Your job contains 1 sequence.
>006108
MVVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEV
YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD
KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL
DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG
EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT
LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS
GWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYS
TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQN
KPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLL
PLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSD
QIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN
R
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006108
(661 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156309 - symbol:POLH "Y-family DNA polymerase... 1526 3.9e-166 2
ZFIN|ZDB-GENE-060421-4949 - symbol:polh "polymerase (DNA ... 653 4.7e-64 1
UNIPROTKB|E2RC81 - symbol:POLH "Uncharacterized protein" ... 608 2.0e-61 2
UNIPROTKB|F1NAG6 - symbol:POLH "Uncharacterized protein" ... 607 3.5e-59 1
UNIPROTKB|F1NCM3 - symbol:POLH "Uncharacterized protein" ... 607 3.5e-59 1
UNIPROTKB|F1RRJ6 - symbol:POLH "Uncharacterized protein" ... 579 2.9e-58 2
RGD|1309893 - symbol:Polh "polymerase (DNA directed), eta... 588 3.6e-57 1
UNIPROTKB|Q9Y253 - symbol:POLH "DNA polymerase eta" speci... 583 1.2e-56 1
MGI|MGI:1891457 - symbol:Polh "polymerase (DNA directed),... 581 2.0e-56 1
UNIPROTKB|F1MZ79 - symbol:POLH "Uncharacterized protein" ... 561 2.3e-56 2
UNIPROTKB|B4DG64 - symbol:POLH "DNA polymerase eta" speci... 576 6.8e-56 1
FB|FBgn0037141 - symbol:DNApol-eta "DNApol-eta" species:7... 554 5.8e-53 1
WB|WBGene00018721 - symbol:polh-1 species:6239 "Caenorhab... 416 2.3e-37 1
UNIPROTKB|G5EH81 - symbol:MGCH7_ch7g688 "Sister chromatid... 309 2.1e-24 1
ASPGD|ASPL0000072145 - symbol:AN4678 species:162425 "Emer... 303 9.8e-24 1
POMBASE|SPBC16A3.11 - symbol:eso1 "sister chromatid cohes... 285 1.6e-21 1
UNIPROTKB|Q47155 - symbol:dinB species:83333 "Escherichia... 202 1.1e-17 2
CGD|CAL0002818 - symbol:RAD32 species:5476 "Candida albic... 237 1.7e-16 1
ZFIN|ZDB-GENE-050417-376 - symbol:poli "polymerase (DNA d... 191 2.2e-16 3
UNIPROTKB|J3KSW2 - symbol:POLI "DNA polymerase iota" spec... 169 2.2e-15 3
UNIPROTKB|Q83EN5 - symbol:dinP "DNA polymerase IV" specie... 186 3.5e-15 2
TIGR_CMR|CBU_0280 - symbol:CBU_0280 "DNA-damage-inducible... 186 3.5e-15 2
UNIPROTKB|Q9UNA4 - symbol:POLI "DNA polymerase iota" spec... 169 4.2e-15 3
TAIR|locus:2156319 - symbol:REV1 species:3702 "Arabidopsi... 202 6.0e-15 3
UNIPROTKB|I3LUT8 - symbol:LOC100737500 "Uncharacterized p... 191 4.7e-14 1
UNIPROTKB|F1PDA5 - symbol:POLI "Uncharacterized protein" ... 179 7.7e-13 3
UNIPROTKB|J3KTN3 - symbol:POLI "DNA polymerase iota" spec... 138 1.8e-12 2
UNIPROTKB|Q8EHU9 - symbol:dinB "DNA polymerase IV" specie... 162 3.5e-12 2
TIGR_CMR|SO_1114 - symbol:SO_1114 "DNA-damage-inducible p... 162 3.5e-12 2
UNIPROTKB|F1NCT8 - symbol:POLK "Uncharacterized protein" ... 205 5.1e-12 2
RGD|1305212 - symbol:Poli "polymerase (DNA directed), iot... 163 5.3e-12 2
TIGR_CMR|CHY_1651 - symbol:CHY_1651 "DNA polymerase IV - ... 190 5.5e-12 2
UNIPROTKB|G3V8W7 - symbol:Polk "Protein Polk" species:101... 170 1.0e-11 3
UNIPROTKB|F1MHR0 - symbol:POLI "Uncharacterized protein" ... 173 1.4e-11 2
FB|FBgn0037554 - symbol:DNApol-iota "DNApol-iota" species... 173 1.4e-11 3
UNIPROTKB|Q9KPS5 - symbol:dinB "DNA polymerase IV" specie... 158 1.7e-11 2
TIGR_CMR|VC_2287 - symbol:VC_2287 "DNA-damage-inducible p... 158 1.7e-11 2
UNIPROTKB|F1NCT7 - symbol:POLK "Uncharacterized protein" ... 190 1.7e-11 1
UNIPROTKB|E2RAS5 - symbol:POLK "Uncharacterized protein" ... 171 2.6e-11 2
UNIPROTKB|Q5JTF2 - symbol:POLH "DNA polymerase eta" speci... 165 2.9e-11 1
ASPGD|ASPL0000012133 - symbol:AN3909 species:162425 "Emer... 185 5.0e-11 3
UNIPROTKB|J9P5L3 - symbol:POLK "Uncharacterized protein" ... 168 5.2e-11 2
UNIPROTKB|Q81M86 - symbol:dinB "DNA polymerase IV" specie... 143 6.5e-11 2
TIGR_CMR|BA_4366 - symbol:BA_4366 "DNA-damage-inducible p... 143 6.5e-11 2
MGI|MGI:1349767 - symbol:Polk "polymerase (DNA directed),... 170 8.4e-11 3
UNIPROTKB|F1S2I2 - symbol:POLK "Uncharacterized protein" ... 168 9.8e-11 3
TIGR_CMR|CPS_1040 - symbol:CPS_1040 "DNA polymerase IV" s... 138 1.0e-10 2
UNIPROTKB|Q71Y46 - symbol:dinB "DNA polymerase IV" specie... 163 1.5e-10 2
UNIPROTKB|D6RAE5 - symbol:POLK "DNA polymerase kappa" spe... 152 1.9e-10 2
UNIPROTKB|Q5Q9G8 - symbol:POLK "Polymerase kappa isoform ... 160 2.3e-10 2
UNIPROTKB|Q9UBT6 - symbol:POLK "DNA polymerase kappa" spe... 160 3.1e-10 2
UNIPROTKB|Q5Q9G5 - symbol:POLK "DNA polymerase kappa" spe... 152 3.5e-10 2
UNIPROTKB|Q5Q9G7 - symbol:POLK "DNA polymerase kappa" spe... 152 4.2e-10 2
TAIR|locus:2031050 - symbol:AT1G49980 species:3702 "Arabi... 168 5.8e-10 2
UNIPROTKB|A6QNV6 - symbol:POLK "Uncharacterized protein" ... 162 1.6e-09 2
UNIPROTKB|Q74CQ6 - symbol:dinB "DNA polymerase IV" specie... 156 2.8e-09 2
TIGR_CMR|GSU_1616 - symbol:GSU_1616 "ImpB/MucB/SamB famil... 156 2.8e-09 2
UNIPROTKB|Q8AWW1 - symbol:DINB1 "Uncharacterized protein"... 179 3.4e-09 2
POMBASE|SPBC1347.01c - symbol:rev1 "deoxycytidyl transfer... 159 3.7e-09 3
UNIPROTKB|F1MAB3 - symbol:Polk "Protein Polk" species:101... 170 5.6e-09 2
UNIPROTKB|J3KRG0 - symbol:POLI "DNA polymerase iota" spec... 97 6.0e-09 2
POMBASE|SPCC553.07c - symbol:kpa1 "DinB translesion DNA r... 149 6.2e-09 2
UNIPROTKB|F1STE9 - symbol:REV1 "Uncharacterized protein" ... 143 6.4e-09 3
MGI|MGI:1347081 - symbol:Poli "polymerase (DNA directed),... 153 7.0e-09 2
UNIPROTKB|F1P5H4 - symbol:REV1 "DNA repair protein REV1" ... 140 1.3e-08 3
UNIPROTKB|Q4KWZ7 - symbol:REV1 "DNA repair protein REV1" ... 140 1.3e-08 3
ZFIN|ZDB-GENE-081105-180 - symbol:si:dkey-57a22.7 "si:dke... 152 2.4e-08 3
UNIPROTKB|P63987 - symbol:dinB2 "DNA polymerase IV 2" spe... 157 2.8e-08 1
UNIPROTKB|E2RPL9 - symbol:REV1 "Uncharacterized protein" ... 145 3.1e-08 3
UNIPROTKB|P63985 - symbol:dinB1 "DNA polymerase IV 1" spe... 158 4.2e-08 1
UNIPROTKB|Q74H50 - symbol:dinB "DNA polymerase IV" specie... 157 4.2e-08 1
TIGR_CMR|GSU_0043 - symbol:GSU_0043 "ImpB/MucB/SamB famil... 157 4.2e-08 1
UNIPROTKB|E9PST4 - symbol:Polk "Protein Polk" species:101... 132 8.6e-08 3
UNIPROTKB|F1N787 - symbol:REV1 "Uncharacterized protein" ... 144 8.7e-08 3
UNIPROTKB|D6R9M8 - symbol:POLK "DNA polymerase kappa" spe... 129 9.2e-08 2
UNIPROTKB|Q9UBZ9 - symbol:REV1 "DNA repair protein REV1" ... 143 1.0e-07 3
ZFIN|ZDB-GENE-060526-137 - symbol:polk "polymerase (DNA d... 158 1.1e-07 1
FB|FBgn0035150 - symbol:Rev1 "Rev1" species:7227 "Drosoph... 147 2.2e-07 3
SGD|S000002827 - symbol:RAD30 "DNA polymerase eta, involv... 92 3.8e-07 3
UNIPROTKB|E9PST3 - symbol:Polk "Protein Polk" species:101... 126 4.1e-07 3
RGD|1306715 - symbol:Rev1 "REV1, polymerase (DNA directed... 138 1.2e-06 3
MGI|MGI:1929074 - symbol:Rev1 "REV1 homolog (S. cerevisia... 139 1.3e-06 3
UNIPROTKB|Q0BZW2 - symbol:dinB "DNA polymerase IV" specie... 128 3.1e-06 2
ASPGD|ASPL0000039840 - symbol:AN3373 species:162425 "Emer... 141 4.6e-06 1
ASPGD|ASPL0000030996 - symbol:AN5620 species:162425 "Emer... 134 9.1e-06 2
TIGR_CMR|SPO_3280 - symbol:SPO_3280 "DNA polymerase IV, p... 136 1.1e-05 2
UNIPROTKB|J3QR36 - symbol:POLI "DNA polymerase iota" spec... 91 3.8e-05 2
UNIPROTKB|Q81NC2 - symbol:BAS3053 "ImpB/mucB/samB family ... 124 5.5e-05 2
TIGR_CMR|BA_3288 - symbol:BA_3288 "impB/mucB/samB family ... 124 5.5e-05 2
UNIPROTKB|Q3ZAI3 - symbol:dinB "DNA polymerase IV" specie... 121 0.00011 2
TIGR_CMR|DET_0011 - symbol:DET_0011 "DNA polymerase IV, p... 121 0.00011 2
WB|WBGene00017696 - symbol:polk-1 species:6239 "Caenorhab... 134 0.00014 2
CGD|CAL0001748 - symbol:orf19.4412 species:5476 "Candida ... 135 0.00014 3
DICTYBASE|DDB_G0287149 - symbol:DDB_G0287149 "UMUC-like D... 108 0.00020 2
UNIPROTKB|J3KQ09 - symbol:POLI "DNA polymerase iota" spec... 89 0.00028 3
>TAIR|locus:2156309 [details] [associations]
symbol:POLH "Y-family DNA polymerase H" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0042732 "D-xylose metabolic process" evidence=RCA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:CP002688
GO:GO:0003684 GO:GO:0010224 GO:GO:0003887 GO:GO:0042276
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AJ416380 IPI:IPI00537089
RefSeq:NP_568638.2 UniGene:At.19023 SMR:Q8H2D5 IntAct:Q8H2D5
STRING:Q8H2D5 EnsemblPlants:AT5G44740.2 GeneID:834503
KEGG:ath:AT5G44740 TAIR:At5g44740 InParanoid:Q8H2D5 OMA:CPLRYGT
ProtClustDB:CLSN2680435 Genevestigator:Q8H2D5 Uniprot:Q8H2D5
Length = 672
Score = 1526 (542.2 bits), Expect = 3.9e-166, Sum P(2) = 3.9e-166
Identities = 322/559 (57%), Positives = 387/559 (69%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDK
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTL
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTL 363
Query: 302 HXXXXXXXXXXXXXXXXXXXCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
H CP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 364 HASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLET 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYS 420
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE S
Sbjct: 424 WRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSA---DGCVQGNVAMTASASEGCS 480
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP-SCXXXXXXXXXXXXXXLDQ 479
STE Q +P + +++ + + + + D SC +
Sbjct: 481 EQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVSTQS---ES 537
Query: 480 NKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETL 539
NK ++ + + K N + K ++G SI++ FK+ + + S +T+ T+
Sbjct: 538 NK-----GTQTKKIGRKMNNSKEK-----NRGMPSIVDIFKNYNATPPS-KQETQEDSTV 586
Query: 540 LPLGD---CLSESNKKQVN 555
S S+ QVN
Sbjct: 587 SSASKRAKLSSSSHNSQVN 605
Score = 112 (44.5 bits), Expect = 3.9e-166, Sum P(2) = 3.9e-166
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 563 NSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVID 622
N+T E+ ++ + A+ +++S ++ + + + R W + +EID SV D
Sbjct: 571 NATPPSKQETQEDSTVSSASKRAKLSSSSHNS-QVNQEVEESRETDWGYKTDEIDQSVFD 629
Query: 623 ELPKEIQDEIQAWLRPSKRPHRVKQ---GFT--IADYFSP 657
ELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 630 ELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669
>ZFIN|ZDB-GENE-060421-4949 [details] [associations]
symbol:polh "polymerase (DNA directed), eta"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 ZFIN:ZDB-GENE-060421-4949 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AL929536 IPI:IPI00758987 Ensembl:ENSDART00000139589
OMA:MKSLEKH ArrayExpress:F1Q7Z9 Bgee:F1Q7Z9 Uniprot:F1Q7Z9
Length = 749
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 156/410 (38%), Positives = 230/410 (56%)
Query: 5 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 64
+M D+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAYMDL 121
Query: 65 TDAAEAMLAETPPESLDEVDEEALKS-HILGLESKDGN-----DSK--ATVKEWL----C 112
T + + L T S+ ++ + LK+ HI G ++ N D++ A +++WL
Sbjct: 122 TASVQERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSS 178
Query: 113 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
++ D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P
Sbjct: 179 STESSPADLRLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLP 238
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
SSV L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG WL+
Sbjct: 239 LSSVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLY 298
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
++ RGI E V+ R LPKS G K+F G L+T VQ+WL+QL EL ERL D + N
Sbjct: 299 DLCRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVN 358
Query: 293 KRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 351
R+A LT+ C L RY K+ D+ + ++
Sbjct: 359 GRVARQLTV----GVRQAGGQRSGSFSRCCALVRYDAMKMTNDSLTIIKS---------- 404
Query: 352 VKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 399
+ T G+H W +T L +SASK S + + + F D S S+
Sbjct: 405 LNTAGAHQEAWSPALTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQ 454
>UNIPROTKB|E2RC81 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0006301 "postreplication repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0003887
GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:AAEX03008345 RefSeq:XP_532150.2
Ensembl:ENSCAFT00000003028 GeneID:474915 KEGG:cfa:474915
NextBio:20850851 Uniprot:E2RC81
Length = 712
Score = 608 (219.1 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 154/408 (37%), Positives = 214/408 (52%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + +G D K + +WL
Sbjct: 119 IDLTSAVQERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNNTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLAV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKN-----CNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTS 398
G+KT S +T L + A+K +C+ + F D T+
Sbjct: 410 GIKTDWSP----PLTMLFLCATKFSAPAPSSCTDITTFLSSDPSSVTN 453
Score = 38 (18.4 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 557 PKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEI 616
P+E + + + ++QN V +L + TT T D + + S S L + +
Sbjct: 560 PEELTNGFPTEYPNYTDQNLVCQAVPKLGTSKTTPTELDLTQNSPSRLASSSSALEVAQ- 618
Query: 617 DPSVIDELPKEIQDEI 632
S P +D++
Sbjct: 619 -KSTTTPSPMAAEDQV 633
>UNIPROTKB|F1NAG6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AADN02011866 EMBL:AADN02011865 IPI:IPI00596429
Ensembl:ENSGALT00000016798 ArrayExpress:F1NAG6 Uniprot:F1NAG6
Length = 686
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 153/379 (40%), Positives = 205/379 (54%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASI + Y
Sbjct: 59 VSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIFKGY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-VKEWLCRCDADH-- 118
LDLT +A E L + L + GL+ D + + ++EWL D+
Sbjct: 119 LDLTGSARERXXXA--ELLPTTFVQGLPAEP-GLQPADKEELRRRGLQEWLASLSFDNVN 175
Query: 119 -RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV
Sbjct: 176 CPDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVP 235
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RG
Sbjct: 236 QLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRG 295
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
I E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A
Sbjct: 296 IDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAK 355
Query: 298 TLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 356
L + C + RY KI D F L Q G
Sbjct: 356 QLMV-------VIRMQGDTRLSRFCAVTRYDAQKIFNDAFALIQ----------NCNMAG 398
Query: 357 SHYSGWRITALSV--SASK 373
+H + W +SV +ASK
Sbjct: 399 AHQAAWSPPLISVHLAASK 417
>UNIPROTKB|F1NCM3 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 EMBL:AADN02011866
EMBL:AADN02011865 IPI:IPI00818532 Ensembl:ENSGALT00000038044
ArrayExpress:F1NCM3 Uniprot:F1NCM3
Length = 657
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 153/379 (40%), Positives = 205/379 (54%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASI + Y
Sbjct: 59 VSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIFKGY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-VKEWLCRCDADH-- 118
LDLT +A E L + L + GL+ D + + ++EWL D+
Sbjct: 119 LDLTGSARERXXXA--ELLPTTFVQGLPAEP-GLQPADKEELRRRGLQEWLASLSFDNVN 175
Query: 119 -RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV
Sbjct: 176 CPDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVP 235
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RG
Sbjct: 236 QLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRG 295
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
I E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D QN R+A
Sbjct: 296 IDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAK 355
Query: 298 TLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 356
L + C + RY KI D F L Q G
Sbjct: 356 QLMV-------VIRMQGDTRLSRFCAVTRYDAQKIFNDAFALIQ----------NCNMAG 398
Query: 357 SHYSGWRITALSV--SASK 373
+H + W +SV +ASK
Sbjct: 399 AHQAAWSPPLISVHLAASK 417
>UNIPROTKB|F1RRJ6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509 CTD:5429
OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:CR974460 RefSeq:XP_003356678.1
UniGene:Ssc.83954 Ensembl:ENSSSCT00000001879 GeneID:100153104
KEGG:ssc:100153104 Uniprot:F1RRJ6
Length = 698
Score = 579 (208.9 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 143/391 (36%), Positives = 211/391 (53%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE +
Sbjct: 59 VTKSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAF 118
Query: 62 LDLTDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A L + P S D + ++ GL + +G K ++ +WL
Sbjct: 119 VDLTSAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWLDSL 178
Query: 115 DADHRDK---LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+D+ L G +IV E+R + ++T CSAGI+HNK+LAKLA ++KP +QT V
Sbjct: 179 QSDNTSSPELQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV + +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SLGSVPQVFSQMPISKVRHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI E V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHEPVRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + C L Y K+ +D F A +R + S
Sbjct: 359 NDRVATQLAV----SIRVLGDKRLSSLRRCCALTHYDAHKMSQDAF----AAIRNYNTS- 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGT 381
G++T+ S +T L + A+K +GT
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASSAGT 436
Score = 37 (18.1 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 388 FNGPDKFGSTSEQLPDNFIDAAP 410
F P K S+ ++LP + D P
Sbjct: 548 FFPPQKPQSSPKELPTEYPDGGP 570
>RGD|1309893 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta" species:10116
"Rattus norvegicus" [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0010225 "response to UV-C" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1309893 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
EMBL:CH473987 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML OrthoDB:EOG4RBQJ8 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 IPI:IPI00194322
RefSeq:NP_001101674.1 UniGene:Rn.53711 Ensembl:ENSRNOT00000026049
GeneID:316235 KEGG:rno:316235 UCSC:RGD:1309893 NextBio:670614
Uniprot:D4ADZ0
Length = 689
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 158/438 (36%), Positives = 228/438 (52%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDS----KATVKEWLCRCD 115
+DLT+A + L + P S D + ++ G +D + K + +WL +
Sbjct: 119 IDLTNAVQERLEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLE 178
Query: 116 ADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
D D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 KDDPTSPDLRLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
SV L +PI+K++ LGGKLG S+ + LGV +GDL +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLY 298
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+ RGI E V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDN 358
Query: 293 KRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 351
R+A L + C L RY K+ +D F A +R + G
Sbjct: 359 GRVATQLVV----SIRVEGDKRLSSLRRCCALTRYDAHKMSQDAF----ATIRN-CNTSG 409
Query: 352 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP-----DNFI 406
V+T+ S +T L + A+K C+ + F D ++P
Sbjct: 410 VQTEWSP----PLTMLFLCATKFSASAPPACTDITVFLSSDS--GCQPKVPAASSGTRTQ 463
Query: 407 DAAPLSPSGSESYSTLNS 424
+ P +P+ E+ ++L S
Sbjct: 464 EPGPAAPTSKEAATSLES 481
>UNIPROTKB|Q9Y253 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0010225 "response to UV-C" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=TAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_216
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0005654 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0006282
GO:GO:0003887 GO:GO:0006290 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CleanEx:HS_POLH KO:K03509 EMBL:AL353602
EMBL:AB024313 EMBL:AF158185 EMBL:AB038008 EMBL:AY388614
EMBL:AL355802 EMBL:BC015742 IPI:IPI00008011 IPI:IPI00552037
RefSeq:NP_006493.1 UniGene:Hs.655467 PDB:2I5O PDB:2LSK PDB:3MR2
PDB:3MR3 PDB:3MR5 PDB:3MR6 PDB:3SI8 PDB:3TQ1 PDB:4DL2 PDB:4DL3
PDB:4DL4 PDB:4DL5 PDB:4DL6 PDB:4DL7 PDB:4ECQ PDB:4ECR PDB:4ECS
PDB:4ECT PDB:4ECU PDB:4ECV PDB:4ECW PDB:4ECX PDB:4ECY PDB:4ECZ
PDB:4ED0 PDB:4ED1 PDB:4ED2 PDB:4ED3 PDB:4ED6 PDB:4ED7 PDB:4ED8
PDB:4EEY PDBsum:2I5O PDBsum:2LSK PDBsum:3MR2 PDBsum:3MR3
PDBsum:3MR5 PDBsum:3MR6 PDBsum:3SI8 PDBsum:3TQ1 PDBsum:4DL2
PDBsum:4DL3 PDBsum:4DL4 PDBsum:4DL5 PDBsum:4DL6 PDBsum:4DL7
PDBsum:4ECQ PDBsum:4ECR PDBsum:4ECS PDBsum:4ECT PDBsum:4ECU
PDBsum:4ECV PDBsum:4ECW PDBsum:4ECX PDBsum:4ECY PDBsum:4ECZ
PDBsum:4ED0 PDBsum:4ED1 PDBsum:4ED2 PDBsum:4ED3 PDBsum:4ED6
PDBsum:4ED7 PDBsum:4ED8 PDBsum:4EEY ProteinModelPortal:Q9Y253
SMR:Q9Y253 IntAct:Q9Y253 MINT:MINT-2789553 STRING:Q9Y253
PhosphoSite:Q9Y253 DMDM:59798441 PRIDE:Q9Y253
Ensembl:ENST00000372226 Ensembl:ENST00000372236 GeneID:5429
KEGG:hsa:5429 UCSC:uc003ovq.4 CTD:5429 GeneCards:GC06P043543
HGNC:HGNC:9181 HPA:HPA006721 HPA:HPA026762 MIM:278750 MIM:603968
neXtProt:NX_Q9Y253 Orphanet:90342 PharmGKB:PA279
HOGENOM:HOG000115605 HOVERGEN:HBG053633 InParanoid:Q9Y253
OMA:SPPLTML OrthoDB:EOG4RBQJ8 PhylomeDB:Q9Y253 SABIO-RK:Q9Y253
BindingDB:Q9Y253 ChEMBL:CHEMBL5542 EvolutionaryTrace:Q9Y253
GenomeRNAi:5429 NextBio:21005 ArrayExpress:Q9Y253 Bgee:Q9Y253
Genevestigator:Q9Y253 GermOnline:ENSG00000170734 InterPro:IPR017061
PIRSF:PIRSF036603 Uniprot:Q9Y253
Length = 713
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 138/350 (39%), Positives = 193/350 (55%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>MGI|MGI:1891457 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta (RAD 30
related)" species:10090 "Mus musculus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010225 "response to UV-C"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1891457 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 HOGENOM:HOG000115605 HOVERGEN:HBG053633 OMA:SPPLTML
OrthoDB:EOG4RBQJ8 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AB027128 EMBL:AB037184 EMBL:AK036296 IPI:IPI00122040
RefSeq:NP_109640.1 UniGene:Mm.311585 ProteinModelPortal:Q9JJN0
SMR:Q9JJN0 IntAct:Q9JJN0 STRING:Q9JJN0 PhosphoSite:Q9JJN0
PRIDE:Q9JJN0 Ensembl:ENSMUST00000024749 GeneID:80905 KEGG:mmu:80905
UCSC:uc008crx.1 GeneTree:ENSGT00530000062942 InParanoid:Q9JJN0
NextBio:350254 Bgee:Q9JJN0 CleanEx:MM_POLH Genevestigator:Q9JJN0
GermOnline:ENSMUSG00000023953 Uniprot:Q9JJN0
Length = 694
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 156/438 (35%), Positives = 226/438 (51%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVKE----WLCRCD 115
+DLT A + L + P S D + ++ G ++ +A K+ WL
Sbjct: 119 IDLTSAVQERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGLLQWLDSLQ 178
Query: 116 ADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
+D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 SDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLY 298
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+ RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDN 358
Query: 293 KRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 351
R+A L + C L RY K+ +D F A +R + G
Sbjct: 359 DRVATQLVV----SIRFQGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSG 409
Query: 352 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID---- 407
++T+ S +T L + A+K C+ + F D S ++P +
Sbjct: 410 IQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSDS--SCQPKVPIASSETRTQ 463
Query: 408 -AAPLSPSGSESYSTLNS 424
+ P P+ E+ ++L S
Sbjct: 464 GSGPAVPTSKEAATSLAS 481
>UNIPROTKB|F1MZ79 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:DAAA02055099 IPI:IPI00691559 Ensembl:ENSBTAT00000007900
Uniprot:F1MZ79
Length = 710
Score = 561 (202.5 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 126/310 (40%), Positives = 179/310 (57%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE Y
Sbjct: 58 VTRNMWADDAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAY 117
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
LDLT A + L + P S D + ++ G + +G K + +WL
Sbjct: 118 LDLTSAVQERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSL 177
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 178 QTESTSSPDLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 237
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L + +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL
Sbjct: 238 SHGSVPQLFNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWL 297
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 298 YAMCRGIEHDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNA 357
Query: 292 NKRIAHTLTL 301
N R+A L +
Sbjct: 358 NDRVATQLVV 367
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 589 TTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQ 647
TT S+D ++ S K + P+V PK+ ++++ + + H+VK+
Sbjct: 440 TTFLSSDPSSLPKVPITSSEAKT--QGSGPAVTT--PKKATTSLESFFQKAAEKHKVKE 494
>UNIPROTKB|B4DG64 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0006301
GO:GO:0003887 GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879
EMBL:AL353602 EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181
HOVERGEN:HBG053633 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AK294430 IPI:IPI00646080 SMR:B4DG64 STRING:B4DG64
Ensembl:ENST00000535400 Uniprot:B4DG64
Length = 651
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 136/346 (39%), Positives = 191/346 (55%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 66 DAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 118
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 120
Query: 119 R---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 296 AHTLTLHXXXXXXXXXXXXXXXXXXXCPL-RYGTAKIQEDTFNLFQ 340
A L + C L RY K+ D F + +
Sbjct: 301 ATQLVV----SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>FB|FBgn0037141 [details] [associations]
symbol:DNApol-eta "DNApol-eta" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0000724 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HSSP:P96022 InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AY058771
EMBL:AB049433 EMBL:AB036766 IntAct:Q9GNC0 STRING:Q9GNC0
FlyBase:FBgn0037141 InParanoid:Q9GNC0 OrthoDB:EOG4XPNX1
Uniprot:Q9GNC0
Length = 885
Score = 554 (200.1 bits), Expect = 5.8e-53, P = 5.8e-53
Identities = 145/405 (35%), Positives = 207/405 (51%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + + +E + + +G S +K T + +
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQ 187
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 188 MSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKP 247
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ +
Sbjct: 248 NKQTILPLTETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDE 307
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 308 KNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRL 367
Query: 286 CSD-LEQNKRIAHTLTLHXXXXXXXXXXXXXXXXXXXCPLR-YGTAKIQEDTFNLFQAGL 343
D +E N+R H + + LR Y I + +L +A
Sbjct: 368 EKDFIENNRRAKHMVVQYVQDIDGEEVASSRSTA-----LRDYDQESIVRLSLDLIKANT 422
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ FL G ++ ++ I L +S K V SG + + F
Sbjct: 423 KTFLRP-GSESALNN----AIKFLGISVGKFETVSSGQNKLQEMF 462
>WB|WBGene00018721 [details] [associations]
symbol:polh-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:FO080224 EMBL:AB244413 PIR:A88395
RefSeq:NP_497480.2 UniGene:Cel.10441 ProteinModelPortal:G5EFY1
SMR:G5EFY1 EnsemblMetazoa:F53A3.2 GeneID:175337
KEGG:cel:CELE_F53A3.2 CTD:175337 WormBase:F53A3.2 OMA:GVGNNKM
NextBio:887718 Uniprot:G5EFY1
Length = 584
Score = 416 (151.5 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 103/302 (34%), Positives = 166/302 (54%)
Query: 10 EAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEVYLDL 64
EAK CPQI + VP+ KAD+ YR+A +EV +L E+AS+DE +LDL
Sbjct: 64 EAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKASVDEAFLDL 123
Query: 65 TDAAEAMLAETPP-ESLDEVDEEALK----SHIL-GLESKDGNDSKATVK-EWLCRCDAD 117
+ L E E L+E + A+ +H+ G + K+ + V E++
Sbjct: 124 SAYTNQKLQELRENEGLEEFLQAAITYLPTTHLATGEDVKENEHLREDVLLEYIENARNC 183
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
+ LL + V ++R Q+ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+
Sbjct: 184 TENLLLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFYVR 243
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
+L PI ++ GGK+G +Q L +T +G+LL+ +L E++ N +L ++A G
Sbjct: 244 EILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFP-NQHEYLRSVAEG 302
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
E V+ R S K+FPG ++++V ++ WL+ L +EL++RL +D +NKR A
Sbjct: 303 HCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENKRTAE 362
Query: 298 TL 299
L
Sbjct: 363 NL 364
>UNIPROTKB|G5EH81 [details] [associations]
symbol:MGCH7_ch7g688 "Sister chromatid cohesion protein
Eso1" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 EMBL:CM000230 EMBL:CM001237
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 RefSeq:XP_003720794.1
EnsemblFungi:MGG_02924T0 GeneID:2682477 KEGG:mgr:MGG_02924
Uniprot:G5EH81
Length = 668
Score = 309 (113.8 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 91/290 (31%), Positives = 141/290 (48%)
Query: 25 VARGKADLSSYRNAGSEVVSILAR---KGRC--ERASIDEVYLDLTDAAEAMLAETPPES 79
+A K L YR +++++ +C E+ASIDEV++DL+ + L E PE
Sbjct: 136 IATDKVSLDPYRLQSRTILALIKECLPPHQCKVEKASIDEVFIDLSANVHSKLIERFPEL 195
Query: 80 LDE---VDEEALKSHILGLESKDGN-DSKATVKEWLCRCD-ADHRDKLLACGVLIVTELR 134
D +A + + + + D D+ + E D D D L I ++R
Sbjct: 196 ASPPPGADAQA-RLPLPPVSALDWQADALIELDETETETDDPDWDDIALLIASEITRDIR 254
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 194
+ ++TCSAG+A NK+L+KL S KP QQT + +V+ L K++ LGGK
Sbjct: 255 QTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGK 314
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNIARGISGEEVQARLLPKSHG 253
LG + G +V DLL+ D+L+ G +T W++N RGI EV +R KS
Sbjct: 315 LGDQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSML 374
Query: 254 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
S KSF P ++ +V WL ++ RL + + +NKR T+ LH
Sbjct: 375 SAKSFR-P-SIHSVDQANKWLRIFSADIFSRLVEEGVLENKRRPKTMNLH 422
>ASPGD|ASPL0000072145 [details] [associations]
symbol:AN4678 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0019985 "translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:BN001303
EMBL:AACD01000080 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 OrthoDB:EOG4M0J8V InterPro:IPR017061
PIRSF:PIRSF036603 RefSeq:XP_662282.1 ProteinModelPortal:Q5B452
STRING:Q5B452 EnsemblFungi:CADANIAT00005754 GeneID:2872476
KEGG:ani:AN4678.2 HOGENOM:HOG000173699 OMA:DDPDWDD Uniprot:Q5B452
Length = 674
Score = 303 (111.7 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 86/257 (33%), Positives = 125/257 (48%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEV---DEEALKS--HILGLESKDGNDSKATV 107
E+AS+DEV++DL+ +L + PE ++ D AL LE D D +
Sbjct: 185 EKASVDEVFIDLSPLVFGVLLQRYPEMREKPHGDDRVALLPCPPTTALEW-DTEDCLVDL 243
Query: 108 KEWLCRCD-ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 166
E D D D + G IV +R V +TCSAGIA NKM+AKL S NKP
Sbjct: 244 DENETEVDDPDWDDVAMLIGAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPN 303
Query: 167 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 226
+QT V +++ L K++ LGGKLG + G + +LLK S ++ + +
Sbjct: 304 KQTVVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDD 363
Query: 227 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
T WL+ I RG EV R KS S KSF P ++ T+ WL+ ++ RL
Sbjct: 364 TAVWLYGIIRGEDKSEVNPRTQIKSMLSAKSFR-P-SINTLDQADKWLHIFAADIYGRLV 421
Query: 287 SD-LEQNKRIAHTLTLH 302
+ + ++KR T+ LH
Sbjct: 422 EEGVLEHKRRPKTIALH 438
>POMBASE|SPBC16A3.11 [details] [associations]
symbol:eso1 "sister chromatid cohesion protein/DNA
polymerase eta Eso1 fusion protein" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006473
"protein acetylation" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016407 "acetyltransferase activity"
evidence=ISS] [GO:0019985 "translesion synthesis" evidence=IMP]
[GO:0034087 "establishment of mitotic sister chromatid cohesion"
evidence=IMP] [GO:0034182 "regulation of maintenance of mitotic
sister chromatid cohesion" evidence=TAS] [GO:0043596 "nuclear
replication fork" evidence=IC] InterPro:IPR001126
InterPro:IPR015880 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00355
PomBase:SPBC16A3.11 GO:GO:0046872 GO:GO:0003684 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596
GO:GO:0016746 GO:GO:0034087 GO:GO:0006473 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03509 EMBL:AB039861 PIR:T39541 RefSeq:NP_596778.1
ProteinModelPortal:O42917 IntAct:O42917 STRING:O42917
EnsemblFungi:SPBC16A3.11.1 GeneID:2539666 KEGG:spo:SPBC16A3.11
OrthoDB:EOG4M0J8V NextBio:20800820 GO:GO:0034182 Uniprot:O42917
Length = 872
Score = 285 (105.4 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 80/271 (29%), Positives = 136/271 (50%)
Query: 29 KADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEE 86
K L YR+ ++++I+ + ++ASIDE +++LT D +L E P + D
Sbjct: 117 KTCLDPYRHESVKILNIIKKHAPVVKKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSN 176
Query: 87 -AL-KSHILGLESKDGNDSKATVKEWLCR-CDADHRDKLLACGVLIVTELRMQVLKETEF 143
AL ++ +L ++ G + V + + D D L IV E+R + + ++
Sbjct: 177 VALPQAPVLLWPAEFGMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKY 236
Query: 144 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 203
TCSAG++ N ML+KL S NKP +QT + ++++ L SL I ++ LGGK G + N L
Sbjct: 237 TCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLL 296
Query: 204 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 263
G ++ D+ S D L + G G +WN+ GI E+ ++ KS S K+F +
Sbjct: 297 GTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQK 355
Query: 264 LKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
+K+ +W +L R +LE +R
Sbjct: 356 VKSEEDAINWFQVFASDLRSRFL-ELEGMRR 385
>UNIPROTKB|Q47155 [details] [associations]
symbol:dinB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0009432 "SOS response"
evidence=IEP;IDA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:U70214 GO:GO:0000731
GO:GO:0009432 GO:GO:0003887 EMBL:D38582 GO:GO:0019985 PDB:1OK7
PDB:1UNN PDBsum:1OK7 PDBsum:1UNN KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 EMBL:AF483080
EMBL:AF483081 EMBL:AF483082 EMBL:AF483083 EMBL:AF483084
EMBL:AF483085 EMBL:AF483086 EMBL:AF483087 EMBL:AF483088
EMBL:AF483089 EMBL:AF483090 EMBL:AF483091 EMBL:AF483092
EMBL:AF483093 EMBL:AF483094 EMBL:AF483095 EMBL:AF483096
EMBL:AF483097 EMBL:AF483098 EMBL:AF483099 EMBL:AF483100
EMBL:AF483101 EMBL:AF483102 EMBL:AF483103 EMBL:AF483104
EMBL:AF483105 PIR:H64747 RefSeq:NP_414766.1 RefSeq:YP_488526.1
ProteinModelPortal:Q47155 SMR:Q47155 IntAct:Q47155
EnsemblBacteria:EBESCT00000002588 EnsemblBacteria:EBESCT00000014477
GeneID:12932684 GeneID:944922 KEGG:ecj:Y75_p0222 KEGG:eco:b0231
PATRIC:32115577 EchoBASE:EB2935 EcoGene:EG13141 OMA:MNILNEY
ProtClustDB:PRK02406 BioCyc:EcoCyc:G6115-MONOMER
BioCyc:ECOL316407:JW0221-MONOMER BioCyc:MetaCyc:G6115-MONOMER
EvolutionaryTrace:Q47155 Genevestigator:Q47155 Uniprot:Q47155
Length = 351
Score = 202 (76.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 56/169 (33%), Positives = 85/169 (50%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGVG-KVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 296
L KS G ++ + HW CE + ERL +LE +R+A
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELE--RRLA 275
Score = 82 (33.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ P G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLL--P---GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDA 67
YLD+TD+
Sbjct: 106 YLDVTDS 112
>CGD|CAL0002818 [details] [associations]
symbol:RAD32 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 CGD:CAL0002818 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 EMBL:AACQ01000019 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 HOGENOM:HOG000065930 RefSeq:XP_720989.1
ProteinModelPortal:Q5AHD1 STRING:Q5AHD1 GeneID:3637340
KEGG:cal:CaO19.866 Uniprot:Q5AHD1
Length = 640
Score = 237 (88.5 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 82/296 (27%), Positives = 136/296 (45%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE----S 79
+ + K L YR +++ ++ + E+AS+DE Y+DL L + P+ S
Sbjct: 134 INKHKVSLDPYRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDLFPQLSRGS 193
Query: 80 LDEVDEE----ALKSHILGLESKDGNDSKATVKEWLCRCDA-------DHRDKLLACGVL 128
D + L L L K + T KE D D D G
Sbjct: 194 RDNPENSYANLPLIPPTLPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDICFIIGSQ 253
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++ L + + +
Sbjct: 254 ILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDV 313
Query: 189 KQLGGKLGTSLQNELGV----TTVGDLLK-FSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+GGKLG S+ N++ V ++ + + FS+ ++E G G ++NI RGI+ E+
Sbjct: 314 TGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIEL 373
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHT 298
Q+ + KS S K+F + + WL +L RL DL+ +N ++ T
Sbjct: 374 QSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLI-DLDSENMELSST 427
>ZFIN|ZDB-GENE-050417-376 [details] [associations]
symbol:poli "polymerase (DNA directed) iota"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 ZFIN:ZDB-GENE-050417-376
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CTD:11201 HOVERGEN:HBG053634 KO:K03510
EMBL:BC092781 IPI:IPI00481247 RefSeq:NP_001017834.1
UniGene:Dr.78857 ProteinModelPortal:Q568P0 SMR:Q568P0 GeneID:550532
KEGG:dre:550532 InParanoid:Q568P0 NextBio:20879773 Uniprot:Q568P0
Length = 710
Score = 191 (72.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 89/308 (28%), Positives = 131/308 (42%)
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PFSS 175
D + LA G +I E+R + T AG+A NK+LAKL SG KP QQTT+ P S+
Sbjct: 172 DEENIRLAVGSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSN 231
Query: 176 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+ L+ SL + K+ +G K L+ LG+ V DL + L + +G + N+
Sbjct: 232 AE-LMSSLTGLIKVPGIGYKTREKLK-ALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNL 289
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
A GI V P+S SF + + T+ V + +L L+ER+ D Q
Sbjct: 290 ACGIDDSPVTPAGPPQSLSDEDSF---KKMSTLEEVLKKIEELLINLTERMHKDGRQ--- 343
Query: 295 IAHTLTLHXXXXXXXXXXXXXXXXXXXCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVK 353
HTL L CP+ T KI + L + F K
Sbjct: 344 -PHTLRL--TIRKYTVTNRWFNRESRQCPIPNHTGLKITGGSSEAVPQLLSLSMKLFH-K 399
Query: 354 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSP 413
H + +T L+V S + S SI +F K ST+ Q+P +D+ L
Sbjct: 400 MVDPHQP-FHLTLLNVCFSNLQAKSSSKSSIASFFT--HKSPSTT-QIPSQQVDS-DLCE 454
Query: 414 SGSESYST 421
S + S+ T
Sbjct: 455 SVASSHFT 462
Score = 80 (33.2 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAA 68
+A E CPQ+ LV +G+ DL+ YR +V +L ER DE ++D+T+
Sbjct: 92 DAVEKCPQLVLV-----KGE-DLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMV 145
Query: 69 EAMLAET 75
E + ET
Sbjct: 146 EKRIKET 152
Score = 58 (25.5 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 34/141 (24%), Positives = 55/141 (39%)
Query: 515 ILNFFKSGDL---SCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSE 571
+++ FK GD + + D EH T + + VN+ N LS+
Sbjct: 552 LMSSFKKGDSFYRPADTEDVDPEHQPTFASRQPKTPKPCESAVNVCTNSASNPHE--LSQ 609
Query: 572 SNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDE 631
+ + +IP E +E + S D S Q Q +DP V +LP ++Q E
Sbjct: 610 NFSSPQSIP-EFSSELVMVTESDDIPHSTQAIQPEVP-----ANVDPYVFSQLPADVQRE 663
Query: 632 IQA-WLR-------PSKRPHR 644
+ W + PSK H+
Sbjct: 664 LLTEWRQQRPVLKIPSKHSHK 684
Score = 43 (20.2 bits), Expect = 7.6e-15, Sum P(3) = 7.6e-15
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 496 KSNQQEHKKSALKDKGASSILNFFK 520
KS+ +K++ K ++IL +FK
Sbjct: 684 KSSNSRDRKTSTKGSQCNNILKYFK 708
Score = 39 (18.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 625 PKEIQDEIQAWLRPSKRPHRVKQGFT 650
PK + + + PH + Q F+
Sbjct: 587 PKPCESAVNVCTNSASNPHELSQNFS 612
>UNIPROTKB|J3KSW2 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KSW2 Ensembl:ENST00000579434
Uniprot:J3KSW2
Length = 637
Score = 169 (64.5 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 55/180 (30%), Positives = 85/180 (47%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 95 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 154
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 155 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 213
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 214 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 266
Score = 91 (37.1 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 5 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 58
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLES 97
E L + +S DE+ + H+ +S
Sbjct: 59 EKRLQQL--QS-DELSAVTVSGHVYNNQS 84
Score = 59 (25.8 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 539 LLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 598
L+P S S K + +++ D E+N++ +P R+ T + D
Sbjct: 350 LMPSLSTTSRSGKHSFKMKDTHMEDFPKD--KETNRDF--LPSGRIESTRTRESPLDTTN 405
Query: 599 SDQIQQRSESWKLRIEE-IDPSVIDELPKEIQDEI 632
+ + +E + E +D V +LP +IQ+EI
Sbjct: 406 FSKEKDINEFPLCSLPEGVDQEVFKQLPVDIQEEI 440
Score = 58 (25.5 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 615 EIDPSVIDELPKEIQDEIQA-WLRPSKRPH 643
+IDP V ELP+ +Q E+ A W R H
Sbjct: 604 DIDPQVFYELPEAVQKELLAEWKRAGSDFH 633
>UNIPROTKB|Q83EN5 [details] [associations]
symbol:dinP "DNA polymerase IV" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003887
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 186 (70.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 49/157 (31%), Positives = 80/157 (50%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R Q++K T SAG+A NK+LAK+AS NKP + S + +LPI+K+
Sbjct: 145 IAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEKI 204
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K+ + + T DL S + L +S+G + G L+ + RGI V+ +
Sbjct: 205 HGVG-KITAQKMKAMNIHTCSDLQALSREALSKSFG-SFGVTLYELCRGIDPRSVEPNRI 262
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS +F + + T++ + L L +L +RL
Sbjct: 263 RKSVSVEHTFS--QDIATLSECEIELANLFNDLKQRL 297
Score = 78 (32.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S++ AK++CP L+ +PV ++ YR G ++ + E S+DE
Sbjct: 76 VQSAISSSYAKKLCPS--LIILPV-----NMEKYRAIGHQIRGLFQEYTHLVEPLSLDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHIL 93
YLD++D + T E+ E+ +K H L
Sbjct: 129 YLDVSDCKIHQGSAT--RIAQEIREQIVKRHSL 159
>TIGR_CMR|CBU_0280 [details] [associations]
symbol:CBU_0280 "DNA-damage-inducible protein P"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 186 (70.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 49/157 (31%), Positives = 80/157 (50%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R Q++K T SAG+A NK+LAK+AS NKP + S + +LPI+K+
Sbjct: 145 IAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPSKADDFVKTLPIEKI 204
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K+ + + T DL S + L +S+G + G L+ + RGI V+ +
Sbjct: 205 HGVG-KITAQKMKAMNIHTCSDLQALSREALSKSFG-SFGVTLYELCRGIDPRSVEPNRI 262
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS +F + + T++ + L L +L +RL
Sbjct: 263 RKSVSVEHTFS--QDIATLSECEIELANLFNDLKQRL 297
Score = 78 (32.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S++ AK++CP L+ +PV ++ YR G ++ + E S+DE
Sbjct: 76 VQSAISSSYAKKLCPS--LIILPV-----NMEKYRAIGHQIRGLFQEYTHLVEPLSLDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHIL 93
YLD++D + T E+ E+ +K H L
Sbjct: 129 YLDVSDCKIHQGSAT--RIAQEIREQIVKRHSL 159
>UNIPROTKB|Q9UNA4 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005654 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AY094607 EMBL:AC093462
EMBL:AF140501 EMBL:AL136670 EMBL:BC032662 EMBL:AF245438
IPI:IPI00296840 RefSeq:NP_009126.2 UniGene:Hs.438533 PDB:1T3N
PDB:1ZET PDB:2ALZ PDB:2DPI PDB:2DPJ PDB:2FLL PDB:2FLN PDB:2FLP
PDB:2KHU PDB:2KHW PDB:2KTF PDB:2L0F PDB:2L0G PDB:3EPG PDB:3EPI
PDB:3G6V PDB:3G6X PDB:3G6Y PDB:3GV5 PDB:3GV7 PDB:3GV8 PDB:3H40
PDB:3H4B PDB:3H4D PDB:3NGD PDB:3OSN PDB:3Q8P PDB:3Q8Q PDB:3Q8R
PDB:3Q8S PDB:4EBC PDB:4EBD PDB:4EBE PDB:4EYH PDB:4EYI PDB:4FS1
PDB:4FS2 PDBsum:1T3N PDBsum:1ZET PDBsum:2ALZ PDBsum:2DPI
PDBsum:2DPJ PDBsum:2FLL PDBsum:2FLN PDBsum:2FLP PDBsum:2KHU
PDBsum:2KHW PDBsum:2KTF PDBsum:2L0F PDBsum:2L0G PDBsum:3EPG
PDBsum:3EPI PDBsum:3G6V PDBsum:3G6X PDBsum:3G6Y PDBsum:3GV5
PDBsum:3GV7 PDBsum:3GV8 PDBsum:3H40 PDBsum:3H4B PDBsum:3H4D
PDBsum:3NGD PDBsum:3OSN PDBsum:3Q8P PDBsum:3Q8Q PDBsum:3Q8R
PDBsum:3Q8S PDBsum:4EBC PDBsum:4EBD PDBsum:4EBE PDBsum:4EYH
PDBsum:4EYI PDBsum:4FS1 PDBsum:4FS2 ProteinModelPortal:Q9UNA4
SMR:Q9UNA4 IntAct:Q9UNA4 MINT:MINT-1189678 STRING:Q9UNA4
PhosphoSite:Q9UNA4 DMDM:59798440 PaxDb:Q9UNA4 PRIDE:Q9UNA4
DNASU:11201 Ensembl:ENST00000579534 GeneID:11201 KEGG:hsa:11201
UCSC:uc002lfj.4 CTD:11201 GeneCards:GC18P051731 H-InvDB:HIX0014457
HGNC:HGNC:9182 HPA:HPA012000 MIM:605252 neXtProt:NX_Q9UNA4
PharmGKB:PA33502 HOGENOM:HOG000234325 HOVERGEN:HBG053634
InParanoid:Q9UNA4 KO:K03510 OMA:VFYELPE OrthoDB:EOG46T310
ChEMBL:CHEMBL5391 ChiTaRS:POLI EvolutionaryTrace:Q9UNA4
GenomeRNAi:11201 NextBio:42637 Bgee:Q9UNA4 CleanEx:HS_POLI
Genevestigator:Q9UNA4 GermOnline:ENSG00000101751 Uniprot:Q9UNA4
Length = 740
Score = 169 (64.5 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 55/180 (30%), Positives = 85/180 (47%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 198 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 257
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G
Sbjct: 258 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNS 316
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 317 PVILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 369
Score = 91 (37.1 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 108 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 161
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLES 97
E L + +S DE+ + H+ +S
Sbjct: 162 EKRLQQL--QS-DELSAVTVSGHVYNNQS 187
Score = 59 (25.8 bits), Expect = 4.2e-15, Sum P(3) = 4.2e-15
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 539 LLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 598
L+P S S K + +++ D E+N++ +P R+ T + D
Sbjct: 453 LMPSLSTTSRSGKHSFKMKDTHMEDFPKD--KETNRDF--LPSGRIESTRTRESPLDTTN 508
Query: 599 SDQIQQRSESWKLRIEE-IDPSVIDELPKEIQDEI 632
+ + +E + E +D V +LP +IQ+EI
Sbjct: 509 FSKEKDINEFPLCSLPEGVDQEVFKQLPVDIQEEI 543
Score = 58 (25.5 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 615 EIDPSVIDELPKEIQDEIQA-WLRPSKRPH 643
+IDP V ELP+ +Q E+ A W R H
Sbjct: 707 DIDPQVFYELPEAVQKELLAEWKRAGSDFH 736
>TAIR|locus:2156319 [details] [associations]
symbol:REV1 species:3702 "Arabidopsis thaliana"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0010224 "response to UV-B"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010224 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AB016874 EMBL:AC002342
EMBL:AB187523 EMBL:EF016093 EMBL:EF016094 EMBL:EF016095
EMBL:EF016096 EMBL:EF016097 EMBL:EF016098 EMBL:AY080825
IPI:IPI00517369 IPI:IPI00554422 IPI:IPI00837466 IPI:IPI00891315
RefSeq:NP_001119373.1 RefSeq:NP_199288.4 UniGene:At.30056
ProteinModelPortal:A3EWL3 SMR:A3EWL3 STRING:A3EWL3 PRIDE:A3EWL3
EnsemblPlants:AT5G44750.2 GeneID:834504 KEGG:ath:AT5G44750
TAIR:At5g44750 HOGENOM:HOG000246421 KO:K03515 OMA:TIPYDFD
PhylomeDB:A3EWL3 ProtClustDB:CLSN2681660 Genevestigator:A3EWL3
Uniprot:A3EWL3
Length = 1105
Score = 202 (76.2 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 53/161 (32%), Positives = 85/161 (52%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
++ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGT 551
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 248 LPKSHGSGKSFPGPR---ALKTVASVQHWLNQLCEELSERL 285
KS G+ ++ G R VQH+L LC+E+S RL
Sbjct: 611 ESKSIGAEVNW-GVRFRDQQDVFILVQHFLQCLCKEVSLRL 650
Score = 70 (29.7 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEVYLDLTDAAE 69
AK++CPQ LV VP + +Y + IL R R +A S DE +LD++D ++
Sbjct: 435 AKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSD 487
Query: 70 A---MLAET 75
+LA T
Sbjct: 488 VETEVLAST 496
Score = 50 (22.7 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 613 IEEIDPSVIDELPKEIQDEIQAWLRPSKR 641
+ ++D SV+ ELP+E++ ++ PS R
Sbjct: 912 LSQVDVSVLQELPEELRADVLGAF-PSHR 939
>UNIPROTKB|I3LUT8 [details] [associations]
symbol:LOC100737500 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 GeneTree:ENSGT00530000062942
EMBL:CU928880 Ensembl:ENSSSCT00000029503 OMA:FRRSEAK Uniprot:I3LUT8
Length = 191
Score = 191 (72.3 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 44/115 (38%), Positives = 65/115 (56%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE +
Sbjct: 59 VTKSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAF 118
Query: 62 LDLTDAAEAMLAETP--PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 114
+DLT+A L + P S D + ++ GL + +G K T C C
Sbjct: 119 VDLTNAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKGTSIASYCFC 173
>UNIPROTKB|F1PDA5 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:AAEX03000145 Ensembl:ENSCAFT00000000242
Uniprot:F1PDA5
Length = 702
Score = 179 (68.1 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 56/180 (31%), Positives = 87/180 (48%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 159 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQS 218
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L +K+M +G K L+ LG+++V DL FS L++ G + + ++ G
Sbjct: 219 LNHVKEMPGIGYKTAKRLE-ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNS 277
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S SF + + V++ + +L L R+C D R HT+ L
Sbjct: 278 PVTPSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVCQD----GRKPHTIRL 330
Score = 70 (29.7 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 603 QQRSESWKLRI-EEIDPSVIDELPKEIQDEIQA-WLRPSKRPHRV 645
+Q S K+ ++DP V ELP+E+Q E+ A W R H V
Sbjct: 656 EQDSSDEKITFPSDVDPEVFYELPEEVQKELLADWKRAGSDFHNV 700
Score = 68 (29.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 539 LLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 598
L P S S K+ + +++ D E+N + +P R+ T D
Sbjct: 414 LTPSLSTTSRSGKRSFKMKDSHMEDFPKD--KETNWDF--LPSGRIESTRTGEAPRDTAD 469
Query: 599 SDQIQQRSESWKLRI--EEIDPSVIDELPKEIQDEI 632
+ ++ S+ + LR E ID V ELP +IQ+EI
Sbjct: 470 FSK-EKDSDEFPLRSLPEGIDQEVFKELPVDIQEEI 504
Score = 46 (21.3 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 451 KANTWNGLDPSCXXXXXXXXXXXXXXLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDK 510
K W+ L PS D +K ++ D+ +RS+P +Q+ K+ + +
Sbjct: 443 KETNWDFL-PSGRIESTRTGEAPRDTADFSKEKDSDEFPLRSLPEGIDQEVFKELPVDIQ 501
Query: 511 GASSILNFFKSGDLSCSSGNHDTE-HAETLLPLGDCLSESNKKQVNIPKERLDNS 564
IL+ KSG+ G+ + HA + + +N PK+ L NS
Sbjct: 502 --EEILSG-KSGEKVQGKGSLNCPLHASRGVLSFFSTKQMQDSPLN-PKDHLSNS 552
Score = 37 (18.1 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 323 PLRYGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITA----LSVSASKIVP 376
PLR I ++ F ++E + G G K QG + A LS ++K
Sbjct: 480 PLRSLPEGIDQEVFKELPVDIQEEILSGKSGEKVQGKGSLNCPLHASRGVLSFFSTK--Q 537
Query: 377 VLSGTCSIMKYFNGPDKFGSTSEQLPDNF-IDAAPLSPSGSE-SYSTLNSTELQNE 430
+ + + + + S S P ++++ SP S+ +YS + LQ+E
Sbjct: 538 MQDSPLNPKDHLSNSKQISSVSSCEPGTSGLNSSSSSPPSSQKNYSHYIDSRLQDE 593
>UNIPROTKB|J3KTN3 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000583136 Uniprot:J3KTN3
Length = 222
Score = 138 (53.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 38/94 (40%), Positives = 53/94 (56%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 130 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 189
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
L IK++ +G K L+ LG+ +V DL FS
Sbjct: 190 LNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFS 222
Score = 91 (37.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 40 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 93
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLES 97
E L + +S DE+ + H+ +S
Sbjct: 94 EKRLQQL--QS-DELSAVTVSGHVYNNQS 119
>UNIPROTKB|Q8EHU9 [details] [associations]
symbol:dinB "DNA polymerase IV" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
ProtClustDB:PRK02406 RefSeq:NP_716739.1 HSSP:Q9UHC5
ProteinModelPortal:Q8EHU9 GeneID:1168948 KEGG:son:SO_1114
PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 162 (62.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R +L ET T SAG+A K LAK+AS +NKP Q +P V + +L +++
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K+ + LG+ T GD+ + + +L +G G L A+GI +
Sbjct: 181 IPGVG-KVTAEKLSSLGLNTCGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G + + + T+ Q + L +ELS RL
Sbjct: 239 ERKSVGVETTLA--QDIYTLEQCQQVMPGLIQELSTRL 274
Score = 75 (31.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S+M A+++CP +L+ VP G+ + Y++ S++ +I +R E S+DE
Sbjct: 53 VRSAMATAYAQKLCP--DLILVP---GRMQV--YKDVSSQIRAIFSRYTELIEPLSLDEA 105
Query: 61 YLDLTD 66
YLD++D
Sbjct: 106 YLDVSD 111
>TIGR_CMR|SO_1114 [details] [associations]
symbol:SO_1114 "DNA-damage-inducible protein P"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:NP_716739.1 HSSP:Q9UHC5 ProteinModelPortal:Q8EHU9
GeneID:1168948 KEGG:son:SO_1114 PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 162 (62.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R +L ET T SAG+A K LAK+AS +NKP Q +P V + +L +++
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K+ + LG+ T GD+ + + +L +G G L A+GI +
Sbjct: 181 IPGVG-KVTAEKLSSLGLNTCGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G + + + T+ Q + L +ELS RL
Sbjct: 239 ERKSVGVETTLA--QDIYTLEQCQQVMPGLIQELSTRL 274
Score = 75 (31.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S+M A+++CP +L+ VP G+ + Y++ S++ +I +R E S+DE
Sbjct: 53 VRSAMATAYAQKLCP--DLILVP---GRMQV--YKDVSSQIRAIFSRYTELIEPLSLDEA 105
Query: 61 YLDLTD 66
YLD++D
Sbjct: 106 YLDVSD 111
>UNIPROTKB|F1NCT8 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 IPI:IPI00680917
Ensembl:ENSGALT00000032847 ArrayExpress:F1NCT8 Uniprot:F1NCT8
Length = 862
Score = 205 (77.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 87/319 (27%), Positives = 142/319 (44%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G AK++CP + +V P+ + YR EV ILA +DE
Sbjct: 148 VRAAMPGFIAKKLCPHLTIV--PL-----NFEKYRKVSKEVKEILAEYDPHFMPMGLDEA 200
Query: 61 YLDLTDAAEAMLAETPPESLDEV--DEEALKSHILGLESK--DGNDSKATVKE---WLCR 113
YL++T+ E L P + E + I+ S+ DG S + E +
Sbjct: 201 YLNVTEHLEERL-NWPEDKRRYFLNTENTTEKRIVKKRSQVNDGYSSSPELFEDGTSVMD 259
Query: 114 CDADHRDKLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 166
D+ RD+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S NKP
Sbjct: 260 DDSGQRDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPN 319
Query: 167 QQTTV-PF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
Q + P +V + LPI+K+ +G K+ + LG+ T +L + + S
Sbjct: 320 GQCRISPERQAVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRALLSLL 375
Query: 225 FNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 282
F+ +W +I+ G+ ++ G KS R ++ + + LC+EL
Sbjct: 376 FSEASWRSFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LCQELC 428
Query: 283 ERLCSDLEQNKRIAHTLTL 301
L DL++ T+TL
Sbjct: 429 RELAQDLQKEGLKGKTVTL 447
Score = 41 (19.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 22/111 (19%), Positives = 42/111 (37%)
Query: 545 CLSESNKKQVNIPKERLDNSTGDCLSESN-QNQVNIPKERLAEAATTSTSTDRCGSDQIQ 603
C E + + E ++ +CL+ S ++ V I K L+ T C ++ I
Sbjct: 615 CFEEQSSSNL----EEINRHVDECLAGSLVEDTVEISKNDLSRE-NTFNFLSHCKNENID 669
Query: 604 QRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLR-PSKRPHRVKQGFTIAD 653
E+ ++ S + + + S++PHR KQ + D
Sbjct: 670 DCKENVTDQLAGTGQSASTSENSSGNSRDKKFTQIVSEKPHREKQPGDLID 720
>RGD|1305212 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1305212 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:CH473971
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201 KO:K03510
OrthoDB:EOG46T310 IPI:IPI00870858 RefSeq:NP_001099607.1
UniGene:Rn.136855 Ensembl:ENSRNOT00000016189 GeneID:291526
KEGG:rno:291526 NextBio:632673 Uniprot:D4A8I8
Length = 732
Score = 163 (62.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 55/180 (30%), Positives = 84/180 (46%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 193 LAVGSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 252
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IK+M +G K L+ LG+ +V DL F L++ G + + ++ G
Sbjct: 253 LNHIKEMPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKS 311
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 312 PVTPSGPPQSFSEEDTF---KKCSSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRL 364
Score = 115 (45.5 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 59/222 (26%), Positives = 94/222 (42%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DLS YR +V +L ER DE ++DLT+
Sbjct: 103 DAKEKCPQLVLVN-----GE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMV 156
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDS---KATVKEWLCR--CDADHRDK-L 122
E L + P DEV + H+ +S + + S + V + +A H L
Sbjct: 157 EKRLQQLPS---DEVPSVTMSGHVYNNQSVNLHSSTHVRLAVGSQIAAEMREAMHNQLGL 213
Query: 123 LAC-GVL---IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
C GV ++ +L V K + T + + L +N + + + + K
Sbjct: 214 TGCAGVAPNKLLAKLVSGVFKPNQQT----VLLPESCQHLIHSLNHIKEMPGIGYKTAKR 269
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL--LKFSEDK 218
L + L I + L +L+ ELG++ + L F EDK
Sbjct: 270 L-EVLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDK 310
Score = 83 (34.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 574 QNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRI-EEIDPSVIDELPKEIQDEI 632
Q++ R A++ + +T G + +Q S KL +IDP V ELP+E+Q E+
Sbjct: 657 QSEQLFSTHRTADSHKQTATTSHQGLENREQDSADEKLTFPSDIDPQVFYELPEEVQREL 716
Query: 633 QA-WLR 637
A W R
Sbjct: 717 MAEWKR 722
Score = 53 (23.7 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 567 DCLSESNQNQVNIPKERLAEAATTSTSTDR-CGSDQIQQRSESWKLRIEEIDPSVIDELP 625
D E N +P R+ + +D C + + E +D V +LP
Sbjct: 471 DSYKEKEANWDCLPSRRIESTRRGESPSDATCFPKEKDTSDLPLQFLPEGVDQEVFTQLP 530
Query: 626 KEIQDEI 632
+IQ+EI
Sbjct: 531 ADIQEEI 537
>TIGR_CMR|CHY_1651 [details] [associations]
symbol:CHY_1651 "DNA polymerase IV - AMBIGUITY"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HOGENOM:HOG000082710 RefSeq:YP_360472.1
HSSP:P96022 ProteinModelPortal:Q3ABL2 STRING:Q3ABL2 GeneID:3726655
KEGG:chy:CHY_1651 PATRIC:21276423 OMA:GNREIFQ
ProtClustDB:CLSK2464724 BioCyc:CHYD246194:GJCN-1650-MONOMER
Uniprot:Q3ABL2
Length = 391
Score = 190 (71.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 50/139 (35%), Positives = 75/139 (53%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D KL G I +++ ++ +ETE T S G+A NK LAKLAS +NKP V
Sbjct: 110 DVTGSQKLFGPGAEIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVRED 169
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+V L LP++ + +G K+ L N++G+ TV D + E L++ +G G L+ +
Sbjct: 170 NVLDFLAPLPVEMLWGVGEKMKERL-NDMGIKTVQDFWELPEFFLRKKFGV-LGQNLYYL 227
Query: 235 ARGISGEEVQARLLPKSHG 253
+RGI EV +PKS G
Sbjct: 228 SRGIDFREVIPERVPKSLG 246
Score = 44 (20.5 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA +CP + +P K Y+ ++ I E S+DE
Sbjct: 55 VRSAMSLWEAARLCPHG--IFIPGNHKK-----YQEVSEKIFRIFREYTPLVEPVSLDEA 107
Query: 61 YLDLT 65
YLD+T
Sbjct: 108 YLDVT 112
>UNIPROTKB|G3V8W7 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 EMBL:CH473955
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ UniGene:Rn.92419 Ensembl:ENSRNOT00000033952
Uniprot:G3V8W7
Length = 851
Score = 170 (64.9 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q VP S+V + LPI+
Sbjct: 292 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIR 351
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + ++A G+ ++
Sbjct: 352 KVSGIG-KVTEKMLLALGIVTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL- 406
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
AR G KS R + + + LC+EL L DL++ T+T+
Sbjct: 407 AR-----DGERKSMSVERTFSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 457
Score = 72 (30.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 147 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEA 199
Query: 61 YLDLT 65
YL++T
Sbjct: 200 YLNIT 204
Score = 46 (21.3 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 396 STSEQLPDNFIDAAPLSPSGSESYSTLN 423
S E PD+ + PLSP+ +E+ STL+
Sbjct: 717 SEGEGYPDSQGKSCPLSPA-NETVSTLS 743
>UNIPROTKB|F1MHR0 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:DAAA02057088 IPI:IPI00687719
Ensembl:ENSBTAT00000012034 Uniprot:F1MHR0
Length = 701
Score = 173 (66.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 59/187 (31%), Positives = 89/187 (47%)
Query: 119 RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
RD L L G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S
Sbjct: 155 RDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPES 214
Query: 176 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+ L+ SL IK+M +G K L+ LG+++V DL F L++ G + + +
Sbjct: 215 SQELIHSLNHIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKL 273
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
+ G V P+S SF + + + + +L L R+C D R
Sbjct: 274 SFGEDDSPVTPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVCQD----GR 326
Query: 295 IAHTLTL 301
HT+ L
Sbjct: 327 KPHTIRL 333
Score = 68 (29.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 603 QQRSESWKLRI-EEIDPSVIDELPKEIQDEIQA-WLRPSKRPH 643
+Q S K+ +IDP V ELP+E+Q E+ A W R H
Sbjct: 657 EQESPDEKIAFPSDIDPEVFYELPEEVQKELLADWKRTGSDFH 699
Score = 67 (28.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 539 LLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 598
L P S + K+ + +++ + D E+N++ +P R+ T + D
Sbjct: 417 LTPSLSTTSHAGKRSFKMKDCHMEDFSKD--KETNRDF--LPTGRIESTRTGESPPDPIN 472
Query: 599 SDQIQQRSE-SWKLRIEEIDPSVIDELPKEIQDEI 632
S + + +E L E+ID V +LP +IQ+EI
Sbjct: 473 SSKEKDSNEFPVSLLPEDIDQEVFKQLPVDIQEEI 507
>FB|FBgn0037554 [details] [associations]
symbol:DNApol-iota "DNApol-iota" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE014297 GO:GO:0003684 GO:GO:0003887 GO:GO:0019985
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 KO:K03510 EMBL:AY051762 EMBL:AB049434
RefSeq:NP_649772.1 RefSeq:NP_731214.1 UniGene:Dm.9926 SMR:Q9VHV1
IntAct:Q9VHV1 MINT:MINT-308720 EnsemblMetazoa:FBtr0081797
EnsemblMetazoa:FBtr0081798 GeneID:40965 KEGG:dme:Dmel_CG7602
UCSC:CG7602-RA CTD:40965 FlyBase:FBgn0037554 InParanoid:Q9VHV1
OMA:CCAGIAY OrthoDB:EOG42RBPH GenomeRNAi:40965 NextBio:821498
Uniprot:Q9VHV1
Length = 737
Score = 173 (66.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 53/179 (29%), Positives = 89/179 (49%)
Query: 111 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
L CD +L A G I E+R ++ TC AGIA+NK+LAKL ++P QQT
Sbjct: 150 LSNCDCGCAQRL-AIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTV 208
Query: 171 VPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + + + L +K++ +G K L E G+++V L + D +++ +GF T T
Sbjct: 209 LVSTYAEQFMRELGDLKRVTGIGQKTQCLLL-EAGMSSVEQLQQCDMDVMRKKFGFETAT 267
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
L ++A G V+ PK+ G + P +++T V+ L + L E++ D
Sbjct: 268 RLRDLAFGRDTSLVRPSGKPKTIGMEDACK-PISVRT--DVEERFRMLLKRLVEQVAED 323
Score = 64 (27.6 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
EA+ +CP + LV G+ DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLVN-----GE-DLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 69 E 69
E
Sbjct: 124 E 124
Score = 47 (21.6 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 616 IDPSVIDELPKEIQDE-IQAW 635
+D V ELP E+Q E I +W
Sbjct: 669 VDAEVFKELPVELQTELIASW 689
Score = 38 (18.4 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 80 LDEVDEEALKSHILGLESKD 99
++E+ + L+S LG++ K+
Sbjct: 29 VEEIRDPTLRSKALGIQQKN 48
>UNIPROTKB|Q9KPS5 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT ProtClustDB:PRK02406
PIR:G82093 RefSeq:NP_231918.1 ProteinModelPortal:Q9KPS5
DNASU:2613209 GeneID:2613209 KEGG:vch:VC2287 PATRIC:20083613
Uniprot:Q9KPS5
Length = 360
Score = 158 (60.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R + +E T SAG+A K LAK+AS +NKP V V+ ++DSLP++K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K+ ++ G+ D+ + KL +G G LW + GI EV
Sbjct: 185 IPGVG-KVALEKLHQAGLYVGADVRRADYRKLLHQFG-RLGASLWKKSHGIDEREVVTER 242
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQ-LCEELSERL 285
KS G +F + + T + Q L EL RL
Sbjct: 243 ERKSVGVEYTFS--QNISTFQECWQVIEQKLYPELDARL 279
Score = 73 (30.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A ++CPQ+ +V P G+ +S Y++ ++ +I R E S+DE
Sbjct: 57 VRSAMPTAQALKLCPQLHVV--P---GR--MSVYKSVSQQIQTIFQRYTSLIEPLSLDEA 109
Query: 61 YLDLTDA 67
YLD++++
Sbjct: 110 YLDVSES 116
>TIGR_CMR|VC_2287 [details] [associations]
symbol:VC_2287 "DNA-damage-inducible protein P" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT
ProtClustDB:PRK02406 PIR:G82093 RefSeq:NP_231918.1
ProteinModelPortal:Q9KPS5 DNASU:2613209 GeneID:2613209
KEGG:vch:VC2287 PATRIC:20083613 Uniprot:Q9KPS5
Length = 360
Score = 158 (60.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R + +E T SAG+A K LAK+AS +NKP V V+ ++DSLP++K
Sbjct: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K+ ++ G+ D+ + KL +G G LW + GI EV
Sbjct: 185 IPGVG-KVALEKLHQAGLYVGADVRRADYRKLLHQFG-RLGASLWKKSHGIDEREVVTER 242
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQ-LCEELSERL 285
KS G +F + + T + Q L EL RL
Sbjct: 243 ERKSVGVEYTFS--QNISTFQECWQVIEQKLYPELDARL 279
Score = 73 (30.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A ++CPQ+ +V P G+ +S Y++ ++ +I R E S+DE
Sbjct: 57 VRSAMPTAQALKLCPQLHVV--P---GR--MSVYKSVSQQIQTIFQRYTSLIEPLSLDEA 109
Query: 61 YLDLTDA 67
YLD++++
Sbjct: 110 YLDVSES 116
>UNIPROTKB|F1NCT7 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
EMBL:AADN02067159 EMBL:AADN02067160 EMBL:AADN02067161
IPI:IPI00680100 Ensembl:ENSGALT00000032848 ArrayExpress:F1NCT7
Uniprot:F1NCT7
Length = 543
Score = 190 (71.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 88/324 (27%), Positives = 143/324 (44%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G AK++CP + +V P+ + YR EV ILA +DE
Sbjct: 148 VRAAMPGFIAKKLCPHLTIV--PL-----NFEKYRKVSKEVKEILAEYDPHFMPMGLDEA 200
Query: 61 YLDLTDAAEAMLAETPPES----LD-EVDEEALKSHILGLESKD----GNDSKATVKE-- 109
YL++T+ E L P + L+ E E + E+K G S + E
Sbjct: 201 YLNVTEHLEERL-NWPEDKRRYFLNTENTTEKIYLQFTEYETKVMPKYGYSSSPELFEDG 259
Query: 110 -WLCRCDADHRDKLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
+ D+ RD+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S
Sbjct: 260 TSVMDDDSGQRDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSD 319
Query: 162 MNKPAQQTTV-PF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 219
NKP Q + P +V + LPI+K+ +G K+ + LG+ T +L + +
Sbjct: 320 RNKPNGQCRISPERQAVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRA 375
Query: 220 QESYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
S F+ +W +I+ G+ ++ G KS R ++ + + L
Sbjct: 376 LLSLLFSEASWRSFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-L 428
Query: 278 CEELSERLCSDLEQNKRIAHTLTL 301
C+EL L DL++ T+TL
Sbjct: 429 CQELCRELAQDLQKEGLKGKTVTL 452
>UNIPROTKB|E2RAS5 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ EMBL:AAEX03002157 Ensembl:ENSCAFT00000014935
Uniprot:E2RAS5
Length = 871
Score = 171 (65.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 52/177 (29%), Positives = 84/177 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 301 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIR 360
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W +I+ G+
Sbjct: 361 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHHFLHISLGLGS---- 412
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
L G KS R ++ + N LC+EL L DL++ T+T+
Sbjct: 413 THLASSRDGERKSMSVERTFSEISKAEEQYN-LCQELCSELAQDLQKEGLKGRTVTI 468
Score = 70 (29.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR +EV ILA A S+DE
Sbjct: 156 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSTEVKEILADYDPNFLAMSLDEA 208
Query: 61 YLDLT 65
YL++T
Sbjct: 209 YLNIT 213
>UNIPROTKB|Q5JTF2 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006301 GO:GO:0003887 GO:GO:0006290 EMBL:AL353602
EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181 HOGENOM:HOG000115605
IPI:IPI00646080 SMR:Q5JTF2 STRING:Q5JTF2 Ensembl:ENST00000443535
Uniprot:Q5JTF2
Length = 72
Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 66 DAAEAML 72
A + L
Sbjct: 61 SAVQERL 67
>ASPGD|ASPL0000012133 [details] [associations]
symbol:AN3909 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017956 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 SMART:SM00384 InterPro:IPR001357 GO:GO:0000287
GO:GO:0003684 GO:GO:0006281 EMBL:BN001302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000064 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 InterPro:IPR025527 Pfam:PF14377 KO:K03515
OrthoDB:EOG49PF6V RefSeq:XP_661513.1 ProteinModelPortal:Q5B6C1
STRING:Q5B6C1 EnsemblFungi:CADANIAT00004788 GeneID:2873330
KEGG:ani:AN3909.2 HOGENOM:HOG000216225 OMA:SAEVNWG Uniprot:Q5B6C1
Length = 1139
Score = 185 (70.2 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 53/167 (31%), Positives = 84/167 (50%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +LR + +ET S GI N + AK+A KPA Q + +V + LP++ +
Sbjct: 477 VAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGELPVQNL 536
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G L L+ +LGV V D+ S +KL S G TG L + ARGI EV +
Sbjct: 537 PGVGYSLSAKLE-DLGVKIVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEVGNEVT 595
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + ++ G R + T + ++ LCEEL RL +L + +++
Sbjct: 596 RKSVSAEVNW-GIRFV-TQDQAEDFMRSLCEELHRRLVENLMKGQQL 640
Score = 51 (23.0 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVV-SILARKGRCERASIDEVYLDL 64
M+G A + CP + ++ P D +Y A + +IL G + SIDE +D+
Sbjct: 397 MKG--ALQACPDLRVL--PY-----DFPAYEEASRKFYRAILGIDGLVQSVSIDEALVDI 447
Query: 65 T 65
T
Sbjct: 448 T 448
Score = 49 (22.3 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 617 DPSVIDELPKEIQDEIQAWLRP 638
DP+V+ ELP +I+ ++ A +P
Sbjct: 787 DPAVVAELPDDIRSKLVAQGKP 808
Score = 45 (20.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 615 EIDPSVIDELPKEIQDEIQAWL-RPS 639
++DP + ELP+++ E+ + +PS
Sbjct: 837 QLDPETLAELPEDVLAEVLGYYNQPS 862
Score = 40 (19.1 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 581 KERLAEAATTSTSTDRC-GSDQIQQRSESWKLRIEEIDPS---VIDEL--PKEIQDEIQA 634
+ RL T ST+ R +D+ + + + + + P L P +++DE A
Sbjct: 967 RSRLLHQRTASTTAPRTVPADRGHSQHQEKHINLPNLPPRPTFTSKRLSNPSDLRDEATA 1026
Query: 635 W 635
W
Sbjct: 1027 W 1027
>UNIPROTKB|J9P5L3 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03511 CTD:51426
EMBL:AAEX03002157 RefSeq:XP_536321.2 Ensembl:ENSCAFT00000046862
GeneID:479180 KEGG:cfa:479180 Uniprot:J9P5L3
Length = 861
Score = 168 (64.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 53/177 (29%), Positives = 86/177 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIR 352
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHHFLHISLGLGSTHL- 407
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
AR G KS R ++ + N LC+EL L DL++ T+T+
Sbjct: 408 AR-----DGERKSMSVERTFSEISKAEEQYN-LCQELCSELAQDLQKEGLKGRTVTI 458
Score = 70 (29.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR +EV ILA A S+DE
Sbjct: 148 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSTEVKEILADYDPNFLAMSLDEA 200
Query: 61 YLDLT 65
YL++T
Sbjct: 201 YLNIT 205
>UNIPROTKB|Q81M86 [details] [associations]
symbol:dinB "DNA polymerase IV" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 143 (55.4 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I ++ +L E + CS GIA N LAK AS M KP T + + ++ LP+ M
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 189
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L N++ + T+ L K +E ++ G + G L A+G+ EV +
Sbjct: 190 HGIGEKTAEKL-NDIHIQTIEQLAKGNEHIIRAKIGKH-GVDLQRRAKGMDDREVDPSQM 247
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+ G S + + + L +L + +S+RL
Sbjct: 248 GQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSKRL 284
Score = 86 (35.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 66
EAK +CPQ+ +V+ P + + YR A ++ IL+R + + SIDE YLD+TD
Sbjct: 70 EAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>TIGR_CMR|BA_4366 [details] [associations]
symbol:BA_4366 "DNA-damage-inducible protein P, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 143 (55.4 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I ++ +L E + CS GIA N LAK AS M KP T + + ++ LP+ M
Sbjct: 130 IAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEMIWPLPVGAM 189
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L N++ + T+ L K +E ++ G + G L A+G+ EV +
Sbjct: 190 HGIGEKTAEKL-NDIHIQTIEQLAKGNEHIIRAKIGKH-GVDLQRRAKGMDDREVDPSQM 247
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+ G S + + + L +L + +S+RL
Sbjct: 248 GQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSKRL 284
Score = 86 (35.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTD 66
EAK +CPQ+ +V+ P + + YR A ++ IL+R + + SIDE YLD+TD
Sbjct: 70 EAKRLCPQL-IVRRP------NFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD 120
>MGI|MGI:1349767 [details] [associations]
symbol:Polk "polymerase (DNA directed), kappa" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=TAS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 MGI:MGI:1349767 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
CleanEx:MM_POLK PDB:4FJO PDBsum:4FJO GeneTree:ENSGT00530000062942
HOGENOM:HOG000082711 KO:K03511 CTD:51426 HOVERGEN:HBG101212
OMA:TCTELYQ OrthoDB:EOG4Z8XVV EMBL:AB027563 EMBL:AF163571
EMBL:AB040765 EMBL:BC052820 IPI:IPI00131620 IPI:IPI00462547
RefSeq:NP_036178.1 UniGene:Mm.89926 PDB:2LSJ PDBsum:2LSJ
ProteinModelPortal:Q9QUG2 SMR:Q9QUG2 IntAct:Q9QUG2 STRING:Q9QUG2
PhosphoSite:Q9QUG2 PRIDE:Q9QUG2 Ensembl:ENSMUST00000022172
GeneID:27015 KEGG:mmu:27015 UCSC:uc007rne.1 InParanoid:Q9QUG2
NextBio:304949 Bgee:Q9QUG2 Genevestigator:Q9QUG2
GermOnline:ENSMUSG00000021668 Uniprot:Q9QUG2
Length = 852
Score = 170 (64.9 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
Identities = 54/177 (30%), Positives = 89/177 (50%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P S+V + LPI+
Sbjct: 292 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIR 351
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +IA G+ ++
Sbjct: 352 KVSGIG-KVTEKMLMALGIVTCTELY---QQRALLSLLFSETSWHYFLHIALGLGSTDL- 406
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
AR G KS R ++ + + LC+EL L DL++ T+T+
Sbjct: 407 AR-----DGERKSMSVERTFSEISKTEEQYS-LCQELCAELAHDLQKEGLKGRTVTI 457
Score = 72 (30.4 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 147 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEA 199
Query: 61 YLDLT 65
YL++T
Sbjct: 200 YLNIT 204
Score = 37 (18.1 bits), Expect = 8.4e-11, Sum P(3) = 8.4e-11
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 563 NSTGDCLSESNQNQVNIPKE 582
+STGD L ++++ ++ P E
Sbjct: 540 SSTGDSLDKTDKTELAKPLE 559
>UNIPROTKB|F1S2I2 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03511 CTD:51426 OMA:TCTELYQ EMBL:CU466449 RefSeq:XP_003123756.1
Ensembl:ENSSSCT00000015383 GeneID:100518650 KEGG:ssc:100518650
Uniprot:F1S2I2
Length = 878
Score = 168 (64.2 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 54/177 (30%), Positives = 86/177 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPFSSV-KGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P V + LPI+
Sbjct: 300 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQVVMDFIKDLPIR 359
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T DL + + S F+ +W + +I+ G+
Sbjct: 360 KVSGIG-KVTEKMLKALGIITCTDLY---QQRALLSLLFSETSWHYFLHISLGLG----- 410
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ LP+ G KS R + + + LC+EL L DL++ T+TL
Sbjct: 411 STCLPRD-GERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKEGLKGRTVTL 465
Score = 70 (29.7 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V +M G AK +CPQ L+ VP + YR SEV I A A S+DE
Sbjct: 155 VRGAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSSEVKEIFADYDPNFMALSLDEA 207
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 208 YLNITKHLE 216
Score = 41 (19.5 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 410 PLSPSGSESYSTLNSTELQNELPGEQVWIEH 440
P + G ++ S +S E + LP + + +EH
Sbjct: 718 PSNAEGVDASSNKHSEEECSNLPSKSLHMEH 748
>TIGR_CMR|CPS_1040 [details] [associations]
symbol:CPS_1040 "DNA polymerase IV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00278
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 RefSeq:YP_267789.1
HSSP:Q9UNA4 ProteinModelPortal:Q487H6 STRING:Q487H6 GeneID:3521759
KEGG:cps:CPS_1040 PATRIC:21465357 OMA:QSLGMRT
BioCyc:CPSY167879:GI48-1126-MONOMER Uniprot:Q487H6
Length = 352
Score = 138 (53.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/124 (31%), Positives = 58/124 (46%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R + E T SAGIA NK LAK+AS NKP Q + V ++ L +KK
Sbjct: 123 LIAERIRADIFNELNLTASAGIAPNKFLAKIASDENKPNGQCVITPDKVANFVEQLSLKK 182
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L N G T D+ + + LQ G + L+ + G+ +++
Sbjct: 183 IPGIGPKTFEKL-NRHGYVTCADVRQSNIRALQNIVGKFANS-LYLKSHGVDNRDLEVSR 240
Query: 248 LPKS 251
KS
Sbjct: 241 QRKS 244
Score = 87 (35.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +AK++CP +++V G+ D+ Y+ + I +R E S+DE
Sbjct: 55 VRSAMPAIKAKQLCPHLKIVH-----GRMDV--YKETSKNIREIFSRYTDLIEPLSLDEA 107
Query: 61 YLDLTDA 67
YLD+TDA
Sbjct: 108 YLDVTDA 114
>UNIPROTKB|Q71Y46 [details] [associations]
symbol:dinB "DNA polymerase IV" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:YP_014591.1 ProteinModelPortal:Q71Y46 STRING:Q71Y46
GeneID:2798339 KEGG:lmf:LMOf2365_1998 PATRIC:20325291
Uniprot:Q71Y46
Length = 356
Score = 163 (62.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 52/182 (28%), Positives = 83/182 (45%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D K + ++ E++ + +E T SAG++ NK +AK+AS KPA T V
Sbjct: 111 DVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPE 170
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE-DKLQESYGFNTGTWLWN 233
+ L+ +P+ K +G K+ + LG+ T DL K+SE D ++E + G L+
Sbjct: 171 EAEAFLEQIPVTKFYGVG-KVTAEKLHRLGIETGADLKKWSEWDLIRELH--KHGYHLYR 227
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
RG S V KS G +F L + Q L Q +++ ERL + K
Sbjct: 228 HVRGRSNNIVNPHRDRKSVGKETTFEF-NVLDSRVLEQS-LMQFAKKVEERLIKLQKHGK 285
Query: 294 RI 295
+
Sbjct: 286 TV 287
Score = 58 (25.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A ++CP + +++ Y +++ I +R E S+DE
Sbjct: 56 VHSAMPTRQAAKLCPNGIFIH-------GNMAHYVEVSNQIREIFSRYTDIIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAET 75
YLD+T+ + M + T
Sbjct: 109 YLDVTENKKGMKSAT 123
>UNIPROTKB|D6RAE5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CH471084
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
HOGENOM:HOG000082711 UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424
IPI:IPI00966124 SMR:D6RAE5 Ensembl:ENST00000503479 Uniprot:D6RAE5
Length = 396
Score = 152 (58.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 227 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 286
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 287 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 342
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
G KS R + + + LC+EL L DL++ +
Sbjct: 343 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 384
Score = 71 (30.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 82 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 134
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 135 YLNITKHLE 143
>UNIPROTKB|Q5Q9G8 [details] [associations]
symbol:POLK "Polymerase kappa isoform 1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 UniGene:Hs.732105 HGNC:HGNC:9183
HOVERGEN:HBG101212 EMBL:AC026424 EMBL:AY769929 IPI:IPI01013677
SMR:Q5Q9G8 STRING:Q5Q9G8 Ensembl:ENST00000380481 Uniprot:Q5Q9G8
Length = 780
Score = 160 (61.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 203 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 262
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 263 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 318
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
G KS R + + + LC+EL L DL++ + T+T+
Sbjct: 319 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKERLKGRTVTI 368
Score = 71 (30.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 58 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 110
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 111 YLNITKHLE 119
>UNIPROTKB|Q9UBT6 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IMP]
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 EMBL:CH471084 EMBL:AB036934
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 KO:K03511
EMBL:AB027564 EMBL:AF163570 EMBL:AF194973 EMBL:AF315602
EMBL:AF318313 EMBL:AK091659 EMBL:AK314610 EMBL:AY273797
EMBL:BC014955 EMBL:BC050718 EMBL:AB036935 IPI:IPI00033151
IPI:IPI00218100 IPI:IPI00552440 IPI:IPI00552703 RefSeq:NP_057302.1
UniGene:Hs.732105 PDB:1T94 PDB:2OH2 PDB:2W7O PDB:2W7P PDB:3IN5
PDB:3PZP PDBsum:1T94 PDBsum:2OH2 PDBsum:2W7O PDBsum:2W7P
PDBsum:3IN5 PDBsum:3PZP ProteinModelPortal:Q9UBT6 SMR:Q9UBT6
IntAct:Q9UBT6 STRING:Q9UBT6 PhosphoSite:Q9UBT6 DMDM:59798438
PaxDb:Q9UBT6 PRIDE:Q9UBT6 Ensembl:ENST00000241436
Ensembl:ENST00000352007 Ensembl:ENST00000508526
Ensembl:ENST00000510815 Ensembl:ENST00000515295 GeneID:51426
KEGG:hsa:51426 UCSC:uc003kdw.3 UCSC:uc003keb.3 UCSC:uc010izq.3
CTD:51426 GeneCards:GC05P074843 HGNC:HGNC:9183 MIM:605650
neXtProt:NX_Q9UBT6 PharmGKB:PA33503 HOVERGEN:HBG101212
InParanoid:Q9UBT6 OMA:TCTELYQ OrthoDB:EOG4Z8XVV BindingDB:Q9UBT6
ChEMBL:CHEMBL5365 EvolutionaryTrace:Q9UBT6 GenomeRNAi:51426
NextBio:54977 ArrayExpress:Q9UBT6 Bgee:Q9UBT6 Genevestigator:Q9UBT6
Uniprot:Q9UBT6
Length = 870
Score = 160 (61.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
G KS R + + + LC+EL L DL++ + T+T+
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKERLKGRTVTI 458
Score = 71 (30.1 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 148 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 200
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 201 YLNITKHLE 209
>UNIPROTKB|Q5Q9G5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 EMBL:AY769932
IPI:IPI00967663 SMR:Q5Q9G5 STRING:Q5Q9G5 Ensembl:ENST00000504026
UCSC:uc003kee.3 HOVERGEN:HBG056846 Uniprot:Q5Q9G5
Length = 461
Score = 152 (58.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
G KS R + + + LC+EL L DL++ +
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 450
Score = 71 (30.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 148 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 200
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 201 YLNITKHLE 209
>UNIPROTKB|Q5Q9G7 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 HOVERGEN:HBG056846
EMBL:AY769930 IPI:IPI00965083 SMR:Q5Q9G7 STRING:Q5Q9G7
Ensembl:ENST00000509126 Uniprot:Q5Q9G7
Length = 489
Score = 152 (58.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + +I+ G+ +
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHYFLHISLGLGSTHLT 408
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
G KS R + + + LC+EL L DL++ +
Sbjct: 409 R------DGERKSMSVERTFSEINKAEEQYS-LCQELCSELAQDLQKER 450
Score = 71 (30.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 148 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 200
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 201 YLNITKHLE 209
>TAIR|locus:2031050 [details] [associations]
symbol:AT1G49980 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IDA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 EMBL:CP002684 GO:GO:0016020 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03511 OMA:VHVDCDA HOGENOM:HOG000082709 EMBL:AY508701
IPI:IPI00540157 RefSeq:NP_175420.3 UniGene:At.43723 HSSP:Q97W02
ProteinModelPortal:Q6JDV7 SMR:Q6JDV7 EnsemblPlants:AT1G49980.1
GeneID:841422 KEGG:ath:AT1G49980 TAIR:At1g49980 InParanoid:Q6JDV7
PhylomeDB:Q6JDV7 ProtClustDB:CLSN2681525 Genevestigator:Q6JDV7
Uniprot:Q6JDV7
Length = 671
Score = 168 (64.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 54/185 (29%), Positives = 92/185 (49%)
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSV 176
R++ L+ G I ELR V ET TCSAG+A N++LAK+ S +NKP Q + S+V
Sbjct: 211 RERGLSGGE-IAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTV 269
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
+ LP++K+ +G L++ LG+ T ++++ L + ++ + ++
Sbjct: 270 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQ-KGSLLYALFSQSSADFFLSVGL 328
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 296
G+ G P+ S KS R + ++L +EL+E L D+++ A
Sbjct: 329 GLGGTNT-----PQVR-SRKSISSERTFAATGDERLLYSKL-DELAEMLSHDMKKEGLTA 381
Query: 297 HTLTL 301
TLTL
Sbjct: 382 RTLTL 386
Score = 57 (25.1 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASIDE 59
V ++M G A+++CP +L+ VPV D + Y + S++ + R S+DE
Sbjct: 150 VRAAMPGFIARKLCP--DLIFVPV-----DFTKYTHY-SDLTRKVFRNYDPHFIAGSLDE 201
Query: 60 VYLDLTD 66
YLD+T+
Sbjct: 202 AYLDITE 208
>UNIPROTKB|A6QNV6 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ OrthoDB:EOG4Z8XVV
EMBL:DAAA02027742 EMBL:DAAA02027743 EMBL:BC149024 IPI:IPI00867010
RefSeq:NP_001095728.1 UniGene:Bt.38144 SMR:A6QNV6 STRING:A6QNV6
Ensembl:ENSBTAT00000005265 GeneID:541218 KEGG:bta:541218
InParanoid:A6QNV6 NextBio:20879073 Uniprot:A6QNV6
Length = 877
Score = 162 (62.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 52/177 (29%), Positives = 86/177 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 300 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 359
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W +I+ G+ +
Sbjct: 360 KVSGIG-KVTEKMLKALGIITCTELY---QQRALLSLLFSETSWHHFLHISLGLGSTHL- 414
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
AR G KS R ++ + + LC+EL L DL++ T+T+
Sbjct: 415 AR-----DGERKSMSVERTFSEISKAEEQYS-LCQELCSELAQDLQKKGLKGRTVTI 465
Score = 62 (26.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + Y+ EV IL A S+DE
Sbjct: 155 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYQAVSREVKEILTDYDPNFMAMSLDEA 207
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 208 YLNITKHLE 216
>UNIPROTKB|Q74CQ6 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 156 (60.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+I E++ ++ TCS GIA NK+LAKLAS M KP T +P +V L+ + PI+
Sbjct: 123 VIAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVASLMKTTPIRS 182
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+ +G L+ LG++T DL FS L +G G L + +GI V
Sbjct: 183 LCGIGPSTEQRLKY-LGISTCNDLGHFSSKILTRHFGA-MGARLKQMGQGIDDSPV 236
Score = 56 (24.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V + M EAK +CP++ LV + + Y + +L + E SIDE
Sbjct: 55 VGTGMTTHEAKRLCPELILV---IGNNR----EYTRISKLIFEMLGQFTPLVEVFSIDEA 107
Query: 61 YLDLT 65
+LDLT
Sbjct: 108 FLDLT 112
>TIGR_CMR|GSU_1616 [details] [associations]
symbol:GSU_1616 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 156 (60.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+I E++ ++ TCS GIA NK+LAKLAS M KP T +P +V L+ + PI+
Sbjct: 123 VIAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVASLMKTTPIRS 182
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+ +G L+ LG++T DL FS L +G G L + +GI V
Sbjct: 183 LCGIGPSTEQRLKY-LGISTCNDLGHFSSKILTRHFGA-MGARLKQMGQGIDDSPV 236
Score = 56 (24.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V + M EAK +CP++ LV + + Y + +L + E SIDE
Sbjct: 55 VGTGMTTHEAKRLCPELILV---IGNNR----EYTRISKLIFEMLGQFTPLVEVFSIDEA 107
Query: 61 YLDLT 65
+LDLT
Sbjct: 108 FLDLT 112
>UNIPROTKB|Q8AWW1 [details] [associations]
symbol:DINB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0019985 "translesion synthesis" evidence=TAS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005654 GO:GO:0003684 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0006297 GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 EMBL:AY118271 IPI:IPI00586140
RefSeq:NP_989514.1 UniGene:Gga.42393 SMR:Q8AWW1 STRING:Q8AWW1
Ensembl:ENSGALT00000024123 GeneID:374003 KEGG:gga:374003
InParanoid:Q8AWW1 NextBio:20813531 Uniprot:Q8AWW1
Length = 867
Score = 179 (68.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 83/322 (25%), Positives = 143/322 (44%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V ++M G AK++CP + +V + + + + +E G +DE Y
Sbjct: 149 VRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMG------LDEAY 202
Query: 62 LDLTDAAEAML--AETP------PESLDEVDEEALKSHILGLESKDGNDSKATVKE---W 110
L++T+ E L E E+ E ++E + +I G + DG S + E
Sbjct: 203 LNVTEHLEERLNWPEDKRRYFLNTENTTEKNKEDI--NIPGTVNIDGYSSSPELFEDGTS 260
Query: 111 LCRCDADHRDKLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
+ D+ RD+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S N
Sbjct: 261 VMDDDSGQRDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRN 320
Query: 164 KPAQQTTV-PF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP Q + P +V + LPI+K+ +G K+ + LG+ T +L + +
Sbjct: 321 KPNGQCRISPERQAVLDFIKDLPIRKVPGIG-KVTEKMLKALGIVTCSELY---QQRALL 376
Query: 222 SYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCE 279
S F+ +W +I+ G+ ++ G KS R ++ + + LC+
Sbjct: 377 SLLFSEASWRSFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LCQ 429
Query: 280 ELSERLCSDLEQNKRIAHTLTL 301
EL L DL++ T+TL
Sbjct: 430 ELCRELAQDLQKEGLKGKTVTL 451
Score = 41 (19.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 22/111 (19%), Positives = 42/111 (37%)
Query: 545 CLSESNKKQVNIPKERLDNSTGDCLSESN-QNQVNIPKERLAEAATTSTSTDRCGSDQIQ 603
C E + + E ++ +CL+ S ++ V I K L+ T C ++ I
Sbjct: 618 CFEEQSSSNL----EEINRHVDECLAGSLVEDTVEISKNDLSRE-NTFNFLSHCKNENID 672
Query: 604 QRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLR-PSKRPHRVKQGFTIAD 653
E+ ++ S + + + S++PHR KQ + D
Sbjct: 673 DCKENVTDQLAGTGQSASTSENSSGNSRDKKFTQIVSEKPHREKQPGDLID 723
>POMBASE|SPBC1347.01c [details] [associations]
symbol:rev1 "deoxycytidyl transferase Rev1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005819 "spindle" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=ISO] [GO:0043504
"mitochondrial DNA repair" evidence=IC] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 PomBase:SPBC1347.01c Pfam:PF00533 GO:GO:0005739
GO:GO:0005730 GO:GO:0005819 GO:GO:0000287 GO:GO:0003684
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 GO:GO:0043504
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
KO:K03515 RefSeq:NP_596693.2 ProteinModelPortal:O94623
IntAct:O94623 STRING:O94623 EnsemblFungi:SPBC1347.01c.1
GeneID:2539723 KEGG:spo:SPBC1347.01c OMA:FHIDFDC OrthoDB:EOG49PF6V
NextBio:20800875 Uniprot:O94623
Length = 935
Score = 159 (61.0 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R QV ++T S GI N +LA+LA KP ++ +V +L L ++ +
Sbjct: 397 IAESIRSQVREKTNCEVSVGIGPNVLLARLALRKAKPHNVYSLSIENVFDVLSPLSVQDL 456
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
+G L N GV T+G L + + LQE++G N G L+NI+RGI
Sbjct: 457 PGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQETFGVNYGLHLYNISRGI 506
Score = 55 (24.4 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASIDEVYLDLTDAA 68
AK +CP + +V D +Y + E +IL + SIDE LD+T +
Sbjct: 336 AKNLCPSLRVVDY-------DFGAYESVSREFYTILVNTLHDYIKVISIDEALLDITSSV 388
Query: 69 EA 70
+
Sbjct: 389 SS 390
Score = 51 (23.0 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 615 EIDPSVIDELPKEIQDEIQAWLRPSKR 641
+I S + +LP +Q +IQ LR KR
Sbjct: 695 QISSSALAQLPPSMQSDIQQQLRLQKR 721
Score = 47 (21.6 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 570 SESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKL-RIEE---------IDPS 619
+E N N +RL+ + D G +I+Q + KL +I + +D
Sbjct: 744 NEVNDNHEIAMNKRLSLKSHADNKIDERGKKKIRQENAFDKLLQISKKSKTINKPNVDYL 803
Query: 620 VIDELPKEIQDEI 632
+ ELPK++Q +I
Sbjct: 804 TLKELPKDLQKQI 816
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 549 SNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSES 608
S KKQ++ PK L ST L S+Q I LA+ + S + Q++ + S
Sbjct: 673 SQKKQLS-PK--LIPSTPYDLPSSSQ----ISSSALAQLPPSMQSDIQ---QQLRLQKRS 722
Query: 609 WKLRIEEIDPSVIDELPKEIQDEI 632
++DP + ELP I++E+
Sbjct: 723 ITEYPSQLDPLFMVELPTPIRNEV 746
>UNIPROTKB|F1MAB3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00372895 Ensembl:ENSRNOT00000040799
ArrayExpress:F1MAB3 Uniprot:F1MAB3
Length = 711
Score = 170 (64.9 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q VP S+V + LPI+
Sbjct: 156 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIR 215
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQ 244
K+ +G K+ + LG+ T +L + + S F+ +W + ++A G+ ++
Sbjct: 216 KVSGIG-KVTEKMLLALGIVTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL- 270
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
AR G KS R + + + LC+EL L DL++ T+T+
Sbjct: 271 AR-----DGERKSMSVERTFSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 321
Score = 46 (21.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 396 STSEQLPDNFIDAAPLSPSGSESYSTLN 423
S E PD+ + PLSP+ +E+ STL+
Sbjct: 581 SEGEGYPDSQGKSCPLSPA-NETVSTLS 607
>UNIPROTKB|J3KRG0 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000580880 Uniprot:J3KRG0
Length = 145
Score = 97 (39.2 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT +
Sbjct: 95 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 143
Score = 91 (37.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 5 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 58
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLES 97
E L + +S DE+ + H+ +S
Sbjct: 59 EKRLQQL--QS-DELSAVTVSGHVYNNQS 84
>POMBASE|SPCC553.07c [details] [associations]
symbol:kpa1 "DinB translesion DNA repair polymerase, pol
kappa" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISM]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0019985 "translesion synthesis" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 PomBase:SPCC553.07c
GO:GO:0005829 GO:GO:0007126 GO:GO:0000077 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0000790 GO:GO:0003887 GO:GO:0019985 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:Q9UHC5 KO:K03511
PIR:T41397 RefSeq:NP_587767.2 ProteinModelPortal:O74944
STRING:O74944 EnsemblFungi:SPCC553.07c.1 GeneID:2539547
KEGG:spo:SPCC553.07c OMA:VHVDCDA OrthoDB:EOG441TMM NextBio:20800707
Uniprot:O74944
Length = 547
Score = 149 (57.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 83 VDEEALKSHILG--LESKDGNDSKATVKEWLCRCDADHRDKLLACGV----LIVTELRMQ 136
+ E A+KS + L D N A++ E+ + R + LA V ++V ++R Q
Sbjct: 199 LSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQ 258
Query: 137 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV--KGLLDSLPIKKMKQLGGK 194
V +ET T S GIA NK+LAK+AS KP Q +PF + ++ LP++++ +G
Sbjct: 259 VHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRV 318
Query: 195 LGTSLQNELGVTTVGDL 211
L L L + T GD+
Sbjct: 319 LEQQLLG-LEIKTCGDI 334
Score = 139 (54.0 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 40/114 (35%), Positives = 60/114 (52%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV--KGLLDSLPI 185
++V ++R QV +ET T S GIA NK+LAK+AS KP Q +PF + ++ LP+
Sbjct: 250 MVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPV 309
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGD------------LLKFSEDKLQESYGFNT 227
+++ +G L L L + T GD L K ++ L+ SYGF T
Sbjct: 310 REVSGIGRVLEQQLLG-LEIKTCGDIQRNLVILSYIFLPKSFQNLLRCSYGFGT 362
Score = 75 (31.5 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR--KGRCERASIDE 59
V S+M A+++CP +LV +P+ +LS Y E+ ++LA+ C ASIDE
Sbjct: 176 VRSAMPEFIARKICP--DLVVIPL-----NLSEYAIKSKEIQNVLAQYDSNLCP-ASIDE 227
Query: 60 VYLDLT 65
Y++LT
Sbjct: 228 FYMNLT 233
>UNIPROTKB|F1STE9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:FP326722 EMBL:CU972417 EMBL:CU694748
Ensembl:ENSSSCT00000008958 Uniprot:F1STE9
Length = 1253
Score = 143 (55.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 44/163 (26%), Positives = 78/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+RM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 593 VRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVG 652
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 653 RSMESKLMS-LGIRTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 711
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + + +L L EE+ RL + + KR+
Sbjct: 712 SAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLETAGVKGKRL 752
Score = 63 (27.2 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA- 67
+AK++CP ++ V P D +Y+ + LA E S DE +D+T+
Sbjct: 527 QAKQLCPSLQAV--PY-----DFHAYKEVARTMYETLASYTHNIEAVSCDEALVDITEIL 579
Query: 68 AEAMLAETPPESLDEVDEE 86
AE L TP E + V E
Sbjct: 580 AETRL--TPDEFANAVRME 596
Score = 62 (26.9 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 615 EIDPSVIDELPKEIQDEI-QAWLRPSKRPHRVKQ 647
++DPSV++ LP ++++++ Q P PH K+
Sbjct: 938 QLDPSVLEALPPDLREQVEQVCAVPQAEPHGDKK 971
Score = 52 (23.4 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 1016 QVDPEVFAALPAELQKELKA 1035
>MGI|MGI:1347081 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1347081 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201
HOGENOM:HOG000234325 HOVERGEN:HBG053634 KO:K03510 OrthoDB:EOG46T310
EMBL:AF151691 EMBL:AY515316 EMBL:AY515317 EMBL:BC082278
IPI:IPI00553425 IPI:IPI00985545 RefSeq:NP_001129562.1
UniGene:Mm.244352 PDB:2KWU PDB:2KWV PDB:3AI4 PDBsum:2KWU
PDBsum:2KWV PDBsum:3AI4 ProteinModelPortal:Q6R3M4 SMR:Q6R3M4
IntAct:Q6R3M4 STRING:Q6R3M4 PhosphoSite:Q6R3M4 PRIDE:Q6R3M4
Ensembl:ENSMUST00000043286 Ensembl:ENSMUST00000161542 GeneID:26447
KEGG:mmu:26447 UCSC:uc008foi.2 UCSC:uc008fok.2 InParanoid:Q6R3M4
BindingDB:Q6R3M4 ChEMBL:CHEMBL5159 NextBio:304545 Bgee:Q6R3M4
CleanEx:MM_POLI Genevestigator:Q6R3M4 GermOnline:ENSMUSG00000038425
Uniprot:Q6R3M4
Length = 717
Score = 153 (58.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 53/180 (29%), Positives = 82/180 (45%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ S
Sbjct: 173 LVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHS 232
Query: 183 LP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IK++ +G K L+ LG+ +V DL F L++ G + ++ G
Sbjct: 233 LNHIKEIPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKS 291
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 292 PVTPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCQD----GRKPHTVRL 344
Score = 108 (43.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 60/209 (28%), Positives = 93/209 (44%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DLS YR +V +L ER DE ++DLT+
Sbjct: 83 DAKEKCPQLVLVN-----GE-DLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMV 136
Query: 69 EAMLAETPPESLDEV-------DEEALKSH-ILGLESKDGNDSKATVKE------WLCRC 114
E L + P E + V + +++ H I+ G+ A ++E L C
Sbjct: 137 EKRLQQLPSEEVPSVTVFGHVYNNQSVNLHNIMHRRLVVGSQIAAEMREAMYNQLGLTGC 196
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN-KPAQQTTV-P 172
+KLLA V V + Q + E +C + H+ K G+ K A++ V
Sbjct: 197 AGVAPNKLLAKLVSGVFKPNQQTVLLPE-SCQH-LIHSLNHIKEIPGIGYKTAKRLEVLG 254
Query: 173 FSSVKGLLDSLPIKKM-KQLGGKLGTSLQ 200
+SV L + PIK + K+LG + +Q
Sbjct: 255 INSVHDL-QTFPIKTLEKELGIAIAQRIQ 282
Score = 68 (29.0 bits), Expect = 7.3e-09, Sum P(3) = 7.3e-09
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 615 EIDPSVIDELPKEIQDEIQA-WLRP-SKRP--HR 644
+IDP V ELP+E+Q E+ A W R + RP HR
Sbjct: 684 DIDPQVFYELPEEVQKELMAEWERAGAARPSAHR 717
Score = 63 (27.2 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 562 DNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDR-CGSDQIQQRSESWKLRIEEIDPSV 620
D T D E N +P R+ T + D C + + E +D V
Sbjct: 445 DTHTEDSHKEKEANWDCLPSRRIESTGTGESPLDATCFPKEKDTSDLPLQALPEGVDQEV 504
Query: 621 IDELPKEIQDEI 632
+LP +IQ+EI
Sbjct: 505 FKQLPADIQEEI 516
Score = 37 (18.1 bits), Expect = 7.3e-09, Sum P(3) = 7.3e-09
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 403 DNFIDAAPLSPSGSESYSTLNSTELQN 429
D+ A S G ES+ L S EL +
Sbjct: 648 DSHKQTATASHQGLESHQGLESRELDS 674
>UNIPROTKB|F1P5H4 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0009411
"response to UV" evidence=IEA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IEA] [GO:0042276 "error-prone
translesion synthesis" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:AADN02017696 EMBL:AADN02017697 IPI:IPI01017381
Ensembl:ENSGALT00000027069 Uniprot:F1P5H4
Length = 1255
Score = 140 (54.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +T+ T S G+ N +LA++A+ KP Q + V + + +
Sbjct: 601 LANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNL 660
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + L + LG+ T GDL S KLQ+ +G TG L+ RG+ V+
Sbjct: 661 PGVGRSMESKLAS-LGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKE 719
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + ++ G R + + +L L EE+ RL + + KR+
Sbjct: 720 RKSVSAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 764
Score = 72 (30.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA- 67
+AK++CP ++ V D ++Y+ V ILA E S DE +D+T+
Sbjct: 539 QAKKLCPNLQAVSY-------DFNAYKEVAQTVYEILASYTHNIEAVSCDEALVDITEIL 591
Query: 68 AEAMLAETPPESLDEVDEE 86
E L TP E + + +E
Sbjct: 592 TETRL--TPDELANAIRDE 608
Score = 53 (23.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 615 EIDPSVIDELPKEIQDEIQ-AWLRPSKRPHR 644
++DP V LP E+Q E++ A+ + K+P +
Sbjct: 1025 QVDPEVFAALPAELQAELKDAYDQRQKQPEQ 1055
>UNIPROTKB|Q4KWZ7 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0019985
"translesion synthesis" evidence=TAS] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0002206 "gene conversion of
immunoglobulin genes" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005654 GO:GO:0000287
GO:GO:0003684 GO:GO:0006260 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03515 EMBL:AY675169 IPI:IPI00571721 RefSeq:NP_001025982.2
UniGene:Gga.24037 ProteinModelPortal:Q4KWZ7 SMR:Q4KWZ7
STRING:Q4KWZ7 GeneID:418703 KEGG:gga:418703 CTD:51455
HOGENOM:HOG000154094 HOVERGEN:HBG054140 InParanoid:Q4KWZ7
OrthoDB:EOG4GF3DF NextBio:20821851 GO:GO:0002206 Uniprot:Q4KWZ7
Length = 1255
Score = 140 (54.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +T+ T S G+ N +LA++A+ KP Q + V + + +
Sbjct: 601 LANAIRDEIKAQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNL 660
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + L + LG+ T GDL S KLQ+ +G TG L+ RG+ V+
Sbjct: 661 PGVGRSMESKLAS-LGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKE 719
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + ++ G R + + +L L EE+ RL + + KR+
Sbjct: 720 RKSVSAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 764
Score = 72 (30.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA- 67
+AK++CP ++ V D ++Y+ V ILA E S DE +D+T+
Sbjct: 539 QAKKLCPNLQAVSY-------DFNAYKEVAQTVYEILASYTHNIEAVSCDEALVDITEIL 591
Query: 68 AEAMLAETPPESLDEVDEE 86
E L TP E + + +E
Sbjct: 592 TETRL--TPDELANAIRDE 608
Score = 53 (23.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 615 EIDPSVIDELPKEIQDEIQ-AWLRPSKRPHR 644
++DP V LP E+Q E++ A+ + K+P +
Sbjct: 1025 QVDPEVFAALPAELQAELKDAYDQRQKQPEQ 1055
>ZFIN|ZDB-GENE-081105-180 [details] [associations]
symbol:si:dkey-57a22.7 "si:dkey-57a22.7"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 ZFIN:ZDB-GENE-081105-180
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03515
HOGENOM:HOG000154094 HOVERGEN:HBG054140 EMBL:CR392332 EMBL:CR536604
IPI:IPI00862463 RefSeq:NP_001116772.1 UniGene:Dr.61598 SMR:B0UY97
Ensembl:ENSDART00000134915 GeneID:570043 KEGG:dre:570043
NextBio:20889959 Uniprot:B0UY97
Length = 1268
Score = 152 (58.6 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 42/157 (26%), Positives = 77/157 (49%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R + ++T S G++ N +LA++A+ KP Q + V + P+ +
Sbjct: 629 LARSIREDIKEKTGCCASVGMSSNILLARMATRKAKPKGQYLLRSEEVDDFIRDQPVSSL 688
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + L + LGV+T GDL + S +LQ +G TG L+ RG+ V++
Sbjct: 689 PGVGRSMSSKLTS-LGVSTCGDLQQLSLSQLQREFGPRTGQTLFRFCRGLDDRPVRSEKE 747
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS + ++ R + V + +LN L E+ +RL
Sbjct: 748 RKSVSAEMNY-NIRFTQ-VEEAESFLNNLSMEVQKRL 782
Score = 57 (25.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 22/77 (28%), Positives = 33/77 (42%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 69
AK++CP ++ VP D +Y+ + ILA E S DE +D T A
Sbjct: 568 AKQLCPDLQ--SVPY-----DFHAYKEVALAMYEILASYTHNIEALSCDEALVDAT-ALL 619
Query: 70 AMLAETPPESLDEVDEE 86
L +P E + E+
Sbjct: 620 VELGVSPDELARSIRED 636
Score = 53 (23.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 615 EIDPSVIDELPKEIQDEI 632
++DP V LP+E+Q+E+
Sbjct: 1053 QVDPDVFAALPRELQEEL 1070
Score = 53 (23.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 615 EIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 659
++DPSV+ LP +I+ +++ R +R +Q T + Y +P +
Sbjct: 978 QVDPSVLKALPIDIRRQVEETWR-----YREEQPSTSSHYSTPPR 1017
>UNIPROTKB|P63987 [details] [associations]
symbol:dinB2 "DNA polymerase IV 2" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842581 GO:GO:0003887 eggNOG:COG0389
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 PIR:A70649 RefSeq:NP_217572.1 RefSeq:NP_337660.1
RefSeq:YP_006516517.1 ProteinModelPortal:P63987 SMR:P63987
EnsemblBacteria:EBMYCT00000003933 EnsemblBacteria:EBMYCT00000069414
GeneID:13317860 GeneID:887519 GeneID:923303 KEGG:mtc:MT3142
KEGG:mtu:Rv3056 KEGG:mtv:RVBD_3056 PATRIC:18128668
TubercuList:Rv3056 OMA:IIAHIDI ProtClustDB:PRK03352 Uniprot:P63987
Length = 346
Score = 157 (60.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R +L +T +CS GI+ NK AK+A+G+ KPA + ++ ++ ++ +
Sbjct: 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTVEAL 187
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL- 247
+G K L +LG+ TV L L ++G T WL +A+G EV A+
Sbjct: 188 WGVGPKTTKRLA-KLGINTVYQLAHTDSGLLMSTFGPRTALWLL-LAKGGGDTEVSAQAW 245
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+P+S +FP R L + ++ + +L + + + R+A T+
Sbjct: 246 VPRSRSHAVTFP--RDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTV 295
>UNIPROTKB|E2RPL9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 KO:K03515 CTD:51455
OMA:YRFCRGL EMBL:AAEX03007444 RefSeq:XP_538458.3
Ensembl:ENSCAFT00000003562 GeneID:481337 KEGG:cfa:481337
Uniprot:E2RPL9
Length = 1253
Score = 145 (56.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 45/163 (27%), Positives = 77/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R ++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 594 VRTEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVG 653
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L N LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 654 RSMESKL-NSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSI 712
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + + LN L EE+ RL + + KR+
Sbjct: 713 SAEINY-GIRFTQPKEAEAFLLN-LSEEIQRRLEAAHVKGKRL 753
Score = 64 (27.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA- 67
+AK++CP ++ V P D +Y+ + LA E S DE +D+T+
Sbjct: 528 QAKQLCPNLQAV--PY-----DFHAYKEVARTMYETLASYTHNIEAVSCDEALVDITEIL 580
Query: 68 AEAMLAETPPESLDEVDEE 86
AE L TP E + V E
Sbjct: 581 AETRL--TPDEFANAVRTE 597
Score = 52 (23.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 1016 QVDPEVFAALPAELQKELKA 1035
>UNIPROTKB|P63985 [details] [associations]
symbol:dinB1 "DNA polymerase IV 1" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842577 GO:GO:0003887 PIR:F70760
RefSeq:NP_216053.2 RefSeq:NP_336041.2 RefSeq:YP_006514925.1
ProteinModelPortal:P63985 SMR:P63985
EnsemblBacteria:EBMYCT00000000713 EnsemblBacteria:EBMYCT00000071148
GeneID:13320135 GeneID:886414 GeneID:924358 KEGG:mtc:MT1589
KEGG:mtu:Rv1537 KEGG:mtv:RVBD_1537 PATRIC:18125261
TubercuList:Rv1537 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
OMA:LKKADMS ProtClustDB:PRK03348 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 Uniprot:P63985
Length = 468
Score = 158 (60.7 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 49/169 (28%), Positives = 76/169 (44%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
LR +V ET S G K +AK+ASG+ KP V + + LL LP++++ +G
Sbjct: 129 LRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQALLSGLPVRRLWGIG 188
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
L + LG+ T+G L S+ + G G L +ARGI V R K
Sbjct: 189 PVAEEKL-HRLGIETIGQLAALSDAEAANILGATIGPALHRLARGIDDRPVVERAEAKQI 247
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ +F L T+ + ++ + E +RL D R A T+T+
Sbjct: 248 SAESTFAVD--LTTMEQLHEAIDSIAEHAHQRLLRD----GRGARTITV 290
>UNIPROTKB|Q74H50 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 157 (60.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 51/154 (33%), Positives = 74/154 (48%)
Query: 134 RMQVLKETEF--TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
R++ L F TCS GIA NK+LAKLAS M KP T + V L++ +PI+ + +
Sbjct: 130 RIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEIIPIQDLCGI 189
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV-QARLLPK 250
G K L N LG+ T G+L +F + L+ ++G G L + +GI V +
Sbjct: 190 GVKTRKQL-NSLGIQTCGELGRFPVEILRRTFGV-IGDRLHLMGKGIDDSPVVPVEEAEE 247
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G S R L + +L QL E + R
Sbjct: 248 VKSVGHSMTLDRDLTARRDILKYLLQLSEMVGRR 281
>TIGR_CMR|GSU_0043 [details] [associations]
symbol:GSU_0043 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 157 (60.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 51/154 (33%), Positives = 74/154 (48%)
Query: 134 RMQVLKETEF--TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
R++ L F TCS GIA NK+LAKLAS M KP T + V L++ +PI+ + +
Sbjct: 130 RIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEIIPIQDLCGI 189
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV-QARLLPK 250
G K L N LG+ T G+L +F + L+ ++G G L + +GI V +
Sbjct: 190 GVKTRKQL-NSLGIQTCGELGRFPVEILRRTFGV-IGDRLHLMGKGIDDSPVVPVEEAEE 247
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G S R L + +L QL E + R
Sbjct: 248 VKSVGHSMTLDRDLTARRDILKYLLQLSEMVGRR 281
>UNIPROTKB|E9PST4 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 RGD:620058 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 IPI:IPI00777177
Ensembl:ENSRNOT00000061462 ArrayExpress:E9PST4 Uniprot:E9PST4
Length = 771
Score = 132 (51.5 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 47/158 (29%), Positives = 75/158 (47%)
Query: 148 GIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 205
GIA N MLAK+ S NKP Q VP S+V + LPI+K+ +G K+ + LG+
Sbjct: 231 GIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIG-KVTEKMLLALGI 289
Query: 206 TTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRA 263
T +L + + S F+ +W + ++A G+ ++ AR G KS R
Sbjct: 290 VTCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL-AR-----DGERKSMSVERT 340
Query: 264 LKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ + + LC+EL L DL++ T+T+
Sbjct: 341 FSEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 377
Score = 72 (30.4 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 147 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEA 199
Query: 61 YLDLT 65
YL++T
Sbjct: 200 YLNIT 204
Score = 46 (21.3 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 396 STSEQLPDNFIDAAPLSPSGSESYSTLN 423
S E PD+ + PLSP+ +E+ STL+
Sbjct: 637 SEGEGYPDSQGKSCPLSPA-NETVSTLS 663
>UNIPROTKB|F1N787 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 GO:GO:0009411 GO:GO:0000287 GO:GO:0003684
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 OMA:YRFCRGL EMBL:DAAA02030163
EMBL:DAAA02030164 EMBL:DAAA02030165 EMBL:DAAA02030166
EMBL:DAAA02030167 EMBL:DAAA02030168 IPI:IPI00731687
Ensembl:ENSBTAT00000061518 Uniprot:F1N787
Length = 1202
Score = 144 (55.7 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+RM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 543 VRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVG 602
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 603 RSMESKLMS-LGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRPVRTEKERKSI 661
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + +L L EE+ RL + + KR+
Sbjct: 662 SAEINY-GIR-FSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRL 702
Score = 61 (26.5 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDA-A 68
AK++CP ++ V P D +Y+ + LA E S DE +D+T+ A
Sbjct: 478 AKQLCPNLQAV--PY-----DFHAYKEVAQTMYETLASYTHDIEAVSCDEALVDITEILA 530
Query: 69 EAMLAETPPESLDEVDEE 86
E L TP E + V E
Sbjct: 531 ETRL--TPDEFANAVRME 546
Score = 51 (23.0 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 965 QVDPEVFAALPVELQKELRA 984
>UNIPROTKB|D6R9M8 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC010245 EMBL:AC116341 GO:GO:0003887
InterPro:IPR024728 Pfam:PF11798 HOGENOM:HOG000082711 HGNC:HGNC:9183
EMBL:AC026424 IPI:IPI00967979 ProteinModelPortal:D6R9M8 SMR:D6R9M8
Ensembl:ENST00000514141 UCSC:uc003kea.3 ArrayExpress:D6R9M8
Bgee:D6R9M8 Uniprot:D6R9M8
Length = 427
Score = 129 (50.5 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIK 186
+V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +V + LPI+
Sbjct: 293 VVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIR 352
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDL 211
K+ +G K+ + LG+ T +L
Sbjct: 353 KVSGIG-KVTEKMLKALGIITCTEL 376
Score = 71 (30.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 148 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILADYDPNFMAMSLDEA 200
Query: 61 YLDLTDAAE 69
YL++T E
Sbjct: 201 YLNITKHLE 209
>UNIPROTKB|Q9UBZ9 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017125 "deoxycytidyl transferase
activity" evidence=IEA] [GO:0042276 "error-prone translesion
synthesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009411 "response to UV" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0005654
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 EMBL:AC018690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:3VU7 PDBsum:3VU7 GO:GO:0017125 PDB:2LSK PDBsum:2LSK KO:K03515
CTD:51455 HOGENOM:HOG000154094 HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF
EMBL:AF151538 EMBL:AF206019 EMBL:AB047646 EMBL:AF357886
EMBL:AK002087 EMBL:AJ131720 IPI:IPI00008816 IPI:IPI00552928
IPI:IPI00552936 RefSeq:NP_001032961.1 RefSeq:NP_057400.1
UniGene:Hs.443077 PDB:2EBW PDB:2LSY PDB:3GQC PDBsum:2EBW
PDBsum:2LSY PDBsum:3GQC ProteinModelPortal:Q9UBZ9 SMR:Q9UBZ9
MINT:MINT-140323 STRING:Q9UBZ9 PhosphoSite:Q9UBZ9 DMDM:59798439
PaxDb:Q9UBZ9 PRIDE:Q9UBZ9 Ensembl:ENST00000258428
Ensembl:ENST00000393445 GeneID:51455 KEGG:hsa:51455 UCSC:uc002tac.3
UCSC:uc002tad.3 UCSC:uc002tae.1 GeneCards:GC02M100016
HGNC:HGNC:14060 HPA:HPA044534 HPA:HPA051036 MIM:606134
neXtProt:NX_Q9UBZ9 PharmGKB:PA162401120 InParanoid:Q9UBZ9
OMA:YRFCRGL PhylomeDB:Q9UBZ9 ChiTaRS:REV1 EvolutionaryTrace:Q9UBZ9
GenomeRNAi:51455 NextBio:55069 ArrayExpress:Q9UBZ9 Bgee:Q9UBZ9
CleanEx:HS_REV1 Genevestigator:Q9UBZ9 GermOnline:ENSG00000135945
Uniprot:Q9UBZ9
Length = 1251
Score = 143 (55.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 44/163 (26%), Positives = 78/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+RM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 594 VRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVG 653
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 654 HSMESKLAS-LGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 712
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + + +L L EE+ RL + + KR+
Sbjct: 713 SAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEATGMKGKRL 753
Score = 62 (26.9 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDA-A 68
AK++CP ++ V P D +Y+ + LA E S DE +D+T+ A
Sbjct: 529 AKQLCPNLQAV--PY-----DFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILA 581
Query: 69 EAMLAETPPESLDEVDEE 86
E L TP E + V E
Sbjct: 582 ETKL--TPDEFANAVRME 597
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 1015 QVDPEVFAALPAELQRELKA 1034
Score = 42 (19.8 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 479 QNKPQNRDDSRMRSVPIKSNQQEHKKSALKDK 510
Q + +N + S + N H K+A+K+K
Sbjct: 1040 QRQGENSTHQQSASASVPKNPLLHLKAAVKEK 1071
>ZFIN|ZDB-GENE-060526-137 [details] [associations]
symbol:polk "polymerase (DNA directed) kappa"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 ZFIN:ZDB-GENE-060526-137 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOVERGEN:HBG101212 OrthoDB:EOG4Z8XVV
EMBL:BX294131 IPI:IPI00806343 UniGene:Dr.86433 SMR:B0S5R3
Ensembl:ENSDART00000141039 OMA:FISTEDK Uniprot:B0S5R3
Length = 875
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 84/307 (27%), Positives = 133/307 (43%)
Query: 15 CPQIELVQVPVARGKADL---SSY--RNAG--SEVVSILARKGRCERASIDEVYLDLTDA 67
CP EL P+A G + S+Y R G + + +A+K C I D A
Sbjct: 120 CP--ELKDKPMAVGSMSMLSTSNYHARRFGVRAAMPGFIAKK-LCPDLVIVPTNFDKYRA 176
Query: 68 AEAMLAET-----P---PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 119
A + E P P SLDE + + H+ + K D+ T K + AD +
Sbjct: 177 VSAQVREIFSEYDPNFMPMSLDEAYLD-ITEHLE--QRKHWPDTMRTHKICDAKTGADGK 233
Query: 120 DKLLACGVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS--V 176
++ V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P V
Sbjct: 234 AEVFGTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVV 293
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LWNI 234
+ LP++K+ +G K+ + LG+ T L + S F+ +W +I
Sbjct: 294 MDFMKDLPVRKVSGVG-KVTEKMLAALGIVTCSQL---GQQMALLSLLFSETSWHHFLHI 349
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
+ G+ ++ KS + ++F G + A Q+ LC+EL L DL++
Sbjct: 350 SLGLGSTYMERDSERKSMSTERTF-GEMS---DAGEQY---SLCKELCHDLAQDLQREGL 402
Query: 295 IAHTLTL 301
T+TL
Sbjct: 403 KGKTVTL 409
>FB|FBgn0035150 [details] [associations]
symbol:Rev1 "Rev1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0017125 "deoxycytidyl
transferase activity" evidence=ISS;NAS] [GO:0019985 "translesion
synthesis" evidence=NAS] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 EMBL:AE014296 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0010569 GO:GO:0003887 GO:GO:0019985 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GO:GO:0017125 GeneTree:ENSGT00530000062942
KO:K03515 OMA:TIPYDFD CTD:51455 FlyBase:FBgn0035150 EMBL:AB049435
RefSeq:NP_612047.1 UniGene:Dm.2203 SMR:Q9W0P2 IntAct:Q9W0P2
STRING:Q9W0P2 EnsemblMetazoa:FBtr0072557 GeneID:38079
KEGG:dme:Dmel_CG12189 UCSC:CG12189-RA InParanoid:Q9W0P2
GenomeRNAi:38079 NextBio:806885 Uniprot:Q9W0P2
Length = 995
Score = 147 (56.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 44/157 (28%), Positives = 81/157 (51%)
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS-VKGLLDSLPIKKM 188
V+ LR +V +T CSAG+A NK+LA++A+ KP Q + S+ + + + + +
Sbjct: 442 VSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDLL 501
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L+ + G+ GD+ + +K+++ G G L+ RGI + +
Sbjct: 502 PGVGSSISHKLK-QAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGIDDRPLAYEQI 560
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
K+ + +F G R +V Q +L QL EE+++RL
Sbjct: 561 RKTVSAEMNF-GIRFTNSVECEQ-FLCQLSEEVTKRL 595
Score = 56 (24.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
+A ++CP EL +P D Y+ + +A+ E S DE++++LTD A
Sbjct: 379 QALKLCP--ELKTIPY-----DFEGYKEVAFTLYDTVAQYTLNIEAVSCDEMFVELTDLA 431
Query: 69 EAM 71
+
Sbjct: 432 HEL 434
Score = 46 (21.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 586 EAATTSTSTDRCGSDQIQQRSESWK----LRIEEIDPSVIDELPKEIQDEI 632
+A ST R ++Q+R E + +R ++I ID+LP + I
Sbjct: 832 KATDLKPSTSRAAVARLQKRKERKEQEHYIRSDQIVADYIDDLPDFVNPHI 882
Score = 46 (21.3 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 546 LSESNKKQVNIPKERL-DNSTGDCLSESNQNQV--NIPKER----LAEAATTSTSTDRCG 598
+SE K + IP+ + D S GD + N+ V N PK R + T + + +
Sbjct: 695 MSEMRKDKP-IPQGAVGDKSIGD--DKVNKPLVFENKPKPREPRNVLSMLTAAAVSRKSV 751
Query: 599 SDQIQQRSESWKLR-----IEEIDPSVIDELPKEIQDEIQA 634
++ QR S + + ++D V+ +LP++I+ E+ A
Sbjct: 752 TEDRSQRGTSKPITRPLSLVPKLDEDVLAQLPEDIRLEVIA 792
>SGD|S000002827 [details] [associations]
symbol:RAD30 "DNA polymerase eta, involved in translesion
synthesis during post-rep" species:4932 "Saccharomyces cerevisiae"
[GO:0042276 "error-prone translesion synthesis" evidence=IDA;IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=IDA]
[GO:0005657 "replication fork" evidence=IPI] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SGD:S000002827 EMBL:U33007 GO:GO:0005634
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:BK006938 KO:K09043
GO:GO:0005657 GO:GO:0003887 GO:GO:0070987 GO:GO:0042276
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
RefSeq:NP_010707.3 GeneID:852028 KEGG:sce:YDR419W KO:K03509
OrthoDB:EOG4M0J8V PIR:S69702 RefSeq:NP_010711.3 PDB:1JIH PDB:2R8J
PDB:2R8K PDB:2WTF PDB:2XGP PDB:2XGQ PDB:3MFH PDB:3MFI PDB:3OHA
PDB:3OHB PDBsum:1JIH PDBsum:2R8J PDBsum:2R8K PDBsum:2WTF
PDBsum:2XGP PDBsum:2XGQ PDBsum:3MFH PDBsum:3MFI PDBsum:3OHA
PDBsum:3OHB ProteinModelPortal:Q04049 SMR:Q04049 DIP:DIP-6500N
IntAct:Q04049 MINT:MINT-708283 STRING:Q04049 PaxDb:Q04049
EnsemblFungi:YDR419W GeneID:852033 KEGG:sce:YDR423C CYGD:YDR419w
HOGENOM:HOG000065930 OMA:IPIHTAV EvolutionaryTrace:Q04049
NextBio:970255 Genevestigator:Q04049 GermOnline:YDR419W
Uniprot:Q04049
Length = 632
Score = 92 (37.4 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
D D +LA G + +R + +T S G++ K + KLAS KP QT V +
Sbjct: 232 DWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCL 291
Query: 177 KGLLD--SLPIKKMKQLGGKLGTSL 199
LD I LGG LG L
Sbjct: 292 LDFLDCGKFEITSFWTLGGVLGKEL 316
Score = 78 (32.5 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 231 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
L+ ++RG G + +R + KS S K+ G ++ ++ WL C EL+ R+ DLE
Sbjct: 374 LFKLSRGRYGLPLSSRPVVKSMMSNKNLRG-KSCNSIVDCISWLEVFCAELTSRI-QDLE 431
Query: 291 Q 291
Q
Sbjct: 432 Q 432
Score = 73 (30.8 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 22 QVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASIDEVYLDL 64
Q+ V K L YR + + I K C ERASIDEV+LDL
Sbjct: 118 QISVEDHKVSLEPYRRESRKALKIF--KSACDLVERASIDEVFLDL 161
>UNIPROTKB|E9PST3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00777918 Ensembl:ENSRNOT00000061463
ArrayExpress:E9PST3 Uniprot:E9PST3
Length = 793
Score = 126 (49.4 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 46/157 (29%), Positives = 74/157 (47%)
Query: 149 IAHNKMLAKLASGMNKP-AQQTTVPF-SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVT 206
IA N MLAK+ S NKP Q VP S+V + LPI+K+ +G K+ + LG+
Sbjct: 254 IAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIG-KVTEKMLLALGIV 312
Query: 207 TVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRAL 264
T +L + + S F+ +W + ++A G+ ++ AR G KS R
Sbjct: 313 TCTELY---QQRALLSLLFSESSWHYFLHVALGLGSTDL-AR-----DGERKSMSVERTF 363
Query: 265 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ + + LC+EL L DL++ T+T+
Sbjct: 364 SEINKTEEQYS-LCQELCTELAHDLQKEGLKGRTVTI 399
Score = 72 (30.4 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V ++M G AK +CPQ L+ VP + YR EV ILA A S+DE
Sbjct: 147 VRAAMPGFIAKRLCPQ--LIIVP-----PNFDKYRAVSKEVKEILAEYDPNFMAMSLDEA 199
Query: 61 YLDLT 65
YL++T
Sbjct: 200 YLNIT 204
Score = 46 (21.3 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 396 STSEQLPDNFIDAAPLSPSGSESYSTLN 423
S E PD+ + PLSP+ +E+ STL+
Sbjct: 659 SEGEGYPDSQGKSCPLSPA-NETVSTLS 685
>RGD|1306715 [details] [associations]
symbol:Rev1 "REV1, polymerase (DNA directed)" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA;ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=IEA;ISO] [GO:0042276
"error-prone translesion synthesis" evidence=IEA;ISO]
InterPro:IPR001126 InterPro:IPR012112 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 InterPro:IPR001357 Pfam:PF00533 RGD:1306715
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH473965 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03515 CTD:51455 OrthoDB:EOG4GF3DF IPI:IPI00951348
RefSeq:NP_001101683.1 UniGene:Rn.94641 Ensembl:ENSRNOT00000067197
GeneID:316344 KEGG:rno:316344 UCSC:RGD:1306715 NextBio:670745
Uniprot:D3ZRU9
Length = 1119
Score = 138 (53.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
LRM++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 592 LRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPGVG 651
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 652 RSMESKLAS-LGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 710
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + + +L L E+ RL + + KR+
Sbjct: 711 SAEINY-GIRFTQP-REAEAFLLSLSGEIQSRLEAAGMKGKRL 751
Score = 54 (24.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAAE 69
AK++CP ++ V P D + R + LA E S DE +D+TD
Sbjct: 527 AKQLCPNLQAV--PY-----DFHACREVAQALYETLASYTHSIEAVSCDEALIDVTD--- 576
Query: 70 AMLAET 75
+LAET
Sbjct: 577 -ILAET 581
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 1014 QVDPDVFAALPAELQKELKA 1033
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 615 EIDPSVIDELPKEIQDEI-QAWLRPSKRPHRVKQ 647
+ID SV++ LP +I++++ QA+ P K+
Sbjct: 935 QIDQSVLEALPPDIREQVEQAYAAQQGEPRGSKK 968
>MGI|MGI:1929074 [details] [associations]
symbol:Rev1 "REV1 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017125
"deoxycytidyl transferase activity" evidence=IDA] [GO:0042276
"error-prone translesion synthesis" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 MGI:MGI:1929074 Pfam:PF00533 GO:GO:0005634
GO:GO:0009411 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:4FJO PDBsum:4FJO GO:GO:0017125 GeneTree:ENSGT00530000062942
PDB:2LSJ PDBsum:2LSJ KO:K03515 CTD:51455 HOGENOM:HOG000154094
HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF OMA:YRFCRGL ChiTaRS:REV1
EMBL:AB057418 EMBL:AF179302 EMBL:BC058093 IPI:IPI00396706
RefSeq:NP_062516.2 UniGene:Mm.389103 PDB:2LSG PDBsum:2LSG
ProteinModelPortal:Q920Q2 SMR:Q920Q2 DIP:DIP-41772N IntAct:Q920Q2
STRING:Q920Q2 PhosphoSite:Q920Q2 PRIDE:Q920Q2
Ensembl:ENSMUST00000027251 GeneID:56210 KEGG:mmu:56210
UCSC:uc007asp.1 InParanoid:Q920Q2 NextBio:312050 Bgee:Q920Q2
CleanEx:MM_REV1 Genevestigator:Q920Q2 GermOnline:ENSMUSG00000026082
Uniprot:Q920Q2
Length = 1249
Score = 139 (54.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 44/163 (26%), Positives = 78/163 (47%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
LR+++ +T+ S GI N +LA++A+ KP Q + V + + + +G
Sbjct: 592 LRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTNLPGVG 651
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ + L + LG+ T GDL + KLQ+ +G TG L+ RG+ V+ KS
Sbjct: 652 RSMESKLAS-LGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSV 710
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ ++ G R + + +L L EE+ RL + + KR+
Sbjct: 711 SAEINY-GIRFTQP-KEAEAFLLSLSEEIQRRLEAAGMKGKRL 751
Score = 54 (24.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAAE 69
AK++CP ++ V P D + R + LA E S DE +D+TD
Sbjct: 527 AKQLCPNLQAV--PY-----DFHACREVAQAMYETLASYTHSIEAVSCDEALIDVTD--- 576
Query: 70 AMLAET 75
+LAET
Sbjct: 577 -ILAET 581
Score = 52 (23.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 615 EIDPSVIDELPKEIQDEIQA 634
++DP V LP E+Q E++A
Sbjct: 1015 QVDPDVFAALPAELQKELKA 1034
Score = 46 (21.3 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 615 EIDPSVIDELPKEIQDEIQ 633
+ID SV++ LP +++++I+
Sbjct: 937 QIDQSVLEALPLDLREQIE 955
>UNIPROTKB|Q0BZW2 [details] [associations]
symbol:dinB "DNA polymerase IV" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006261 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:YP_760981.1 ProteinModelPortal:Q0BZW2
STRING:Q0BZW2 GeneID:4289730 KEGG:hne:HNE_2286 PATRIC:32217415
OMA:PALCRDC ProtClustDB:PRK02794
BioCyc:HNEP228405:GI69-2308-MONOMER Uniprot:Q0BZW2
Length = 424
Score = 128 (50.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 40/129 (31%), Positives = 56/129 (43%)
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
+ L V +E T S G++ NK LAK AS ++KP + + L P+ +
Sbjct: 156 LARLAKNVEREVGVTVSVGLSSNKFLAKTASELDKPRGFAIIAPEEAEAFLAPHPVGFLH 215
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
+G K SL N+ G T+ D+ K L YG TG WL A G +V
Sbjct: 216 GVGPKFAESL-NKDGFYTIEDIQKADLKSLIRRYG-ETGDWLKRCAHGRDNRKVNPHEDR 273
Query: 250 KSHGSGKSF 258
KS S +F
Sbjct: 274 KSVSSETTF 282
Score = 57 (25.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A + CP + V VP D YR A + + + ++ SIDE
Sbjct: 85 VRSAMPMFKALKACP--DAVVVP-----PDFRKYREAAKAIRAEMDHLTPLVQQVSIDEA 137
Query: 61 YLDLTDAAEAMLAETPPESL 80
YLDL+ + + P SL
Sbjct: 138 YLDLS-GTDRLHGAPPAASL 156
>ASPGD|ASPL0000039840 [details] [associations]
symbol:AN3373 species:162425 "Emericella nidulans"
[GO:0000077 "DNA damage checkpoint" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:BN001306 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:VHVDCDA EnsemblFungi:CADANIAT00009669
HOGENOM:HOG000082709 Uniprot:C8VHQ1
Length = 612
Score = 141 (54.7 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 54/227 (23%), Positives = 102/227 (44%)
Query: 77 PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQ 136
P++ ++ +A + + L D A++ E A R+K L V+ +R +
Sbjct: 179 PQNYEKYTAKAQEIRAI-LAQYDPQFESASIDEAYLNITAYCREKQLDPDEA-VSRMRAE 236
Query: 137 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGK 194
+L++T+ + SAGIA N +AK+ S NKP Q VP +++ + LP++K+ +G
Sbjct: 237 ILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEKNAIMEFMRDLPMRKINGVGRV 296
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 254
L + +G+ T GD+ L + +G +L G+ ++Q P
Sbjct: 297 FERELDS-IGIKTCGDIFP-QRAYLAKLFGEKALHFLAQCYLGVGRTKIQ----PAESYE 350
Query: 255 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS R ++ + + +L ++ L DL + + + TL L
Sbjct: 351 RKSVGTERTFHEISKREEFREKLWS-CAQELEKDLSRTQFMGRTLVL 396
>ASPGD|ASPL0000030996 [details] [associations]
symbol:AN5620 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00278 GO:GO:0003684 GO:GO:0006281
EMBL:AACD01000098 EMBL:BN001305 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 KO:K03510 RefSeq:XP_663224.1
EnsemblFungi:CADANIAT00003450 GeneID:2871907 KEGG:ani:AN5620.2
HOGENOM:HOG000191154 OMA:EAKQICP OrthoDB:EOG41CB4X Uniprot:Q5B1G0
Length = 573
Score = 134 (52.2 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 59/210 (28%), Positives = 93/210 (44%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--G-RCERASIDEVYLDLTD 66
EAK++CP + ++ G+ DL+ +R+A ++ R G R ER DE+++D+TD
Sbjct: 66 EAKQICPDVVIIL-----GE-DLTKFRDASKDLYLFFRRSIWGERVERLGFDEIFMDVTD 119
Query: 67 AAEAMLAETPPESLDE----VDE-EALKSHILGLESKDGND--SKATVKEWLCRCDAD-H 118
P L +D + + G + + K L D H
Sbjct: 120 MITYNAGLLNPNDLTHSFFHLDSRDPTVGFAFDATAVYGRTYPNDRSGKP-LSEADTQLH 178
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV--PFSS- 175
LLA LR Q+ + +T +AGI+ +K+LAK+ +KP QTT+ P+SS
Sbjct: 179 LRLLLASH--FAGYLRSQLENQKGYTATAGISTSKLLAKVVGSAHKPNNQTTLLPPYSST 236
Query: 176 ------VKGLLDSLPIKKMKQLGGKLGTSL 199
V LDS I+ + +G KL L
Sbjct: 237 GDCESNVLRFLDSREIRAIPGIGSKLSRKL 266
Score = 50 (22.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 228 GTWLWNIARGISGEEV-QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
G +W + G+ G +V +AR P S+ G L T +V+ + L L R+
Sbjct: 312 GVKIWGLLHGVDGTQVGEARDTPTQISIENSY-GH--LDTFEAVRKEMLSLAASLIRRMR 368
Query: 287 SDLEQ 291
DL +
Sbjct: 369 MDLTE 373
>TIGR_CMR|SPO_3280 [details] [associations]
symbol:SPO_3280 "DNA polymerase IV, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:PALCRDC ProtClustDB:PRK02794
RefSeq:YP_168477.1 ProteinModelPortal:Q5LND1 GeneID:3193147
KEGG:sil:SPO3280 PATRIC:23380003 Uniprot:Q5LND1
Length = 420
Score = 136 (52.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/157 (26%), Positives = 75/157 (47%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+++ L ++ E T S G++HNK LAK+AS + KP + + + L P++
Sbjct: 156 VMLARLVKRMKDELGVTGSIGLSHNKFLAKVASDLEKPRGFSVIGRAETAEFLRDKPVRL 215
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G SL+ G+ T DLL++ ++ L +G G LW++ARG V A
Sbjct: 216 IWGIGPAAQESLERA-GIRTFTDLLRWEQEALVARFGA-MGQRLWHLARGEDRRRVSAHD 273
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
KS + +F V W ++ E++++R
Sbjct: 274 PIKSISNETTFFEDTGDADVLDGHIW--RMAEKVADR 308
Score = 43 (20.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S+M +A ++CP+ ++ K +S Y ++ +++ E S+DE
Sbjct: 87 VRSAMPMFQALKLCPEAVVI-------KPRMSVYAEVSKQIRALMDELTPVVEPLSLDEA 139
Query: 61 YLDLT 65
++DL+
Sbjct: 140 FMDLS 144
>UNIPROTKB|J3QR36 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000577612 Uniprot:J3QR36
Length = 195
Score = 91 (37.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 65 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 118
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLES 97
E L + +S DE+ + H+ +S
Sbjct: 119 EKRLQQL--QS-DELSAVTVSGHVYNNQS 144
Score = 74 (31.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
L G I E+R + + T AG+A NK+LAKL SG+
Sbjct: 155 LLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGV 194
>UNIPROTKB|Q81NC2 [details] [associations]
symbol:BAS3053 "ImpB/mucB/samB family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 124 (48.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 40/172 (23%), Positives = 81/172 (47%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL----PIKK 187
+ + ++ + T C+ GIA N +++K+A + + V + + + + L P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ K T L N+ G+ ++GDL + L++S+G G L + GI + +
Sbjct: 197 FWGISHKTETKL-NQKGIHSIGDLANYPLKYLKQSFGV-IGEELHLHSNGIDFSRISEKY 254
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+P + GKS + L +++ + L E +E +C L Q ++A T+
Sbjct: 255 VPVTTSIGKS----QILMRDYTIEEFPIILLEH-TEEVCYRLRQQNKLAQTV 301
Score = 49 (22.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 56 SIDEVYLDLTDAAEAMLAETPPE 78
SIDE ++D+TD+ + A P E
Sbjct: 112 SIDEFFMDITDSIH-LFARNPNE 133
>TIGR_CMR|BA_3288 [details] [associations]
symbol:BA_3288 "impB/mucB/samB family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 124 (48.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 40/172 (23%), Positives = 81/172 (47%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL----PIKK 187
+ + ++ + T C+ GIA N +++K+A + + V + + + + L P+ K
Sbjct: 137 QFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIPTKLWSIRPLSK 196
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ K T L N+ G+ ++GDL + L++S+G G L + GI + +
Sbjct: 197 FWGISHKTETKL-NQKGIHSIGDLANYPLKYLKQSFGV-IGEELHLHSNGIDFSRISEKY 254
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+P + GKS + L +++ + L E +E +C L Q ++A T+
Sbjct: 255 VPVTTSIGKS----QILMRDYTIEEFPIILLEH-TEEVCYRLRQQNKLAQTV 301
Score = 49 (22.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 56 SIDEVYLDLTDAAEAMLAETPPE 78
SIDE ++D+TD+ + A P E
Sbjct: 112 SIDEFFMDITDSIH-LFARNPNE 133
>UNIPROTKB|Q3ZAI3 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HSSP:P96022 RefSeq:YP_180766.1
ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3 GeneID:3229123
KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL ProtClustDB:CLSK836830
BioCyc:DETH243164:GJNF-11-MONOMER Uniprot:Q3ZAI3
Length = 390
Score = 121 (47.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 45/170 (26%), Positives = 73/170 (42%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
++R ++ E S GIA++K++AK+A+ KP Q VP L L I M +
Sbjct: 127 KIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGI 186
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L++ LG+ T+G L L+ G +L N A GI V+ +P
Sbjct: 187 GKKTEYHLKS-LGINTLGRLAGIPATFLKIHLG-TYAPYLLNAAAGIDNRPVE---MP-- 239
Query: 252 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS +T +L LSE++ + L + + A + +
Sbjct: 240 -AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQI 288
Score = 48 (22.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 65
AK +CPQ ++ G L YR + + IL+ E +DE YL++T
Sbjct: 64 AKHLCPQAVFIE-----GNHRL--YREYSEKFMQILSDFSPFLEPMGLDEAYLEVT 112
>TIGR_CMR|DET_0011 [details] [associations]
symbol:DET_0011 "DNA polymerase IV, putative"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
RefSeq:YP_180766.1 ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3
GeneID:3229123 KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL
ProtClustDB:CLSK836830 BioCyc:DETH243164:GJNF-11-MONOMER
Uniprot:Q3ZAI3
Length = 390
Score = 121 (47.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 45/170 (26%), Positives = 73/170 (42%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
++R ++ E S GIA++K++AK+A+ KP Q VP L L I M +
Sbjct: 127 KIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGI 186
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L++ LG+ T+G L L+ G +L N A GI V+ +P
Sbjct: 187 GKKTEYHLKS-LGINTLGRLAGIPATFLKIHLG-TYAPYLLNAAAGIDNRPVE---MP-- 239
Query: 252 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS +T +L LSE++ + L + + A + +
Sbjct: 240 -AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQI 288
Score = 48 (22.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLT 65
AK +CPQ ++ G L YR + + IL+ E +DE YL++T
Sbjct: 64 AKHLCPQAVFIE-----GNHRL--YREYSEKFMQILSDFSPFLEPMGLDEAYLEVT 112
>WB|WBGene00017696 [details] [associations]
symbol:polk-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0003887 EMBL:FO080222 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 EMBL:FO080380 GeneTree:ENSGT00530000062942
PIR:S44637 RefSeq:NP_001122692.1 RefSeq:NP_001122693.1
UniGene:Cel.10581 ProteinModelPortal:P34409 SMR:P34409
STRING:P34409 EnsemblMetazoa:F22B7.6a GeneID:176209
KEGG:cel:CELE_F22B7.6 UCSC:F22B7.6b.2 CTD:176209 WormBase:F22B7.6a
WormBase:F22B7.6b HOGENOM:HOG000082711 InParanoid:P34409 KO:K03511
OMA:FMLAKIC NextBio:891590 Uniprot:P34409
Length = 596
Score = 134 (52.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 51/173 (29%), Positives = 83/173 (47%)
Query: 56 SIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILG------LESKDGNDSKAT--- 106
S+DE ++DLTD + +++ K H G L D N++
Sbjct: 178 SLDEAFIDLTDYVAS-----------NTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLK 226
Query: 107 VKEWLC-RCDADHR---DKL-LACG-VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
++E +C +C+ + D + G V E+R +V + T TCSAGIA N MLAK+ S
Sbjct: 227 IEESICPKCEKSRKIYYDHVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICS 286
Query: 161 GMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
+NKP Q + +++ L LPI+K+ +G L+ + + TVGD+
Sbjct: 287 DLNKPNGQYVLENDKNAIMEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDM 338
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 538 TLLPLGDCLSESNKKQVNIPKERLDNSTGD--CLSESNQNQVNIPKERLAEAAT----TS 591
T L L SES+ ++ +I ER + T D L E +Q + +E + ++ T
Sbjct: 360 TALGLPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTV 419
Query: 592 TSTDRCGSDQIQQRS--ESWKLR-IEEIDPSVIDELPKEIQDEIQAW-LRPSK---RPHR 644
T + S + RS S ++ +E+I ++ L KE EI+ +R S+
Sbjct: 420 TLKLKLSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDE 479
Query: 645 VKQGFTIADYFSPSK 659
K+ TI ++++ K
Sbjct: 480 KKRSKTITEFWNEKK 494
>CGD|CAL0001748 [details] [associations]
symbol:orf19.4412 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 CGD:CAL0001748
Pfam:PF00533 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
EMBL:AACQ01000179 EMBL:AACQ01000178 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03515 RefSeq:XP_711860.1 RefSeq:XP_723600.1
ProteinModelPortal:Q59Q77 STRING:Q59Q77 GeneID:3646519
GeneID:3646539 KEGG:cal:CaO19.11890 KEGG:cal:CaO19.4412
Uniprot:Q59Q77
Length = 1113
Score = 135 (52.6 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 51/168 (30%), Positives = 80/168 (47%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ T +R V K T S G + N +LAKLA KP Q + F ++ L+S+ IK +
Sbjct: 518 LATRIRKDVFKLTNCPVSVGASTNVLLAKLALRKAKPNGQFYL-FDDIEKFLESIYIKDL 576
Query: 189 KQLGGKLGTSLQNELGVTT--VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ-- 244
G + L +E+ + + D++ S+ +L + G TGT L+ ARG+ ++
Sbjct: 577 PGFGRGILEKLNSEIQSSNPQIKDVVTISKQRLVQLLGEKTGTKLFEYARGMDETSIEID 636
Query: 245 -----ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
A L KS +F G R TV + +L +L EL +RL S
Sbjct: 637 TNNPEAVLGRKSVSVDVNF-GIR-FDTVEELDDFLMRLSRELYQRLVS 682
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 569 LSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEI 628
++ES Q + + P++ +E ++ T + + + + S+S+ D SV++ELP I
Sbjct: 890 VTESPQRRKS-PRKSRSETSSPIKVTKQ---EPVYEESQSY-------DTSVLNELPSSI 938
Query: 629 QDEI 632
++ +
Sbjct: 939 KESV 942
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCER---ASIDEVYLDLTD 66
+A ++CP +L+ +P + SY SE + L + SIDEV +D T
Sbjct: 450 QATKLCP--DLILLPY-----EFESYEKFSSEFYNYLLTSKFFDSIFPVSIDEVLVDATS 502
Query: 67 AAEAMLAET 75
+ ++++
Sbjct: 503 YCHSGVSDS 511
Score = 41 (19.5 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 19/101 (18%), Positives = 44/101 (43%)
Query: 538 TLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTST-STDR 596
T+ L D + KQ+ +P ++ +++ +++ K+ ++ S S ++
Sbjct: 757 TISKLVDAEGVKSNKQMRLPFKKAESNALSVRDLKQLQKMSDSKDNKSQKLIFSKQSPEK 816
Query: 597 CGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLR 637
+++ E + +D V LP EI+ E++ LR
Sbjct: 817 RHVNKVLISHEFADFK--SLDWEVFHVLPDEIKSELKVELR 855
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 541 PLGDCLSESNKKQV 554
PL DC S+ K QV
Sbjct: 1094 PLVDCYSKEKKIQV 1107
Score = 37 (18.1 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 73 AETPPESLDEVDEEALKSHILGLESKDGNDSK 104
+E P L +D+E+ +HI L + ++
Sbjct: 10 SEEYPSFLRSLDDESFITHIQDLNKQHSQKNR 41
>DICTYBASE|DDB_G0287149 [details] [associations]
symbol:DDB_G0287149 "UMUC-like DNA-repair protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 dictyBase:DDB_G0287149
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
EMBL:AAFI02000098 KO:K03511 RefSeq:XP_637357.1
ProteinModelPortal:Q54KS3 EnsemblProtists:DDB0304434 GeneID:8625979
KEGG:ddi:DDB_G0287149 InParanoid:Q54KS3 OMA:YANVEEM Uniprot:Q54KS3
Length = 517
Score = 108 (43.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/88 (27%), Positives = 50/88 (56%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
G+ + +L+ + ++T TCS GI+ + +L+K++S +NKP + + + ++ I
Sbjct: 196 GIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYLDKQYSQEFIKTIQI 255
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLK 213
KK+ +G K+ L LG+ V D+++
Sbjct: 256 KKLPGIG-KVRQELLKTLGLEFVSDIIE 282
Score = 63 (27.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 35/177 (19%), Positives = 74/177 (41%)
Query: 484 NRDDSRMRSVPIKSNQQEHKKSALKDKGASSIL-NFFKSGDLSCSSGNHDTEHAETLLPL 542
N+ R+ +++++ K +K ++ + F D + N + ++A TL+
Sbjct: 310 NKSSFRINKKKTMISKEKNCKELYDEKDLEDLMKSLF---DKAIEMLNIENKYATTLIVK 366
Query: 543 GDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQI 602
+ + + K +N + + +T S S+ Q+N ++ +TST+ D I
Sbjct: 367 ---VQDFSFKVINYSYQLISTTTTSS-SSSSSLQIN----SISTIPIITTSTNNNNDDDI 418
Query: 603 QQRSESWKLRIEEIDPSVIDELPKE--IQDEIQAWLRPSKR-PHRVKQGFTIADYFS 656
+ + EEID +D P I + SK+ P ++K+ F + F+
Sbjct: 419 STEEKECITKEEEIDSYYLDSPPSSPSISSSSSSSSSSSKQSPCKLKKTFIYPNNFN 475
>UNIPROTKB|J3KQ09 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KQ09 Ensembl:ENST00000406285
Uniprot:J3KQ09
Length = 661
Score = 89 (36.4 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAA 68
+AKE CPQ+ LV G+ DL+ YR +V +L ER DE ++DLT+
Sbjct: 108 DAKEKCPQLVLVN-----GE-DLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMV 161
Query: 69 EAMLAETPPESLDEV 83
E L + + L V
Sbjct: 162 EKRLQQLQSDELSAV 176
Score = 67 (28.6 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 27/111 (24%), Positives = 46/111 (41%)
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 250
+G K L+ LG+ +V DL FS L++ G + + ++ G V P+
Sbjct: 188 IGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQ 246
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
S SF + + ++ + +L L R+C D R HT+ L
Sbjct: 247 SFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVCQD----GRKPHTVRL 290
Score = 59 (25.8 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 539 LLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 598
L+P S S K + +++ D E+N++ +P R+ T + D
Sbjct: 374 LMPSLSTTSRSGKHSFKMKDTHMEDFPKD--KETNRDF--LPSGRIESTRTRESPLDTTN 429
Query: 599 SDQIQQRSESWKLRIEE-IDPSVIDELPKEIQDEI 632
+ + +E + E +D V +LP +IQ+EI
Sbjct: 430 FSKEKDINEFPLCSLPEGVDQEVFKQLPVDIQEEI 464
Score = 58 (25.5 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 615 EIDPSVIDELPKEIQDEIQA-WLRPSKRPH 643
+IDP V ELP+ +Q E+ A W R H
Sbjct: 628 DIDPQVFYELPEAVQKELLAEWKRAGSDFH 657
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 661 628 0.00091 120 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 624 (66 KB)
Total size of DFA: 345 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.80u 0.15s 58.95t Elapsed: 00:00:03
Total cpu time: 58.83u 0.15s 58.98t Elapsed: 00:00:03
Start: Sat May 11 12:31:00 2013 End: Sat May 11 12:31:03 2013