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv~ 292 (661)
...+....... ...+.+++ +++.+||++||+-
T Consensus 236 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 236 VVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11111111111 11122222 5899999999983
No 500
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.54 E-value=0.68 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCeEEEEEeccCCChHHHHHHHHhc
Q 006107 199 HANFVVIPIVGMGGIGKTTLAREVYN 224 (661)
Q Consensus 199 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 224 (661)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35678999999999999999998875
Done!