BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006108
(661 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/718 (58%), Positives = 495/718 (68%), Gaps = 66/718 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADHRDK
Sbjct: 124 LDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADHRDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL
Sbjct: 183 LLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLG 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGE
Sbjct: 243 SLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTL
Sbjct: 303 EVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A+KS+DSDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SG
Sbjct: 363 HARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSG 422
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSESYS 420
W ITALSVSASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS SGSESY
Sbjct: 423 WSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYL 482
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTESSSSLD 478
LN E Q + PGE+ I + M +L Q E K W G K+ + T S S +
Sbjct: 483 GLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQE 542
Query: 479 QNKPQNRDDSRMRS------------------VPIKSNQQEHKKSALKDKGASSILNFFK 520
Q +P D+++ S +P + E + +A +D A+ + +K
Sbjct: 543 QVEPIQ--DTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYK 600
Query: 521 SGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKE----------RLDNSTG---- 566
D+ CS + + + S + QV +PKE R D+S
Sbjct: 601 IDDIDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRND 657
Query: 567 -------DC----------------LSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQ 603
DC S NQV +PKE + AA T + RC
Sbjct: 658 GYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGGA 715
Query: 604 QRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 661
+R E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 716 ERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 773
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/724 (58%), Positives = 495/724 (68%), Gaps = 72/724 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADHRDK
Sbjct: 124 LDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADHRDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL
Sbjct: 183 LLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLG 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGE
Sbjct: 243 SLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTL
Sbjct: 303 EVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A+KS+DSDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SG
Sbjct: 363 HARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSG 422
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSP------S 414
W ITALSVSASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS S
Sbjct: 423 WSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSDWGVYS 482
Query: 415 GSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTE 472
GSESY LN E Q + PGE+ I + M +L Q E K W G K+ + T
Sbjct: 483 GSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTS 542
Query: 473 SSSSLDQNKPQNRDDSRMRS------------------VPIKSNQQEHKKSALKDKGASS 514
S S +Q +P D+++ S +P + E + +A +D A+
Sbjct: 543 SLSEQEQVEPIQ--DTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAK 600
Query: 515 ILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKE----------RLDNS 564
+ +K D+ CS + + + S + QV +PKE R D+S
Sbjct: 601 RNDGYKIDDIDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSS 657
Query: 565 TG-----------DC----------------LSESNQNQVNIPKERLAEAATTSTSTDRC 597
DC S NQV +PKE + AA T + RC
Sbjct: 658 AAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRC 715
Query: 598 GSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSP 657
+R E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP
Sbjct: 716 SLGGGAERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSP 775
Query: 658 SKNR 661
KN+
Sbjct: 776 MKNK 779
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/676 (58%), Positives = 466/676 (68%), Gaps = 52/676 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAKE CPQI+LVQVPVARGKADL+SYRNAGSEVVS+L++KGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLT AAE ML ETP +S+ + ++E LKSH+LGLE KDG+D+K V++WLCR DA ++DK
Sbjct: 124 LDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV +LRM+VLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL
Sbjct: 184 LLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLA 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMK LGGKLG+SLQ++LGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHGSGK+FPGP+ALKTV SVQHWLNQLCEEL+ERL SDL+QNKRIA TLTL
Sbjct: 304 EVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A+K+ DSDS +KFPSKSCPLRYGT KIQED LFQAGLR+FLG + K G+ +
Sbjct: 364 HARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNN 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYS 420
W +T+LSVSASK+V + SGT SI+KYF G STS Q D ID AAP SPSGS + S
Sbjct: 424 WGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCS 483
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLD-- 478
L E + E P E ++ S A L Q DP C +S + G SSL
Sbjct: 484 GLVPNEFELEYP-EDTGMKDSKACLDQ----------QDPLCHLSCKADGLTEESSLVSP 532
Query: 479 --------QNKPQN----RDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSC 526
N+P D R+ ++ + K + K +G SI++FF + S
Sbjct: 533 SGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQ 592
Query: 527 SSGNHDTEHAETLLPLGDCLSESNKK-QVNIPKERLDNSTGDCLSESNQNQVNIPKERLA 585
SS L + N K ++ DNS C+ QV +P E
Sbjct: 593 SS-----------------LEQKNVKISSSLGSHSADNSHSTCI------QVEMPAEHPH 629
Query: 586 EAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRV 645
E T+ S RC + Q + W I EIDPS+I+ELP EIQ E Q WLRP KRP+
Sbjct: 630 EEFDTNKS--RCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVA 687
Query: 646 KQGFTIADYFSPSKNR 661
K+G +I YFSP K+R
Sbjct: 688 KRGSSITHYFSPDKSR 703
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/661 (55%), Positives = 450/661 (68%), Gaps = 60/661 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCPQI+LVQVPVARGKADL+ YR AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAVCPQIQLVQVPVARGKADLNLYRGAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K V++W+CR DAD R+K
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMSREDGDDFKENVRDWICRKDADRREK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+S+V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LG+ TVGDLL++SE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTL
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIASTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HASAFKS DS+S KKFPSKSCPLRYG KIQED FNLFQA RE++G FG K +G+
Sbjct: 364 HASAFKSRDSNSHKKFPSKSCPLRYGVTKIQEDAFNLFQAAFREYMGPFGSKPRGNKQET 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYST 421
WRIT LS+SASKIV + SGT SIM+YF S S + D ++PS SE S
Sbjct: 424 WRITGLSISASKIVDIPSGTSSIMRYFQSESTVPSRS--VDGCVQDHVTITPSASEGCSE 481
Query: 422 LNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNK 481
STE Q +P E+ + +++ + N G+DP + + ++ +
Sbjct: 482 QRSTETQAAMPEEETGVTYTLHNF------ENPDKGIDPVSEKDVVSCPSNEATDVSTQS 535
Query: 482 PQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLP 541
N+ R +N +E K+ G SI++ FK+ + + S E +
Sbjct: 536 ESNKGTQTKRIGRKMNNSKE------KNWGMPSIVDIFKNYNATPPSKQETQEDS----- 584
Query: 542 LGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQ 601
+S ++KK + NS S+ +QVN E
Sbjct: 585 ---TVSSTSKKA------KFSNS-------SHNSQVNQEVE------------------- 609
Query: 602 IQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFS 656
++R + W + +EID SV DELP EIQ E++++LRP+K+ + K G T IA YF
Sbjct: 610 -ERREKDWGYKTDEIDQSVFDELPVEIQRELRSFLRPNKQFNAGKSKGDGSTSSIAHYFP 668
Query: 657 P 657
P
Sbjct: 669 P 669
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/662 (55%), Positives = 447/662 (67%), Gaps = 62/662 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDK
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTL
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 364 HASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLET 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYS 420
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE S
Sbjct: 424 WRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCS 480
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQN 480
STE Q +P + +++ + + + + D S + T+ S+ + N
Sbjct: 481 EQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESN 538
Query: 481 KPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLL 540
K ++ + + K N + K++G SI++ FK+ + + S E
Sbjct: 539 K-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE------ 582
Query: 541 PLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSD 600
D S K+ + S S+ +QVN E
Sbjct: 583 ---DSTVSSASKRAKLS------------SSSHNSQVNQEVE------------------ 609
Query: 601 QIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYF 655
+ R W + +EID SV DELP EIQ E++++LR +K+ + K G T IA YF
Sbjct: 610 --ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYF 667
Query: 656 SP 657
P
Sbjct: 668 PP 669
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/662 (55%), Positives = 445/662 (67%), Gaps = 62/662 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDK
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETE TCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETELTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTL
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GS G+K QG+
Sbjct: 364 HASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSVGIKPQGNKLET 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYS 420
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE S
Sbjct: 424 WRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCS 480
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQN 480
STE Q +P + +++ + + + + D S + T+ S+ + N
Sbjct: 481 EQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESN 538
Query: 481 KPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLL 540
K ++ + + K N + K++G SI++ FK+ + + S E
Sbjct: 539 K-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE------ 582
Query: 541 PLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSD 600
D S K+ + S S+ +QVN E
Sbjct: 583 ---DSTVSSASKRAKLS------------SSSHNSQVNQEVE------------------ 609
Query: 601 QIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYF 655
+ R W + +EID SV DELP EIQ E++++LR +K+ + K G T IA YF
Sbjct: 610 --ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYF 667
Query: 656 SP 657
P
Sbjct: 668 PP 669
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/679 (54%), Positives = 447/679 (65%), Gaps = 79/679 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEV------------VSILARK 49
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEV VSILA+
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVDGSGSYYYTVCVVSILAKS 123
Query: 50 GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE 109
G+CERASIDEVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+
Sbjct: 124 GKCERASIDEVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRN 183
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
W+CR DAD RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT
Sbjct: 184 WICREDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 243
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
VP+++V+ LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGT
Sbjct: 244 VVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGT 303
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WLWNIARGISGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDL
Sbjct: 304 WLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDL 363
Query: 290 EQNKRIAHTLTLHASAFK-----SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 344
EQNKRIA TLTLHASAF+ S DSDS KKFPSKSCP+RYG KIQED FNLFQA LR
Sbjct: 364 EQNKRIASTLTLHASAFRVPTSLSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALR 423
Query: 345 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDN 404
E++GSFG+K QG+ WRIT LSVSASKIV + SGT SIM+YF S S D
Sbjct: 424 EYMGSFGIKPQGNKLETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADG 480
Query: 405 FIDA-APLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCS 463
+ ++ S SE S STE Q +P + +++ + + + + D
Sbjct: 481 CVQGNVAMTASASEGCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSC 540
Query: 464 ISKQTSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGD 523
S + T+ S+ + NK ++ + + K N + K++G SI++ FK+ +
Sbjct: 541 PSNE--ATDVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFKNYN 588
Query: 524 LSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIPKER 583
+ S E D S K+ + S S+ +QVN E
Sbjct: 589 ATPPSKQETQE---------DSTVSSASKRAKLS------------SSSHNSQVNQEVE- 626
Query: 584 LAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPH 643
+ R W + +EID SV DELP EIQ E++++LR +K+ +
Sbjct: 627 -------------------ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFN 667
Query: 644 RVK---QGFT--IADYFSP 657
K G T IA YF P
Sbjct: 668 TGKSKGDGSTSSIAHYFPP 686
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/458 (72%), Positives = 379/458 (82%), Gaps = 4/458 (0%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAKE CPQI+LVQVPVARGKA+L++YRNAGSEVVSIL+RKGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKEACPQIQLVQVPVARGKANLNTYRNAGSEVVSILSRKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML ETPPE ++ V+EE LKSH+LGL+ KDG+D+K V++W+CR DA +++K
Sbjct: 124 LDLTDAAQTMLMETPPECVEHVEEEVLKSHVLGLQIKDGDDAKEEVRKWICRSDASYQEK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG IV ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL+
Sbjct: 184 LLACGAFIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEGLLE 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
S PIKKMKQLGGKLGTSLQ++LG+ TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGE
Sbjct: 244 SFPIKKMKQLGGKLGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHGSGK+FPGP+ALKT+ASVQHWLN+L EELSERL SD++QNKRIAHTLTL
Sbjct: 304 EVEGRLLPKSHGSGKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIAHTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A+K DSDS KKFPSKSCPLRYGT KIQED LFQ+GLR+FLG + KT GS +
Sbjct: 364 HARAYKKGDSDSHKKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNGSE-NK 422
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYS 420
W ITALSVSASKIVP+ SGT SI KYF+ GS+S Q DN ID AP SPSGSE+
Sbjct: 423 WGITALSVSASKIVPIPSGTHSITKYFSETFPHGSSSNQSVDNVIDEVAPSSPSGSENCM 482
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGL 458
+ ELQ E P E + H A L Q +K +NGL
Sbjct: 483 GVIPNELQLECPEEDTGVNHPKACLDQQILKG--FNGL 518
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/470 (67%), Positives = 374/470 (79%), Gaps = 1/470 (0%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK+VCPQI+L+QVPVARGKADL +YR+AGSEVV +L++KGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKKVCPQIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAEAML ETPPES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+RDK
Sbjct: 124 LDLTDAAEAMLVETPPESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDYRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLD
Sbjct: 184 LLACGTLIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLD 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGE
Sbjct: 244 SLPIKKMKQLGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLP SHGSGKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT
Sbjct: 304 EVQCRLLPNSHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTF 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA+A++ SDSDS KKFPSKSCPLRYG AKIQED NLF+AGLR++LGS+ G +G
Sbjct: 364 HATAYRLSDSDSHKKFPSKSCPLRYGAAKIQEDALNLFKAGLRDYLGSYRANILGDSNNG 423
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYST 421
WRIT+LSVSASKI+ + SG CSI KY + ++SEQ DN I L SG +YS
Sbjct: 424 WRITSLSVSASKIMTIPSGMCSITKYLHVQHSSCTSSEQPQDNDIQETALH-SGCTNYSV 482
Query: 422 LNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGT 471
++S E +E GE++ IE LG + + D S K+ T
Sbjct: 483 MDSNEAHDERTGEEMKIEDEHDRLGCTDYSVDLCEAFDKSTGEEKEEKAT 532
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/378 (78%), Positives = 334/378 (88%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDK
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTL
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTL 363
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 364 HASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLET 423
Query: 362 WRITALSVSASKIVPVLS 379
WRIT LSVSASKIV + S
Sbjct: 424 WRITGLSVSASKIVDIPS 441
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 308/408 (75%), Positives = 340/408 (83%), Gaps = 25/408 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAKEVCPQI LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASIDEVY
Sbjct: 64 VKRSMRGDEAKEVCPQILLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTD+AEAML +TPP SLD +D+E LKSH+LGL++++GND+K V+EWLCR DADHRDK
Sbjct: 124 LDLTDSAEAMLKDTPPNSLDVIDDEVLKSHVLGLKNENGNDAKEDVREWLCRNDADHRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV ELRMQVLKETEFTCSAGIAHNKM + L D
Sbjct: 184 LLACGAIIVAELRMQVLKETEFTCSAGIAHNKMDCNI--------------------LFD 223
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
KQLGGKLG+SLQNELGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI+GE
Sbjct: 224 C-----RKQLGGKLGSSLQNELGVDTVGDLLQFSEEKLQDRYGINTGTWLWNIARGINGE 278
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLPKSHGSGKSFPGP+ALKT+ASVQHWLNQLCEELSERLCSDLEQNKR+AHTLTL
Sbjct: 279 EVQGRLLPKSHGSGKSFPGPQALKTIASVQHWLNQLCEELSERLCSDLEQNKRMAHTLTL 338
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HASA+KSSDSDS KKFPSKS PLRYGTAKIQED FNLFQAGLRE+LG+ GVK GSH++G
Sbjct: 339 HASAYKSSDSDSHKKFPSKSGPLRYGTAKIQEDAFNLFQAGLREYLGAHGVKVLGSHHNG 398
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAA 409
W IT LSVSA+KI+ + SGT SIMKYFNG F S+Q PD+FI A
Sbjct: 399 WGITGLSVSANKIIDLPSGTSSIMKYFNGQSSFHCPSKQTPDSFIHDA 446
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 572 SNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDE 631
S N V + KE L A + DR Q +R ESW +I+EIDPSVI+ELP EIQDE
Sbjct: 475 SEVNLVELGKESLL--AEHRANYDRHNLTQNAER-ESWNYKIDEIDPSVINELPPEIQDE 531
Query: 632 IQAWLRPSKRPHRVKQGFTIADYFSPSK 659
++AWL+P KR VK+G TIA YFSP K
Sbjct: 532 VRAWLQPHKRARIVKKGATIAHYFSPPK 559
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 336/622 (54%), Positives = 412/622 (66%), Gaps = 62/622 (9%)
Query: 42 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 101
VVSILA+ G+CERASIDEVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+
Sbjct: 20 VVSILAKSGKCERASIDEVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGD 79
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
D K +V+ W+CR DAD RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASG
Sbjct: 80 DFKESVRNWICREDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASG 139
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
MNKPAQQT VP+++V+ LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE
Sbjct: 140 MNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQE 199
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
YG NTGTWLWNIARGISGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EEL
Sbjct: 200 HYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEEL 259
Query: 282 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 341
SERL SDLEQNKRIA TLTLHASAF+S DSDS KKFPSKSCP+RYG KIQED FNLFQA
Sbjct: 260 SERLGSDLEQNKRIASTLTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQA 319
Query: 342 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQL 401
LRE++GSFG+K QG+ WRIT LSVSASKIV + SGT SIM+YF S S
Sbjct: 320 ALREYMGSFGIKPQGNKLETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRS--- 376
Query: 402 PDNFIDA-APLSPSGSESYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP 460
D + ++ S SE S STE Q +P + +++ + + + + D
Sbjct: 377 ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDV 436
Query: 461 SCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFK 520
S + T+ S+ + NK ++ + + K N + K++G SI++ FK
Sbjct: 437 VSCPSNE--ATDVSTQSESNK-----GTQTKKIGRKMNNSKE-----KNRGMPSIVDIFK 484
Query: 521 SGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGDCLSESNQNQVNIP 580
+ + + S E D S K+ + S S+ +QVN
Sbjct: 485 NYNATPPSKQETQE---------DSTVSSASKRAKLS------------SSSHNSQVNQE 523
Query: 581 KERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSK 640
E + R W + +EID SV DELP EIQ E++++LR +K
Sbjct: 524 VE--------------------ESRETDWGYKTDEIDQSVFDELPVEIQRELRSFLRTNK 563
Query: 641 RPHRVK---QGFT--IADYFSP 657
+ + K G T IA YF P
Sbjct: 564 QFNTGKSKGDGSTSSIAHYFPP 585
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 343/668 (51%), Positives = 424/668 (63%), Gaps = 104/668 (15%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVARGKADL+ YR+AGSEVV+ILA KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKSVCPGINLVQVPVARGKADLNLYRSAGSEVVAILASKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML + PP+S +E+ EA KS+ILGL S D + + V+ WLCR DAD++DK
Sbjct: 124 LDLTDAAKEMLLQAPPDSQEEIFMEAAKSNILGLLS-DAGEKEKNVRAWLCRSDADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L
Sbjct: 183 LLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLA 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+EDKLQE YG NTGTWLW ARGISGE
Sbjct: 243 SLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEDKLQEQYGVNTGTWLWKTARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTL
Sbjct: 303 EVEDRLLPKSHGCGKTFPGPRALKNSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A K ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +G
Sbjct: 363 HARASKENERDSTKKFPSKSCPLRYGTRKIQEDAMKLFESGLHEFLES--------QNTG 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYST 421
W IT+LSV+ASKI + SGT SI++Y GP+ AAP P+ +S S
Sbjct: 415 WSITSLSVTASKIFDIPSGTSSILRYIKGPN--------------SAAP--PAIPDSSSV 458
Query: 422 LNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNK 481
L N++ + + E PS S K+ + T S S++ +
Sbjct: 459 PEDPSLDNDVFVKPIHEEQ-----------------CQPSTS-EKEDNNTHSVSTISAKQ 500
Query: 482 PQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLP 541
Q + R+ K + KG SSIL F G S H+ ++ L+
Sbjct: 501 CQANKEKRI------------SKKLPEVKGTSSILKFLSRGQ----STFHEKRKSDGLI- 543
Query: 542 LGDCL-------SESNK-KQVNIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTST 592
C SE+NK ++ N+P + D N T C S N
Sbjct: 544 ---CSHQGPGSSSEANKAEENNVPADAEDRNHTNSCAEPSGSN----------------- 583
Query: 593 STDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIA 652
+W I++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+
Sbjct: 584 ---------------TWMFNIQDIDPAVVEELPPEIQREIQGWVRPSKHPSTKRRGSTIS 628
Query: 653 DYFSPSKN 660
YF P+++
Sbjct: 629 SYFPPARS 636
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 336/668 (50%), Positives = 425/668 (63%), Gaps = 91/668 (13%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASIDEVY
Sbjct: 38 VFRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASIDEVY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DK
Sbjct: 98 LDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDK 156
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL
Sbjct: 157 LLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLA 216
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGE
Sbjct: 217 SLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGE 276
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTL
Sbjct: 277 EVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTL 336
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA AFK ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +G
Sbjct: 337 HARAFKKNEHDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTG 388
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYST 421
W IT+LSV+ASKI + SGT SI++Y GP + + +PD+ AA L+ +S
Sbjct: 389 WGITSLSVTASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALAI--PDSSFV 444
Query: 422 LNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNK 481
L N++ E + E PS S + + T S+S+ K
Sbjct: 445 PEDPSLDNDVFVEPIHEEE-----------------CQPSTSEKEDDNNTHSASAFSAKK 487
Query: 482 PQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLP 541
+ ++ R+ K +G SSIL F G S H+ ++ L+
Sbjct: 488 CRANEEKRI------------SKKLPGVQGTSSILKFLSRGQ----STLHEKRKSDGLI- 530
Query: 542 LGDC-------LSESNKKQV-NIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTST 592
C SE+ K N+P E D N+T C S N
Sbjct: 531 ---CSHQGPGSSSEAYKAGAHNVPAEAEDRNNTNSCAEPSGSN----------------- 570
Query: 593 STDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIA 652
+W +++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+
Sbjct: 571 ---------------TWTFNLQDIDPAVVEELPPEIQREIQGWVRPSKHPITKRRGSTIS 615
Query: 653 DYFSPSKN 660
YF P+++
Sbjct: 616 SYFPPARS 623
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/350 (79%), Positives = 320/350 (91%)
Query: 41 EVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG 100
+VVSILARKGRCERASIDEVYLDLTD+AEAML ETPPESL+ ++EE+ KSHILGL+S+D
Sbjct: 2 QVVSILARKGRCERASIDEVYLDLTDSAEAMLRETPPESLESINEESRKSHILGLKSEDA 61
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
ND++ V +WL R DA+H+DKLLACG LIV+ELRM+VLKET+FTCSAGIAHNKMLAKL S
Sbjct: 62 NDAQENVSKWLRRSDANHQDKLLACGALIVSELRMEVLKETQFTCSAGIAHNKMLAKLVS 121
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
GMNKPAQQT VP SSVKGLL+SLPIKKMKQLGGKLGTSLQ +LGV+TVGDLL+FSE+KLQ
Sbjct: 122 GMNKPAQQTVVPSSSVKGLLESLPIKKMKQLGGKLGTSLQTDLGVSTVGDLLQFSEEKLQ 181
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
E +G NTGTWLW+IARGI+GEEVQ RLLPKSHG+GKSFPGPRALKT+ASVQHWLNQLC+E
Sbjct: 182 ERFGINTGTWLWSIARGINGEEVQGRLLPKSHGAGKSFPGPRALKTIASVQHWLNQLCDE 241
Query: 281 LSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 340
L+ER+C DL+QNK+IAHT T++ASA+KS DS+S KKFPSKSCPLRYGTAKIQED FNLFQ
Sbjct: 242 LNERICCDLDQNKQIAHTFTVYASAYKSCDSESYKKFPSKSCPLRYGTAKIQEDAFNLFQ 301
Query: 341 AGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNG 390
AGLRE++GS GVKT G H++GW IT+LSVSASKIV + SGT SI KYF+G
Sbjct: 302 AGLREYIGSHGVKTLGHHHNGWGITSLSVSASKIVAIPSGTGSITKYFHG 351
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/391 (69%), Positives = 320/391 (81%), Gaps = 9/391 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DK
Sbjct: 124 LDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L
Sbjct: 183 LLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLV 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGE
Sbjct: 243 SLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL
Sbjct: 303 EVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 363 YARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK-------- 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 415 WSITSLSVSASKIFDIPIGTSSILRYIKGPN 445
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 606 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 660
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K+
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAKS 632
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/391 (69%), Positives = 320/391 (81%), Gaps = 9/391 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DK
Sbjct: 124 LDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L
Sbjct: 183 LLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLV 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGE
Sbjct: 243 SLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL
Sbjct: 303 EVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 363 YARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK-------- 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 415 WSITSLSVSASKIFDIPIGTSSILRYIKGPN 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 606 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 659
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 631
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/391 (69%), Positives = 320/391 (81%), Gaps = 9/391 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASIDEVY
Sbjct: 51 VKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASIDEVY 110
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S D ++ + +V+ WLCR DAD++DK
Sbjct: 111 LDLTDAAKEMLLESPPELLELIFEEATKSNILGLPS-DVSNREDSVRAWLCRADADYQDK 169
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L
Sbjct: 170 LLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLV 229
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGE
Sbjct: 230 SLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGE 289
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL
Sbjct: 290 EVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTL 349
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
+A A K + SDS KKFPSKSCPLRYGT KIQED LF++GL +FLGS K
Sbjct: 350 YARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK-------- 401
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
W IT+LSVSASKI + GT SI++Y GP+
Sbjct: 402 WSITSLSVSASKIFDIPIGTSSILRYIKGPN 432
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 606 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 659
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 565 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 618
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/411 (66%), Positives = 328/411 (79%), Gaps = 11/411 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DK
Sbjct: 124 LDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL
Sbjct: 183 LLACGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLA 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGE
Sbjct: 243 SLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTL
Sbjct: 303 EVEDRLLPKSHGCGKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA AFK ++ DS KKFPSKSCPLRYGT KIQED LF++GL EFL S +G
Sbjct: 363 HARAFKKNEHDSMKKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTG 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 412
W IT+LSV+ASKI + SGT SI++Y GP + + +PD+ AA L+
Sbjct: 415 WGITSLSVTASKIFDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALA 463
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/389 (68%), Positives = 312/389 (80%), Gaps = 9/389 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPV+R KADL+ YRNAGSEVV+IL+ KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKNVCPGINLVQVPVSRDKADLNVYRNAGSEVVAILSTKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ ML E+PPES + EEA KS+IL L S D D + VK WLCR DAD++DK
Sbjct: 124 LDLTDAAKEMLLESPPESSGSIFEEATKSNILDLPS-DAGDREENVKAWLCRADADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG ++V +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L
Sbjct: 183 LLACGAILVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLA 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLP+KKMKQLGGKLG+SLQ++LGV TVGDLL F+E+KLQE YG NTGTWLW ARGISGE
Sbjct: 243 SLPVKKMKQLGGKLGSSLQDDLGVETVGDLLGFTEEKLQEYYGVNTGTWLWKTARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ RLLPKSHG GK+FPGP+ALK +SV+ WL++LCEELSER+ SDL NKR+A TLTL
Sbjct: 303 EVEDRLLPKSHGCGKTFPGPKALKNNSSVKSWLDKLCEELSERIQSDLSCNKRVAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
A A K ++ +S KKFPSKSCPLRYGT KIQED LF++GL +F GS +G
Sbjct: 363 QARASKENEGNSMKKFPSKSCPLRYGTGKIQEDAMKLFESGLHDFW--------GSQNAG 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYFNG 390
W IT+LSV+ASKI + SGT SI+KY G
Sbjct: 415 WSITSLSVTASKIFDIPSGTNSILKYIKG 443
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/387 (66%), Positives = 309/387 (79%), Gaps = 9/387 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKHVCPGINLVQVPVAREKADLNIYRSAGSEVVAILSTKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA+ L E+PPES + + EEA KS+IL L S D ++ + V+ WLCR DAD++DK
Sbjct: 124 LDLTDAAKERLLESPPESSEIIFEEATKSNILDLSS-DVSNREENVRAWLCRADADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L
Sbjct: 183 LLACGAIIVAQLRIKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLA 242
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLP+KKMKQLGGKLG+SLQ++LGV TVGDLL F+E+KLQ+ YG NTGTWLW ARGISGE
Sbjct: 243 SLPVKKMKQLGGKLGSSLQDDLGVKTVGDLLTFTEEKLQDYYGVNTGTWLWKTARGISGE 302
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ R+LPKSHG GK+FPG +ALK ASV+ WL++LCEELSER+ SDL NKR+A TLTL
Sbjct: 303 EVEDRILPKSHGCGKTFPGSKALKNNASVKSWLDKLCEELSERIQSDLNSNKRVAQTLTL 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
HA A K ++ + KKFPSKSCPLRYGT KIQED LF++ L +F GS +G
Sbjct: 363 HARACKENECNLMKKFPSKSCPLRYGTGKIQEDAMKLFESALHDFW--------GSRNTG 414
Query: 362 WRITALSVSASKIVPVLSGTCSIMKYF 388
W IT+LSV+ASKI SGT SI++Y
Sbjct: 415 WSITSLSVTASKIFDDTSGTNSILRYI 441
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 609 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 660
W +E+IDP+V+ ELP EIQ EIQ W RPSK+ +G TI+ YF P+++
Sbjct: 581 WMFNVEDIDPAVVGELPLEIQREIQGWTRPSKQASTKPRGHTISSYFPPARS 632
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/306 (78%), Positives = 275/306 (89%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK+VCPQI+L+QVPVARGKADL +YR+AGSEVV +L++KGRCERASIDEVY
Sbjct: 69 VKRSMRGDEAKKVCPQIQLIQVPVARGKADLKTYRDAGSEVVRVLSKKGRCERASIDEVY 128
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAEAML ETPPES++ +D EALKSH+LGL+ ++ +D + V++WL +CD+D+RDK
Sbjct: 129 LDLTDAAEAMLVETPPESMEAIDVEALKSHVLGLDQEEQSDGQECVRKWLTKCDSDYRDK 188
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV ELRMQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLD
Sbjct: 189 LLACGTLIVAELRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLD 248
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGE
Sbjct: 249 SLPIKKMKQLGGKLGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGE 308
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ RLLP SHGSGKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT
Sbjct: 309 EVQCRLLPNSHGSGKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTF 368
Query: 302 HASAFK 307
HA+A++
Sbjct: 369 HATAYR 374
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/270 (78%), Positives = 243/270 (90%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD RDK
Sbjct: 124 LDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL
Sbjct: 184 LLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLS 243
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGE
Sbjct: 244 SLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGE 303
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
EVQ RLLPKSHGSGK+FPGPRALK++++V+
Sbjct: 304 EVQGRLLPKSHGSGKTFPGPRALKSLSTVR 333
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/378 (59%), Positives = 270/378 (71%), Gaps = 8/378 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGD AK VCP + LVQVPV KADLS YR+AGSEVV++L+R G+CERASIDEVY
Sbjct: 64 VKRSMRGDAAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV--KEWLCRCDADHR 119
LD+T+AAE + + + V EEA SHI+GL +S A + KEW CR DA
Sbjct: 124 LDVTEAAERL---SSKDLSTLVSEEASTSHIVGLPQVRWLESSAKLGTKEWFCRPDASRE 180
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
D LLACG +I+ ++R+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ L
Sbjct: 181 DHLLACGAIIIADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESL 240
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L +LPI K+ +LGGKLG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+
Sbjct: 241 LATLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSELKLQDMYGPNTGTWLWNTARGIN 300
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
G+EVQ R LPKSH SGK+FPGPRALKT+ +V +WL +L E L RL DL QN R AH L
Sbjct: 301 GDEVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLL 360
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGS 357
T+HAS S + KF SKS PLRYG KI ED+ LF+ L EF S G K Q
Sbjct: 361 TIHASCHIVSRATEAPKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSE 419
Query: 358 HYSGWRITALSVSASKIV 375
S W +T LS++AS I+
Sbjct: 420 ITSSWAVTGLSLTASNIM 437
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/376 (59%), Positives = 268/376 (71%), Gaps = 12/376 (3%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGD AK VCP + LVQVPV KADLS YR+AGSEVV++L+R G+CERASIDEVY
Sbjct: 64 VKRSMRGDAAKAVCPDLNLVQVPVLHEKADLSIYRDAGSEVVAVLSRVGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T+AA+ L+ +L V EEA SHI+GL + G KEW CR DA D
Sbjct: 124 LDVTEAAK-RLSSKDLSTL--VSEEASTSHIVGLPQELGT------KEWFCRPDASREDH 174
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG +IV ++R+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ LL
Sbjct: 175 LLACGAIIVADIRLAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESLLA 234
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LPI K+ +LGGKLG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+G+
Sbjct: 235 TLPISKIGKLGGKLGQELEGELGVKTVGDLLQFSEVKLQDMYGPNTGTWLWNTARGINGD 294
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ R LPKSH SGK+FPGPRALKT+ +V +WL +L E L RL DL QN R AH LT+
Sbjct: 295 EVQDRTLPKSHSSGKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLLTI 354
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGSHY 359
HAS + KF SKS PLRYG KI ED+ LF+ L EF S G K Q
Sbjct: 355 HASCHIEGRATEAPKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSEIT 413
Query: 360 SGWRITALSVSASKIV 375
S W +T LS++AS I+
Sbjct: 414 SSWAVTGLSLTASNIM 429
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/298 (66%), Positives = 233/298 (78%), Gaps = 26/298 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVAR KADL+ YR+AGSEVV+IL+ KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVAILSTKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES------------------------ 97
LDLTDAA+ ML E+PPE L+ + EEA KS+ILGL S
Sbjct: 124 LDLTDAAKEMLLESPPELLELIFEEATKSNILGLPSVIFVLHDLIVVSLQFDMNVTNRAS 183
Query: 98 --KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 155
+D + + +V+ WLCR DAD++DKLL+CG +IV +LR++VL+ET+FTCSAGIAHNKML
Sbjct: 184 YVQDVINREDSVRAWLCRADADYQDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKML 243
Query: 156 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
AKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL F+
Sbjct: 244 AKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFT 303
Query: 216 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG GK+FPGP+ALK ASV+ +
Sbjct: 304 EDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKEF 361
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 606 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 659
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 442 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 495
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/378 (54%), Positives = 262/378 (69%), Gaps = 8/378 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V+ MRGD+AK++CP IELVQVP A G A+++ YR+AG+EVV +L+R G CERASIDEVY
Sbjct: 64 VLRCMRGDDAKKMCPDIELVQVPTAHGHANVNYYRDAGTEVVEVLSRGGICERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T+AA A L + P SL + EEA K+HILGLE +DG ++ T EWLC+ + D
Sbjct: 124 LDITEAAAARLIKGLP-SLGTLSEEARKTHILGLE-EDGENA-MTAGEWLCQSNVPRCDA 180
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LLACG LIV ELR VL ET+FTCSAGI HNKMLAKL S M+KPAQQT +P S V LL
Sbjct: 181 LLACGALIVAELRAAVLAETQFTCSAGIGHNKMLAKLTSSMHKPAQQTLIPSSYVPTLLA 240
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
++P+KK+ LGGKLG SL +LGV T GDL++FS+ KLQE YG NTG WLW++ARG +G+
Sbjct: 241 TIPLKKIGHLGGKLGKSLTEDLGVKTPGDLIQFSKLKLQELYGVNTGNWLWDVARGKNGD 300
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+A++LPKS GK+F G AL + SV +WL ++C+EL E+L DLE + R A L
Sbjct: 301 EVKAKVLPKSISCGKTFAGRTALTNMTSVMYWLGEMCDELQEKLDIDLEVHNRKAKLLVF 360
Query: 302 HASA-FKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL----GSFGVKTQG 356
HA+ + + KKFPSKSCP+RYG KI D LF+ GLR+F VK
Sbjct: 361 HAAVQLRGGNPQPGKKFPSKSCPIRYGKEKILADARILFERGLRDFCPVNKSLSPVKGSS 420
Query: 357 SHYSGWRITALSVSASKI 374
+ W +TALS+ A I
Sbjct: 421 NSKCEWAVTALSIGAGGI 438
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 231/408 (56%), Gaps = 29/408 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V MRG EA+ CP I+LV VP RGKADL+ YR AG+EV+++L + ERAS+DE
Sbjct: 197 VTRQMRGAEARGKCPAIQLVTVPENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEA 256
Query: 61 YLDLTDAAEAMLA--ETPPESLD--EVDEEALKSHILGLESKDGND-SKATVKEWLCRCD 115
Y+D+TD + LA E + LD ++ + + H + E D D K ++ WL
Sbjct: 257 YVDVTDQVQTRLAQMEDQGQVLDPEQLHQTFIAGHDVAEEGVDIEDVRKRGLETWLT--S 314
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
AD K L G LI E+R V K+T F CSAGI+HNKMLAK+A G +KP +Q+ +P
Sbjct: 315 ADLATKRLGVGALIAEEMRAAVFKDTGFRCSAGISHNKMLAKIACGFHKPNRQSVLPPEG 374
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
+ + ++PI+K + LGGKLG S+ +LGV +GDLL+++E +LQ+ Y TGTWL++I
Sbjct: 375 LDKVYKTIPIRKFRNLGGKLGHSISEDLGVEYMGDLLRYTEKQLQKRYSEKTGTWLYSIC 434
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI E V+ R L KS G K+FPG AL T V+HW L EE+ RL + E N R
Sbjct: 435 RGIDDEPVRPRQLAKSTGCSKTFPGKNALDTRDKVKHWFRSLAEEVEHRLLREEETNNRT 494
Query: 296 AHTLTLH-ASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 353
A LT+ A K + + S+SC + + + KI +D F++ Q +
Sbjct: 495 AKHLTVSVGQAGKPLMTTA-----SRSCAIHQISSEKIAKDCFSVIQ----------NLN 539
Query: 354 TQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYF--NGPDKFGST 397
G+H + W IT L +SASK V S ++ F +GP K +T
Sbjct: 540 HAGNHQAAWSPAITYLGISASKFVEGGSSKSGSIQSFLSSGPSKPATT 587
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V MRG EA+ CP I+LV VP RGKADL+ YR AG+EV+++L + ERAS+DE
Sbjct: 55 VTRQMRGAEARGKCPAIQLVTVPENRGKADLTRYREAGAEVITVLCKYSDSVERASVDEA 114
Query: 61 YLDLTDAAEAMLAE 74
Y+D+TD + LA+
Sbjct: 115 YVDVTDQVQTRLAQ 128
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 232/413 (56%), Gaps = 32/413 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VGRNMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL-- 111
+DLT + + L T S+ ++ + LK +HI G ++ N A +++WL
Sbjct: 119 MDLTASVQERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDL 175
Query: 112 --CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
++ D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT
Sbjct: 176 LSSSTESSPADLHLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQT 235
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P SSV L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG
Sbjct: 236 VLPLSSVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGP 295
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WL+++ RGI E V+ R LPKS G K+F G L+T VQ+WL+QL EL ERL D
Sbjct: 296 WLYDLCRGIEFEPVKPRQLPKSIGCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDR 355
Query: 290 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLG 348
+ N R+A LT+ S S S+ C L RY K+ D+ + ++
Sbjct: 356 DVNGRVARQLTVGVRQAGGQRSGSF----SRCCALVRYDAMKMTNDSLTIIKS------- 404
Query: 349 SFGVKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 399
+ T G+H W +T L +SASK S + + + F D S S+
Sbjct: 405 ---LNTAGAHQEAWSPALTLLHLSASKFSDAPSSSSAGITGFLSSDAASSPSQ 454
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/214 (61%), Positives = 170/214 (79%), Gaps = 2/214 (0%)
Query: 42 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 101
VV+ILA KG+CERASIDEVYLDLTDAA+ ML + PP+S + + EA KS+ILGL + D +
Sbjct: 179 VVAILASKGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA-DAS 237
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
+ + V+ WLC+ +AD++DKLL CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SG
Sbjct: 238 EKEKNVRAWLCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSG 297
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
M+KPAQQT VP SSV+ LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE
Sbjct: 298 MHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQE 357
Query: 222 SYGFNTG-TWLWNIARGISGEEVQARLLPKSHGS 254
YG NTG + AR +E ++L + +GS
Sbjct: 358 QYGVNTGHGMVAAFARAAWLKEYHEKVLVEIYGS 391
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 164/440 (37%), Positives = 235/440 (53%), Gaps = 48/440 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP +++ +V + GKADL++YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWVDDAKKLCPDLQVARVRESHGKADLTNYREASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDE----------------VDEEALKSHILGLESKDGNDSKA 105
+DLT A + L + ++ EE+ + +L E +
Sbjct: 119 MDLTAAVQQRLKNMTDKQIEPSLLRTTYIQGYPQSSPAAEESAEDTVLDKEEQRSRG--- 175
Query: 106 TVKEWL------CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 159
+++WL + + L G LIV E+R V K T F CSAGI+HNK+LAKLA
Sbjct: 176 -LQQWLESLTFPSVGEQSSAELQLTVGALIVEEMRAAVEKHTGFRCSAGISHNKVLAKLA 234
Query: 160 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 219
G+NKP +QT +P SV L SLP+ K++ LGGKLGTS+ LG+ +GDL +FS+ +L
Sbjct: 235 CGLNKPNRQTVLPLDSVTELFSSLPVGKIRNLGGKLGTSITETLGIENMGDLTRFSKAQL 294
Query: 220 QESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCE 279
++ +G TG WL+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL+QL
Sbjct: 295 EQHFGEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLAL 354
Query: 280 ELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNL 338
EL ERL D E N R+A LT+ D R S+ C L RY KI DTF +
Sbjct: 355 ELEERLTKDREVNGRVAKMLTVGVRQL----GDKRMSSFSRCCALVRYEATKISSDTFAI 410
Query: 339 FQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGS 396
++ + T G+H + W ++ L +SASK V S I + + S
Sbjct: 411 IKS----------LNTAGNHQAAWTPPLSMLYLSASKFSDV-SSAGGIAGFLSS----DS 455
Query: 397 TSEQLPDNFIDAAPLSPSGS 416
TS Q P +P +GS
Sbjct: 456 TSTQPPREPKHVSPCKQTGS 475
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/207 (62%), Positives = 162/207 (78%), Gaps = 1/207 (0%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
MRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASIDEVYLDLT
Sbjct: 135 MRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASIDEVYLDLT 194
Query: 66 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLAC 125
DAA+ ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL C
Sbjct: 195 DAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLTC 253
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
G +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SGM KPAQQT VP SSV+ LL SLP+
Sbjct: 254 GAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMRKPAQQTVVPSSSVQDLLASLPV 313
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLL 212
KKM + K+ + E + V +L
Sbjct: 314 KKMYHVHEKITNFMAPEPMILFVSGVL 340
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 189/288 (65%), Gaps = 7/288 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V +MRGDEAK+ CP I LVQVPV RGKA+L+ YR+AG+EV+ +L CERAS+DE
Sbjct: 58 VTRNMRGDEAKQKCPDIALVQVPVLRGKANLAHYRDAGAEVLEVLTTYCDNCERASVDEA 117
Query: 61 YLDLTDAAEAMLA-ETPPESLDEVDEEALKSHILGLESK--DGNDSKATVKEWLCRCDAD 117
YLDLT++A+ L+ T PE +EV + I GL SK D S KEWL + +A
Sbjct: 118 YLDLTNSAQKKLSVMTVPEIAEEVWR---TTAIEGLSSKGSDTTISDELQKEWLSQLEAS 174
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
+ LA G +I E+R VL++T FTCSAG+A NK+LAKL G+NKP +QT +P S+V
Sbjct: 175 PYLRNLAAGAVIAAEMRHAVLEKTGFTCSAGVATNKVLAKLCCGLNKPDKQTLLPHSAVT 234
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L ++P++K++ LGGKLG+ L +EL V +GDLL+F + L+ +G G L+N+ RG
Sbjct: 235 NLFKTMPLRKVRHLGGKLGSQLHSELNVEFMGDLLQFKINDLKAQFGSKNGELLYNLCRG 294
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
I E V+AR LPKS GK+FPG L T V+ W+ QL EEL ERL
Sbjct: 295 IDNEPVRARQLPKSVSCGKNFPGKTKLSTCQQVKFWMEQLVEELHERL 342
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 258 bits (659), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 158/187 (84%), Gaps = 1/187 (0%)
Query: 42 VVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 101
VV+ILA KG+CERASIDEVYLDLTDAA+ ML + PP+S + + EA KS+ILGL + D +
Sbjct: 179 VVAILASKGKCERASIDEVYLDLTDAAKEMLLQAPPDSPEGIFMEAAKSNILGLPA-DAS 237
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
+ + V+ WLC+ +AD++DKLL CG +IV +LR++VL+ET+FTCSAGIAHNKMLAKL SG
Sbjct: 238 EKEKNVRAWLCQSEADYQDKLLPCGAIIVAQLRVRVLEETQFTCSAGIAHNKMLAKLVSG 297
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
M+KPAQQT VP SSV+ LL SLP+KKMKQLGGKLG+SLQ++LGV T+GDLL F+E+KLQE
Sbjct: 298 MHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGKLGSSLQDDLGVETIGDLLSFTEEKLQE 357
Query: 222 SYGFNTG 228
YG NTG
Sbjct: 358 QYGVNTG 364
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 221/405 (54%), Gaps = 17/405 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEA+E CP L +VP RGKADL+ YR+ G EV+ ++ G ERASIDE
Sbjct: 60 VTKQMRGDEAREKCPDCILYRVPEQRGKADLTRYRDGGKEVIDVMCSFGVVVERASIDEA 119
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWL---CRCDAD 117
Y+D+T + ML+++ ++D EE ++ +G D +D K V WL + +
Sbjct: 120 YIDMTVVIDKMLSDSTATAIDL--EELPNTYFVGW-GNDTDDVKG-VHGWLQALSEGNYN 175
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
D L G ++V ++R V ++T F CSAGI++NKMLAKLA G+NKP +QT +PF SV+
Sbjct: 176 DNDWKLTYGAILVEKMRAAVYEKTGFRCSAGISNNKMLAKLACGINKPNKQTVLPFRSVE 235
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
+ P+KK++ LGGKLG L+ E TT+ D++K E LQE + T TWL+ ARG
Sbjct: 236 EFFTTFPLKKVRNLGGKLGLVLREEFHCTTMADIVKIPERVLQERFDSKTATWLFWYARG 295
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
+ E V +R LPKS G K+F G AL + + HWL +LC E+SERL D E N R A
Sbjct: 296 VDHESVSSRRLPKSIGCNKNFTGLAALDSREKISHWLEELCAEVSERLEKDRETNNRTAK 355
Query: 298 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
LTL + D R ++S PL K+ ++ A L QG+
Sbjct: 356 LLTLTVRL----EGDIRPYSYTRSIPLTSSYEKM-----HMANACLAVISKENPCFKQGN 406
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP 402
+T L VSASK V L I ++F + + E+ P
Sbjct: 407 TRVPVVVTCLGVSASKFVDQLENNSRIDRFFVTKNSAETNKEKEP 451
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 165/418 (39%), Positives = 222/418 (53%), Gaps = 43/418 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE Y
Sbjct: 59 VSRGMWASEARALCPELALARVPQARGKADLTPYREASAEVMRVLSRFAAIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETP----PESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEW 110
LDLT +A L E P +L + + GL + G D + EW
Sbjct: 119 LDLTGSARLRLRELRGRPLPATLLP------STFVQGLPGEPGPDPAGKEELRQRGLDEW 172
Query: 111 LCRCDADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
L D+ D L G +IV E+R+ V + T F CSAGI+HNK LAKLA G+NKP +
Sbjct: 173 LASLSFDNPDCPDLQLTMGAVIVEEIRVAVEEATGFRCSAGISHNKTLAKLACGLNKPNR 232
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT V V L LP+ ++ LGGKLGT++ + LGV +G+L +FSE +LQ +G T
Sbjct: 233 QTLVSARFVPQLFSQLPVSSIRNLGGKLGTAITDILGVEYIGELTQFSETELQTHFGDKT 292
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
G+WL+++ RGI E V+ R LP+S G K+FPG AL T +VQHWL QL EL RL
Sbjct: 293 GSWLYDLCRGIEEEPVKNRYLPQSIGCSKNFPGKLALATQKAVQHWLLQLALELESRLNK 352
Query: 288 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREF 346
D QN R+A L + D+R S+ C L RY K+ D F L Q
Sbjct: 353 DRSQNHRVARQLMV----VIRQQGDTRV---SRLCALSRYDAQKMCNDAFTLIQT----- 400
Query: 347 LGSFGVKTQGSHYSGWRITALSV--SASKIVPVLSGTCSIMKYFNG---PDKFGSTSE 399
G+H + W +SV SASK ++ + I + G PD +TS+
Sbjct: 401 -----CNVAGAHQAAWSPPLISVQLSASKFSEPITLSTGIATFLTGDAQPDGTATTSQ 453
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/300 (48%), Positives = 182/300 (60%), Gaps = 16/300 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK+ CP+I LV+VP +RGKADL+ YR+AG EV+ +L + RC ERASIDE
Sbjct: 57 VTRQMRGDEAKKKCPEITLVRVPESRGKADLTRYRDAGREVIEVLCKFSRCVERASIDEA 116
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKS-HILGLESKDGNDSKAT--------VKEWL 111
Y+DLT+ L E P D V + L S H+ G ++ S + V +WL
Sbjct: 117 YIDLTEEVMKRLEERGP---DSVTVDMLSSTHVAGWQTDTAGQSSESEEINLAVGVYQWL 173
Query: 112 CRC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 168
DA D+ LA G I E+R V +ET F CSAGI HNK+LAKL G++KP QQ
Sbjct: 174 DSLRMRDASMYDRRLAVGAAIAEEMRAAVERETGFHCSAGIGHNKVLAKLCCGLHKPKQQ 233
Query: 169 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
T +P +SV L +LPIKK++ GGKLG SL ELGV +G L FSE +LQ G G
Sbjct: 234 TVLPHASVPQLYSTLPIKKVRGCGGKLGASLTEELGVEYMGQLAAFSEKELQAKCGDKCG 293
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
TWL+N+ RGI E V+ R + +S G GK+FPG L T V HWL QL EL+ERL D
Sbjct: 294 TWLYNLCRGIDYEAVKDRQVAQSIGCGKNFPGRECLDTKEKVLHWLTQLTSELAERLQKD 353
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 214/387 (55%), Gaps = 34/387 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE Y
Sbjct: 59 VSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHIL-------GLESKDGND-SKATVKEWLCR 113
LDLT +A L E L+ E L + + GL+ D + + ++EWL
Sbjct: 119 LDLTGSARERLRELRGRPLEA---ELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLAS 175
Query: 114 CDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
D+ D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT
Sbjct: 176 LSFDNVNCPDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTL 235
Query: 171 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 230
V SV L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+W
Sbjct: 236 VSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSW 295
Query: 231 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
L+++ RGI E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D
Sbjct: 296 LYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRS 355
Query: 291 QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGS 349
QN R+A L + D+R S+ C + RY KI D F L Q
Sbjct: 356 QNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQ--------- 399
Query: 350 FGVKTQGSHYSGWRITALSV--SASKI 374
G+H + W +SV +ASK
Sbjct: 400 -NCNMAGAHQAAWSPPLISVHLAASKF 425
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 214/387 (55%), Gaps = 34/387 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M EA+ +CP++ L +VP ARGKADL+ YR A +EV+ +L+R ERASIDE Y
Sbjct: 59 VSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAAIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHIL-------GLESKDGND-SKATVKEWLCR 113
LDLT +A L E L+ E L + + GL+ D + + ++EWL
Sbjct: 119 LDLTGSARERLRELRGRPLEA---ELLPTTFVQGLPAEPGLQPADKEELRRRGLQEWLAS 175
Query: 114 CDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
D+ D LA G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+NKP +QT
Sbjct: 176 LSFDNVNCPDLQLAMGAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTL 235
Query: 171 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 230
V SV L +P+ ++ LGGKLG ++ + LGV +G++ KFSE +LQ +G TG+W
Sbjct: 236 VSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSW 295
Query: 231 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
L+++ RGI E V+ R LP+S G K+FPG AL T VQHWL QL EL RL D
Sbjct: 296 LYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELESRLIKDRS 355
Query: 291 QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGS 349
QN R+A L + D+R S+ C + RY KI D F L Q
Sbjct: 356 QNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDAQKIFNDAFALIQ--------- 399
Query: 350 FGVKTQGSHYSGWRITALSV--SASKI 374
G+H + W +SV +ASK
Sbjct: 400 -NCNMAGAHQAAWSPPLISVHLAASKF 425
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 223/413 (53%), Gaps = 45/413 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V MRGD+A++VCP + LVQVPVA GKADL+ YR +G +V++ILAR ERASIDE Y
Sbjct: 42 VKRGMRGDDARKVCPDLNLVQVPVAHGKADLTLYRASGKQVLNILARLSVAERASIDECY 101
Query: 62 LDLTDAAEAMLAET---PPESLDEVDEEALKSHILGLESKDGNDS--KATVKEWLCRCDA 116
LD+T+ A+ LA + PP L ++ + + G ++ V W
Sbjct: 102 LDITEEAKRRLAASSAHPP----------LPINVGEVHGEGGTEAWWHRPVGAW------ 145
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
+LLACG +V ELR V +E ++CSAGIAHNK+LAKLASGM+KP+QQT V V
Sbjct: 146 GPGQRLLACGAAVVAELRAAVRRELGYSCSAGIAHNKILAKLASGMHKPSQQTLVTLDCV 205
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
GL+ LPI K++QLGGK G + L +TTVG+L +L+ WL ++R
Sbjct: 206 PGLMAGLPIPKLRQLGGKFGEEIMTALNITTVGELSAVPLRRLEAVCSQADALWLHRLSR 265
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 296
GI EEV+ R LP+S GK+F G ALK +V WL +L +EL ER+ +D N+R+
Sbjct: 266 GIDDEEVKERQLPQSISCGKTFRGHTALKAFPAVHKWLGELGDELEERITADRADNERVP 325
Query: 297 HTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQ 355
LT+ + + S+SC LR ++ + ED L +K
Sbjct: 326 RLLTV--GMWGEGGPGTSGGSVSRSCQLRRPESQPMAEDGLKL-------------IKRW 370
Query: 356 GSHYSGWRITALSVSASKIVPVLSGTCSIMKYF--------NGPDKFGSTSEQ 400
S GW IT+L ++AS +G+ +I ++ P GST+ Q
Sbjct: 371 ASDRPGWAITSLYMTASNFQAAPTGSSTITRFLKPKSAPGQQSPPPSGSTAAQ 423
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 222/394 (56%), Gaps = 41/394 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWVDDAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDE--VDEEALK-SHILGL---------ESKDGNDSKATVKE 109
+DLT A + L ++L++ +D LK ++I G ++D S+ V++
Sbjct: 119 MDLTAAVQQRL-----KNLNDSPIDAHLLKATYIQGYPQTTPERPAAAEDEQRSRG-VQQ 172
Query: 110 WLCRC------DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
WL + + L G LIV E+R V K T F CSAGI+HNK+LAKLA G+N
Sbjct: 173 WLAMLPLPAVGEQSSAELQLTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLN 232
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP +QT +P SV+ L SLP+ K++ LGGKLG S+ LGV +G+L +FS +L + +
Sbjct: 233 KPNRQTLLPLDSVRDLFSSLPVGKIRNLGGKLGASITETLGVENMGELTRFSLAQLGQHF 292
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
G TG WL+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL+QL EL E
Sbjct: 293 GEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLALELEE 352
Query: 284 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 342
RL D E N R+A LT+ D R S+ C L RY K+ D+F + ++
Sbjct: 353 RLTKDREVNGRVAKLLTVGVRQL----GDKRANSFSRCCALVRYEAPKLATDSFAIIRS- 407
Query: 343 LREFLGSFGVKTQGSHYSGWR--ITALSVSASKI 374
+ T G+H W + L +SASK
Sbjct: 408 ---------LNTAGAHQETWTPPLAMLHLSASKF 432
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 219/400 (54%), Gaps = 44/400 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP +++ +V + GKADL+ YR+A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWVDDAKKLCPDLQVARVRESHGKADLTHYRDASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT--------------- 106
+DLT A + L T E + LK+ + + G D +
Sbjct: 119 MDLTAAVQQRLKTTTEEQMSPC---LLKTTYIQGYPQSGLDPPSADASPEEMILYKEELR 175
Query: 107 ---VKEWLCRCDADHRDKL------LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
+++W+ +L L G LIV E+R V K+T F CSAGI+HNK+LAK
Sbjct: 176 SKGLQQWMESLPTPSSGELNCAELQLTMGALIVEEMRAAVEKQTGFRCSAGISHNKVLAK 235
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
LA G+NKP +QT +P SV L +SLPI K++ LGGK+G S+ L V +GDL +FS+
Sbjct: 236 LACGLNKPNRQTVLPLESVTELFNSLPIGKIRNLGGKMGASIIETLKVENMGDLTRFSQS 295
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
+L + +G TG WL+++ RG+ E V+ R LPKS G K+FPG +L T VQ+WL+QL
Sbjct: 296 QLVQHFGEKTGQWLYDLCRGVESEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQL 355
Query: 278 CEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 336
EL ERL D E N R+A LT+ D R S+ C L Y AK+ D+F
Sbjct: 356 ALELEERLNKDKETNGRVAKLLTVGVRQL----GDKRPSSFSRCCALVHYEAAKLSSDSF 411
Query: 337 NLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKI 374
+ ++ + T G+H + W +T L +SASK
Sbjct: 412 AIIKS----------LNTAGNHQAAWTPPLTLLHLSASKF 441
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 223/411 (54%), Gaps = 28/411 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V M G +A+E CP I L +VP GKADL+ YR AG+EV+ +L +C ERASIDE
Sbjct: 55 VTRGMMGQDAQEKCPNIHLFRVPETEGKADLTLYREAGAEVIEVLTGFSKCVERASIDEA 114
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKE-----WL-CR 113
Y+DLTD LA E E+ + L +++LG E ++ K+ +E WL +
Sbjct: 115 YVDLTDEVHKRLAGM--EENQEISPDWLPNTYVLGCEEEEKCTDKSVQRERGLITWLRSQ 172
Query: 114 CDA---DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
DA + +K LA G +IV E+R +V T F CSAGIA NKMLAKL G+NKP +QT
Sbjct: 173 SDAHTVNEHEKQLAVGAVIVEEMRARVHTVTGFRCSAGIASNKMLAKLVCGINKPNKQTL 232
Query: 171 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 230
+PFS++ + +KK++ GGK G S+ +L V T+GD+ +FS ++LQE +G TG+W
Sbjct: 233 LPFSNILHFFGGVKVKKVRGFGGKFGESVCEQLQVETMGDIRRFSRNQLQECFGDKTGSW 292
Query: 231 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
L++ RG E+V R L KS G K+F GP L T V+ WL+++ +E+ ERL D
Sbjct: 293 LYDTCRGQETEDVIDRQLTKSVGCSKNFRGPEMLVTKEQVKLWLSRMSKEIEERLLKDRA 352
Query: 291 QNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A +L +H + S + S +RY K+ +D + L R L
Sbjct: 353 SNNRVAKSLHVHIQYVVNKKVTSASRCASL---VRYNAQKLADDAYLLLSKFNRSLL--- 406
Query: 351 GVKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSE 399
H S W IT + +SASK + + I + P F S S+
Sbjct: 407 -------HQSSWSPPITCMGISASKFSDLSNTGRDIKSFLQDPSAFPSVSQ 450
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 212/388 (54%), Gaps = 32/388 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++C ++L +V A GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMFADDAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFAVVERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCR-------- 113
+DLTD+ + L E + + E LK+ + + G D + KE L R
Sbjct: 119 IDLTDSVQKRLREM---GVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLE 175
Query: 114 ----CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT
Sbjct: 176 SLPVGDPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQT 235
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+
Sbjct: 236 ILCQGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGS 295
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WL+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D
Sbjct: 296 WLYSLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDR 355
Query: 290 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLG 348
+ N R+A LT+ + S S+ C L RY KI D F L L
Sbjct: 356 DANNRVAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LK 403
Query: 349 SFGVKTQGSHYSGWR--ITALSVSASKI 374
SF G H + W +T L +SASK
Sbjct: 404 SFNAA--GMHQAAWSPPLTLLQLSASKF 429
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 212/388 (54%), Gaps = 32/388 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++C ++L +V A GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMFADDAKKLCADLQLARVREAHGKADLTHYREASVEVMEVMSRFAVVERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCR-------- 113
+DLTD+ + L E + + E LK+ + + G D + KE L R
Sbjct: 119 IDLTDSVQKRLREM---GVAPISGELLKNTYVQGFPQCGMDRDSLSKEELRRHGLEQWLE 175
Query: 114 ----CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
D D LA G +IV E+R V +ET F CSAGIAHNK+LAKLA G+NKP +QT
Sbjct: 176 SLPVGDPHSADVKLAVGAIIVEEMRAAVEEETTFQCSAGIAHNKVLAKLACGLNKPNRQT 235
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ SV GL LPI K++ LGGKLGTS++ L V +G L +F+ LQ +G TG+
Sbjct: 236 ILCQGSVPGLFSELPIGKIRHLGGKLGTSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGS 295
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WL+++ RGI E V+ R LPKS G K+FPG +L T VQ+WL QL EL RL D
Sbjct: 296 WLYSLCRGIEDEPVKPRQLPKSIGCSKNFPGKTSLSTREQVQYWLLQLSLELEGRLQKDR 355
Query: 290 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLG 348
+ N R+A LT+ + S S+ C L RY KI D F L L
Sbjct: 356 DANNRVAKLLTVGLNQMGKRLYGSM----SRCCALTRYDAQKISSDAFVL--------LK 403
Query: 349 SFGVKTQGSHYSGWR--ITALSVSASKI 374
SF G H + W +T L +SASK
Sbjct: 404 SFNAA--GMHQAAWSPPLTLLQLSASKF 429
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 153/394 (38%), Positives = 217/394 (55%), Gaps = 22/394 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +MRG EA+ + P +VQVP R KADL+ YR AG EV ++LAR G ERASIDE Y
Sbjct: 94 VKRNMRGREARALAPACAVVQVPTRRSKADLTLYREAGREVAAVLARGGTIERASIDEAY 153
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD- 120
LDLT++A+ +L ET + + E+A SH G + G + W R +++ R+
Sbjct: 154 LDLTESAKKVLEET---AWATILEKARTSHAAGASAVSGKGYASVA--WWNRDESEWREE 208
Query: 121 -KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
KLLA G I LR + E +T SAGIA NKMLAKL SGMNKPA QT + L
Sbjct: 209 EKLLAAGAYICFNLRKACVDELGYTLSAGIALNKMLAKLTSGMNKPASQTVLCPDHTSTL 268
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
LD LPI +++ LG K G L + L V T+G+L + KL+E G W+ ++ G+
Sbjct: 269 LDELPIDRIRGLGAKFGRELADGLNVKTIGELARTPLRKLEEVCGEEKAQWVRKVSLGLD 328
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+ V+AR +PKS G+GK+F G A++++AS +HWL +L EL++R +D E+ R+ L
Sbjct: 329 DDPVKAREMPKSIGTGKTFRGALAIRSIASAKHWLAELTAELNDRCEADEEEWNRVPKLL 388
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 359
TL S+ ++ S S+ CPLR G ++ +D L S
Sbjct: 389 TLGLSSPDERETSS--GHCSRRCPLRPGADEMAQDALTLLS-------------KWASGR 433
Query: 360 SGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 393
W IT +SVSAS V + + +++ F K
Sbjct: 434 ERWSITGMSVSASNFVSLEKDSGDVVEMFKNATK 467
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 215/402 (53%), Gaps = 24/402 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + +G D K + +WL
Sbjct: 119 IDLTSAVQERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNNTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKN-----CNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G+KT S +T L + A+K +C+ + F D
Sbjct: 410 GIKTDWSP----PLTMLFLCATKFSAPAPSSCTDITTFLSSD 447
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEV 60
V S++G EAKE CP I LVQVP R KADLS+YR A EV+ +L+ ERASIDE
Sbjct: 60 VKRSLKGKEAKEKCPGIHLVQVPEKRRKADLSNYRKASGEVMKVLSGFTSVIERASIDEA 119
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS-----KATVKEWL-CRC 114
+LDLT+ + + +SL E + +H+ G D + + +W C
Sbjct: 120 FLDLTEPVKDYINSNSFDSL-EFHADLKSTHVAGCNDDDDTHKDDCDLRISRGDWFKSSC 178
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
+D R +L ++V +R +L E FTCSAGI+HNKMLAKLA+GM+KP QQT +P S
Sbjct: 179 SSDER--VLIVAAILVQRIRETILNEVGFTCSAGISHNKMLAKLAAGMHKPNQQTILPQS 236
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
V + + +KK++ LGGKLG +Q++L + VG L ++S LQE +G TG+WL+ +
Sbjct: 237 QVDVVFSTTLLKKVRHLGGKLGEQVQDKLKIECVGQLQEYSLKVLQEKFGLKTGSWLYEL 296
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
RGI E++ R++ KS G GK+FPGP LKT +V++WL QL EL ERL D+ +N R
Sbjct: 297 CRGICHEKISNRIITKSIGCGKNFPGPSKLKTAKAVKYWLEQLSRELVERLEEDMTENTR 356
Query: 295 IAHTLTLHASAFKSSDSDSRK-KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 353
A ++T+H + S +R PS Y T+ I +++N G + V
Sbjct: 357 QAQSITVHFLPEGQASSVARTFALPS------YNTSLIVNNSWNAINKGHKP------VT 404
Query: 354 TQGSHYSGWR--ITALSVSASKIV 375
+ SH + W I + +SA K V
Sbjct: 405 NEESHLT-WTTGILNIHLSAGKFV 427
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 159/437 (36%), Positives = 236/437 (54%), Gaps = 46/437 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG+EAKE CP + L VP RGKAD S YR+AG EV++++ K C ERAS+D
Sbjct: 60 VTRHMRGEEAKEKCPDVVLASVPCLRGKADTSRYRSAGREVINVI--KKHCNIIERASVD 117
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRC 114
E YLD+TD ++ T SL+ + + + ++G ND SK T K W+
Sbjct: 118 EAYLDITDLVCKKMS-TYSISLNHLVTQLSNTFVVGYSEVGKNDEEERSKGT-KTWIMNV 175
Query: 115 DADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D + LA LIV E+R + +T F CSAGIA NK+LAKLA G++KP +QT +
Sbjct: 176 FENLEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAENKILAKLACGLHKPNRQTIL 235
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
P ++V L +LPIKK++ LGGK GT + L +GDL+++S LQ+ + TG WL
Sbjct: 236 PATAVSTLYSTLPIKKVRNLGGKFGTVVVESLNCNVMGDLVQYSLQYLQKRFDEKTGLWL 295
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+NIARGI E V RL+ KS G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+
Sbjct: 296 YNIARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEE 355
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG 351
N+R A +T+ +++ + S+ S+SC T N ++ G+
Sbjct: 356 NERRATLMTICYQYYQNKATVSQ----SRSC------------TLNSYKP------GNMA 393
Query: 352 VKTQG--SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAA 409
++ S + I L +SA K +P G+ + +F ++E P IDA
Sbjct: 394 IRCVQIISKSTQCPIAYLGISAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQ 445
Query: 410 PLSPSGSESYSTLNSTE 426
+ YS N+T+
Sbjct: 446 TKNTKVESIYSVENTTK 462
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 216/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + LVQV +RGKADL+ YR A EV+ +++R ERASIDE +
Sbjct: 62 VARSMWADDAKKLCPDLLLVQVHESRGKADLTKYREASVEVMEVMSRFAGIERASIDEAF 121
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A L + P S D + ++ G + +G K ++ +WL
Sbjct: 122 IDLTSAVRERLQKLQGQPISADLLPSTYIEGLPQGYTTTEGTVRKEEMRKQGLFQWLDSL 181
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP QT V
Sbjct: 182 QIDNTASPDLQLTMGAVIVEEVRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNSQTLV 241
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 242 SHGSVPQLFSQMPITKVRNLGGKLGASVVGILGIEYMGELTQFTESQLQSHFGEKNGSWL 301
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G GK+FPG AL T VQ WL QL +EL ERL D
Sbjct: 302 YAVCRGIEHDPVKPRQLPKTIGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 361
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A LT+ D R + C L Y K+ D F A LR +
Sbjct: 362 NDRMATQLTVTIRV----QGDKRLSSLRRCCALTHYDAHKMSHDAF----AVLRN-CNTS 412
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G++T+ S +T L +SA+K +C + F
Sbjct: 413 GIQTEWSP----PLTMLFLSATKFYASGPSSCPDITVF 446
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 159/437 (36%), Positives = 236/437 (54%), Gaps = 46/437 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG+EAKE CP I L VP RGKAD S YR+AG EV++++ K C ERAS+D
Sbjct: 60 VTRHMRGEEAKEKCPDIVLASVPCLRGKADTSRYRSAGREVINVI--KKHCNIIERASVD 117
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRC 114
E YLD+TD ++ T SL+ + + + ++G ND SK T + W+
Sbjct: 118 EAYLDITDLVCKRMS-TYSISLNHLVTQLSNTFVVGYSEVGKNDEEERSKGT-ETWIMNV 175
Query: 115 DADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D + LA LIV E+R + +T F CSAGIA NK+LAKLA G++KP +QT +
Sbjct: 176 FENLEDIEAQKLAIAGLIVEEIRADIFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTIL 235
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
P ++V L +LPIKK++ LGGK G + L +GDLL++S LQ+ + TG+WL
Sbjct: 236 PAAAVSTLYSTLPIKKVRNLGGKFGDVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWL 295
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+NIARGI E V RL+ KS G+ K FPG +A+ ++ ++HW +L E+ ERL DLE+
Sbjct: 296 YNIARGIDNEPVNIRLVSKSIGACKKFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEE 355
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG 351
N+R A +T+ +++ + S+ S+SC T N ++ G+
Sbjct: 356 NERRATLMTICYQYYQNKATVSQ----SRSC------------TLNSYKP------GNMA 393
Query: 352 VKTQG--SHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAA 409
++ S + I L +SA K +P G+ + +F ++E P IDA
Sbjct: 394 IRCVQIISKSTQCPIAYLGISAGKFIPA-KGSGNFRNFF-------KSNESEPHKKIDAQ 445
Query: 410 PLSPSGSESYSTLNSTE 426
+ YS N+T+
Sbjct: 446 TENTKVESIYSVENTTK 462
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 198/358 (55%), Gaps = 19/358 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKADL+ YR A EV+ +++R ERASIDE +
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKADLTKYREASVEVMGVMSRFAGIERASIDEAF 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + +G D K + +WL
Sbjct: 119 IDLTGAVQERLQKLQGQPISADLLPTTYIEGLPQGRTTAEGTDQKEETRKQGLFQWLESL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + KET F CSAGI+HNK+LAKLA G+NKP QT V
Sbjct: 179 RIDNTTSPDLQLTVGAVIVEEMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNHQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI +++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SLGSVPQLFSQMPISRIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D
Sbjct: 299 YGMCRGIEHDPVRPRQLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ----AGLR 344
N R+A L + D R + C L RY K+ D F + + +G+R
Sbjct: 359 NDRVATQLAVIIRV----QGDKRLSSVRRCCALTRYDAHKMSHDAFAVIRNCNTSGIR 412
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 216/392 (55%), Gaps = 27/392 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V MRG+EAKE CP I L VP RGKAD S YR+AG EV+ +L + ERAS+DE
Sbjct: 59 VTRHMRGEEAKEKCPDIVLAIVPSQRGKADTSRYRSAGREVIDVLKKYCNIVERASVDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---EWLCRCDAD 117
YLD+T + L++ +S D + ++ S+I+G D N+ + K +WL D
Sbjct: 119 YLDITQIVDDKLSKEIIDS-DSISKQLENSYIVGFSESDINNEEQRSKGLQDWLSELADD 177
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
+ + LA V +R +V T F CSAGI+ NK+LAKLA G++KP +QT +P S+V
Sbjct: 178 IQIQRLAIAGAFVEHIRKEVYDTTGFRCSAGISFNKILAKLACGLHKPNRQTILPASAVP 237
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L SLP+KK++ LGGKLG + + L + DLL +S LQ + TG WL+NIARG
Sbjct: 238 ELYGSLPVKKVRNLGGKLGDMVIDSLKCNVMADLLPYSLQYLQNRFDEKTGMWLYNIARG 297
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
I E V RL+ KS G+ K FPG +A+ + ++HW+ +L E+ ERL DLE+N+R A
Sbjct: 298 IDSEPVTPRLVSKSIGACKRFPGKQAIVELDVLKHWIGELSAEVCERLEQDLEENERKAS 357
Query: 298 TLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 356
L + +F+ D + S++ L Y K+ E + N+ ++ L SF
Sbjct: 358 QLIV---SFQYC-QDKKLVSQSRTVALTSYKQEKVAEQSLNIVVKATQQLLISF------ 407
Query: 357 SHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
L +SA K + G+ + M +F
Sbjct: 408 ----------LGLSAGKFIKA-KGSENFMNFF 428
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 198/354 (55%), Gaps = 23/354 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------W 110
+DLT A + L + P S D + ++I GL +A KE W
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLP----TTYIEGLPRNPATAEEAVQKEKMRNQGLLQW 174
Query: 111 LCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
L +D D L G +IV E+R + K+T F CSAGI+HNK+LAKLA G+NKP +
Sbjct: 175 LHSLQSDDSTSPDLQLTVGAMIVEEMRAAIEKQTGFQCSAGISHNKVLAKLACGLNKPNR 234
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT V +SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G
Sbjct: 235 QTLVSHASVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGGKN 294
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL
Sbjct: 295 GSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALSTREQVQWWLLQLAQELEERLTK 354
Query: 288 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
D N R+A LT+ D R + C L RY K+ D F + +
Sbjct: 355 DRNDNDRVATQLTVSIRV----QGDKRLSSLRRCCALSRYDAYKMSHDAFAVIK 404
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 218/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV RGKADL+ YR A EV+ +++R ER+SIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRETRGKADLTKYREASVEVMKVMSRFAVIERSSIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT+A + L + P + + + ++ G + +G+ K ++ +WL
Sbjct: 119 VDLTNAVQERLQKLQAQPVTANSLASTYIQGFPHGTRALEGSIQKDEIRKQGVIQWLESL 178
Query: 115 ---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 PFDDSGSPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L LPI K++ LGGKLG S+ + LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSHLPISKIRNLGGKLGASVIDTLGVEYMGELTQFTELQLQNHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKIALATQEQVKWWLLQLAQELEERLIKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A LT+ D R + C L Y ++ D F L + +
Sbjct: 359 NDRVATQLTVSIRV----QGDRRLSSLRRCCALVCYDAHRMSNDAFALIRN-----CNTA 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G+K + S +T L + A+K P + +C+ + F
Sbjct: 410 GIKAEWSP----PLTMLFLCATKFSPSVPPSCTDITSF 443
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 191/324 (58%), Gaps = 14/324 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG EAKE CP I L VP RGKAD S YR AG EV+ ++ K C ERAS+D
Sbjct: 59 VTRHMRGKEAKEKCPDIVLASVPCLRGKADTSRYRKAGREVIQVI--KKHCNVIERASVD 116
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT---VKEWLCRCD 115
E YLD+TD + LA T S EV ++++G ND + ++ W+
Sbjct: 117 EAYLDITDIVDKRLA-TSKVSPKEVILSLANTYVVGYSEVGKNDEEERYQGLQTWILDSF 175
Query: 116 ADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
+ D + LA ++V E+R + +ET F CSAGIA NK+LAKLA G++KP +QT +P
Sbjct: 176 NELHDIQTQRLAVAGIMVEEMRESIYRETGFRCSAGIAQNKILAKLACGLHKPNRQTILP 235
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
+V L +LPIKK++ LGGK G ++ LG +GDL+++S ++LQ+ + TG WL+
Sbjct: 236 EVAVSSLYSTLPIKKVRNLGGKFGDNVIESLGCNVMGDLMQYSLEQLQKHFDEKTGFWLY 295
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
NIARGI E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL D +N
Sbjct: 296 NIARGIDDEPVTNRLLAKSIGACKQFPGKQAITSLEMLKHWAGDLAAEVCERLEEDFVEN 355
Query: 293 KRIAHTLTL--HASAFKSSDSDSR 314
+R A L + H KS+ S +R
Sbjct: 356 QRRATLLVISYHYYQNKSTISQTR 379
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 216/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QTDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F++ + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G++T+ S +T L + A+K +C+ + F
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 216/402 (53%), Gaps = 24/402 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 IDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G++T+ S +T L + A+K +C+ + F D
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 193/324 (59%), Gaps = 15/324 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG+EAKE CP + LV VP RGKAD+S YRNAG EV++I+ K C ERAS+D
Sbjct: 60 VTRHMRGEEAKEKCPDLILVSVPCLRGKADISRYRNAGREVINII--KEHCNVIERASVD 117
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT---VKEWLCRCD 115
E YLD+TD ++ + ++ + + ++G ND + +K W+
Sbjct: 118 EAYLDITDMVHKRMSTNL--NFSDLATQLSNTFVVGYSEIGKNDEEERSKGIKTWIKNVF 175
Query: 116 ADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
+ D + LA LIV ++R + + F CSAGIA NK+LAKLA G++KP +QT +P
Sbjct: 176 EEFEDIEAQKLAIAGLIVEKIRTDISDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILP 235
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
++V L +LPIKK++ LGGK G + L +GDLL++S LQ+ + TG WL+
Sbjct: 236 AAAVLTLYSTLPIKKVRNLGGKFGDIVTESLNCNVMGDLLQYSLQYLQKRFDEKTGLWLY 295
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
NIARGI E V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ ERL DL +N
Sbjct: 296 NIARGIDNEPVTVRLVSKSIGACKKFPGKQAITSLNMLKHWISELSAEICERLEQDLTEN 355
Query: 293 KRIAHTLTL--HASAFKSSDSDSR 314
+R A +T+ H K+ S SR
Sbjct: 356 ERRATLVTICYHYYQNKTIVSQSR 379
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 217/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + +VQV RGKA+L+ YR+A EV+ +++R ER+SIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLIVQVRETRGKANLAKYRDASVEVMEVMSRFAVIERSSIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE-----WLCRC 114
+DLT A + L + P + + + ++ G + +G K +++ WL
Sbjct: 119 VDLTSAVQERLQKLQAQPVTANLLASTYIQGFPHGTRALEGPIQKEEIRQQGVIQWLESL 178
Query: 115 DAD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D D L G +IV E+R+ + K T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 PVDDPSSSDLRLTVGAVIVEEMRVAIEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L LPI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSHLPIGKIRNLGGKLGASVIGTLGVEYMGELTQFTELQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T V+ WL QL +EL ERL D +
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGITALTTQEQVKWWLLQLAQELEERLTKDQKD 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L Y A K+ D F L + +
Sbjct: 359 NDRVALQLAVSIRI----QGDKRLSSLRRCCALAYYDAHKMSSDAFALIRN-----CNTA 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G+KT+ + +T L + A+K P +C+ + F
Sbjct: 410 GIKTEWAP----PLTMLFLCATKFSPSDPTSCTDITSF 443
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 216/402 (53%), Gaps = 24/402 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT + + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSSVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G++T+ S +T L + A+K +C+ + F D
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 201/364 (55%), Gaps = 17/364 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V MRG EAK+ CP I LVQVP RGKADL+ YR+AG V +L +RAS+DE
Sbjct: 58 VTRHMRGFEAKKKCPSINLVQVPELRGKADLTKYRDAGKRVADVLLTFTPLLQRASVDEA 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKEWLCRCDADHR 119
YLD+T+ E + + LD++ L + ++G E +D + T KE+
Sbjct: 118 YLDITEIVEKRIEK----GLDDLTLINLSNTFVVGCELEDFLHNAITNKEYSIP------ 167
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
+ LA G L+ E+R +V K T + CSAGIAHNK+LAKL ++KP +QT +P V+
Sbjct: 168 NLKLAVGGLVTEEIRREVFKVTGYKCSAGIAHNKILAKLVCSLHKPNKQTILPQEEVEKF 227
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
++ PI K+K LGGK G +L + VTT+G L K E L + Y TG WL NIARGI
Sbjct: 228 FETTPINKVKNLGGKFGQTLSEDFHVTTMGQLAKIPEKLLVQKYDEKTGNWLHNIARGID 287
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
E V +L+ KS K+FPG AL T +VQHWL +L E+SERL DL++N R A +
Sbjct: 288 MEPVTTKLIAKSIACCKNFPGKTALVTEENVQHWLGKLAAEMSERLDKDLKENNRRAKQI 347
Query: 300 TL-HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 358
+ A D S + P S Y KI + F + + R+ G++ +K G +
Sbjct: 348 IVSFAQEVNKKDVHSTRTHPLVS----YNEQKIAQAAFEVVKRFCRKSDGTYHLKFLGLN 403
Query: 359 YSGW 362
S +
Sbjct: 404 ASSF 407
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 216/402 (53%), Gaps = 24/402 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT + + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSSVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNAS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G++T+ S +T L + A+K +C+ + F D
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 447
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 197/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QTDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F++ +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIK 404
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 IDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/394 (37%), Positives = 214/394 (54%), Gaps = 24/394 (6%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 66 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 118
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSLQTDN 120
Query: 119 ---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 296 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKT 354
A L + D R + C L RY K+ D F++ + + G++T
Sbjct: 301 ATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQT 351
Query: 355 QGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ S +T L + A+K +C+ + F
Sbjct: 352 EWSP----PLTMLFLCATKFSASAPSSCTDITSF 381
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 62 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 121
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 122 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 181
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 182 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 241
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 242 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 301
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 302 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 361
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 362 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 214/398 (53%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ IL+R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASVEVMEILSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPTTYIEGLPQGPTTAEETVQKEEMRKRGLLQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
++ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIENTNSPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSHIPISKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSTLRRCCALTRYDAHKMSHDAFAVIRN-----CNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
GV+T+ S +T L + A+K +C+ + F
Sbjct: 410 GVQTEWSP----PLTMLFLCATKFSASAPSSCTDITVF 443
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 210/407 (51%), Gaps = 32/407 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + + +E + + +G S +K T + +
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQ 187
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 188 MSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKP 247
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ +
Sbjct: 248 NKQTILPLTETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDE 307
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 308 KNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRL 367
Query: 286 CSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
D +E N+R H + + D D + S+S LR Y I + +L +A
Sbjct: 368 EKDFIENNRRAKHMVVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANT 422
Query: 344 REFL--GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ FL GS I L +S K V SG + + F
Sbjct: 423 KTFLRPGSESALNNA-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 215/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADWLPSTYIEGLPQGPTTAEETIQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT +
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLL 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIHKIRSLGGKLGASVTEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F++ + +
Sbjct: 359 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFSVIKN-----YNTS 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G++T+ S +T L + A+K +C+ + F
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSF 443
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 210/407 (51%), Gaps = 32/407 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + + +E + + +G S +K T + +
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPSIGDYVNKITNRFANPYMDDERYQ 187
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 188 MSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKP 247
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + L DSLP+ K+K LGGK G + LG+ +G ++KFSE LQ +
Sbjct: 248 NKQTILPLTETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDE 307
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 308 KNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRL 367
Query: 286 CSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
D +E N+R H + + D D + S+S LR Y I + +L +A
Sbjct: 368 EKDFIENNRRAKHMVVQYV-----QDIDGEEVASSRSTALRDYDQESIVRLSLDLIKANT 422
Query: 344 REFL--GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ FL GS I L +S K V SG + + F
Sbjct: 423 KTFLRPGSESALNNA-------IKFLGISVGKFETVSSGQNKLQEMF 462
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 215/398 (54%), Gaps = 24/398 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM DEAK++CP + LV+VP +RGKADL+ YR A EV+ +++R ERASIDE +
Sbjct: 59 VTRSMWADEAKKLCPDLLLVEVPESRGKADLTKYREASVEVMEVMSRFAMIERASIDEAF 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A L + P S D + ++ G + +G D K ++ +WL
Sbjct: 119 VDLTSAVRERLQKLQGQPISADLLPSTYIEGLPQGSTTAEGTDEKEEMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + ++T CSAGI+HNK+LAKLA G+NKP QT +
Sbjct: 179 QTDNTTSPDLQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACGLNKPNHQTLI 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPISKIRNLGGKLGASVIGILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R + KS G K+FP AL T VQ WL QL +EL ERL D +
Sbjct: 299 YAMCRGIEHDPVKPRQILKSIGCCKNFPAKVALTTQEQVQWWLLQLAQELEERLIKDRNE 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L Y K+ D F A +R + S
Sbjct: 359 NDRVATQLAVSLRV----QGDRRLSSLRRCCALTCYDAHKMSHDAF----AVIRNYNVS- 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G++ + S +T L +SA+K +C+ + F
Sbjct: 410 GIQNEWSP----PLTMLFLSATKFSASTPSSCTDITNF 443
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 62 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 121
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 122 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 181
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 182 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 241
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 242 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 301
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 302 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 361
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 362 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 407
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 194/346 (56%), Gaps = 15/346 (4%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRLAVIERASIDEAYVDLT 60
Query: 66 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 118
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 120
Query: 119 ---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 296 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
A L + D R + C L RY K+ D F + +
Sbjct: 301 ATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 194/346 (56%), Gaps = 15/346 (4%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 66 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADH 118
A + L + P S D + ++ G + + K ++ +WL D+
Sbjct: 61 SAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 120
Query: 119 ---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V S
Sbjct: 121 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGS 180
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ +
Sbjct: 181 VPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC 240
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+
Sbjct: 241 RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRV 300
Query: 296 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
A L + D R + C L RY K+ D F + +
Sbjct: 301 ATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 193/350 (55%), Gaps = 23/350 (6%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLT 60
Query: 66 DAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC 114
A + L + P S D + ++I GL + KE WL
Sbjct: 61 SAVQERLQKLQGQPISADLLPS----TYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 116
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 117 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 176
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 177 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 236
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 237 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 296
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 297 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 41/409 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ +++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG-----NDSKATVK-------- 108
+DLT A + E L ++ + + + +L +G +K TV+
Sbjct: 119 VDLTSAVQ--------ERLQKLQGQPISADLLPTTYVEGLPQSPTPAKETVQKEEMRKQG 170
Query: 109 --EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
+WL D+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+N
Sbjct: 171 LHQWLDSLQIDNTISPDLQLTVGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLN 230
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP +QT V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +
Sbjct: 231 KPNRQTLVSQGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGVEYMGELTQFTESQLQNHF 290
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL E
Sbjct: 291 GEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEE 350
Query: 284 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 342
RL D N R+A L + D R + C L RY K+ +D F + +
Sbjct: 351 RLTKDQSDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAYKMSQDAFAVIRN- 405
Query: 343 LREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS-IMKYFNG 390
+ G++T+ S +T L + A+K G+C+ I + +G
Sbjct: 406 ----CNTSGIQTEWSP----PLTMLFLCATKFSVSGPGSCTDITAFLSG 446
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 193/350 (55%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ +++R ER SIDE Y
Sbjct: 59 VARSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSRFAGIERGSIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A L + P S D + ++ G + +G D K ++ +WL
Sbjct: 119 VDLTSAVHERLQKLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEEMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QTGNTTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIYKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R +PK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVRPRKIPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L Y K+ D F + +
Sbjct: 359 NDRVATQLAVSIRV----QGDRRLSSLRRCCALTHYDAHKMSRDAFAVIR 404
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 188/347 (54%), Gaps = 32/347 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEA+++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEARDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCR 113
YLD+TD + + + +E + ++ +G +K T +++ +
Sbjct: 128 YLDITDTVNLRIKQMESGAFALKPQELVNTYAVGYPDIGDYVNKITNRFSNPYIEDERFQ 187
Query: 114 CDADHRD---------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
D D +LL G + E+R V KET + CSAGIAHNK+LAKLA+G+NK
Sbjct: 188 LSYDQNDLPAVRQSDIRLL-IGAAVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGLNK 246
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + DSLP+ K+K LGGK G + +G+ +G L KFSE +LQ Y
Sbjct: 247 PNKQTILPLGEIPAFFDSLPVGKIKGLGGKFGEVVCETMGIKFLGQLCKFSEAELQRKYD 306
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL+NIARGI E V R KS G K FPG + + S+QHWL +L E++ER
Sbjct: 307 EKNGTWLFNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSSEINER 366
Query: 285 LCSDLEQNKRIAHTLTLH--------------ASAFKSSDSDSRKKF 317
L D +N R A + + ++A K D +S KF
Sbjct: 367 LEKDFIENNRKAKQMVVQYIQDIDGHEVASSRSTALKDYDKESLAKF 413
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 216/411 (52%), Gaps = 41/411 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ +++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGVMSHFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG----------------NDSKA 105
+DLT A + E L ++ + + + +L +G K
Sbjct: 119 IDLTSAVQ--------ERLQKLQGQPISADLLPTTYVEGLPQGPRPAAEETGQKEEMRKR 170
Query: 106 TVKEWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
+ EWL D+ D L G LIV E+R + ++T F CSAGI+HNK+LAKLA G+
Sbjct: 171 GLYEWLDSLQIDNLASPDLQLTVGALIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGL 230
Query: 163 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 222
NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ
Sbjct: 231 NKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGELTQFTESQLQNH 290
Query: 223 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 282
+G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL
Sbjct: 291 FGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELE 350
Query: 283 ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQA 341
ERL D + N R+A L + D R + C L RY K+ +D F + +
Sbjct: 351 ERLTKDQKDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSQDAFAVIRN 406
Query: 342 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
+ G++T+ S +T L + A+K +C+ + F D
Sbjct: 407 -----CNTSGIQTEWSP----PLTMLFLCATKFSVSAPASCTDITAFLSSD 448
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 199/364 (54%), Gaps = 23/364 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + + +E + + +G + +K T + +
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQ 187
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 188 MSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKP 247
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + L DSLP+ K+K LGGK G + + LG+ +G ++KFSE +LQ +
Sbjct: 248 NKQTILPLAETASLFDSLPVGKIKGLGGKFGEVVCDTLGIKFMGQVVKFSEVELQRKFDE 307
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 308 KNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRL 367
Query: 286 CSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
D +E N+R H + + D D + S+S L+ Y I + +L +A
Sbjct: 368 EKDFIENNRRAKHMVVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANT 422
Query: 344 REFL 347
+ FL
Sbjct: 423 KTFL 426
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 189/322 (58%), Gaps = 12/322 (3%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V MRG EAKE CP I L VP RGKAD + YR AG EV+ ++ + ERAS+DE
Sbjct: 58 VTRHMRGKEAKEKCPDIVLASVPCLRGKADTTRYRKAGHEVIKVIRKHCNVIERASVDEA 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILG---LESKDGNDSKATVKEWLCRCDAD 117
YLD+TD E L + S +E+ + ++G + D + ++ W+ +
Sbjct: 118 YLDITDIVEKRLDKI---SSNELISSLANTFVVGYSEIGKSDEEERHKGLQTWILDSFKE 174
Query: 118 HRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D + LA +IV E+R + ET F CSAGI+ NK+LAKLA G++KP +QT +P +
Sbjct: 175 LHDIQAQKLAVAGMIVEEIRASIYNETGFRCSAGISQNKILAKLACGLHKPNRQTILPEA 234
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+V L +L +KK++ LGGK G + LG +GDL+++S ++LQ+ + TG WL+NI
Sbjct: 235 AVASLYSTLSVKKVRNLGGKFGDVVVESLGCNVMGDLMQYSLEQLQKHFDEKTGLWLYNI 294
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
ARGI E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL DL +N+R
Sbjct: 295 ARGIDNEPVTNRLLSKSVGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEQDLIENQR 354
Query: 295 IAHTLTL--HASAFKSSDSDSR 314
A LT+ H +S+ S SR
Sbjct: 355 RATLLTISYHYYQNRSTVSQSR 376
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 195/332 (58%), Gaps = 20/332 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V +MRGD+AK CP+I L +VP+A GKADL+ YR+AG+EV+ +L + G ERAS+DE
Sbjct: 67 VTRNMRGDDAKAKCPEIILCKVPMANGKADLTRYRDAGAEVIQVLLQFGGVVERASVDEA 126
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE-----WLCRCD 115
Y+DLT +A + E L ++ E+ ++++G KD D +E + +
Sbjct: 127 YIDLTSVVDASMKEK--RILPDL-EQMGNTYVVGY-PKDSCDDTTNARESGLSAYRDSAN 182
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
+D + L IV ++R+ + ++T F CSAGI+HNKML+KL+ G+NKP +QT +PF+
Sbjct: 183 SDPDAERLLVAAAIVEKMRLAIYQQTSFRCSAGISHNKMLSKLSCGINKPNKQTILPFNM 242
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V GL ++ I K++ LGGKLG + GV +G L ++ L + +G TG WL+ +
Sbjct: 243 VAGLFQTIKIGKIRNLGGKLGKEIMFRFGVEKIGHLTNQTKQHLVDGFGEKTGLWLYEVC 302
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
GI E V+ R + +S G K+F G AL + V+HW+ L EL ERL D + N R+
Sbjct: 303 HGIDHEPVKERHVAQSVGCSKNFTGNDALGSRNKVKHWVRCLTTELVERLNKDKQMNNRV 362
Query: 296 AHTLTLHASAFKSSDSDSRKKFPSKSCPL-RY 326
+H LT+H KK S++CP+ RY
Sbjct: 363 SHALTIHIGI---------KKPISRTCPISRY 385
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 198/364 (54%), Gaps = 23/364 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + + +E + + +G + +K T + +
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMDDERYQ 187
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 188 MSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKP 247
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + L DSLP+ K+K LGGK G + LG+ +G ++KFSE +LQ +
Sbjct: 248 NKQTILPLAETASLFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFSEVELQRKFDE 307
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 308 KNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDRL 367
Query: 286 CSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
D +E N+R H + + D D + S+S L+ Y I + +L +A
Sbjct: 368 EKDFIENNRRAKHMVVQYV-----QDIDGEEVASSRSTALKDYDQESIVRFSLDLIRANT 422
Query: 344 REFL 347
+ FL
Sbjct: 423 KTFL 426
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 215/391 (54%), Gaps = 24/391 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A +EV+ +++R ERASIDE +
Sbjct: 59 VTKSMWADDAKKLCPDLLLAQVLESRGKANLTKYREASAEVMEVMSRFAMIERASIDEAF 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A L + P S D + ++ GL + +G K ++ +WL
Sbjct: 119 VDLTSAVRERLQKLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+D+ + L G +IV E+R + ++T CSAGI+HNK+LAKLA ++KP +QT V
Sbjct: 179 QSDNTSSPELQLTVGAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV + +PI K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SLGSVPQVFSQMPISKVRHLGGKLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI E V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHEPVRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L Y K+ +D F A +R + S
Sbjct: 359 NDRVATQLAVSIRVL----GDKRLSSLRRCCALTHYDAHKMSQDAF----AAIRNYNTS- 409
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGT 381
G++T+ S +T L + A+K +GT
Sbjct: 410 GIQTEWSP----PLTMLFLCATKFSASSAGT 436
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 191/325 (58%), Gaps = 17/325 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG EAKE CP + LV VP RGKAD+S YR+AG EV++++ K C ERAS+D
Sbjct: 60 VTRHMRGKEAKEKCPDLILVSVPCLRGKADISRYRSAGCEVINVI--KEHCNIIERASVD 117
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRC 114
E YLD+TD ++ + + + + ++G ND SK T K W+
Sbjct: 118 EAYLDITDMVHKRMSTNL--NFSNLATQLSNTFVVGYSEIGKNDEEERSKGT-KIWIKNI 174
Query: 115 DADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D + A LIV ++R + + F CSAGIA NK+LAKLA G++KP +QT +
Sbjct: 175 FEEFEDIEAQKFAIAGLIVEKIRADIFDKIGFKCSAGIAQNKILAKLACGLHKPNRQTIL 234
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
P ++V L +LPIKK++ LGGK G + L +GDLL++ LQ+ + TG WL
Sbjct: 235 PAAAVLTLYSTLPIKKVRNLGGKFGHIVTESLNCNVMGDLLQYPLQYLQKRFDEKTGLWL 294
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+NIARGI E V RL+ KS G+ K FPG +A+ ++ ++HW+++L E+ ERL DL +
Sbjct: 295 YNIARGIDNEPVNVRLVSKSIGACKKFPGKQAIISLNMLKHWISELSAEICERLERDLME 354
Query: 292 NKRIAHTLTL--HASAFKSSDSDSR 314
N+R A +T+ H K++ S SR
Sbjct: 355 NERRATLVTICYHYYQNKTTVSQSR 379
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 211/400 (52%), Gaps = 27/400 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V MRGDEAK+ CP+IEL QVP RGKADL+ YR AG EV +L + ERASIDE
Sbjct: 67 VTRHMRGDEAKQHCPEIELPQVPQVRGKADLTRYREAGKEVADVLKSFTPLLERASIDEA 126
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES-------------KDGNDSKATV 107
YLD+T+ + E E+ + +G E+ G +++
Sbjct: 127 YLDITERVLTRIHEMNEGKFQLRPEKLANTFAVGYENIGEFITKLSNTFDPAGGTAESNS 186
Query: 108 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
+E R + D L G IV E+R V + T F CSAGIAHNK+LAKL +G +KP +
Sbjct: 187 QE---RLEYKKSDIKLLVGASIVNEIRAAVKERTGFECSAGIAHNKILAKLTAGFHKPNK 243
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT +P +S+ L ++LP+KK+K LGGKLG + L + + +L++F E LQ+ +
Sbjct: 244 QTILPINSIPKLYETLPLKKVKGLGGKLGDQVCEVLKIKFMSELVQFPESVLQQHFEQRM 303
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
G+W++ +ARGI E V A+ KS G K FPG A+ +A++ HWLN+L E++ERL
Sbjct: 304 GSWMYLMARGIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLHHWLNELASEVTERLEK 363
Query: 288 DLEQNKRIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREF 346
DL++N R A LT+ ++ + D S + + Y +I D + + F
Sbjct: 364 DLDENNRTAKQLTVSYSQQIDNVDVSSTRSI----ALVAYDAERIAADALDAIKRNTERF 419
Query: 347 LGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMK 386
S T H I L +SA K P +G + +K
Sbjct: 420 FASNS--TTALHNP---IKFLGISAGKFEPNGAGKGAGIK 454
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 191/363 (52%), Gaps = 21/363 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V MRGDEAKE+C I L QVP R KAD YR+AG EV ++L R ERAS+DE
Sbjct: 69 VTRHMRGDEAKELCHDIILCQVPNIREKADTGKYRDAGKEVANVLQRFTNLLERASVDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + S +E + H +G ++ +K T + ++
Sbjct: 129 YLDITETVNQRVEQLQAGSFALKPQELVNCHAVGYDNIGDYVNKITNRFANPYVDDERYM 188
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 189 LAYDPNDLPAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKP 248
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + + L D LP+ K+K LGGK G ++ LGV +G +LK+SE +LQ
Sbjct: 249 NKQTILPLAEIPALFDQLPVGKIKGLGGKFGETVCETLGVKFLGQVLKYSEKELQRKLDE 308
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
G+WL NIARGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 309 KNGSWLHNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEMNDRL 368
Query: 286 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 344
D +N R A + + D D ++ S+S P+ Y + + L + +
Sbjct: 369 EKDFIENNRKAKQMVVQY----VQDVDGQEVASSRSTPINHYDQETLAKQALELIRTNTK 424
Query: 345 EFL 347
FL
Sbjct: 425 TFL 427
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 191/324 (58%), Gaps = 14/324 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG+EAK+ C + L VP RGKAD S YR+AG +V++++ K C ERAS+D
Sbjct: 60 VTRHMRGEEAKQKCADLILASVPCTRGKADTSRYRSAGRDVLNVI--KKHCNIIERASVD 117
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS---KATVKEWLCRCD 115
E YLD+TD ++ T S + + + + I+G ND + V WL
Sbjct: 118 EAYLDITDIVAKRMS-TSFLSQEYLVTQLSNTFIVGYSEIGKNDEEQRRKGVNAWLTNIF 176
Query: 116 ADHRD---KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
+ D + LA +IV ELR + ET F CSAGI++NK+LAKLA G++KP +QT +P
Sbjct: 177 EELEDVQAQELALAGVIVEELRQDIYNETGFKCSAGISNNKILAKLACGLHKPNRQTILP 236
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
++V L +LPIKK++ LGGK G + L +GDLL++S LQ+ + TG WL+
Sbjct: 237 PNAVSELYSTLPIKKVRNLGGKFGDVVIESLNCNVMGDLLQYSLQYLQKRFDDKTGLWLY 296
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
NIARGI E V RL+ KS G+ K FPG +A+ +V ++HW + E+ ERL DL++N
Sbjct: 297 NIARGIDNEPVTTRLISKSIGACKKFPGKQAITSVDVLRHWAGDMAAEVCERLEQDLQEN 356
Query: 293 KRIAHTLTL--HASAFKSSDSDSR 314
+R A LT+ H KS+ + SR
Sbjct: 357 ERRATLLTVCYHYYQNKSTVTQSR 380
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 195/364 (53%), Gaps = 23/364 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR- 119
YLD+T+ + + + +E + + +G + +K T + D D R
Sbjct: 128 YLDITETVNHRMQQMQIGAFALQPQELVNTFAVGYPNIGDYVNKITNRFANPYMD-DERF 186
Query: 120 ---------------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNK
Sbjct: 187 QMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNK 246
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + L DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ +
Sbjct: 247 PNKQTILPLADTASLFDSLPVGKIKGLGGKFGEVVCETLGIKYIGQVVKFTEVELQRKFD 306
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL+NI+RGI E V R KS G K FPG + + ++QHWL +L E+++R
Sbjct: 307 EKNGTWLFNISRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELSSEINDR 366
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
L D +N R A + + D D + S+S L+ Y I +L +A
Sbjct: 367 LEKDFIENNRRAKQMVVQY----VQDIDGEEVASSRSTALKDYDQESIVRFALDLIRANT 422
Query: 344 REFL 347
+ FL
Sbjct: 423 KTFL 426
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 182/325 (56%), Gaps = 21/325 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V MRG+EAK+ CP+I+L VP RGKAD++ YR AG +V +L R ERASIDE
Sbjct: 58 VTRHMRGNEAKQKCPEIQLPSVPCFRGKADITKYREAGKDVAKVLQRFTPLLERASIDEA 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC------ 114
YLD+TD + +D + S++L G D+ + + C
Sbjct: 118 YLDITDPVRKRILN--------IDVRDINSNMLPNNFALGYDTLDSFISDVHSCGLSSME 169
Query: 115 -DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D +H LL G LIV+E+R V ET + CSAGIAHNK+LAKL GMNKP +QT +P
Sbjct: 170 FDYEHSKHLLV-GALIVSEIRAAVYAETGYQCSAGIAHNKILAKLVCGMNKPNKQTVLPK 228
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
SV L +L +KK+K LGGK G + L ++T+G L +F+E LQ + G+WL+N
Sbjct: 229 HSVNILYKTLSLKKVKHLGGKFGDHVAETLNISTMGQLQRFTEKDLQARFDEKNGSWLYN 288
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
IARG+ E VQAR PKS G K G AL+ + S++ WL L +E+ RL D +N
Sbjct: 289 IARGVDLEPVQARFNPKSIGCCKQLRGKAALQDLVSLRKWLRDLGDEIENRLEQDSLENN 348
Query: 294 RIAH----TLTLHASAFKSSDSDSR 314
RI + +L AS K S SR
Sbjct: 349 RIPKQMVVSFSLQASKGKRDISSSR 373
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 195/364 (53%), Gaps = 23/364 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V MRGDEAK++CP+I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTKLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR- 119
YLD+T+ + + + +E + + +G + +K T + D D R
Sbjct: 128 YLDITETVNHRMQQMQSGAFALQPQELVNTFAVGYPNIGDFVNKITNRFANPYMD-DERF 186
Query: 120 ---------------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
D L G + E+R V KET + CSAGIAHNK+LAKLA+GMNK
Sbjct: 187 QMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNK 246
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + DSLP+ K+K LGGK G + LG+ +G ++KF+E +LQ +
Sbjct: 247 PNKQTILPLAETASFFDSLPVGKIKGLGGKFGEVVCETLGIKFMGQVVKFTEVELQRKFD 306
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL+NI+RGI E V R KS G + FPG + + ++QHWL +L E+++R
Sbjct: 307 EKNGTWLFNISRGIDMEAVTPRFYSKSIGCCQKFPGRNNITGLKTLQHWLGELSSEINDR 366
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGL 343
L D +N R A + + D D + S+S L+ Y I + +L +A
Sbjct: 367 LEKDFIENNRRAKQMVVQY----VQDIDGEEVASSRSTALKDYDQESIVRFSLDLIKANT 422
Query: 344 REFL 347
+ FL
Sbjct: 423 KTFL 426
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 191/346 (55%), Gaps = 15/346 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
LDLT A + L + P S D + ++ G + +G K + +WL
Sbjct: 119 LDLTSAVQERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D L G +IV E+R+ + K+T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QTESTSSPDLQLTMGAVIVEEMRVAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L + +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL
Sbjct: 239 SHGSVPQLFNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R + K+ G GK+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRPITKTLGCGKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNA 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 336
N R+A L + D R + C L Y K+ D F
Sbjct: 359 NDRVATQLVVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 195/363 (53%), Gaps = 21/363 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAKE+C I L +VP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 69 VTRHMRGDEAKELCHDIILCKVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + S EE + H +G ++ +K T + ++
Sbjct: 129 YLDITETVNQRVEQLQTGSFALKPEELVNCHAVGYDNIGEYVNKITNRFSNPYVDDERYV 188
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
D + D L G I E+R V ET + CSAGIAHNK+LAKLA+GMNKP
Sbjct: 189 LAYDPNDLPAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLAAGMNKP 248
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + + L D LP+ K+K +GGK G ++ LGV +G +LK+SE LQ
Sbjct: 249 NKQTILPLAQIPPLFDQLPVGKIKGMGGKFGETVCETLGVKFLGQVLKYSEKDLQRKLDE 308
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+GTWL NIARGI E V R KS G K FPG + + ++QHWL +L E+++RL
Sbjct: 309 KSGTWLHNIARGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLGELASEINDRL 368
Query: 286 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLR 344
D +N R A + + D D ++ S+S PL + + + + L +A +
Sbjct: 369 EKDFIENNRKAKQMVVQY----VQDIDGQEVASSRSMPLNQCDQETLVKQSLELIKANTK 424
Query: 345 EFL 347
FL
Sbjct: 425 TFL 427
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 177/317 (55%), Gaps = 16/317 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK +CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 69 VTRHMRGDEAKALCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---------EWL 111
YLD+T+ + + SL EE + S+ +G E+ +K T + ++
Sbjct: 129 YLDITETVNQRVQQLETGSLALKPEELVNSYAVGYENIGDYVNKITKRFANPYVDDERFM 188
Query: 112 CRCDAD------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
DA+ D L G I E+R V ET + CSAGIAHNK+LAKL +GMNKP
Sbjct: 189 LAYDANDLPAVRQSDLRLLIGACIAGEVRAAVKAETGYECSAGIAHNKILAKLVAGMNKP 248
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT +P + + L D LP+ K+K LGGK G ++ LG+ +G +LK++E +LQ
Sbjct: 249 NKQTILPLAEIPALFDQLPVGKIKGLGGKFGETVCETLGIKFLGHVLKYTEKELQRKLDE 308
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+GTWL IA GI E V R KS G K FPG + + S+QHWL +L E+++RL
Sbjct: 309 KSGTWLHQIACGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELASEMNDRL 368
Query: 286 CSDLEQNKRIAHTLTLH 302
D +N R A + +
Sbjct: 369 EKDFIENNRKAKQMVVQ 385
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 229/438 (52%), Gaps = 34/438 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V MRGDEA++ CP+I L QVP GKAD+S YR+AG EV ++L ERAS+DE
Sbjct: 67 VTRHMRGDEARQHCPEIVLPQVPQRGGKADISKYRDAGKEVAAVLQTFTPLLERASVDEA 126
Query: 61 YLDLTDAAEAMLAET-------PPESLDE---VDEEALKSHILGLESK-DGNDSKATVKE 109
Y+D+T+ A L + PE+LD V E++ ++ + DG S ++
Sbjct: 127 YMDITERVLARLHDMNVGKFHLQPETLDNTFAVGYESVGQYVQKISCDLDGRSSSQELES 186
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
R D L G IV E+R V ++T + CSAGIAHNK+LAKL +G NKP +QT
Sbjct: 187 EEDRVAYKKSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFNKPNKQT 246
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P S+ L +L IKK+K LGGKLG + L + + L +FSE +LQ + G+
Sbjct: 247 VLPLKSISKLYQTLQIKKVKGLGGKLGEQVCELLKIEFMSQLTQFSEKQLQAHFDERMGS 306
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
W++ +ARGI E V + KS G K FPG A+ +A++QHWL +L E+ +RL DL
Sbjct: 307 WMYLMARGIDLEAVTPKFNSKSIGCCKRFPGKNAITGLATLQHWLGELANEIQDRLEKDL 366
Query: 290 EQNKRIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 347
++N R A +T+ +A +D S ++S PL Y +I +D + FL
Sbjct: 367 DENNRTARQMTVSYAQQIGDNDVSS-----TRSVPLVCYEAERIAKDALEAIRRNTEVFL 421
Query: 348 --GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMK--YFNGPDKF---GSTSEQ 400
GS G + L +SA K +G S +K + N K G TS+
Sbjct: 422 KQGSNGALNNAVKF-------LGISAGKFENNATGKKSALKEMFSNIASKAPNPGETSKD 474
Query: 401 LPDNFIDAAPLSPSGSES 418
P ++ + A +P+ ES
Sbjct: 475 APTSY-NIASNAPNSGES 491
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 180/318 (56%), Gaps = 18/318 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCR 113
YLD+TD + + + +E + + +G + +K T + + +
Sbjct: 128 YLDITDTVNLRMKQLQIGAFALKPQELVNTFAVGYANIGDYVNKITNLFANPYINDERFQ 187
Query: 114 CDADHRD---------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
D D +LL G I E+R V K+T + CSAGIAHNK+LAKLA+G+NK
Sbjct: 188 LSYDQNDLPAVRQSDIRLL-IGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNK 246
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + + GL DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ +
Sbjct: 247 PNKQTILPLAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFD 306
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL+ ++RGI E V R KS G K FPG + + S+QHWL +L E+++R
Sbjct: 307 EKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDR 366
Query: 285 LCSDLEQNKRIAHTLTLH 302
L D +N R A + +
Sbjct: 367 LEKDFIENNRKAKQMVVQ 384
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 180/318 (56%), Gaps = 18/318 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAK++CP I L QVP R KAD S YR+AG EV ++L R + ERAS+DE
Sbjct: 68 VTRHMRGDEAKDLCPDIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-------VKEWLCR 113
YLD+TD + + + +E + + +G + +K T + + +
Sbjct: 128 YLDITDTVNLRMKQLQIGAFALKPQELVNTFAVGYANIGDYVNKITNLFANPYINDERFQ 187
Query: 114 CDADHRD---------KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
D D +LL G I E+R V K+T + CSAGIAHNK+LAKLA+G+NK
Sbjct: 188 LSYDQNDLPAVRQSDIRLL-IGASIAGEVRAAVKKDTGYDCSAGIAHNKILAKLAAGLNK 246
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + + GL DSLP+ K+K LGGK G + LG+ +G L+K++E +LQ +
Sbjct: 247 PNKQTILPLAEIPGLFDSLPVGKIKGLGGKFGEVVCETLGIKFLGQLVKYTEGELQRKFD 306
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL+ ++RGI E V R KS G K FPG + + S+QHWL +L E+++R
Sbjct: 307 EKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCKKFPGRNNITGLKSLQHWLGELSIEINDR 366
Query: 285 LCSDLEQNKRIAHTLTLH 302
L D +N R A + +
Sbjct: 367 LEKDFIENNRKAKQMVVQ 384
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 205/393 (52%), Gaps = 24/393 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V MRGDEAK+ CP I L QVP RGKAD+S YR AG EV ++L ERAS+DE
Sbjct: 67 VTRHMRGDEAKQHCPDIVLPQVPQVRGKADISKYREAGKEVAAVLQTFTPLLERASVDEA 126
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESK-----------DGNDSKATVKE 109
YLD+T+ A L + + ++ + +G +S DG S ++
Sbjct: 127 YLDITERVLARLRDMNEGKFQLLPDKLANTFAVGYDSIGEFVQKISGDLDGRVSSQELES 186
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
R D L G IV E+R V ++T + CSAGIAHNK+LAKL +G +KP +QT
Sbjct: 187 EEDRVAYKKSDIKLLIGASIVNEIRAAVKEKTGYECSAGIAHNKILAKLTAGFHKPNKQT 246
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P + + ++L +KK+K LGGKLG + L + T+ +L KF E LQ + G+
Sbjct: 247 ILPLKCISKMYETLSLKKVKGLGGKLGDQVCELLKIQTMSELAKFPEKVLQNHFDDRMGS 306
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
W++ +A+GI E V + KS G K FPG A+ +A+++HWL +L E+ ERL DL
Sbjct: 307 WMYLMAKGIDLEAVTPKFNSKSIGCCKRFPGKNAISGIATLKHWLGELANEIQERLEKDL 366
Query: 290 EQNKRIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 347
++N R A +T+ +A F +D S ++S PL Y +I D + FL
Sbjct: 367 DENNRTAKQMTVSYAQQFGQNDVSS-----TRSVPLVGYNAERIAADALEAIKRNTDVFL 421
Query: 348 GSFGVKTQGSHYSGWRITALSVSASKIVPVLSG 380
K+ S I L +SA K +SG
Sbjct: 422 -----KSDSSGALNKPIKFLGISAGKFDDNVSG 449
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 192/350 (54%), Gaps = 23/350 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV + GKA+L+ YR A EV+ +++R ERASIDE +
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESHGKANLTKYREASVEVMEVMSRFAGIERASIDEAF 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------W 110
LDLTDA E L + P S D + ++I GL + KE W
Sbjct: 119 LDLTDAVEERLQKLQGQPISADLLPS----TYIEGLPQGSTTAEETVQKEEMRKQGLLQW 174
Query: 111 LCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
L + + D L G +IV E+R + ++T CSAGI+HNK+LAKLA G+NKP +
Sbjct: 175 LGSLEIEGTASPDVRLTMGAVIVEEMRAAIERKTGLQCSAGISHNKVLAKLACGLNKPNR 234
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT V V L +PI+K++ LGGKLG+S+ LG+ +G+L +F+E +LQ +G
Sbjct: 235 QTLVSHKFVPQLFSQVPIRKVRNLGGKLGSSVIAILGIEYMGELTQFTESQLQWHFGEKN 294
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
G+WL+ + RGI + V+ R +PKS G K+FPG AL T VQ WL QL EL ERL
Sbjct: 295 GSWLYAMCRGIEHDPVRPRQIPKSVGCSKNFPGQTALATPEQVQWWLLQLARELEERLTK 354
Query: 288 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 336
D N R+A L + D R + C + RY K+ +D F
Sbjct: 355 DQTDNDRMATQLAVSIRV----QGDKRLSSLRRCCAITRYDAHKMSQDAF 400
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 218/408 (53%), Gaps = 31/408 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M +AK++CP ++L +VP A GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWAADAKKLCPDLQLARVPEAHGKADLTRYREASVEVMEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILG------LESKDGNDSK---ATVKEWLC 112
+DLT A L + + + V E+ ++I G LE N + +++WL
Sbjct: 119 MDLTSAVHERLQKMRGQPI--VAEQLATTYIQGFPDSFALEGTTDNKEEWRLHGLRQWLE 176
Query: 113 RC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
D + + L G +I+ E+R V T F CS GI+HNK+LAKLA G+NKP +QT
Sbjct: 177 SLPFEDLSNPELQLTVGAVIMEEMRAAVESATGFRCSVGISHNKVLAKLACGLNKPNRQT 236
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
V SV L +PI ++ LGGKLG S+ LGV VG L++FSE +LQ +G TG+
Sbjct: 237 LVSQGSVPQLFSKMPIGNIRNLGGKLGASVTELLGVEYVGQLIQFSELQLQMHFGDKTGS 296
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WL+++ RGI E V+ R LPKS G K+F G AL T VQHWL QL EL ERL D
Sbjct: 297 WLYDLCRGIEHEPVKPRQLPKSIGCSKNFRGREALVTQKQVQHWLLQLALELEERLNKDR 356
Query: 290 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLG 348
+QN R A L++ S + S+ C L +Y KI +D F + Q
Sbjct: 357 DQNNRTAKQLSIGIRMQGSKNPSGL----SRCCALSQYDAHKISQDAFAVIQ-------- 404
Query: 349 SFGVKTQGSHYSGWR--ITALSVSASKIVPVLSGTCSIMKYFNGPDKF 394
G + W +T L +SA+K V ++ + I + + ++
Sbjct: 405 --NCNAAGGLQAAWSPPVTLLQLSATKFVEEMTSSGDITAFLSNDSQY 450
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 189/346 (54%), Gaps = 15/346 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L Q+ GKA+L+ YR+A EV+ +++R ER SIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAVMERGSIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
LDLT A + L + P S D + ++ G + +G K + +WL
Sbjct: 119 LDLTSAVQERLQKLQNQPISADLLPTTCIEGFPQGPTTTEGTVEKEERRKQGLLQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QTESTSSPDLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L + +PI K++ LGGKLG S+ LGV +G+L +FSE +LQ +G G+WL
Sbjct: 239 SHGSVPQLFNQVPISKIRNLGGKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R + K+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRPITKTLGCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNA 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 336
N R+A L + D R + C L Y K+ D F
Sbjct: 359 NDRVATQLVVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 400
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 195/364 (53%), Gaps = 22/364 (6%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
+ MR DEAK++ P+I LV+VP R KAD + YR+AG EV ++L + + ERAS+DE
Sbjct: 69 ITRHMRADEAKDLLPEIVLVKVPNIRDKADTTKYRDAGKEVANVLQKFTKQLERASVDEA 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ E + +E + + +G ++ +K T K + D R
Sbjct: 129 YLDITETVNQRQKELQTGAFTLQPQELVNTFAVGYDNMGEYVNKIT-KRFSNPYMDDERF 187
Query: 121 KL----------------LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
+L L G I E+R V KET + CSAG+AHNK+LAKLA+G+NK
Sbjct: 188 QLVYDQNDLPSVRQSDIRLLIGACIAGEVRAAVKKETGYECSAGVAHNKILAKLAAGLNK 247
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT +P + GL ++LP+ K+K LGGK G + L + +G+LLKFSE +LQ +
Sbjct: 248 PNKQTILPLDEIPGLFETLPVGKIKGLGGKFGEIVCETLSIKFLGELLKFSEGELQRKFD 307
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
GTWL NI RGI E V R KS G K FPG + + ++QHWL++L E++ER
Sbjct: 308 EKNGTWLANICRGIDLECVTPRFYSKSIGCCKKFPGRNNITGLKTLQHWLSELATEITER 367
Query: 285 LCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 343
L D +E N+R + + + S + S + P Y + + +L +A
Sbjct: 368 LEKDAIENNRRAKQMVVQYVQDLDGEEVASSR---SNALPNHYDKETLANISLDLIKANT 424
Query: 344 REFL 347
+ FL
Sbjct: 425 KTFL 428
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 218/401 (54%), Gaps = 23/401 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDS----KATVKEWLCRCD 115
+DLT+A + L + P S D + ++ G +D + K + +WL +
Sbjct: 119 IDLTNAVQERLEKLQGQPVSADLLPSTYIEGLPRGPAVEDTVEKEDIRKQGLLQWLGSLE 178
Query: 116 AD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
D D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 KDDPTSPDLRLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVS 238
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
SV L +PI+K++ LGGKLG S+ + LGV +GDL +F+E +LQ +G G+WL+
Sbjct: 239 HGSVPQLFSQMPIRKIRSLGGKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLY 298
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+ RGI E V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N
Sbjct: 299 AMCRGIEHEPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDN 358
Query: 293 KRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFG 351
R+A L + + D R + C L RY K+ +D F A +R + G
Sbjct: 359 GRVATQLVVSIRV----EGDKRLSSLRRCCALTRYDAHKMSQDAF----ATIRN-CNTSG 409
Query: 352 VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
V+T+ S +T L + A+K C+ + F D
Sbjct: 410 VQTEWSP----PLTMLFLCATKFSASAPPACTDITVFLSSD 446
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 188/353 (53%), Gaps = 30/353 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV GKA+L+ YR A EV+ I++R ER SIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRELHGKANLAKYREASMEVMEIMSRFAVMERGSIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVK------------- 108
LDLT A + E L ++ + + + +L +G +T +
Sbjct: 119 LDLTSAVQ--------ERLQKLQNQRISADLLPTTCIEGFPQGSTTEGTVEKEERRKQGL 170
Query: 109 -EWLCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
+WL + D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NK
Sbjct: 171 LQWLDSLQTESTSSPDLQLTMGAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNK 230
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT V SV L + +PI +++ LGGKLG S+ LGV +G+L +FSE +LQ +G
Sbjct: 231 PNRQTLVSHGSVPQLFNQVPINRVRNLGGKLGASVIEILGVEYMGELTQFSESQLQSHFG 290
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G+WL+ + RGI + V+ R + K+ G K+FPG AL T VQ WL QL +EL ER
Sbjct: 291 ERNGSWLYAMCRGIEHDPVKPRPITKTIGCSKNFPGKTALSTRFQVQWWLLQLAQELEER 350
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTF 336
L D N R+A L + D R + C L Y K+ D F
Sbjct: 351 LTKDRNANDRVATQLVVSMRI----QGDRRLSSLRRCCALTHYDAHKMSHDAF 399
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 166/280 (59%), Gaps = 15/280 (5%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M GD+AK++C ++L +V A GKADL++YR A EV+ +++R ERASIDE Y+DLT
Sbjct: 1 MFGDDAKKLCADLQLARVREAHGKADLTNYREASVEVMEVMSRFAVVERASIDEAYIDLT 60
Query: 66 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE---------WLCRC-- 114
D+ + L E + + E LK+ + + D KE WL
Sbjct: 61 DSVQKRLREM---GVAPIPGELLKTTYVQGYPQCEPDCDTLSKEELRQRGLEQWLESLPI 117
Query: 115 -DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D D LA G +IV E+R V KET F CSAGIAHNK+LAKLA G+NKP +QT +
Sbjct: 118 GDPRSPDLKLAVGAIIVEEMRAAVEKETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQ 177
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
SV GL LPI K++ LGGKLGTS++ L V +G L +F+E LQ +G TG+WL++
Sbjct: 178 GSVPGLFSELPISKVRHLGGKLGTSIRESLSVEYIGQLTQFTEQHLQNHFGEKTGSWLYS 237
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
+ RGI E V+ R LPKS G K FPG AL T VQ+W
Sbjct: 238 LCRGIEDEPVKPRQLPKSIGCSKIFPGKTALSTQEQVQYW 277
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 216/405 (53%), Gaps = 39/405 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE------------ 109
+DLT A + + L+++ + + + +L +G TV+E
Sbjct: 119 IDLTSAVQ--------DRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGL 170
Query: 110 --WLCRC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
WL DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NK
Sbjct: 171 LQWLGSLQIDDATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNK 230
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G
Sbjct: 231 PNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFG 290
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G+WL+ + RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ER
Sbjct: 291 EKNGSWLYAMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEER 350
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGL 343
L D N R+A L + D R + C L +Y K+ +D F A +
Sbjct: 351 LTKDRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAI 402
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
R + G++T+ S +T L + A+K +C+ + F
Sbjct: 403 RN-CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITVF 442
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 206/394 (52%), Gaps = 33/394 (8%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDL 64
MRGD+A + CP + LV+V GKADLS YR A +V +L++ C +RASIDE Y+DL
Sbjct: 64 MRGDDALQACPDLNLVRVKELHGKADLSKYRTASQKVFEVLSQFSSCVQRASIDEAYVDL 123
Query: 65 TDAAEAMLAETPPESLDEVDEEAL-KSHILGLESKDGNDSKATVKEWL--CRCDADHRDK 121
T ++ + + + E L + + G + D +K WL + D
Sbjct: 124 TSVVNHHISS----NHNVITENDLPNTFVEGYSDDNSKDKNKNLKSWLHDVYNNELQDDY 179
Query: 122 LL--ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LL G ++V +LR + ++T F CSAGIA+NK+L+KLA G++KP QQT +P SSV L
Sbjct: 180 LLRLTIGAMMVEKLRQSIFEQTGFRCSAGIANNKILSKLACGLHKPNQQTMLPPSSVPHL 239
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+++PIKK+K LGGKLG ++ E + DL + LQ+ + T +L+ I++GI
Sbjct: 240 FETIPIKKVKNLGGKLGERIRQEFNCEFMSDLAAIPLNDLQQKFNDKTCNFLYQISKGID 299
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
E V++RL+PKS GS KSFP LK ++ WLN L ++ ++L D E NKR A +
Sbjct: 300 NEPVESRLIPKSIGSCKSFPT--GLKVKEEIKQWLNTLMNDIVDKLKDDYEANKRKATLM 357
Query: 300 TLHASAFKSSDSDSRKKFPSKSC--PLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
T+ D + K P+ C Y K+ + + S T+
Sbjct: 358 TVSVRYL-----DKKTKLPTSQCFEVTTYSHNKLLDTAY-----------SSLCTMTENQ 401
Query: 358 HYSGWR--ITALSVSASKIVPVLSGTCSIMKYFN 389
W+ I+ L V+ + V ++ SI YFN
Sbjct: 402 KSLQWKNPISFLGVAIGRFVE-MNVKSSIDNYFN 434
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 214/409 (52%), Gaps = 39/409 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE------------ 109
+DLT A + E L ++ + + + +L +G TV+E
Sbjct: 119 IDLTSAVQ--------ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGL 170
Query: 110 --WLCRCDAD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
WL +D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NK
Sbjct: 171 LQWLDSLQSDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNK 230
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT V SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G
Sbjct: 231 PNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFG 290
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ER
Sbjct: 291 EKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEER 350
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGL 343
L D N R+A L + D R + C L RY K+ +D F A +
Sbjct: 351 LTKDRNDNDRVATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAI 402
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
R + G++T+ S +T L + A+K C+ + F D
Sbjct: 403 RN-CNTSGIQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 214/401 (53%), Gaps = 39/401 (9%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y+DLT
Sbjct: 1 MWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAVIERASIDEAYIDLT 60
Query: 66 DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--------------WL 111
A + + L+++ + + + +L +G TV+E WL
Sbjct: 61 SAVQ--------DRLEKLQGQPISADLLPTTYIEGLPRGPTVEETVQKEEIRKQGLLQWL 112
Query: 112 CRC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 168
DA D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +Q
Sbjct: 113 GSLQIDDATSPDLQLTVGAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQ 172
Query: 169 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
T V SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G
Sbjct: 173 TLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNG 232
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
+WL+ + RGI + V+ R LPKS G K+FPG AL T VQ WL QL EL ERL D
Sbjct: 233 SWLYAMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALATRDQVQWWLLQLALELEERLTKD 292
Query: 289 LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 347
N R+A L + D R + C L +Y K+ +D F A +R
Sbjct: 293 RNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTQYDAHKMSQDAF----AAIRN-C 343
Query: 348 GSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ G++T+ S +T L + A+K +C+ + F
Sbjct: 344 NTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITVF 380
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 204/387 (52%), Gaps = 31/387 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V MRG +A VCP+I L+QVP RGKADL+ YR A EV +L+ ERASIDE
Sbjct: 46 VKRGMRGQDALAVCPEIHLIQVPTQRGKADLTKYRKASEEVFHVLSLCDAVVERASIDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLDLT + L + E + E+ALK L ++ +DS ++ + ++ R+
Sbjct: 106 YLDLTAIVKKELLDMRTEG-RYIAEDALKDTHLAVK----HDSIENIEALISLANSLMRN 160
Query: 121 KLL----------ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
++ G ++V +R Q+ ++T F CSAGIA NKMLAKLA G+NKP QQT
Sbjct: 161 DIIDENAEGIVLHVIGAVLVNRIRKQIFEKTNFYCSAGIAVNKMLAKLACGLNKPKQQTI 220
Query: 171 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG-- 228
V SSV ++PI+K++ LGGKLG + + T+ +L + L++ G T
Sbjct: 221 VLPSSVAEFFSTVPIRKVRNLGGKLGYKITKHFEIETMRELANLNPSLLEKFVGEKTKLV 280
Query: 229 -TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
WL + GI + V R LPKS G K+FPG AL++V V+HW QL EEL ERL
Sbjct: 281 LNWLLELCCGIDRDPVVIRQLPKSIGCSKNFPGRNALRSVNDVRHWTRQLSEELEERL-- 338
Query: 288 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL 347
N RIA +LT+ + ++++ ++ Y I +D F L Q EF
Sbjct: 339 ----NCRIAKSLTVGIRTEEKPENEANCHSSRQTFLRDYSAEVISQDAFGLIQ----EF- 389
Query: 348 GSFGVKTQGSHYSGWRITALSVSASKI 374
+ Q S + IT LS+SAS+
Sbjct: 390 -NTNSAKQSSIWLKPAITMLSMSASRF 415
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 193/354 (54%), Gaps = 21/354 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV RGKA+L+ YR A +V+ +++R ER SIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVREIRGKANLTKYREASVKVMEVMSRFAVIERGSIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKS-HILGLESKDGNDSKATVKE---------WL 111
+DLT + L + V + L + ++ GL G A KE WL
Sbjct: 119 VDLTQVVQERLQKL---RGQPVPADLLPTTYVQGLPRGSGAAQGAPQKEQARQEGLGQWL 175
Query: 112 CRC---DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 168
D+ D L G +IV E+R + K+T + CSAGI+HNK+LAKLA G+NKP +Q
Sbjct: 176 DSLPFGDSSSPDLRLTVGAVIVEEMRAAIEKDTGYQCSAGISHNKVLAKLACGLNKPNRQ 235
Query: 169 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
T + V L D +PI K++ LGGKLG S+ + LGV +G L F+E +LQ +G TG
Sbjct: 236 TLLSHGFVPELFDQMPIGKIRSLGGKLGASITDNLGVEYMGQLTHFTESQLQSHFGEKTG 295
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
+WL+ + RGI + V+ R +P + G K+FPG AL T VQ WL QL EL ERL D
Sbjct: 296 SWLFAMCRGIEHDPVKPRQVPNTVGCSKNFPGKTALATEEQVQWWLLQLALELEERLNKD 355
Query: 289 LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQA 341
+ N R+A L++ A D R + CPL RY K+ D L ++
Sbjct: 356 RDDNDRVATHLSVSARI----QGDKRLSSLRRGCPLTRYDARKMSSDALALIRS 405
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 71 MLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIV 130
ML + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DKLL CG +IV
Sbjct: 1 MLLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDKLLPCGAIIV 59
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
+LR++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQ
Sbjct: 60 AQLRVRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQ 119
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
LGGKLG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 120 LGGKLGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 157
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 167/266 (62%), Gaps = 20/266 (7%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
MRG EA++ CP + L+QVPVA K+D++ YR AG+EVV++LAR CERASIDEVY D+
Sbjct: 75 MRGKEARQACPDLILIQVPVAHKKSDINLYREAGAEVVNVLARFSSACERASIDEVYCDI 134
Query: 65 TDAAEAML--------AETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDA 116
TDAA L A+ P LDE+D K+ + G E + GN + + L R
Sbjct: 135 TDAALLQLDEIERNFGADVGPTLLDEMD----KTWVAGYEQQTGNGQEEWWRRPLSRWKT 190
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
R LLA G +VT++R VL+ET FTCSAGI+HNK+LAKL SG++KP QQT +P +
Sbjct: 191 SER--LLAAGAQVVTKMRRAVLEETSFTCSAGISHNKILAKLGSGLHKPNQQTILPTEAA 248
Query: 177 KGLLDSLPIKKMKQLGG-KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT----GTWL 231
+ L+ LPI +++ LGG KLG ++Q E V TVG+L K L +G + G W+
Sbjct: 249 QKLMQDLPISRLRGLGGEKLGKAIQEEFHVETVGELQKIPCPLLVSKFGDSPKPPGGLWV 308
Query: 232 WNIARGISGEEVQARLLPKSHGSGKS 257
+ IA+GI + V+ + L KS GSGKS
Sbjct: 309 YRIAKGICLQPVKDQELAKSRGSGKS 334
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 174/320 (54%), Gaps = 15/320 (4%)
Query: 32 LSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLA--ETPPESLDEVDEEALK 89
L YR A EV+ I++R ERASIDE Y+DLT A + L + P S D + ++
Sbjct: 5 LLRYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIE 64
Query: 90 SHILGLESKDGNDSKATVK-----EWLCRCDADH---RDKLLACGVLIVTELRMQVLKET 141
G + + K ++ +WL D+ D L G +IV E+R + +ET
Sbjct: 65 GLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERET 124
Query: 142 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 201
F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+
Sbjct: 125 GFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIE 184
Query: 202 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 261
LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG
Sbjct: 185 ILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGK 244
Query: 262 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 321
AL T VQ WL QL +EL ERL D N R+A L + D R +
Sbjct: 245 TALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRC 300
Query: 322 CPL-RYGTAKIQEDTFNLFQ 340
C L RY K+ D F + +
Sbjct: 301 CALTRYDAHKMSHDAFTVIK 320
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 205/402 (50%), Gaps = 46/402 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT + + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSSVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T EQ
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQ 336
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 337 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTS 387
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G++T+ S +T L + A+K +C+ + F D
Sbjct: 388 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 425
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 205/402 (50%), Gaps = 46/402 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT + + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSSVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QLDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T EQ
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALAT----------------------REQ 336
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L RY K+ D F + + +
Sbjct: 337 NDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTS 387
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
G++T+ S +T L + A+K +C+ + F D
Sbjct: 388 GIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 425
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 222/405 (54%), Gaps = 41/405 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +MRGD+A+ CP I+LV P A GKADL+ YR G +V IL+R ERASIDE Y
Sbjct: 89 VKRNMRGDQARAACPTIQLV--PTAHGKADLTLYRGEGKKVQDILSRLATTERASIDECY 146
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR-- 119
LDLTD A+ LA + + A + H++ ++G A W R H
Sbjct: 147 LDLTDEAQRRLAAC--GGMPPLPPSAEQVHVM----QEGGFVGAAA--WWQR--PPHHWL 196
Query: 120 --DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
++LLAC ELR V E ++CSAG+AH+K++AKL SG++KPAQQT +P S+V
Sbjct: 197 PGERLLACAAAAAAELRAAVRAELGYSCSAGVAHSKLMAKLCSGLHKPAQQTVLPASAVA 256
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
LL LPI K+K LGGKLG + +ELGV TVG L +L+ ++G WL +ARG
Sbjct: 257 ALLGQLPIPKLKGLGGKLGERVMSELGVETVGQLAAVPLSRLEAAFGEKEAQWLAALARG 316
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
+ ++V+ R L KS G GK+F G +AL+ +A+V WL +L EL+ERL DL++N R A
Sbjct: 317 ATDDKVEERRLAKSVGCGKTFRGRQALRDLAAVHKWLLELGGELAERLQEDLQENSREAK 376
Query: 298 TLTLHASA----FKSSDSDSRKKF--------PSKSCPLRYGTAK-IQEDTFNLFQAGLR 344
LT+ + + F ++SCPLR TA+ I ED L +
Sbjct: 377 LLTVSFAPQLPWVATQQPGGTALFHAAPGYHATTRSCPLRKATAEAIAEDALALIKRWAA 436
Query: 345 EFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 389
E QG GW ++ + V+AS V V S +I ++F
Sbjct: 437 E---------QGQ---GWSLSTMDVAASNFVAVQSAASAITRFFK 469
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 202/398 (50%), Gaps = 46/398 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRECRGKANLTKYREASVEVMQIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWL--- 111
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 IDLTSAVQERLQKLQGQPISADLLPTTYIEGFPQGPATAEDTVEKEEMRKKGLFQWLDSL 178
Query: 112 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
++ D L G +IV E+R + ++T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 ALVNSTSPDLQLTVGAVIVEEMRAAIERQTSFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL
Sbjct: 239 SLGSVPQLFSQMPICKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPKS G K+FPG AL T EQ
Sbjct: 299 YAMCRGIEHDPVKPRQLPKSIGCSKNFPGKTALAT----------------------REQ 336
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSF 350
N R+A L + D R + C L Y K+ D F A +R +
Sbjct: 337 NDRVATQLAVSIRV----QGDKRLSSLRRCCALSHYDAHKMSHDAF----AAIRN-CNTS 387
Query: 351 GVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
G++T+ S +T L + A+K +C+ + F
Sbjct: 388 GIQTEWSP----PLTMLFLCATKFSACAPSSCTDITAF 421
>gi|414880430|tpg|DAA57561.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 220
Score = 204 bits (520), Expect = 9e-50, Method: Composition-based stats.
Identities = 100/153 (65%), Positives = 127/153 (83%), Gaps = 1/153 (0%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SMRGDEAK VCP I LVQVPVARGKADL+ YR+AG+EVV+ILA KG+CERASIDEVY
Sbjct: 64 VKRSMRGDEAKRVCPGINLVQVPVARGKADLNLYRSAGAEVVAILASKGKCERASIDEVY 123
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LDLTDAA M+ + PP+S + + EA KS+ILGL + D ++ + V+ WLC+ +AD++DK
Sbjct: 124 LDLTDAANEMVLQAPPDSPEGIFMEAAKSNILGLPA-DASEKEKNVRAWLCQSEADYQDK 182
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
LLACG +IV +LR++VL+ET+FTCSAGIAHNK+
Sbjct: 183 LLACGAIIVAQLRVRVLEETQFTCSAGIAHNKV 215
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 174/327 (53%), Gaps = 44/327 (13%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC---ERASID 58
V MRG EAKE CP I LV VP RGKAD S YR AG EV+ ++ K C ERAS+D
Sbjct: 59 VTRHMRGKEAKEKCPDIVLVSVPCLRGKADTSRYRKAGREVIQVI--KKHCNVIERASVD 116
Query: 59 EVYLDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK---EWLC- 112
E YLD+TD + LA + P+ L ++++G + N+ + K W+
Sbjct: 117 EAYLDITDIVDKRLAASKVSPKQLISF---LANTYVVGYSEINKNNEEERCKGLQTWILN 173
Query: 113 ---RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
D KL G++I LAKLA G++KP +QT
Sbjct: 174 SFKELHDDQAQKLAIAGIII-------------------------LAKLACGLHKPNRQT 208
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P ++V L +LP+KK++ LGGK G + LG +GDLL++S ++L++ + TG
Sbjct: 209 ILPEAAVSSLYSTLPVKKVRNLGGKFGDVVVESLGCKVMGDLLQYSLEQLKKHFDEKTGF 268
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
WL+NIARGI E V RLL KS G+ K FPG +A+ ++ ++HW L E+ ERL D
Sbjct: 269 WLYNIARGIDDEPVTNRLLAKSIGACKKFPGKQAITSLEVLKHWAGDLAAEVCERLEEDF 328
Query: 290 EQNKRIAHTLTL--HASAFKSSDSDSR 314
+N+R A L + H +S+ S +R
Sbjct: 329 IENQRRATLLVISYHYYHNRSTVSQTR 355
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 194/402 (48%), Gaps = 91/402 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWVDDAKKLCPDLQVARVRESHGKADLTLYREASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHIL------GLESKDGNDSKAT--------- 106
+DLT A + + L +++ +++H+L G AT
Sbjct: 119 MDLTAAVQ--------QRLKDLNNWQIQAHLLKATYVQGFPPNPPERPAATEDVAHDREE 170
Query: 107 -----VKEWLCRC------DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 155
+++WL + + LA G LIV E+R V K+T F CSAGI+HNK+L
Sbjct: 171 QRARGLQQWLAMLPLPAAGEQSSAELQLAVGALIVEEMRAAVEKDTGFRCSAGISHNKVL 230
Query: 156 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
AKLA G+NKP +QT +P SV L SLPI K++
Sbjct: 231 AKLACGLNKPNRQTLLPLGSVGELFSSLPIGKIQ-------------------------- 264
Query: 216 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 275
WL+++ RG+ E V+ R LPKS G K+FPG +L T VQ+WLN
Sbjct: 265 --------------WLYDLCRGVDFEAVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLN 310
Query: 276 QLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQED 334
QL EL ERL D E N R+A LT+ D R S+ C L RY K+ D
Sbjct: 311 QLALELEERLTKDREANGRVAKMLTVGVRQL----GDKRPSSFSRCCALVRYEATKLATD 366
Query: 335 TFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKI 374
+F + ++ + T G H + W +T L +SA+K
Sbjct: 367 SFAIIRS----------LNTAGPHQATWTPPLTMLHLSATKF 398
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 194/392 (49%), Gaps = 50/392 (12%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 123 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 182
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+DLT + + E L ++ + + + +L +G T E
Sbjct: 183 VDLTSSVQ--------ERLQKLQGQPISADLLPSTYIEGLPQGPTTAE------------ 222
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
E +V K F C ++LAKLA G+NKP +QT V SV L
Sbjct: 223 ----------ETVQKVTKFLHFAC------FQVLAKLACGLNKPNRQTLVSHGSVPQLFS 266
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+PI+K++ LGGKLG S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI +
Sbjct: 267 QMPIRKIRNLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHD 326
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L +
Sbjct: 327 PVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAV 386
Query: 302 HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 360
D R + C L RY K+ D F + + + G++T+ S
Sbjct: 387 SIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP-- 435
Query: 361 GWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
+T L + A+K +C+ + F D
Sbjct: 436 --PLTMLFLCATKFSASAPSSCTDITSFLSSD 465
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 181/664 (27%), Positives = 288/664 (43%), Gaps = 115/664 (17%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V MRG EAKE CP I LV VP RGKAD S Y + L + + + I + +
Sbjct: 59 VTRHMRGKEAKEKCPDIVLVSVPCLRGKADTSRYIYIYIYMCVYLEERSQGLQTWISDSF 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+L D LA
Sbjct: 119 KELHDTHAQKLA------------------------------------------------ 130
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
GV IV E+R + KET+F CSAGIA NK+LAKLA G++KP QT +P ++V L
Sbjct: 131 --VAGV-IVEEIRASIYKETKFRCSAGIAQNKILAKLACGLHKPNCQTILPKTAVSSLFS 187
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LP+KK++ LGGK G + LG +GDL+++S ++LQ+ + TG WL+NIARGI E
Sbjct: 188 TLPVKKVRNLGGKFGDIVVESLGCNVMGDLVQYSLEQLQKRFDEKTGFWLYNIARGIDDE 247
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V RLL KS + K FPG +A+ ++ ++HW L E+ ERL D E+N+R A LT+
Sbjct: 248 PVTNRLLSKSIAACKKFPGKQAITSLEVLKHWAKDLTAEVCERLEQDYEENQRRATLLTI 307
Query: 302 HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 360
+++ + S+ ++S L Y KI ++ TQ
Sbjct: 308 SYHYYQNRSTVSQ----TRSLVLNSYKPDKIASQCVDVITKA-----------TQCP--- 349
Query: 361 GWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYS 420
+ + +SASK VP S +K+F S++ ID + + S +
Sbjct: 350 ---VAYMGISASKFVPSKESD-SFLKFFKNVTSRDRKSDKASSE-IDKSGIVYSPRNMIN 404
Query: 421 TLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQN 480
+ + E++ E P V E S + K + S + + + S L+ +
Sbjct: 405 SSSHLEIKEEKPFTIVSKEDSFLKAERKLQKIKESPMIKKSVTRTNERIIKTSEKILNNS 464
Query: 481 KPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSI------------LNFFKSG-----D 523
N +DS + +K Q +++ LKDK S + +N +K+G D
Sbjct: 465 LNMNSEDSPISKRVVKLVQVCNERDKLKDKRLSDVKINKNDFQDSFFMNIYKTGKQEYPD 524
Query: 524 LSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERLDNSTGD-----CLSESNQNQVN 578
GN D + E + KQ ++ E+ NS D C+ E + + +
Sbjct: 525 NESMDGNIDVKQLEY-----------DGKQSSV-DEKSANSIDDYNSNLCIQEDAREKPS 572
Query: 579 IPKERLAEAATTSTSTDRCGSDQIQQRSESWKLR-----IEEIDPSVIDELPKEIQDEIQ 633
+ + + S + + Q S +LR +++IDP ++ LP ++Q+E +
Sbjct: 573 TSHAYIHVSNNDANSMKKSNKETSVQEP-SVRLREIFPNLDDIDPDILSLLPTDLQEEAR 631
Query: 634 AWLR 637
+ +
Sbjct: 632 LYTK 635
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 159/295 (53%), Gaps = 26/295 (8%)
Query: 107 VKEWLCRCDADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
++EWL D+ D L+ G +IV E+R+ V K T F CSAGI+HNKMLAKLA G+N
Sbjct: 30 LQEWLASLSFDNLNCPDLQLSMGAVIVEEMRVAVEKATGFRCSAGISHNKMLAKLACGLN 89
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP +QT V SV L +P+ ++ LGGKLG ++ + LGV +G + +FSE +LQ +
Sbjct: 90 KPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGQVTQFSEMELQTHF 149
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
G TG+WL+++ RGI E V+ R LP+S G K+FPG AL T VQHWL QL EL
Sbjct: 150 GDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELES 209
Query: 284 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAG 342
RL D QN R+A L + D+R S+ C + RY KI D F L Q
Sbjct: 210 RLIKDRSQNHRVAKQLMV----VIRMQGDTRL---SRFCAVTRYDAQKIFSDAFALIQ-- 260
Query: 343 LREFLGSFGVKTQGSHYSGWRITALSV--SASKI-VPVL--SGTCSIMKYFNGPD 392
G+H + W +SV +ASK P +G S + PD
Sbjct: 261 --------NCNMAGTHQAAWSPPLISVHLAASKFSAPTFLSAGIASFLTSDTSPD 307
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 15/236 (6%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 62
MR DEAKE+CP I + +VP RGKA+LS YR+A EV+ +L +C ERAS+DE Y+
Sbjct: 58 GGMRADEAKELCPDIHVFRVPEKRGKANLSRYRDACVEVMEVLCTFSKCVERASVDEAYI 117
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND---------SKATVKEWLCR 113
DLTD + + E +D + + ++G + K+ ND + V +WL
Sbjct: 118 DLTDEIDKKMEEIG--DVDVSIDMLPNTFVVGWDGKENNDPNEEPPLESQTSGVFQWLNN 175
Query: 114 CDA-DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
C + +H K LA G +IV E+R V ++TEF CSAG++HNK+LAKLA G+NKP +QT +P
Sbjct: 176 CHSIEH--KRLAIGAVIVEEMRKAVYQKTEFRCSAGVSHNKILAKLACGINKPNKQTVLP 233
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
F SV+ L +P+ K++ LGGKLG LQ+ELG+ +GD+ KF+E +LQ G TG
Sbjct: 234 FESVEKLFKLIPVNKVRHLGGKLGQQLQDELGMQYMGDICKFTEKELQIKLGDKTG 289
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 202/414 (48%), Gaps = 38/414 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM------------LAKLA 159
D+ D L G +IV E+R + +ET F CSAGI+HNK+ A +
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKIDNLTSPDLQLTVGAVIV 238
Query: 160 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 219
M ++ T + S I + LGGKLG S+ LG+ +G+L +F+E +L
Sbjct: 239 EEMGAAIERETDIYDVTYQFFVSFVISR--SLGGKLGASVIEILGIEYMGELTQFTESQL 296
Query: 220 QESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCE 279
Q +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +
Sbjct: 297 QSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQ 356
Query: 280 ELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNL 338
EL ERL D N R+A L + D R + C L RY K+ D F +
Sbjct: 357 ELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTV 412
Query: 339 FQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
+ + G++T+ S +T L + A+K +C+ + F D
Sbjct: 413 IKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 457
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 185/371 (49%), Gaps = 65/371 (17%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG----RCERASI 57
V M+ +A++VCP++ LVQVP GKAD+S YR+AG VV++L R G E+ASI
Sbjct: 113 VKRGMKAGDARKVCPELSLVQVPTRNGKADISFYRHAGERVVAVLERAGGALTTVEKASI 172
Query: 58 DEVYLDLTDAAEAMLA---------------------------------ETPPESLDEVD 84
DEVY+D+T AA A+L+ + PP + D
Sbjct: 173 DEVYVDVTRAAHALLSSLGSHNSESGGDQPQQHQQQDEDGKGASAEEGSKAPPAASPMED 232
Query: 85 EEALK--------------------SHILGLESKDGNDSK----ATVKEWLCRC-DADHR 119
E K +H+ GL D + SK A W R +A R
Sbjct: 233 GEVSKKRWEDIGEGGWTAVLSATATTHVAGL--SDDHASKEQQLADGVSWWARTQEAFTR 290
Query: 120 DK-LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
D+ LL+CG +V+ LR V E ++C+AG+AHNK+LAKL S M+KP QT +P V+
Sbjct: 291 DQELLSCGAAVVSRLRAAVRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLDKVEV 350
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
+ +LP+++++ GGK G + +LGV+T G++ +LQ G G W + I
Sbjct: 351 VFHTLPVERVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAI 410
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 298
+ V AR PKS G K+FPG L + + ++ WL++L +EL RL E +
Sbjct: 411 CRDPVNARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSK 470
Query: 299 LTLHASAFKSS 309
LT+ +A + +
Sbjct: 471 LTVSFAALQQA 481
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 174/316 (55%), Gaps = 23/316 (7%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILA---RKGRCERASIDEV 60
M ++AK +CP++ + VP KADL+ YRNA +EV+ +L + ERASIDE
Sbjct: 64 MFAEQAKALCPELTVCYVPSGEHSDKADLTRYRNASAEVLDVLNGFDSRIIVERASIDEA 123
Query: 61 YLDLTDAAEAML-AETPPE----SLDEVDEEALKSHILGLESKDGN------DSKATVKE 109
YLDL++ + ++ +ETP SLD L + G + K N D +A ++E
Sbjct: 124 YLDLSELVDYIVESETPSLKYSCSLDMFPTTHLAN---GNDIKASNETIWKYDREANLRE 180
Query: 110 WLCRCDADHRDKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ 168
W+ R L LA IV +R ++ ++T+F+CSAGI NKM+AKL +KP QQ
Sbjct: 181 WIIEACVQQRQALRLAVAAEIVERIRAEIKEKTQFSCSAGIGSNKMIAKLICSRHKPGQQ 240
Query: 169 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
T +P + + S I ++ LGGKLG +L N + T+ +L S +L E +
Sbjct: 241 TIIPDEFIAEIFRSTRILSIRNLGGKLGHALMNAFSIETMSELCGISMQQLSEHFSAQ-A 299
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
W++NIARGI E V+AR S K+FPG AL + + VQ WL+ L +EL++RL D
Sbjct: 300 KWIYNIARGIDDEPVRARDKQSSIAVSKNFPGSSALTSTSEVQTWLDGLVKELAKRLIDD 359
Query: 289 LEQNKRIAHTLTLHAS 304
+NKR A TLH S
Sbjct: 360 QIKNKRTA--CTLHVS 373
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 147/236 (62%), Gaps = 15/236 (6%)
Query: 5 SMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDL 64
+M D+A+++CP +++ +VP A GKADL+ YR A EV+ +++R ERASIDE Y+DL
Sbjct: 62 NMFADDARKLCPDLQVARVPEAHGKADLTHYREASVEVIEVMSRFAVIERASIDEAYMDL 121
Query: 65 TDAAEAMLAETPPESLDEVDEEALK-SHILGLESKDGN-------DSKATVKEWL----C 112
T + + L T S+ ++ + LK +HI G ++ N A +++WL
Sbjct: 122 TASVQERLKNT---SVQDITAQQLKNTHIQGFPTQQENTHLDRDAQRAAGLQQWLDLLSS 178
Query: 113 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
++ D LA G LIV ++R V + T F CSAGI+HNK+LAKLA G+NKP +QT +P
Sbjct: 179 STESSPADLRLAVGALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLP 238
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
SSV L +LPI K++ LGGKLG+S+ L V +GDL +FS +L++ +G TG
Sbjct: 239 LSSVPQLFSTLPISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTG 294
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 182/374 (48%), Gaps = 80/374 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRG++A ++ + L +VP RGKADL+ YR+AG+EV+S+L + G +RASIDE
Sbjct: 60 VKRGMRGEQALKLAKDLHLFRVPEQRGKADLTRYRDAGAEVLSVLCQFGAVVQRASIDEA 119
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA-TVKEWLCR-CDADH 118
YLDLT A P+SL +H++G + G S+ V EWL D
Sbjct: 120 YLDLTPVVTAQATFPSPDSLPS-------THVVGYPEERGVRSREEAVAEWLSTIVDPGG 172
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK------------------------- 153
D LLA G +V +R VL++T F CSAG+AHNK
Sbjct: 173 GDSLLARGCALVERIRAAVLEQTGFDCSAGVAHNKVLAKLVCGLHKPRQQTVLPHSAVPT 232
Query: 154 ------MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 207
+LAKL G++KP QQT +P S+V L +LP+ K++ LGGKLG ++ +L V
Sbjct: 233 LFATLPVLAKLVCGLHKPRQQTVLPHSAVPTLFATLPVHKLRNLGGKLGEDVREKLQV-- 290
Query: 208 VGDLLKFSEDKLQES-YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKT 266
S+D L S +G TG WL+ +ARG+ E V R LP+S G GK+F G AL +
Sbjct: 291 -------SQDYLCLSVFGHRTGQWLYKLARGVDDEPVTCRKLPQSIGCGKNFTGSSALHS 343
Query: 267 VASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-R 325
++N R A LT+ + + SR SCP+
Sbjct: 344 A----------------------DKNDRTAQLLTVGVTRSGHQGAISR------SCPMVA 375
Query: 326 YGTAKIQEDTFNLF 339
Y +I +D +
Sbjct: 376 YCATRIAQDALAVL 389
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 148/230 (64%), Gaps = 11/230 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V SMRGDEAKE CP I LV VP RGKADLS+YR A EV ++ + C +RASIDE
Sbjct: 61 VTRSMRGDEAKEKCPDIVLVSVPTIRGKADLSNYREASDEVAAVFSEFCECVQRASIDEA 120
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILG---LESKDGNDSKATVKEWLCRCD-- 115
YLDL+ A + +AE E++D D + ++ILG L++KD + EW+ +
Sbjct: 121 YLDLSKAVDDYIAEHK-ENIDVRDLPS--TYILGHCDLKNKDEEKRLEGLAEWIRITENE 177
Query: 116 --ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
++ D LA G +I+ ++R ++L++T F CSAGIAHNK+LAKL +G++KP +QT +P
Sbjct: 178 KMVENADYKLAIGGIIMEKMRSKILEKTSFHCSAGIAHNKILAKLTAGLHKPKKQTILPH 237
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
+SV L + LPI+K+K LGGKLG + +L V + +L KFS LQ+ +
Sbjct: 238 NSVPELYEKLPIRKVKSLGGKLGKHVSEKLSVNYMSELYKFSLQDLQQEF 287
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 146/273 (53%), Gaps = 6/273 (2%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V MRGDEAKE CP I LV VP RGKADL+ +R AG+EV+ ILA C ERAS+DE
Sbjct: 60 VTRQMRGDEAKEKCPDIHLVPVPENRGKADLTQFREAGAEVIEILAGFADCLERASVDEA 119
Query: 61 YLDLT-----DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD 115
Y+DLT D + E + + + + + GL K+W
Sbjct: 120 YMDLTELINRDFCNYDIEEVALHTFQNTNIVGIDNMVTGLTDTQDILKCDLYKQWHEVLH 179
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
+ LA G I ++R +V ++ FTCSAGI NKMLAK+ +G +KP QQT V +
Sbjct: 180 RSEENLKLAIGATIADKMRKEVKEKLGFTCSAGIGQNKMLAKIVAGFHKPDQQTLVLPDN 239
Query: 176 VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIA 235
V + S ++K++ LGGKLG L V + DLLK S L++ G +G ++ +
Sbjct: 240 VAEMFQSTKMRKIRSLGGKLGKQLAETFNVEYMSDLLKISSHDLEKVIGKKSGDLVYGLC 299
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVA 268
RGI E V+ R LPKS G K+F G L T A
Sbjct: 300 RGIDYEPVRPRQLPKSVGCSKNFNGKLTLSTTA 332
>gi|302822400|ref|XP_002992858.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
gi|300139306|gb|EFJ06049.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
Length = 808
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 125/209 (59%), Gaps = 27/209 (12%)
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
+LGGKLG L+ ELGV TVG LL+FSE KLQ+ YG NTGTWLWN +RGI+G+EVQ R LP
Sbjct: 8 KLGGKLGQELEGELGVKTVGGLLQFSEVKLQDMYGPNTGTWLWNTSRGINGDEVQDRTLP 67
Query: 250 KSHGSGKSFPGPRALKTVAS--------VQHWLNQLCEELSERLCSDLEQNKRIA-HTLT 300
KSH SGK+FPGP+ALKT+ + V +WL +L E L RL DL QN R A H LT
Sbjct: 68 KSHSSGKTFPGPQALKTLETLRATFLLQVVYWLKELAETLQLRLDEDLSQNNRTAQHLLT 127
Query: 301 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 360
+HAS S + KF SKS PLRYG KI AG K Q S
Sbjct: 128 IHASCHIESRATEAPKFSSKSRPLRYGVDKI--------SAG----------KEQSEITS 169
Query: 361 GWRITALSVSASKIVPVLSGTCSIMKYFN 389
W +T LS++AS I+ G I +Y +
Sbjct: 170 SWAVTGLSLTASNIMAKPMGVNPITQYVD 198
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 609 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 659
W+ + EEIDPSV ELP EIQ E+Q R + R F+ D+ K
Sbjct: 267 WEYKQEEIDPSVFAELPSEIQQELQVTHRRNLHKERTVASFSDQDHLKHEK 317
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 171/318 (53%), Gaps = 28/318 (8%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILAR---KGRCERASIDEV 60
M G++AK +CP + L VPV KAD++ YR+A +EV +L + ERAS+DE
Sbjct: 63 MFGEQAKALCPDLTLCYVPVGEHIDKADITRYRDASAEVFKVLHEFDSRIVVERASVDEA 122
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEAL----KSHILGLESKDGNDSKATVKEW-LCRCD 115
YLDL+ + + T P S+ ++ A+ +H+ + D N+ K + +W R +
Sbjct: 123 YLDLSALVQHIFETTNP-SVKYMEPNAVDLFPTTHVA--DGADLNEDK--IPDWKYDRVE 177
Query: 116 ADH---------RDKL---LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
+ H +D+ L G ++ ++R + K T F CSAGI +KM+AKL +
Sbjct: 178 SLHSFISEAYETQDEYKLKLIIGADVIEQIRSAIKKNTAFNCSAGIGSSKMIAKLVCSRH 237
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP QQT V ++ + + PI +++ LGGKLG +L + V T+G+L + S L E +
Sbjct: 238 KPGQQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALVEKFDVKTMGELSQISMSDLSECF 297
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
W++NIARGI E+V AR S K+FPGP ALKT V+ WL L +EL +
Sbjct: 298 PAQ-AKWIYNIARGIDEEKVTARDKQSSVAVSKNFPGPNALKTDGDVKFWLEGLIKELVK 356
Query: 284 RLCSDLEQNKRIAHTLTL 301
RL D N R A TL +
Sbjct: 357 RLIDDQITNIRTASTLHI 374
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 7/303 (2%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M DE + P++ + +VP RGKA+L+ YR+A SEV+ ++ ERASIDE Y+DL
Sbjct: 20 MFSDEIRVQHPEVIIFKVPEKRGKAELTRYRDASSEVIQCISEFTSDIERASIDEAYVDL 79
Query: 65 TDAAE--AMLAETP-PESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD- 120
T + + + P PES V+ + + LE + N + +W+ D++ +
Sbjct: 80 TVLIQDHNLSSLHPNPESYVLVNSDIAEES--KLELTETNCVSLSGVDWIKLLDSNFAEG 137
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ LA +V +R V +T F CSAGI NK +AKLA +NKP +QT +P S+ LL
Sbjct: 138 RRLAVASELVYRIRQAVFTKTGFKCSAGIGPNKSIAKLACSLNKPNKQTIIPQESIPILL 197
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++ I K++ LGGKLG+++ +L + T+G L L + +G T WL +++ GI
Sbjct: 198 ENTHINKIRNLGGKLGSTVVKKLKIETLGQLSSIPLSVLTKEFGEKTSKWLHDLSHGIDH 257
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
E V R LPKS G K+F G L + ++ WL L EE+ ERL D Q++R L
Sbjct: 258 EVVTTRSLPKSVGCSKNFLGRATLTSSEQIKRWLLCLAEEIFERLDVDYHQHQRYPTRLI 317
Query: 301 LHA 303
L+A
Sbjct: 318 LYA 320
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 167/315 (53%), Gaps = 22/315 (6%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEV 60
M ++AK +CP + L VPV KAD++ YR+A +EV +L ERAS+DE
Sbjct: 63 MFPEQAKALCPGLTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSQIIVERASVDEA 122
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEAL----KSHIL-GLESKDGN------DSKATVKE 109
YLDL+ E + T P S+ +A+ +H+ G + +G D ++
Sbjct: 123 YLDLSALVEHVFETTDP-SIRYGKSDAMDLFPTTHVANGTDVNEGKIPDWKYDRIGSLHS 181
Query: 110 WL---CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 166
++ C+ D++ KL+ G +V ++R + + T F CSAGI +KM+AKL +KP
Sbjct: 182 FISETCKTKDDYKLKLI-IGADLVEQIRRNIKESTAFNCSAGIGSSKMIAKLVCSRHKPG 240
Query: 167 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 226
QQT V ++ + + PI +++ LGGKLG +L + + T+G+L K S L E Y
Sbjct: 241 QQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALMEKFDIKTMGELSKISMSHLSE-YFPA 299
Query: 227 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
W++NIA GI E+V AR S K+FPG ALKT V+ WL L +EL +RL
Sbjct: 300 QAKWVYNIAHGIDEEKVTARDKQSSVAVSKNFPGVNALKTDVDVKFWLEGLVKELVKRLI 359
Query: 287 SDLEQNKRIAHTLTL 301
D N R A TL +
Sbjct: 360 DDQIANIRTASTLHI 374
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 158/321 (49%), Gaps = 37/321 (11%)
Query: 7 RGDE---AKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSIL- 46
RGD AK+ CPQI LV V K L YR A +++I
Sbjct: 59 RGDRTTAAKQKCPQITLVHVETIGADDELDDAGTRHDKGACKVSLERYRTASFAIMAIFQ 118
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 106
A R ERASIDE YLDLT+ A + E + +V + S L+ G+ T
Sbjct: 119 AHCRRVERASIDEAYLDLTEEAAKLCQEVEAGNARDVAD----SPETDLQGTAGHRVDPT 174
Query: 107 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 166
+ D+ L G + +R+ V +E FT SAGIA NK+LAKLAS +NKP
Sbjct: 175 ----------NAFDRALLAGARLTAAMRLAVEQELGFTVSAGIASNKVLAKLASSINKPN 224
Query: 167 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 226
+QT VP + +LD++P++ ++ LGGKLG ++ + DL +FS+ L ++G
Sbjct: 225 KQTVVPAGASSDMLDTVPLRSVRGLGGKLGETVVSWSKAEKASDLKRFSQQDLVGNFGTK 284
Query: 227 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
TG WLW RG+ E V L PKS KSF ++ SV +W+ LC ELS+R+
Sbjct: 285 TGEWLWRACRGMDDEPVAPNLKPKSLSVCKSFT---PVRDEESVLNWMRLLCTELSQRIA 341
Query: 287 SDLEQNKRIAHTLTLHASAFK 307
D E R A LTL + K
Sbjct: 342 VDREAWSRRATKLTLQMISLK 362
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 167/311 (53%), Gaps = 13/311 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERAS 56
V M EAK CPQI + VP+ KAD+ YR+A +EV +L E+AS
Sbjct: 56 VKRGMTVAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDSQIIIEKAS 115
Query: 57 IDEVYLDLTDAAEAMLAETPP-ESLDEVDEEALK----SHILGLESKDGNDS--KATVKE 109
+DE +LDL+ L E E L+E + A+ +H+ E N+ + + E
Sbjct: 116 VDEAFLDLSAYTNQKLQELRENEGLEEFLQAAITYLPTTHLATGEDVKENEHLREDVLLE 175
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
++ + LL + V ++R Q+ +ET+F CSAG+ +NKM+AKL +KP QQT
Sbjct: 176 YIENARNCTENLLLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQT 235
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P+ V+ +L PI ++ GGK+G +Q L +T +G+LL+ +L E++ N
Sbjct: 236 LIPWFYVREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFP-NQHE 294
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
+L ++A G E V+ R S K+FPG ++++V ++ WL+ L +EL++RL +D
Sbjct: 295 YLRSVAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQ 354
Query: 290 EQNKRIAHTLT 300
+NKR A L
Sbjct: 355 AENKRTAENLV 365
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 149/275 (54%), Gaps = 14/275 (5%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 43 DPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 102
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G G+WL+ +
Sbjct: 103 SVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAM 162
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL D N R
Sbjct: 163 CRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDR 222
Query: 295 IAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVK 353
+A L + D R + C L RY K+ +D F A +R + G++
Sbjct: 223 VATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQ 273
Query: 354 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
T+ S +T L + A+K C+ + F
Sbjct: 274 TEWSP----PLTMLFLCATKFSAAAPPACTDITAF 304
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 11/309 (3%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERAS 56
V M +AK CPQI + VP+ KAD+ YR+A +EV +L E+AS
Sbjct: 56 VKRGMSVADAKLKCPQINVCHVPIGEYADKADIQKYRDASAEVFRVLNNFDTSIIVEKAS 115
Query: 57 IDEVYLDLTDAAEAMLAETPPE-SLDEVDE-EALKSHILGL-ESKDGNDS--KATVKEWL 111
+DE +LDLT L E +L+E E L + L E ND + + +++
Sbjct: 116 VDEAFLDLTTYTNERLEELRENGNLEEFTAIEHLPTTFLATGEDVKENDHLREQMLTDFI 175
Query: 112 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
+ LL V +R ++ +ET+F CSAG+ +NKM+AKL +KP QQT +
Sbjct: 176 TGSLHSTENILLLIAACTVEAIRDRIHEETQFYCSAGVGNNKMMAKLVCARHKPRQQTLI 235
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
P+ V+ +L + PI ++ GGKLG +Q L +T +G++L+ L ES+ + +L
Sbjct: 236 PWVYVREILRTTPIGDVRGFGGKLGNRVQELLNITLMGEILEIDYSLLVESFP-DQHEYL 294
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
IA+G+ E V+ R S K+FPG A++T+ ++ WL+ L +EL++RL +D +
Sbjct: 295 IAIAQGMCDEPVRPRKESSSIAVSKNFPGKLAIRTIQELRKWLDGLTKELAKRLWTDQNE 354
Query: 292 NKRIAHTLT 300
NKR A L
Sbjct: 355 NKRTAENLV 363
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 147/301 (48%), Gaps = 46/301 (15%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILAR---KGRCERASIDEV 60
M ++AK +C ++ L VPV KAD++ YR+A +EV +L + ERAS+DE
Sbjct: 63 MFPEQAKTLCSELTLCYVPVGEHVDKADITRYRDASAEVFKVLHEFNSRIIVERASVDEA 122
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLDLT E + T P + L+
Sbjct: 123 YLDLTALVEHIYETTDPS--------------IKLK------------------------ 144
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L G +V ++R + K T F CSAGI +KM+AKL +KP QQT V ++ +
Sbjct: 145 --LIIGADLVEQIRRNIKKSTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVF 202
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ PI +++ LGGKLG +L + + T+G+L + S L E Y W++NIA GI
Sbjct: 203 EYTPINEVRNLGGKLGRALMEKFNIKTMGELSEISMSHLSE-YFPAQAKWIYNIAHGIDD 261
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
E+V AR S K+FPG ALKT V+ WL L +EL +RL D N R A TL
Sbjct: 262 EKVTARDKQSSVAVSKNFPGANALKTDVDVKFWLEGLVKELVKRLIDDQIANIRTASTLH 321
Query: 301 L 301
+
Sbjct: 322 I 322
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 160/311 (51%), Gaps = 13/311 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERAS 56
V M +AK+ CPQI + VP+ KAD+ YR+A +EV +L E+AS
Sbjct: 56 VKRGMTVSDAKQKCPQITICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSSIIVEKAS 115
Query: 57 IDEVYLDLTDAAEAMLAETPPE-SLDEVDEEALK----SHILGLESKDGNDS--KATVKE 109
+DE +LDL+ L E +L+E E AL +H+ + ND + + E
Sbjct: 116 VDEAFLDLSAYTAQKLDEMRENGTLEEFVETALSQLPSTHLANGQDFAENDHLREQFLSE 175
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
++ + LL V +R ++ ET+F CSAG+ +NKM+AKL +KP QQT
Sbjct: 176 FIQNSTYSDENLLLLIAACTVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQT 235
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P+ V+ +L PI ++ GGK G +Q L ++ +G++L+ L E++ +
Sbjct: 236 LIPWKYVREILRLTPIGDVRGFGGKFGNRVQEMLNISLMGEILEIEWHLLIEAFP-DQHE 294
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
+L +A G+ E V+ R S K+FPG A++T ++ W+ L +EL++RL D
Sbjct: 295 YLRAVAEGLDDEPVRPRRESSSIAVSKNFPGKSAIRTTREMRKWVEGLVKELAKRLVVDQ 354
Query: 290 EQNKRIAHTLT 300
+NKR A L
Sbjct: 355 VENKRTAENLV 365
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 136/256 (53%), Gaps = 15/256 (5%)
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
+KLLA G I LR + E +T SAGIA NKMLAKL SGMNKPA QT + + L
Sbjct: 257 EKLLAAGAYICHNLRKACVDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEAL 316
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LPI +++ LG K G L L V T+G+L + KL+E G W+ ++ G
Sbjct: 317 LAELPIDRIRGLGAKFGRELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQD 376
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+ V+ R +PKS G+GK+F G A++++ S + WL +L EL++R D ++ R L
Sbjct: 377 DDPVKEREMPKSIGTGKTFRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLL 436
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 359
TL S+ +++S S+ CP+R G +I +D L + S
Sbjct: 437 TLGLSSPDELNTNS--GHCSRRCPMRLGADEITQDALAL-------------ISKWSSGR 481
Query: 360 SGWRITALSVSASKIV 375
S W IT +SVSAS V
Sbjct: 482 SDWSITGMSVSASNFV 497
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 2 VVSSMRGDEAKEVCPQ-IELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEV 60
V +MR +A+ +C +VQVP R KADL++YR AG+ V IL+R G ERASIDE
Sbjct: 78 VKRNMRAIDARRLCGDGAVVVQVPTRRSKADLTAYRRAGAAVARILSRGGVMERASIDEA 137
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND--SKATVK 108
YLDLT A LAET EV A K+H+ G G SKA+++
Sbjct: 138 YLDLTANARRTLAET---EWREVLATARKAHVAGAAPIGGKGFVSKASLR 184
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 17/313 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERAS 56
V M +AK CP + + VP+ KAD+ YR+A +EV +L E+AS
Sbjct: 56 VKRGMSVADAKIKCPHLNICHVPIGEYADKADIQKYRDASAEVFRVLNNFDSTIIVEKAS 115
Query: 57 IDEVYLDLTDAAEAMLAETPPE-SLDEVDEEAL----KSHILGLESKDGNDSKATVKEWL 111
+DE +LDLT L E L+E+ + +L +H+ E D +++ +E+L
Sbjct: 116 VDEAFLDLTAYTNQKLEEIRENGQLEEIVKTSLDQLPSTHLANGE--DVKENEHLREEFL 173
Query: 112 CRCDADHRDK----LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
R+ LL + V +R ++ ET+F CSAG+ +NKM+AKL +KP Q
Sbjct: 174 SDFIESSRNSTENLLLLIAAITVETIRKRIRDETQFYCSAGVGNNKMMAKLVCARHKPRQ 233
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT +P+ + + +L + PI ++ GGK+G +Q L +T +G++L+ L E++ +
Sbjct: 234 QTLIPWRNCREILRTTPIGDVRGFGGKMGNRIQEMLNITLMGEILELDIALLIETFP-DQ 292
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
+L +A G+ E V+ R S K+FPG A++T ++ W+ L +EL++RL +
Sbjct: 293 HEYLRAVAEGLDDEPVRPRKESSSIAVSKNFPGKMAIRTTGELKKWVGGLVKELAKRLGT 352
Query: 288 DLEQNKRIAHTLT 300
D +NKR A L
Sbjct: 353 DQAENKRTAENLV 365
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 160/340 (47%), Gaps = 30/340 (8%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARG------------KADLSSYRNAGSEVVSIL--- 46
+ MR EA+ +CP+++ V V G KA L YR A E++++L
Sbjct: 28 ITRHMRVHEARALCPELQCVHVETIGGDELVDTKDRTKQKACLERYRKACIEILAVLHKA 87
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAE-TPPESLDEVDEEALKSHI--LGLESKDGNDS 103
A + E+ASIDEVY+D+T E L E +S E + +H G D
Sbjct: 88 APQAVIEKASIDEVYMDVTTMVERELRERAQADSCREAETGEGGAHDWEAGGSPVDAFSW 147
Query: 104 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
V ++ L+ G I LR V + FTCSAGIA NK+LAK+AS MN
Sbjct: 148 GGIVLGGGPLDVGSEFERRLSIGANIACRLRGAVRDQLGFTCSAGIAANKLLAKVASAMN 207
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP QQT VP +V ++ LP+KK++ GGKLG L +G T G + +L +
Sbjct: 208 KPNQQTIVPPRAVDEMMRDLPLKKLRNFGGKLGAELA-AMGCVTAGQVSALPHGQLTARF 266
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
G + RG S E VQ + L KS + KSF A A + WL L +ELS
Sbjct: 267 GEERAAGIARAVRGYSDEPVQVKELAKSMLAAKSF---NATSAPAELDRWLRILADELSH 323
Query: 284 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCP 323
RL D + R TL+L +++ S+ D SK CP
Sbjct: 324 RLTEDGLTHSRAPRTLSL---SYRGSNGDR-----SKCCP 355
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 18/227 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V MRGDEAK+ CP+IEL QVP RGKADL+ YR AG EV +L + ERASIDE
Sbjct: 41 VTRHMRGDEAKQHCPEIELPQVPNVRGKADLTRYREAGKEVAEVLKSFTPLLERASIDEA 100
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES-------------KDGNDSKATV 107
YLD+T+ + + + ++ + +G +S +G + T
Sbjct: 101 YLDITERVLNRIRDMNEGRFQLLPDKLANTFAVGYDSIGDFVKKLSNTFDNNGTSEQGTP 160
Query: 108 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
++ + D L G IV E+R V ++T + CSAG+AHNK+LAKL +G +KP +
Sbjct: 161 EQL----EYKKSDIKLLVGASIVNEIRAAVKEKTGYECSAGVAHNKILAKLTAGFHKPNK 216
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
QT +P S+ L ++LP+KK+K LGGKLG + L + + +L++F
Sbjct: 217 QTILPIESIAKLYETLPVKKVKGLGGKLGDQVCELLKIKFMSELVQF 263
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 179/394 (45%), Gaps = 63/394 (15%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 68
+EA+++ P + V V V KA L YR A ++++++ + G ERASIDE Y D+T A
Sbjct: 59 EEARKILPDLACVHVDVINQKASLEPYRQASRDIMAVMEQYGTFERASIDEAYFDVTQEA 118
Query: 69 EAMLAETPPESL-------------------DEVDEEALK-----SHILGLESKDGNDSK 104
+ A+TP L D E+ L+ +H++G DG D
Sbjct: 119 QQREAQTPATQLCRHYADLTLLQRGAVELRADLTLEDWLRVAMASTHVMGYAPDDGPDDH 178
Query: 105 ATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
WL + + D LL G +I E+R +V +ET + CSAGIAHNK+ AK+ SG NK
Sbjct: 179 LGFG-WLPKSE---EDALLFHGAMIAAEIRFRVFEETGYVCSAGIAHNKLFAKMGSGFNK 234
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P+QQT P +S ++ +Q G +L V D L S +L+ +
Sbjct: 235 PSQQTLYPRASSGD-------QQYRQAGERL-----------LVADCLGLSLAELRTEFS 276
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
T WL + RG V ++ P+S KS G +A + + V++W+N LC L+ R
Sbjct: 277 SETAAWLHGLLRGHDSRAVASKGPPRSLLEAKSITG-QATQLIV-VEYWINNLCHGLARR 334
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC-PLRYGTAKIQEDTFNLFQAGL 343
+ D ++ R L FK +D S+SC P+ + I D QA
Sbjct: 335 ILDDARRHNRWPKNYVLQ---FKRR-ADRTYFGASRSCGPVPH----ITRDMVRHAQANP 386
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 377
E + Q G ++ ++ A K VP+
Sbjct: 387 EEG------RVQADITEGRELSGVAAGARKDVPL 414
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 182/409 (44%), Gaps = 49/409 (11%)
Query: 10 EAKEVCPQIELVQV-------PVA---------RGKADLSSYRNAGSEVVSILARKGRC- 52
EAK+ CP + LV V PV+ K L YR +++ I C
Sbjct: 94 EAKKKCPHLILVHVATYMDSQPVSGYYDNPRPETHKVSLDPYRRESQKILKIFG--DLCP 151
Query: 53 --ERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALK----SHILGLESKDG 100
E+ASIDE +LD T ++ E PP++LDE S + L D
Sbjct: 152 LIEKASIDEAFLDFTAPVRQLMLERYPILAQPPDNLDEPLPPPPTTLPWSELGNLIPVDP 211
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
+ T E + +D LA G ++ + R +V + +TCSAGIA NKML+KL S
Sbjct: 212 DAPPETDDEPIT-----WQDVALALGAEMMEKCRKEVYTQLGYTCSAGIAKNKMLSKLCS 266
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP QT + ++V L L +K++ LGGKLG SL NE +TVGDL S +LQ
Sbjct: 267 AWKKPNAQTVLRDTAVHNFLKPLKFQKIRFLGGKLGDSLANEYESSTVGDLWSVSLQELQ 326
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G +G W W I RGI EVQ + KS S K+F A+ A +WL E
Sbjct: 327 RKLGNESGMWCWEIIRGIDLTEVQPKAATKSMLSSKNFKP--AINKWADGAYWLRVSATE 384
Query: 281 LSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
L+ RL E I T+TL+ F+ + SR SK C Y + F +
Sbjct: 385 LAARLNEQRESVPGIWPKTITLN---FRDINYVSR----SKQCAFPYSNNLSADYVFKIT 437
Query: 340 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ L+EF GS T+L ++ + + V SG I +F
Sbjct: 438 ERLLKEFQNEGSKPDDGSMTPA---TSLGLAFNGLERVASGQAGIQDFF 483
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 20/201 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP +++ +V + GKADL+ YR A EV+ +++R ERASIDE Y
Sbjct: 59 VTRNMWVDDAKKLCPDLQVARVRESHGKADLTFYREASVEVIEVMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC------D 115
+DLT A + + L +++ + +H+L + G V++WL +
Sbjct: 119 MDLTAAVQ--------QRLKNLNDSPIDAHLLKEQRSRG------VQQWLAMLPLPAVGE 164
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
+ L G LIV E+R V K T F CSAGI+HNK+LAKLA G+NKP +QT +P S
Sbjct: 165 QSSAELQLTVGALIVEEMRAAVEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDS 224
Query: 176 VKGLLDSLPIKKMKQLGGKLG 196
V+ L SLP+ K++ LGGKLG
Sbjct: 225 VRDLFSSLPVGKIRNLGGKLG 245
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 192/424 (45%), Gaps = 50/424 (11%)
Query: 10 EAKEVCPQIELVQVPVAR-----------------GKADLSSYRNAGSEVVSILAR---K 49
EAK+ CP + V V + K L YR G++V+ +
Sbjct: 74 EAKKKCPNLVPVHVATYKEGVEEPGYWNEKPSPDSHKVSLEPYRREGAKVLKCMQEIFVG 133
Query: 50 GRCERASIDEVYLDLTDAAE-------AMLAETPPE-SLDEVDEE------ALKSHILGL 95
E+ASIDE Y+DLT+ L + PP+ +LD+V E A +++
Sbjct: 134 CEIEKASIDEQYIDLTELVRNKILERYPFLKQLPPDKTLDDVLPEPPIISFADVGNVIPT 193
Query: 96 ESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 155
S+ G+D + E + D + G +V E R + ++ +TCSAGI+HNK+L
Sbjct: 194 SSEKGSDGEIIADEEM---QTTWEDVAIQVGAQLVAEARKIMFEKIGYTCSAGISHNKIL 250
Query: 156 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
AKL S KP QT + +V L + +K++ LGGK G +L TV DL K
Sbjct: 251 AKLCSAYKKPDDQTVLRRDAVDSFLGPMSFQKIRSLGGKFGEALAAHYDAATVSDLWKVP 310
Query: 216 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 275
++Q +G W++N RGI+ +EV+ R++ KS + KS P + TV V+HWL
Sbjct: 311 LGEMQRQFG-EESIWIYNTIRGINSDEVKERVITKSMLASKSLRPP--INTVGEVRHWLK 367
Query: 276 QLCEELSERLCSDL-EQNKRIA--HTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 332
L ELS+RL E+ K+ ++ L + S + FP + +G IQ
Sbjct: 368 ILSSELSQRLKEVRGEEGKKTMWPKSIVLSMNQVYQSSRSHQGAFPYNNS---FGPELIQ 424
Query: 333 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
+ L L+EF+ + H G+ + L++S S + V +G I +
Sbjct: 425 KHAEKL----LKEFVRCDTKEMPDEHKLGYDVNKLALSFSGLATVEAGQRGIEGFLGQMT 480
Query: 393 KFGS 396
K G+
Sbjct: 481 KNGN 484
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 152/338 (44%), Gaps = 60/338 (17%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V M +EAK VCP I+ V V + GKA L YR A ++++I + G CE+A +DE Y
Sbjct: 66 VTRFMNMEEAKRVCPDIQFVHVDIVHGKASLEPYRRASRDIMAIFEQFGVCEKAGMDEAY 125
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T A E P S+ ++ +++K + T K + C+ A H D
Sbjct: 126 LDVTKEA-VRRREQCPTSIQQL-----------MQAKYIVPGEFTFKVF-CKEGATHDDL 172
Query: 122 LLAC------------------------------GVLIVTELRMQVLKETEFTCSAGIAH 151
LL G + ELR+ V + + SAGI+H
Sbjct: 173 LLGSLASSRVIGFAHGLLGRGWKPTSEDDWLLVEGAAVAAELRVAVYERLGYVVSAGISH 232
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT----SLQNELG--- 204
+K++AK+ SG NKP QT +P + + +L LPI ++ QL GK+G +LQ G
Sbjct: 233 SKLMAKVGSGHNKPGHQTIIPHYAARPMLAKLPISRVPQLHGKMGRAVKLALQESRGEHW 292
Query: 205 --------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 256
V D L + + L G TW+ RG V + P+S K
Sbjct: 293 RYQALSSREVLVEDCLGLTLEYLASKLGREAATWVHAFLRGHDTRAVHPKGPPRSLLEAK 352
Query: 257 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
S +A+ T +++HW+ LC L+ER+ D +N R
Sbjct: 353 ST--SKAMTTYPALRHWVGNLCFGLAERILDDHARNNR 388
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 21/306 (6%)
Query: 29 KADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAAEAM---------LAETPPE 78
K L YR A ++++ IL++ G ++ASIDE Y+D+TD + ++E+ E
Sbjct: 119 KVSLDVYRQASNKIMDILSKCGSPVKQASIDEAYVDITDYVNKLIESGYWKNIMSESHSE 178
Query: 79 SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVL 138
D DE+ + S +G + D+ + + + + D L G + LR Q+
Sbjct: 179 CKDPQDEQQVHSD-MGPMVRWNKDTCSAMGDLVTSYGI--FDLQLYLGSRLSASLRKQIF 235
Query: 139 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 198
E +TCS GIAH K+LAKL S +NKP +QT + V + ++ + K+ +GGK G
Sbjct: 236 DELGYTCSTGIAHGKILAKLVSSINKPNKQTVLQIEKVPDFMKTIKLSKINGMGGKFGAE 295
Query: 199 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
+ VT +L +S D+L + G+ GTWL+N RGI +++Q + +S + K+
Sbjct: 296 IMKTFQVTMAHELWVYSADELVKQLGYEHGTWLYNACRGIDFQKIQGQTKSQSMTACKNL 355
Query: 259 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 318
P + + ++WL L EL R+ ++ E N+R L LH F++ + + K
Sbjct: 356 -TPN-IHSTDDARYWLGILASELYTRVNTEFETNQRWPKLLVLH---FRNPNCPADK--- 407
Query: 319 SKSCPL 324
SKSCP
Sbjct: 408 SKSCPF 413
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 151/324 (46%), Gaps = 62/324 (19%)
Query: 9 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSI---LARK 49
DEAK++CP + + V R K L YR ++++I + +
Sbjct: 69 DEAKKMCPHLVVQHVATYRNGEAEAGYWGEVDPRTHKVSLDPYRRESLKILAIFKEMVPR 128
Query: 50 GRCERASIDEVYLDLT-DAAEAMLAETP---------PESLDE----------------- 82
G E+ASIDE +LDLT E +L P PE LD
Sbjct: 129 GEIEKASIDEAFLDLTTQVLERLLERFPYLSQVPPDAPEGLDSALPTAPPVNWQNSGNVF 188
Query: 83 -VDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKET 141
+D E + LG+E DG S+ +W D L G I++ELR +V K
Sbjct: 189 PIDGETDPA--LGIEEPDG--SQEPEGKW--------EDWALCIGAEIMSELRAEVYKRL 236
Query: 142 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 201
+TCSAGIAHNK +AKL S KP QT + ++ L ++ ++ LGGKLG ++
Sbjct: 237 HYTCSAGIAHNKAMAKLCSAWKKPNNQTVLRIAATPAFLRNMDFTDIRFLGGKLGNAIAT 296
Query: 202 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 261
E G TVGD+L D+LQ +G W++NI RGI EV+ R+ KS + K+
Sbjct: 297 EYGAKTVGDMLTVPLDELQRRFG-EESVWVYNIIRGIDHTEVKERVTTKSMLASKN--TR 353
Query: 262 RALKTVASVQHWLNQLCEELSERL 285
A+ T A HW+ L EL+ RL
Sbjct: 354 PAVTTPAQGLHWIQVLSGELNVRL 377
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 117/207 (56%), Gaps = 15/207 (7%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDL 64
MR ++A+ + + VP R KADLS YR AG+EV+ + G ERASIDE Y+DL
Sbjct: 67 MRPNQARALSSDCIIYHVPEVRQKADLSRYRQAGAEVLKVFCSFGAVVERASIDEAYIDL 126
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T L P +L E + LE D W D D LA
Sbjct: 127 TGLVANKLTCVPTAALGNASIEGYEDATSFLEQVD----------W----TEDGGDAYLA 172
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I+ E+R +VL+ET FTCSAGI+HNK++AKLA+G++KP + T VP SSV L ++P
Sbjct: 173 RGAAIMMEMRAKVLQETGFTCSAGISHNKIVAKLAAGLHKPNRLTVVPHSSVALLFTTVP 232
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDL 211
I K++ LGGKLG ++ +L V T+ +L
Sbjct: 233 IGKVRNLGGKLGENITKDLNVQTMAEL 259
>gi|297713023|ref|XP_002833023.1| PREDICTED: DNA polymerase eta, partial [Pongo abelii]
Length = 492
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 126/236 (53%), Gaps = 14/236 (5%)
Query: 154 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 213
+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +
Sbjct: 1 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQ 60
Query: 214 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ W
Sbjct: 61 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 120
Query: 274 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQ 332
L QL +EL ERL D N R+A L + D R + C L RY K+
Sbjct: 121 LLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMS 176
Query: 333 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
D F + + + G++T+ S +T L + A+K +C+ + F
Sbjct: 177 HDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSF 223
>gi|302833114|ref|XP_002948121.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
Length = 1251
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 35/294 (11%)
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
D ++LL G ++ +LR +L+E ++CSAG+AH K++AKL SG++KP QQT V +V
Sbjct: 155 DPHERLLVAGAVVAAQLRSALLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVLARAV 214
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
LL +LP+ K++ LG K G +Q LG+ T+G+L +L+ YG L +A
Sbjct: 215 PTLLRNLPLAKLRSLGPKFGEQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLMRLAA 274
Query: 237 GI-SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
G+ G+ V RL PK+ GK+F G AL+ + V L QL E+SER+ +D + R+
Sbjct: 275 GMDEGDMVSPRLAPKTLSCGKTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRDHGRL 334
Query: 296 AHTLTL--------------------HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQED 334
LTL + + S+SC L R T I E
Sbjct: 335 PTQLTLTLQTGAPGLAGAGAGEAAGGPGAGGGGAGGGGNGSTHSRSCRLARTSTECIAEV 394
Query: 335 TFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
L V+ + SGWRIT LS++ S+ SG ++ ++
Sbjct: 395 ATGL-------------VRKWAAERSGWRITGLSITTSRFDSAPSGPSTLARFL 435
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 178/416 (42%), Gaps = 59/416 (14%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRN----------AGSEVVSILARKGRC--- 52
M DE K +CP I L V R +YR+ A E I +RK
Sbjct: 87 MPVDEVKRLCPSIHLQHVATWREGEASWAYRSDQDKHMSNDKAALEPYRIESRKAFALIE 146
Query: 53 -----------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN 101
E+ASIDE+YLDL+ +L + PE L + + L L
Sbjct: 147 SCLPVTSTVLLEKASIDEMYLDLSTYVHDVLLDRYPELL--ISSRDTEGQYLPLPPATSL 204
Query: 102 D--------SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 153
D +A +W DA + G ++ ELR V + +T SAGIA NK
Sbjct: 205 DWQEDNILGDQAQSLDW----DA----VAMNIGAGVIRELRHTVHSKLHYTASAGIASNK 256
Query: 154 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 213
MLAKL +G KP QT + V L SL KK++ LGG+LGT+++ VTTV DLL
Sbjct: 257 MLAKLGAGCKKPNNQTILRTRDVPEFLSSLKYKKIRGLGGQLGTAVEEAFNVTTVADLLP 316
Query: 214 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
S ++Q G + GTW++N+ RG EV R LP+S S K+F A+ + HW
Sbjct: 317 VSLKQMQTLLGADEGTWIYNVIRGREHSEVSTRKLPQSMLSQKTFTP--AIANIEKASHW 374
Query: 274 LNQLCEELSERLCS-DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 332
L EL +R+ + D +R TL ++ + P R A I
Sbjct: 375 LRMFAAELYDRVVALDTPTLRRRPRTLAVN------------HHINGRFGPTRSRQATIS 422
Query: 333 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
T + A L L S ++ + W AL V S V + + + SI +F
Sbjct: 423 --TGSTMSADLIYELASSKLREISAEAVSWPCAALGVVLSNFVELDTQSLSITTFF 476
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 148/318 (46%), Gaps = 31/318 (9%)
Query: 10 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSIL-ARKGRC 52
+A +VCPQ++LV V R KA L YR +++SI A R
Sbjct: 84 DALKVCPQLKLVHVATWRSGDEHWGYRENPDIVTCKACLDPYRIESKKIMSIFRAACLRV 143
Query: 53 ERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDGNDSKAT 106
E+ASIDE +LDL+ L + PP D ++ L GLE K
Sbjct: 144 EKASIDESFLDLSVMVHERLLKRFPVLILPPPHNDPAEKLPLPPE--GLEIKWARSHLLE 201
Query: 107 VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 166
+ E C D D + IV E+R V KE +TCSAGIA NK+LAKL SG KP
Sbjct: 202 LAE-DCDEQLDWDDVGMGVAAEIVEEVRTSVRKELGYTCSAGIAQNKLLAKLGSGYKKPN 260
Query: 167 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 226
QQT V + + L++ K++ LGGKLG + E G + LL LQ +
Sbjct: 261 QQTIVRIRAAQRFLNTFKFTKLRNLGGKLGERISEEFGTEELSSLLDTPLQALQLKLNDD 320
Query: 227 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERL 285
T TW++NI RGI EV R L KS S KSF R T A WL ++ R+
Sbjct: 321 TATWVYNIIRGIDKSEVNPRTLIKSMLSAKSF---RPYITTADAGSKWLTIFISDIYSRM 377
Query: 286 CSD-LEQNKRIAHTLTLH 302
+ + + KR T+TL+
Sbjct: 378 EEEGVMEGKRRPKTMTLN 395
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 168/364 (46%), Gaps = 42/364 (11%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 47
EAKE CP I V +A K L YR ++++++
Sbjct: 40 EAKEKCPDIICQHVATWKEGDTTWSYADDAFKEIATRKVSLDPYRIESRKILALIKDCLP 99
Query: 48 -RKGRCERASIDEVYLDLTDAAEAMLAET-----PPESLDEVDEEALKSHILGLESKDGN 101
+ E+ASIDEV+LDL+ +L E P D+ E + L+ K
Sbjct: 100 KEVQKVEKASIDEVFLDLSAQVHGILLERYHELRGPAPYDDPSEPLPRPPSTVLDWK--A 157
Query: 102 DSKATVKE-WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E W D D D ++ IV ++R ++ KE ++TCSAG++ NKMLAKL S
Sbjct: 158 DALVDLDEKWSEEEDPDWDDVVMLIASEIVRDVRARIFKELKYTCSAGLSRNKMLAKLGS 217
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
G KP QT + +V+ L K++ LGGKLG + TV +LL S ++L+
Sbjct: 218 GHKKPNAQTVIRNRAVQQFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPISIEQLK 277
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
+ G +TG WL+ + RG EV R KS S KSF ++ +V WL +
Sbjct: 278 KQLGDSTGAWLYGVIRGEDDSEVNPRTQIKSMLSAKSFRP--SINSVDVASKWLRIFVAD 335
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + +NKR T+ LH + +R SKS P+ G +E FNL
Sbjct: 336 IFSRLVEEGVLENKRRPKTINLH----HRQGAQTR----SKSAPIPLGKGITEEVLFNLA 387
Query: 340 QAGL 343
+A L
Sbjct: 388 KALL 391
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 153/322 (47%), Gaps = 33/322 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK---------- 49
EAK++CP + V R D +YR N S+ VS+ +RK
Sbjct: 96 EAKKMCPNLISQHVATWREGDDKWAYRDDAAANIQSDKVSLDPYRLQSRKILAVIKESLP 155
Query: 50 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 101
+ E+ASIDEV+LDL+ ++L E PE D+ E + L+ +
Sbjct: 156 QDLQKVEKASIDEVFLDLSAQVHSVLLERFPELGNPPPYDDPTENLPSPPVSALDWQ--A 213
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
D+ + E D D D + G IV ++R QVL++ +TCSAG+A NK+L+KL SG
Sbjct: 214 DALIDLNEEEESMDPDWDDVAILIGSEIVRDVRRQVLEKLFYTCSAGVAKNKLLSKLGSG 273
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP QQT + +V L KM+ LGGKLG ++ V +LL D+++
Sbjct: 274 HKKPNQQTVIRNRAVDQFLSGFKFTKMRNLGGKLGENVVTTFNTDAVSELLPILLDQMKA 333
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
G TGTW++N RGI EV +R KS S KSF + T WL ++
Sbjct: 334 KLGHETGTWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--YINTPEKAVRWLRIFVADI 391
Query: 282 SERLCSD-LEQNKRIAHTLTLH 302
RL + + +NKR T+ LH
Sbjct: 392 FARLVEEGVLENKRRPRTINLH 413
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 142/291 (48%), Gaps = 15/291 (5%)
Query: 23 VPVARGKADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLTDAAEAMLAETPP 77
V + K L YR ++ ++ + E+ASIDEV+LDL+ ++L E P
Sbjct: 127 VNIQSDKVSLDPYRLQSRRILGVIKESLPPDIQKIEKASIDEVFLDLSAQVHSILLERFP 186
Query: 78 E-----SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTE 132
E D+ E+ + + L+ + D+ + E D D D + G IV
Sbjct: 187 ELANPPPYDDPTEDLPRPSVAALDWQ--ADALVDLDEEQESVDPDWDDVAILIGSEIVRH 244
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R Q+L+ ++TCSAGIA NK+L+KL SG KP QQT + +V L K++ LG
Sbjct: 245 VRGQILERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNRAVTHFLSGFKFTKIRNLG 304
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
GKLG ++ + V +LL D+++ G +TG W+++ RGI EV +R KS
Sbjct: 305 GKLGENVVSTFNTDAVRELLDIPLDQMKAKLGHDTGNWVYDTIRGIDTSEVNSRTQIKSM 364
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
S KSF + T WL ++ RL + + +NKR T+ LH
Sbjct: 365 LSAKSFRP--YINTPEQAIRWLRIFAADIFARLIEEGVLENKRRPRTINLH 413
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 181/409 (44%), Gaps = 50/409 (12%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK--------- 49
DEAK++CP + V R D +YR N ++ VS+ +RK
Sbjct: 100 DEAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKDAL 159
Query: 50 ----GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDG 100
+ E+ASIDEV+LDL+ ++L E PE D+ E I+ L+ +
Sbjct: 160 PHDLQKVEKASIDEVFLDLSSQIHSILLERFPELKNPPPYDDPTERLPLPSIVALDWQ-- 217
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 218 TDALVDLDEEQETIDPDWDDVAILIGSEIVRDVRAKVRQDLGYTCSAGVASNKLLSKLGS 277
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
G KP +QT V +V L I K++ LGGKLG + + ++ +LL+ ++
Sbjct: 278 GYKKPNKQTVVRNRAVSSFLSGFKITKLRNLGGKLGEQIVSTFNTESLTELLEVPLATIK 337
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G +TG W+ N RGI EV +R KS S KSF + + WL +
Sbjct: 338 SKLGHDTGLWIHNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSQEQAVRWLRIFVAD 395
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + +NKR T+ LH + S+ P+R G A +E L
Sbjct: 396 IFARLVEEGVLENKRRPRTINLHHR--------HEGQVKSRQSPIRQGKALNEESLLEL- 446
Query: 340 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
++ LG V+ + W LS+S + G I +
Sbjct: 447 ---AKDLLGQIIVEGR-----VWPCANLSLSVGGFEDGVKGNMGIDAFL 487
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/451 (28%), Positives = 191/451 (42%), Gaps = 75/451 (16%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----------------LA 47
EAK++CP + V R D +YR N ++ VS+ L
Sbjct: 94 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILATIKESLP 153
Query: 48 RK-GRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 100
R + E+ASIDEV+LDL+ A L +PP S D V E LE +
Sbjct: 154 RDLQKVEKASIDEVFLDLSAQIHAELLRRFPELSSPPPSGD-VSEPLPFPSAAALEWQ-- 210
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
ND+ ++E D D D + G IV +R QV ++ +TCSAGIA+NK+++KL S
Sbjct: 211 NDNLIDLEEDEEAVDPDWDDVAILIGSEIVRRVRAQVREKLGYTCSAGIANNKLVSKLGS 270
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP +QT V +V L + + KM+ LGGKLG + + G ++ +L ++ +
Sbjct: 271 AFKKPNEQTVVRNRAVMLFLTEIKVTKMRNLGGKLGDQVVSTFGTESIKELRDIPLEQFK 330
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL-KTVASVQHWLNQLCE 279
G T W +N RGI EV +R KS S KSF R L K+ WL
Sbjct: 331 AKLGEETAIWFYNTIRGIDHSEVNSRTQIKSMLSAKSF---RPLIKSSEQATKWLRIFAG 387
Query: 280 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNL 338
++ RL + + ++KR T+ LH + S+ CP+ G ++ F L
Sbjct: 388 DIYSRLVEEGILEHKRWPRTINLHHRHAGQTR--------SRGCPIPTGKPLDEQALFIL 439
Query: 339 FQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTS 398
+ L + + G W T LS+S S + G I +F D+
Sbjct: 440 CKELLNQIVAEGG---------AWPCTNLSLSVSGFEEGVKGNMGIGAFFKKRDE----- 485
Query: 399 EQLPDNFIDAAPLSPSGSESYSTLNSTELQN 429
PL P LN TE +N
Sbjct: 486 --------TPPPLRP--------LNDTEFEN 500
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 160/339 (47%), Gaps = 36/339 (10%)
Query: 7 RGDEAKEVCPQIELVQVPV-----------------------ARGKADLSSYRNAGSEVV 43
R ++ KE CP LV V + K L YR A +++
Sbjct: 70 RIEKVKEKCPNCVLVHVETVGFPDQSSSRENVSNPDLLNHGKSETKVSLDRYREASAKIF 129
Query: 44 SILARKGR-CERASIDEVYLDLTDAAEAMLAETPPE--SLDEVDEEALKSHILGLESKDG 100
+L CE+ASIDE YLD+++ + +L T + S+ + E+ L + K+
Sbjct: 130 QLLFSYSELCEKASIDEAYLDVSEQVQDILVATRNQRSSIGSIFEQ------LSMTEKER 183
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
T+ + + + ++L+ G I ++R + + +T SAGIA NK+LAKL S
Sbjct: 184 AYYFETIFQPFGKRELP-LSQILSIGCAIAAKIRYAIYSQFNYTSSAGIAENKLLAKLGS 242
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
+NKP +QT + +V LL++LP+KK++ LGGKLGT ++ T + + +K
Sbjct: 243 SLNKPNRQTLISPKAVPFLLENLPLKKLRGLGGKLGTRIEERTNAKTAKEAQNVTLEKWN 302
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
E G W++N+ RGI V AR + KS + KSF +A + ++ W+ L E
Sbjct: 303 EIVGRENAEWIYNLVRGIDYSPVNARGITKSILAAKSF---KAECSWEGMEKWIKILAYE 359
Query: 281 LSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 319
L ERL D N R +H S+ S S FP+
Sbjct: 360 LCERLRKDETMNSRRPINFIVHYSSVGSVSSSKSIPFPN 398
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 164/368 (44%), Gaps = 40/368 (10%)
Query: 10 EAKEVCPQIELVQVP----------------VARGKADLSSYRNAGSEVVSILARK---- 49
EAK++CP++ V VA K L YR+ +++ ++
Sbjct: 116 EAKKLCPKLITQHVATWREADGKWAYREDPQVATDKVCLDPYRSESRKILVLIKELLPHG 175
Query: 50 -GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV- 107
R E+ASIDEV+LDL+ A+L E PE L L S +L L D +A
Sbjct: 176 LQRVEKASIDEVFLDLSAHVHAILLERFPELLSPQPHRDL-SELLPLPPISDLDWQADTL 234
Query: 108 -------KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
+ L D D D IV LR + ++ +TCSAGIA NK+L+KL S
Sbjct: 235 VDAGDSDNKTLAILDPDWDDVAFYVASGIVRHLRSSIKEKLGYTCSAGIARNKLLSKLGS 294
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP QQT + +V L + K++ LGGKLG + ++ DLL ++++
Sbjct: 295 SYKKPNQQTVIRNRAVAHFLSGVKFTKIRNLGGKLGEQVSRAFNTDSIPDLLTVPIEQMK 354
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G T WL+N RG+ EV R+ KS S KSF L T+ WL +
Sbjct: 355 VKLGDETAIWLYNTLRGVDMSEVNPRIQIKSMLSAKSFRP--TLTTIDQAVRWLRIFAAD 412
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + +++R T+ LH ++ +R S+SCP+ G A F+L
Sbjct: 413 IFSRLVEEGVLEHRRHPKTINLH---YRPLGGQAR----SRSCPIPQGRALDDGTLFDLA 465
Query: 340 QAGLREFL 347
+ L +
Sbjct: 466 KTLLTHIV 473
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 152/322 (47%), Gaps = 33/322 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSILARK--------------- 49
EA+++CP + V R D +YR N S+ VS+ +
Sbjct: 97 EARKLCPDLIAQHVATWREGDDKWAYRDDAAANITSDKVSLDPYRLQSRRILALIKETLP 156
Query: 50 ---GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 101
+ E+ASIDEV+ DL+ ++L E PE D+ E + ++ L+ +
Sbjct: 157 SDLQKVEKASIDEVFCDLSAHVHSILLERFPELNNPPPYDDPTERLPRPPVVALDWQ--A 214
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
D+ + E D D D + G I+ +R ++ + +TCSAGIA+NKML+KL S
Sbjct: 215 DALIDLDEDAENQDPDWDDVAILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSKLGSA 274
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP QQT + +++ L K++ LGGKLG ++ N TV DLL D+++
Sbjct: 275 HKKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLDQMKA 334
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
G TG W++N RGI EV +R KS S KSF ++ T WL ++
Sbjct: 335 RLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIFVADI 392
Query: 282 SERLCSD-LEQNKRIAHTLTLH 302
RL + + +NKR T+ LH
Sbjct: 393 FSRLVEEGVLENKRRPKTINLH 414
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 142/294 (48%), Gaps = 24/294 (8%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR +++I+ + + E+ASIDEV++DL+ A+L E PE
Sbjct: 132 MATHKVSLDPYRLESRRILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHAILLERFPEL 191
Query: 79 ----SLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
D+ E I L+ + D A ++ D D D + G I
Sbjct: 192 ANPPPYDDPTEMLPMPSITALDWRADALVDLPGENAELE------DPDWDDVAILIGSEI 245
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
V ++R+ + + +TCSAG+A NK+L+KL S KP QQT + SV+ L KM+
Sbjct: 246 VRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVIRNRSVQHFLSDFKFTKMR 305
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LGGKLG + TV DLL S ++L+ G +TG W++N RGI EV R+
Sbjct: 306 NLGGKLGEQISQIYHTDTVKDLLGVSVEQLKSKLGDDTGVWVYNTVRGIDNSEVNPRVQI 365
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF ++ T WL ++ RL + + +NKR T+ LH
Sbjct: 366 KSMLSAKSFRP--SIATFEQGVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 146/299 (48%), Gaps = 35/299 (11%)
Query: 25 VARGKADLSSYRNAGSEVVSILARKG-------RCERASIDEVYLDLTDAAEAMLAETPP 77
+A K L YR +++++ KG R E+ASIDEV++DL+ +++ E P
Sbjct: 1 MATHKVSLDPYRLESRRILALI--KGSLPSELQRVEKASIDEVFMDLSAHVHSVMLERYP 58
Query: 78 E-----SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL--------LA 124
E D++ E I L+ + + L DA+ + +
Sbjct: 59 ELAGPPPYDDLMENLPTPPITALDWQ---------TDHLVDLDANQTEDDDPDWDDIAIL 109
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G IV ++R ++ +E ++TCSAG+A NKMLAKL SG KP QQT + +V+ L +
Sbjct: 110 IGSEIVRDIRAKIFEELKYTCSAGVARNKMLAKLGSGHQKPNQQTVIRNRAVQNFLSEMK 169
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG + TV DLL ++LQ G TG WL++I RG EV
Sbjct: 170 FTKIRNLGGKLGDEVVAMFNTETVKDLLDVPLEQLQR-LGDGTGIWLYDIIRGNDTSEVN 228
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+RL KS S KSF ++ T WL ++ R + + +NKR T+TLH
Sbjct: 229 SRLKIKSMLSAKSFRP--SINTFEQGIRWLRIFSADIFSRCVEEGVLENKRRPKTITLH 285
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 26/255 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR--GKADLSSYRNAGSEVVSILARKGR---CERASIDEV 60
M EAK C + + VP+ KAD+ YR+A +EV +L E+AS+DE
Sbjct: 730 MTVTEAKAKCADLNVCHVPIGEYADKADIQKYRDASAEVFEVLNNIDSNIIVEKASVDEA 789
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRC-- 114
+LDL+ E +L EV++E S I+G DGND K T +E + R
Sbjct: 790 FLDLSIYIEKIL---------EVEQETELSDIIGALPTTHIADGNDKKETEEERIDRIAK 840
Query: 115 -----DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
+D K L + + ++R ++ ++T+F CSAGI +NKM+AKL +KP QQT
Sbjct: 841 FYEETKSDENQKKLMIAAIAIEDIRAKIREKTQFYCSAGIGNNKMMAKLVCARHKPRQQT 900
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+PF V+ +L PI ++ GGK+GT + L + T+G++L +++ E++
Sbjct: 901 IIPFQYVRDILKVTPIGDIRGFGGKMGTKIMEMLKIKTMGEILTIEFERVVEAFP-EQHE 959
Query: 230 WLWNIARGISGEEVQ 244
+L +A G E V
Sbjct: 960 YLKCVAEGYDDEPVH 974
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 24/294 (8%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR ++++I+ + + E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRLESRKILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHTILLERFPEL 191
Query: 79 ----SLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
D+ E I L+ + D D A ++ D D D + G I
Sbjct: 192 ANPPPYDDPTEMLPMPSITALDWQADALVDLPDENAELE------DPDWDDVAILIGSEI 245
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
V ++R+ + + +TCSAG+A NK+L+KL S KP QQT + S++ L KM+
Sbjct: 246 VRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMR 305
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LGGKLG + TV DLL S ++L+ G +TG W++N RGI EV R+
Sbjct: 306 NLGGKLGEQISQMFHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQI 365
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 366 KSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 176/409 (43%), Gaps = 51/409 (12%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 46
EAK++CP + V +A K L YR +++I+
Sbjct: 73 EAKKLCPDLLHPHVATWREGDDKWAYRPDAAENIATDKVSLDPYRLESRRILAIIKEHLP 132
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 106
+ + E+A IDEV+LDL+ A+L E PE L + S +L + D +A
Sbjct: 133 SHLQKVEKAGIDEVFLDLSAHVHAVLLERFPE-LSAPPPDGNPSELLPVPPVSALDWQAD 191
Query: 107 V-----KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
E D D D IV +R + + +TC+AGIA NK+L+KL S
Sbjct: 192 ALVDLDDESAEFDDPDWDDVAFLVASEIVRNIRAAIRDKLRYTCAAGIARNKLLSKLGSA 251
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP QQT + +V+ L K + LGGKLG + +V +LL S ++L+
Sbjct: 252 HRKPNQQTVIRNRAVRKFLSGFKFTKFRNLGGKLGEHVSQVFNTESVQELLSVSLEQLKL 311
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEE 280
G TGTW++N RGI EV +R KS S KSF PG + TV WL +
Sbjct: 312 RLGDETGTWVYNTLRGIDTSEVNSRTQIKSMLSAKSFRPG---INTVEQATRWLKIFAAD 368
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + ++KR T+ LH S +R S+ P+ G + E F L
Sbjct: 369 IFARLVEEGVLEHKRRPKTINLH----HRHGSQTR----SRQSPIPQGRSLDAETLFRLA 420
Query: 340 QAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
++ L + + Q H W + LS+S +SG I +
Sbjct: 421 KSLLHQIV-------QEGHV--WPCSNLSLSVGGFEDGISGNMGIAGFL 460
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 182/413 (44%), Gaps = 59/413 (14%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 46
EAKE CP+I V +A K L YR ++++I+
Sbjct: 94 EAKEKCPEIICQHVATWKEGDAKWSYSEDAWKEIATRKVSLDPYRIESRKILAIIKEFLP 153
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 98
A K R E+ASIDEV+LDL+ +L E PE D+ E + L+ K
Sbjct: 154 ADKQRVEKASIDEVFLDLSAHVHFILLERYPELRGPPPYDDPTEPLPRPPTTALDWKADA 213
Query: 99 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 156
D + S++ D D D ++ IV ++R + ++ ++TCSAG++ NKMLA
Sbjct: 214 LVDLDTSQSEED------DPDWDDIVMLIASEIVRDVRKAIWEQLKYTCSAGLSRNKMLA 267
Query: 157 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 216
KL SG KP QT + +V+ L K++ LGGKLG + TV +LL
Sbjct: 268 KLGSGHKKPNSQTIIRNRAVQHFLSGFKFTKIRNLGGKLGDEVVAAFNTDTVSELLPVPV 327
Query: 217 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 276
+++++ G +TG WL +I RG EV R KS S KSF ++ + WL
Sbjct: 328 EQMKKQLGDDTGMWLHSIIRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFEVACRWLRI 385
Query: 277 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 335
++ RL + + NKR TLT+H + +R SK P+ G A I ED
Sbjct: 386 FVADIFGRLVEEGVLDNKRRPKTLTIH----HRQGAQTR----SKQAPIPMGRA-ITED- 435
Query: 336 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
L++A + L GV G W LS++ + G I +
Sbjct: 436 -GLYEAA-KNLLA--GVVVDG---RAWPCANLSLAVGGFEEGVQGNLGIGNFL 481
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 178/415 (42%), Gaps = 63/415 (15%)
Query: 10 EAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILAR--- 48
EAK CP++ + V R K L YR +++L
Sbjct: 106 EAKTKCPELVVQHVATWREGDDKWAYRDDAARHIHTDKVSLDPYRLESRRTLALLKEILP 165
Query: 49 ---KGRCERASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEE-------ALKSHILG 94
+ E+ASIDEV+LDL+ +L E PE D+ E AL H
Sbjct: 166 PPPVQKVEKASIDEVFLDLSAQIHQILLERYPELRYAPYDDPTEPLPLPPSTALNWHADA 225
Query: 95 LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
L D +++ +W + G +V +R + ++TCSAGIA NKM
Sbjct: 226 LVDLDLAETEDDDPDWDDVA--------MNIGAEVVRGVRQTIYDRLKYTCSAGIARNKM 277
Query: 155 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
+AKL +G KP QQT V +V+ L K++ LGGKLG + + G V +LL
Sbjct: 278 MAKLGAGYKKPNQQTIVRNRAVQHFLSGFKFTKIRNLGGKLGDHVVDTFGTDEVTELLAI 337
Query: 215 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 274
++L+ G +TGTWL+ I RG EV +R KS S KSF ++ TV WL
Sbjct: 338 PIEQLKARLGDDTGTWLYGIIRGEDNSEVNSRTQIKSMLSAKSFRP--SINTVEQANRWL 395
Query: 275 NQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE 333
++ RL + + +NKR T+TLH + +R SK P+ G KI E
Sbjct: 396 RIFVADIYARLVEEGVTENKRRPKTITLH----HRQGAQTR----SKQLPIPQGK-KIDE 446
Query: 334 DTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+T LF+ + LG V + W LS+S ++G I +
Sbjct: 447 NT--LFELA-KTLLGQVVVDGR-----AWPCANLSLSVGGFEDGVAGNKGIDTFL 493
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 24/294 (8%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR ++++I+ + + E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRLESRKILAIIKEELPPHLQKVEKASIDEVFMDLSAQVHTILLERFPEL 191
Query: 79 ----SLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
D+ E I L+ + D D A ++ D D D + G I
Sbjct: 192 ANPPPYDDPTEMLPMPSITALDWQADALVDLPDENAELE------DPDWDDVAILIGSEI 245
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
V ++R+ + + +TCSAG+A NK+L+KL S KP QQT + S++ L KM+
Sbjct: 246 VRKVRIAIEDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMR 305
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LGGKLG + TV DLL S ++L+ G +TG W++N RGI EV R+
Sbjct: 306 NLGGKLGEQISQMYHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQI 365
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 366 KSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 41/369 (11%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYRN-AGSEVVS---------ILARK--------- 49
+EAK++CP++ V R D +YR+ A + +V+ + +RK
Sbjct: 151 EEAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIKDAL 210
Query: 50 ----GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDG 100
+ E+ASIDEV+LDL+ ++L E PE D+ E+ I L+ +
Sbjct: 211 PADVQKVEKASIDEVFLDLSSQVRSILLERFPELSNPPPYDDPTEKLPLPSIAALDWQ-- 268
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 269 TDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSKLGS 328
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP +QT V +V + + K++ LGGKLG + + V +LL+ ++
Sbjct: 329 AYKKPNKQTVVRNRAVSAFMAGFKVTKLRNLGGKLGEQIVSTFNTENVTELLEVPLSSMK 388
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G +TG W++N RGI EV +R KS S KSF + + WL +
Sbjct: 389 AKLGHDTGFWVFNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAAD 446
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + +NKR T+ LH + S+ P+ G A +E F L
Sbjct: 447 IFARLVEEGVLENKRRPKTMNLH--------HRHEGQVRSRQVPIHQGRALDEECLFELA 498
Query: 340 QAGLREFLG 348
+ L + +
Sbjct: 499 KDLLSQIIA 507
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 150/324 (46%), Gaps = 44/324 (13%)
Query: 9 DEAKEVCPQIELVQVPVAR------------------GKADLSSYR---NAGSEVV-SIL 46
+EA+ CP + L VP R KA L YR G E++ S L
Sbjct: 82 EEARVKCPNLILQHVPTWREGCASWAYRPVSTIMPGTDKAALGPYRLESRKGLELIKSTL 141
Query: 47 ARK--GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK 104
+ E+AS+DE+YLDL+ ++L + P LD E + K +L L +
Sbjct: 142 PHSPPQKIEKASVDEMYLDLSAQVHSILLQRYPALLDV--ESSSKDEMLPL-------PR 192
Query: 105 ATVKEW----LCRCDA-----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKML 155
+V W + DA D D L G IV +R ++ K +TCSAGIA NKML
Sbjct: 193 TSVLNWHADAVFGADAEDDHFDWDDIALNIGSEIVDNIRREIFKHMRYTCSAGIARNKML 252
Query: 156 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
AKLASG NKP QT + + L + K++ LGG LGT + + V +LL
Sbjct: 253 AKLASGYNKPNHQTVILRRGTREFLSTHKFTKIRGLGGLLGTQISEKFNTKMVSELLAIP 312
Query: 216 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 275
+++E G G W++N+ RG EV R+ +S S K+F P+ + ++ WL
Sbjct: 313 LSQMKEEMGLEVGAWVFNVIRGEEQSEVNPRMHVQSMLSAKTFV-PKIV-SIDQAAKWLR 370
Query: 276 QLCEELSERLCSDLEQNKRIAHTL 299
+L RL +N RI+ T+
Sbjct: 371 IFVADLLGRLDELGSENHRISPTI 394
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 143/294 (48%), Gaps = 24/294 (8%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR ++++I+ + + E+ASIDE+++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRLESRKILAIIKEELPPHLQKVEKASIDELFMDLSAQVHTILIERFPEL 191
Query: 79 ----SLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
D+ E I L+ + D D A ++ D D D + G I
Sbjct: 192 ANPPPYDDPTEMLPMPSITALDWQADALVDLPDENAELE------DPDWDDVAILIGSEI 245
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
V ++R+ + + +TCSAG+A NK+L+KL S KP QQT + S++ L KM+
Sbjct: 246 VRKVRIAIKDKLGYTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMR 305
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LGGKLG + TV DLL S ++L+ G +TG W++N RGI EV R+
Sbjct: 306 NLGGKLGEQISQMFHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVHI 365
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 366 KSMLSAKSFRP--SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 165/382 (43%), Gaps = 68/382 (17%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----------------LA 47
EAK++CP I L V R + +YR N ++ VS+ L
Sbjct: 98 EAKKLCPDIILQHVATWREGDEKWAYRDDAASNIATDKVSLDPYRLESRRILKCIKDALP 157
Query: 48 RKGR-CERASIDEVYLDLTDAAEAMLAET-----PPESLDEVDEEALKSHILGLESKDGN 101
K R E+ASIDEV++DL+ A L E P D+ E +L L
Sbjct: 158 EKYRKVEKASIDEVFMDLSAQIHATLLERYEELRGPAPYDDPTE------LLPL------ 205
Query: 102 DSKATVKEWLCRC------------DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGI 149
TV +W D D D + G I+ ++R V ++TCS G+
Sbjct: 206 -PPTTVLDWKADALVDLDVDETEEDDPDWDDVAILIGSEIIRDVRAAVRTHLKYTCSGGV 264
Query: 150 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVG 209
A NKMLAKL S KP QQT + +++ L K++ GGK+G S+ TV
Sbjct: 265 AQNKMLAKLGSAHKKPNQQTIIRNRAIQQFLSEFKFTKIRGFGGKMGDSITAAFNTDTVQ 324
Query: 210 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 269
DLL D+L++ G +TGTW++ I RG EV +R KS S KSF ++ T
Sbjct: 325 DLLAVPIDQLKQKLGDDTGTWVYEIIRGKESSEVNSRTAIKSMLSAKSFRP--SINTAEQ 382
Query: 270 VQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGT 328
WL ++ RL + + +NKR T+ LH S + S+S P+ G
Sbjct: 383 ANRWLRIFAADIYSRLVEEGVLENKRRPKTINLHHR--------SGGQTKSRSSPISLGK 434
Query: 329 AKIQEDTFNLFQAGLREFLGSF 350
KI D LF+ R LG
Sbjct: 435 -KI--DEVGLFELA-RSLLGQL 452
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 105/202 (51%), Gaps = 22/202 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQ----VPVARGKADLSSYRNAGSEVVSILARKGRCERASI 57
+ MR +EAK++CP + LV +P K L YRNA EV +L + G E+ASI
Sbjct: 59 ITRHMRVEEAKKICPDLHLVHKRDDLP---RKVSLERYRNASMEVFEVLQQYGIVEKASI 115
Query: 58 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 117
DE Y+D+T + ++ D+ L E+ D D T KE
Sbjct: 116 DEAYIDVTKTVNNLYRRIFDLEQNDADKHGLN------ETNDRFDEINTAKE-------- 161
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
D L G +I R VL+ T FTCS GI+HNKML+KLAS +KP QQT VP V+
Sbjct: 162 -EDLKLLLGAVICQAARAGVLEHTSFTCSGGISHNKMLSKLASARHKPNQQTIVPVQGVQ 220
Query: 178 GLLDSLPIKKMKQLGGKLGTSL 199
L++ LP+K ++ LGGK G L
Sbjct: 221 SLMEQLPLKNIRGLGGKFGNQL 242
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 130/272 (47%), Gaps = 15/272 (5%)
Query: 108 KEWLCR--CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
K WL R + HR+KL G + R +T S G++ NKMLAKL SGMNKP
Sbjct: 285 KSWLNRPLSEWSHREKLKIAGAYVCNVAREDCFVNLGYTLSCGVSSNKMLAKLTSGMNKP 344
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
T + S LL+ LPI +++ LGG LG L LGVTT+G L K L + G
Sbjct: 345 NCCTILEESFTPSLLEHLPIDRIRGLGGNLGEELSEVLGVTTIGGLAKADRKSLLMALGR 404
Query: 226 NTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
+ LW ARG+ + V+ R PKS + K+F G L+T V W+ +L EELSE
Sbjct: 405 DEKKTLWVQRAARGVDDDPVKERSAPKSIATSKTFRGAMCLETTDQVLKWIGELAEELSE 464
Query: 284 RLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 343
R D + +R TLTL + ++ S R S PL Q D +
Sbjct: 465 RTELDGQDWRRHPKTLTLGIRSNLTAHSAHR------SHPLSGSGNDCQADNLKTLGGTI 518
Query: 344 -REFLGSFGVKTQGSHYSGWRITALSVSASKI 374
++FL +G+ G++ T LS++ S
Sbjct: 519 FKKFLAEWGIMNN----RGFQCTVLSLTTSNF 546
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M+ EA+ CP++ VQVP KADL YR+AG++V + LA+ G ERASIDE Y
Sbjct: 100 VKRNMKIGEARRCCPEMIFVQVPTKHSKADLKIYRDAGAKVAAELAKHGTIERASIDEAY 159
Query: 62 LDLTDAAEAMLAETPPESLDE-----VDEEALKSHILG 94
LD+T A A+L + +D + E +SH+ G
Sbjct: 160 LDVTKEANAVLEKCERNEMDFYRDVLMSERVSRSHVAG 197
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 151/343 (44%), Gaps = 57/343 (16%)
Query: 10 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVS------ 44
EAK+ CP++ L V R K L YR ++S
Sbjct: 97 EAKKRCPELVLQHVATFREGEGGRWAYRDDASYKIKTDKVSLDPYRAQSRRILSTIKEEV 156
Query: 45 ------ILARK--------GRCERASIDEVYLDLTDAAEAMLAETPPE------SLDEVD 84
IL+ K + E+AS+DEV++DL+ A+L + PE + D+
Sbjct: 157 SRQRDEILSSKDVPLEFQAAKIEKASVDEVFIDLSSLVYAVLYQRYPELRRAPTTFDKTT 216
Query: 85 EEALKSH-ILGLESKDGN---DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKE 140
L +DG D + T ++ D D D + G I +R + +
Sbjct: 217 SLPTPPTTALEWFPEDGLVDLDERETEED-----DPDWDDVAMLIGAEITRSIRAVIWDK 271
Query: 141 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 200
+TCSAGIA NKM++KL S NKP +QT + +++ L K++ LGGKLG +
Sbjct: 272 LSYTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQKFLGGFQFTKIRWLGGKLGERIS 331
Query: 201 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 260
E G V +LL S D+ + +T W++NI RG+ EV R KS S KSF
Sbjct: 332 AEFGTEEVKELLNVSLDQFKAKLDDDTAVWVYNIIRGVDDSEVNPRTQIKSMLSAKSFRP 391
Query: 261 PRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ + + WL +L RL D L +NKR TL+LH
Sbjct: 392 --SINSADQARKWLRIFAADLYNRLVEDGLLENKRRPTTLSLH 432
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 169/371 (45%), Gaps = 32/371 (8%)
Query: 29 KADLSSYRNAGSEVVSILARK-----GRCERASIDEVYLDLT-DAAEAMLAETP----PE 78
K L YR ++++++ + E+ASIDEV+LDL+ E +L P P
Sbjct: 133 KVSLDPYRLECRKILAVIKESLPSDLQKVEKASIDEVFLDLSAQVHEILLRRFPELANPP 192
Query: 79 SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVL 138
D+ E + L+ + D+ + E D D D + G IV +R Q+
Sbjct: 193 PYDDPTENLPGPSVAALDWQ--ADALVDLNEEEESMDPDWDDVAILIGSEIVRHVRGQIF 250
Query: 139 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 198
+ ++TCSAGIA NK+L+KL SG KP QQT + +V L K++ LGGKLG +
Sbjct: 251 ERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNRAVSHFLSGFKFTKIRNLGGKLGEN 310
Query: 199 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
+ + V +LL ++++ G +TG+W+ N RGI EV +R KS S KSF
Sbjct: 311 VVSTFNTDAVSELLAIPLEQMKAKLGHDTGSWVHNTIRGIDLSEVNSRTQIKSMLSAKSF 370
Query: 259 PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKF 317
+ T WL ++ RL + + +NKR T+ LH D + K
Sbjct: 371 RP--YINTPEQAVRWLRIFAADIFARLVEEGVLENKRRPRTINLHHR------HDGQTK- 421
Query: 318 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 377
S+ P+ G ++ F L ++ + + + T+GS W LS+S
Sbjct: 422 -SRQGPIPQGKTLDEQALFELAKSLMNQIM------TEGSI---WPCANLSLSVGGFEDG 471
Query: 378 LSGTCSIMKYF 388
++G I +
Sbjct: 472 VTGNMGIGAFL 482
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 169/369 (45%), Gaps = 41/369 (11%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYRN-AGSEVVS---------ILARK--------- 49
+EAK++CP++ V R D +YR+ A + +V+ + +RK
Sbjct: 98 EEAKKLCPELIAQHVATWREGDDKWAYRDDAAANIVTDKVSLDPYRLQSRKILACIKDAL 157
Query: 50 ----GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDG 100
+ E+ASIDEV+LDL+ ++L E PE D+ E+ I L+ +
Sbjct: 158 PADVQKVEKASIDEVFLDLSSQVRSILLERFPELSNPPPYDDPTEKLPLPSIAALDWQ-- 215
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 216 TDALIDLNEEQEAIDPDWDDVAILIGSEIVRKVRSEVRQKLGYTCSAGVASNKLLSKLGS 275
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP +QT V +V + + K++ +GGKLG + + V +LL+ ++
Sbjct: 276 AYKKPNKQTVVRNRAVSAFMAGFKVMKLRNMGGKLGEQIVSTFNTENVTELLEVPLSSMK 335
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G +TG W++N RGI EV R KS S KSF + + WL +
Sbjct: 336 AKLGHDTGFWVFNTIRGIDTSEVNPRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAAD 393
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLF 339
+ RL + + +NKR T+ LH + S+ P+ G A +E F L
Sbjct: 394 IFARLVEEGVLENKRRPKTMNLHHR--------HEGQVRSRQVPIHQGRALDEECLFELA 445
Query: 340 QAGLREFLG 348
+ L + +
Sbjct: 446 KDLLSQIIA 454
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 138/296 (46%), Gaps = 16/296 (5%)
Query: 3 VSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG--RCERASIDEV 60
V++ R V ++ ++ K L YR ++++I R+G + E+AS+DE
Sbjct: 103 VATWRVQNDTAVMGYHDMTNASISTDKVSLDHYRRESKKILAIF-REGCPKVEKASVDES 161
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSH-----------ILGLESKDGNDSKATVKE 109
+LDL+ L E E L VD E + + + G+E + + E
Sbjct: 162 FLDLSGLVFGKLLERFEEELGVVDGEIVPPYGDTTERLRMPEVAGVEWGNSHLVDLDDGE 221
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
D D ++ IV ++R +V + +TCSAGI+ NKMLAKL SG KP QQT
Sbjct: 222 EGEEEPIDWDDIIMGIAAEIVADIRGEVRRRLGYTCSAGISRNKMLAKLGSGYKKPNQQT 281
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
V +V L S+ ++ LGGKLG+ + G V ++L + + G +TGT
Sbjct: 282 IVRNRAVTHFLSSMKFTSIRNLGGKLGSEVATAFGTENVSEVLSVPLETFKAKLGDDTGT 341
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
WL+ RGI EV R KS S KSF A+ ++WL C ++ R+
Sbjct: 342 WLYKTIRGIDTTEVLTRTDIKSMLSAKSFTP--AITRYQQGENWLKVFCADIVSRV 395
>gi|75756001|gb|ABA27055.1| TO87b-2 [Taraxacum officinale]
Length = 95
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 74/102 (72%), Gaps = 7/102 (6%)
Query: 282 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 341
SERL +D+E NKRIAHTLTLH +A+K D D+ KKFPSKSCPLRYG K+ ED NLF
Sbjct: 1 SERLHTDMETNKRIAHTLTLHVTAYKCGDRDTDKKFPSKSCPLRYGAGKVLEDAVNLFHC 60
Query: 342 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS 383
GLRE++ Q S GWRIT LSVSASKIV + SGTCS
Sbjct: 61 GLREYMNH-----QSS--GGWRITGLSVSASKIVDIPSGTCS 95
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 148/328 (45%), Gaps = 44/328 (13%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 46
EAK++CP I V +A K L YR ++ +++
Sbjct: 6 EAKKLCPNIINQHVATWREGEDKWAYRPDSAENIATDKVSLDPYRLESRKIFAVIKEILP 65
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 98
+ + E+A IDE++LDL+ A+L E PE + E I L+ +
Sbjct: 66 SNLQKVEKAGIDEMFLDLSAHVHALLLERFPELASGPPKGDPSEPLPMPPISALDWQADA 125
Query: 99 --DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 156
D +D A ++ D D D +V +R + + +TC+AGIA NK+L+
Sbjct: 126 LVDLDDENAELE------DPDWDDVAFCVASEVVRNVRAAIRDKLRYTCAAGIARNKLLS 179
Query: 157 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSE 216
KL S KP QQT + +V+ L K + LGGKLG + E G +V +LL S
Sbjct: 180 KLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGKLGEQVTREFGSESVPELLSVSV 239
Query: 217 DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLN 275
++L+ G TG W++N RGI EV R KS S KSF PG + TV WL
Sbjct: 240 EQLKLKLGDETGVWVYNTLRGIDTSEVNPRTQIKSMFSAKSFRPG---ISTVEQATKWLR 296
Query: 276 QLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR T+ LH
Sbjct: 297 IFVADIFARLVEEGVLENKRRPRTINLH 324
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 170/382 (44%), Gaps = 61/382 (15%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR- 48
M EA + CP++ V V R K L YR +V+ +
Sbjct: 87 MSVTEATKKCPELICVHVMTYREGSREPGYFPNAKPSTHKVSLDHYRRESIKVLRVFQST 146
Query: 49 --KGRCERASIDEVYLDLTDAA-EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK- 104
+ ERASIDE + DLT E +L P L +V +A DG DS
Sbjct: 147 LPEAEIERASIDEAFFDLTAPVREEILRRYP--YLRDVPSDA----------TDGMDSPL 194
Query: 105 --ATVKEWLCRCD---------------ADHRDKLLACGVLIVTELRMQVLKETEFTCSA 147
A V +W R + D LA G +V ++R +V K+ +T SA
Sbjct: 195 PPAPVIDWTGRGNVLAIREGEEAGVDGQGTWADVALALGAEMVHKVRQEVHKQLGYTTSA 254
Query: 148 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 207
GIA NK +AKL + KP QT + +++ L+ +P KK++ LGGKLG +L + T
Sbjct: 255 GIARNKTMAKLCASCKKPFGQTVLRDAAIPLYLNPMPFKKIRFLGGKLGDALASAYDAKT 314
Query: 208 VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 267
+GDLL S++ +Q+ +G W+++I RG EV+ R KS + K+ A+KT
Sbjct: 315 IGDLLSVSKEDMQQQFG-EESYWVYDILRGRDYAEVKERTGVKSMMASKNVRP--AIKTF 371
Query: 268 ASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRY 326
+ QHWL L ELS RL + + + TL LH K R S+ CP +
Sbjct: 372 SDGQHWLRVLSAELSLRLEEARDLSPAVWPKTLVLH---IKQGFDAPR----SRQCPFPF 424
Query: 327 GTAKIQEDTFNLFQAGLREFLG 348
A E L + LRE +G
Sbjct: 425 TNALSDEYIARLGERLLRELVG 446
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 156/335 (46%), Gaps = 23/335 (6%)
Query: 25 VARGKADLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR ++++++ + E+ASIDEV+LDL+ +L E PE
Sbjct: 65 IATDKVSLDPYRLESRKILALIRDTLPPNLQKVEKASIDEVFLDLSAHVHTILLERFPEL 124
Query: 79 ----SLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELR 134
D++ E I L+ K D+ + E D D D + G IV +R
Sbjct: 125 SNPPPYDDLAERLPLPSIAALDWK--ADALVDLDEDQESQDPDWDDVAILIGSEIVRNVR 182
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 194
QV +TCSAGIA+NKM++KL SG KP QT V +V L + K++ LGGK
Sbjct: 183 AQVHGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGK 242
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 254
LG + + ++ DLL+ S ++++ G TG+WL + RGI EV +R KS S
Sbjct: 243 LGERVVSVFNTQSIKDLLEVSLEQMKSKLGDETGSWLHDTLRGIDNSEVNSRTQIKSMLS 302
Query: 255 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDS 313
KSF ++ T WL ++ RL + + N+R ++ LH +
Sbjct: 303 AKSFRP--SISTEEQALKWLRIFVGDIFSRLVEEGVLDNRRRPRSINLHHRHAGQTR--- 357
Query: 314 RKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 348
SK P+ G +E F+L + L + L
Sbjct: 358 -----SKQSPIPPGQVIDEESLFHLAKDLLTQILA 387
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 158/357 (44%), Gaps = 43/357 (12%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 110
R E+A IDEV++DL+ L E P + E + + G TV EW
Sbjct: 170 RVEKAGIDEVFVDLSALVYETLLEWYPMLREGEVELDVNERLPG--------PPTTVLEW 221
Query: 111 -----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
L D D D + G IV +R + + ++TCSAGIA NKM+AK
Sbjct: 222 GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKMMAK 281
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L S NKP +QT V +++ L +++ LGGKLG + G VGDLL+ +
Sbjct: 282 LGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIE 341
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQ 276
+L+ G +TGTWL+ I RG EV R KS S KSF PG +K+ + WL
Sbjct: 342 QLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKSMLSTKSFRPG---IKSSGQAEKWLRI 398
Query: 277 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 335
++ RL + + +NKR +T+H ++ + S+ P+ G
Sbjct: 399 FVADIYGRLLEEGVLENKRRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTML 450
Query: 336 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
F+L + L + + + W LS++ S L+G S+ +F D
Sbjct: 451 FDLAKTLLAQVVNEGNI---------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 498
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 149/326 (45%), Gaps = 40/326 (12%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV-----SIL 46
EAKE CP I V +A K L YR +++ ++
Sbjct: 85 EAKEKCPDIICQHVATWKEGNATWEYADDAFKEIAIRKVSLDPYRIESRKILKCIKDTLP 144
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAE-----TPPESLDEVDEEALKSHILGLESKDGN 101
A K R E+ASIDEV+LDL+ +L E P D+ E K L+ K
Sbjct: 145 ADKQRVEKASIDEVFLDLSAQVHGILLERYPGLKGPPPYDDPSEPLPKPPTTVLDWKADA 204
Query: 102 ----DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
D K T ++ D D D ++ IV ++R V K+ +T SAGI+ NKMLAK
Sbjct: 205 LVDLDEKYTEED-----DPDWDDIVVLLASEIVRDVRAAVFKQLNYTMSAGISRNKMLAK 259
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L SG KP QT + +V+ L K++ LGGKLG + TV +LL S +
Sbjct: 260 LGSGHKKPNSQTVIRNRAVQHFLSGYKFTKIRSLGGKLGDQIVAAFNTDTVAELLPVSVE 319
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
+L++ G TG+WL++I RG EV R KS S KSF ++ + WL
Sbjct: 320 QLKKQLGDETGSWLYDILRGEDNSEVNPRTQIKSMLSAKSFRP--SINSFDVACKWLRIF 377
Query: 278 CEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR ++ +H
Sbjct: 378 VSDIYGRLVEEGVLENKRRPKSINIH 403
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 159/357 (44%), Gaps = 43/357 (12%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 110
R E+A IDEV++DL+ L E P + E + + GL + TV EW
Sbjct: 166 RVEKAGIDEVFVDLSALVYETLLEWYPMLREGEVELDVNERLPGLPT--------TVLEW 217
Query: 111 -----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
L D D D + G IV +R + + ++TCSA IA NKM+AK
Sbjct: 218 GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAAIARNKMMAK 277
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L S NKP +QT V +++ L +++ LGGKLG + G VGDLL+ +
Sbjct: 278 LGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIE 337
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQ 276
+L+ G +TGTWL+ I RG EV R KS S KSF PG +K+ + WL
Sbjct: 338 QLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKSMLSTKSFRPG---IKSSGQAEKWLRI 394
Query: 277 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 335
++ RL + + +NKR +T+H ++ + S+ P+ G
Sbjct: 395 FVADIYGRLLEEGVLENKRRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTML 446
Query: 336 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
F+L + L + + + W LS++ S L+G S+ +F D
Sbjct: 447 FDLAKTLLAQVVNEGNI---------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 494
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 46/329 (13%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILA---- 47
EAK++CP + V +A K L YR +++ +
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 48 -RKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 98
R E+AS+DEV++DL+ A L E PE D++ E+ L+ K
Sbjct: 158 KHLQRVEKASVDEVFMDLSAQIHATLLERYPELKGPAPYDDLTEQLPLPPTTFLDWKADA 217
Query: 99 ----DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
D N+++ D D D + G IV +R + ++ ++TCSAG+A NKM
Sbjct: 218 LVDLDKNEAETD--------DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKM 269
Query: 155 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
L+KL S KP QQT + +++ L K++ LGGK G + V DLL
Sbjct: 270 LSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLV 329
Query: 215 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 274
++L++ G TGTW++N+ RGI +V +R KS S KSF ++ T WL
Sbjct: 330 PVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWL 387
Query: 275 NQLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR T+ LH
Sbjct: 388 RIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|409048993|gb|EKM58471.1| hypothetical protein PHACADRAFT_140428 [Phanerochaete carnosa
HHB-10118-sp]
Length = 629
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 120/437 (27%), Positives = 184/437 (42%), Gaps = 73/437 (16%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 50
+AK+ CP +E+V V + K L YR ++ + G
Sbjct: 102 DAKKRCPHLEVVHVATYKEGEAEPGYWENPDTRTHKVSLDYYRKESWKIYHMFKEGLPIG 161
Query: 51 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHIL---GL----- 95
E+ASIDE ++D T LAE PP++ D + GL
Sbjct: 162 EVEKASIDEAFIDFTRPVREEILSRYPYLAEVPPDAPFGKDTPLPPPPPISWDGLGTVIP 221
Query: 96 ------ESKDGNDSKATVKEWLCRCDADH------------RDKLLACGVLIVTELRMQV 137
E KD ND + E DAD D L+ ++ ++R V
Sbjct: 222 VNPPREEKKDTNDEEGN--EDAIHEDADEEGVHEDDASATWHDVALSIAAELMGKIRHDV 279
Query: 138 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 197
+ ++ SAGI+ NK LAKL + KP Q+ + +++ L +P +K++ LGGKLG
Sbjct: 280 YTKLGYSTSAGISRNKFLAKLTASYKKPNNQSILRNAAIPNYLRPMPFQKIRFLGGKLGK 339
Query: 198 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGK 256
+L E V+TV DLL + D++Q +G W+W I RG+ EV+ + + KS + K
Sbjct: 340 ALAEEYDVSTVSDLLTVNLDEIQRKFG-EESIWVWEILRGVDRTEVKEKPPITKSMLASK 398
Query: 257 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 315
+ P P + T + HW+ L EL+ RL E + +L LH +
Sbjct: 399 NLPQP--IVTASQGHHWIRVLAAELALRLREARESIPALWPKSLVLHV-------QQGHE 449
Query: 316 KFPSKSCPLRYGTAKIQEDTFNLFQAGL-REFLGSFGVKTQGSHYSGWRITALSVSASKI 374
F SK P + T +I D L +E +G T S + +IT + +S S I
Sbjct: 450 AFRSKQAPFSF-TREITVDVIATAGDKLWKELVG-----TDTSRKAPMKITHIQLSFSGI 503
Query: 375 VPVLSGTCSIMKYFNGP 391
V +G I +F P
Sbjct: 504 VSTETGQRRIEGFFQKP 520
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 151/335 (45%), Gaps = 57/335 (17%)
Query: 2 VVSSMRGDEAKEVCPQIELVQV---------------PVARGKADLSSYRNAGSEVVSIL 46
+V R EA CP + LV V P KA L YR A ++V +I
Sbjct: 55 IVRHERVSEALRKCPDLHLVHVETIGGDKPGTPESLGPRGNAKASLERYRQASAKVFNIF 114
Query: 47 ARKGR-CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 105
R + CERASIDE YLD+++ E ML + ++D E+ + H L LE +
Sbjct: 115 RRYSKLCERASIDEAYLDVSEQVEEMLEK-------DMDWES-ELHRL-LEPTGSETTSK 165
Query: 106 TVKEWLCRCDA----DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
V L + + D+ L G +I +R V E +T S
Sbjct: 166 GVPVMLIEGGSLAIYNAYDRRLLAGSIIADRMRASVRNELGYTIS--------------- 210
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
+P +V GL+ +LP+KK+K LGGKLG + + G TT G+ + L
Sbjct: 211 --------VIPPRAVPGLMKALPLKKIKLLGGKLGEEMTKKWGCTTAGEAQQIPHAALVA 262
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
+G GT+ W +G+ E+VQ + L KS + KSF A+ +A ++ WL+ L +L
Sbjct: 263 CFGDRLGTYAWKAVQGLKAEQVQVKDLVKSMLASKSF---GAINELAGIRRWLSVLSHDL 319
Query: 282 SERLCSDLEQNKRIAHTLTLH--ASAFKSSDSDSR 314
+ R+ D E N+R L+ + FK+S SR
Sbjct: 320 AIRMSRDFEMNQRQPKVFQLYYRSGKFKNSADHSR 354
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 14/289 (4%)
Query: 25 VARGKADLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAMLAETPPES 79
+A K L YR +++++ + + E+A IDEV+LDL+ A+L E PE
Sbjct: 121 IATDKVSLDPYRLESRRILAVIKEHLPSHLQKVEKAGIDEVFLDLSAHVHAVLLERFPEL 180
Query: 80 LDEVDEEALKSHILGLESKDGNDSKATV-----KEWLCRCDADHRDKLLACGVLIVTELR 134
+ H L + D KA +E D D D IV +R
Sbjct: 181 AGGPPDGDPFEH-LPMPPVSALDWKADALIDLDEERAEFDDPDWDDVAFLVASEIVRNIR 239
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 194
+ + + +TC+AGIA NK+L+KL S KP QQT + +V+ L K + LGGK
Sbjct: 240 VAIRDKLRYTCAAGIAKNKLLSKLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGK 299
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 254
LG + +V +LL S D+L+ +G TG W++N RG EV +R KS S
Sbjct: 300 LGEQVSQTFKTESVQELLAVSIDQLKSKFGAETGAWVYNTLRGYDTSEVNSRTQIKSMLS 359
Query: 255 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KSF ++ TV WL ++ RL + + +NKR T+ LH
Sbjct: 360 AKSFRP--SINTVDQAMKWLRIFAADIFARLVDEGVLENKRRPKTINLH 406
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 159/336 (47%), Gaps = 37/336 (11%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI------------LARKG-- 50
+AK+ CP + V R D +YR N ++ VS+ L R+
Sbjct: 220 DAKKACPDLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALVREHLP 279
Query: 51 ----RCERASIDEVYLDLTDAAEAMLA------ETPPESLDEVDEEALKSHILGLESKDG 100
R E+AS+DEV+LDL+ ++L + PP D + L S + L+ +
Sbjct: 280 QNLQRVEKASVDEVFLDLSAQVHSILLDRFPELQQPPPYNDPTERLPLPS-VSALDWQ-- 336
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E D D D + G IV LR ++ + +TCSAG+A NK+L+KL S
Sbjct: 337 ADALVDLDEEREGQDPDWDDVAILVGSEIVRGLRSEIRERMRYTCSAGVACNKLLSKLGS 396
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
G KP +QT V +V L + K++ LGGKLG + + G V DLL S ++L+
Sbjct: 397 GFKKPNRQTVVRNRAVGIFLHEFKLTKIRNLGGKLGEQVVSIFGTEKVEDLLPVSVEQLK 456
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G TG WL+N RG+ EV R +S S KSF P + T WL +
Sbjct: 457 AKLGEETGVWLYNTIRGVDTSEVNPRTQLRSMLSAKSF-RPH-INTQEQADRWLRIFVGD 514
Query: 281 LSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 315
+ RL + + +NKR T+H SA ++ + SR+
Sbjct: 515 IFNRLVEEGVLENKR--RPKTIHLSARHATQTRSRQ 548
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 149/322 (46%), Gaps = 33/322 (10%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSIL----- 46
EAK++CP + V +A K L YR ++++++
Sbjct: 96 EAKKLCPDLIAQHVATWREGDDKWAYRDDAAASIATDKVSLDPYRLESRKILALIRDTLP 155
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 101
+ E+ASIDEV+LDL+ +L E PE D++ E I L+ K
Sbjct: 156 PNLQKVEKASIDEVFLDLSAHVHTILLERFPELSNPPPYDDLAERLPLPSIAALDWK--A 213
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
D+ + E D D D + G IV +R QV +TCSAGIA+NKM++KL SG
Sbjct: 214 DALVDLDEDQESQDPDWDDVAILIGSEIVRNVRAQVRGRLGYTCSAGIANNKMVSKLGSG 273
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP QT V +V L + K++ LGGKLG + + ++ DLL+ S + ++
Sbjct: 274 FKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKLGERVVSTYSTQSIKDLLEVSLEHMKS 333
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
G TG+WL + RGI EV +R KS S KSF ++ T WL ++
Sbjct: 334 KLGDETGSWLHDTLRGIDNSEVSSRTQIKSMLSAKSFRP--SISTEEQALKWLRIFVGDI 391
Query: 282 SERLCSD-LEQNKRIAHTLTLH 302
RL + + N+R ++ LH
Sbjct: 392 FSRLGEEGVLDNRRRPRSINLH 413
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 155/323 (47%), Gaps = 35/323 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVSI-----LARK---------- 49
EAK++CP++ V R D +YR N ++ VS+ +RK
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYRDDAAANIATDKVSLDPYRLQSRKILALVKDSLP 154
Query: 50 ---GRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 100
+ E+ASIDEV+LDL+ + L +PP S D + S L+ +
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVHSELLRRFPELSSPPPSGDVAESLPFPS-AAALDWR-- 211
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
ND+ + E D D D ++ G IV +R ++ ++ +TCSAGIA+NK+++KL S
Sbjct: 212 NDNLVVLDEDQETLDPDWDDVVILLGSEIVRGVRAEIREKLGYTCSAGIANNKLVSKLGS 271
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP QT V +V L + + KM+ LGGKLG + + G +V +L D+++
Sbjct: 272 AFKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSTFGTESVKELRDIPLDQIK 331
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G T WL+N RGI EV +R KS S KSF ++KT WL +
Sbjct: 332 AKLGDETAVWLYNTIRGIDLSEVNSRTQIKSMLSAKSFRP--SIKTPEQGIKWLRIFAGD 389
Query: 281 LSERLCSD-LEQNKRIAHTLTLH 302
+ RL + + ++KR T+ LH
Sbjct: 390 IYSRLVEEGILEHKRWPRTINLH 412
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 176/412 (42%), Gaps = 48/412 (11%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC-- 52
EAK++CP++ V R D +YR N ++ VS ILA C
Sbjct: 95 EAKKLCPELIAQHVATWREGDDKWAYREDAAANIATDKVSLDPYRLQSRRILALIKDCLP 154
Query: 53 ------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDG----ND 102
E+ASIDEV+LDL+ L PE L + L S D
Sbjct: 155 KDLQKVEKASIDEVFLDLSAQVHTELLRRFPE-LSTAPSSGDSAQHLPFPSAAALDWQTD 213
Query: 103 SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
+ ++E D D D ++ G IV +R Q+ + +TCSAGIA++K+++KL S
Sbjct: 214 NLVVLEEEQEALDPDWDDVVMLVGSEIVRGVRAQIRERLGYTCSAGIANSKLVSKLGSAY 273
Query: 163 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 222
KP QT V +V L + + KM+ LGGKLG + + +V +L D+++
Sbjct: 274 KKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKLGDQVVSIFNTESVKELRDIPLDQIKAK 333
Query: 223 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 282
G T WL+N RG+ EV +R KS S KSF ++ T WL ++
Sbjct: 334 LGDETAVWLYNTIRGVDHSEVNSRTQIKSMLSAKSFRP--SINTPEQAIKWLRIFAGDIY 391
Query: 283 ERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 341
RL + + ++KR T+ LH + SK P+ G A ++ FNL +
Sbjct: 392 SRLVEEGILEHKRWPRTINLHHRHAGQTR--------SKQSPISPGKALDEQALFNLAKD 443
Query: 342 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDK 393
L + + V W LS+S + G +I +F D+
Sbjct: 444 LLHQIMAEGDV---------WPCANLSLSVGGFEEGVKGNMAIGAFFKKRDE 486
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 152/323 (47%), Gaps = 33/323 (10%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYR-NAGSEVVS---------ILARK--------- 49
+EAK++CP++ + V R D +YR +A + + + + +RK
Sbjct: 98 EEAKKLCPELIVQHVATWREGDDKWAYREDAAAHIATDKVSLDHYRLQSRKILACIKEAL 157
Query: 50 ----GRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDG 100
+ E+ASIDEV+LDL+ +L E PE D+ E I L+ +
Sbjct: 158 PLDLQKVEKASIDEVFLDLSSQTHLILLERFPELSNPPPYDDPTENLPLPSIAALDWQ-- 215
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
D+ + E D D D + G IV ++R +V ++ +TCSAG+A NK+L+KL S
Sbjct: 216 TDALIDLDEEQETVDPDWDDVAILIGSEIVRKVRAEVRQKLGYTCSAGVASNKLLSKLGS 275
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP +QT V +V + I K++ LGGKLG + + +V +LL ++
Sbjct: 276 AYKKPNKQTVVRNRAVSAFMAGFKITKLRNLGGKLGEQIVSTFNTESVIELLDVPLATMK 335
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
G +T W++N RGI EV +R KS S KSF + + WL +
Sbjct: 336 TKLGHDTSFWIYNTIRGIDTSEVNSRTQIKSMLSAKSFRP--TINSSEQATRWLRIFAAD 393
Query: 281 LSERLCSD-LEQNKRIAHTLTLH 302
+ RL + + +NKR T+ LH
Sbjct: 394 IFARLVEEGVLENKRRPRTMNLH 416
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 157/356 (44%), Gaps = 41/356 (11%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 110
R E+A IDEV++DL+ L E P + E + + G TV EW
Sbjct: 169 RVEKAGIDEVFVDLSALVYETLLEWYPMLREGEVELDVNERLPG--------PPTTVLEW 220
Query: 111 -----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
L D D D + G IV +R + + ++TCSAGIA NKM+AK
Sbjct: 221 GKEDMLVDLDVGEAEEDDPDWDDMCMLVGADIVRSVRAAIWERLKYTCSAGIARNKMMAK 280
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L S NKP +QT V +++ L +++ LGGKLG + G VGDLL+ +
Sbjct: 281 LGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLGKQVSATFGTEEVGDLLRIPIE 340
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
+L+ G +TGTWL+ I RG EV R KS S KSF ++K+ + WL
Sbjct: 341 QLKLKLGDDTGTWLYEIIRGYEYSEVSTRTKIKSMLSTKSFRP--SIKSSGQAEKWLRIF 398
Query: 278 CEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTF 336
++ RL + + +NKR +T+H ++ + S+ P+ G F
Sbjct: 399 VADIYGRLLEEGVLENKRRPKVVTIHHR--------TKGQTRSRQIPIPPGRPMSDTMLF 450
Query: 337 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
+L + L + + + W LS++ S L+G S+ +F D
Sbjct: 451 DLAKTLLAQVVNEGNI---------WPCANLSLNVSGFEDGLTGNRSLDSFFGRGD 497
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 150/329 (45%), Gaps = 46/329 (13%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS---------------ILARKGRC-- 52
EAK++CP + V R + +Y N + ++ ILA C
Sbjct: 98 EAKKLCPDLICQHVATWREGDEKWAYHNDAFKNIATHKVSLDPYRLESKRILACIKDCLP 157
Query: 53 ------ERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK--- 98
E+AS+DEV++DL+ A L E PE D++ E+ L+ K
Sbjct: 158 KHLQIVEKASVDEVFMDLSAQIHATLLERYPELKGPAPYDDLTEQLPLPPTTFLDWKADA 217
Query: 99 ----DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
D N+++ D D D + G IV +R + ++ ++TCSAG+A NKM
Sbjct: 218 LVDLDKNEAETD--------DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGVAQNKM 269
Query: 155 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
L+KL S KP QQT + +++ L K++ LGGK G + V DLL
Sbjct: 270 LSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLV 329
Query: 215 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 274
++L++ G TGTW++N+ RGI +V +R KS S KSF ++ T WL
Sbjct: 330 PVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWL 387
Query: 275 NQLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR T+ LH
Sbjct: 388 RIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|353235092|emb|CCA67110.1| related to DNA polymerase eta [Piriformospora indica DSM 11827]
Length = 615
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 56/435 (12%)
Query: 10 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK---G 50
+AK++CP + +V V + K L YR ++++++
Sbjct: 92 DAKKMCPNLVVVHVATYKDGESEPKYHPDPNNKTHKVSLDLYRRESNKILNVFKTTLPTA 151
Query: 51 RCERASIDEVYLDLTDAAEAMLAE-------TPPESLDEVDE---------EALKSHI-- 92
E+ASIDE ++D T + +L E PP+S +D E KS +
Sbjct: 152 EIEKASIDESFVDFTRPIQQILLERYPELASPPPDSPLNLDTPLPPPPARLEWHKSSVWV 211
Query: 93 -LGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
+ E++ G +S ++ A D L+ ++ R ++ + +T SAGIA
Sbjct: 212 PVNPEAEKGTESSEGPQQEQDSTPATWHDVALSIAAELLDNTRREIRETLGYTTSAGIAR 271
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
NK LAKL + KP Q+ + +++ L LP +K++ LGGKLGT L E TVG+L
Sbjct: 272 NKFLAKLVASYKKPNSQSVLRNAAIPNYLRPLPFQKIRFLGGKLGTILAEEYEAKTVGEL 331
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASV 270
L ++Q +G + W++ + RGI EV+ + + KS + K+ P P ++ V
Sbjct: 332 LYIDLAEMQRKFGPES-LWVYQVFRGIDIGEVKEKPPVNKSMLASKNLPKP--IRQDGDV 388
Query: 271 QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK 330
W+ LC EL+ RL E T+ LH ++ DS S+ SK P +
Sbjct: 389 LQWVRVLCSELAVRLLEARETGTVWPKTIALHTK--QAGDSASK----SKQTPFPF---- 438
Query: 331 IQEDTFNLFQAGL----REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMK 386
+++ T ++ A + +E S + + +I ++VS + + + G +I
Sbjct: 439 VRDLTGDVIVAAVMKLWKELHTSDAERAANPNVPKMKIINIAVSFNGVETLEQGQRNIAG 498
Query: 387 YFNGPDKFGSTSEQL 401
+F GP G++S +L
Sbjct: 499 FFGGPASKGASSSKL 513
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 181/412 (43%), Gaps = 53/412 (12%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC- 52
D+A ++CP++++ V R + +YR N ++ VS ILA C
Sbjct: 102 DDALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILALIKECL 161
Query: 53 -------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 105
E+ASIDEV++DL+ + L E PE L A L L D +A
Sbjct: 162 PPHQCKVEKASIDEVFIDLSANVHSKLIERFPE-LASPPPGADAQARLPLPPVSALDWQA 220
Query: 106 TVKEWLCRC-----DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
L D D D L I ++R + ++TCSAG+A NK+L+KL S
Sbjct: 221 DALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGS 280
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP QQT + +V+ L K++ LGGKLG + G +V DLL+ D+L+
Sbjct: 281 AHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVPLDQLK 340
Query: 221 ESYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCE 279
G +T W++N RGI EV +R KS S KSF ++ +V WL
Sbjct: 341 LRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWLRIFSA 398
Query: 280 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT--F 336
++ RL + + +NKR T+ LH S ++SCP+ G ++ +D+ +
Sbjct: 399 DIFSRLVEEGVLENKRRPKTMNLHHRHNGQSK--------ARSCPIPQGV-RVLDDSVLY 449
Query: 337 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
L Q LR+ + V W LS++ S ++G I +
Sbjct: 450 ELAQNLLRQIVMEGKV---------WPCDNLSLNVSGFEDGITGNMGIGGFL 492
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 153/328 (46%), Gaps = 41/328 (12%)
Query: 10 EAKEVCPQIELVQVP---------------------VARGKADLSSYRNAGSEVVSIL-- 46
EAKE CP+I V ++ K L YR ++++++
Sbjct: 96 EAKEKCPEIICQHVATWKAGDTKWSYELNGADAGREISSRKVSLDPYRIQSRKILALIKE 155
Query: 47 ---ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESK 98
A + + E+ASIDEV+LDL+ ++L E PE D+ E + L+
Sbjct: 156 FLPADRQKVEKASIDEVFLDLSAHVHSLLLERYPELRGPPPYDDPSEPLPRPPTTALDW- 214
Query: 99 DGNDSKATVKEWLCRCDADHRDKLLACGVL---IVTELRMQVLKETEFTCSAGIAHNKML 155
DS + + + D D C ++ IV ++R V + +TCSAGI+ NKML
Sbjct: 215 -AADSLVDLDS--SQTEEDEPDWDDVCALIASEIVRDVRKAVFDQLHYTCSAGISKNKML 271
Query: 156 AKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 215
AKL +G +KP QT + +V+ L K++ LGGKLG L V ++LK
Sbjct: 272 AKLGAGHHKPNGQTVIRNRAVQQFLSGFKFTKIRNLGGKLGDELVAAFNTDLVSEMLKVP 331
Query: 216 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLN 275
++L++ +G +TG+WL++ RG EV R KS S KSF ++ + WL
Sbjct: 332 LEQLKKQFGDDTGSWLYSTFRGEDTSEVNPRTQIKSMLSAKSFRP--SINSFEVACKWLR 389
Query: 276 QLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR T+ LH
Sbjct: 390 IFVADIFSRLVEEGVLENKRRPKTINLH 417
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 163/410 (39%), Gaps = 92/410 (22%)
Query: 10 EAKEVCPQIELVQVPV--ARGKA------DLSS---------------YRNAGSEVVSIL 46
EAK CP+ LV V A G+ DLS YR ++ IL
Sbjct: 72 EAKSKCPECVLVHVETVDAAGRKPQVSELDLSEEASIVRAANTVCLDRYRLESEKIFGIL 131
Query: 47 AR-KGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 105
+R ER SIDE +++LTD +D+ DE
Sbjct: 132 SRFSDAVERCSIDEAFIELTDV------------VDDFDE-------------------- 159
Query: 106 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
V +V +R +L E +TCSAG+A NKMLAK AS NKP
Sbjct: 160 --------------------AVRLVQRMRDAILDELRYTCSAGVACNKMLAKFASSTNKP 199
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+ T +P+S +L +P+ +++ LGGK G LQ T+ DL + S LQ +Y
Sbjct: 200 NKLTAIPWSETNSILARIPLSRVRGLGGKFGAELQRNFKAETLADLSQLSMAALQAAYEP 259
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
T WL+ +ARG V+ R P+S + KSF + T + L L L +R+
Sbjct: 260 CTAEWLFWLARGYDPSRVEPRDRPRSLLAAKSFA---PVDTWQDARRILFLLATRLEQRI 316
Query: 286 CSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLRE 345
D + R TL + ++ ++ R S+S P +ED G +
Sbjct: 317 ERDTSMHHRRPRTLCVSFTSAQAGLQGQRHHHASRSGPF---PTCAKEDAAASIAEGAEK 373
Query: 346 FLGSFGVKTQGSHYSGWRITA--LSVSASKIVPVLSGTCSIMKYFNGPDK 393
L S SG+R + A+ P+ SG SI Y P K
Sbjct: 374 LLRSI--------RSGFRFPCKRFMLEATNFQPIASGAYSIRSYMGKPGK 415
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 139/299 (46%), Gaps = 35/299 (11%)
Query: 25 VARGKADLSSYRNAGSEVVSILA-----RKGRCERASIDEVYLDLTDAAEAMLAET---- 75
+A K L YR +++ + ++ R E+ASIDEV++DL+ +L E
Sbjct: 132 MATHKVSLDPYRKESRKILKCIKDILPEKEQRVEKASIDEVFMDLSAQVHTILLERYPEL 191
Query: 76 --------PPESLDEVDEEAL---KSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
P E L +V L ++G +DG D D D D +
Sbjct: 192 RGPAPYDDPTEPLPKVPTTVLDWAADALVGTGEEDGEDR-----------DPDWDDVCMV 240
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
IV ++R + +TCS G+A NKMLAKL SG KP QQT + +VK L +
Sbjct: 241 IASEIVRDVRKHIKDTLGYTCSGGVARNKMLAKLGSGYKKPNQQTVIRNRAVKNFLSDMK 300
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG + + G V DL++ D+L++ G +TG+WL++ RG EV
Sbjct: 301 FTKIRMLGGKLGDEVVSTFGTDKVRDLMEQPLDQLKK-LGEDTGSWLYSTIRGEDNSEVN 359
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
R KS S KSF ++ + WL ++ R + + +NKR ++ LH
Sbjct: 360 PRTQIKSMLSAKSFRP--SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 150/335 (44%), Gaps = 60/335 (17%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 48
EA+++CP L V +A K L YR ++++ +
Sbjct: 97 EARKLCPDAILQHVATWKEGDVKWAYHKDASANMATHKVSLDPYRLESRKILACMKECLP 156
Query: 49 --KGRCERASIDEVYLDLTDAAEAMLAE------TPPESLDEVDEEALKSHILGLESKDG 100
R E+A IDEV+LDL+ +L + +PP+ L E L L
Sbjct: 157 PDLQRVEKAGIDEVFLDLSAQVHTILLDRYPELSSPPKDLSE---------FLPL----- 202
Query: 101 NDSKATVKEW----LCRCDADHRDKL--------LACGVLIVTELRMQVLKETEFTCSAG 148
TV +W L DA + + G IV ++R V ++ ++TCS G
Sbjct: 203 --PPTTVLDWQADALVDLDASETEDDDPDWDDVAILLGSEIVRDVRAAVSEQLKYTCSGG 260
Query: 149 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTV 208
IAHNKML+KL S KP QQT + +++ L K++ LGGKLGT + + TV
Sbjct: 261 IAHNKMLSKLGSAHRKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGTQIVDTFETDTV 320
Query: 209 GDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVA 268
LL+ ++L++ G TG+W++ RGI EV +R KS S KSF ++ +
Sbjct: 321 SGLLEVPVERLKQKLGDETGSWVYQTIRGIDQSEVNSRTQIKSMLSAKSFQP--SINSRE 378
Query: 269 SVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
WL ++ RL + + +NKR T+ LH
Sbjct: 379 QASRWLRIFVGDIYARLVEEGVLENKRRPKTINLH 413
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 169/371 (45%), Gaps = 44/371 (11%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC- 52
D+A ++CP++++ V R + +YR N ++ VS ILA C
Sbjct: 113 DDALKLCPELQVQHVATWREGDNTWAYRGDAAANIATDKVSLDPYRLQSRTILALIKECL 172
Query: 53 -------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA 105
E+ASIDEV++DL+ + L E PE L A L L D +A
Sbjct: 173 PPHQCKVEKASIDEVFIDLSANVHSKLIERFPE-LASPPPGADAQARLPLPPVSALDWQA 231
Query: 106 TVKEWLCRC-----DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
L D D D L I ++R + ++TCSAG+A NK+L+KL S
Sbjct: 232 DALIELDETETETDDPDWDDIALLIASEITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGS 291
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
KP QQT + +V+ L K++ LGGKLG + G +V DLL+ D+L+
Sbjct: 292 AHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLGDQVVAAFGTESVSDLLEVPLDQLK 351
Query: 221 ESYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCE 279
G +T W++N RGI EV +R KS S KSF ++ +V WL
Sbjct: 352 LRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSAKSFRP--SIHSVDQANKWLRIFSA 409
Query: 280 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT--F 336
++ RL + + +NKR T+ LH S ++SCP+ G ++ +D+ +
Sbjct: 410 DIFSRLVEEGVLENKRRPKTMNLHHRHNGQSK--------ARSCPIPQGV-RVLDDSVLY 460
Query: 337 NLFQAGLREFL 347
L Q LR+ +
Sbjct: 461 ELAQNLLRQIV 471
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 138/295 (46%), Gaps = 35/295 (11%)
Query: 29 KADLSSYRNAGSEVVSILA-----RKGRCERASIDEVYLDLTDAAEAML----------- 72
K L YR A +++ + ++ R E+ASIDEV++DL+ +L
Sbjct: 137 KVSLDPYRQASRKILQCIKEALPEKEQRVEKASIDEVFMDLSAQVHTILLDRYPELRGPA 196
Query: 73 -AETPPESLDEVDEEAL---KSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E P E L +V AL ++ +DG D+ D D D +
Sbjct: 197 PYEDPTERLPKVPTTALDWAADALVETGEEDGEDA-----------DPDWDDVCMVIASE 245
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
IV E+R + +TCSAG+A NKML+KL SG KP QQT + +VK L + K+
Sbjct: 246 IVREVRRHIKDTLGYTCSAGVARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLGDMKFTKI 305
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ LGGKLG + G V DL+ ++L++ G +TGTWL++ RG EV R
Sbjct: 306 RMLGGKLGDEVVAMFGTDKVRDLMDQPLEQLKK-LGDDTGTWLYSTIRGEDNSEVNPRTQ 364
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF ++ + WL ++ R + + +NKR T+ LH
Sbjct: 365 IKSMLSAKSFRP--SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKTINLH 417
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 182/413 (44%), Gaps = 53/413 (12%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILARKGRC- 52
DEA+++CP++ V R D +YR N G++ VS ILA C
Sbjct: 104 DEARKLCPELICQHVATWREGDDKWAYRDDAAANIGTDKVSLDPYRLQSRRILALIKECL 163
Query: 53 -------ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEE-------ALKSHILGLESK 98
E+AS+DEV++DL+ +L E PE + S +L +S
Sbjct: 164 PPTQCKVEKASVDEVFIDLSANVHTVLLERFPELAATAPRQDPFENLPPPSSTVLDWQSD 223
Query: 99 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 158
+ D E D D D +L IV +R+ V + +TCSAG+A NK+L+KL
Sbjct: 224 NLVDLDEVEAE---TDDPDWDDVVLLLASEIVRNIRLAVRERLGYTCSAGVASNKLLSKL 280
Query: 159 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 218
S KP QQT + SV L L K++ LGGKLG + G +V +LL +
Sbjct: 281 GSAHRKPNQQTVIRNRSVHHFLSDLKFTKIRNLGGKLGEQVVEAFGSDSVSELLAAPLEL 340
Query: 219 LQESYGFNTGTWLWNIARG-ISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQ 276
L+ G +GTW+++I RG +GE V +R KS S KSF P + AS WL
Sbjct: 341 LKAKLGAESGTWVYHIIRGDDAGEPVNSRTQIKSMLSAKSFRPSINRPEQAAS---WLRI 397
Query: 277 LCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDT 335
++ RL + + +NKR T+ LH + S+SC + G A ++
Sbjct: 398 FAADIFARLIEEGVLENKRRPRTMNLHHRNVGQTR--------SRSCQIPQGKALDEQVL 449
Query: 336 FNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ L Q LR+ + G + W LS+ + ++G I +
Sbjct: 450 YELAQTLLRQIVAEAGSE------RAWSCDNLSLQVAGFEDGITGNMGIGGFL 496
>gi|355712653|gb|AES04421.1| polymerase , eta [Mustela putorius furo]
Length = 222
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 108/192 (56%), Gaps = 14/192 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR----KGRCERASI 57
V SM D+AK++CP + L QV +RGKADL+ YR A EV+ +++R ERASI
Sbjct: 31 VTRSMWADDAKKLCPDLLLAQVRESRGKADLTKYREASVEVMGVMSRFAVIDAVIERASI 90
Query: 58 DEVYLDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EW 110
DE Y+DLT A + L + P S D + ++ G + +G D K + +W
Sbjct: 91 DEAYIDLTGAVQERLQKLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQGLFQW 150
Query: 111 LCRCDADHR---DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
L D+ D L G +IV E+R + KET F CSAGI+HNK+LAKLA G+NKP +
Sbjct: 151 LDSLQIDNPTSPDLQLTVGAVIVEEMRAAIEKETGFQCSAGISHNKVLAKLACGLNKPNR 210
Query: 168 QTTVPFSSVKGL 179
QT V SV L
Sbjct: 211 QTLVSHGSVPQL 222
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 160/355 (45%), Gaps = 42/355 (11%)
Query: 3 VSSM-RGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI 45
+S M R +AK+ CP++ V V + K L YR +++++
Sbjct: 95 ISRMDRVKDAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINM 154
Query: 46 LARK---GRCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHILG- 94
G E+ASIDE ++D T LAE P ++ + +D +
Sbjct: 155 FKENLPGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISW 214
Query: 95 -----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETE----FTC 145
L ++S E L R + D + I EL Q+ KE +T
Sbjct: 215 NAIGFLVPVTPSESAGNEGEELLRGEDDDSTTWHDVALSIAAELMDQIRKEVHTKLGYTT 274
Query: 146 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 205
SAGI+ NK LAKL + KP Q+ + +++ L LP +K++ LGGKLG +L E V
Sbjct: 275 SAGISRNKFLAKLCASYKKPNSQSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAKEYDV 334
Query: 206 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRAL 264
+TVGDLL S +++Q +G N+ W++ + RGI EV+ + + KS + K+ P P +
Sbjct: 335 STVGDLLTISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAMFKSMLASKNLPKP--I 391
Query: 265 KTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 318
+ HWL L EL+ RL E + + T+ LHA + + FP
Sbjct: 392 TNPSEGHHWLRVLAAELALRLKDSREASPNLWPKTIVLHARKGYETARSKQASFP 446
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 46/329 (13%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 48
EAK++CP + V +A K L YR +++ +
Sbjct: 40 EAKKLCPDLICQHVATWREGDEKWAYHDDAFKNIAIHKVSLDPYRLESRRILACIKDCVP 99
Query: 49 --KGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEE-------ALKSHILG 94
R E+AS+DEV++DL+ A+L E PE D++ E+ L
Sbjct: 100 NDLQRVEKASVDEVFMDLSSQVHAILLERYPELQGPAPYDDLTEQLPLPPTTVLDWKADA 159
Query: 95 LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
L D ++++ D D D + G IV +R + ++ ++TCSAGIA NKM
Sbjct: 160 LVDLDTDETETD--------DPDWDDIAMLIGSEIVRTVRAAIREKLKYTCSAGIAQNKM 211
Query: 155 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
L+KL SG KP QQT + +V+ L K++ LGGK G + V DLL
Sbjct: 212 LSKLGSGHKKPNQQTVIRNRAVQQFLSGFKFTKIRNLGGKTGEEVVKLFNTDMVNDLLLV 271
Query: 215 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 274
+ L++ G TGTW+ N+ RG +V +R KS S KSF ++ T WL
Sbjct: 272 PMEHLKQKLGEETGTWVHNVIRGNDTSDVNSRTQIKSMLSAKSFRP--SINTPEQANRWL 329
Query: 275 NQLCEELSERLCSD-LEQNKRIAHTLTLH 302
++ RL + + +NKR T+ LH
Sbjct: 330 RIFVADIHSRLVEEGVLENKRRPKTINLH 358
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 131/274 (47%), Gaps = 40/274 (14%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-------S 103
R E+A IDEV++DL+ A++ ET L H + E + G D
Sbjct: 237 RVEKAGIDEVFVDLS----ALVYET-----------LLDRHPMLREGEVGRDMSERLPRP 281
Query: 104 KATVKEW-----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
TV EW L DA D D + G IV +R + + ++TCSAGIA
Sbjct: 282 PTTVLEWGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIA 341
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
NKM+AKL S NKP +QT V +V+ L +++ LGGKLG + G VG
Sbjct: 342 RNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGG 401
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVAS 269
LL ++L+ G +TGTWL+ + RG EV R KS S KSF PG +++
Sbjct: 402 LLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQ 458
Query: 270 VQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ WL ++ RL + + +NKR +T+H
Sbjct: 459 AEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 492
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 140/299 (46%), Gaps = 35/299 (11%)
Query: 25 VARGKADLSSYRNAGSEVVSILA-----RKGRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR +++ + ++ R E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRKESRKILKCIKDMLPEKEQRVEKASIDEVFMDLSAQVHTILLERYPEL 191
Query: 79 ----SLDEVDEEALKSHILGLE----------SKDGNDSKATVKEWLCRCDADHRDKLLA 124
D+ E K L+ +DG D D D D +A
Sbjct: 192 RGPAPYDDPTEPLPKVPTTVLDWAADALVETGEEDGEDR-----------DPDWDDVCMA 240
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
IV ++R + +TCS G+A NKMLAKL SG KP QQT + +VK L +
Sbjct: 241 IASEIVRDVRKHIKDALGYTCSGGVARNKMLAKLGSGYKKPNQQTVIRNRAVKHFLSDMK 300
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG + + G V DL++ D+L++ G +TG+WL++I RG EV
Sbjct: 301 FTKIRMLGGKLGDEVVSIFGTDKVKDLIEQPLDQLKK-LGDDTGSWLYSIIRGEDNSEVN 359
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
R KS S KSF ++ + WL ++ R + + +NKR ++ LH
Sbjct: 360 PRTQIKSMLSAKSFRP--SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 131/274 (47%), Gaps = 40/274 (14%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-------S 103
R E+A IDEV++DL+ A++ ET L H + E + G D
Sbjct: 238 RVEKAGIDEVFVDLS----ALVYET-----------LLDRHPMLREGEVGRDMSERLPRP 282
Query: 104 KATVKEW-----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
TV EW L DA D D + G IV +R + + ++TCSAGIA
Sbjct: 283 PTTVLEWGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIA 342
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
NKM+AKL S NKP +QT V +V+ L +++ LGGKLG + G VG
Sbjct: 343 RNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGG 402
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVAS 269
LL ++L+ G +TGTWL+ + RG EV R KS S KSF PG +++
Sbjct: 403 LLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQ 459
Query: 270 VQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ WL ++ RL + + +NKR +T+H
Sbjct: 460 AEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 493
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 131/274 (47%), Gaps = 40/274 (14%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK------ 104
R E+A IDEV++DL+ A++ ET L H + E + G D
Sbjct: 182 RVEKAGIDEVFVDLS----ALVYET-----------LLDRHPMLREGEVGRDMSERLPRP 226
Query: 105 -ATVKEW-----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
TV EW L DA D D + G IV +R + + ++TCSAGIA
Sbjct: 227 PTTVLEWGKEDMLVDLDAGQAEEDDPDWDDVCMLIGADIVRSVRATIWERLKYTCSAGIA 286
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
NKM+AKL S NKP +QT V +V+ L +++ LGGKLG + G VG
Sbjct: 287 RNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLGKQVAAIFGTDEVGG 346
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVAS 269
LL ++L+ G +TGTWL+ + RG EV R KS S KSF PG +++
Sbjct: 347 LLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTKSFRPG---IQSSTQ 403
Query: 270 VQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ WL ++ RL + + +NKR +T+H
Sbjct: 404 AEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 437
>gi|302419901|ref|XP_003007781.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
gi|261353432|gb|EEY15860.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
Length = 631
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 20/301 (6%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 69
EA+++CP + V R D +YR+ + ++ ++ S+D L +
Sbjct: 97 EARKLCPDLIAQHVATWREGDDKWAYRDDAAANIT-------SDKVSLDPYRLQ-SRKIL 148
Query: 70 AMLAETPPESLDEVDEEA-------LKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
A++ ET P L +V++ + L ++ L+ + D+ + E D D D
Sbjct: 149 ALIKETLPSDLQKVEKASIDEVFCYLGPPVVALDWQ--ADALIDLDEDAENQDPDWDDVA 206
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ G I+ +R ++ + +TCSAGIA+NKML+KL S KP QQT + +V+ L
Sbjct: 207 ILIGSEIIRGVRARIHEVLHYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNRAVQQFLSD 266
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
K++ LGGKLG ++ N TV DLL D+++ G TG W++N RGI E
Sbjct: 267 FKFTKIRNLGGKLGDTIVNTFNTDTVKDLLPTPLDQMKARLGDETGIWVYNTIRGIDQSE 326
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTL 301
V +R KS S KSF ++ T WL ++ RL + + +NKR T+ L
Sbjct: 327 VNSRTQIKSMLSAKSFRP--SIHTPDQGNRWLRIFVADIFSRLVEEGVLENKRRPKTINL 384
Query: 302 H 302
H
Sbjct: 385 H 385
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 144/307 (46%), Gaps = 42/307 (13%)
Query: 18 IELVQVPVARGKADL-SSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETP 76
+++++ ++R ADL R GS+ + E+ASIDEV++DL+ +L +
Sbjct: 562 LQVMKEELSRWHADLLDDERGLGSQ---FQVEQAALEKASIDEVFIDLSPLVYGVLLQRY 618
Query: 77 PESLDEVDEEALKSHILGLESKDGNDSKA-------TVKEWLCR-C------------DA 116
PE L++ + G+D A T EW C D
Sbjct: 619 PE---------LRA------APQGDDKFASLPRPPTTALEWNAEDCLVDLDKTETEVDDP 663
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
D D + G +V LR + + ++TCSAGIA NKM+AKL S NKP +QT V +V
Sbjct: 664 DWDDIAMLVGSEVVRSLRTALWNKLQYTCSAGIARNKMMAKLGSSSNKPNKQTIVRNRAV 723
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
+ L K++ LGGKLG + G VGDLL+ ++L+ +T WL+ I R
Sbjct: 724 QNFLGGFKFTKIRMLGGKLGDQVTALFGTEQVGDLLQVPLEQLRAKLDDDTALWLYGIIR 783
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRI 295
G EV R KS S KSF ++ +V + WL ++ RL D + +N+R
Sbjct: 784 GEDRSEVNPRTQIKSMLSAKSFRP--SINSVEQAEKWLRIFAADIYGRLVEDGVLENRRR 841
Query: 296 AHTLTLH 302
T+ LH
Sbjct: 842 PRTIALH 848
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 129/256 (50%), Gaps = 19/256 (7%)
Query: 41 EVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIL------G 94
+VV + + + E+ASIDEV++DL+ A+L + PE L + + K+ L
Sbjct: 168 DVVPLEFQGAKVEKASIDEVFIDLSSLVYAILYQRYPE-LRKPHSTSDKTTRLPSPPTTA 226
Query: 95 LE--SKDGN---DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGI 149
LE S+DG D + T ++ D D D + G I+ +R + + +TCSAGI
Sbjct: 227 LEWSSEDGLVDLDEQETEED-----DPDWDDVAMLIGAEIIRSIRSAIWDKLSYTCSAGI 281
Query: 150 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVG 209
A NKM++KL S NKP +QT + +++ L +++ LGGKLG ++ E G V
Sbjct: 282 ARNKMMSKLGSAQNKPNKQTIIRNRAIQNFLGGFQFTRIRMLGGKLGEQIRAEFGTEQVK 341
Query: 210 DLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS 269
+LL S ++ + +T WL+NI RGI EV R KS S KSF ++ +
Sbjct: 342 ELLNISVEQFKAKLDDDTAVWLYNIIRGIDDSEVNTRTQIKSMLSAKSFRP--SINSADQ 399
Query: 270 VQHWLNQLCEELSERL 285
+ WL +L L
Sbjct: 400 ARKWLRIFAADLYNSL 415
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 149/322 (46%), Gaps = 31/322 (9%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYR-----NAGSEVVS----------ILA------- 47
+AK+ CP + V R D +YR N ++ VS ILA
Sbjct: 99 DAKKACPNLIAQHVATWREGDDKWAYRDDAAANMATDKVSLDPYRLESRRILALVHDHLP 158
Query: 48 -RKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT 106
R E+ASIDEV+LDL+ ++L + PE L + S L + S D KA
Sbjct: 159 QNLQRVEKASIDEVFLDLSAQVHSILLDRFPE-LQQPPPYNDPSERLPMPSVSALDWKAD 217
Query: 107 ----VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
+ E D D D + G IV +LR ++ ++ +TCSAG+A NK+L+KL SG
Sbjct: 218 ALVDLDEDREGEDPDWDDVAILVGSEIVRDLRSEIREKLRYTCSAGVACNKLLSKLGSGY 277
Query: 163 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 222
KP +QT V +V L + K++ LGGKLG + + V DLL ++L+
Sbjct: 278 KKPNRQTVVRNRAVAVFLQDFKLTKIRNLGGKLGEQVVSIFETEQVKDLLPVPVEQLKAK 337
Query: 223 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS 282
G TG WL+N RG+ EV R KS S KSF + T WL ++
Sbjct: 338 LGDETGIWLYNTIRGVDTSEVNPRTQIKSMLSAKSFRP--YINTQDQAIKWLRIFAGDIF 395
Query: 283 ERLCSD-LEQNKRIAHTLTLHA 303
RL + + +NKR T+ L A
Sbjct: 396 NRLVEEGVLENKRRPKTIHLSA 417
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 138/299 (46%), Gaps = 35/299 (11%)
Query: 25 VARGKADLSSYRNAGSEVVS----ILARKG-RCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR +++ IL K R E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRTESRKILKCIKEILPEKDQRVEKASIDEVFMDLSAQVHTILLERYPEL 191
Query: 79 ----SLDEVDEEALKSHILGLE----------SKDGNDSKATVKEWLCRCDADHRDKLLA 124
D+ E K L+ +DG D D D D +
Sbjct: 192 RGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDR-----------DPDWDDVCMV 240
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
IV ++R + +TCS GIA NKML+K+ SG KP QQT + +VK L +
Sbjct: 241 IASEIVRDVRKHIKDTLGYTCSGGIARNKMLSKIGSGYKKPNQQTVIRNRAVKHFLSDMK 300
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG + G V DL++ D+L++ G +TGTW+++I RG EV
Sbjct: 301 FTKIRMLGGKLGDEVVAMFGTDKVKDLVEQPLDQLKK-LGDDTGTWIYSIIRGEDNSEVN 359
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
R KS S KSF ++ + WL ++ R + + +NKR ++ LH
Sbjct: 360 PRTQIKSMLSAKSFRP--SIHSFEQGVRWLRIFVADIFSRCIEEGVLENKRRPKSINLH 416
>gi|358369617|dbj|GAA86231.1| sister chromatid cohesion protein [Aspergillus kawachii IFO 4308]
Length = 670
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 150/353 (42%), Gaps = 74/353 (20%)
Query: 10 EAKEVCPQIELVQVPVAR-------------------GKADLSSYRNAGSEVVSI----L 46
EAK++CP I L V R K L YR +++ + L
Sbjct: 98 EAKKLCPDIILQHVATFREGEGGKWAYRNDAFKRMNTDKVCLDPYRAESRKILKVMKEEL 157
Query: 47 ARKGR-------------------CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEA 87
AR R E+AS+DEV++DL+ +L + PE
Sbjct: 158 ARWHRELVGDEQGASTQSTVQHAGLEKASVDEVFIDLSPLVHGVLLQRFPE--------- 208
Query: 88 LKSHILGLESKDGND----SKATVKEW---LCRCDADHR----------DKLLACGVLIV 130
L++ GL+ D T EW C D D D + G IV
Sbjct: 209 LRA---GLQGDDRVTPLPVPPTTALEWDFEDCLIDLDEHETEVDDPDWDDIAILIGSEIV 265
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
+R V ++TCSAG+A NKM+AKL S NKP +QT V +V+ L K++
Sbjct: 266 RSVRAAVWDRLQYTCSAGVAKNKMMAKLGSACNKPNKQTIVRNRAVQRFLSGYKFTKIRM 325
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 250
LGGKLG + G V DLLK S ++ + +T TWL+ I RG EV +R K
Sbjct: 326 LGGKLGDQVTAMFGTEQVSDLLKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIK 385
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
S S KSF ++ +V WL+ ++ RL D + ++KR T+ LH
Sbjct: 386 SMLSAKSFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPKTVALH 436
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 138/301 (45%), Gaps = 44/301 (14%)
Query: 25 VARGKADL-SSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEV 83
++R ADL R AG++ + E+ASIDEV++DL+ +L + PE
Sbjct: 158 LSRWHADLVDGERGAGAQ---FQIQPASLEKASIDEVFIDLSPLVYGVLLQRYPE----- 209
Query: 84 DEEALKSHILGLESKDGNDSK--------ATVKEWL---CRCDADHR----------DKL 122
L + +D + T EW C D D D
Sbjct: 210 -----------LRAGSQDDDRFTPLPRPPTTALEWNPEDCLIDLDENETEVDDPDWDDIA 258
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ G IV +R V + ++TCS G+A NKM+AKL S NKP +QT V +V+ L
Sbjct: 259 MLIGSEIVRSVRKFVWDKLKYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAVQNFLGG 318
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
K++ LGGKLG + G V DLLK S ++L+ +T +WL+ I RG E
Sbjct: 319 YKFTKIRMLGGKLGDQITASFGTEQVSDLLKVSHEQLRAKLDDDTASWLYGIIRGEDKSE 378
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTL 301
V R KS S KSF ++ +V + WL ++ RL + + +N+R T++L
Sbjct: 379 VNPRTQIKSMLSAKSFRP--SINSVDQAEKWLRIFAADIYGRLVEEGVLENRRRPRTVSL 436
Query: 302 H 302
H
Sbjct: 437 H 437
>gi|303319933|ref|XP_003069966.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109652|gb|EER27821.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 665
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 162/351 (46%), Gaps = 37/351 (10%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIL----------GLESKDG 100
R E+A IDEV++DL+ A L E P L E++ + S L G E +
Sbjct: 203 RIEKAGIDEVFIDLSALVWATLLERYP-MLQEMEVKRQMSERLPRPPTTALDWGKEDELV 261
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
+ + +E D D D ++ G IV +R+ + + +TCSAGIA NKM+AKL S
Sbjct: 262 DLDEGETEE----DDPDWDDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGS 317
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
NKP +QT V +++ L K++ LGGKLG + + V +LL+ ++ +
Sbjct: 318 ACNKPNKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFK 377
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCE 279
+TG WL+ + RG EV R KS S KSF PG + ++ + WL
Sbjct: 378 AKLDDDTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAA 434
Query: 280 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNL 338
E+ RL + + ++KR LT+H S + SR+ P+ G A +E F L
Sbjct: 435 EIYGRLVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFAL 486
Query: 339 FQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 389
+ L++ T H W L+++ S +SG S+ +F
Sbjct: 487 AKDLLKQV-------TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 127/256 (49%), Gaps = 8/256 (3%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEV--DEEALKSHILGLESKDGN--DSKATVK 108
E+AS+DEV++DL+ +L + PE E+ D+ + + + N D +
Sbjct: 183 EKASVDEVFIDLSSLVHGVLLQRYPELRAELQGDDRVTPLPVPPTTALEWNSEDCLVDLD 242
Query: 109 EWLCRCD-ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
E D D D + G IV +R V ++TCSAG+A NKM+AKL S NKP +
Sbjct: 243 ENETEVDDPDWDDIAMLIGSEIVRSVRAAVWDRLQYTCSAGVAKNKMMAKLGSSCNKPNK 302
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
QT V +V+ L K++ LGGKLG + G V DL+K S ++ + +T
Sbjct: 303 QTIVRNRAVQRFLGGYKFTKIRMLGGKLGDQVTAMFGTEQVSDLIKVSLEQFRAKLDDDT 362
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
TWL+ I RG EV +R KS S KSF ++ +V WL+ ++ RL
Sbjct: 363 ATWLYGIIRGEDKSEVNSRTQIKSMLSAKSFRP--SINSVDQADKWLSIFAADIFGRLVE 420
Query: 288 D-LEQNKRIAHTLTLH 302
D + ++KR T+ LH
Sbjct: 421 DGVLEHKRRPKTVALH 436
>gi|320034290|gb|EFW16235.1| sister chromatid cohesion protein [Coccidioides posadasii str.
Silveira]
Length = 665
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 162/351 (46%), Gaps = 37/351 (10%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHIL----------GLESKDG 100
R E+A IDEV++DL+ A L E P L E++ + S L G E +
Sbjct: 203 RIEKAGIDEVFIDLSALVWATLLERYP-MLQEMEVKRQMSERLPRPPTTALDWGKEDELV 261
Query: 101 NDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
+ + +E D D D ++ G IV +R+ + + +TCSAGIA NKM+AKL S
Sbjct: 262 DLDEGETEE----DDPDWDDMVMLVGADIVRSVRLMIRERLGYTCSAGIARNKMMAKLGS 317
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
NKP +QT V +++ L K++ LGGKLG + + V +LL+ ++ +
Sbjct: 318 ACNKPNKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFK 377
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCE 279
+TG WL+ + RG EV R KS S KSF PG + ++ + WL
Sbjct: 378 AKLDDDTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAA 434
Query: 280 ELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNL 338
E+ RL + + ++KR LT+H S + SR+ P+ G A +E F L
Sbjct: 435 EIYGRLVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFAL 486
Query: 339 FQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 389
+ L++ T H W L+++ S +SG S+ +F
Sbjct: 487 AKDLLKQV-------TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|389748620|gb|EIM89797.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 700
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 34/305 (11%)
Query: 29 KADLSSYRNAGSEVVSILAR---KGRCERASIDEVYLDLTDAAEAMLAE-------TPPE 78
K L YR +++++I +G E+ASIDE ++D + +L E PP+
Sbjct: 144 KVSLDHYRRESAKIITIFKEGLPEGEIEKASIDEAFIDFSRPVRKILLERYPHLATVPPD 203
Query: 79 SLDEVDEEAL---------KSHILGLESKDGNDSKATVKEWLCRCDADHRDK-------- 121
+ D +D KS+I+ + +++ E ++ DK
Sbjct: 204 APDGLDTVLPPPPPITWDSKSNIIPIYPSKSSETVVDAPETDREAESHKEDKDVEPAPTW 263
Query: 122 ---LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
L+ ++ ++R V ++ +T SAGIA NK LAKL + K Q+ + +++
Sbjct: 264 HDVALSIAAELMDKIRGDVREQLGYTTSAGIARNKFLAKLTASYRKYDSQSVLRNAAIPN 323
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L + +K++ LGGKLG +L +E V+TVGDLL S +++Q +G W++ I RGI
Sbjct: 324 YLQPMQFQKIRFLGGKLGKALADEYDVSTVGDLLTISLEEMQRKFG-EESIWVYEILRGI 382
Query: 239 SGEEVQARL-LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
EV+ + + KS + K+ PR + TVA HWL L EL+ RL ++
Sbjct: 383 DRSEVKEKPSMAKSMMASKNL--PRPITTVAEGPHWLRVLAAELALRLNEARMEHDVWPK 440
Query: 298 TLTLH 302
T+ +H
Sbjct: 441 TIVVH 445
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 136/299 (45%), Gaps = 35/299 (11%)
Query: 25 VARGKADLSSYRNAGSEVVS----ILARKG-RCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR +++ IL K R E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRQESRKILKCIKEILPDKDQRVEKASIDEVFMDLSAQVHTILLERYPEL 191
Query: 79 ----SLDEVDEEALKSHILGLE----------SKDGNDSKATVKEWLCRCDADHRDKLLA 124
D+ E K L+ +DG D D D D +
Sbjct: 192 RGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDR-----------DPDWDDVCMV 240
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
IV ++R + +TCS GIA NKML+KL SG KP QQT + +VK L +
Sbjct: 241 IASEIVRDVRKHIKDTLGYTCSGGIARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLSDMK 300
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG + G V DL++ D+L+ G +TGTW+ +I RG EV
Sbjct: 301 FTKIRMLGGKLGDEVVAMFGTDKVRDLVEQPLDQLKR-LGDDTGTWIHSIIRGEDNSEVN 359
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
R KS S KSF A+ + WL ++ R + + +NKR ++ LH
Sbjct: 360 PRTQIKSMLSAKSFRP--AIHSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 160/357 (44%), Gaps = 44/357 (12%)
Query: 3 VSSM-RGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI 45
+S M R +AK+ CP++ V V + K L YR +++++
Sbjct: 95 ISRMDRVKDAKKRCPELIAVHVATYKEGQKEPGYWDDVDSHTHKVSLDYYRRESMKIINM 154
Query: 46 LARK---GRCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHILG- 94
G E+ASIDE ++D T LAE P ++ + +D +
Sbjct: 155 FKENLPGGEIEKASIDEAFIDFTRPVREKILERYPYLAEVPHDAPNGIDSPLPPPPPISW 214
Query: 95 -----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETE----FTC 145
L ++S E L R + D + I EL Q+ KE +T
Sbjct: 215 NAIGFLVPVTPSESAGNEGEELLRGEDDDSTTWHDVALSIAAELMDQIRKEVHTKLGYTT 274
Query: 146 SAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 203
SAGI+ NK LAKL + KP Q + + +++ L LP +K++ LGGKLG +L E
Sbjct: 275 SAGISRNKFLAKLCASYKKPNSQVCSILRNTAIPNYLRPLPFQKIRFLGGKLGDALAKEY 334
Query: 204 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPR 262
V+TVGDLL S +++Q +G N+ W++ + RGI EV+ + + KS + K+ P P
Sbjct: 335 DVSTVGDLLTISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAMFKSMLASKNLPKP- 392
Query: 263 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 318
+ + HWL L EL+ RL E + + T+ LHA + + FP
Sbjct: 393 -ITNPSEGHHWLRVLAAELALRLKDSREASPNLWPKTIVLHARKGYETARSKQASFP 448
>gi|392865724|gb|EAS31537.2| sister chromatid cohesion protein [Coccidioides immitis RS]
Length = 665
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 157/346 (45%), Gaps = 27/346 (7%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPP-----ESLDEVDEEALKSHILGLESKDGNDSKA 105
R E+A IDEV++DL+ A L E P E E+ E + L+ ++
Sbjct: 203 RIEKAGIDEVFIDLSALVWATLLERYPMLQEMEVKREMSERLPRPPTTALDWGKEDELVD 262
Query: 106 TVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
+ D D D ++ G IV +R + + +TCSAGIA NKM+AKL S NKP
Sbjct: 263 LDEGETEEDDPDWDDVVMLVGADIVRSVRFMIRERLGYTCSAGIARNKMMAKLGSACNKP 322
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT V +++ L K++ LGGKLG + + V +LL+ ++ +
Sbjct: 323 NKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIASTFETEQVDELLRVPLEQFKAKLDD 382
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLCEELSER 284
+TG WL+ + RG EV R KS S KSF PG + ++ + WL E+ R
Sbjct: 383 DTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG---INSLEQAEKWLRIFAAEIYGR 439
Query: 285 LCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 343
L + + ++KR LT+H S + SR+ P+ G A +E F L + L
Sbjct: 440 LVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ------VPIPTGMAIDEEPLFALAKDLL 491
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFN 389
++ T H W L+++ S +SG S+ +F
Sbjct: 492 KQV-------TNEGHM--WPCMNLALTVSGFEDGVSGNQSLDSFFT 528
>gi|70998010|ref|XP_753737.1| sister chromatid cohesion protein (Eso1) [Aspergillus fumigatus
Af293]
gi|66851373|gb|EAL91699.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus Af293]
gi|159126527|gb|EDP51643.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus A1163]
Length = 672
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 142/317 (44%), Gaps = 46/317 (14%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESK-DGNDS-----KAT 106
E+ASIDEV++DL+ A+L + PE L +E + DG + T
Sbjct: 183 EKASIDEVFIDLSSLVYALLLQRYPE--------------LRIEPQGDGRSTPLPRPPTT 228
Query: 107 VKEWL---CRCDADHR----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 153
EW C D D D + G IV +R V + +TCS G+A NK
Sbjct: 229 ALEWNTEDCLIDLDENETEVDDPDWDDIAMLIGSEIVRSVRTAVWNKLSYTCSGGVARNK 288
Query: 154 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 213
M+AKL S NKP +QT V +++ L S K++ LGGKLG + G V DLL
Sbjct: 289 MMAKLGSACNKPNKQTIVRNRAIQNFLGSFKFTKIRMLGGKLGDQVATLFGTEQVSDLLL 348
Query: 214 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
++ + + T +WL+ I RG EV R KS S KSF ++ + + W
Sbjct: 349 VPLEQFRAKFDDATASWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP--SINSADQAEKW 406
Query: 274 LNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQ 332
L ++ RL D + +N+R T+ LH + S+ P+ G+A I
Sbjct: 407 LRIFAADIYGRLVEDGVLENRRRPKTIALHHR--------QGGQVRSRQLPIP-GSATID 457
Query: 333 ED-TFNLFQAGLREFLG 348
E F L + LR+ +G
Sbjct: 458 EGLLFELGRTLLRQVIG 474
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 20/237 (8%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LL I E+R VL + +F CSAGIA NKMLAKLAS +NKP +QTTV + L+
Sbjct: 460 LLWFAAQITLEIRNAVLNQLDFHCSAGIAENKMLAKLASSLNKPNKQTTVTSTGAIALMR 519
Query: 182 SLPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
SLP++K++ LGGKLG + LG + G++ F +L G +TG +++ RG
Sbjct: 520 SLPLRKIRGLGGKLGREVCKRLGDIELAGEVWSFPLSRLVSLLGSDTGPFVYAAVRGRDS 579
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V R KS + KSF ++T S+ WL L EL R+ +D KR+ TL
Sbjct: 580 SAVVPRSTTKSMLAAKSFSP--VVETYQSLLDWLRVLASELVLRMRAD----KRVPRTLK 633
Query: 301 LHASAFKSSDSDSRK-------KFPSKSCPL---RYGTAKIQEDTFNLFQAGLREFL 347
+ F + + R + S+SCPL R+ + + L + RE L
Sbjct: 634 VQ---FHRASPNGRANSHAWWLEGKSRSCPLPHDRFNAELLASTAYGLLPSDAREIL 687
>gi|403415591|emb|CCM02291.1| predicted protein [Fibroporia radiculosa]
Length = 1222
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 188/441 (42%), Gaps = 80/441 (18%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 50
EA+ CP++ +V V + K L YR +++++ G
Sbjct: 673 EARRKCPELTVVHVATFKEGEKEPGYWKNPDTLTHKVSLDYYRRESMKIITMFQEGLPTG 732
Query: 51 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVD------------------- 84
E+ASIDE ++D T LAE PP++ + +D
Sbjct: 733 EIEKASIDEAFIDFTRPVREEILRRYPYLAEVPPDAPNGIDSPVPSPPPIIWSGLGTVVF 792
Query: 85 ---------EEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 135
++A++S S+ ++S VKE C D L+ ++ +R
Sbjct: 793 ADHEPQEIRDDAIRSQ-RSARSRTHDESSEGVKE--CDSSTTWHDVALSIAAELMGRIRR 849
Query: 136 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 195
+ ++ +T SAG+A NK LAKL + KP Q+ + +++ L + +K++ LGGKL
Sbjct: 850 DIHEKLGYTTSAGLARNKFLAKLTASYKKPNSQSILRNAAIPNYLRPIAFQKIRFLGGKL 909
Query: 196 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGS 254
G ++ E +TVGDLL + +++Q G N+ W++ I RGI EV+ + + KS +
Sbjct: 910 GKAIAEEFDASTVGDLLLINLEEMQRKLGENS-IWVYEILRGIDRSEVKEKSFVNKSMMA 968
Query: 255 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 313
K+ P P +T HW+ L EL+ RL +Q + TL LH +
Sbjct: 969 SKNLPQPVTNETQG--YHWIRVLAAELALRLTEARDQTPALWPKTLVLHVRQGYDTARSK 1026
Query: 314 RKKFPSKSCPLRYGTAKIQEDTFNLFQAG---LREFLGSFGVKTQGSHYSGWRITALSVS 370
+ FP D + AG RE +G T S + +IT +++
Sbjct: 1027 QAPFPFSR----------HVDIDIVASAGDKLWRELVG-----TDTSRAAPVKITHIALG 1071
Query: 371 ASKIVPVLSGTCSIMKYFNGP 391
+ + + +G SI +F+ P
Sbjct: 1072 FTGVESMEAGQQSIEGFFHTP 1092
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 183/419 (43%), Gaps = 54/419 (12%)
Query: 9 DEAKEVCPQIELVQVPV-ARG-----------------KADLSSYRNAGSEVVSILARK- 49
D+A+++CP++ V V A G K L YR +++ I +
Sbjct: 73 DQARKLCPELICVHVATYAHGDSETEAKYHENPRAETHKVSLDPYRRESVKILKIFSESC 132
Query: 50 GRCERASIDEVYLDLTDAAEAMLA--------ETPPESLDEVDEEALKSHILGLESKDGN 101
E+ASIDE +LD + +L E +S E+ + + L+ +D
Sbjct: 133 PTIEKASIDEAFLDFSIPVREILCTRYAFPSLEALQDSSSEISLDDPLPNPPPLDLEDLL 192
Query: 102 DSKATVKEWLCRCDADH-----RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLA 156
S + L D+DH D L G ++ R QV +TCSAGIA NKMLA
Sbjct: 193 RSSQSNLVPL-DVDSDHPTNTWTDIALLIGAELMARCRQQVFDRLGYTCSAGIATNKMLA 251
Query: 157 KLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT------VGD 210
KL S KP QT + +V+ L + K++ LGGKLG S+ +EL +T + +
Sbjct: 252 KLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKLGQSV-SELVASTCDKSCQLSE 310
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+ K +LQ S G TG W+W RG+ EV+ + L KS S K+F ++ T +
Sbjct: 311 VWKIPLSQLQASLGEQTGMWVWETVRGVDRSEVETKTLVKSMMSSKNFRP--SITTWSQA 368
Query: 271 QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA 329
HWL L +L RL E I + +H + + FP TA
Sbjct: 369 LHWLRILARDLCARLNEAREATPGIWPKLIVMHKRDGLQNSLTKQIAFPF--------TA 420
Query: 330 KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 388
++ +D +F G ++ L F V Y +T+L+++ + + +G +I +F
Sbjct: 421 QLTDD--YIFSLG-KKLLQEFAVIQTDQTYRLDTVTSLALAFHNLERIEAGQRAIQGFF 476
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 171/398 (42%), Gaps = 54/398 (13%)
Query: 52 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN--DSKATVKE 109
E+ASIDEV++DL+ L + PE L+ I E++D T +
Sbjct: 171 VEKASIDEVFIDLSPLIYRALLQRYPE---------LRMGIPN-ENRDAELPVPPTTALQ 220
Query: 110 WLCRC------------DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
W C D D D ++ G IV +R V ++ +TCSAG+ NKM+AK
Sbjct: 221 WNTDCLVDLDKHETEEDDPDWDDVVMLIGSEIVRSVRSAVWEKLSYTCSAGLGRNKMIAK 280
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L S NKP QT V +V+ L +++ LGGKLG + G V +LL +
Sbjct: 281 LGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLGDQITAAFGTEKVSELLNAPLE 340
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
+L+ T TWL+ I RG EV R KS S KSF ++ ++ + WL
Sbjct: 341 QLRTKLADQTATWLYGIIRGEDRSEVNPRTQIKSMLSAKSFRP--SINSLDQAEKWLRIF 398
Query: 278 CEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTF 336
++ RL D + +N+R +T+H +S S+ P+ +A + +
Sbjct: 399 AADIYGRLVEDGVLENRRRPKVITMHHRTAQSR---------SRQIPIASSSAIDENLLY 449
Query: 337 NLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGS 396
+L + LR+ + + W + LS+S S +S +I + D+ +
Sbjct: 450 DLANSLLRQVV---------ADGQAWPCSNLSLSVSSFEDGVSNNKAIEGFLIRGDQAKA 500
Query: 397 TSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 434
S ID +P S L STE + +L G+
Sbjct: 501 LSHSSRPRDIDNSP---------SELPSTEKRRKLDGD 529
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 122/272 (44%), Gaps = 38/272 (13%)
Query: 52 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA------ 105
E+AS+DEV++DL+ +L PE + DG+D A
Sbjct: 183 VEKASVDEVFIDLSPLVYGVLLRRYPELRN---------------GPDGDDRVASLPRPP 227
Query: 106 -TVKEWL---CRCDADHR----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
T EW C D D D + G IV +R V +TCSAGIA
Sbjct: 228 TTALEWNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAK 287
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
NKM+AKL S NKP +QT V +++ L K++ LGGKLG + G V DL
Sbjct: 288 NKMMAKLGSSSNKPNKQTIVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTALFGTEQVSDL 347
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
L+ + ++ + +T WL+ I RG EV R KS S KSF ++ +V +
Sbjct: 348 LQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP--SINSVEQAE 405
Query: 272 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
WL ++ RL D + +++R TL LH
Sbjct: 406 RWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|67537016|ref|XP_662282.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|40741530|gb|EAA60720.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|259482486|tpe|CBF77016.1| TPA: DNA polymerase eta (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 674
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 141/317 (44%), Gaps = 48/317 (15%)
Query: 52 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA------ 105
E+AS+DEV++DL+ +L + PE + K H G+D A
Sbjct: 184 VEKASVDEVFIDLSPLVFGVLLQRYPEMRE-------KPH--------GDDRVALLPCPP 228
Query: 106 -TVKEWL---CRCDADHR----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
T EW C D D D + G IV +R V +TCSAGIA
Sbjct: 229 TTALEWDTEDCLVDLDENETEVDDPDWDDVAMLIGAEIVRSVRTAVWNSLSYTCSAGIAK 288
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
NKM+AKL S NKP +QT V +++ L K++ LGGKLG + G + +L
Sbjct: 289 NKMMAKLGSATNKPNKQTVVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTAMFGTEQISEL 348
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
LK S ++ + +T WL+ I RG EV R KS S KSF ++ T+
Sbjct: 349 LKVSLEQFRAKLNDDTAVWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP--SINTLDQAD 406
Query: 272 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAK 330
WL+ ++ RL + + ++KR T+ LH + S+ P+ G+A
Sbjct: 407 KWLHIFAADIYGRLVEEGVLEHKRRPKTIALHHR--------QGAQVKSRQLPIP-GSAT 457
Query: 331 IQED-TFNLFQAGLREF 346
I ED F L + LR+
Sbjct: 458 IDEDLLFELGKTLLRQI 474
>gi|302668344|ref|XP_003025744.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
gi|291189871|gb|EFE45133.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
Length = 645
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 127/270 (47%), Gaps = 28/270 (10%)
Query: 51 RCERASIDEVYLDLTDAAEAML---------AETPPESLDE----VDEEALKSHILG--- 94
R E+A IDEV++DL+ L A TP S D + + I G
Sbjct: 174 RLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATPDGSKDGPNTFLPRPETTALIWGEDD 233
Query: 95 -LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNK 153
L D +S+ EW D ++ G IV +R V + ++TCS GIA NK
Sbjct: 234 ELIDLDTGESEEDDPEW--------DDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARNK 285
Query: 154 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 213
M+AKL S NKP +QT V +++ L K++ LGGKLG + +E + DLL
Sbjct: 286 MMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLLT 345
Query: 214 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 273
D+L+ +TG WL+ I RG EV R KS S KSF P+ L ++ + W
Sbjct: 346 IPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEKW 403
Query: 274 LNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ EL RL + + +NKR +T+H
Sbjct: 404 MRIFVAELYGRLVDEGVLENKRRPKMITVH 433
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 151/360 (41%), Gaps = 70/360 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV 43
V + +EAK++CPQ+ V V + K L YR +++
Sbjct: 84 VSRMITAEEAKKLCPQLLTPHVATFREGEGENWAYREGGYSVQKDKVSLDPYRAESRKIL 143
Query: 44 SILAR-------------KG---------RCERASIDEVYLDLTDAAEAMLAETPPESLD 81
+++ +G R ERA IDEV++DL+ L + E L
Sbjct: 144 AVMKATLLSCAEGIYEGCRGQFSEPSDMVRLERAGIDEVFVDLSALVFGTLLQRY-EVLR 202
Query: 82 EVDEEALKSHILG------------------LESKDGNDSKATVKEWLCRCDADHRDKLL 123
+ + LG L D S+ EW D ++
Sbjct: 203 SAEAVECSTDSLGGFLPRPEATALVWGEDDELIDLDTGKSEEEDPEW--------DDIVM 254
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
G IV +R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L
Sbjct: 255 LVGSEIVKSIRAAVWDQLKYTCSGGIARNKMIAKLGSACNKPNRQTIVRNRAIQQFLSGY 314
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
K++ LGGKLG + +E + DLL D+L+ +TGTWL+ I RG EV
Sbjct: 315 KFTKIRSLGGKLGKRVASEFETEKIRDLLNIPLDRLKNKLDDDTGTWLYQIIRGEDDSEV 374
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
R KS S KSF P+ L + + W+ E+ RL + + +NKR +T+H
Sbjct: 375 TPRTEIKSMISAKSF-NPK-LNALDQAERWMRIFVTEIYGRLIDEGVLENKRRPKMITVH 432
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 122/272 (44%), Gaps = 38/272 (13%)
Query: 52 CERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKA------ 105
E+AS+DEV++DL+ +L PE + DG+D A
Sbjct: 183 VEKASVDEVFIDLSPLVYGVLLRRYPELRN---------------GPDGDDRVASLPRPP 227
Query: 106 -TVKEWL---CRCDADHR----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
T EW C D D D + G IV +R V +TCSAGIA
Sbjct: 228 TTALEWNQGDCLVDLDENETEVDDPDWDDVAMLIGSDIVRAVRTVVWDNLSYTCSAGIAK 287
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
NKM+AKL S NKP +QT V +++ L K++ LGGKLG + G V DL
Sbjct: 288 NKMMAKLGSSSNKPNKQTIVRNRAIQTFLGGFKFTKIRMLGGKLGDQVTALFGTEQVSDL 347
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
L+ + ++ + +T WL+ I RG EV R KS S KSF ++ +V +
Sbjct: 348 LQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP--SINSVEQAE 405
Query: 272 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
WL ++ RL D + +++R TL LH
Sbjct: 406 RWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 137/298 (45%), Gaps = 44/298 (14%)
Query: 37 NAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLE 96
N+ E+ ++L E+ASIDEV++DL+ L + PE L +
Sbjct: 162 NSKQELSAVL------EKASIDEVFIDLSPLIYRALLQRYPE--------------LRMG 201
Query: 97 SKDGNDSK------ATVKEWLCRC------------DADHRDKLLACGVLIVTELRMQVL 138
++D N T +W C D D D ++ G IV +R V
Sbjct: 202 TQDENRDAELPTPPTTALQWDTDCLVDLDKHETEEDDPDWDDIVMLIGSEIVRSVRNTVW 261
Query: 139 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 198
++ +TCSAG+ NKM+AKL S NKP QT V +V+ L +++ LGGKLG
Sbjct: 262 EKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLGEQ 321
Query: 199 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
+ G V DLL ++L+ +T +WL+ I RG EV R KS S KSF
Sbjct: 322 ITAAFGTEKVSDLLNVPLEQLRSKLADHTASWLYGIIRGDDRSEVNPRTQIKSMLSAKSF 381
Query: 259 PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 315
++ ++ + WL ++ RL D + +N+R +T+H +++ S SR+
Sbjct: 382 RP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMH---HRTAQSRSRQ 434
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 142/316 (44%), Gaps = 44/316 (13%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSK-----ATV 107
E+ASIDEV++DL+ A+L + PE L++ G DG + T
Sbjct: 184 EKASIDEVFIDLSPLVYALLLQRYPE---------LRNGPQG----DGRSTPLPRPPTTA 230
Query: 108 KEWL---CRCDADHR----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKM 154
EW C D D D + G IV +R V + +TCS G+A NKM
Sbjct: 231 LEWSTEDCLIDLDENETEVDDPDWDDIAMLIGSEIVRSVRTAVWNKLSYTCSGGVARNKM 290
Query: 155 LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
++KL S NKP +QT V +++ L S K++ LGGKLG + G V DLL
Sbjct: 291 MSKLGSACNKPNKQTIVRNRAIQNFLGSYKFTKIRMLGGKLGDQVATLFGTEQVSDLLPV 350
Query: 215 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWL 274
++ + +T +WL+ I RG EV R KS S KSF ++ + + WL
Sbjct: 351 PLEQFRAKLDDDTASWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP--SINSADQAEKWL 408
Query: 275 NQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE 333
++ RL D + +N+R T+ LH + S+ P+ G+A I E
Sbjct: 409 RIFAADIYGRLVEDGVLENRRRPKTVALHHR--------QGGQVRSRQLPIP-GSATIDE 459
Query: 334 D-TFNLFQAGLREFLG 348
F L + LR+ +G
Sbjct: 460 SLLFELGRTLLRQVIG 475
>gi|302767294|ref|XP_002967067.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
gi|300165058|gb|EFJ31666.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
Length = 332
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 139/306 (45%), Gaps = 43/306 (14%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 68
DEAK C + L+ DL+ YR A ++ ++ R G E+ +DE +D+T+
Sbjct: 49 DEAKRCCSDLVLIN------GEDLTPYRYASKLIMEVIKRFGTVEKRGLDECAVDVTEEV 102
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
+A P S H+LG G+ + A D LL G
Sbjct: 103 LKRVASANPTSF--------VGHVLG-----GDLTT----------QATQGDLLLMVGTQ 139
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP++K+
Sbjct: 140 LAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPDKQTCITQSAVNDFIVPLPVRKI 199
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + +L+ E+GV T+GD+ + +L +G G L++ RG VQ +
Sbjct: 200 PGVGRQTEATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGF 258
Query: 249 PKSHGSGKSFPGPRALK-------------TVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS SF +L T +Q L+ L +L RL D + +R
Sbjct: 259 SKSLSVEDSFKPCSSLDQAKVRLNSSCIRVTSVCLQEILSCLAPDLIARLDEDKAETERT 318
Query: 296 AHTLTL 301
T T+
Sbjct: 319 PKTFTV 324
>gi|258570849|ref|XP_002544228.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904498|gb|EEP78899.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 588
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 178/433 (41%), Gaps = 74/433 (17%)
Query: 10 EAKEVCPQIELVQVP-------------------VARGKADLSSYRNAGSEVVSILARKG 50
EA+ CPQ+ +V V VA K L YR E++ + R G
Sbjct: 40 EARARCPQLMMVHVATFREGEGGKWAYRPEGDHDVATDKVSLDPYRAESREILRTM-RDG 98
Query: 51 ----------------------------RCERASIDEVYLDLTDAAEAMLAETPP----- 77
+ E+A IDEV++DL+ A L E P
Sbjct: 99 LMAWAERVEPCGFGEGGGGRERDRSLMFKLEKAGIDEVFVDLSALVWATLLERYPMLREM 158
Query: 78 ESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQV 137
E E+ E + L+ + ++ + D D D ++ G I+ +R+ V
Sbjct: 159 EVKKEMGERLPRPPTTALQWEKEDELVDLDEGETEEDDPDWDDVVMLIGAEIIRSVRLLV 218
Query: 138 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 197
+ ++TCS GIA NKM+AKL S NKP +QT V +V+ L K++ LGGKLG
Sbjct: 219 WERLKYTCSGGIARNKMMAKLGSACNKPNKQTIVRHRAVQQFLGDFKFTKIRNLGGKLGK 278
Query: 198 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 257
+ + VG+L + ++L+ +TG WL + RG EV R KS S K+
Sbjct: 279 HISSTFETEQVGELQQVPLEQLKAKLDDDTGMWLHELIRGNDYSEVTPRTQIKSMSSTKA 338
Query: 258 FPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKK 316
F ++ + + WL E+ RL + + ++KR LT+H ++
Sbjct: 339 FRP--SITSSEQAEKWLRIFVAEIYGRLVEEGVLEHKRRPKVLTIHRYTGQTK------- 389
Query: 317 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 376
S+ P+ G A +E F L + L++ + + W LS++ S
Sbjct: 390 --SRQIPIPSGMALGEEPLFALAKQLLKQIVNDGQM---------WPCINLSLTVSGFED 438
Query: 377 VLSGTCSIMKYFN 389
++G S+ +F
Sbjct: 439 GVAGNQSLDGFFT 451
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 155/348 (44%), Gaps = 46/348 (13%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILAR---KG 50
+AK+ CP + V V + K L YR ++++++ G
Sbjct: 102 DAKKKCPDLVSVHVATYKEGEKEPGYWDDIDTRTHKVSLDLYRRESAKIMNVFKEMLPNG 161
Query: 51 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVD----------EEALKSHIL 93
E+ASIDE ++DLT LA PP + D + A K H++
Sbjct: 162 EIEKASIDEAFIDLTQPVRDTILERYPYLANIPPNAPQGADTPLPSPPLELDWADKVHLI 221
Query: 94 G-LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 152
L S DG+DS E+ D L +T++R QVL ++ SAG+A N
Sbjct: 222 PILPSDDGDDSPKDESEF----PPTWHDVALCIAAEFMTKMRKQVLDTLGYSTSAGLARN 277
Query: 153 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 212
K LAKL++ + KP Q+ + ++ L + +K++ LGGKLG + +E V++VGD+L
Sbjct: 278 KALAKLSASVRKPNGQSILRNDAIPNYLRPMAFQKIRFLGGKLGKAFADEYDVSSVGDIL 337
Query: 213 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL-LPKSHGSGKSFPGPRALKTVASVQ 271
S D++Q +G W++ + RGI EV+ + KS + K+ P P + +
Sbjct: 338 TVSLDEMQSKFG-EESLWVYELVRGIDRSEVKEKTAYFKSMLASKNLPKP--ITKSSEGP 394
Query: 272 HWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 318
W+ L EL+ RL E + T+ LH + + FP
Sbjct: 395 QWIRVLAAELTLRLNEARETMPSLWPKTIALHLRKGYEASRSKQAPFP 442
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 129/271 (47%), Gaps = 30/271 (11%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS-----KA 105
R E+A IDEV++DL+ L E+ ++A + SKDG+ + +
Sbjct: 173 RLEKAGIDEVFVDLSALVFGTLLHRY-----EILQQAATLEV----SKDGHSAFLPRPET 223
Query: 106 TVKEW-----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 152
T W L D + D ++ G IV +R V + ++TCS GIA N
Sbjct: 224 TALIWGEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARN 283
Query: 153 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 212
KM+AKL S NKP +QT V +++ L K++ LGGKLG + +E + DLL
Sbjct: 284 KMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLL 343
Query: 213 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 272
D+L+ +TG WL+ I RG EV R KS S KSF P+ L ++ +
Sbjct: 344 TIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEK 401
Query: 273 WLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
W+ E+ RL + + +NKR +T+H
Sbjct: 402 WMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 129/271 (47%), Gaps = 30/271 (11%)
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDS-----KA 105
R E+A IDEV++DL+ L E+ ++A + SKDG+ + +
Sbjct: 173 RLEKAGIDEVFVDLSALVFGTLLHRY-----EILQQAATLEV----SKDGHSAFLPRPET 223
Query: 106 TVKEW-----LCRCDA--------DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 152
T W L D + D ++ G IV +R V + ++TCS GIA N
Sbjct: 224 TALIWGEDDELIDLDTGESEEDDPEWDDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIARN 283
Query: 153 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 212
KM+AKL S NKP +QT V +++ L K++ LGGKLG + +E + DLL
Sbjct: 284 KMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGKKISSEFETDKISDLL 343
Query: 213 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 272
D+L+ +TG WL+ I RG EV R KS S KSF P+ L ++ +
Sbjct: 344 TIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQAEK 401
Query: 273 WLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
W+ E+ RL + + +NKR +T+H
Sbjct: 402 WMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|302501757|ref|XP_003012870.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
gi|291176431|gb|EFE32230.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
Length = 644
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 126/273 (46%), Gaps = 34/273 (12%)
Query: 51 RCERASIDEVYLDLTDAAEAML----------------AETPPESLDEVDEEALKSHILG 94
R E+A IDEV++DL+ L + P L + AL + G
Sbjct: 173 RLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGSKDDPNTFLPRPETTAL---VWG 229
Query: 95 ----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
L D +S+ EW D ++ G IV +R V + ++TCS GIA
Sbjct: 230 EDDELIDLDTGESEEDDPEW--------DDIVIQVGAEIVKFVRTAVWDQLKYTCSGGIA 281
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
NKM+AKL S NKP +QT V +++ L K++ LGGKLG + +E + D
Sbjct: 282 RNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGKRISSEFETDKISD 341
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
LL D+L+ +TG WL+ I RG EV R KS S KSF P+ L ++
Sbjct: 342 LLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAKSF-NPK-LASLDQA 399
Query: 271 QHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ W+ E+ RL + + +NKR +T+H
Sbjct: 400 EKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|327301129|ref|XP_003235257.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
gi|326462609|gb|EGD88062.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
Length = 645
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 149/354 (42%), Gaps = 74/354 (20%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILAR--- 48
EA+++CPQ+ V V + K L YR +++++L
Sbjct: 92 EARKLCPQLLTPHVATFREGEGEHWAYREGDYSVQKDKVSLDPYRAESRKILAVLKTTLL 151
Query: 49 ----------KG---------RCERASIDEVYLDLTDAAEAML----------------A 73
+G R E+A IDEV++DL+ L
Sbjct: 152 TWAEGVYDGCRGQFSEPSDMVRLEKAGIDEVFVDLSALVFGTLLHRYEILRRAATLDGSK 211
Query: 74 ETPPESLDEVDEEALKSHILG----LESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
+ P L + AL I G L D +S+ EW D + G I
Sbjct: 212 DGPNTFLPRPETTAL---IWGEDDELIDLDTGESEEDDPEW--------DDIAIQVGAEI 260
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
V +R V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++
Sbjct: 261 VKFVRTAVWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIR 320
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LGGKLG + +E + DLL D+L+ +TG WL+ I RG EV R
Sbjct: 321 SLGGKLGKKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEI 380
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
KS S KSF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 381 KSMISAKSF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 168/434 (38%), Gaps = 79/434 (18%)
Query: 9 DEAKEVCPQIELVQVPV-ARG-----------------KADLSSYRNAGSEVVSILARK- 49
DEA + CP + V V A+G K L YR +++ I +
Sbjct: 78 DEALKKCPNLICVHVATYAQGDSETEAKYHENPKPETHKVSLDPYRRESVKILKIFSESC 137
Query: 50 GRCERASIDEVYLDLTDAAEAMLAET------------------PPESLDEVDEEALKSH 91
E+ASIDE +LD + +L PP LD E H
Sbjct: 138 DLIEKASIDEAFLDFSIPVRDILINRYSDLLSTSKTNNLDDFLPPPPQLDWKSTE----H 193
Query: 92 ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
L L + D + W D L G ++ + R V + +TCSAG+
Sbjct: 194 NLILNTSDSEVDEMMTTTWT--------DVALMIGAELMAQCRKAVFDQLGYTCSAGVTS 245
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG------- 204
NKMLAKL S KP QT + S +K L L + K++ LGGKLG SL +
Sbjct: 246 NKMLAKLCSSYKKPNAQTVLRPSCIKSFLRDLEVSKIRFLGGKLGKSLIELIHHPSQATA 305
Query: 205 ---------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 255
TTVG++ LQ G TG W+W I RGI EV+ + KS S
Sbjct: 306 AEEEAEESIRTTVGEVWNLDLSLLQNKLGDETGMWVWEIVRGIDKTEVEPKTQVKSMMSS 365
Query: 256 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSR 314
K+F ++ + HWL L +L RL I T+ +H + + +
Sbjct: 366 KNFRP--SISSWEEGIHWLRILSTDLLARLNEARTLTPGIWPKTIVMHKRDGNYNSTAKQ 423
Query: 315 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 374
FP T K+ D +F G R L F +K +IT+L ++ +
Sbjct: 424 IGFPF--------TQKL--DRLYIFNLGQR-LLQEFVIKENSKKKELGKITSLCLAFQTL 472
Query: 375 VPVLSGTCSIMKYF 388
+ SG I +F
Sbjct: 473 ERLESGQQGIEGFF 486
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 139/329 (42%), Gaps = 83/329 (25%)
Query: 9 DEAKEVCPQIELVQVPV-------------ARGKADLSSYRNAGSEVVSILARKGRC-ER 54
D+AK+ CPQI L V KA L YR A E+ +IL E+
Sbjct: 64 DDAKKKCPQIHLPHVDTLGENRKPGQLFDRTHQKAILRRYRVASREIFAILGSMAPIIEK 123
Query: 55 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 114
ASIDE ++D+T+ A LA+T C+
Sbjct: 124 ASIDEAFMDVTEMATQRLAQTVN---------------------------------FCQD 150
Query: 115 DADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
A+H K L C G +I E+R + + +TCS G+A NK+LAKLAS +NKP Q V
Sbjct: 151 PANHDTKRLLCIGAVISREIRQAIYSKLGYTCSTGVAGNKLLAKLASPLNKPNGQVVVAP 210
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQN------ELGVTTVGDLLKFSEDKLQESYGFNT 227
V L+ SLP++K++ LGGKLG L+ +L T +E L + G T
Sbjct: 211 RFVADLMKSLPMRKVRGLGGKLGKQLETAKDAFKKLSAHTFLQRCGLAE--LTKHVGQET 268
Query: 228 GTWLWNIARGISGEE------VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
++ I +G G E VQ ++L G +W+ LCEE+
Sbjct: 269 AAYVHQICQGDDGNEPVEEKKVQVKML----GC-----------------YWVRLLCEEM 307
Query: 282 SERLCSDLEQNKRIAHTLTLHASAFKSSD 310
R + +NKR LT+ + K D
Sbjct: 308 VMRCEDERVENKRFPSQLTIQFTRAKPGD 336
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 34/273 (12%)
Query: 51 RCERASIDEVYLDLTDAAEAML----------------AETPPESLDEVDEEAL----KS 90
R E+A IDEV++DL+ L ++P L + AL
Sbjct: 175 RLEKAGIDEVFVDLSALVFGTLLQRYEVLRLAGTFEGSKDSPNRLLPRPETTALLWGEDD 234
Query: 91 HILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
++ L D +S+ EW D ++ G IV +R V + ++TCS GIA
Sbjct: 235 ELIDL---DTGESEEDDPEW--------DDVVIQVGAEIVKFVRTAVWDQLKYTCSGGIA 283
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
NKM+AKL S NKP +QT V +++ L K++ LGGKLG + +E + D
Sbjct: 284 RNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLGKKIASEFETDKISD 343
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
LL D+L+ +TG WL+ I RG EV R KS S KSF P+ L ++
Sbjct: 344 LLNIPLDRLKNKLDDDTGVWLYQIIRGEDDCEVTPRTEIKSMISAKSF-NPK-LVSLDQG 401
Query: 271 QHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
+ W+ E+ RL + + +NKR +T+H
Sbjct: 402 EKWMRIFVAEIYGRLIDEGVLENKRRPKMITVH 434
>gi|325190748|emb|CCA25240.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 619
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 163/363 (44%), Gaps = 66/363 (18%)
Query: 9 DEAKEVCPQIELVQVPV--------------ARGKADLSSYRNAGSEVVSILARKGR-CE 53
DEA + CP+I + V V A KA L YR+A + + +L R CE
Sbjct: 65 DEALKKCPKIHIPHVEVLGENRLRNGEPYDRAHQKATLRRYRDASNAIFKVLRRHAVICE 124
Query: 54 RASIDEVYLDLTDAAEAMLAETPPE----SLDEVDEEAL--------KSHILGLESK-DG 100
RA IDE YLD+T+ A +LA + ++ ++ + L +S I+ + K D
Sbjct: 125 RAGIDEAYLDVTERATELLANMEVQMHDFCMNALNRDTLVYGVCERKRSGIIERKCKTDT 184
Query: 101 NDSKATVKEWLCRCDA---DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
++ + E + ++ ++LL G LI E+R V E + CS GI+ NK++AK
Sbjct: 185 SEDECDENETIVTSESFPLTEEEQLLCVGALISREIREAVYTELGYRCSTGISTNKLIAK 244
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL------------------ 199
LAS +NKP QT V V L+ PI+K++ LGGKLG +
Sbjct: 245 LASPLNKPNGQTIVSPRFVPLLMRHHPIQKVRGLGGKLGHRMMEYYDQFVCSKEKQENKE 304
Query: 200 ----QNEL----------GVTTVGDLLK-FSEDKLQESYGFNTGTWLWNIARGISGEE-V 243
QN + T GD ++ S L +G T +++ + G G E V
Sbjct: 305 PQKYQNTMESGGKRDEIKSKITAGDFIQACSLSSLSAYFGNETAAFVYRLCLGDDGNEPV 364
Query: 244 QA-RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
++ K S K F ++ +++WL + EE+ +R+ + ++R +TLH
Sbjct: 365 DGDKVDLKGFSSTKQFTPNSHIQNEPQLRYWLRIISEEMMDRINEEKHDHRRFPVHVTLH 424
Query: 303 ASA 305
++
Sbjct: 425 ITS 427
>gi|392564568|gb|EIW57746.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 699
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 153/371 (41%), Gaps = 65/371 (17%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARK---G 50
+A++ CP + +V V R K L YR +++ + G
Sbjct: 109 DARKRCPDLVVVHVATYREGEAEPGYWENPDTRTHKVSLDHYRRESMKIIQLFKEGLPGG 168
Query: 51 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEALKSHIL---GLES--- 97
E+ASIDE ++D T LA PP++ + VD + GL +
Sbjct: 169 EVEKASIDEAFIDFTRPVREELLKRYPYLAVVPPDAPNGVDSPLPPPPPISWDGLATIVP 228
Query: 98 --------------------KDGNDSKATVKEWLCRCDADH--------RDKLLACGVLI 129
D K+ + E + D L+ +
Sbjct: 229 VNPPKEPPKEQDLPAGESVESTAEDQKSNISEPTDDDEVVEEDDSLTTWHDVALSIAAEL 288
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
+ +R + + +T SAGIA NK LAKL + KP QT + +++ L + +K++
Sbjct: 289 MLRIREDIRTKLGYTTSAGIARNKFLAKLTASYKKPMNQTVLRNAAIPNYLKPMAFQKIR 348
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LL 248
LGGKLG +L E V+TVGDLL S +++Q +G ++ W++ I RGI EV+ + +
Sbjct: 349 FLGGKLGKALAEEYDVSTVGDLLTISLEEMQRKFGEDS-IWVYEILRGIDRSEVKEKSAV 407
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFK 307
KS + K+ P P + HW+ L EL+ RL E N + T+ LH
Sbjct: 408 NKSMLASKNLPQP--ITKATQGYHWIRVLAAELALRLNEAREANTALWPKTIVLHIRQGY 465
Query: 308 SSDSDSRKKFP 318
+ + FP
Sbjct: 466 ETSKSKQTPFP 476
>gi|134112233|ref|XP_775092.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257744|gb|EAL20445.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 708
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 144/328 (43%), Gaps = 57/328 (17%)
Query: 9 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK--- 49
++AK++CP + + V R K L YR ++++I K
Sbjct: 85 EDAKKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKIPR 144
Query: 50 GRCERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH----------- 91
G E+ASIDE +LDLT AA L++ P ++ + +D
Sbjct: 145 GEIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVF 204
Query: 92 -ILGLESKDGNDSKATVKE---------WLCRCDADHRDKL----LACGVLIVTELRMQV 137
I G E G D + +E + R +RD L G +++ +R +V
Sbjct: 205 PIDGKEDGSGTDHQEDKEEDERSEDGDEFDGRTSGSNRDSWEDWALCMGGELMSNVREEV 264
Query: 138 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 197
+TC+AGIAHNK +AKL S KP QT + ++V L+ ++ LGGKLG
Sbjct: 265 YLRLHYTCTAGIAHNKAMAKLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGA 324
Query: 198 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 257
++ + G T + S D++Q +G W++NI RGI EV R+ KS + KS
Sbjct: 325 AIAQQFGAKTRRTV---SLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKS 380
Query: 258 FPGPRALKTVASVQHWLNQLCEELSERL 285
A+ + WL+ L EL+ RL
Sbjct: 381 IRP--AVTSPQQGHQWLSILAGELNVRL 406
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 29/309 (9%)
Query: 10 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-RC 52
EAK+ CP++ V + K L YR+ ++++I+ +
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVV 141
Query: 53 ERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL--KSHILGLESKDGNDSKATVKE 109
++ASIDE +++LT D +L E P + D ++ +L ++ G +E
Sbjct: 142 KKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFG---MVIEEE 198
Query: 110 WLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
+ R D+ D L IV E+R + + ++TCSAG++ N ML+KL S NKP
Sbjct: 199 VVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKP 258
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L + G
Sbjct: 259 NKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQ 318
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
G +WN+ GI E+ ++ KS S K+F + +K+ +W +L R
Sbjct: 319 TNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDLRSRF 377
Query: 286 CSDLEQNKR 294
+LE +R
Sbjct: 378 L-ELEGMRR 385
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 119/254 (46%), Gaps = 32/254 (12%)
Query: 25 VARGKADLSSYRNAGSEVV-----SILARKGRCERASIDEVYLDLTDAAEAMLAETPPE- 78
+A K L YR ++ S+ ++ R E+ASIDEV++DL+ +L E PE
Sbjct: 132 MATHKVSLDPYRLECRRILKCIKESLPDKEQRVEKASIDEVFMDLSGQIHTILLERYPEL 191
Query: 79 ----SLDEVDEEALKSHILGLE----------SKDGNDSKATVKEWLCRCDADHRDKLLA 124
D+ E K L+ +DG D D D D
Sbjct: 192 RGPAPYDDPTERLPKVPTTVLDWAADALVETGEEDGEDQ-----------DPDWDDVCTV 240
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
IV ++R + ++ +TCS G+A NKMLAKL SG KP QQT + ++K L +
Sbjct: 241 IASEIVRDVRKNIKEKLGYTCSGGVAKNKMLAKLGSGYKKPNQQTVIRNRAIKHFLSDMK 300
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
K++ LGGKLG G V L++ ++L++ G +TG+WL+NI RG EV
Sbjct: 301 FTKIRMLGGKLGDEAVAMFGTDLVKSLMEQPLEQLKK-LGDDTGSWLYNIIRGEDHSEVN 359
Query: 245 ARLLPKSHGSGKSF 258
R KS S KSF
Sbjct: 360 PRTQIKSMLSAKSF 373
>gi|302755030|ref|XP_002960939.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
gi|300171878|gb|EFJ38478.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
Length = 294
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 30/250 (12%)
Query: 9 DEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAA 68
DEAK C + L+ DL+ YR A ++ ++ R G E+ +DE +D+T+
Sbjct: 62 DEAKRCCSDLVLIN------GEDLTPYRYASKLIMEVIKRFGTVEKRGLDECAVDVTEEV 115
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
+A P S H+LG G+ + A D LL G
Sbjct: 116 LKRVASANPTSF--------VGHVLG-----GDLTT----------QATQGDLLLMVGTQ 152
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP+ K+
Sbjct: 153 LAAEIRCAVEKETGYQCSCGISHNKMLAKMACSLNKPNKQTCITQSAVNDFIVPLPVCKI 212
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + +L+ E+GV T+GD+ + +L +G G L++ RG VQ +
Sbjct: 213 PGVGRQTEATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGF 271
Query: 249 PKSHGSGKSF 258
KS SF
Sbjct: 272 SKSLSVEDSF 281
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 142/332 (42%), Gaps = 47/332 (14%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVVSILARK-- 49
EA+ +CP++ V +A K L YR ++ ++
Sbjct: 101 EARRLCPELIAQHVATWREGDDKWAYREDAAEHIATDKVSLDPYRLESRRIMRVIKEHLP 160
Query: 50 ----GRCERASIDEVYLDLTDAAEAMLAETPPESLD------EVDEEALKSHILGLESK- 98
+ E+ASIDEV+LDLT ++ E E L +V EE + L+ K
Sbjct: 161 GGGLQKVEKASIDEVFLDLTAHVHQVMLERYGEELGGPPPYGDVSEELPMPVVTALDWKA 220
Query: 99 -------DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
+G+ + D D D L IV +R + ++ ++CSAG++
Sbjct: 221 DALVDLGEGDRQEGEFD------DPDWDDVALLVASEIVRNVRGVIREKLGYSCSAGVSR 274
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
NK+L+KL S KP QQT + +V L K++ LGGKLG + + V DL
Sbjct: 275 NKLLSKLGSAHKKPDQQTVIRNRAVGHFLSGFKFTKIRNLGGKLGEQVADAFKTEAVSDL 334
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
L ++L++ G G W++ RGI EV + KS S KSF + TV
Sbjct: 335 LTVPIEQLKQKLGDENGVWIYETLRGIDTSEVNSGTQIKSMLSAKSFRPD--ITTVEQAT 392
Query: 272 HWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 302
WL ++ RL + + ++KR T+ LH
Sbjct: 393 KWLRIFAADIFARLVEEGVLEHKRRPKTINLH 424
>gi|197244663|dbj|BAG68958.1| DNA polymerase eta [Coprinopsis cinerea]
Length = 641
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 155/362 (42%), Gaps = 56/362 (15%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 50
+A + CP +++V V + K L YR ++ ++ L
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 51 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVDEEALKSHILGLESK----- 98
E+ASIDE ++D T +L A+ PP++ + VD +
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPDAPNGVDTPLPPPPPISWYGTGDLIP 219
Query: 99 ------DGNDSKATVKEWLCR-------------CDADHRDKLLACGVLIVTELRMQVLK 139
+G D +T K+ + D L+ +V + R VL+
Sbjct: 220 LTTGPTEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHDVALSIAAGMVMKARKGVLE 279
Query: 140 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 199
+ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGGKLG +L
Sbjct: 280 QLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGGKLGRAL 339
Query: 200 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LLPKSHGSGKS 257
E TVGDLL S D++Q +G ++ W++ I RGI EV+ + L KS + K+
Sbjct: 340 AQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRGIDRSEVKDKGTTLTKSMLASKN 398
Query: 258 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKK 316
P P + + HW+ L EL+ RL + + + + LHA S +
Sbjct: 399 LPKP--ITAASEGYHWIRVLAAELALRLNEARQISPNLWPKNIVLHARKGYESSRSKQAV 456
Query: 317 FP 318
FP
Sbjct: 457 FP 458
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 105/189 (55%), Gaps = 21/189 (11%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAA 68
EAK++ P ELV V +R K L YR A V+S LA R ERASIDE Y+D+T
Sbjct: 64 EAKKLVP--ELVCVHQSR-KVSLRRYRRASWRVMSALADRCEHVERASIDEAYVDVTREV 120
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDG-NDSKATVKEWLCRCDADHRDKLLACGV 127
+A + +DE+ +DG N S A V L ++H D LA G
Sbjct: 121 DAAIDGRTNAEIDEM-------------VRDGVNASGAVVP--LTPSTSEH-DMRLAIGA 164
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
I +R VL +T FT S G+AHNKMLAKLAS NKP +QT V +V +++SLP++
Sbjct: 165 HICAGIRAAVLHQTGFTMSGGVAHNKMLAKLASARNKPNKQTAVSARAVTEMMESLPMRS 224
Query: 188 MKQLGGKLG 196
+K LGGKLG
Sbjct: 225 IKGLGGKLG 233
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 140/309 (45%), Gaps = 62/309 (20%)
Query: 9 DEAKEVCPQIELVQVPV-------------ARGKADLSSYRNAGSEVVSIL-ARKGRCER 54
D+AK+ CPQI L V KA L YR A ++ +IL + E+
Sbjct: 62 DDAKKKCPQIHLPHVDTLGKNCKPGQLFDRTHQKAILRRYRIASRDIFAILGSMVPIIEK 121
Query: 55 ASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 114
ASIDE ++D+TD A+ +A+T + C+
Sbjct: 122 ASIDEAFMDVTDMAKERIAQTV---------------------------------YFCQD 148
Query: 115 DADHRDKLLAC-GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
A+H K L C G +I E+R + + +TCS GIA NK+LAKLAS +NKP Q V
Sbjct: 149 PANHDTKRLLCIGAVISREIRQAIYNKLGYTCSTGIAGNKLLAKLASPLNKPNGQVVVAS 208
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V L+ SLP++K++ LGGKLG L+ T G+ K KL ++ F L
Sbjct: 209 RFVIDLMKSLPMRKIRGLGGKLGKQLE------TAGESFK----KL-SAHTFLQRCGLIE 257
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
+A+ + G+E A + GS + P K V + LCEE+ R + +NK
Sbjct: 258 LAKHV-GQETAAYVHSICQGSDDNEPVEE--KKVQVKITGVRLLCEEVVIRCEDERIENK 314
Query: 294 RIAHTLTLH 302
R L++
Sbjct: 315 RFPSQLSIQ 323
>gi|159484140|ref|XP_001700118.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
gi|158272614|gb|EDO98412.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
Length = 873
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 129/285 (45%), Gaps = 35/285 (12%)
Query: 2 VVSSMRGDEAKEVCPQIELVQV-PVARGKADLSSYRNAGSEVVSILARKGRCERASIDEV 60
V MR EAK++CPQ+ LV V ++ G + S A +++++L
Sbjct: 69 VTRHMRVREAKKLCPQLRLVHVETISAGDGESGSPVKASGQIMALLG------------- 115
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+ML + + + + KA+V E
Sbjct: 116 ---------SMLRPSAAATAATAAGGGAATATGPVSGGGCLLEKASVDEAFLDVS----- 161
Query: 121 KLLAC----GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
L+AC G LI LR V ++ FTCSAG++ NK+LAK+ S NKP +QT V V
Sbjct: 162 PLVACSPCGGGLIAQRLRRAVYEQLGFTCSAGVSVNKLLAKVGSARNKPDKQTLVLPRGV 221
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
+ +L LP+ K++ LGGKLG +L+ +LG T G + LQ G +G W+W + R
Sbjct: 222 QDMLTDLPLGKLRGLGGKLGAALEGQLGAATAGQAAALPLEALQRVLGERSGLWVWQVVR 281
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
G E V + PKS S KSF A +Q WL L EEL
Sbjct: 282 GQCSEPVTPKDKPKSLLSCKSF---EPTSAPAELQRWLLILAEEL 323
>gi|395332120|gb|EJF64499.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 725
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 36/292 (12%)
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
D L+ ++ +R + + +T SAG+A NK LAKL + KP QT + +++
Sbjct: 282 DVALSIAAELMMRIREDIRTKLGYTTSAGLARNKFLAKLTASYKKPMNQTILRNAAIPNY 341
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L +P +K++ LGGKLG +L E V+TV DLL S +++Q +G N+ W++ I RGI
Sbjct: 342 LRPMPFQKIRFLGGKLGKALAEEYDVSTVSDLLTISLEEMQRKFGENS-IWVYEILRGID 400
Query: 240 GEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AH 297
EV+ + + KS + K+ P P + A HW+ L EL+ RL + N +
Sbjct: 401 RTEVKEKSAVNKSMLASKNLPQP--ITKAAEGYHWIRVLAAELALRLNEARDSNPALWPK 458
Query: 298 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG------ 351
T+ LH R+ Y T + ++ F ++ + + SFG
Sbjct: 459 TIVLHI----------RRG---------YETMRSKQTPFPFTRSVTVDVIASFGDKLWKE 499
Query: 352 -VKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLP 402
V T GS + ++IT + +S S I + +G +I + + + EQ+P
Sbjct: 500 LVGTAGS--TPFKITNVQLSFSGIGTMEAGQRTIEGFLSA---RTACDEQIP 546
>gi|405952422|gb|EKC20236.1| DNA polymerase iota [Crassostrea gigas]
Length = 734
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 136/302 (45%), Gaps = 35/302 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V M +AKE CPQ+ LV DL++YRN ++ L + + ER +DE
Sbjct: 88 VTKLMYIKDAKEKCPQLVLV------SGEDLTNYRNMSYKISEFLLKYTQYVERLGMDEN 141
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+++ E M +TP + H+ G DS E +C C R
Sbjct: 142 YLDVSELVECMKDKTPL---------TVAGHVFG-------DSNQDSPEDICTCGCYER- 184
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ G I E+R + KE TC AGIAHNK+L+KL +KP QQTT+ +
Sbjct: 185 --ILIGSHIAEEIRAALYKEMGITCCAGIAHNKLLSKLVGEQHKPNQQTTLFSHHASTFM 242
Query: 181 DSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
LP + + +G L E GV T+ DL + + L+ G +T + ++ GI
Sbjct: 243 SKLPKARSIPGVGSATARRLA-EFGVVTMTDLQQCPLEDLKRELGGSTAVTIKELSEGID 301
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P++ SF K+ SV+ NQ +EL + L L ++ R+A T+
Sbjct: 302 ENPVIPYSKPQTLSDEDSF------KSCCSVKEA-NQKIKELVKSLMIRLVEDGRVAGTV 354
Query: 300 TL 301
L
Sbjct: 355 RL 356
>gi|409078314|gb|EKM78677.1| hypothetical protein AGABI1DRAFT_121111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 674
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 159/383 (41%), Gaps = 84/383 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI 45
+ +R EA ++CP +++V V + K L YR E V I
Sbjct: 117 ITRMIRLKEALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYRR---ESVKI 173
Query: 46 LARKGRCERASIDEVYLDLTDAAEAML-------AETPPESLDEVD-----------EEA 87
AR + +RASIDE + D T + +L A P ++ +D E
Sbjct: 174 AAR-FKAKRASIDEAFFDYTKTVKGILLQRYPYLAHVPKDAEHGIDTPLPPPPQLKWAEL 232
Query: 88 LKSHILGL-----------ESKDGNDS-------------------KATVKEWLCRCDAD 117
H++ L ESK +DS K T + +
Sbjct: 233 GTGHVVPLHRPPSEEENEAESKTISDSGISNGDETENSGETSDTAAKGTEFDEKEQFTTT 292
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
D L+ ++ E R QV +E +T SAGIA NK LAKL + KP Q+ + ++
Sbjct: 293 WHDVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIP 351
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L LP +K++ LGGKLG +L E V+T ++Q +G N W++ + RG
Sbjct: 352 SYLRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIWVYEVLRG 400
Query: 238 ISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI- 295
I EV+ + + KS + K+ P P +K + HW+ L EL+ RL E+N +
Sbjct: 401 IDRNEVKEKGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLW 458
Query: 296 AHTLTLHASAFKSSDSDSRKKFP 318
TL LHA + FP
Sbjct: 459 PKTLVLHARRAYDDGRSKQAPFP 481
>gi|393221247|gb|EJD06732.1| eta DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 695
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 28/319 (8%)
Query: 22 QVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE-------AMLAE 74
Q+P G+ + Y G + ++L E+ASIDE ++D + L+E
Sbjct: 155 QLPT--GEVGMEHYFMEGYAINAVLLITS-IEKASIDEAFIDFSIPVRDELLKRYPYLSE 211
Query: 75 TP---PESLDEVDEEALKSHILGL-------ESKDGNDSKAT---VKEWLCRCDADHRDK 121
P P D + +GL K + +AT ++E A +D
Sbjct: 212 PPVDSPSGPDTPLPPPPRISYIGLGNLIPIDPPKLDPEKEATTELIEEIEKDAPATWQDV 271
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LA ++ +R +V ++ + SAGIA NK LAKLA+ K Q + ++ G L
Sbjct: 272 GLAIAAELMASMRKEVHEKLGYLTSAGIARNKFLAKLAASYRKFNTQNILRNLAIPGFLK 331
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+P +K++ LGGKLG +L E V+TVGDLL +++Q +G W++ I RGI
Sbjct: 332 PMPFQKIRFLGGKLGKALATEYDVSTVGDLLHIGIEEMQSKFG-ECSVWVYEILRGIDRA 390
Query: 242 EVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTL 299
EV+ + ++ KS + K+ P P L + HW+ L EL+ RL E + TL
Sbjct: 391 EVKEKAVINKSMNASKNLPKP--LTDPSEGPHWIRMLAAELAIRLNEARENTPGLWPRTL 448
Query: 300 TLHASAFKSSDSDSRKKFP 318
+LH ++ FP
Sbjct: 449 SLHTCQGWHVRRSKQQAFP 467
>gi|213513962|ref|NP_001133709.1| DNA polymerase iota [Salmo salar]
gi|209155032|gb|ACI33748.1| DNA polymerase iota [Salmo salar]
Length = 757
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 149/325 (45%), Gaps = 38/325 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V M +AKE CPQ+ LV +G+ DL+ YR +V +L ER DE
Sbjct: 92 VTKLMLVTDAKEKCPQLVLV-----KGE-DLTHYRETSYKVTELLMSFCPLVERLGFDEN 145
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++D+T+ E + +TP E + + H+ L D +D+K V
Sbjct: 146 FMDITEMVERRMEQTP-----ESAHYSYEGHVYSL---DTSDAKVMVH------------ 185
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LLA G I ELR ++ + T AGIA +K+LAKL +G KP QQTT+ SVK ++
Sbjct: 186 PLLAVGSHIAAELRAEIHSKLGLTGCAGIATSKLLAKLVAGTFKPNQQTTLLPESVKDIM 245
Query: 181 DSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
SL ++K+ +G + LQ LG+ V DL F L +G +T L N+A GI
Sbjct: 246 GSLNGLRKVPGVGHQTAKRLQ-ALGLVGVQDLQLFPLADLVREFGVSTAQRLQNLALGID 304
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S SF + + + V + L L +R+ D Q + T+
Sbjct: 305 DTPVTPTGAPQSLSDEDSF---KKMSSTNEVWQKVKDLLSSLLDRMHKDGRQPFTLRLTI 361
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL 324
+++ K +SR+ CP+
Sbjct: 362 RRYSATNKWFSRESRQ------CPI 380
>gi|443895989|dbj|GAC73333.1| protein involved in establishing cohesion between sister chromatids
during DNA replication [Pseudozyma antarctica T-34]
Length = 846
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
D LA G ++ +R VL E +T SAGIA NK LAKL S KP QT + SV
Sbjct: 393 DVALALGAELLNRVRQNVLDELNYTTSAGIACNKTLAKLCSSWRKPNGQTIMRPCSVANF 452
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
SLP +K++ LGGKLG ++ E TV DL + D++Q +G W++N+ RGI
Sbjct: 453 YSSLPFQKIRFLGGKLGNAMGLEWNSATVSDLWQVGLDEMQAKFG-EEARWVYNVLRGID 511
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHT 298
EV+ R+ ++ + KS A+ HWL+ L EL+ RL E+ + T
Sbjct: 512 YSEVRERVNNQTMLASKSVRP--AITKPEEAMHWLSILATELAIRLREAREERTNLWPKT 569
Query: 299 LTLHASAFKSSDSDSRKKFP 318
L L S + FP
Sbjct: 570 LVLRYIRAGSVPRSRQTAFP 589
>gi|426199305|gb|EKV49230.1| hypothetical protein AGABI2DRAFT_184029 [Agaricus bisporus var.
bisporus H97]
Length = 672
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 158/390 (40%), Gaps = 90/390 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI 45
+ +R EA ++CP +++V V + K L YR E V I
Sbjct: 107 ITRMIRLKEALKLCPHLKVVHVATYKEGDAQPAYWDTVDTNTHKVSLDYYRR---ESVKI 163
Query: 46 LAR-------KGRCERASIDEVYLDLTDAAEAML-------AETPPESLDEVD------- 84
AR ERASIDE + D T + +L A P ++ +D
Sbjct: 164 AARFKASLPTSVEIERASIDEAFFDYTKTVKEILLQRYPYLAHVPKDAEHGIDTPLPPPP 223
Query: 85 ----EEALKSHILGL-----------ESKDGNDS-------------------KATVKEW 110
E H++ L ESK +DS K T +
Sbjct: 224 QLKWAELGTGHVVSLHRPPSEEENEAESKTISDSGISNDGETENSGETSDTVAKGTEFDE 283
Query: 111 LCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 170
+ D L+ ++ E R QV +E +T SAGIA NK LAKL + KP Q+
Sbjct: 284 KEQFTTTWHDVALSIAAELMGEARAQV-REMGYTTSAGIARNKFLAKLTASYKKPNSQSI 342
Query: 171 VPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW 230
+ ++ L LP +K++ LGGKLG +L E V+T ++Q +G N W
Sbjct: 343 LRNGAIPSYLRPLPFRKIRFLGGKLGEALAKEYDVST----------EMQNKFGEN-AIW 391
Query: 231 LWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
++ + RGI EV+ + + KS + K+ P P +K + HW+ L EL+ RL
Sbjct: 392 VYEVLRGIDRNEVKEKGKVNKSMLASKNLPKP--IKNTSEGHHWIRVLAAELALRLNDAR 449
Query: 290 EQNKRI-AHTLTLHASAFKSSDSDSRKKFP 318
E+N + TL LHA + FP
Sbjct: 450 EENPNLWPKTLVLHARRAYDDGRSKQAPFP 479
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 130/305 (42%), Gaps = 64/305 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G +A+ +CP++ V K YR ++ I +
Sbjct: 58 VRSAMSGVQARRLCPELVFV-------KPRFDRYREVSRQIRGI---------------F 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
L+ TD E P SLDE D K
Sbjct: 96 LEYTDLVE-------PLSLDE-----------------------------AYLDVTANRK 119
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++L+ET T SAGI+ NK +AK+AS NKP Q TVP V+ L+
Sbjct: 120 GMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SL I+K + GK+ N LG+ T DL + SE L +G +G + + RG+
Sbjct: 180 SLEIRKFHGV-GKVTAEKMNALGIFTGADLRRQSEHFLTGHFG-KSGHHYYRVVRGVHDS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
VQ +PKS G+ ++F L + + L ++ EELS RL + K I TL +
Sbjct: 238 PVQPSRVPKSLGAERTF--SENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTI--TLKI 293
Query: 302 HASAF 306
S F
Sbjct: 294 RYSDF 298
>gi|429859010|gb|ELA33810.1| sister chromatid cohesion protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 567
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 168/420 (40%), Gaps = 89/420 (21%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR------------------GKADLSSYRNAGSEVVSILA 47
M DEA+ +CP I L VP R KA L YR + + ++
Sbjct: 88 MSADEARRICPDIVLQHVPTWREGDDRWRYRDDVLDHLKTDKASLDPYRGVSRKTMHLVR 147
Query: 48 R------KGRCERASIDEVYLDLTDAAEAMLAETPP------ESLDEVDEEALKSHILGL 95
+ ERA +DE YLDL+ L E P +SLD + L L
Sbjct: 148 KLLPAKPAPTIERAGVDEFYLDLSAQVHRTLVERFPTLTPTNKSLD---------NYLPL 198
Query: 96 ESKDGNDSKATVKEWLCRCDADHRDKLL-------------------ACGVLIVTELRMQ 136
+ D T +W +DK++ + G IV +R +
Sbjct: 199 PAAD------TALQW-------SKDKIMIPADLQDPDDVLDWDDVVLSIGGSIVRHIREE 245
Query: 137 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 196
+ K+ + T SAGI+ NKMLAK AS MNKPA QT + S+ ++ +L + LG +LG
Sbjct: 246 IKKQLQLTTSAGISCNKMLAKAASRMNKPAGQTILRRKSIPIIMPTLKATSLSGLGRQLG 305
Query: 197 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 256
+ G + DLL+ S +++ G G W++N RG V+ R +S + K
Sbjct: 306 QKVVKTFGSDNIRDLLQVSLTEMRLQLGAEDGQWVYNAIRGDEKGPVRPRSEVQSLLAAK 365
Query: 257 SFPGPRALKTVASVQHWLNQLCEELSERLCS-DLE-QNKRIAHTLTLHASAFKSSDSDSR 314
+F P+A + + WL +L RL DL+ + R T+ +H +R
Sbjct: 366 TF-IPKA-ENLQQADKWLRIFAADLESRLHDLDLDSEVPRRPRTIAVH-HHINGRFGPTR 422
Query: 315 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 374
SK P+ +E F + LR+ H W +SVS S +
Sbjct: 423 ----SKQAPISPQIEINKESIFTMLHDLLRDL---------TEHGESWPCLGVSVSMSNL 469
>gi|323507618|emb|CBQ67489.1| related to DNA polymerase eta [Sporisorium reilianum SRZ2]
Length = 831
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
Query: 99 DGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 158
D DS+A + + + + D LA G ++ +R VL E +T SAGIA NK L+KL
Sbjct: 375 DDLDSEAALWDRIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIASNKTLSKL 434
Query: 159 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 218
S KP QT + SV SLP +K++ LGGKLG ++ E TV DL + D+
Sbjct: 435 CSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGIEWNSATVADLWQVGLDE 494
Query: 219 LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 278
+Q +G W++N+ RGI EV+ R+ ++ + KS A+ HWL L
Sbjct: 495 MQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITRPEEAIHWLGILA 551
Query: 279 EELSERL 285
EL+ RL
Sbjct: 552 TELAIRL 558
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 10 EAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILAR---KG 50
EA + CP + LV V A G K L YR ++++SI + G
Sbjct: 172 EALKKCPDLHLVHVATYAHGSNRADYHPDPKPETHKVSLDPYRRESTKILSIFKKTCPHG 231
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEW 110
E+ASIDE Y DLT ++ E P ++A+ + + G++ + +K+W
Sbjct: 232 AVEKASIDESYFDLTIEVRKLMVERFPHLAQPPADDAV-AGVKGMDQPLPPPPRLGLKQW 290
>gi|452984835|gb|EME84592.1| hypothetical protein MYCFIDRAFT_203083 [Pseudocercospora fijiensis
CIRAD86]
Length = 667
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 151/361 (41%), Gaps = 73/361 (20%)
Query: 10 EAKEVCPQIELVQVP------------------VARGKADLSSYRNAGSEVV-----SIL 46
EAKE CP I V +A K L YR +++ S+
Sbjct: 98 EAKEKCPDIICQHVATWKEGDTKWSYSDDAFKEIATRKVSLDPYRIESRKILATIKESLP 157
Query: 47 ARKGRCERASIDEVYLDLTDAAEAMLAETPPE-----SLDEVDEEALKSHILGLESKDGN 101
A K + E+ASIDEV+LDL+ ++L + P+ D+ E K L+ K
Sbjct: 158 ADKQKVEKASIDEVFLDLSAHVHSLLLQRYPQLDAPPPYDDPTEPLPKPPTTALDWKADA 217
Query: 102 --DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 159
D T E D D D ++ IV ++R Q+ ++ ++TCSAGI+ NKMLAKL
Sbjct: 218 LVDLDNTHNE---EDDPDWDDVVMLIASEIVRDVRAQIFRKLKYTCSAGISRNKMLAKLG 274
Query: 160 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 219
SG GGK G + +V +LL S ++L
Sbjct: 275 SG---------------------------SATGGKFGDEVVAAFNTDSVSELLAVSIEQL 307
Query: 220 QESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGPRALKTVASVQHWLNQLC 278
++ G +G+WL+N+ RG EV R KS S KSF P + + WL
Sbjct: 308 KKQLGDGSGSWLYNVIRGEDDSEVNPRTQIKSMLSAKSFRPSINSFEVACK---WLRIFV 364
Query: 279 EELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN 337
++ RL + + +NKR T+ +H + +R SK P+ G ++ F+
Sbjct: 365 ADIFGRLVEEGVLENKRRPKTINIH----HRQGAQTR----SKQAPIPLGKTVTEDALFD 416
Query: 338 L 338
L
Sbjct: 417 L 417
>gi|405120879|gb|AFR95649.1| eta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 704
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 140/328 (42%), Gaps = 64/328 (19%)
Query: 9 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK--- 49
++AK++CPQ+ + V R K L YR ++++I K
Sbjct: 89 EDAKKMCPQLRIQHVATYRNGESEAGYWDDVNPRTHKVSLDVYRRESLKILAIFKEKIPR 148
Query: 50 GRCERASIDEVYLDLTD-------AAEAMLAETP---PESLDEV---------------- 83
G E+ASIDE +LDLT AA L++ P P LD
Sbjct: 149 GEIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVF 208
Query: 84 -----DEEALKSHILGLESKDGNDSKATVKEWLCRCDADH-RDKLLACGVLIVTELRMQV 137
++ + H G + +G++ R + D D L G +++ +R +V
Sbjct: 209 PIDGKEDGSGMGHEEGRQEDEGSEDGDESDGRTSRSNRDSWEDWALCMGGELMSNVREEV 268
Query: 138 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 197
+TC+A L S KP QT + ++V L+ ++ LGGKLG
Sbjct: 269 YLRLHYTCTA----------LCSAWKKPNNQTILRTAAVPAFLNDRDFTDIRSLGGKLGA 318
Query: 198 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 257
++ E G TVGD+L S D++Q+ +G W++NI RGI EV R+ KS + KS
Sbjct: 319 AIAQEFGAKTVGDMLTVSLDEMQKKFG-EESIWVYNILRGIDHSEVTERVTTKSMLASKS 377
Query: 258 FPGPRALKTVASVQHWLNQLCEELSERL 285
A+ + WL+ L EL+ RL
Sbjct: 378 IRP--AVTSPQQGHQWLSILAGELNVRL 403
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 140/328 (42%), Gaps = 63/328 (19%)
Query: 8 GDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSILARKGR 51
+ AK+ CP++ L V + K L YRN +++ IL++ +
Sbjct: 80 AENAKKKCPELNLAHVQTWKVGEREPKYHEKPEWESHKVCLDMYRNESKKILGILSKYSK 139
Query: 52 -CERASIDEVYLDLTDAAEAMLAE------TPPESL-------------DEV-----DEE 86
++ASIDE ++DLT + L + PPE L +E+ +EE
Sbjct: 140 LVKKASIDESFVDLTAEIKKKLIQDYSFLGVPPEDLSLPLPTAPTVLWTEELGRVFGEEE 199
Query: 87 ALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCS 146
L S E+K+G D W + L G IV E+R ++ +TCS
Sbjct: 200 GLLS-----EAKNGGD-------W--------DEVFLHYGARIVKEIRNEIFNTLGYTCS 239
Query: 147 AGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVT 206
AGI+ N ML+K+ S NKP +QT + S V L + + +++ GGK G L +L
Sbjct: 240 AGISRNAMLSKILSSKNKPNKQTVLLNSMVDHYLADVRLSELRLFGGKYGEELGKKLNAE 299
Query: 207 TVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKT 266
+ D+ D+L G +WN+ GI E+ +S S K+F + LK+
Sbjct: 300 YIKDIRAIPMDELIRILGDRDAQVVWNVCNGIDNSEITNVNNTQSMLSAKNFLRSK-LKS 358
Query: 267 VASVQHWLNQLCEELSERLCSDLEQNKR 294
W +L R D+EQ KR
Sbjct: 359 SEEAMKWFRVFASDLMSRYM-DVEQIKR 385
>gi|403337853|gb|EJY68151.1| DNA polymerase eta [Oxytricha trifallax]
Length = 606
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 15/233 (6%)
Query: 29 KADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAAEAMLAETPPESL--DEVDE 85
K L+ YR ++ I+ R + E+AS DE Y+D+T+ + + E
Sbjct: 165 KVSLAKYREESKKIFGIVQRYSQLVEKASCDEAYVDVTNQVNLKYQQEHDNIFPKNYTTE 224
Query: 86 EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 145
S+ + +G L + ++ KL I +R + +E ++
Sbjct: 225 AWCNSYFMSYPKGEG----------LFIPETEYEKKLFIAN-QIAYSIRQDIKRELQYNA 273
Query: 146 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 205
S GI+HNK +AKLAS NKP QT VP +K + + I ++ GGK+G SL N G+
Sbjct: 274 SCGISHNKTMAKLASANNKPNAQTVVPIRYMKRAMKDVKIDSVRFCGGKVGESLHNA-GL 332
Query: 206 TTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
TT+G + + S + LQ +T W+ +++ GI EEV+ R LP + + K+F
Sbjct: 333 TTMGQIQETSIEDLQLIVSQSTAQWIKDLSDGICYEEVKERNLPTTANAVKTF 385
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 143/320 (44%), Gaps = 40/320 (12%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EAK+ CP + ++ DL+ YR S V +L R R ER +DE Y+D+++
Sbjct: 58 EAKKKCPDLVIIN------GEDLTKYREFSSRVTKLLRRFALRVERLGLDENYVDVSELV 111
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
+ + P S V G D N K + E +C C R L G +
Sbjct: 112 QERMKHAPRGSYIAV----------GCIYGD-NILKGSSNE-VCPCGCHER---LTVGSV 156
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +ELR + E T AGIAHNK+LAK+A NKP +QT + V+GL+ LP++K+
Sbjct: 157 IASELRKAIFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKV 216
Query: 189 KQLG----GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+G +LG+ LG+TT+ +L + S+ L + L ++ G +V
Sbjct: 217 PGIGRSTCARLGS-----LGITTIAELQECSKKALLNEFNSQEVRILHALSHGADDSQVS 271
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 304
+PKS S+ L ++ SV+ L L L R+ D H T+ +
Sbjct: 272 TDSMPKSISEEDSYSN---LCSLESVKTNLRVLIGNLIPRITED------TGHPQTVRLA 322
Query: 305 AFKSSDSDSRKKFPSKSCPL 324
+ + K S+ CP+
Sbjct: 323 IRRGGQAPGVYKKESRQCPV 342
>gi|390600437|gb|EIN09832.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 634
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 157/367 (42%), Gaps = 54/367 (14%)
Query: 3 VSSM-RGDEAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI 45
+S M + +AKE CP + V V + K L YR +V ++
Sbjct: 94 ISRMDKARDAKEKCPDLICVHVATYKEGAKEPGYWPNPDTRTHKVSLDHYRRESMKVAAM 153
Query: 46 LAR---KGRCERASIDEVYLDLTDAAEAM-------LAETPPESLDEVDE---------- 85
+G E+ASIDE ++D T M LA PP++ +D
Sbjct: 154 FKEGVPEGEVEKASIDEAFIDFTLPVRNMMLDRYPYLARVPPDAPHGLDSRLPPPPPIDW 213
Query: 86 --EALKSHILGLESKDGNDSKATVKEWLCRCDA--DHRDKLLACGVLIVTELRMQVLKET 141
+ + I ++ + +D E CDA D L+ ++ ++R + +
Sbjct: 214 SGKGVVVPIKPVDDEKTDDDDQNSDEDYDDCDAATTWHDVALSLAAELMQKIREDIHTKL 273
Query: 142 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK--MKQLGGKLGTSL 199
+T SAGIA NK LAKLA+ KP QT + S++ L + +K ++ LGGKLG +L
Sbjct: 274 GYTTSAGIARNKFLAKLAASYRKPMSQTILRNSAIPNYLRPMKFQKVSIRNLGGKLGEAL 333
Query: 200 QNELGVTTVGDLLKFS-EDKLQESYGFNTGTWLWNIAR-----GISGEEVQAR-LLPKSH 252
E TTVGDLL S D +Q +G W++ I R GI EV+ + ++ KS
Sbjct: 334 AQEFDATTVGDLLNVSLADVMQRKFG-EESLWVYEILRYNTRFGIDRSEVKEKSIVNKSM 392
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDS 311
+ K+ P A + HW+ L EL+ RL E + TL LH +
Sbjct: 393 LASKNLATPVAKPSEG--HHWIRVLAAELALRLNEARESRPGLWPKTLVLHVRQGYAQSR 450
Query: 312 DSRKKFP 318
+ FP
Sbjct: 451 SKQGPFP 457
>gi|299749828|ref|XP_001836363.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298408617|gb|EAU85452.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 669
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 145/340 (42%), Gaps = 67/340 (19%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 50
+A + CP +++V V + K L YR ++ ++ L
Sbjct: 100 DALKRCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESMKIAALFRELLPGC 159
Query: 51 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVDEEALK-------------- 89
E+ASIDE ++D T +L A+ PP++ + VD
Sbjct: 160 EVEKASIDEAFIDFTKPVREVLLQRYPYLAQVPPDAPNGVDTPLPPPPPISWYGTGDLIP 219
Query: 90 ------SHILGLESKDGNDSKATVKEWLCR-------------CDADHRDKLLACGVLIV 130
+ L +G D +T K+ + D L+ +V
Sbjct: 220 INPVPATSTLTTGPVEGQDQPSTSKQQPAEEAVHDEGLQDGEDANTTWHDVALSIAAGMV 279
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
+ R VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++
Sbjct: 280 MKARKGVLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRF 339
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR---GISGEEVQAR- 246
LGGKLG +L E TVGDLL S D++Q +G ++ W++ I R GI EV+ +
Sbjct: 340 LGGKLGRALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRQYSGIDRSEVKDKG 398
Query: 247 -LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
L KS + K+ P P + + HW+ L EL+ RL
Sbjct: 399 TTLTKSMLASKNLPKP--ITAASEGYHWIRVLAAELALRL 436
>gi|255079098|ref|XP_002503129.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
gi|226518395|gb|ACO64387.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
Length = 652
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 35/310 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLT 65
M +AK +CP++ LV DL+ YR +V + L R G CE+ +DE ++DLT
Sbjct: 109 MSTTKAKALCPEVALVS------GEDLTPYRACAKKVRAALERFGTCEKLGLDECWVDLT 162
Query: 66 DAAEAMLAETPP-------------ESLDEVDEEALKSHILGLESKDGNDSKATVKEWLC 112
+ +A P E + E D I ++ + N S
Sbjct: 163 AEVDRRIAAGGPASDPPLVGHRHSSEHVVESDNAHRPMDIRAVDPERTNASDGVHHPVPP 222
Query: 113 RCD--AD----------HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLAS 160
RC+ AD R++ L G I E R V T SAGIAHNKMLAKL S
Sbjct: 223 RCEDGADPDANPDVSDPARERRLRVGAAIAAEARDAVRSATGLRMSAGIAHNKMLAKLVS 282
Query: 161 GMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
G++KP QTT+P L+ LP++ + +G +L + GV T DL + + ++
Sbjct: 283 GLHKPDDQTTLPAGVAAKLVSPLPVRALPGVGHGAERTLVHR-GVRTAADLRRVTRSEVC 341
Query: 221 ESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE 280
E G G + + A G+ EEV + P SF R+ T +SV L + +
Sbjct: 342 EWLGPRVGRKVHDAAWGVDREEVAPKPAPNFVTCEDSF---RSCTTWSSVDAVLAVIAPD 398
Query: 281 LSERLCSDLE 290
L R+ + E
Sbjct: 399 LLARMDEEYE 408
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 152/360 (42%), Gaps = 73/360 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+ +CP + V+ R K S RN ++
Sbjct: 53 VHSAMSGVIARRLCPTLIFVKPRFERYKEISSRIRN----------------------IF 90
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D K
Sbjct: 91 YEYTDLVE-------PLSLDE-----------------------------AYLDVTTNKK 114
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L+ LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP S V L+
Sbjct: 115 NLSSATLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPSKVLSFLE 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L +KK + GK+ + G+ T DL S ++LQ +G N+G + + IARGI
Sbjct: 175 GLDVKKFYGI-GKVTAEKMYQKGIFTGADLRAKSLEELQSYFG-NSGEYFYQIARGIHLS 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
VQ L KS G +F K ++S + ++ + ++LSE + L + K +A T+TL
Sbjct: 233 PVQPFRLIKSIGVEHTFE-----KNISS-EIFMTEPLQQLSEEVSLRLSKKKLLAKTVTL 286
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGVKTQGSHY 359
K SD + + S++ P G + L+Q LRE + GV +Y
Sbjct: 287 -----KLKYSDFKIQTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNY 341
>gi|388852652|emb|CCF53815.1| related to DNA polymerase eta [Ustilago hordei]
Length = 874
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 3/184 (1%)
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
DS+A + + + + D LA G ++ +R VL E +T SAGI NK L+KL S
Sbjct: 396 DSEAALWDRIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSKLCSS 455
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
KP QT + SV SLP +K++ LGGKLG ++ E TV DL + D++Q
Sbjct: 456 WRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGVEWNSATVSDLWNVTLDEMQA 515
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
G W++N+ RGI EV+ R+ ++ + KS A+ HWL L EL
Sbjct: 516 KLG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITKPEEAMHWLTILATEL 572
Query: 282 SERL 285
+ RL
Sbjct: 573 AIRL 576
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 192/440 (43%), Gaps = 77/440 (17%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVP-VARG---------------KADLSSYRNAGSEVVSI 45
+ MR EA+++CP + + RG K L YR AG +V++I
Sbjct: 71 ITRHMRAPEAQKLCPNLVMAHAASFKRGEDMWEYHANPSADDYKISLDPYRQAGKKVLNI 130
Query: 46 LARKGRC-ERASIDEVYLDLTDAA--EAMLAETPPESLDEVDEEAL----KSHILGLESK 98
+ + E+AS+DE YLDL E M+A + LD + L ++H L +
Sbjct: 131 VKQYSSVVEKASVDESYLDLGPRIFNEIMIAFPQLQLLDNDLDNFLPAPPRAHELKIRGY 190
Query: 99 --DGNDSKATVKEWLCRCDADHR-----------DKLLACGVLIVTELRMQVLKETEFTC 145
DG V + + R D D R D +L G I +R QV +E ++TC
Sbjct: 191 NWDGLGVLEIVTD-VSRFDPDIRVHDDTMVTDWDDLVLMFGARISKRMREQVYEELKYTC 249
Query: 146 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGV 205
SAGIA + +AKLAS NKP QT V ++ L + + +GGKLG + +LG
Sbjct: 250 SAGIARCRSVAKLASAQNKPNNQTVVRAGALNNYLKKKSLTDIGGMGGKLGEEVLEKLG- 308
Query: 206 TTVGDLLKFSEDKLQESYGFNTGTW------------LWNIARGISGEEVQARLLPKSHG 253
L K S+D + + + ++N+ARG ++ R+ KS
Sbjct: 309 -----LDKESKDNITQVQALSKQQLQQKLQNASLTEKVFNLARGNLYRGLKTRIELKSML 363
Query: 254 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK-----RIAHTLTLHASAFKS 308
S K+F LK + WL EL+ R+ +E K R T++L + FK
Sbjct: 364 SAKNF-ARVPLKDRKEAELWLVVFAGELAMRI---VEHEKELGTCRRPRTVSLQHARFKP 419
Query: 309 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 368
SR+ + PL + T K++E+ LF AG++ + + + I+ LS
Sbjct: 420 MVKRSRQ----QDLPLVH-TNKLKEE---LFAAGVK----LLKLIENEPEHDAYPISMLS 467
Query: 369 VSASKIVPVLSGTCSIMKYF 388
+S + V + +G SI +F
Sbjct: 468 LSVTGFVELPAG-ASIGHFF 486
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MTVKDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DE+ + H+ N+ + + L +LL
Sbjct: 155 TEIVEKRLQQLPS---DELSAATVSGHVY-------NNQPVNLHDVL-------HIRLLV 197
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLN 256
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G V
Sbjct: 257 HIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 315
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 316 IPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLII 368
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
F S R+ S+ CP+
Sbjct: 369 RRFSSGKLCGRE---SRQCPI 386
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 133/317 (41%), Gaps = 66/317 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G AK+ CP EL+ +P YR + I E++
Sbjct: 60 VRSAMSGVVAKKRCP--ELIFMP-----PRFERYRQISQQ---------------IREIF 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
TD E P SLDE D H K
Sbjct: 98 YQYTDLVE-------PLSLDE-----------------------------AYLDVTHNKK 121
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI TE+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV F V+ LD
Sbjct: 122 NCPSATLIATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSFDEVQDFLD 181
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L +K+ + GK+ T G+ T DL S L+E +G N + + +ARGI
Sbjct: 182 VLDVKRFYGI-GKVTTEKMYLKGIFTGKDLRNKSLSFLEEHFG-NHAIYYYQLARGIHLS 239
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ LPKS G+ ++F + + + ++ L + +EL ER+ K I TL +
Sbjct: 240 EVKPLRLPKSVGAERTF--SKNITSEVFMEKDLYAIAQELHERMAKKGVSGKTI--TLKI 295
Query: 302 HASAFKSSDSDSRKKFP 318
S F S K FP
Sbjct: 296 KYSDF--SVQTRSKTFP 310
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MTVKDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DE+ + H+ N+ + + L +LL
Sbjct: 155 TEIVEKRLQQLPS---DELSAATVSGHVY-------NNQPVNLHDVL-------HIRLLV 197
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLN 256
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+T+V DL FS L++ G + + ++ G V
Sbjct: 257 HIKEMPGVGYKTTKRLE-ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 315
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + V+ + +L L R+C Q+ R HT+ L
Sbjct: 316 IPSGPPQSFSEEDSF---KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLII 368
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
F S R+ S+ CP+
Sbjct: 369 RRFSSGKLCGRE---SRQCPI 386
>gi|71003135|ref|XP_756248.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
gi|46096253|gb|EAK81486.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
Length = 865
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 3/185 (1%)
Query: 98 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
+D DS+A + + + + D LA G ++ +R VL E +T SAGI NK L+K
Sbjct: 381 QDDLDSEAALWDHIEYGETTWTDVALALGAELMNRVRQNVLDELGYTTSAGIGSNKTLSK 440
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L S KP QT + SV SLP +K++ LGGKLG ++ E TV DL D
Sbjct: 441 LCSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLGNAMGAEWNSATVSDLWGVGLD 500
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
++Q +G W++N+ RGI EV+ R+ ++ + KS A+ HWL+ L
Sbjct: 501 EMQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASKSVRP--AITKPEEATHWLDIL 557
Query: 278 CEELS 282
EL+
Sbjct: 558 STELA 562
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 25 VARGKADLSSYRNAGSEVVSIL-----ARKGRCERASIDEVYLDLTDAAEAMLAETPPES 79
+A K L YR +++ + A + E+AS+DEV++DL+ ++L E PE
Sbjct: 73 IATHKVSLDPYRLESRRILACIKETLPADLQKVEKASVDEVFMDLSAQVHSILLERYPEI 132
Query: 80 LDEVDEEALKSHILGLESKDGNDSKA-----TVKEWLCRCDADHRDKLLACGVLIVTELR 134
+ + L L D +A E D D D + G IV +R
Sbjct: 133 SGPAPYDD-PTEYLPLPPSTALDWQADALIDLDVEETEDDDPDWDDVAILIGSEIVRNVR 191
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 194
V ++ ++TCS G+A NKMLAKL S KP QQT V +V+ L L K++ LGGK
Sbjct: 192 AAVREKLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIVRNRAVQQFLSDLKFTKIRGLGGK 251
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
LG + + V DLL ++L++ G +TGTW++ I RG
Sbjct: 252 LGEQITSSFNTDNVKDLLPIPIEQLKQKLGDDTGTWVYQIIRG 294
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 136/322 (42%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G AK++CP + V K YR ++ RA E Y
Sbjct: 53 VRSAMAGAMAKQLCPSLIFV-------KPRFDRYREVSMQI-----------RAIFHE-Y 93
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
DL + P SLDE D K
Sbjct: 94 TDLVE----------PLSLDE-----------------------------AYLDVTTNKK 114
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP + L
Sbjct: 115 DLPSATLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQEILDFLA 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IKK + GK+ + G+ T DL S ++LQ +G N G + + IARGI
Sbjct: 175 PLDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKSLEELQTYFG-NNGEYFYQIARGIHLS 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
VQ L KS G +F +T + + +L + +EL E + L++ K +A T+TL
Sbjct: 233 AVQPFRLRKSIGVEHTF------ETNITSERFLEKPLKELCEEVALRLKEKKLLAKTVTL 286
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD +++ S+S P
Sbjct: 287 -----KLKYSDFKQQTRSRSIP 303
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 44/301 (14%)
Query: 29 KADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE-SLDEVDEE 86
K L +YR +V+ I+ K E+AS+DE Y+DL +L E PE +++ ++E
Sbjct: 135 KVSLDNYRRESRKVLRIIQSKFDLVEKASVDESYIDLGRPIYEILLEKFPELNINAGNDE 194
Query: 87 ALKS-----------HILGLESKD-----GNDSKATVKEWLCRCDADHRDKLLACGVLIV 130
+L S H +ES+ N + +W D +LA G +
Sbjct: 195 SLPSIPKTLPQDIQWHGTVIESEREIADPQNVQPPQIFDW--------DDVVLAIGSQFL 246
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
+LR + E +T SAG+A NK++AKL+ G KP QT V ++ L + + +
Sbjct: 247 LDLRQAIYDELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCALNRFLSNFELTDVTG 306
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-----------GTWLWNIARGIS 239
+GGKLG L N+ V + + F ++E+Y F+ L+ I RG+
Sbjct: 307 MGGKLGEQLINKFEVPPDRNSIAF----IRENYTFDMVKQELREDAELALKLYQIVRGLY 362
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
E+ R+ KS S K+F G + T+A WL +LS RL +DL+ N+ + +L
Sbjct: 363 SSELTDRIEIKSMMSTKNFLGSKGW-TLADAYDWLTVFSGDLSNRL-TDLD-NESMELSL 419
Query: 300 T 300
T
Sbjct: 420 T 420
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 47/307 (15%)
Query: 26 ARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE----SL 80
A K L +YR +++ ++ K E+AS+DE Y+DL L E P+
Sbjct: 132 AHHKVSLDNYRRESRKIIRLIQSKFDFVEKASVDESYIDLGRPVYGTLLEKFPQLKCRIS 191
Query: 81 DEVDEEALKSHILGL---------------ESKDGNDSKA-TVKEWLCRCDADHRDKLLA 124
D D+E L S L E D D +A + +W D +LA
Sbjct: 192 DASDDEVLPSIPDKLPQDIQWYGTIIESEKELADPQDIQAPQIFDW--------DDVVLA 243
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G ++ +LR + E +T SAG+A NK++AKL+ G KP QT V ++ L++
Sbjct: 244 IGSELLLDLRQSIHDELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCALNRFLNNFE 303
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-----------GTWLWN 233
+ + +GGKLG L N GV + + F ++E+Y ++ L+
Sbjct: 304 LTDVTGMGGKLGEQLINRFGVPPDRNSIAF----IRENYSLSSVKEEIKEDPDLALKLYK 359
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
I RG+ E+ R+ KS S K+F G R T+A WL +LS RL +DL+ N+
Sbjct: 360 IVRGLHPSELTDRVEIKSMMSTKNFLGTRNW-TLADAYDWLTVFSGDLSNRL-TDLD-NE 416
Query: 294 RIAHTLT 300
+ +LT
Sbjct: 417 SMELSLT 423
>gi|260813031|ref|XP_002601223.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
gi|229286515|gb|EEN57235.1| hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae]
Length = 397
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 135/314 (42%), Gaps = 45/314 (14%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V M +AKE+CP++ LV+ DL+ YR + L + ER DE
Sbjct: 62 VTKLMGIKQAKELCPELVLVK------GEDLTHYREMSYRITVTLQKFSPLVERLGFDEN 115
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++D+T+ +A L T L+ HI +G R
Sbjct: 116 FVDVTETVDARLKSTFSPQLN--------GHIFPEMEIEGTYE---------------RH 152
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
K LACG I E+R + + TC AGIAHNK+LAKL +G +KP QQT++ V L+
Sbjct: 153 KRLACGSQIAAEMRQALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGKLM 212
Query: 181 DSLPI-KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+L + + +G + LQ LG++TV DL D LQ +G T + + RG+
Sbjct: 213 GTLKTARNIPGIGSRTFKRLQT-LGISTVQDLQDAPADVLQAEFGSQTAQVMQQLCRGVD 271
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQ---HWLNQLCEELSERLCSDLEQNKRIA 296
V P++ SF K AS+Q + L + L +RL D R
Sbjct: 272 PSPVTPTGPPQTISDEDSF------KKCASLQDAKERMTGLLQSLMKRLKGD----GRFP 321
Query: 297 HTLTLHASAFKSSD 310
H L + +S+
Sbjct: 322 HVLRVTVRKLSASN 335
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 126 MNVRDAKEKCPQLVLVN------GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 179
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +++ D H L
Sbjct: 180 TEMVEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDILHIR--LL 221
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 222 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQSLN 281
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+K+M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 282 HVKEMPGIGYKTAKRLE-ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 340
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + V++ + +L L R+C Q+ R HT+ L
Sbjct: 341 TPSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTIRLII 393
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S + SR+ S+ CP+
Sbjct: 394 RRYSSENHCSRE---SRQCPI 411
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 148/359 (41%), Gaps = 71/359 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+++CPQ+ V K YR ++ +I +
Sbjct: 53 VRSAMAGTTARQLCPQLIFV-------KPRFERYREISMQIRTI---------------F 90
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D
Sbjct: 91 YEYTDLVE-------PLSLDE-----------------------------AYLDVTTNKM 114
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI ++R ++ ++T T SAGI+ NK +AK+AS NKP Q TVP V L
Sbjct: 115 DMPSATLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEEVLDFLA 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IKK + GK+ + G+ T DL + ++LQE +G N G + + IARGI
Sbjct: 175 QLDIKKFYGI-GKVTAQKMYQKGIFTGADLRAKTLEELQEYFG-NNGEYFYQIARGIHLS 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
VQ L KS G +F + + ++ L +LCEE+++RL K + TL L
Sbjct: 233 PVQPFRLVKSIGVEHTFET--NISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTV--TLKL 288
Query: 302 HASAFK-SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 359
S FK + S + F S + +++ L+Q LRE + GV +Y
Sbjct: 289 KYSDFKQQTRSRTLIDFVGDSATIYQVISEL------LYQERLRESVRLLGVSLSHFNY 341
>gi|432872403|ref|XP_004072098.1| PREDICTED: DNA polymerase iota-like [Oryzias latipes]
Length = 680
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 146/325 (44%), Gaps = 38/325 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V M +AKE CP++ LV RG+ DL+ YR A +V +L+ ER DE
Sbjct: 88 VTKLMSVTDAKEKCPELVLV-----RGE-DLTLYREASHQVTELLSSFCPLVERLGFDEN 141
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++D+T+ E + ETPP + + H+ N S A + +DH
Sbjct: 142 FMDVTEMVERRMKETPPP-----EGYSFSGHVY-------NPSNAEI------SGSDH-- 181
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LA G I ELR V T AG+A NK+LAKL SG KP QQT + V ++
Sbjct: 182 PRLALGSYIAAELRDAVHSRLGLTGCAGVATNKLLAKLVSGTFKPNQQTVLLPEDVGHIM 241
Query: 181 DSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+SL ++K+ +G + L ++LGV +V DL L + +G L N++ G+
Sbjct: 242 ESLGGVRKVPGVGHQTAKKL-HQLGVVSVKDLQLLPLPDLVKEFGGAVARRLRNLSLGVD 300
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S SF + + + A V + QL L ER+ D Q + T+
Sbjct: 301 DSPVTPSGAPQSLSDEDSF---KKMSSEAEVVEKIQQLLSRLVERMQKDGRQPQTFRLTI 357
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL 324
+ K +SR+ CP+
Sbjct: 358 RRYTPTNKWFSRESRQ------CPI 376
>gi|403162637|ref|XP_003322823.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173018|gb|EFP78404.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 366
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 28 GKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLT---DAAEAMLAETPPESLDEV 83
K L YR +++ I + E+ASIDE +LD + ++E L + P
Sbjct: 44 AKVSLDPYRRESVKILKIFSEICPTIEKASIDEAFLDFSIPDSSSEISLDDPLPNPPPLD 103
Query: 84 DEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEF 143
E+ L+S L D + T D L G ++ R QV +
Sbjct: 104 LEDLLRSSQSNLVPLDADSDYPT---------NTCTDIALLIGTELMARCRQQVFDRLGY 154
Query: 144 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 203
TCSAGIA NKMLAKL S KP QT + +V+ L + K++ LGGKLG S+ +EL
Sbjct: 155 TCSAGIATNKMLAKLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKLGQSV-SEL 213
Query: 204 GVTTVGDLLKFSE------DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 257
+T L + S+ +LQ S G TG W+W ++ EV+ + L KS S K+
Sbjct: 214 VDSTCDKLCQLSKVWKVPLSQLQASLGEQTGMWVWESVHDVNRSEVETKTLVKSMMSSKN 273
Query: 258 F 258
Sbjct: 274 L 274
>gi|344245022|gb|EGW01126.1| DNA polymerase iota [Cricetulus griseus]
Length = 670
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 36 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPVVERLGFDENFVDL 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DE+ + HI +S + ++ L
Sbjct: 90 TEMVEKRLQQLP---RDEILSVTVSGHIYNNQSVNLHNITHV---------------RLV 131
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 132 VGSQIAAEIREAMYHQLQLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQDLIHSLN 191
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 192 HIKEMPGIGYKTAKRLE-VLGINSVRDLQTFSVKTLEKELGISVAQRIQKLSFGEDNSPV 250
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + A + + +L L +R+C D R HT+ L
Sbjct: 251 TPSGPPQSFSEEDTF---KKCSSEAEAKTKIEELLSSLLKRVCHD----GRKPHTIRLVI 303
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ + S+ CP+
Sbjct: 304 RRYSEKHCNRE----SRQCPI 320
>gi|354499580|ref|XP_003511886.1| PREDICTED: DNA polymerase iota [Cricetulus griseus]
Length = 708
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 74 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPVVERLGFDENFVDL 127
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DE+ + HI +S + ++ L
Sbjct: 128 TEMVEKRLQQLP---RDEILSVTVSGHIYNNQSVNLHNITHV---------------RLV 169
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 170 VGSQIAAEIREAMYHQLQLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQDLIHSLN 229
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 230 HIKEMPGIGYKTAKRLE-VLGINSVRDLQTFSVKTLEKELGISVAQRIQKLSFGEDNSPV 288
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + A + + +L L +R+C D R HT+ L
Sbjct: 289 TPSGPPQSFSEEDTF---KKCSSEAEAKTKIEELLSSLLKRVCHD----GRKPHTIRLVI 341
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ + S+ CP+
Sbjct: 342 RRYSEKHCNRE----SRQCPI 358
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I ++ V + T TCSAG+++NK LAK+ASGMNKP T + +++V+ +LD+LPI +
Sbjct: 122 IAASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHYNNVQQILDALPIGEF 181
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK+ ++L + T DL + SE +L E +G G+ L+N ARGI + ++
Sbjct: 182 PGV-GKVTEQKMHKLKIATGKDLRQLSEIELIEQFG-KKGSSLYNKARGIGTDIIEVERE 239
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G +F + + + ++ ++ E +E++ + L+ ++A T+T+ K+
Sbjct: 240 RKSIGKETTFAHDK------NDESYILRVMNEQTEKVAAKLQSMNKVADTITV---KIKT 290
Query: 309 SDSDSRKK 316
SD +S K
Sbjct: 291 SDFESHTK 298
>gi|170098863|ref|XP_001880650.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644175|gb|EDR08425.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 629
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 154/371 (41%), Gaps = 71/371 (19%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 50
+A E CP +++V V + K L YR ++ + L +
Sbjct: 99 DALERCPHLKVVHVATYKEGEKEPGYWDNVDTNTHKVSLDYYRRESVKISKLFKELLVEC 158
Query: 51 RCERASIDEVYLDLTDAAEAML-------AETPPESLDEVD------------------- 84
E+ASIDE + D + +L A PP + D VD
Sbjct: 159 EVEKASIDEAFFDFSKPVREILLQRYPYLATVPPNAPDGVDTPLPPPPPIHWDDLGWVIP 218
Query: 85 ------EEALKSHILGLESKDGNDSKATVKEWLCRCDADH------RDKLLACGVLIVTE 132
E ++ G E+ D + K V+E + D D L+ ++
Sbjct: 219 INPPPPSEQVEEENKGQEN-DIDQEKDKVQEDVSSSWKDEESIPTWHDVALSIAAELMGS 277
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMKQ 190
R QVL++ ++ SAGIA NK LAKL + KP Q + + +++ L + +K++
Sbjct: 278 ARAQVLQKLGYSTSAGIARNKFLAKLTASYKKPNSQAGSILRNAAIPNYLKPIAFRKIRF 337
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LL 248
LGGKLG + E +TV L D +Q +G W++ + RGI EV+ + +L
Sbjct: 338 LGGKLGKAFAQEYDASTVTPL-----DDMQNKFG-EESIWVYEVLRGIDRAEVKDKGSVL 391
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFK 307
KS + K+ P P +K + HW+ L EL+ RL +++ + TL LHA
Sbjct: 392 NKSMLASKNLPKP--IKNASEGHHWIRVLAAELALRLNDARKESPNLWPKTLVLHARKGY 449
Query: 308 SSDSDSRKKFP 318
+ + FP
Sbjct: 450 EAGRSKQAPFP 460
>gi|149064585|gb|EDM14788.1| polymerase (DNA directed), iota (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 669
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 36 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DEV + H+ +S + + S LA
Sbjct: 90 TEMVEKRLQQLPS---DEVPSVTMSGHVYNNQSVNLHSSTHV---------------RLA 131
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 132 VGSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 191
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+ +V DL F L++ G + + ++ G V
Sbjct: 192 HIKEMPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPV 250
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 251 TPSGPPQSFSEEDTF---KKCSSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRLVI 303
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 304 RRY----SDKHCNRESRQCPI 320
>gi|322783253|gb|EFZ10839.1| hypothetical protein SINV_80489 [Solenopsis invicta]
Length = 577
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 132/292 (45%), Gaps = 35/292 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA +CP++ LV DL++YRN +++ IL + ER D+ +LD+
Sbjct: 65 MSVQEALRLCPELALV------NGEDLTNYRNYSTKITEILHQFTPLVERLGFDDNFLDV 118
Query: 65 TDAAEAMLAETPPESLD----EVDEEALK--SHILG-LESKDGNDSKATVKEWLCRCDAD 117
T E L LD ++ E LK S I G LE + C C
Sbjct: 119 TSIVEKQLKSQNDTELDMSNSSIEFEDLKEVSKIFGPLEEE-------------CPCGCH 165
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
R L G I E+R ++ +E TCSAGIAHNK+LAKLA +NKP QQT + S
Sbjct: 166 TR---LMIGSKIAAEIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLIFPCSGP 222
Query: 178 GLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
LL ++ + K+ +G K T L + TV DL + + L+ G + L + A
Sbjct: 223 MLLSTIGSVSKIPGVGQK-TTELLLSNNIRTVDDLRRLPLENLELKIGVDLARRLKDNAE 281
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
GI V+ +S G F +++ VA V+ L L L+E D
Sbjct: 282 GIDDTVVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 330
>gi|157821829|ref|NP_001099607.1| DNA polymerase iota [Rattus norvegicus]
gi|149064586|gb|EDM14789.1| polymerase (DNA directed), iota (predicted), isoform CRA_c [Rattus
norvegicus]
Length = 732
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 99 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 152
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P DEV + H+ +S + + S LA
Sbjct: 153 TEMVEKRLQQLPS---DEVPSVTMSGHVYNNQSVNLHSSTHV---------------RLA 194
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 195 VGSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 254
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+ +V DL F L++ G + + ++ G V
Sbjct: 255 HIKEMPGIGYKTAKRLE-VLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPV 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 314 TPSGPPQSFSEEDTF---KKCSSEVEAKTKIEELLSSLLNRVCHD----GRKPHTIRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 367 RRY----SDKHCNRESRQCPI 383
>gi|351700533|gb|EHB03452.1| DNA polymerase iota [Heterocephalus glaber]
Length = 696
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 168/398 (42%), Gaps = 51/398 (12%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M+ +AKE CPQ+ LV DL+ YR +V +L ER DE
Sbjct: 75 VKKCMKVKDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLGEFTPLVERLGFDEN 128
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++DLT E L + DE+ + H+ +S D +D+
Sbjct: 129 FVDLTQMVEKRLQQLQS---DELAAVTVSGHLYNNQSVDLHDTMHV-------------- 171
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L G I E+R + + T AGIA NK+LAKL SG+ KP QQT + S + L+
Sbjct: 172 -RLLIGSQIAAEMRKAMYNQLGLTGCAGIASNKLLAKLVSGVFKPNQQTVLLPESCQDLI 230
Query: 181 DSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+L +K++ +G K L+ LG+ +V DL FS L++ +G + + ++ G
Sbjct: 231 LALNHVKEIPGIGYKTAKCLE-ALGIHSVHDLQTFSSKILEKEFGISLAQHIQKLSFGED 289
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S +SF + + + + +L L R+C Q+ R HT+
Sbjct: 290 NSSVIPSGQPQSFSEEESF---KKCSSEVEAKKKIEELLSILLNRVC----QDGRKPHTV 342
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVK 353
L A SS SR+ S+ CP+ + GT T +L ++ F VK
Sbjct: 343 RL-AIRRSSSKYYSRE---SRQCPIPCHIIQKLGTGNCDVMT-SLVNILMKLFRNMVNVK 397
Query: 354 TQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + ++ M Y+ P
Sbjct: 398 MP------FHLTLLSVCFCNLKALIRAKKGPMDYYLTP 429
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 133/301 (44%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 60
V S+M G AK +CP EL+ VP YR ++ +I L E S+DE
Sbjct: 58 VRSAMSGVLAKRLCP--ELIFVP-----PRFDRYREISMKIRAIFLEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S
Sbjct: 111 YLDVT------------------------------ENKKGNPS----------------- 123
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI +++R ++ ++T CSAGI+ NK +AK+AS NKP Q TV V L
Sbjct: 124 -----ATLIASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L I+K + GK+ +LG+ T DL K + L E +G +G+ +N+ RGI
Sbjct: 179 EALDIRKFYGV-GKVTAQKMYQLGIFTGLDLKKKPIEFLNEHFG-KSGSLYYNVVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ +PKS G+ ++F + ++S L +L E LS L L +NK T+T
Sbjct: 237 SPVKPDRVPKSVGAERTFT-----ENLSSEVFMLERL-EHLSVELEQRLRKNKVAGKTIT 290
Query: 301 L 301
L
Sbjct: 291 L 291
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 194 MSIRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFCPVVERLGFDENFVDI 247
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E + + P V ++ H+ ++ + ND L
Sbjct: 248 TEMVEKRMQQLPSNDCSTV---SVVGHVYNNQTVNPNDILHV---------------RLL 289
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + T AG+A NK+L+KL SG KP QQT + S + L+ SL
Sbjct: 290 IGSQIAAEMREAIHSRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLISSLD 349
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L++ LGV++V DL FS D L++ G + + ++ G V
Sbjct: 350 HIKQMPGIGFKTTKRLES-LGVSSVHDLQTFSPDILEKELGISVAQRIQKLSFGEDNSPV 408
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S S R T + + +L L ER+ D R HT+ L
Sbjct: 409 TPSGPPQSFSEEDSI---RKCSTEVDAKKKIEELLTNLLERVYKD----GRKPHTIRLTI 461
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
F + S +R+ S+ CP+
Sbjct: 462 RRFSAEKSFNRE---SRQCPI 479
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 141/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 67 MTVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDI 120
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + + L + + H+ +S + ND HR L+
Sbjct: 121 TEMVEKRLQQLQSDDLSAL---PVSGHVYNDQSVNLND-------------VLHRRLLV- 163
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G + E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 164 -GSQMAAEMREAMCDRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLK 222
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IKKM +G K L+ LGV++V DL FS L++ G + + ++ G V
Sbjct: 223 HIKKMPGIGYKTARRLE-ALGVSSVQDLQTFSSKVLEKELGISVAQRIQKLSFGEDNSPV 281
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
LP+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 282 TPSGLPQSFSEEDSF---KKCSSEVEAKSKIEELLASLLNRVC----QDGRKPHTVRLTI 334
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
S R+ S+ CP+
Sbjct: 335 RRCSSERHCGRE---SRQCPV 352
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 140/322 (43%), Gaps = 39/322 (12%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
EA +CP++ LV DL+ Y+ + I+ R E+ +DE YLD+T
Sbjct: 141 EALAICPELVLV------NGEDLTKYKAMSQRINEIMHRFTPHVEKLGLDENYLDVT--- 191
Query: 69 EAMLAETPPESLDEVDEEALKSH-------ILGL---ESKDGNDSKATVKEWL---CRCD 115
E E L+++D E+ S+ ++GL +D S+ + +E C C
Sbjct: 192 -----ELTAERLEQLDGESSISNANVQTERVVGLIHPPPEDRQRSEYSDRELFRSCCLCG 246
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSS 175
D R L I E+R + +E C AGIAHNK+LAKL MNKP +QT + ++
Sbjct: 247 CDRR---LILATHIAQEIRECIFRELGLRCCAGIAHNKLLAKLVGAMNKPNKQTVLLPTA 303
Query: 176 VKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+ SL ++ + +G K +L VTTV DL + ++L G L I
Sbjct: 304 SSSFVASLGCVRSLTGIGEKTAQTLAECCNVTTVTDLQQIELERLARHVGHEQAVRLKQI 363
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
A G V+ PKS G S P SV+ + L RL ++ ++ R
Sbjct: 364 ALGRDDTPVRQTGKPKSVGLEDSCPA-------ISVRADAEEKFRHLLVRLVKNIAEDGR 416
Query: 295 IAHTLTLHASAFKSSDSDSRKK 316
+ + + F S+ + ++
Sbjct: 417 VPIAIKVTVRKFDSTKRTTHRE 438
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 101 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDV 154
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T E L + + V + H+ +S + ND L
Sbjct: 155 TQTVEKRLQQLQSDDYSGV---VVSGHVYNNQSVNLNDILHV---------------RLL 196
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + + T AG+A NK+L+KL SG KP QQT + S + L+DSL
Sbjct: 197 IGSQIAEEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIDSLD 256
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L++ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 257 HIKQMPGIGFKTTKRLES-LGINSVHDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 315
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + + + +L L R+C+D R HT+ L
Sbjct: 316 TPSGPPQSFSEEDSF---KKCSSEVEAKKKIEELLASLLNRVCND----GRKPHTIRLII 368
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
F S +R+ S+ CP+
Sbjct: 369 RRFSSDRHFNRE---SRQCPI 386
>gi|410923585|ref|XP_003975262.1| PREDICTED: DNA polymerase iota-like [Takifugu rubripes]
Length = 710
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 146/318 (45%), Gaps = 37/318 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V M AKE CPQ+ LV +G+ DL+ YR +V +L ER DE
Sbjct: 94 VTKLMSVVNAKEKCPQLVLV-----KGE-DLTHYREMSYKVTDLLMSYCPLVERLGFDEN 147
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++D+T E LAET + D + K H+ G S A VK +DH
Sbjct: 148 FMDITGMIEKRLAET-----SDCDF-SFKGHVYGHVS-------AGVKA------SDH-- 186
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV---PFSSVK 177
LA G I ELR + + T AGIA NK+LAKL SG KP QQT++ +
Sbjct: 187 PRLALGSHIAAELREAIQCKLGLTGCAGIATNKLLAKLVSGTFKPNQQTSLLPENIGDIV 246
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
G L+SL +K+ +G + LQ LG+ TV DL F + L + +G T L ++ G
Sbjct: 247 GCLNSL--RKVPGVGHQTAKKLQ-ALGLATVKDLQHFPVNNLVKEFGGPTAQRLKSLVLG 303
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
+ V P+S SF + + ++ V + +L L +R+ D Q + +
Sbjct: 304 VDDSPVTPTGAPQSLSDEDSF---KKMSSMKEVLEKIQELLRSLVDRMQKDGRQPQTLRL 360
Query: 298 TLTLHASAFKSSDSDSRK 315
T+ + + K + +SR+
Sbjct: 361 TIRRYTATNKWFNRESRQ 378
>gi|281351226|gb|EFB26810.1| hypothetical protein PANDA_002636 [Ailuropoda melanoleuca]
Length = 701
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 142/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 65 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 118
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +++ D H L
Sbjct: 119 TEMVEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDIVHIR--LL 160
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ SL
Sbjct: 161 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQSLS 220
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+++M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 221 HVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 279
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 280 TPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRLVI 332
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S + SR+ S+ CP+
Sbjct: 333 RRYSSENHCSRE---SRQCPI 350
>gi|301757741|ref|XP_002914721.1| PREDICTED: DNA polymerase iota-like [Ailuropoda melanoleuca]
Length = 770
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 134 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 187
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +++ D H L+
Sbjct: 188 TEMVEKRLQQL---QSDELSALTVSGHVYN-------------NQYINLHDIVHIRLLV- 230
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + + + L+ SL
Sbjct: 231 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPETSQVLIQSLS 289
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+++M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 290 HVREMPGIGYKTAKRLE-ALGISSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 348
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 349 TPSGPPQSFSEEDSF---KKCSSEVEAKNKVEELLASLLNRVC----QDGRKPHTIRLVI 401
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S + SR+ S+ CP+
Sbjct: 402 RRYSSENHCSRE---SRQCPI 419
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G KE+CP + V V ++ Y +E+ ++ A E S+DE
Sbjct: 131 VRAAMPGFIGKELCPDLHFVPV-------NMKKYAGVAAEIRAVFAEYDPDFEAFSLDEA 183
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
LDLTD + +++DE+ ESK+ + +EW A
Sbjct: 184 CLDLTDYIAENWQKYISDAMDEI------------ESKESDK-----EEW-----ASTAS 221
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKG 178
A ++V ELR +V T+ T SAGIA N MLAK+ S MNKP Q +PFS V
Sbjct: 222 GRAAIAAVVVRELRKKVFDCTQLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMT 281
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
+ LP++K+ +G + +L L V T GDL K+ + T WL + G+
Sbjct: 282 FIRELPVRKIGGIGKVMEKTLNEALDVQTGGDLFD-QRGKIAHLFSGKTAMWLLQTSLGV 340
>gi|79529581|ref|NP_199288.4| DNA repair protein REV1 [Arabidopsis thaliana]
gi|59796995|dbj|BAD89586.1| deoxycytidyl transferase [Arabidopsis thaliana]
gi|332007773|gb|AED95156.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1101
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 150/369 (40%), Gaps = 71/369 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V + M AK++CPQ LV VP + +Y + IL R R +A S DE
Sbjct: 426 VKAGMFVRHAKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEA 478
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++D L +V+ E L S I
Sbjct: 479 FLDVSD-------------LSDVETEVLASTI---------------------------- 497
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ L
Sbjct: 498 -------------RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G L L + + T G L S+D LQ+ +G TG LW+ +RG+
Sbjct: 545 DQLPVGTLPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDL 603
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V A KS G+ ++ G R + VQH+L LC+E+S R L+ + I T T
Sbjct: 604 RSVTAVQESKSIGAEVNW-GVR-FRDQQDVQHFLQCLCKEVSLR----LQGCEMIGRTFT 657
Query: 301 LHASAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 358
L K + K C R T D + Q ++ GSF + +
Sbjct: 658 LKIKKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVR 717
Query: 359 YSGWRITAL 367
G +++ L
Sbjct: 718 GVGLQVSKL 726
>gi|440902693|gb|ELR53451.1| DNA polymerase iota, partial [Bos grunniens mutus]
Length = 694
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 61 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 114
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ N+ ++ L +LL
Sbjct: 115 TEMVEKRLEQL---QSDELSALTVSGHVY-------NNQPVNPRDML-------HIRLLV 157
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 158 -GSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIHSLN 216
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+++V DL F L++ G + + ++ G V
Sbjct: 217 HIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKILEKELGISVAQRIQKLSFGEDDSPV 275
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 276 TPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIRLII 328
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S +R+ S+ CP+
Sbjct: 329 RRYSSEKHYNRE---SRQCPI 346
>gi|67010005|ref|NP_001019863.1| DNA polymerase iota [Bos taurus]
gi|66393909|gb|AAY46031.1| DNA polymerase iota [Bos taurus]
Length = 747
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 114 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 167
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ + + D+ L
Sbjct: 168 TEMVEKRLEQL---QSDELSALTVSGHVYNNQPVNPRDTLHI---------------RLL 209
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 210 VGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIHSLN 269
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+++V DL F L++ G + + ++ G V
Sbjct: 270 HIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDDSPV 328
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 329 TPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIRLII 381
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S +R+ S+ CP+
Sbjct: 382 RRYSSEKHYNRE---SRQCPI 399
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 144/344 (41%), Gaps = 62/344 (18%)
Query: 11 AKEVCPQIELVQVPV-----------------ARGKADLSSYRNAGSEVVSILARKGRC- 52
A+E CP + L V A K L YR +++ I+ K C
Sbjct: 98 AREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKII--KQHCD 155
Query: 53 --ERASIDEVYLDL-TDAAEAMLAETP----------------PESL--------DEVDE 85
E+AS+DE Y+DL + + +L E P PESL E ++
Sbjct: 156 VVEKASVDECYMDLGREVHKRLLLEFPQLRQLGSKLPDIPPQLPESLYWQGETVRTEAED 215
Query: 86 EALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 145
L+S S+ S T+ +W C + G ++ ++R + E +T
Sbjct: 216 AELQSRENVSSSQKPPASPPTISDWDDIC--------VLIGAQVLYKIRKLIYDELSYTT 267
Query: 146 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-- 203
S GIA NK LAKLA+G NKP QT + +S+ L + + +GGK G ++
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRSASIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 204 --GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
GV + L + ++ +Q+ Y + +++I RG + ++ R KS S K+F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 259 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
R +KT+ + WL +L R ++N ++ + H
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLSMSSVSH 431
>gi|62955641|ref|NP_001017834.1| DNA polymerase iota [Danio rerio]
gi|62202162|gb|AAH92781.1| Zgc:110185 [Danio rerio]
gi|182890874|gb|AAI65649.1| Zgc:110185 protein [Danio rerio]
Length = 710
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 40/321 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 64
M +A E CPQ+ LV +G+ DL+ YR +V +L ER DE ++D+
Sbjct: 88 MSVTDAVEKCPQLVLV-----KGE-DLTHYREMSYKVTELLMSYCPLVERLGFDENFMDV 141
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E + ET + + + H+ ES D + LA
Sbjct: 142 TEMVEKRIKET------RISDLSFNGHVYNHES----------------VVVDEENIRLA 179
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G +I E+R + T AG+A NK+LAKL SG KP QQTT+ S L+ SL
Sbjct: 180 VGSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAELMSSLT 239
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+ K+ +G K L+ LG+ V DL + L + +G + N+A GI V
Sbjct: 240 GLIKVPGIGYKTREKLK-ALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGIDDSPV 298
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + T+ V + +L L+ER+ D R HTL L
Sbjct: 299 TPAGPPQSLSDEDSF---KKMSTLEEVLKKIEELLINLTERMHKD----GRQPHTLRLTI 351
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ ++ ++ S+ CP+
Sbjct: 352 RKYTVTNRWFNRE--SRQCPI 370
>gi|296473688|tpg|DAA15803.1| TPA: DNA polymerase iota [Bos taurus]
Length = 747
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 114 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 167
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ + + D+ L
Sbjct: 168 TEMVEKRLEQL---QSDELSALTVSGHVYNNQPVNPRDTLHI---------------RLL 209
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G IV E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 210 VGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIHSLN 269
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+++V DL F L++ G + + ++ G V
Sbjct: 270 HIKEMPGIGYKTTKRLE-ALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDDSPV 328
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + + + +L L R+C Q+ R HT+ L
Sbjct: 329 TPSGPPQSFSEEDSF---KKCSSEVEAKTKIEELLASLLNRVC----QDGRKPHTIRLII 381
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S +R+ S+ CP+
Sbjct: 382 RRYSSEKHYNRE---SRQCPI 399
>gi|348535636|ref|XP_003455305.1| PREDICTED: DNA polymerase iota-like [Oreochromis niloticus]
Length = 716
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 140/323 (43%), Gaps = 42/323 (13%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL 64
M +AKE CP++ LV+ DL+ YR ++ +L ER DE ++D+
Sbjct: 95 MSVTDAKEKCPELVLVK------GEDLTHYREMSYKMTELLMSYCPLVERLGFDENFMDV 148
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E LA+T + ++ + K H+ S D S LA
Sbjct: 149 TEMVEQRLAQT-----VKSEDFSFKGHVYNHPSADVKASNY---------------PRLA 188
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV---PFSSVKGLLD 181
G I ELR V + T AGIA NK+LAKL SG KP QQTT+ S + G L
Sbjct: 189 LGSHIAGELREAVHSKLGLTGCAGIATNKLLAKLVSGTFKPNQQTTLLPENISDIMGCLG 248
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
S ++K+ +G + LQ LG+ +V DL + L + +G T L N+A G+
Sbjct: 249 S--VRKVPGVGHQTAKRLQ-ALGLVSVKDLQLCPLNDLVKEFGSPTAQRLKNLALGVDDS 305
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P+S SF + + + V QL L ER+ D Q + T+
Sbjct: 306 PVTCTGAPQSLSDEDSF---KKMSSTKEVSEKTQQLLSSLVERMHKDGRQPQTFRLTIRK 362
Query: 302 HASAFKSSDSDSRKKFPSKSCPL 324
+ + K +SR+ CP+
Sbjct: 363 YTTTNKWFSRESRQ------CPI 379
>gi|449542568|gb|EMD33547.1| hypothetical protein CERSUDRAFT_57122 [Ceriporiopsis subvermispora
B]
Length = 628
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 142/365 (38%), Gaps = 70/365 (19%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSIL---ARKG 50
EAK CP++ +V V + K L YR +++ +
Sbjct: 92 EAKRKCPELVVVHVATYKEGEKEPGYWENPDTHTHKVSLDHYRRESMKIIQMFKDGMPTA 151
Query: 51 RCERASIDEVYLDLTDAAE-------AMLAETPPESLDEVDEEAL---------KSHILG 94
E+ASIDE ++D T LA+ P ++ D + ++
Sbjct: 152 EIEKASIDEAFIDFTRPVREEILKRYPYLAKVPADAPQGADSPLPPPPPICWDNRGTVIP 211
Query: 95 LESKDGNDSKATVKEWLCRCDADH------------RDKLLACGVLIVTELRMQVLKETE 142
L + +D + + DH D L+ + +R ++ +
Sbjct: 212 LSPAEVHDPQDSTTVQPNTTPDDHDGVSEDDTSTTWHDVALSIAAEYMMTIRHEIYTKLG 271
Query: 143 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 202
++ SAGIA NK LAKL + KP Q+ + +++ L +P +K++ LGGKLG +L E
Sbjct: 272 YSLSAGIARNKFLAKLTASYKKPNNQSILRDAAIPNYLRPMPFQKIRFLGGKLGKALAQE 331
Query: 203 LGVTTVGDLL----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
V+TVGDLL KF ED + W++ I R +S QA K KS
Sbjct: 332 YDVSTVGDLLSMQRKFGEDSI----------WVYEILRYVS----QAYATCKKSAVNKSM 377
Query: 259 PGPRALKTVASV----QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 313
+ L + HW+ L EL+ RL E + T+ LH S
Sbjct: 378 LASKNLLNPVTKPSQGHHWIRVLAAELALRLNEARENIPTLWPKTIVLHVRQGYDSFRSK 437
Query: 314 RKKFP 318
+ FP
Sbjct: 438 QAAFP 442
>gi|432098568|gb|ELK28275.1| DNA polymerase iota [Myotis davidii]
Length = 663
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 141/322 (43%), Gaps = 50/322 (15%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 36 MNVRDAKEKCPQLVLV------NGEDLTRYREISYKVTELLEEFSPVVERLGFDENFVDL 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
++ E L + P + L + A+ H D H KLL
Sbjct: 90 SEMVEKRLQQLPSDDLSALTVSAINLH-----------------------DVLHI-KLLV 125
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 126 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESSQDLIHSLK 184
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK+M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 185 HIKEMPGIGYKTAKRLE-ALGISSVHDLQTFSSKILEKELGISIAQRIQKLSFGEDNSPV 243
Query: 244 QARLLPKSHGSGKSFPGPRALKTVAS---VQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
G +SF +LK +S + + +L L +R+C Q+ R HT+
Sbjct: 244 TPS------GPPQSFSEEDSLKKCSSEVEAKSKIQELLASLLKRVC----QDGRKPHTIR 293
Query: 301 LHASAFKSSDSDSRKKFPSKSC 322
L + S SR+ S+ C
Sbjct: 294 LIIRRYSSEKHCSRE---SRQC 312
>gi|58268086|ref|XP_571199.1| eta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57227433|gb|AAW43892.1| eta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 690
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 132/315 (41%), Gaps = 53/315 (16%)
Query: 9 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK--- 49
++AK++CP + + V R K L YR ++++I K
Sbjct: 89 EDAKKMCPHLRIQHVATYRNGESEAGYWDDVDPRTHKVSLDVYRRESLKILAIFKEKIPR 148
Query: 50 GRCERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH----------- 91
G E+ASIDE +LDLT AA L++ P ++ + +D
Sbjct: 149 GEIEKASIDEAFLDLTPMVIERLLAAHPYLSKVPEDAPNGLDSPLPPPPPIDWSNAGSVF 208
Query: 92 -ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
I G E G D + +E D D D T + E C G
Sbjct: 209 PIDGKEDGSGTDHQEDKEEDERSEDGDEFDGR--------TSGSNRDSWEDWALCMGG-- 258
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
++++ L S KP QT + ++V L+ ++ LGGKLG ++ + G TVGD
Sbjct: 259 --ELMSNLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQQFGAKTVGD 316
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+L S D++Q +G W++NI RGI EV R+ KS + KS A+ +
Sbjct: 317 MLTVSLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKSIRP--AVTSPQQG 373
Query: 271 QHWLNQLCEELSERL 285
WL+ L EL+ RL
Sbjct: 374 HQWLSILAGELNVRL 388
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 132/303 (43%), Gaps = 38/303 (12%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE----S 79
+ + K L YR +++ ++ + E+AS+DE Y+DL L + P+ S
Sbjct: 134 INKHKVSLDPYRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDLFPQLSRGS 193
Query: 80 LDEVDEEAL---------------KSHILGLESKDGND----SKATVKEWLCRCDADHRD 120
D + + I+ E + D S +++W C
Sbjct: 194 RDNPENSYANLPLIPPALPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDIC------ 247
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
G I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++ L
Sbjct: 248 --FIIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFL 305
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWNIA 235
+ + + +GGKLG S+ N++ V + + FS+ ++E G G ++NI
Sbjct: 306 TNFELTDVTGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIV 365
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI+ E+Q+ + KS S K+F + + WL +L RL +N +
Sbjct: 366 RGINAIELQSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDNENMEL 424
Query: 296 AHT 298
+ T
Sbjct: 425 SST 427
>gi|170067256|ref|XP_001868410.1| DNA polymerase IV [Culex quinquefasciatus]
gi|167863443|gb|EDS26826.1| DNA polymerase IV [Culex quinquefasciatus]
Length = 647
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 25/310 (8%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
EA+++CP++ LV D+S Y+ + + I+ + G E+ +DE YLD+T
Sbjct: 76 EARKLCPELVLVD------GEDISKYKQMSARINEIMHKFSGNVEKLGLDENYLDVTKEI 129
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESK--DGNDSKATVKEWLCRCDADHRDKLLACG 126
E L++ E L + G +G S+ C C D R L G
Sbjct: 130 S--------EQLEQGVEAGLLDRVEGYVYPPLEGGCSEREAFRRACGCGCDRR---LILG 178
Query: 127 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PI 185
+ E+R + +E C AG+AHNK+LAKL +NK +QT + + L SL +
Sbjct: 179 THMAKEIRDCIARELGLKCCAGVAHNKLLAKLVGSVNKQNKQTVLLPNCGSSFLASLGSV 238
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K + +G K L+ E+GV TV DL + S +KL + G L IA G V+A
Sbjct: 239 KALTGIGEKTAEILE-EVGVKTVRDLQETSVEKLAKRLGLEQAGRLKEIAFGKDDTPVKA 297
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA 305
PKS G S P A+ A + L L + + D I T+ H S
Sbjct: 298 TGKPKSVGLEDSCP---AISIRADAEDKFRHLIVRLVKNIAEDGRIPIAIKVTIRKHDSV 354
Query: 306 FKSSDSDSRK 315
++S + ++
Sbjct: 355 RRTSHRECKQ 364
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 38/303 (12%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDL------------------- 64
+ + K L YR +++ ++ + E+AS+DE Y+DL
Sbjct: 134 INKHKVSLDPYRRESRKILRVIGKSFDLTEKASVDECYIDLGREIYKRLIDLFPQLSRGS 193
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND----SKATVKEWLCRCDADHRD 120
D E A P + I+ E + D S +++W C
Sbjct: 194 RDNPENSYANLPLIPPTLPLNLKWEGEIINTEKEKSEDNDIVSPPVIEDWDDIC------ 247
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
G I+ E+R + +E +T SAG+A K +AKLA+G KP QT + S++ L
Sbjct: 248 --FIIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFL 305
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWNIA 235
+ + + +GGKLG S+ N++ V + + FS+ ++E G G ++NI
Sbjct: 306 TNFELTDVTGMGGKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIV 365
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
RGI+ E+Q+ + KS S K+F + + WL +L RL +N +
Sbjct: 366 RGINAIELQSTIEVKSMTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDSENMEL 424
Query: 296 AHT 298
+ T
Sbjct: 425 SST 427
>gi|320163305|gb|EFW40204.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 147/329 (44%), Gaps = 46/329 (13%)
Query: 16 PQIELVQVPV-ARGKADLSSYR--------NAGSEVVSILARKGRCERASIDEVYLDLTD 66
P++ +V VP+ GKA YR S ++ + E ASIDE YLDLT
Sbjct: 69 PEVTIVHVPLRGLGKATYRDYRLLSICVFDVVRSFATAVPSAPVTVEVASIDEGYLDLTA 128
Query: 67 AAEAMLAETPPESLDEVDEEALKSHILGLES-KDGNDSKATVKEWLCRCDADHRDKLLAC 125
A+ ++ +T + +EA +L + DG V + LL
Sbjct: 129 RAKHLMVQT-------IAQEASNERLLHRQRYDDGEQVHGGV------LPSGGPSNLLEA 175
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
G +++ ELR +L CSAGIAHNK+LAKLA+ + KP Q V S+ LL
Sbjct: 176 GAVLIAELRAAILSVLSLECSAGIAHNKLLAKLATRLAKPNGQVVVVNSNPLLLLQE--- 232
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT--WLWNIARGISGEEV 243
+ GGK+ +L+ +G+ T GD+L+ L +G ++ T L RG EV
Sbjct: 233 AGIPSFGGKVTDTLKT-VGIETGGDVLRAPPSFLASLFGASSPTPASLLRACRGEDDSEV 291
Query: 244 QARLLPKSHGSGKSFP---------GPRA----LKTVASVQHWLNQLCEELSERLCSDLE 290
R L KS S + GP A + + ++ +L E+L+ER D
Sbjct: 292 VDRGLIKSISSQMALTAWARPRFGGGPTATIEPVGVSEDISLFIRELAEDLAERTLEDQI 351
Query: 291 QNKRIAHTLTLHASAFKSSDSDSRKK-FP 318
+ R TLT+ A++ D+ SR + FP
Sbjct: 352 VHSRHPSTLTV---AYRVDDTWSRSRTFP 377
>gi|156041128|ref|XP_001587550.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980]
gi|154695926|gb|EDN95664.1| hypothetical protein SS1G_11543 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 465
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 34/253 (13%)
Query: 9 DEAKEVCPQIELVQVPVAR--------------------GKADLSSYRNAGSEVVSILAR 48
+E + +CP I + V R KA L YR + ++I+ +
Sbjct: 90 EEVRRLCPNIIMQHVATWREGETSWAYRSDAADPAMMKKDKAALDPYRIESRKSINIITK 149
Query: 49 K------GRCERASIDEVYLDLTDAAEAMLAETPPE-SLDEVDEEAL----KSHILGLES 97
R E+AS+DEV++DL+ ++L P+ ++D+ +L + +L E+
Sbjct: 150 HLPPAPLQRIEKASVDEVFIDLSAHVHSVLVSRYPQLAVDDNVHGSLPLPPRDIVLHWET 209
Query: 98 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
+ D + + R D D + L G IV LR ++ + +TCSAGIA NK LAK
Sbjct: 210 DNLVDLPTSTDD-THRIDWD--EIALNIGAQIVRNLRKEIFESLHYTCSAGIAQNKALAK 266
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
L +G KP QQT + +V L + + ++ L G LG + G ++ DLL +
Sbjct: 267 LGAGFKKPDQQTVIRARAVPFFLSTCKMTSIRGLAGVLGVKAKEAFGSNSIPDLLAIPQK 326
Query: 218 KLQESYGFNTGTW 230
++ + F T ++
Sbjct: 327 EIVAALDFRTASY 339
>gi|224007068|ref|XP_002292494.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972136|gb|EED90469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1538
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 28/298 (9%)
Query: 28 GKADLSSYRNAGSEVVSI--------LARKGRC-ERASIDEVYLDLTD-AAEAMLAETPP 77
GKA L YR A S + S+ L +K ERASIDE+++D+T A + +
Sbjct: 209 GKACLDRYRLASSRIFSLIEETLIEKLGKKNFILERASIDELFIDVTAFCYSANVHKNES 268
Query: 78 ESLDEVDEEALKSHILGLESK-----------DGNDSKATVKEWLCRCDADHR-DKLLAC 125
ES D+ D + K + +E++ +D+ + + D D + L
Sbjct: 269 ESKDD-DNDNSKEEVQSVETQFRLQCQEEAVQSLSDTVICHESHIGSTDKDDEIGRALRL 327
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
G + +R V ++ FT SAGI+ +K++AKL + KP Q + ++ ++D I
Sbjct: 328 GCHVSANVRRVVFQKLGFTLSAGISTSKLVAKLGATYGKPNGQAVIYPVAIPKVMDETQI 387
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+K + LGGKLG + + + + + + + + G +G W+++ RGI EEV+
Sbjct: 388 RKARMLGGKLGKKV-GSMNIDADDVIRSYIDKSISFAVGDESGRWVFDACRGICLEEVKP 446
Query: 246 RL--LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
L LPKS + KS G + + + W+ L ++ +R+ D +N R+ + TL
Sbjct: 447 TLNVLPKSITAFKSLRG--SAGSYPELDKWVALLASDIMKRVQLDTSRNHRVPKSCTL 502
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 133/307 (43%), Gaps = 66/307 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 60
V S+M G +AK+ CP++ V+ R Y+ +++ +I L E S+DE
Sbjct: 58 VRSAMSGYQAKKNCPELIFVRPRFDR-------YKEISTKIRTIFLEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S +
Sbjct: 111 YLDVT------------------------------ENKKGNPSASN-------------- 126
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV V L
Sbjct: 127 --------IAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L I+K + GK+ T LG+ T DL + S + L E++G +G + +N+ RGI
Sbjct: 179 EDLEIRKFYGV-GKVTTQKMYSLGIFTGKDLKEKSVEFLTENFG-KSGAFYYNVVRGIHL 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ +PKS G+ ++F L + + L + EL RL K I TL
Sbjct: 237 SEVKPNRIPKSVGAERTF--SENLSSEVFMLERLESIANELERRLKKSKIAGKTI--TLK 292
Query: 301 LHASAFK 307
+ S FK
Sbjct: 293 IKYSDFK 299
>gi|426253842|ref|XP_004020600.1| PREDICTED: DNA polymerase iota isoform 2 [Ovis aries]
Length = 734
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 100 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 153
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D+ L
Sbjct: 154 TEMVEKRLEQL---QSDELSALTVSGHVYNNQSVNPRDTLHI---------------RLL 195
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 196 VGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLN 255
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 256 HIKEIPGIGYKTAKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDDSPV 314
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF ++ ++ L L R+C Q+ R HT+ L
Sbjct: 315 TPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLL----NRVC----QDGRKPHTVRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S +R+ S+ CP+
Sbjct: 367 RRYSSEKLCNRE---SRQCPI 384
>gi|209863006|ref|NP_001129562.1| DNA polymerase iota isoform 1 [Mus musculus]
gi|51895887|gb|AAH82278.1| Poli protein [Mus musculus]
Length = 674
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 36 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 90 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 131
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 132 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 191
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 192 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 250
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 251 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 303
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 304 RRY----SDKHCNRESRQCPI 320
>gi|323451991|gb|EGB07866.1| hypothetical protein AURANDRAFT_26642 [Aureococcus anophagefferens]
Length = 218
Score = 91.7 bits (226), Expect = 1e-15, Method: Composition-based stats.
Identities = 74/213 (34%), Positives = 103/213 (48%), Gaps = 55/213 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M+ +A++ CP++ VQVP GKA++S Y+ AG V ILA R E+ S+DEV
Sbjct: 58 VKRQMQAGQARKACPRLVTVQVPTEHGKANMSIYKEAGQRVCDILATFADRVEKRSVDEV 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALK--SHILGLESKDGNDSKATVKEWLCRCDADH 118
+D+T AA +L TP D++ EAL+ SH+ AD
Sbjct: 118 AVDVTGAARRLLETTP---FDDILREALQKGSHL-----------------------AD- 150
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
+ + G+A NK LAKL G++KP QQT V V G
Sbjct: 151 -------------------------SAAGGVAPNKQLAKLGCGLHKPNQQTVVLRRHVAG 185
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL 211
LL LP+ ++ LGG+ G L++EL V T GDL
Sbjct: 186 LLRDLPLDRLAGLGGEFGKRLKDELRVETAGDL 218
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 40/305 (13%)
Query: 25 VARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPE----S 79
+ K L YR +++ I+++ E+AS+DE Y+DL L + P+ S
Sbjct: 134 INNHKVSLDPYRRESRKILRIISKSFDLTEKASVDECYIDLGREIYKRLIDLFPQLSRSS 193
Query: 80 LDEVDEEA----LKSHILGLESK---------------DGNDSKA--TVKEWLCRCDADH 118
D + L IL L+ K +GN S +++W
Sbjct: 194 RDNPENGYANLPLIPSILPLDLKWEGEIINSEKEKTMDNGNSSPPPPVIEDW-------- 245
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
D G I+ E+R + E +T SAG+A K +AKLA+G KP QT + S++
Sbjct: 246 DDICFIIGSQILLEVRKDIFAELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINS 305
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWN 233
L + + + +GGKLG S+ N++ V + + FS D ++E G G ++N
Sbjct: 306 FLTNFELTDVTGMGGKLGESIINKINVPPQINSISFIRENFSIDSIKEKLGGELGLKVYN 365
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
I RG + E+Q+ + KS S K+F ++ + WL +L RL +N
Sbjct: 366 ICRGTNAIELQSLIEVKSMTSTKNFTS-FSVNNLFDAYDWLKVFAGDLHNRLIDLDNENI 424
Query: 294 RIAHT 298
++ T
Sbjct: 425 ELSST 429
>gi|148677620|gb|EDL09567.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
gi|148677623|gb|EDL09570.1| polymerase (DNA directed), iota, isoform CRA_a [Mus musculus]
Length = 679
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 41 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 94
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 95 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 136
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 137 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 196
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 197 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 255
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 256 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 308
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 309 RRY----SDKHCNRESRQCPI 325
>gi|186529382|ref|NP_001119373.1| DNA repair protein REV1 [Arabidopsis thaliana]
gi|384950720|sp|A3EWL3.1|REV1_ARATH RecName: Full=DNA repair protein REV1; Short=AtREV1; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|125656400|gb|ABN48548.1| polymerase ATREV1-1105 [Arabidopsis thaliana]
gi|332007774|gb|AED95157.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1105
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 150/373 (40%), Gaps = 75/373 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V + M AK++CPQ LV VP + +Y + IL R R +A S DE
Sbjct: 426 VKAGMFVRHAKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEA 478
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++D L +V+ E L S I
Sbjct: 479 FLDVSD-------------LSDVETEVLASTI---------------------------- 497
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ L
Sbjct: 498 -------------RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G L L + + T G L S+D LQ+ +G TG LW+ +RG+
Sbjct: 545 DQLPVGTLPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDL 603
Query: 241 EEVQARLLPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 296
V A KS G+ G F + + + VQH+L LC+E+S R L+ + I
Sbjct: 604 RSVTAVQESKSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIG 657
Query: 297 HTLTLHASAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 354
T TL K + K C R T D + Q ++ GSF +
Sbjct: 658 RTFTLKIKKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDV 717
Query: 355 QGSHYSGWRITAL 367
+ G +++ L
Sbjct: 718 KEVRGVGLQVSKL 730
>gi|426253840|ref|XP_004020599.1| PREDICTED: DNA polymerase iota isoform 1 [Ovis aries]
Length = 750
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 116 MSVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 169
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D+ L
Sbjct: 170 TEMVEKRLEQL---QSDELSALTVSGHVYNNQSVNPRDTLHI---------------RLL 211
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + ++ T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 212 VGSHIAAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLN 271
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 272 HIKEIPGIGYKTAKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDDSPV 330
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF ++ ++ L L R+C Q+ R HT+ L
Sbjct: 331 TPSGPPQSFSEEDSFRCSSEVEAKTKIEELLASLL----NRVC----QDGRKPHTVRLVI 382
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S +R+ S+ CP+
Sbjct: 383 RRYSSEKLCNRE---SRQCPI 400
>gi|226958460|ref|NP_036102.2| DNA polymerase iota isoform 2 [Mus musculus]
gi|350640293|gb|AEQ34092.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 99 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 152
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 153 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 194
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 195 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 254
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 255 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 314 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 367 RRY----SDKHCNRESRQCPI 383
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 62/344 (18%)
Query: 11 AKEVCPQIELVQVPV-----------------ARGKADLSSYRNAGSEVVSILARKGRC- 52
A+E CP + L V A K L YR +++ I+ K C
Sbjct: 98 AREKCPDVILAHAAVFKKGNPYWSYVDGLPNQAEHKVSLDPYRRESRKIIKII--KQHCD 155
Query: 53 --ERASIDEVYLDL-TDAAEAMLAETP----------------PESL----DEVDEEALK 89
E+AS+DE Y+DL + + +L E P PESL + V EA
Sbjct: 156 VVEKASVDECYMDLGREVHKRLLLEFPQLRQLGLKLPDIPPQLPESLYWQGETVRTEAED 215
Query: 90 SHILGLE----SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTC 145
+ + E S+ S T+ +W C + G ++ ++R + E +T
Sbjct: 216 AELQLRENVSSSQKPPASPPTISDWDDIC--------VLIGAQVLYKIRKLIYDELSYTT 267
Query: 146 SAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-- 203
S GIA NK LAKLA+G NKP QT + + + L + + +GGK G ++
Sbjct: 268 SGGIARNKFLAKLAAGFNKPDNQTIIRLALIPNFLTNFQFNDVSGMGGKTGDTVLARFDT 327
Query: 204 --GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
GV + L + ++ +Q+ Y + +++I RG + ++ R KS S K+F
Sbjct: 328 PPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDVKSMMSRKNF 387
Query: 259 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
R +KT+ + WL +L R ++N + L H
Sbjct: 388 IPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLLMLLVSH 431
>gi|426386012|ref|XP_004059489.1| PREDICTED: DNA polymerase iota [Gorilla gorilla gorilla]
Length = 739
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 144/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 103 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 156
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L
Sbjct: 157 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR--LL 198
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 199 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 258
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 259 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG----ED 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 314 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 370
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 371 RRYSSEKHYGRE---SRQCPI 388
>gi|350640291|gb|AEQ34091.1| DNA polymerase iota [Mus musculus]
gi|350640303|gb|AEQ34097.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 99 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 152
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 153 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 194
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 195 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 254
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 255 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 314 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 367 RRY----SDKHCNRESRQCPI 383
>gi|59798311|sp|Q6R3M4.1|POLI_MOUSE RecName: Full=DNA polymerase iota; AltName: Full=Rad30 homolog B
gi|45738074|gb|AAS75834.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>gi|119583404|gb|EAW63000.1| polymerase (DNA directed) iota, isoform CRA_a [Homo sapiens]
Length = 739
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 103 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 156
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L
Sbjct: 157 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR--LL 198
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 199 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 258
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 259 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 317
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 318 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 370
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 371 RRYSSEKHYGRE---SRQCPI 388
>gi|350640297|gb|AEQ34094.1| DNA polymerase iota [Mus musculus]
gi|350640305|gb|AEQ34098.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 99 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 152
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 153 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 194
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 195 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 254
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 255 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 314 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 367 RRY----SDKHCNRESRQCPI 383
>gi|5739300|gb|AAD50424.1|AF151691_1 DNA polymerase iota [Mus musculus]
Length = 717
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>gi|21619716|gb|AAH32662.1| Polymerase (DNA directed) iota [Homo sapiens]
gi|123979980|gb|ABM81819.1| polymerase (DNA directed) iota [synthetic construct]
gi|124000603|gb|ABM87810.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ N S + R L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR---------LL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 294 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|344269856|ref|XP_003406763.1| PREDICTED: DNA polymerase iota [Loxodonta africana]
Length = 713
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V ++ ER DE ++D+
Sbjct: 84 MSVRDAKEKCPQLVLV------NGEDLTRYRETSYKVTELMEEFSPLVERLGFDENFVDI 137
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + E V + H+ ND + D H L
Sbjct: 138 TELIEKRLQQLQSEEHSSV---TVSGHVY-------NDQSINLH------DISHIR--LL 179
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 180 VGSQIAAEIREAIYNKLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHSLN 239
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 240 HIKEIPGIGYKTSKRLE-ALGISSVRDLQTFSSKILEKELGISVAQRIQKLSFGEDTSPV 298
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + + + +L + L R+C Q+ R HT+ L
Sbjct: 299 TPSGPPQSFSEEDSF---KKCSSEDEAKQKIAELLDSLFNRVC----QDGRKPHTVRLII 351
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S SR+ S+ CP+
Sbjct: 352 RRYSSEKHYSRE---SRQCPV 369
>gi|5739208|gb|AAD50381.1|AF140501_1 DNA polymerase iota [Homo sapiens]
gi|20160209|gb|AAM11872.1| polymerase (DNA directed) iota [Homo sapiens]
Length = 715
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ N S + R L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR---------LL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 294 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|67971498|dbj|BAE02091.1| unnamed protein product [Macaca fascicularis]
Length = 637
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 50/394 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 1 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 54
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 55 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 96
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 97 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 156
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 157 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 211
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 212 NSHVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 268
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 269 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 322
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + V + ++ Y+ P
Sbjct: 323 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 352
>gi|350640295|gb|AEQ34093.1| DNA polymerase iota [Mus musculus]
gi|350640301|gb|AEQ34096.1| DNA polymerase iota [Mus musculus]
Length = 737
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 136/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 99 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 152
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 153 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 194
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 195 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 254
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 255 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 314 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVI 366
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 367 RRY----SDKHCNRESRQCPI 383
>gi|441602786|ref|XP_003267571.2| PREDICTED: DNA polymerase iota isoform 1 [Nomascus leucogenys]
Length = 715
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMHNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSPKILEKELGISVARRIQELSFG----ED 289
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 290 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|45738076|gb|AAS75835.1| DNA polymerase iota [Mus musculus]
Length = 717
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 136/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVI 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>gi|407842286|gb|EKG01044.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 139/321 (43%), Gaps = 45/321 (14%)
Query: 9 DEAKEVCPQIELVQVPV-------------AR---GKADLSSYRNAGSEVVSIL-ARKG- 50
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 107
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI------RLPSAQCSSHLEDVMHPETNVIPDRRAEI 170
Query: 108 KEWLCR---------------CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 152
WL D LL +V +LR ++ +E + CSAGIAHN
Sbjct: 171 DAWLFEKGKEFNEIFDTALHPHDTVEHQLLLGAASRVVWKLREKIYQELCYDCSAGIAHN 230
Query: 153 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGDL 211
K+LAK S +KP QQT + V + P + ++ GGK G S+ G D
Sbjct: 231 KILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVFRACGNAELFRDA 290
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
+KLQ G + GT+ + R E+++ + + K+ + KSF P + + ++
Sbjct: 291 WLVPLEKLQSVLGVDDGTYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGLR 348
Query: 272 HWLNQLCEELSERLCSDLEQN 292
W+ L EL R E N
Sbjct: 349 KWITVLSSELCARYKEFCETN 369
>gi|154350220|ref|NP_009126.2| DNA polymerase iota [Homo sapiens]
gi|327478565|sp|Q9UNA4.3|POLI_HUMAN RecName: Full=DNA polymerase iota; AltName: Full=Eta2; AltName:
Full=RAD30 homolog B
Length = 740
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 104 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 157
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L
Sbjct: 158 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR--LL 199
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 200 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 259
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 260 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 318
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 319 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 371
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 372 RRYSSEKHYGRE---SRQCPI 389
>gi|12052864|emb|CAB66605.1| hypothetical protein [Homo sapiens]
gi|117644780|emb|CAL37856.1| hypothetical protein [synthetic construct]
gi|208965366|dbj|BAG72697.1| polymerase (DNA directed) iota [synthetic construct]
Length = 715
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ N S + R L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR---------LL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 294 ILSGPPQSFSEEDSF---KKCTSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|383415497|gb|AFH30962.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 50/394 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 312
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|355755039|gb|EHH58906.1| DNA polymerase iota [Macaca fascicularis]
Length = 738
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 50/394 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQCIQKLSFG----ED 312
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|7533183|gb|AAF63383.1|AF245438_1 DNA polymerase iota [Homo sapiens]
Length = 715
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ N S + R L
Sbjct: 133 TEMVEKRLQQL---QSDELSAVTVSGHVYN------NQSINLLDVLHIR---------LL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 294 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|74208215|dbj|BAE26322.1| unnamed protein product [Mus musculus]
Length = 717
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 136/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C D R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVCKD----GRKPHTVRLVI 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>gi|384945076|gb|AFI36143.1| DNA polymerase iota [Macaca mulatta]
Length = 737
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 50/394 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 102 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 155
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 156 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 197
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 198 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 257
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 258 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 312
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 313 NSHVIPS--GPPQSFCEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 369
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 370 RRYPSEKHCGRE---SRQCPIPSHIIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 423
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + V + ++ Y+ P
Sbjct: 424 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 453
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D K + +I ++ + +ET T SAG+++NK +AKLAS KP T +
Sbjct: 110 DVTENKKKIKSATIIAKLIKEDIKRETGLTASAGVSYNKFVAKLASDYQKPNGLTVITED 169
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
+V+ LD+LP+KK +G L+N G+ T DL S +KL++ + N G L+N
Sbjct: 170 NVQEFLDTLPVKKFFGVGKVTERVLKNN-GINTGYDLRNTSLEKLEKIFK-NRGLELYNF 227
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
ARGI V + KS G+ + + + +V L++LCEE++ER+ + +
Sbjct: 228 ARGIDNRPVNPTRIRKSIGAETTLIENKNIDDAETVM-ILDELCEEVAERMAKE----DK 282
Query: 295 IAHTLTL 301
+A T+TL
Sbjct: 283 VAKTITL 289
>gi|358348542|ref|XP_003638304.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
gi|355504239|gb|AES85442.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
Length = 201
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 541 PLGDC--LSESNKKQVNIPKERLDNSTGD---CLSESNQNQVNIPKERLAEAATTSTSTD 595
P G+C N Q + ++ + N+ G S NQV IP E + T+
Sbjct: 83 PQGNCSITKFFNNSQSSFEQKNVTNTQGSQSASASYLTSNQVEIPAEGVG------TNNS 136
Query: 596 RCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYF 655
C D + Q S++W I+EIDPS+IDELP EIQDE + WLRP KRP+ VK+G +I YF
Sbjct: 137 GCSVDNMPQGSQAWSYNIDEIDPSIIDELPPEIQDEFRTWLRPRKRPNVVKRGSSITQYF 196
Query: 656 SPSK 659
P +
Sbjct: 197 RPDR 200
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 73/323 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S+M G A +CPQ L+ VP Y+ +++ +I + E S+DE
Sbjct: 58 VRSAMSGIMASRLCPQ--LIFVP-----PRFERYKEVSAQISTIFRQHTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T K GN S +
Sbjct: 111 YLDVT------------------------------HHKKGNPSAS--------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI +E+R ++LK T SAGI+ NK +AK+AS +NKP Q T+P V L
Sbjct: 126 -------LIASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPPEEVLSFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L I+K + GK+ LG+ T DL SED L+ +G +G + + RG+
Sbjct: 179 ENLDIRKFFGI-GKVTADKMYGLGIFTGADLKLKSEDFLETHFG-KSGRYFYRAVRGVHH 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV + KS G+ ++F + + ++ + L EELS+RL ++K T+T
Sbjct: 237 SEVSPERIQKSVGAERTF--NENISSEVFLEGKIIALAEELSKRLG----RSKLSGKTIT 290
Query: 301 LHASAFKSSDSDSRKKFPSKSCP 323
L K +D +++ + SK+ P
Sbjct: 291 LK---LKYADFNTQTR--SKTLP 308
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 122/284 (42%), Gaps = 62/284 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G AK+ CP++ V+ R K + R E + E S+DE Y
Sbjct: 58 VRSAMSGFLAKKRCPELIFVRPRFDRYKEISTQIRKIFYEYTDL------VEPLSLDEAY 111
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T ++K GN S +
Sbjct: 112 LDVT------------------------------KNKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++LK+ T SAGI+ NK +AK+AS NKP Q TVP V L+
Sbjct: 126 ------LIAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEEVLDFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ +LG+ T DL D L E +G +G + +N+ RGI
Sbjct: 180 ALDIRKFYGV-GKVTAERMYQLGIFTGKDLKTKDVDFLTEHFG-KSGKFYFNVVRGIHLS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
EV+ + KS G+ ++F L + + L + EL +RL
Sbjct: 238 EVKPNRIAKSVGAERTFSD--NLTSEIFMLEKLENIANELEKRL 279
>gi|402903152|ref|XP_003914442.1| PREDICTED: DNA polymerase iota [Papio anubis]
Length = 737
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 50/394 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 101 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 154
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 155 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLL 196
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 197 IGSQIAAEMREAMYNHLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLILSLN 256
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 257 HIKEIPGIGYKTAKCLE-ALGINSVHDLQTFSSKILEKELGISLAQRIQKLSFG----ED 311
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 312 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 368
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGS 357
+ S R+ S+ CP+ + GT T + ++ F VK
Sbjct: 369 RRYTSEKHCGRE---SRQCPIPSHVIQKLGTGNYDVMT-PMVDILMKLFRNMVNVKMP-- 422
Query: 358 HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ +T LSV + V + ++ Y+ P
Sbjct: 423 ----FHLTLLSVCFCNLKAVNTAKRGLIDYYLTP 452
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 141/322 (43%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G +AK +CP++ V K YR +S+ RK ++
Sbjct: 56 VRSAMTGIQAKRLCPELIFV-------KPRFERYRE-----ISLKIRK----------IF 93
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE L + N+ AT
Sbjct: 94 YEYTDLVE-------PLSLDEA--------YLDVTQNKKNNPSAT--------------- 123
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI +E+R +++ E T SAGI+ NK +AK+AS NKP Q T+ V L+
Sbjct: 124 ------LIASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDDVTLFLE 177
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
SL IKK + GK+ T +LG+ T DL + + L+E +G +GT +++ RGIS
Sbjct: 178 SLDIKKFYGI-GKVTTEKMYQLGIYTGQDLKSKTIEYLEEHFG-KSGTHYYHLVRGISNS 235
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V K + + KS T + + ++ + E +++ L L+++K T+TL
Sbjct: 236 PV------KPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTL 289
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD ++ SK+ P
Sbjct: 290 -----KIKYSDFSQQTRSKTLP 306
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 147/354 (41%), Gaps = 75/354 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M G A ++CP + V K D Y+ V I E S+DE
Sbjct: 59 VRSAMAGSLAIKLCPHLIFV-------KTDFERYKEISDRVRKIFFEYTDLVEPLSLDEA 111
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S +
Sbjct: 112 YLDVT------------------------------ENKKGNPSAS--------------- 126
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ + T SAGI+ NK +AK+AS +NKP Q TVP V L
Sbjct: 127 -------LIALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEEVIPFL 179
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L IKK +G + + G+ T DL S + L E++G +G + +NI RGI
Sbjct: 180 EVLDIKKFYGVGKVMKEKMYRH-GIYTGLDLKGKSIEFLSENFG-KSGAYYYNIVRGIHN 237
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ KS + ++F + +AS L +L +SE + L+++K T+T
Sbjct: 238 SEVKPSRTRKSLAAERTFS-----ENIASEIFMLEKLA-PISEEVERRLKKSKVAGKTVT 291
Query: 301 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 352
L K SD + SK+ PL + +T LFQ G++ + G+
Sbjct: 292 L-----KIKYSDFTLQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGI 340
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +E+R ++L T T SAGI++NK LAK+AS +NKP Q +P + + LP+KK
Sbjct: 122 IASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGPSFIQRLPVKKF 181
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + ++LG+ T DL + S + L + +G G + + IARGI +VQ
Sbjct: 182 HGVGPATAEKM-HQLGIETGADLKQRSFEFLSQHFG-KAGAYFYGIARGIDNRDVQPDRK 239
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 306
KS G+ +FP + V ++ QL L ++C N A T+TL F
Sbjct: 240 RKSIGAEDTFP-----EDVFELETAREQL-HPLVSKVCQFCSNNDTGAKTVTLKVKYF 291
>gi|449438635|ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1155
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 140/371 (37%), Gaps = 75/371 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA---SID 58
V + M +AK +CP LV P D SY + IL + CE+ S D
Sbjct: 483 VKAGMFVRDAKALCPH--LVIFPY-----DFKSYEGVADQFYDILHK--HCEKVQAVSCD 533
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
E +LD++ + VD E L S I
Sbjct: 534 EAFLDISGT-------------NNVDPEVLASKI-------------------------- 554
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
R ++ T T SAGIA N ++A+LA+ KP Q +P V
Sbjct: 555 ---------------RKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDD 599
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L+ LPIK + +G L L+ V T L S+D LQ+ +G TG LWN +RG+
Sbjct: 600 YLNPLPIKDLPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGV 658
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 298
V L+ +S G K Q +L LC+E+S RL Q + T
Sbjct: 659 DNRAVG--LIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGR----T 712
Query: 299 LTLHASAFKSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQG 356
TL + + + K C L + T + D + Q +++ G F + +
Sbjct: 713 FTLKIKKRRKNADEPTKYMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKE 772
Query: 357 SHYSGWRITAL 367
G +++ L
Sbjct: 773 IRGIGLQVSKL 783
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 23/280 (8%)
Query: 29 KADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAAEAMLAETPPESLD---EVD 84
K L YR ++ ++ + E+AS+DE Y+DL L + PE D + D
Sbjct: 133 KVSLDPYRRESRKIFKVIKLFCKNVEKASVDEGYIDLGSLIYERLRKIFPEIADCEHQDD 192
Query: 85 EEAL-----KSHILGLESKDGNDSKATVK----EWLCRCDADHRDKLLACGVLIVTELRM 135
E L KS + + +K T+K ++ R D D + G I+ E+R
Sbjct: 193 NELLPPLPDKSSSVIRAYGEIYYNKETLKLKKKDFPIRL-HDWDDACILLGSQILFEIRW 251
Query: 136 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 195
++ K FT S G+A NK++AKLA G KP QT + S++ L++ + M+ +GGK
Sbjct: 252 EIFKVLGFTTSGGVARNKVMAKLAGGFLKPDNQTIILNSNINSFLENFELDDMRSMGGKA 311
Query: 196 GTSLQNELGVTT---------VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 246
G + LGV T + D E K + S T ++++ RG EE+ R
Sbjct: 312 GQLILKTLGVPTDTKSNTIAYIRDNFTLGELKDKLSNDSVTSEKIYDLVRGNYSEELTFR 371
Query: 247 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
KS S K+F + T+ WL +L R+
Sbjct: 372 TDVKSMMSRKNFTSRTYVTTLKDAIDWLKVFSGDLVNRIV 411
>gi|71653214|ref|XP_815248.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70880290|gb|EAN93397.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 140/321 (43%), Gaps = 45/321 (14%)
Query: 9 DEAKEVCPQIELVQVPV-------------AR---GKADLSSYRNAGSEVVSIL-ARKG- 50
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 51 RCERASIDEVYLDLTDAAEAMLAET--PPESLDEVDEEALKSHILGLESKDGNDSKATVK 108
E+ S+DE YLD+T AA+ LA P E+ + E+ D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASIRLPSAQCSYHLEDVMHP-----ETNVIPDRRAEID 171
Query: 109 EWLC----------------RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHN 152
WL + +H+ LL +V +LR ++ +E + CSAGIAHN
Sbjct: 172 AWLFEKGKEFNEIFDTALHPQATVEHQ-LLLGAASRVVWKLREKIYQELCYDCSAGIAHN 230
Query: 153 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGDL 211
K+LAK S +KP QQT + V + P + + GGK G S+ G D
Sbjct: 231 KILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIHGFGGKFGESVCRACGNAELFRDA 290
Query: 212 LKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQ 271
+KLQ G + GT+ + R E++Q + + K+ + KSF P + + ++
Sbjct: 291 WLVPLEKLQSVLGVDDGTYAFYRLRCHGKEKIQEQSVTKTLMASKSFSPPTS--SSEGLR 348
Query: 272 HWLNQLCEELSERLCSDLEQN 292
W+ L EL R E N
Sbjct: 349 KWITVLSSELCARYKEFCETN 369
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPADVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K+ L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKYDLVMLLKRFG-KFGHILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|195572629|ref|XP_002104298.1| GD18521 [Drosophila simulans]
gi|194200225|gb|EDX13801.1| GD18521 [Drosophila simulans]
Length = 712
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 142/331 (42%), Gaps = 35/331 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 47 EAQRICPDLVLV------NGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 100
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A V E L+ + DG C C R LA G
Sbjct: 101 ELRQAH--------VAEALLRPPVGHTYPADGTPLST------CDCGCAQR---LAIGTR 143
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E+R ++ TC AGIA+NK+LAKL NKP QQT + + + + L +K+
Sbjct: 144 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSNKPNQQTVLVSTYAEQFMRELGDLKR 203
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 204 ITGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSSVRPSG 262
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 263 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 319
Query: 308 SSDSDSRKK------FPSKSCPLRYGTAKIQ 332
SS ++++ F + CP G +K+Q
Sbjct: 320 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 350
>gi|328780415|ref|XP_003249798.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Apis
mellifera]
Length = 564
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 144/324 (44%), Gaps = 35/324 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA +CP + LV DL++YR+ ++++ IL + ER D+ ++D+
Sbjct: 65 MSVQEALRLCPGLALVN------GEDLTNYRHFSTKILEILHQFTPLVERLGFDDNFMDV 118
Query: 65 TDAAEAMLAETPPESLD---EVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
T + + L+ +++E I G A+ +E C C A
Sbjct: 119 TSIVQKYMNSGNNSELNINISMEDENPVGEIFG----------ASEEECPCGCHAR---- 164
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QQT + S LL
Sbjct: 165 -LIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLS 223
Query: 182 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++ + K+ +G K T L + T+ DL K S + L+ G + L + A GI
Sbjct: 224 NIGSVSKIPGVGQK-TTQLLMSNNIKTIDDLRKTSLETLEMKIGIDLARKLKDNAEGIDE 282
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ +S G F +++ VA V+ L L L+E D +A LT
Sbjct: 283 TVVKPTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPVAMRLT 337
Query: 301 LHASAFKSSDSDSRKKFPSKSCPL 324
+ F S S R+ ++ C L
Sbjct: 338 VRKHDFNKSSSGKRE---TRQCAL 358
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 128/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M G A++ CP L+ VP Y+ + SI R E S+DE
Sbjct: 44 VHSAMSGVLARKRCPH--LIFVP-----PRFERYKEISRHIRSIFHRYTDLVEPLSLDEA 96
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +K GN S
Sbjct: 97 YLDVT------------------------------HNKVGNPS----------------- 109
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + ET T SAGI+ NK +AK+AS +NKP Q TV ++ L
Sbjct: 110 -----ATLIAQEIRQAIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDEIQDFL 164
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D+L +KK + GK+ LGV T DL + S L+ ++G N+G + +ARGI
Sbjct: 165 DALNVKKFYGI-GKVTAEKMYALGVFTGKDLRQKSLAFLERNFG-NSGKHYYQLARGIHN 222
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EVQ + KS G+ ++F + + S + L +L + ++ + L Q K TLT
Sbjct: 223 GEVQPFRIRKSVGAEQTFA-----ENLTSEIYMLKEL-DSIASEVAMRLAQQKVAGKTLT 276
Query: 301 L 301
+
Sbjct: 277 I 277
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 13/212 (6%)
Query: 112 CRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D K ++ +I E+R ++ E T SAGI+ NK +AK+AS NKP Q TV
Sbjct: 110 AYLDVTQNKKNMSSATMIAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTV 169
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
+ V L+ LPIKK + GK+ T +LG+ T DL S D L++ +G +GT+
Sbjct: 170 APNEVLLFLEQLPIKKFYGV-GKVTTEKMYQLGIFTGLDLKSKSLDFLEKHFG-KSGTFY 227
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+++ RG+ EV+A + KS + +F L + + L+++ EL R L++
Sbjct: 228 YHVVRGVHNGEVKANRIAKSVAAEHTF--DINLTSEIFMLEKLSKIANELERR----LQK 281
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCP 323
+++ T+TL K SD ++ SK+ P
Sbjct: 282 HQKAGKTVTL-----KIKYSDFTQQTRSKTLP 308
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AKE CPQ+ V AR K R E + E S+DE Y
Sbjct: 57 VRSAMPSKTAKEKCPQLIFVPPRFARYKEISKKIREIFYEYTDL------VEPLSLDEAY 110
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T+ + G+ES +
Sbjct: 111 LDVTENKK------------------------GMESAN---------------------- 124
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+
Sbjct: 125 ------LIAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKMEEFLE 178
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP++K + GK+ + LG+ DL K S + L +G +G +N+ RGI
Sbjct: 179 ELPVEKFYGV-GKVTANKMFSLGIYKGKDLKKKSLEDLIRIFG-KSGQHYYNVVRGIHTS 236
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS ++F + + Q +N+ E L++ L L++N + TLTL
Sbjct: 237 EVKPHRIQKSVAVERTF-----FEDLLDEQQ-INEKLESLAQELHQRLQKNNILGRTLTL 290
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M G +A+ +CP++ V K + + Y+ ++ I + E S+DE
Sbjct: 58 VRSAMSGAQAQRLCPELIFV-------KTNFTRYKECSQQIREIFYEYTDKVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S
Sbjct: 111 YLDVT------------------------------ENKKGNPS----------------- 123
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L
Sbjct: 124 -----ATLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEEVIPFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L I+K + GK+ G+ T DL S + L+E +G +GT+ ++I RGI
Sbjct: 179 ETLDIRKFYGI-GKVTAEKMYLHGIFTGNDLKSKSLEYLEEHFG-KSGTYYYHIVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV K H + KS R + + ++ + E ++E + LE++ T+T
Sbjct: 237 SEV------KPHRTRKSLGAERTFSENITSELFMMERLEHIAEEIERRLEKSNVAGKTVT 290
Query: 301 L 301
L
Sbjct: 291 L 291
>gi|354806700|ref|ZP_09040181.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
gi|354514884|gb|EHE86850.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
Length = 376
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA + +V ++ ++LKET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 LAHTIDVVAYIQKEILKETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSR 193
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K + +G K +Q ELG+ T DLL+ SE L +++G G L+ RGI
Sbjct: 194 LPIEKFRGVGKKTAPRMQ-ELGILTGADLLEQSEMMLMQNFG-KLGYGLYRHVRGIDNRP 251
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
V + KS G+ ++ P L + VQ L +L EL R L +N++ T+ L
Sbjct: 252 VAYQRERKSIGNENTYGQP--LISEEQVQVELKKLAIELERR----LRKNQKHGLTVVLK 305
Query: 303 ASAFKSSDSDSRKKF 317
+ RK F
Sbjct: 306 VRNRQFETITKRKTF 320
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 142/322 (44%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+++CP + V K YR A I EV+
Sbjct: 58 VRSAMAGALARKLCPDLIFV-------KTRFDRYREIS---------------AQIREVF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE +++ E+K GN S
Sbjct: 96 HEYTDLVE-------PLSLDE-------AYLDVTENKKGNPS------------------ 123
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+
Sbjct: 124 ----ATLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEEVLPFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ +LG+ T DL S + LQE +G +G +N+ RGI
Sbjct: 180 ALDIRKFYGV-GKVTAEKMYQLGIFTGNDLKSKSLEFLQEKFG-KSGNHYYNVVRGIHLS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS G+ ++F + ++S L +L E ++E + L+++ T+TL
Sbjct: 238 EVKPHRIRKSLGAERTFS-----ENISSEIFMLERL-ENIAEEIERRLKKSNVAGKTVTL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD K SK+ P
Sbjct: 292 -----KIKYSDFTLKTRSKTLP 308
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 138/322 (42%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+ CP++ V+ R K R E + E S+DE Y
Sbjct: 58 VRSAMAGAIARRNCPELIFVRPRFDRYKEISKQIRGIFFEYTDL------VEPLSLDEAY 111
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T E+K GN S
Sbjct: 112 LDVT------------------------------ENKKGNPS------------------ 123
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ +T T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 124 ----ATLIAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ LG+ T DL + S D L++ +G +G++ +N+ RGI
Sbjct: 180 NLDIRKFYGV-GKVTAEKMYRLGIFTGFDLKQKSVDFLEKHFG-KSGSYYYNVVRGIHLS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ +PKS G+ ++F + ++S L +L E ++ L L+++K T+TL
Sbjct: 238 SVKPHRIPKSVGAERTF-----FENLSSEIFMLEKL-ENIASELEKRLQKSKIAGKTITL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD + SK+ P
Sbjct: 292 -----KIKYSDFTLQTRSKTLP 308
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
+A E CP + ++ DL+ YR +V L + + R DE Y+D+T+
Sbjct: 58 KALEKCPDLIVI------NGEDLTEYREVSFKVTDYLKKFSTKVHRLGFDENYIDVTELV 111
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
+ L + +G ++ N TVK C C+ R + G
Sbjct: 112 QCRLNQFQGRLF------------VGYLYQNSN----TVKAQACDCNCRLR---MIIGSQ 152
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R + T S GIAHNKML+K+ SG++KP QT + LL SL ++K+
Sbjct: 153 IAAEMRQGLWNVFSLTSSGGIAHNKMLSKIVSGLHKPNLQTAIYPEDTLDLLHSLELRKI 212
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G LQ+ +G+TTV +L L+ + L+ +GI +V A
Sbjct: 213 AGIGSATNNKLQS-VGITTVKELSTLPLAVLKTHFPTPQACTLFQWCKGIDDSDVVAATK 271
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
PKS G SF R +AS + ++ L L RL E + + T+ H
Sbjct: 272 PKSIGVEDSF--SRCCTMIAS-KKRISDLIRHLLSRLVDGCEHPQTVKLTIIKH 322
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 159/371 (42%), Gaps = 88/371 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V ++M G AK++CPQ+ +V K+ S Y+ V IL+ +DE
Sbjct: 138 VRAAMPGFIAKKLCPQLVIV-------KSHFSKYQEVSQTVREILSNYDPLFSSVGLDEA 190
Query: 61 YLDLTDA-------------------------------AEAM-----------LAETPPE 78
YLD+T+ AE++ L + PE
Sbjct: 191 YLDITEYVTELMRGKEEQVPVEEENRVTQSFGDSSVENAESLKHSLVHQTDTKLIQIDPE 250
Query: 79 SLDEVDEEALK-----SHILGLESKDG-----NDSKA-TVKEWLCRCDADHRDKLLACGV 127
S E D + L+ S+ ++S+ G ND+ + + + +C D + C
Sbjct: 251 SSQETDAKLLQIDDPESYSTDMKSQHGSNESLNDTDSHQIDDLICDSDQCLPNSYWECAE 310
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL--LDSLPI 185
+V+E+R ++ T+ T SAGIA NKMLAK+AS MNKP Q +P S K L + LPI
Sbjct: 311 KVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPI 370
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNIARGISGEE 242
+K+ + GK+ + N LG+ T D+ DK L+ + + + NI GI
Sbjct: 371 RKVSGI-GKVTEKMLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNICLGIGSCT 425
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLEQN--KRIA 296
V + KS + ++FP W L Q C +L L ++E++ K
Sbjct: 426 VHSEWERKSISTERTFPDI-----------WKPSELFQKCHKLCYSLTEEVEESNIKGKT 474
Query: 297 HTLTLHASAFK 307
TL L SAF+
Sbjct: 475 VTLKLKTSAFE 485
>gi|321259275|ref|XP_003194358.1| eta DNA polymerase [Cryptococcus gattii WM276]
gi|317460829|gb|ADV22571.1| eta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 689
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 127/315 (40%), Gaps = 53/315 (16%)
Query: 9 DEAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARK--- 49
++AK++CP + + V R K L YR +++I K
Sbjct: 89 EDAKKMCPHLVVQHVATYRNGENEAGYWDNVNPRTHKVSLDVYRRESLRILAIFKEKIPR 148
Query: 50 GRCERASIDEVYLDLTD-------AAEAMLAETPPESLDEVDEEALKSH----------- 91
G E+ASIDE +LDLT AA L++ P ++ + D
Sbjct: 149 GEIEKASIDEAFLDLTPMVIEKLLAAHPYLSKVPEDAPNGFDSPLPPPPPIDWSKAGSVF 208
Query: 92 -ILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIA 150
I G E G D + +E D + D R + A
Sbjct: 209 PIDGKEDGTGTDDEEGGQEDERSEDGEGPDA------------RASSSDRDSWEDWALCM 256
Query: 151 HNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGD 210
++++ L S KP QT + ++V L+ ++ LGGKLG ++ E TVGD
Sbjct: 257 GGELMSNLCSAWRKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQEFDAKTVGD 316
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+L S D +Q+ +G W++NI RGI EV R+ KS + KS A+ +
Sbjct: 317 MLTVSLDAMQKKFG-EESIWVYNILRGIDHSEVTERVSTKSMLASKSIRP--AVTSPQQG 373
Query: 271 QHWLNQLCEELSERL 285
HWL+ L EL RL
Sbjct: 374 YHWLSILAGELKVRL 388
>gi|342183906|emb|CCC93386.1| putative DNA polymerase eta [Trypanosoma congolense IL3000]
Length = 517
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 131/308 (42%), Gaps = 34/308 (11%)
Query: 9 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILARKG-- 50
+EA++ CP ++ V A G K L YR A ++ IL
Sbjct: 57 EEARQKCPHVKFSHVATYAAGEVEYHYHENPRKQTHKVALEPYREASRKIFRILDEFDGV 116
Query: 51 RCERASIDEVYLDLTDAAEAMLAET---PP--ESLDEVDEEALKSHILGLESKDGNDSKA 105
E+ S+DE +LD+T AA+ + A T PP E E + L I + + K
Sbjct: 117 DVEKGSVDEAFLDVTRAAQQLQASTGLHPPGGECRLEDIVDPLTVIIPNRQEEISAWLKG 176
Query: 106 TVKEWLCRCDADHRDK-------LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 158
K ++ D + LLA +V+++R ++ E F CSAGIAHNK+LAK
Sbjct: 177 YGKTFMDVFDPSLHPQSTTESIVLLAAASHVVSKIRQRIYDELRFDCSAGIAHNKLLAKS 236
Query: 159 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 218
S +KP QQT + V + +P +K++ GGK G + G +
Sbjct: 237 ISARHKPNQQTLLFPDCVASAMWDMPFRKIRGFGGKFGEIVHKACGCKEMCQETWLFSLP 296
Query: 219 LQESYGFN--TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQ 276
+ S+ N + + RG ++ R + KS + K+F P T V+ W+
Sbjct: 297 VMRSFFVNDCDAEYAYRRLRGYDEGKIAERSISKSLIASKAFNPPSL--TTDGVKRWVVV 354
Query: 277 LCEELSER 284
L ELS R
Sbjct: 355 LASELSSR 362
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 53 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAY 106
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 107 LDVT------------------------------VNKKGNPS------------------ 118
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD
Sbjct: 119 ----ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLD 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI
Sbjct: 175 RLDVRKFYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRS 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 233 EVQPFRIRKSVGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 286
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 64/305 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 44 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 98 LDVT------------------------------VNKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ S V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESEVQNFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ +L + S + L+ ++G N+G + + +ARGI
Sbjct: 166 RLDVRKFYGI-GKVTAEKMYQLGIFKGRNLREKSLEFLERNFG-NSGNYYYELARGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F L + + L+ + E+++ RL D +Q TL +
Sbjct: 224 EVQPFRIRKSVGAEETF--AENLTSEVYMLRELDHIAEDVARRL--DKQQVAGKTVTLKI 279
Query: 302 HASAF 306
S F
Sbjct: 280 KYSNF 284
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 44 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 98 LDVT------------------------------VNKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI
Sbjct: 166 RLDVRKFYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 224 EVQPFRIRKSVGAEETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 277
>gi|452820346|gb|EME27389.1| DNA polymerase iota subunit [Galdieria sulphuraria]
Length = 525
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 38/287 (13%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG---RCERASIDEVYL 62
M +A ++CP + L+ +DL YR A SE++S++ E +DE ++
Sbjct: 66 MLVKDAYDLCPDLILLDA------SDLKDYRIACSEIISLIKDTFGVVAVENLGLDEFFI 119
Query: 63 DLT----DAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
D+T D E ET ++K +E +D C C
Sbjct: 120 DVTKILCDREEEYSCET-----------SIKGFCWPVEERDS-----------CICFEKE 157
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
K + E+R + + + TCS G++++K+L+KLA+ ++KP +QT + V+
Sbjct: 158 EAKPFVAASHLCFEIRETIKSKLQLTCSGGLSNSKLLSKLAASIHKPDEQTVILPQCVES 217
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L +L ++K+ +G SL + V+T L ++L E +G G L+NI RGI
Sbjct: 218 YLSNLNLRKLPGIGSATYQSLVDHFLVSTCEQLRCIPVERLVEVFGSRLGIRLFNICRGI 277
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
E V L KS + F + + V+ +L + E L +RL
Sbjct: 278 DEESVHDTSLVKSISCEERFSKT---ERWSEVERYLGIVVERLLDRL 321
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 306
+ KS G+ ++F P L + + L+ + E+++ RL D +Q TL + S F
Sbjct: 230 IRKSVGAEETF--PENLTSEVYMLRELDHIAEDVARRL--DKQQVAGKTVTLKIKYSNF 284
>gi|395830769|ref|XP_003788490.1| PREDICTED: DNA polymerase iota isoform 1 [Otolemur garnettii]
Length = 737
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 37/325 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M EAKE CPQ+ LV DL+ YR +V +L ER DE
Sbjct: 97 VKKCMPVREAKEKCPQLVLV------NGEDLTRYREMSYKVTELLKEFSPVVERLGFDEN 150
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++DLT+ E L + DE+ ++ H+ + + +D
Sbjct: 151 FVDLTEMVEKRLQQL---QSDELSAVSVSGHVYNNQCINLDDILHV-------------- 193
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+LL G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+
Sbjct: 194 RLLV-GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLI 252
Query: 181 DSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
SL IK++ +G K L+ LG+ +V DL S L + G + + ++ G
Sbjct: 253 HSLNHIKEIPGIGYKTTKRLE-ALGINSVHDLQTCSSKILVKELGMSVAHHIQKLSFGED 311
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S SF + + + + +L L R+C Q+ R HT+
Sbjct: 312 NSPVTPSGPPQSFSEEDSF---KKCSSEVEAKKKIEELLASLLNRVC----QDGRKPHTV 364
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL 324
L + S SR+ S+ CP+
Sbjct: 365 RLTLRRYSSEKYCSRE---SRQCPI 386
>gi|397513971|ref|XP_003827278.1| PREDICTED: DNA polymerase iota [Pan paniscus]
Length = 739
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 103 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 156
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L + DE+ + H+ +S + D H L
Sbjct: 157 TEMVGKRLQQL---QSDELSVVTVSGHVYNNQS-------------INLLDVLHIR--LL 198
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 199 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 258
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 259 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG----ED 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 314 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 370
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 371 RRYSSEKHYGRE---SRQCPI 388
>gi|307104135|gb|EFN52390.1| hypothetical protein CHLNCDRAFT_138846 [Chlorella variabilis]
Length = 693
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 117/278 (42%), Gaps = 28/278 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 69
EA+ CP I LV DL+ YR A +++++L R G E+ +DE+++D T A+
Sbjct: 67 EAQRRCPHIVLVS------GEDLTPYRAASKQILAVLKRYGTAEKLGLDEIFVDATPEAQ 120
Query: 70 AMLAETPPESLDEVDEEALKSHILGLE-SKDGNDSKATVKEWLCRCDADHR--------- 119
LA S E+ H+ G E +D ++
Sbjct: 121 RRLAALA-RSGCELPAWQGHVHLSGTELVQDSRHRPMDLRAVAAGQAPAAGGAAASCGAA 179
Query: 120 ----------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
+ LL G +I E R V E + SAG+A NK LAKL SG++KP QT
Sbjct: 180 GAGGSGGNSWEALLRIGSVIAAEARAAVRSEAGYRTSAGVACNKTLAKLCSGLHKPDDQT 239
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+P + LP++ + +G K+ G+ T DL + +L + +G +G
Sbjct: 240 VLPPPEGAAFVAPLPVRALPGVGYKM-EQALTAAGLATAADLRALTRHQLMQRFGERSGA 298
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 267
+L RG VQ R PKS SF R L V
Sbjct: 299 FLHAACRGKDPSPVQERGPPKSVTVEDSFKTCRGLAAV 336
>gi|114673193|ref|XP_001156755.1| PREDICTED: DNA polymerase iota isoform 3 [Pan troglodytes]
Length = 739
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 103 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 156
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L + DE+ + H+ +S + D H L
Sbjct: 157 TEMVGKRLQQL---QSDELSVVTVSGHVYNNQS-------------INLLDVLHIR--LL 198
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 199 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 258
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 259 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG----ED 313
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 314 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 370
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 371 RRYSSEKHYGRE---SRQCPI 388
>gi|41057954|gb|AAR98934.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 320
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 31 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 83
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 84 YLDVTDSVH------------------------------------------CHGSA---- 97
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 98 ------TLIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 151
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI
Sbjct: 152 QTLPLAKIPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 209
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 210 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 251
>gi|71656413|ref|XP_816754.1| DNA polymerase eta [Trypanosoma cruzi strain CL Brener]
gi|70881903|gb|EAN94903.1| DNA polymerase eta, putative [Trypanosoma cruzi]
Length = 503
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 141/322 (43%), Gaps = 47/322 (14%)
Query: 9 DEAKEVCPQIELVQVPV-------------AR---GKADLSSYRNAGSEVVSIL-ARKG- 50
++A+E CP +++ V AR K L YR A ++ +IL + +G
Sbjct: 57 EKAREKCPHVKVSHVATYAVGDTEYKYHENARKGTHKVSLEPYREASRKIFNILRSFEGV 116
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 107
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 117 EVEKGSVDEAYLDVTLAAQRELASI------RLPSAQCSSHLEDVMHPETNVIPDRRAEI 170
Query: 108 KEWLC----------------RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
WL + +H+ LL +V +LR ++ +E + CSAGIAH
Sbjct: 171 DAWLFEKGKEFNEIFDTALHPQATVEHQ-LLLGAASRVVWKLREKIYQELCYDCSAGIAH 229
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG-VTTVGD 210
NK+LAK S +KP QQT + V + P + ++ GGK G S+ G D
Sbjct: 230 NKILAKSISSRHKPNQQTLLLPDRVASAVWDAPYQSIRGFGGKFGESVCRACGNAELFRD 289
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+KLQ G + G + + R E+++ + + K+ + KSF P + + +
Sbjct: 290 AWLVPLEKLQSVLGVDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGL 347
Query: 271 QHWLNQLCEELSERLCSDLEQN 292
+ W+ L EL R E N
Sbjct: 348 RKWITVLSSELCARYKEFCETN 369
>gi|343960024|dbj|BAK63866.1| DNA polymerase iota [Pan troglodytes]
Length = 715
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 142/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L + DE+ + H+ N S + R L
Sbjct: 133 TEMVGKRLQQL---QSDELSVVTVSGHVYN------NQSINLLDVLHIR---------LL 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G E
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFG----ED 289
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 290 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|119583405|gb|EAW63001.1| polymerase (DNA directed) iota, isoform CRA_b [Homo sapiens]
Length = 429
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 103 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 156
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L+
Sbjct: 157 TEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV- 199
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 200 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 258
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 259 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 317
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 318 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 370
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 371 RRYSSEKHYGRE---SRQCPI 388
>gi|417671081|ref|ZP_12320581.1| DNA polymerase IV [Shigella dysenteriae 155-74]
gi|332097566|gb|EGJ02545.1| DNA polymerase IV [Shigella dysenteriae 155-74]
Length = 345
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|118403518|ref|NP_001027479.2| polymerase (DNA directed) iota [Xenopus (Silurana) tropicalis]
gi|113197613|gb|AAI21200.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 141/325 (43%), Gaps = 37/325 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M +A+E CPQ+ LV DL+ YR +L + ER DE
Sbjct: 97 VTKLMLIKDAREKCPQLVLV------SGEDLTPYREMSYRATELLEEFSPQVERLGFDEN 150
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
Y+D+T+ + L EE G+ +D K V +W A R
Sbjct: 151 YIDVTELVDKKL-----------QEERGNGRNPGVCGHVYSDQKMNVNDW-----AHVR- 193
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+A G I +E+R + T AG A NK+LAKL SG +KP QQT + S L+
Sbjct: 194 --IAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHSHLI 251
Query: 181 DSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+SL +K++ +G K L++ LG++ + DL L++ +G + + ++RG
Sbjct: 252 NSLDHVKRIPGIGYKTSKRLES-LGLSRISDLQACPITLLEKEFGSSVAHRIQMLSRGED 310
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S SF + TV+ V+ + + L R+ D RI HTL
Sbjct: 311 DSAVVPSGPPQSISDEDSF---KKCSTVSEVKIKMEERLRNLLVRISKD----GRIPHTL 363
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL 324
L F S+ ++ S+ CP+
Sbjct: 364 RLTIRQFSPSNKWFNRE--SRQCPI 386
>gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
Length = 359
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 129/311 (41%), Gaps = 70/311 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V S+M EAK+ CP V+ D + YRN S+V+ IL+R E SIDE
Sbjct: 55 VHSAMSLFEAKKKCPHAIFVE-------GDYAIYRNYSSKVMDILSRHSSLVEVVSIDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
Y+D++ LK +D + T K++
Sbjct: 108 YMDVS---------------------FLK-----------DDPEMTAKQY---------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+L+ VLK T TCS GIA NK++AK+AS KP +P L
Sbjct: 126 ---------GRKLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LPI + +G K SL ++ + T+ DL K D L E YG G + + A GI
Sbjct: 177 ATLPIGAIPGIGSKTEKSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDK 234
Query: 241 EEVQA-RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAH 297
V PKS G+ +F A T+ L + EL ++ C L+ Q +
Sbjct: 235 RPVDGEEYFPKSIGAETTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGF 288
Query: 298 TLTLHASAFKS 308
+L L S F++
Sbjct: 289 SLKLRYSDFRT 299
>gi|110591264|pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|110591267|pdb|2DPJ|A Chain A, Structure Of Hpoli With Dna And Dttp
gi|119389500|pdb|2FLN|A Chain A, Binary Complex Of Catalytic Core Of Human Dna Polymerase
Iota With Dna (Template A)
gi|119389503|pdb|2FLP|A Chain A, Binary Complex Of The Catalytic Core Of Human Dna
Polymerase Iota With Dna (Template G)
gi|122920195|pdb|2FLL|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Dna And
Dttp
gi|218681853|pdb|3EPG|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine
gi|218681856|pdb|3EPI|A Chain A, Structure Of Human Dna Polymerase Iota Complexed With
N2-Ethylguanine And Incoming Ttp
gi|237640547|pdb|3G6V|A Chain A, Dna Synthesis Across An Abasic Lesion By Human Dna
Polymerase-Iota
gi|237640550|pdb|3G6X|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dgtp With An
Abasic Site At The Templating Position
gi|237640553|pdb|3G6Y|A Chain A, Ternary Complex Of Dna Polymerase Iota:dna:dttp With An
Abasic Site At The Templating Position
gi|238828276|pdb|3GV7|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dttp
gi|238828279|pdb|3GV8|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Dgtp
gi|309319996|pdb|3NGD|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|309320677|pdb|3OSN|A Chain A, Structural Basis For Proficient Incorporation Of Dttp
Opposite O6- Methylguanine By Human Dna Polymerase Iota
gi|323714640|pdb|3Q8P|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite
8-Oxo-Guanine
gi|323714643|pdb|3Q8Q|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite
8-Oxo-Guanine
gi|323714646|pdb|3Q8R|B Chain B, Human Dna Polymerase Iota Incorporating Dgtp Opposite
8-Oxo-Guanine
gi|323714649|pdb|3Q8S|B Chain B, Human Dna Polymerase Iota Incorporating Dttp Opposite
8-Oxo-Guanine
gi|390981111|pdb|4EBC|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981114|pdb|4EBD|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|390981117|pdb|4EBE|A Chain A, Conformationally Restrained
North-Methanocarba-2'-Deoxyadenosine Corrects The
Error-Prone Nature Of Human Dna Polymerase Iota
gi|402550536|pdb|4FS1|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dttp By
Human Polymerase Iota
gi|402550539|pdb|4FS2|A Chain A, Base Pairing Mechanism Of N2,3-Ethenoguanine With Dctp By
Human Polymerase Iota
gi|440690932|pdb|4EYH|B Chain B, Human Dna Polymerase Iota Incorporating Dctp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
gi|440690936|pdb|4EYI|B Chain B, Human Dna Polymerase Iota Incorporating Datp Opposite N-
(deoxyguanosin-8-yl)-1-aminopyrene Lesion
Length = 420
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L+
Sbjct: 133 TEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV- 175
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 176 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 294 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 347 RRYSSEKHYGRE---SRQCPI 364
>gi|22095606|sp|P58963.1|DPO4_ESCFE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19568915|gb|AAL91969.1|AF483106_1 DNA polymerase DinB [Escherichia fergusonii]
Length = 331
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 42 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 94
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 95 YLDVTDSVH------------------------------------------CHGSA---- 108
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L
Sbjct: 109 ------TLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFL 162
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 163 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 220
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|395749898|ref|XP_003779026.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase iota [Pongo abelii]
Length = 703
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 143/321 (44%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M + KE CPQ+ LV D + YR +V +L ER DE ++DL
Sbjct: 96 MNVRDXKEKCPQLVLV------NGEDXTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 149
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + +D L
Sbjct: 150 TEMVEKRLQQL---QSDELSVMTVSGHVYNNQSINLHDILHI---------------RLL 191
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 192 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 251
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+++V DL FS L++ G + + ++ G E
Sbjct: 252 HIKEIPGIGYKTAKCLE-VLGISSVHDLQTFSPKILEKELGISVAQRIQKLSFG----ED 306
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ ++P G +SF + K +S N++ EEL L + + Q+ R HT+ L
Sbjct: 307 NSPVIPS--GPPQSFSEEDSFKKCSSEVEAKNKI-EELLASLLNRVCQDGRKPHTVRLII 363
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 364 RRYSSEKHYGRE---SRQCPI 381
>gi|332028674|gb|EGI68708.1| DNA polymerase iota [Acromyrmex echinatior]
Length = 576
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 130/291 (44%), Gaps = 33/291 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA +CP++ LV DL++YR+ +++ IL + ER D+ +LD+
Sbjct: 64 MSVQEALRLCPELALV------NGEDLTNYRHYSTKISEILHQFTPLVERLGFDDNFLDV 117
Query: 65 TDAAEAMLAETPPESLD----EVDEEALK--SHILGLESKDGNDSKATVKEWLCRCDADH 118
T E L LD + E LK S I G ++ C C
Sbjct: 118 TSIVEKQLKSQNDTELDMSNSSTEFEDLKELSKIFGPSEEE------------CPCGCHT 165
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
R L G I ++R ++ +E TCSAGIAHNK++AKLA +NKP QQT + S
Sbjct: 166 R---LIIGSKIAADIRNRIYEELHLTCSAGIAHNKLVAKLAGSLNKPNQQTLIFPCSGPL 222
Query: 179 LLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
LL ++ + K+ +G K T L + TV D+ + + L+ G + L + A G
Sbjct: 223 LLSTIGCVSKIPGVGQK-TTELLLSNNIRTVDDIRRIPLENLELKIGIDLARRLKDNAEG 281
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
I V+ +S G F +++ VA V+ L L L+E D
Sbjct: 282 IDETAVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 329
>gi|406601529|emb|CCH46835.1| N-acetyltransferase [Wickerhamomyces ciferrii]
Length = 657
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 46/340 (13%)
Query: 29 KADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAAEAMLAETPPE---SLDEVD 84
K L YR +++ I + E+AS+DE ++DL + E P+ ++ +D
Sbjct: 136 KVSLDPYRRESRKILKIFKSIVDLVEKASVDESFMDLGRLVIKRVFEMIPDLQKQIENLD 195
Query: 85 EEALKSHI---LGLE------SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRM 135
+ I LE + + + + +K+W D L+ G I E+R+
Sbjct: 196 SDGFLPLIPDGFTLEVTGDVITNEFDSTSLIIKDW--------DDLLMIIGGQITNEIRL 247
Query: 136 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 195
QV KE +T SAG+ K +AKLASG KP QT V +S+ L + +GGK
Sbjct: 248 QVQKELGYTLSAGVGRVKTIAKLASGFRKPDNQTIVRNNSINNFLKNFDFTDFWSMGGKT 307
Query: 196 GTSLQNELGVTTVGDLLKFSEDKLQESYGFN----------TGTWLWNIARGISGEEVQA 245
G ++ +L + D + F ++ +Y N + L+ + RG + + +
Sbjct: 308 GEFIKMKLS-PPLEDSIAF----IRNNYDLNELQDYLEDKELASKLYQLIRGEYMQSLSS 362
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN--KRIAHTLTLHA 303
R++ KS S K+ +++K++ W+ +L +RL ++N K T+++H
Sbjct: 363 RIILKSMNSNKNIRF-KSVKSLGDSIQWIKVFSADLYQRLIETNDENGYKTRPKTISIH- 420
Query: 304 SAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 343
F+S ++ ++ S PL I E LFQ G+
Sbjct: 421 --FRSINNFNQPHSKQSSLPL----VPIDELESVLFQYGV 454
>gi|194432752|ref|ZP_03065037.1| DNA polymerase IV [Shigella dysenteriae 1012]
gi|194419014|gb|EDX35098.1| DNA polymerase IV [Shigella dysenteriae 1012]
Length = 350
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 52 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 104
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 105 YLDVTDSVH------------------------------------------CHGSA---- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 119 ------TLIAQEIRQAIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 172
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + E+G+ T GD+ K L + +G G LW ++GI
Sbjct: 173 QTLPLAKIPGV-GKVSAAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 230
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|254574961|pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template
UT
Length = 389
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 54 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 107
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L+
Sbjct: 108 TEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV- 150
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 151 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 209
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 210 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 268
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 269 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 321
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 322 RRYSSEKHYGRE---SRQCPI 339
>gi|19568909|gb|AAL91966.1|AF483103_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|51247537|pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|51247538|pdb|1T3N|B Chain B, Structure Of The Catalytic Core Of Dna Polymerase Iota In
Complex With Dna And Dttp
gi|73535911|pdb|1ZET|A Chain A, X-Ray Data Do Not Support Hoogsteen Base-Pairing During
Replication By Human Polymerase Iota
Length = 388
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 53 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 106
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L+
Sbjct: 107 TEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV- 149
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 150 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 208
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 209 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 267
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 268 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 320
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 321 RRYSSEKHYGRE---SRQCPI 338
>gi|194904125|ref|XP_001981005.1| GG23702 [Drosophila erecta]
gi|190652708|gb|EDV49963.1| GG23702 [Drosophila erecta]
Length = 737
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 142/331 (42%), Gaps = 35/331 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EA+ +CP + LV DL+ YR + +L E+ DE Y+D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLTPYRQMSQRIFDLLLNYTPLVEKLGFDENYMDVTALV 123
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A V E LK + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEAQLKPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
+ E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 VAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 ITGIGQK-TQCLLLEAGMSSVEQLQQCDMDIMRKKFGFETATRLRDLAFGRDTSSVRPTG 285
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 308 SSDSDSRKK------FPSKSCPLRYGTAKIQ 332
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|449495749|ref|XP_004159933.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1032
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 111/287 (38%), Gaps = 69/287 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA---SID 58
V + M +AK +CP LV P D SY + IL + CE+ S D
Sbjct: 398 VKAGMFVRDAKALCPH--LVIFPY-----DFKSYEGVADQFYDILHK--HCEKVQAVSCD 448
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
E +LD++ + VD E L S I
Sbjct: 449 EAFLDISGT-------------NNVDPEVLASKI-------------------------- 469
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
R ++ T T SAGIA N ++A+LA+ KP Q +P V
Sbjct: 470 ---------------RKEIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDD 514
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L+ LPIK + +G L L+ V T L S+D LQ+ +G TG LWN +RG+
Sbjct: 515 YLNPLPIKDLPGIGHALEEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGV 573
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
V L+ +S G K Q +L LC+E+S RL
Sbjct: 574 DNRAVG--LIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRL 618
>gi|82407825|pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp
gi|254574964|pdb|3H4B|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Datp
gi|254574967|pdb|3H4D|A Chain A, Ternary Complex Of Human Dna Polymerase Iota With Template
UT AND Incoming Dgtp
Length = 390
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 140/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 55 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 108
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L+
Sbjct: 109 TEMVEKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV- 151
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 152 -GSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 210
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 211 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 269
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 270 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 322
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 323 RRYSSEKHYGRE---SRQCPI 340
>gi|194746257|ref|XP_001955597.1| GF18848 [Drosophila ananassae]
gi|190628634|gb|EDV44158.1| GF18848 [Drosophila ananassae]
Length = 732
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 35/335 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +EA+ +CP + LV DL+ YR ++ +L E+ DE ++D+
Sbjct: 66 MLIEEAQRLCPDLVLV------NGEDLAPYRQMSQKIFDLLLNYTPLVEKLGFDENFMDV 119
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T E A E ++ HI +DG A C C R LA
Sbjct: 120 TSLVELRQAHNA-----EAQQKPAVGHIY---PEDGTPLSA------CDCGCAQR---LA 162
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R ++ TC AGI++NK+LAKL +KP QQT + + + + L
Sbjct: 163 IGSRIAQEIREELKLRLGITCCAGISYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRDLG 222
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+K++ +G K L E G++TV L + D +++ +GF T T L ++A G V
Sbjct: 223 DLKRITGIGQK-TQCLLLEAGMSTVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTGLV 281
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ PK+ G S P +++T V+ L + L E++ D I L
Sbjct: 282 RPTGKPKTIGMEDSC-KPISVRT--DVEERFRMLLKRLVEQVSEDGRIPISIKVVLRKFD 338
Query: 304 SAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 332
S KSS ++++ F + CP G +K+Q
Sbjct: 339 SQKKSSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|124007421|ref|ZP_01692127.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
gi|123987077|gb|EAY26826.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
Length = 325
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ +I E++ ++ T+ T SAGI+ NK LAK+AS M+KP T + +
Sbjct: 115 MPSATIIAREIKQKIFDATQLTASAGISVNKFLAKVASDMDKPNGLTLISPEEAADFVAK 174
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPIKK +G +Q +LG+ T DL ++ + KL +G G + +NIA+GI
Sbjct: 175 LPIKKFHGIGKVTAKKMQ-QLGIFTGADLRRWDKAKLVRQFG-KVGNYYFNIAQGIDQRS 232
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V + KS + +F L ++ ++ L+QL EEL R +E+ K T+TL
Sbjct: 233 VNPHRIRKSISTENTF--DHDLASLEEMETALHQLAEELMRR----MEKTKSFGQTITL 285
>gi|424150956|ref|ZP_17882245.1| DNA polymerase IV [Escherichia coli PA24]
gi|424535976|ref|ZP_17979270.1| DNA polymerase IV [Escherichia coli EC4013]
gi|390734600|gb|EIO06094.1| DNA polymerase IV [Escherichia coli PA24]
gi|390877299|gb|EIP38236.1| DNA polymerase IV [Escherichia coli EC4013]
Length = 351
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ V + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------VEDIHHWSE--CEAIIERLYPELERR 273
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 68/307 (22%)
Query: 19 ELVQVPVA------RGKADLSSY--RNAG--SEVVSILARKG---------RCERA---- 55
EL +PVA RG +SY R G S + S +A+K R +R
Sbjct: 29 ELRGIPVAVGGSEKRGVVAAASYEARKYGVKSAMSSYIAKKKCPELIFVKPRFDRYKEIS 88
Query: 56 -SIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRC 114
SI +++ D TD E P SLDE +++ +K GN S +
Sbjct: 89 ESIQKIFYDYTDLVE-------PLSLDE-------AYLDVTYNKKGNPSASE-------- 126
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
I E+R ++ T T SAGI+ NK +AK+AS NKP Q TV
Sbjct: 127 --------------IAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPK 172
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
V+ L++L I+K + GK+ T LG+ T DL S + L+ +G N+G+ + I
Sbjct: 173 EVESFLEALDIRKFYGI-GKVTTEKMYLLGIFTGKDLKTKSREFLEYHFG-NSGSHYYQI 230
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
RG V+ +PKS G+ +F L+ ++S + +L + + +S+ L + L++NK
Sbjct: 231 VRGFHNSPVKPERIPKSVGAEHTF-----LENLSS-EVFLKERLDNISQELETRLKKNKL 284
Query: 295 IAHTLTL 301
T+TL
Sbjct: 285 AGKTITL 291
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 131/305 (42%), Gaps = 64/305 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 44 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFYEYTDL------VEPLSLDEAY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 98 LDVTV------------------------------NKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ET T SAGI+ NK +AK+AS +KP QTT+ + V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFNETGLTASAGISINKFIAKIASDYHKPNGQTTITQAEVQDFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S L+ ++G N+G + + ++RGI
Sbjct: 166 KLDVRKFYGI-GKVTAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F L + ++ L ++ E++ RL K I TL +
Sbjct: 224 EVQPFRIRKSVGAEETF--AENLTSEVYMERELERIAEDVVRRLKKQQVAGKTI--TLKI 279
Query: 302 HASAF 306
S F
Sbjct: 280 KYSDF 284
>gi|424817372|ref|ZP_18242523.1| DNA polymerase IV [Escherichia fergusonii ECD227]
gi|325498392|gb|EGC96251.1| DNA polymerase IV [Escherichia fergusonii ECD227]
Length = 351
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPTEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057958|gb|AAR98936.1| SOS inducible DNA polymerase, partial [Shigella flexneri 5a str.
M90T]
Length = 324
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|41057948|gb|AAR98931.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 72/287 (25%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-----ERASID 58
S+M A+ +CPQ V + + +YR A +V+ IL RC E S+D
Sbjct: 66 SAMTAARARSLCPQAVFV-------RPRMDAYREASRQVMGIL----RCYTPLVEPLSLD 114
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
E +LD+T A + DG
Sbjct: 115 EAFLDVTAA-----------------------------TADG------------------ 127
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP
Sbjct: 128 -----VLAVRIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLA 182
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L LP+ K+ +G L + +G+ TV DL S + L +G G W + +ARGI
Sbjct: 183 FLAPLPVGKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFG-KAGLWFYEVARGI 240
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
VQ KS G ++F P+ L+ + L Q+ ++S RL
Sbjct: 241 DSRPVQTSRQRKSVGYERTF--PQNLEDPKVMLSTLRQMAGQVSARL 285
>gi|422804340|ref|ZP_16852772.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
gi|324114892|gb|EGC08858.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
Length = 351
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432356608|ref|ZP_19599855.1| DNA polymerase IV [Escherichia coli KTE4]
gi|430879418|gb|ELC02749.1| DNA polymerase IV [Escherichia coli KTE4]
Length = 351
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPSV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|296222687|ref|XP_002757293.1| PREDICTED: DNA polymerase iota isoform 1 [Callithrix jacchus]
Length = 738
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 134/316 (42%), Gaps = 37/316 (11%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 69
AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+ E
Sbjct: 107 AKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVE 160
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
L + + L V + H+ +S + +D L G I
Sbjct: 161 KRLQQLQSDELSAV---TVLGHVYNNQSINLHDILHI---------------RLLVGSQI 202
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKM 188
E+R + T AG+A NK+LAKLASG+ KP QQT + S + L+ SL IK++
Sbjct: 203 AAEMREAMYNRLGLTGCAGVASNKLLAKLASGVFKPNQQTVLLPESCQHLIHSLNHIKEI 262
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 263 PGIGCKTTKCLE-ALGINSVHDLQTFSSKILEKELGISVAQRILKLSFGEDNSPVIPSGP 321
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
P+S SF + + + + +L L R+C D R HT+ L + S
Sbjct: 322 PQSFSEEDSF---KKCSSEVEAKKRIEELLASLLNRVCRD----GRKPHTVRLIIRRYSS 374
Query: 309 SDSDSRKKFPSKSCPL 324
R+ S+ C +
Sbjct: 375 GKHHGRE---SRQCSI 387
>gi|19568893|gb|AAL91958.1|AF483095_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|19568905|gb|AAL91964.1|AF483101_1 DNA polymerase DinB [Escherichia coli]
gi|19568911|gb|AAL91967.1|AF483104_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|432439586|ref|ZP_19681949.1| DNA polymerase IV [Escherichia coli KTE189]
gi|432444710|ref|ZP_19687019.1| DNA polymerase IV [Escherichia coli KTE191]
gi|433012430|ref|ZP_20200815.1| DNA polymerase IV [Escherichia coli KTE104]
gi|433021974|ref|ZP_20210004.1| DNA polymerase IV [Escherichia coli KTE106]
gi|433325955|ref|ZP_20402923.1| DNA polymerase IV [Escherichia coli J96]
gi|430969396|gb|ELC86500.1| DNA polymerase IV [Escherichia coli KTE189]
gi|430976085|gb|ELC92960.1| DNA polymerase IV [Escherichia coli KTE191]
gi|431536262|gb|ELI12591.1| DNA polymerase IV [Escherichia coli KTE104]
gi|431541300|gb|ELI16740.1| DNA polymerase IV [Escherichia coli KTE106]
gi|432345767|gb|ELL40260.1| DNA polymerase IV [Escherichia coli J96]
Length = 351
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|307180994|gb|EFN68768.1| DNA polymerase iota [Camponotus floridanus]
Length = 549
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 130/286 (45%), Gaps = 24/286 (8%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA +CP++ LV DL+SYR ++V IL + ER D+ +L++
Sbjct: 36 MSVQEALRLCPELVLV------NGEDLTSYRLYSTKVFEILQQFTPLVERLGFDDYFLEI 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT-VKEWLCRCDADHRDKLL 123
+ + ++ D E +++ E +DSK + C CD R L
Sbjct: 90 KSVEKQLKSQN--------DSEFDMNNLHTDEELKESDSKIFGPSDEECPCDCHTR---L 138
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
G I +R ++ +E TCSAGIAHNK+LAKLA +NKP QQT V S LL ++
Sbjct: 139 MIGAKIAAGIRNRIYEELHLTCSAGIAHNKLLAKLAGSLNKPNQQTLVFPCSGPMLLSAI 198
Query: 184 -PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
I K+ +G K L + + TV D+ K + L+ G + L + A GI
Sbjct: 199 GSISKIPGVGQKTMELLLSN-NIKTVDDVRKIPLENLELKIGVDLARRLKDNAEGIDETV 257
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
V+ +S G F +++ VA V+ L L L+E D
Sbjct: 258 VKPSGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED 300
>gi|41057946|gb|AAR98930.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP++++V D +Y A + S IL+ G + SIDE +D+
Sbjct: 429 MKG--ALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDI 479
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T LE+ G+D + + L R A +
Sbjct: 480 TTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE---- 508
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I ELR V KET S GI N +LAK+A KPA Q + +V + +L
Sbjct: 509 ----IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLT 564
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV
Sbjct: 565 VQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVG 623
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 624 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|41057938|gb|AAR98926.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057940|gb|AAR98927.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057956|gb|AAR98935.1| SOS inducible DNA polymerase, partial [Shigella sonnei]
Length = 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP++++V D +Y A + S IL+ G + SIDE +D+
Sbjct: 429 MKG--ALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDI 479
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T LE+ G+D + + L R A +
Sbjct: 480 TTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE---- 508
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I ELR V KET S GI N +LAK+A KPA Q + +V + +L
Sbjct: 509 ----IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLT 564
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV
Sbjct: 565 VQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVG 623
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 624 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M G A+++CP + V K + YR +++ S+ E S+DE
Sbjct: 57 VRSAMAGALARKLCPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G S + W+ +C
Sbjct: 110 YLDVT------------------------------ENKVGMPSATVIASWIRQC------ 133
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ ++T SAGI+ NK +AK+AS +NKP Q T+P V L
Sbjct: 134 ----------------IKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L IKK +G K + G+ T DL S++ L +++G +G + ++I RGI
Sbjct: 178 EELDIKKFYGIGKKTAEKMYLH-GIFTGMDLKLKSKEYLSDNFG-KSGAYYYDIVRGIQH 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ + KS + ++F + + S L +L E ++E + LE++K T+T
Sbjct: 236 SEVKPNRIRKSLAAERTFR-----ENITSEIFMLEKL-EHIAEEVERRLEKSKVAGKTIT 289
Query: 301 L 301
L
Sbjct: 290 L 290
>gi|41057944|gb|AAR98929.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|19568865|gb|AAL91944.1|AF483081_1 DNA polymerase DinB [Escherichia coli]
gi|19568869|gb|AAL91946.1|AF483083_1 DNA polymerase DinB [Escherichia coli]
gi|19568871|gb|AAL91947.1|AF483084_1 DNA polymerase DinB [Escherichia coli]
gi|19568873|gb|AAL91948.1|AF483085_1 DNA polymerase DinB [Escherichia coli]
gi|19568875|gb|AAL91949.1|AF483086_1 DNA polymerase DinB [Escherichia coli]
gi|19568877|gb|AAL91950.1|AF483087_1 DNA polymerase DinB [Escherichia coli]
gi|19568879|gb|AAL91951.1|AF483088_1 DNA polymerase DinB [Escherichia coli]
gi|19568881|gb|AAL91952.1|AF483089_1 DNA polymerase DinB [Escherichia coli]
gi|19568889|gb|AAL91956.1|AF483093_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 143/322 (44%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+ +CP + V K Y+ S++ RA ++
Sbjct: 58 VRSAISGVKARRLCPDLIFV-------KPRFDRYKEISSKI-----------RA----IF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE +++ E+K GN S +
Sbjct: 96 YDYTDLVE-------PLSLDE-------AYLDVTENKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V G L+
Sbjct: 126 ------LIAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLGFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ + G+ T DL S + L++++G +G++ + I RGI
Sbjct: 180 ALDIRKFYGI-GKVTAEKMYQKGIFTGTDLKSKSLEFLEQNFG-KSGSYYYYIVRGIHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS + ++F L + + L + EE+S+RL ++K T+TL
Sbjct: 238 EVKPNRIRKSLAAERTF--SENLSSEIFMLEKLEHIAEEVSKRLI----RSKVAGKTVTL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD + SK+ P
Sbjct: 292 -----KIKYSDFTLQTRSKTLP 308
>gi|422373049|ref|ZP_16453380.1| DNA polymerase IV [Escherichia coli MS 60-1]
gi|324015566|gb|EGB84785.1| DNA polymerase IV [Escherichia coli MS 60-1]
Length = 351
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 146/322 (45%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G AK+ CP+I V+ R K ++S+ I E++
Sbjct: 58 VRSAISGVLAKKYCPEIIFVRPRFDRYK-EIST---------------------KIHEIF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE +++ ++K GN S +
Sbjct: 96 HEYTDMVE-------PLSLDE-------AYLDVTQNKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L+ E+R+++ E T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 126 ------LLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDEVIPFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LPI+K + GK+ T +LG+ T DL S + L++ +G +G + +N+ RGI
Sbjct: 180 ELPIRKFYGV-GKVTTEKMYQLGIFTGLDLKSKSVEFLEKHFG-KSGGFYFNVVRGIHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+A + KS + +F ++S L QL E+++ L L++ + T+TL
Sbjct: 238 EVKASRITKSVAAEHTFD-----VNLSSEIFMLEQL-EKIAVSLEKRLKKYNILGKTVTL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD ++ SK+ P
Sbjct: 292 -----KIKYSDFTQQTRSKTLP 308
>gi|19568883|gb|AAL91953.1|AF483090_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP++++V D +Y A + S IL+ G + SIDE +D+
Sbjct: 429 MKG--ALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDI 479
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T LE+ G+D + + L R A +
Sbjct: 480 TTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE---- 508
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I ELR V KET S GI N +LAK+A KPA Q + +V + +L
Sbjct: 509 ----IADELRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLT 564
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LGT L++ LGV V D+ + D+L S G TG +W ARGI EV
Sbjct: 565 VQDLPGVGYSLGTKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVG 623
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 624 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|300929520|ref|ZP_07144986.1| DNA polymerase IV, partial [Escherichia coli MS 187-1]
gi|300462519|gb|EFK26012.1| DNA polymerase IV [Escherichia coli MS 187-1]
Length = 328
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|70955242|gb|AAZ16247.1| DNA polymerase iota [Xenopus (Silurana) tropicalis]
Length = 742
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 37/325 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M +A+E CPQ+ LV DL+ YR +L + ER DE
Sbjct: 97 VTKLMLIKDAREKCPQLVLV------SGEDLTPYREMSYRATELLEEFSPQVERLGFDEN 150
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
Y+D+T+ + L EE G+ +D K V W A R
Sbjct: 151 YIDVTELVDKKL-----------QEERGNGRNPGVCGHVYSDQKMNVNNW-----AHVR- 193
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+A G I +E+R + T AG A NK+LAKL SG +KP QQT + S L+
Sbjct: 194 --IAAGSHIASEIRAALYNRLGLTGCAGTASNKLLAKLVSGTHKPNQQTALLHESHSHLI 251
Query: 181 DSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+SL +K++ +G K L++ LG++ + DL L++ +G + + ++RG
Sbjct: 252 NSLDHVKQIPGIGYKTSKRLES-LGLSRISDLQACPITLLEKEFGSSVAHRIQMLSRGED 310
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V P+S SF + TV+ V+ + + L R+ D RI HTL
Sbjct: 311 DSAVVPSGPPQSISDEDSF---KKCSTVSEVKIKMEERLRNLLVRISKD----GRIPHTL 363
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPL 324
L F S+ ++ S+ CP+
Sbjct: 364 RLTIRQFSPSNKWFNRE--SRQCPI 386
>gi|195330788|ref|XP_002032085.1| GM23708 [Drosophila sechellia]
gi|194121028|gb|EDW43071.1| GM23708 [Drosophila sechellia]
Length = 735
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 142/331 (42%), Gaps = 35/331 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A V E L+ + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEALLRPPVGHTYPADGTPLST------CDCGCAQR---LAIGTR 166
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 ITGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSSVRPSG 285
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 308 SSDSDSRKK------FPSKSCPLRYGTAKIQ 332
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|41057950|gb|AAR98932.1| SOS inducible DNA polymerase, partial [Shigella flexneri]
Length = 322
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 44 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 98 LDVT------------------------------VNKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI
Sbjct: 166 RLDVRKFYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 224 EVQPFRIRKSVGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+RM++L+ T T SAGI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 121 LIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 181 FFGIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 239 TIKSVGTERTF--DENLSSEVFIETKLDMLVEELSLRL 274
>gi|366090384|ref|ZP_09456750.1| DNA polymerase IV [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
++ ++ + TCSAGI++NK LAKLAS KP T V V+ L L I+K + +G
Sbjct: 131 IQQEIFTKVHLTCSAGISYNKFLAKLASDYRKPVGITLVRQDEVQDFLFPLAIEKFRGVG 190
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
K + ++LGV T DL + S +L +G G L+ RGI V+ + + KS
Sbjct: 191 KKTVPKM-HQLGVFTGKDLYQLSSGELISHFG-KMGYILYQRVRGIDERPVEWQRIRKSL 248
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
G+ ++F P L TVASV+++L ++ ++RL +L+Q ++ TL +
Sbjct: 249 GNERTFDRP--LTTVASVENFL----QKSAKRLADELDQQQKHGKTLVI 291
>gi|41057952|gb|AAR98933.1| SOS inducible DNA polymerase, partial [Shigella dysenteriae]
Length = 324
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 73/323 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 60
V S+M G +A +CP++ V+ R Y+ ++ +I L E S+DE
Sbjct: 57 VRSAMSGVQAARLCPELTFVRPRFDR-------YKEISKQIRAIFLEYTDLVEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S
Sbjct: 110 YLDVT------------------------------ENKKGNPS----------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ ++T T SAGI+ NK +AK+AS NKP Q TV V+ +
Sbjct: 123 -----ATLIAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFI 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L +KK + GK+ +LG+ T DL + + L++ +G N+G +N++RGIS
Sbjct: 178 EVLDVKKFYGI-GKVTAEKMYQLGIYTGLDLKNKTLEYLEQHFG-NSGQAFYNLSRGISY 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
+V+ KS G+ ++F L + ++ L + E+ R +++ K T+T
Sbjct: 236 SQVKPNRQMKSIGAERTF--NENLSSEIYMEERLENIASEIERR----IKKYKISGKTIT 289
Query: 301 LHASAFKSSDSDSRKKFPSKSCP 323
L K SD ++ SK+ P
Sbjct: 290 L-----KIKYSDFTQQTRSKTLP 307
>gi|110804358|ref|YP_687878.1| DNA polymerase IV [Shigella flexneri 5 str. 8401]
gi|424836826|ref|ZP_18261463.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
gi|110613906|gb|ABF02573.1| damage-inducible protein P [Shigella flexneri 5 str. 8401]
gi|383465878|gb|EID60899.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
Length = 334
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 36 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 88
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 89 YLDVTDSVH------------------------------------------CHGSA---- 102
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 103 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 156
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 157 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 214
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 215 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 256
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 126/304 (41%), Gaps = 74/304 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + KE TCSAG+++NK LAKLAS KP T + + L
Sbjct: 132 -----AIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 187 KKLPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAH 297
V++ + KS GS +++ + + + + E+S +R+ L++N ++
Sbjct: 245 SPVKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGR 295
Query: 298 TLTL 301
T+ L
Sbjct: 296 TIVL 299
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+ +CP + V K Y+ ++ RA DE Y
Sbjct: 44 VRSAISGAQARRLCPHLIFV-------KPRFERYKQISMQI-----------RAIFDE-Y 84
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
DL + P SLDE +++ +K GN S
Sbjct: 85 TDLVE----------PLSLDE-------AYLDVTVNKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ E T SAGI+ NK +AK+AS +KP QTT+ + V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTITQAEVQDFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S L+ ++G N+G + + ++RGI
Sbjct: 166 KLDVRKFYGI-GKVTAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F A + V ++ + E ++E + LE+ + T+TL
Sbjct: 224 EVQPFRIRKSVGAEETF----AENLTSEV--YMERELERIAEDVVRRLEKQQVAGKTITL 277
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPNRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>gi|432858656|ref|ZP_20085059.1| DNA polymerase IV [Escherichia coli KTE146]
gi|431408412|gb|ELG91598.1| DNA polymerase IV [Escherichia coli KTE146]
Length = 351
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568887|gb|AAL91955.1|AF483092_1 DNA polymerase DinB [Escherichia coli]
Length = 331
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 42 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 94
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 95 YLDVTDSVH------------------------------------------CHGSA---- 108
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 109 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 162
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 163 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 220
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 134/293 (45%), Gaps = 62/293 (21%)
Query: 27 RGKADLSSY-------RNAGSEVVS------ILARKGRCER-----ASIDEVYLDLTDAA 68
RG +SY R+A S V++ ++ K R ER I E++ + TD
Sbjct: 40 RGVVSAASYEARKFGVRSAMSSVIAKRNCPDLIFVKPRFERYKEISGQIREIFFEYTDLV 99
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E P SLDE +++ E+K GN S L
Sbjct: 100 E-------PLSLDE-------AYLDVTENKKGNPS----------------------ATL 123
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I ++R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K
Sbjct: 124 IAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEEVIAFLEELDIRKF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK+ LG+ T DL SE+ L E +G +GT +N+ RGI EV+ +
Sbjct: 184 YGV-GKVTAEKMYRLGIFTGKDLKLKSEEYLTEHFG-KSGTHFYNVVRGIHLSEVKPHRI 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ ++F + ++S L +L E ++E + L ++K T+TL
Sbjct: 242 RKSLGAERTFN-----ENISSEIFMLERL-ENIAEEIERRLTKSKVAGKTITL 288
>gi|19568867|gb|AAL91945.1|AF483082_1 DNA polymerase DinB [Escherichia coli]
Length = 295
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 6 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 58
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 59 YLDVTDSVH------------------------------------------CHGSA---- 72
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 73 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 126
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 127 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 184
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 185 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 226
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 126/306 (41%), Gaps = 74/306 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 82 VHSAMSSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEA 134
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 135 YLDVTENK------------------------LGIKS----------------------- 147
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + KE TCSAG+++NK LAKLAS KP T + + L
Sbjct: 148 -----AIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFL 202
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 203 KKLPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISN 260
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAH 297
V++ + KS GS +++ + + + + E+S +R+ L++N ++
Sbjct: 261 SPVKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGR 311
Query: 298 TLTLHA 303
T+ L
Sbjct: 312 TIVLKV 317
>gi|380025132|ref|XP_003696333.1| PREDICTED: DNA polymerase iota-like [Apis florea]
Length = 566
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 142/324 (43%), Gaps = 35/324 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA +CP + LV DL++YR+ ++++ IL + ER D+ ++D+
Sbjct: 65 MSVQEALRLCPGLALV------NGEDLTNYRHFSAKILEILHQFTPLVERLGFDDNFMDV 118
Query: 65 TDAAEAMLAETPPESLD---EVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
T + + L+ +++E I G + +E C C A
Sbjct: 119 TSIVQKYMNSGNNSELNINISMEDENPVGEIFG----------TSEEECPCGCHAR---- 164
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QQT + S LL
Sbjct: 165 -LIIASKIAAEIRERIYKDLHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCSAPMLLS 223
Query: 182 SL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++ I K+ +G K T L + T+ DL K + L+ G + L + A GI
Sbjct: 224 NIGSISKIPGVGQK-TTQLLMSNNIKTIDDLRKTPLETLEMKIGIDLARKLKDNAEGIDE 282
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ +S G F +++ VA V+ L L L+E D +A LT
Sbjct: 283 TVVKPTGKKQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPVAMRLT 337
Query: 301 LHASAFKSSDSDSRKKFPSKSCPL 324
+ F S S R+ ++ C L
Sbjct: 338 VRKHDFNKSSSGKRE---TRQCAL 358
>gi|91209319|ref|YP_539305.1| DNA polymerase IV [Escherichia coli UTI89]
gi|110640467|ref|YP_668195.1| DNA polymerase IV [Escherichia coli 536]
gi|117622533|ref|YP_851446.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|191171433|ref|ZP_03032982.1| DNA polymerase IV [Escherichia coli F11]
gi|218557187|ref|YP_002390100.1| DNA polymerase IV [Escherichia coli S88]
gi|237707750|ref|ZP_04538231.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|331645437|ref|ZP_08346541.1| DNA polymerase IV [Escherichia coli M605]
gi|386597994|ref|YP_006099500.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|386605783|ref|YP_006112083.1| DNA polymerase IV [Escherichia coli UM146]
gi|416334115|ref|ZP_11671134.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|417082657|ref|ZP_11950885.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|417287701|ref|ZP_12074987.1| DNA polymerase IV [Escherichia coli TW07793]
gi|417660855|ref|ZP_12310436.1| DNA polymerase 4 [Escherichia coli AA86]
gi|419915704|ref|ZP_14434064.1| DNA polymerase IV [Escherichia coli KD1]
gi|419945739|ref|ZP_14462174.1| DNA polymerase IV [Escherichia coli HM605]
gi|422358413|ref|ZP_16439072.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|422748672|ref|ZP_16802585.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|422752926|ref|ZP_16806753.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|422838798|ref|ZP_16886770.1| DNA polymerase IV [Escherichia coli H397]
gi|425298462|ref|ZP_18688512.1| DNA polymerase IV [Escherichia coli 07798]
gi|432361031|ref|ZP_19604228.1| DNA polymerase IV [Escherichia coli KTE5]
gi|432405138|ref|ZP_19647861.1| DNA polymerase IV [Escherichia coli KTE28]
gi|432464294|ref|ZP_19706402.1| DNA polymerase IV [Escherichia coli KTE205]
gi|432469580|ref|ZP_19711635.1| DNA polymerase IV [Escherichia coli KTE206]
gi|432572272|ref|ZP_19808764.1| DNA polymerase IV [Escherichia coli KTE55]
gi|432582388|ref|ZP_19818798.1| DNA polymerase IV [Escherichia coli KTE57]
gi|432586577|ref|ZP_19822949.1| DNA polymerase IV [Escherichia coli KTE58]
gi|432596147|ref|ZP_19832436.1| DNA polymerase IV [Escherichia coli KTE62]
gi|432711936|ref|ZP_19946988.1| DNA polymerase IV [Escherichia coli KTE8]
gi|432753075|ref|ZP_19987644.1| DNA polymerase IV [Escherichia coli KTE22]
gi|432777132|ref|ZP_20011386.1| DNA polymerase IV [Escherichia coli KTE59]
gi|432785925|ref|ZP_20020093.1| DNA polymerase IV [Escherichia coli KTE65]
gi|432800550|ref|ZP_20034541.1| DNA polymerase IV [Escherichia coli KTE84]
gi|432819598|ref|ZP_20053312.1| DNA polymerase IV [Escherichia coli KTE118]
gi|432825726|ref|ZP_20059383.1| DNA polymerase IV [Escherichia coli KTE123]
gi|432892907|ref|ZP_20105012.1| DNA polymerase IV [Escherichia coli KTE165]
gi|433003791|ref|ZP_20192229.1| DNA polymerase IV [Escherichia coli KTE227]
gi|433010996|ref|ZP_20199401.1| DNA polymerase IV [Escherichia coli KTE229]
gi|433071227|ref|ZP_20257936.1| DNA polymerase IV [Escherichia coli KTE129]
gi|433076410|ref|ZP_20262986.1| DNA polymerase IV [Escherichia coli KTE131]
gi|433118779|ref|ZP_20304496.1| DNA polymerase IV [Escherichia coli KTE157]
gi|433152409|ref|ZP_20337379.1| DNA polymerase IV [Escherichia coli KTE176]
gi|433162032|ref|ZP_20346800.1| DNA polymerase IV [Escherichia coli KTE179]
gi|433166968|ref|ZP_20351652.1| DNA polymerase IV [Escherichia coli KTE180]
gi|433181738|ref|ZP_20366046.1| DNA polymerase IV [Escherichia coli KTE85]
gi|122424895|sp|Q1RFU0.1|DPO4_ECOUT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122958567|sp|Q0TL85.1|DPO4_ECOL5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027664|sp|A1A7U2.1|DPO4_ECOK1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|91070893|gb|ABE05774.1| damage-inducible protein P; DNA polymerase IV [Escherichia coli
UTI89]
gi|110342059|gb|ABG68296.1| DNA-damage-inducible protein P (DinP) [Escherichia coli 536]
gi|115511657|gb|ABI99731.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|190908367|gb|EDV67957.1| DNA polymerase IV [Escherichia coli F11]
gi|218363956|emb|CAR01621.1| DNA polymerase IV [Escherichia coli S88]
gi|226898960|gb|EEH85219.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|294491183|gb|ADE89939.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|307628267|gb|ADN72571.1| DNA polymerase IV [Escherichia coli UM146]
gi|315287741|gb|EFU47144.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|320197284|gb|EFW71900.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|323953127|gb|EGB48995.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|323958691|gb|EGB54392.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|330910073|gb|EGH38583.1| DNA polymerase 4 [Escherichia coli AA86]
gi|331045599|gb|EGI17725.1| DNA polymerase IV [Escherichia coli M605]
gi|355353195|gb|EHG02365.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|371611722|gb|EHO00242.1| DNA polymerase IV [Escherichia coli H397]
gi|386248486|gb|EII94658.1| DNA polymerase IV [Escherichia coli TW07793]
gi|388383451|gb|EIL45222.1| DNA polymerase IV [Escherichia coli KD1]
gi|388414873|gb|EIL74817.1| DNA polymerase IV [Escherichia coli HM605]
gi|408221465|gb|EKI45398.1| DNA polymerase IV [Escherichia coli 07798]
gi|430891266|gb|ELC13802.1| DNA polymerase IV [Escherichia coli KTE5]
gi|430932634|gb|ELC53053.1| DNA polymerase IV [Escherichia coli KTE28]
gi|430997045|gb|ELD13312.1| DNA polymerase IV [Escherichia coli KTE205]
gi|431000294|gb|ELD16356.1| DNA polymerase IV [Escherichia coli KTE206]
gi|431111366|gb|ELE15270.1| DNA polymerase IV [Escherichia coli KTE55]
gi|431119404|gb|ELE22403.1| DNA polymerase IV [Escherichia coli KTE57]
gi|431123857|gb|ELE26511.1| DNA polymerase IV [Escherichia coli KTE58]
gi|431133814|gb|ELE35780.1| DNA polymerase IV [Escherichia coli KTE62]
gi|431259451|gb|ELF51814.1| DNA polymerase IV [Escherichia coli KTE8]
gi|431305856|gb|ELF94173.1| DNA polymerase IV [Escherichia coli KTE22]
gi|431330706|gb|ELG17970.1| DNA polymerase IV [Escherichia coli KTE59]
gi|431341856|gb|ELG28852.1| DNA polymerase IV [Escherichia coli KTE65]
gi|431351446|gb|ELG38233.1| DNA polymerase IV [Escherichia coli KTE84]
gi|431370600|gb|ELG56393.1| DNA polymerase IV [Escherichia coli KTE118]
gi|431375110|gb|ELG60454.1| DNA polymerase IV [Escherichia coli KTE123]
gi|431425359|gb|ELH07429.1| DNA polymerase IV [Escherichia coli KTE165]
gi|431517112|gb|ELH94634.1| DNA polymerase IV [Escherichia coli KTE227]
gi|431519208|gb|ELH96660.1| DNA polymerase IV [Escherichia coli KTE229]
gi|431594676|gb|ELI64955.1| DNA polymerase IV [Escherichia coli KTE129]
gi|431602470|gb|ELI71903.1| DNA polymerase IV [Escherichia coli KTE131]
gi|431649763|gb|ELJ17105.1| DNA polymerase IV [Escherichia coli KTE157]
gi|431678465|gb|ELJ44461.1| DNA polymerase IV [Escherichia coli KTE176]
gi|431692822|gb|ELJ58245.1| DNA polymerase IV [Escherichia coli KTE179]
gi|431694762|gb|ELJ60107.1| DNA polymerase IV [Escherichia coli KTE180]
gi|431712483|gb|ELJ76777.1| DNA polymerase IV [Escherichia coli KTE85]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +A+++CP + V+ R K R E + E S+DE Y
Sbjct: 44 VRSAISGAQARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDL------VEPLSLDEAY 97
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T +K GN S
Sbjct: 98 LDVT------------------------------VNKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD
Sbjct: 110 ----ATLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLD 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K + GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI
Sbjct: 166 RLDVRKFYGI-GKVTAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EVQ + KS G+ ++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 224 EVQPFRIRKSVGAEETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|19568901|gb|AAL91962.1|AF483099_1 DNA polymerase DinB [Escherichia coli]
gi|19568903|gb|AAL91963.1|AF483100_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|293408387|ref|ZP_06652226.1| DNA polymerase IV [Escherichia coli B354]
gi|291471565|gb|EFF14048.1| DNA polymerase IV [Escherichia coli B354]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432379911|ref|ZP_19622875.1| DNA polymerase IV [Escherichia coli KTE15]
gi|432385678|ref|ZP_19628579.1| DNA polymerase IV [Escherichia coli KTE16]
gi|432512492|ref|ZP_19749736.1| DNA polymerase IV [Escherichia coli KTE224]
gi|432609957|ref|ZP_19846131.1| DNA polymerase IV [Escherichia coli KTE72]
gi|432644660|ref|ZP_19880465.1| DNA polymerase IV [Escherichia coli KTE86]
gi|432654294|ref|ZP_19890014.1| DNA polymerase IV [Escherichia coli KTE93]
gi|432697601|ref|ZP_19932774.1| DNA polymerase IV [Escherichia coli KTE169]
gi|432744220|ref|ZP_19978926.1| DNA polymerase IV [Escherichia coli KTE43]
gi|432902591|ref|ZP_20112298.1| DNA polymerase IV [Escherichia coli KTE194]
gi|432942026|ref|ZP_20139442.1| DNA polymerase IV [Escherichia coli KTE183]
gi|432983976|ref|ZP_20172716.1| DNA polymerase IV [Escherichia coli KTE215]
gi|433037183|ref|ZP_20224807.1| DNA polymerase IV [Escherichia coli KTE113]
gi|433099795|ref|ZP_20285912.1| DNA polymerase IV [Escherichia coli KTE145]
gi|433142794|ref|ZP_20327977.1| DNA polymerase IV [Escherichia coli KTE168]
gi|433186970|ref|ZP_20371107.1| DNA polymerase IV [Escherichia coli KTE88]
gi|430910511|gb|ELC31821.1| DNA polymerase IV [Escherichia coli KTE16]
gi|430911890|gb|ELC33141.1| DNA polymerase IV [Escherichia coli KTE15]
gi|431045079|gb|ELD55328.1| DNA polymerase IV [Escherichia coli KTE224]
gi|431151780|gb|ELE52791.1| DNA polymerase IV [Escherichia coli KTE72]
gi|431184873|gb|ELE84616.1| DNA polymerase IV [Escherichia coli KTE86]
gi|431195720|gb|ELE94684.1| DNA polymerase IV [Escherichia coli KTE93]
gi|431247268|gb|ELF41506.1| DNA polymerase IV [Escherichia coli KTE169]
gi|431296065|gb|ELF85793.1| DNA polymerase IV [Escherichia coli KTE43]
gi|431437832|gb|ELH19339.1| DNA polymerase IV [Escherichia coli KTE194]
gi|431456001|gb|ELH36350.1| DNA polymerase IV [Escherichia coli KTE183]
gi|431506412|gb|ELH85008.1| DNA polymerase IV [Escherichia coli KTE215]
gi|431556226|gb|ELI30015.1| DNA polymerase IV [Escherichia coli KTE113]
gi|431623391|gb|ELI92062.1| DNA polymerase IV [Escherichia coli KTE145]
gi|431667270|gb|ELJ33860.1| DNA polymerase IV [Escherichia coli KTE168]
gi|431710438|gb|ELJ74814.1| DNA polymerase IV [Escherichia coli KTE88]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|373856739|ref|ZP_09599483.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
gi|372453718|gb|EHP27185.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
Length = 433
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 123/293 (41%), Gaps = 67/293 (22%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYLDLTDAA 68
+AK++CPQI + R K + YR A + + IL R + E SIDE Y+D+TD+
Sbjct: 70 QAKKLCPQI------IVR-KPNFDRYRAASTSMFDILRRYSQLVEPVSIDEGYMDITDSY 122
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E ES+ EV
Sbjct: 123 ELGSPLQIAESIQEV--------------------------------------------- 137
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+LKE + CS GIA NK LAK+AS M KP T + + +L + +M
Sbjct: 138 --------LLKELDIPCSIGIAPNKFLAKMASDMKKPLGITILRKRDISSVLWPMEAGEM 189
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L LG+ T+GDL K ++ +L+ G N G L + A G+ V
Sbjct: 190 HGVGKKTAEKLA-PLGILTIGDLAKANDIQLKALLGIN-GLRLKDRANGVDKRTVN---- 243
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
P+S KS L S QH L Q+ E L E++ L++ K +A T+++
Sbjct: 244 PESVYDFKSIGNSTTLAKDVSNQHLLFQVIEGLVEKVTQRLKRKKVLAQTISV 296
>gi|419298502|ref|ZP_13840520.1| DNA polymerase IV [Escherichia coli DEC11C]
gi|378157078|gb|EHX18120.1| DNA polymerase IV [Escherichia coli DEC11C]
Length = 357
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 59 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 111
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 112 YLDVTDSVH------------------------------------------CHGSA---- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 126 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 179
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 180 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 237
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 238 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 279
>gi|218688123|ref|YP_002396335.1| DNA polymerase IV [Escherichia coli ED1a]
gi|218698823|ref|YP_002406452.1| DNA polymerase IV [Escherichia coli IAI39]
gi|222155074|ref|YP_002555213.1| DNA polymerase IV [Escherichia coli LF82]
gi|386622636|ref|YP_006142364.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|387615594|ref|YP_006118616.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|422831010|ref|ZP_16879161.1| DNA polymerase IV [Escherichia coli B093]
gi|433196857|ref|ZP_20380789.1| DNA polymerase IV [Escherichia coli KTE94]
gi|218368809|emb|CAR16557.1| DNA polymerase IV [Escherichia coli IAI39]
gi|218425687|emb|CAR06479.1| DNA polymerase IV [Escherichia coli ED1a]
gi|222032079|emb|CAP74818.1| DNA polymerase IV [Escherichia coli LF82]
gi|312944855|gb|ADR25682.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|349736374|gb|AEQ11080.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|371603091|gb|EHN91770.1| DNA polymerase IV [Escherichia coli B093]
gi|431726006|gb|ELJ89834.1| DNA polymerase IV [Escherichia coli KTE94]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|403268064|ref|XP_003926107.1| PREDICTED: DNA polymerase iota isoform 1 [Saimiri boliviensis
boliviensis]
Length = 715
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 134/316 (42%), Gaps = 37/316 (11%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 69
AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+ E
Sbjct: 84 AKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVE 137
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
L + DE+ + H+ +S + +D L G I
Sbjct: 138 KRLRQL---QSDELSAVTVSGHVYNNQSINLHDILHI---------------RLLVGSQI 179
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKM 188
E+R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK++
Sbjct: 180 AAEMREAMYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEI 239
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 240 PGIGYKTTKCLE-VLGISSVHDLQTFSSKILEKELGISVAQRILKLSFGEDNSPVIPSGP 298
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
P+S SF + + + + +L L R+C D R HT+ L +
Sbjct: 299 PQSFSEEDSF---KKCSSEIEAKKRIEELLASLLNRVCRD----GRKPHTVRLIIRRYSP 351
Query: 309 SDSDSRKKFPSKSCPL 324
R+ S+ CP+
Sbjct: 352 EKHCGRE---SRQCPI 364
>gi|415843600|ref|ZP_11523476.1| DNA polymerase IV [Shigella sonnei 53G]
gi|425113565|ref|ZP_18515409.1| DNA polymerase IV [Escherichia coli 8.0566]
gi|323169562|gb|EFZ55234.1| DNA polymerase IV [Shigella sonnei 53G]
gi|408573520|gb|EKK49356.1| DNA polymerase IV [Escherichia coli 8.0566]
Length = 312
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 14 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 66
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 67 YLDVTDSVH------------------------------------------CHGSA---- 80
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 81 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 134
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 135 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 192
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 193 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|306813279|ref|ZP_07447472.1| DNA polymerase IV [Escherichia coli NC101]
gi|432970436|ref|ZP_20159315.1| DNA polymerase IV [Escherichia coli KTE207]
gi|433081206|ref|ZP_20267682.1| DNA polymerase IV [Escherichia coli KTE133]
gi|305854042|gb|EFM54481.1| DNA polymerase IV [Escherichia coli NC101]
gi|431486207|gb|ELH65858.1| DNA polymerase IV [Escherichia coli KTE207]
gi|431606254|gb|ELI75633.1| DNA polymerase IV [Escherichia coli KTE133]
Length = 350
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 52 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 104
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 105 YLDVTDSVH------------------------------------------CHGSA---- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 119 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 172
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 173 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 230
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 149/353 (42%), Gaps = 73/353 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK CP + V KA Y+ S++ +I +
Sbjct: 58 VKSAMSSVIAKRNCPNLIFV-------KARFDRYKEISSQIRAI---------------F 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
L+ TD E P SLDE D K
Sbjct: 96 LEYTDLVE-------PLSLDE-----------------------------AYLDVTENKK 119
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V+ L+
Sbjct: 120 GIPSATLIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVEEFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L I+K + GK+ LG+ L SE+ L E++G +G + +N+ RGI
Sbjct: 180 QLQIRKFYGV-GKVTAEKMYRLGIFKGIQLKDKSEEFLTENFG-KSGKYYYNVVRGIHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+A + KS G+ ++F + +AS + ++ + E ++E + L+ +K T+TL
Sbjct: 238 EVKADRIRKSLGAERTFS-----ENIAS-EIFMMERLENIAEEIERRLKGSKVAGKTVTL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 352
K SD + SK+ P + + DT LFQ ++ + G+
Sbjct: 292 -----KIKYSDFTLQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGI 339
>gi|170679693|ref|YP_001742392.1| DNA polymerase IV [Escherichia coli SMS-3-5]
gi|170517411|gb|ACB15589.1| DNA polymerase IV [Escherichia coli SMS-3-5]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300934932|ref|ZP_07149986.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|432678680|ref|ZP_19914084.1| DNA polymerase IV [Escherichia coli KTE143]
gi|300459838|gb|EFK23331.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|431225324|gb|ELF22528.1| DNA polymerase IV [Escherichia coli KTE143]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAKEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|300991266|ref|ZP_07179526.1| DNA polymerase IV, partial [Escherichia coli MS 200-1]
gi|300305583|gb|EFJ60103.1| DNA polymerase IV [Escherichia coli MS 200-1]
Length = 320
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 22 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 74
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 75 YLDVTDSVH------------------------------------------CHGSA---- 88
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 89 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 142
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 143 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 200
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 201 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 242
>gi|218550064|ref|YP_002383855.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|416895677|ref|ZP_11925561.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|417114256|ref|ZP_11965634.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|422782942|ref|ZP_16835727.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|422802135|ref|ZP_16850629.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|432430401|ref|ZP_19672847.1| DNA polymerase IV [Escherichia coli KTE187]
gi|432600770|ref|ZP_19837026.1| DNA polymerase IV [Escherichia coli KTE66]
gi|432842572|ref|ZP_20075994.1| DNA polymerase IV [Escherichia coli KTE141]
gi|432848028|ref|ZP_20079900.1| DNA polymerase IV [Escherichia coli KTE144]
gi|433206413|ref|ZP_20390118.1| DNA polymerase IV [Escherichia coli KTE97]
gi|218357605|emb|CAQ90244.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|323965213|gb|EGB60671.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|323976250|gb|EGB71343.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|327254575|gb|EGE66191.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|386141860|gb|EIG83006.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|430956759|gb|ELC75429.1| DNA polymerase IV [Escherichia coli KTE187]
gi|431144809|gb|ELE46503.1| DNA polymerase IV [Escherichia coli KTE66]
gi|431397599|gb|ELG81045.1| DNA polymerase IV [Escherichia coli KTE141]
gi|431402377|gb|ELG85689.1| DNA polymerase IV [Escherichia coli KTE144]
gi|431733416|gb|ELJ96852.1| DNA polymerase IV [Escherichia coli KTE97]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|16128217|ref|NP_414766.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|74310874|ref|YP_309293.1| DNA polymerase IV [Shigella sonnei Ss046]
gi|170021341|ref|YP_001726295.1| DNA polymerase IV [Escherichia coli ATCC 8739]
gi|170079858|ref|YP_001729178.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188492262|ref|ZP_02999532.1| DNA polymerase IV [Escherichia coli 53638]
gi|194438229|ref|ZP_03070321.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218552837|ref|YP_002385750.1| DNA polymerase IV [Escherichia coli IAI1]
gi|218693716|ref|YP_002401383.1| DNA polymerase IV [Escherichia coli 55989]
gi|238899621|ref|YP_002925417.1| DNA polymerase IV [Escherichia coli BW2952]
gi|251783788|ref|YP_002998092.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253774744|ref|YP_003037575.1| DNA polymerase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160345|ref|YP_003043453.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|254287148|ref|YP_003052896.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|300947288|ref|ZP_07161491.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|300955690|ref|ZP_07168040.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|301643542|ref|ZP_07243584.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|312970357|ref|ZP_07784538.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|331640760|ref|ZP_08341895.1| DNA polymerase IV [Escherichia coli H736]
gi|383176868|ref|YP_005454873.1| DNA polymerase IV [Shigella sonnei 53G]
gi|386279278|ref|ZP_10056964.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386596884|ref|YP_006093284.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|386612415|ref|YP_006132081.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|386703468|ref|YP_006167315.1| DNA polymerase IV [Escherichia coli P12b]
gi|387610725|ref|YP_006113841.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|387619993|ref|YP_006127620.1| DNA polymerase IV [Escherichia coli DH1]
gi|388476342|ref|YP_488526.1| DNA polymerase IV [Escherichia coli str. K-12 substr. W3110]
gi|404373579|ref|ZP_10978822.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|407467706|ref|YP_006785852.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483577|ref|YP_006780726.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484117|ref|YP_006771663.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414574461|ref|ZP_11431672.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|415777326|ref|ZP_11488578.1| DNA polymerase IV [Escherichia coli 3431]
gi|416262047|ref|ZP_11640622.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|417126868|ref|ZP_11974422.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|417135509|ref|ZP_11980294.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|417246600|ref|ZP_12039701.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|417274019|ref|ZP_12061363.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|417279671|ref|ZP_12066977.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|417293063|ref|ZP_12080343.1| DNA polymerase IV [Escherichia coli B41]
gi|417611291|ref|ZP_12261766.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|417616602|ref|ZP_12267038.1| DNA polymerase IV [Escherichia coli G58-1]
gi|417803595|ref|ZP_12450633.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|417836883|ref|ZP_12483129.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|417867906|ref|ZP_12512939.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|417946822|ref|ZP_12590031.1| DNA polymerase IV [Escherichia coli XH140A]
gi|417978142|ref|ZP_12618915.1| DNA polymerase IV [Escherichia coli XH001]
gi|418042361|ref|ZP_12680560.1| DNA polymerase IV [Escherichia coli W26]
gi|418261973|ref|ZP_12883684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|418959675|ref|ZP_13511572.1| DNA polymerase IV [Escherichia coli J53]
gi|419140734|ref|ZP_13685491.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|419152086|ref|ZP_13696674.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|419157543|ref|ZP_13702072.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|419162541|ref|ZP_13707021.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|419173609|ref|ZP_13717467.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|419368536|ref|ZP_13909667.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|419389670|ref|ZP_13930511.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|419394844|ref|ZP_13935629.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|419400199|ref|ZP_13940933.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|419405371|ref|ZP_13946075.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|419410862|ref|ZP_13951536.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|419806627|ref|ZP_14331726.1| DNA polymerase IV [Escherichia coli AI27]
gi|419811151|ref|ZP_14336028.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|419927843|ref|ZP_14445567.1| DNA polymerase IV [Escherichia coli 541-1]
gi|419942197|ref|ZP_14458821.1| DNA polymerase IV [Escherichia coli 75]
gi|420356882|ref|ZP_14857902.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|420361856|ref|ZP_14862784.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|420378556|ref|ZP_14878058.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|421776172|ref|ZP_16212778.1| DNA polymerase IV [Escherichia coli AD30]
gi|422764577|ref|ZP_16818325.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|422769504|ref|ZP_16823195.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|422776897|ref|ZP_16830550.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|422784882|ref|ZP_16837621.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|422791043|ref|ZP_16843746.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|422816251|ref|ZP_16864466.1| DNA polymerase IV [Escherichia coli M919]
gi|422990955|ref|ZP_16981726.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|422992894|ref|ZP_16983658.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|422998103|ref|ZP_16988859.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|423006588|ref|ZP_16997331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|423008209|ref|ZP_16998947.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|423022396|ref|ZP_17013099.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|423027550|ref|ZP_17018243.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|423033387|ref|ZP_17024071.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|423036253|ref|ZP_17026927.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041373|ref|ZP_17032040.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048059|ref|ZP_17038716.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423051643|ref|ZP_17040451.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058608|ref|ZP_17047404.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423701027|ref|ZP_17675486.1| DNA polymerase IV [Escherichia coli H730]
gi|425118330|ref|ZP_18520070.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|425270942|ref|ZP_18662457.1| DNA polymerase IV [Escherichia coli TW15901]
gi|425281616|ref|ZP_18672737.1| DNA polymerase IV [Escherichia coli TW00353]
gi|425286835|ref|ZP_18677773.1| DNA polymerase IV [Escherichia coli 3006]
gi|429722453|ref|ZP_19257351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774532|ref|ZP_19306535.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429779795|ref|ZP_19311748.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783847|ref|ZP_19315760.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429789185|ref|ZP_19321060.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429795415|ref|ZP_19327241.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429801341|ref|ZP_19333119.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429804973|ref|ZP_19336720.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429809784|ref|ZP_19341486.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429815544|ref|ZP_19347203.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429821132|ref|ZP_19352745.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429906805|ref|ZP_19372774.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911001|ref|ZP_19376957.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916840|ref|ZP_19382780.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921878|ref|ZP_19387799.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927696|ref|ZP_19393602.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931628|ref|ZP_19397523.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933230|ref|ZP_19399120.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938884|ref|ZP_19404758.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946527|ref|ZP_19412382.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949176|ref|ZP_19415024.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957442|ref|ZP_19423271.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|432368234|ref|ZP_19611340.1| DNA polymerase IV [Escherichia coli KTE10]
gi|432415204|ref|ZP_19657838.1| DNA polymerase IV [Escherichia coli KTE44]
gi|432483893|ref|ZP_19725821.1| DNA polymerase IV [Escherichia coli KTE212]
gi|432529562|ref|ZP_19766618.1| DNA polymerase IV [Escherichia coli KTE233]
gi|432562169|ref|ZP_19798801.1| DNA polymerase IV [Escherichia coli KTE51]
gi|432578942|ref|ZP_19815377.1| DNA polymerase IV [Escherichia coli KTE56]
gi|432625807|ref|ZP_19861795.1| DNA polymerase IV [Escherichia coli KTE77]
gi|432635595|ref|ZP_19871484.1| DNA polymerase IV [Escherichia coli KTE81]
gi|432659507|ref|ZP_19895170.1| DNA polymerase IV [Escherichia coli KTE111]
gi|432669117|ref|ZP_19904669.1| DNA polymerase IV [Escherichia coli KTE119]
gi|432684113|ref|ZP_19919435.1| DNA polymerase IV [Escherichia coli KTE156]
gi|432690117|ref|ZP_19925367.1| DNA polymerase IV [Escherichia coli KTE161]
gi|432702820|ref|ZP_19937951.1| DNA polymerase IV [Escherichia coli KTE171]
gi|432717260|ref|ZP_19952262.1| DNA polymerase IV [Escherichia coli KTE9]
gi|432735711|ref|ZP_19970503.1| DNA polymerase IV [Escherichia coli KTE42]
gi|432763540|ref|ZP_19997993.1| DNA polymerase IV [Escherichia coli KTE48]
gi|432830266|ref|ZP_20063875.1| DNA polymerase IV [Escherichia coli KTE135]
gi|432879528|ref|ZP_20096530.1| DNA polymerase IV [Escherichia coli KTE154]
gi|432944820|ref|ZP_20141225.1| DNA polymerase IV [Escherichia coli KTE196]
gi|432953143|ref|ZP_20145698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|433041743|ref|ZP_20229279.1| DNA polymerase IV [Escherichia coli KTE117]
gi|433046297|ref|ZP_20233738.1| DNA polymerase IV [Escherichia coli KTE120]
gi|433172011|ref|ZP_20356579.1| DNA polymerase IV [Escherichia coli KTE232]
gi|442594020|ref|ZP_21011944.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442600405|ref|ZP_21018082.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450238531|ref|ZP_21898924.1| DNA polymerase IV [Escherichia coli S17]
gi|2501652|sp|Q47155.1|DPO4_ECOLI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123617967|sp|Q3Z5A4.1|DPO4_SHISS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027665|sp|B1J100.1|DPO4_ECOLC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|984587|dbj|BAA07593.1| DinP [Escherichia coli W3110]
gi|1552799|gb|AAB08651.1| DinP [Escherichia coli]
gi|1786425|gb|AAC73335.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|4902967|dbj|BAA77901.1| DNA polymerase IV [Escherichia coli str. K12 substr. W3110]
gi|73854351|gb|AAZ87058.1| damage-inducible protein P [Shigella sonnei Ss046]
gi|169756269|gb|ACA78968.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
gi|169887693|gb|ACB01400.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188487461|gb|EDU62564.1| DNA polymerase IV [Escherichia coli 53638]
gi|194422893|gb|EDX38888.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218350448|emb|CAU96135.1| DNA polymerase IV [Escherichia coli 55989]
gi|218359605|emb|CAQ97146.1| DNA polymerase IV [Escherichia coli IAI1]
gi|238860838|gb|ACR62836.1| DNA polymerase IV [Escherichia coli BW2952]
gi|242376061|emb|CAQ30746.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253325788|gb|ACT30390.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972246|gb|ACT37917.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|253976455|gb|ACT42125.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|260450573|gb|ACX40995.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|300317441|gb|EFJ67225.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|300453089|gb|EFK16709.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|301078042|gb|EFK92848.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|309700461|emb|CBI99755.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|310337006|gb|EFQ02144.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|315134916|dbj|BAJ42075.1| DNA polymerase IV [Escherichia coli DH1]
gi|315616806|gb|EFU97423.1| DNA polymerase IV [Escherichia coli 3431]
gi|320176695|gb|EFW51732.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|323943351|gb|EGB39504.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|323945385|gb|EGB41439.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|323963542|gb|EGB59100.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|323972412|gb|EGB67619.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|324115582|gb|EGC09521.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|331037558|gb|EGI09778.1| DNA polymerase IV [Escherichia coli H736]
gi|332341584|gb|AEE54918.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|340730476|gb|EGR59807.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|340741871|gb|EGR76014.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|341921195|gb|EGT70797.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|342361447|gb|EGU25585.1| DNA polymerase IV [Escherichia coli XH140A]
gi|344192205|gb|EGV46302.1| DNA polymerase IV [Escherichia coli XH001]
gi|345366378|gb|EGW98469.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|345382492|gb|EGX13371.1| DNA polymerase IV [Escherichia coli G58-1]
gi|354858087|gb|EHF18538.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|354859941|gb|EHF20388.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|354866637|gb|EHF27060.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|354876971|gb|EHF37331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|354879280|gb|EHF39618.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|354883867|gb|EHF44181.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|354885668|gb|EHF45960.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|354888735|gb|EHF48989.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|354901336|gb|EHF61463.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905567|gb|EHF65650.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908074|gb|EHF68130.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918546|gb|EHF78502.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354922234|gb|EHF82149.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|359331082|dbj|BAL37529.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MDS42]
gi|378000067|gb|EHV63141.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|378003670|gb|EHV66710.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|378014734|gb|EHV77632.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|378017007|gb|EHV79882.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|378038204|gb|EHW00721.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|378222886|gb|EHX83120.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|378244963|gb|EHY04902.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|378251696|gb|EHY11592.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|378252030|gb|EHY11924.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|378257760|gb|EHY17596.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|378261353|gb|EHY21147.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|383101636|gb|AFG39145.1| DNA polymerase IV [Escherichia coli P12b]
gi|383474725|gb|EID66705.1| DNA polymerase IV [Escherichia coli W26]
gi|384377367|gb|EIE35261.1| DNA polymerase IV [Escherichia coli J53]
gi|384470373|gb|EIE54485.1| DNA polymerase IV [Escherichia coli AI27]
gi|385156093|gb|EIF18092.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|385540238|gb|EIF87061.1| DNA polymerase IV [Escherichia coli M919]
gi|385713513|gb|EIG50445.1| DNA polymerase IV [Escherichia coli H730]
gi|386123629|gb|EIG72220.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386145118|gb|EIG91582.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|386153363|gb|EIH04652.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|386209228|gb|EII19715.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|386233494|gb|EII65475.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|386237770|gb|EII74714.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|386252635|gb|EIJ02326.1| DNA polymerase IV [Escherichia coli B41]
gi|388398494|gb|EIL59385.1| DNA polymerase IV [Escherichia coli 75]
gi|388406661|gb|EIL67057.1| DNA polymerase IV [Escherichia coli 541-1]
gi|391289580|gb|EIQ48072.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|391289700|gb|EIQ48187.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|391297130|gb|EIQ55197.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|391307028|gb|EIQ64768.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|397903383|gb|EJL19684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|404292949|gb|EJZ49726.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|406779279|gb|AFS58703.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055874|gb|AFS75925.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063741|gb|AFS84788.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408199329|gb|EKI24531.1| DNA polymerase IV [Escherichia coli TW15901]
gi|408206458|gb|EKI31260.1| DNA polymerase IV [Escherichia coli TW00353]
gi|408219187|gb|EKI43353.1| DNA polymerase IV [Escherichia coli 3006]
gi|408458911|gb|EKJ82696.1| DNA polymerase IV [Escherichia coli AD30]
gi|408573916|gb|EKK49721.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|429351348|gb|EKY88068.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429352051|gb|EKY88767.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352809|gb|EKY89518.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429366722|gb|EKZ03323.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429367633|gb|EKZ04225.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429370128|gb|EKZ06694.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429382515|gb|EKZ18979.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429384748|gb|EKZ21202.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429385271|gb|EKZ21724.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429396964|gb|EKZ33311.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429399210|gb|EKZ35531.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429399499|gb|EKZ35819.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410254|gb|EKZ46476.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429412154|gb|EKZ48351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429419139|gb|EKZ55277.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427698|gb|EKZ63778.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434542|gb|EKZ70566.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429435366|gb|EKZ71384.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439924|gb|EKZ75903.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429444507|gb|EKZ80452.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450811|gb|EKZ86703.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456301|gb|EKZ92146.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|430889126|gb|ELC11795.1| DNA polymerase IV [Escherichia coli KTE10]
gi|430944387|gb|ELC64484.1| DNA polymerase IV [Escherichia coli KTE44]
gi|431019546|gb|ELD32942.1| DNA polymerase IV [Escherichia coli KTE212]
gi|431057654|gb|ELD67077.1| DNA polymerase IV [Escherichia coli KTE233]
gi|431100334|gb|ELE05338.1| DNA polymerase IV [Escherichia coli KTE51]
gi|431109270|gb|ELE13236.1| DNA polymerase IV [Escherichia coli KTE56]
gi|431165705|gb|ELE66037.1| DNA polymerase IV [Escherichia coli KTE77]
gi|431174381|gb|ELE74427.1| DNA polymerase IV [Escherichia coli KTE81]
gi|431203978|gb|ELF02561.1| DNA polymerase IV [Escherichia coli KTE111]
gi|431214156|gb|ELF11988.1| DNA polymerase IV [Escherichia coli KTE119]
gi|431225659|gb|ELF22853.1| DNA polymerase IV [Escherichia coli KTE156]
gi|431231751|gb|ELF27435.1| DNA polymerase IV [Escherichia coli KTE161]
gi|431247804|gb|ELF42018.1| DNA polymerase IV [Escherichia coli KTE171]
gi|431266864|gb|ELF58397.1| DNA polymerase IV [Escherichia coli KTE9]
gi|431287982|gb|ELF78768.1| DNA polymerase IV [Escherichia coli KTE42]
gi|431313688|gb|ELG01657.1| DNA polymerase IV [Escherichia coli KTE48]
gi|431380028|gb|ELG64928.1| DNA polymerase IV [Escherichia coli KTE135]
gi|431414302|gb|ELG97045.1| DNA polymerase IV [Escherichia coli KTE154]
gi|431463836|gb|ELH43959.1| DNA polymerase IV [Escherichia coli KTE196]
gi|431470804|gb|ELH50698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|431560660|gb|ELI34169.1| DNA polymerase IV [Escherichia coli KTE117]
gi|431573448|gb|ELI46247.1| DNA polymerase IV [Escherichia coli KTE120]
gi|431696825|gb|ELJ61978.1| DNA polymerase IV [Escherichia coli KTE232]
gi|441606093|emb|CCP97224.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441650606|emb|CCQ03511.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449325468|gb|EMD15372.1| DNA polymerase IV [Escherichia coli S17]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|431896181|gb|ELK05597.1| DNA polymerase iota [Pteropus alecto]
Length = 681
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 113/255 (44%), Gaps = 27/255 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 47 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPLVERLGFDENFVDL 100
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + HI +S + +D L
Sbjct: 101 TEMVEKRLQQLHS---DEISALTVSGHIYNNQSINQHDILHI---------------RLL 142
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 143 IGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESTQDLIHSLN 202
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+K+M +G K L+ LG+++V DL FS L++ G + + ++ G V
Sbjct: 203 HLKEMPGIGYKTTKRLEG-LGISSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPV 261
Query: 244 QARLLPKSHGSGKSF 258
P+S SF
Sbjct: 262 TPSGPPQSFSEEDSF 276
>gi|432552289|ref|ZP_19789022.1| DNA polymerase IV [Escherichia coli KTE47]
gi|431087216|gb|ELD93215.1| DNA polymerase IV [Escherichia coli KTE47]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419146340|ref|ZP_13691037.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|421680998|ref|ZP_16120832.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
gi|378002027|gb|EHV65082.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|404342029|gb|EJZ68427.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
Length = 343
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 45 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 97
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 98 YLDVTDSVH------------------------------------------CHGSA---- 111
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 112 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 165
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 166 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 223
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 224 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|417621489|ref|ZP_12271819.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|419373694|ref|ZP_13914754.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
gi|345386937|gb|EGX16769.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|378227113|gb|EHX87289.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
Length = 312
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 14 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 66
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 67 YLDVTDSVH------------------------------------------CHGSA---- 80
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 81 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 134
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 135 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 192
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 193 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|416293780|ref|ZP_11650545.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|420323949|ref|ZP_14825736.1| DNA polymerase IV [Shigella flexneri CCH060]
gi|320186906|gb|EFW61624.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|391257297|gb|EIQ16415.1| DNA polymerase IV [Shigella flexneri CCH060]
Length = 350
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 52 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 104
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 105 YLDVTDSVH------------------------------------------CHGSA---- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 119 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 172
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 173 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 230
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|301019021|ref|ZP_07183237.1| DNA polymerase IV [Escherichia coli MS 196-1]
gi|299882426|gb|EFI90637.1| DNA polymerase IV [Escherichia coli MS 196-1]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|187733383|ref|YP_001879027.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
gi|226738240|sp|B2U3S3.1|DPO4_SHIB3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187430375|gb|ACD09649.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
Length = 354
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 56 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 109 YLDVTDSVH------------------------------------------CHGSA---- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 123 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 177 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 234
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 235 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>gi|19568895|gb|AAL91959.1|AF483096_1 DNA polymerase DinB [Escherichia coli]
gi|19568897|gb|AAL91960.1|AF483097_1 DNA polymerase DinB [Escherichia coli]
gi|19568899|gb|AAL91961.1|AF483098_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|24111721|ref|NP_706231.1| DNA polymerase IV [Shigella flexneri 2a str. 301]
gi|30061848|ref|NP_836019.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|384541857|ref|YP_005725918.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|415859559|ref|ZP_11533758.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|417700311|ref|ZP_12349456.1| DNA polymerase IV [Shigella flexneri K-218]
gi|417705742|ref|ZP_12354814.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|417710878|ref|ZP_12359885.1| DNA polymerase IV [Shigella flexneri K-272]
gi|417715544|ref|ZP_12364480.1| DNA polymerase IV [Shigella flexneri K-227]
gi|417721265|ref|ZP_12370115.1| DNA polymerase IV [Shigella flexneri K-304]
gi|417726647|ref|ZP_12375394.1| DNA polymerase IV [Shigella flexneri K-671]
gi|417731847|ref|ZP_12380519.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|417737137|ref|ZP_12385746.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|417741777|ref|ZP_12390331.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|418253475|ref|ZP_12878500.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
gi|420318723|ref|ZP_14820582.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|420329470|ref|ZP_14831180.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|420339821|ref|ZP_14841352.1| DNA polymerase IV [Shigella flexneri K-404]
gi|81723732|sp|Q83M86.1|DPO4_SHIFL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24050502|gb|AAN41938.1| damage-inducible protein P [Shigella flexneri 2a str. 301]
gi|30040092|gb|AAP15825.1| damage-inducible protein P [Shigella flexneri 2a str. 2457T]
gi|281599641|gb|ADA72625.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|313646637|gb|EFS11096.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|332761629|gb|EGJ91909.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|332761724|gb|EGJ92003.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|332764446|gb|EGJ94679.1| DNA polymerase IV [Shigella flexneri K-671]
gi|332768578|gb|EGJ98760.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|333008732|gb|EGK28196.1| DNA polymerase IV [Shigella flexneri K-218]
gi|333009710|gb|EGK29160.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|333010782|gb|EGK30208.1| DNA polymerase IV [Shigella flexneri K-272]
gi|333021280|gb|EGK40533.1| DNA polymerase IV [Shigella flexneri K-227]
gi|333022110|gb|EGK41353.1| DNA polymerase IV [Shigella flexneri K-304]
gi|391255077|gb|EIQ14230.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|391260219|gb|EIQ19283.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|391274563|gb|EIQ33370.1| DNA polymerase IV [Shigella flexneri K-404]
gi|397901349|gb|EJL17695.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
Length = 351
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|325979102|ref|YP_004288818.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325179030|emb|CBZ49074.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 365
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L
Sbjct: 132 -----AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAH 297
V++ + KS GS +++ + + + + E+S +R+ L++N ++
Sbjct: 245 SPVKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGR 295
Query: 298 TLTL 301
T+ L
Sbjct: 296 TIVL 299
>gi|374338723|ref|YP_005095440.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
gi|372284840|emb|CCF03144.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
Length = 365
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L
Sbjct: 132 -----AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFYGVGKRSVEKL-HQLGVFTGADLLEMPEMTLIDLFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAH 297
V++ + KS GS +++ + + + + E+S +R+ L++N ++
Sbjct: 245 SPVKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGR 295
Query: 298 TLTL 301
T+ L
Sbjct: 296 TIVL 299
>gi|417826337|ref|ZP_12472917.1| impB/mucB/samB family protein [Shigella flexneri J1713]
gi|335578251|gb|EGM63476.1| impB/mucB/samB family protein [Shigella flexneri J1713]
Length = 343
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 45 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 97
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 98 YLDVTDSVH------------------------------------------CHGSA---- 111
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 112 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 165
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 166 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 223
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 224 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ +ET T SAGI+ NK +AK+AS KP QTT+ V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADEVQDFLDVLDVRK 171
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK+ ELG+ DL + S L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAQKMYELGIFKGKDLREKSLAFLERNFG-NSGLYFYELSRGIHRAEVQPFR 229
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA-HTLTL 301
+ KS G+ +F + ++ L+ + E+++ RL Q + +A T+TL
Sbjct: 230 IRKSVGAEHTF--AENFTSEIYMEEALSAIAEDVARRL-----QRQEVAGRTITL 277
>gi|83647018|ref|YP_435453.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
gi|83635061|gb|ABC31028.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
Length = 356
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R +V ++ T SAG+A NK LAK+AS NKP + VK + LP+
Sbjct: 119 ATLIAEEIRARVRQDLRLTVSAGVAPNKFLAKIASDWNKPDGIFVIRPQDVKDFIPQLPV 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+K+ + GK+ + LG+TT GDL + S+D L+ +G + G L+N++RG+ VQ
Sbjct: 179 RKINGV-GKVTAAKMEALGITTCGDLQRLSKDDLERHFG-SYGERLYNLSRGVDNRPVQT 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+ KS ++ L+ + ++ L EEL ER
Sbjct: 237 EWVRKSLSVEHTY--DHDLQNLDAILDSCEPLFEELLERF 274
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AKE CP + V AR K ++RK I E++
Sbjct: 57 VRSAMPSKTAKEKCPHLIFVPPHFARYKE---------------ISRK-------IREIF 94
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D K
Sbjct: 95 YEYTDLVE-------PLSLDE-----------------------------AYLDVTENKK 118
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ I E+R ++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+
Sbjct: 119 EIESANQIAREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKIENFLE 178
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP++K + G++ + LG+ DL K + +L +G +G++ +N+ RGI
Sbjct: 179 ELPVEKFYGV-GRVTANKMFTLGIFKGKDLKKKTLQELVSLFG-KSGSYYYNVVRGIHNS 236
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS ++F + + Q +N+ E LS L L++N + LTL
Sbjct: 237 EVKPHRIQKSVAVERTF-----FEDLFDEQQ-INEKLESLSAELHQRLQKNNILGRALTL 290
>gi|331671823|ref|ZP_08372619.1| DNA polymerase IV [Escherichia coli TA280]
gi|331070812|gb|EGI42171.1| DNA polymerase IV [Escherichia coli TA280]
Length = 351
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGVALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|157156229|ref|YP_001461421.1| DNA polymerase IV [Escherichia coli E24377A]
gi|191165703|ref|ZP_03027542.1| DNA polymerase IV [Escherichia coli B7A]
gi|193063270|ref|ZP_03044361.1| DNA polymerase IV [Escherichia coli E22]
gi|194427631|ref|ZP_03060179.1| DNA polymerase IV [Escherichia coli B171]
gi|260842478|ref|YP_003220256.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|260853485|ref|YP_003227376.1| DNA polymerase IV [Escherichia coli O26:H11 str. 11368]
gi|260866431|ref|YP_003232833.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300823445|ref|ZP_07103575.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300921971|ref|ZP_07138117.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|301325439|ref|ZP_07218925.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|331666565|ref|ZP_08367439.1| DNA polymerase IV [Escherichia coli TA271]
gi|331675915|ref|ZP_08376632.1| DNA polymerase IV [Escherichia coli H591]
gi|415780327|ref|ZP_11490550.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|415801746|ref|ZP_11499726.1| DNA polymerase IV [Escherichia coli E128010]
gi|415814397|ref|ZP_11506017.1| DNA polymerase IV [Escherichia coli LT-68]
gi|415821217|ref|ZP_11510231.1| DNA polymerase IV [Escherichia coli OK1180]
gi|416342416|ref|ZP_11676647.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|417139526|ref|ZP_11982948.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|417173878|ref|ZP_12003674.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|417186796|ref|ZP_12011827.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|417190773|ref|ZP_12013369.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|417216634|ref|ZP_12023306.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|417252579|ref|ZP_12044338.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|417268239|ref|ZP_12055600.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|417299321|ref|ZP_12086551.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|417311526|ref|ZP_12098251.1| DNA polymerase IV [Escherichia coli PCN033]
gi|417589919|ref|ZP_12240640.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|417595109|ref|ZP_12245781.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|418945175|ref|ZP_13498083.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|419195265|ref|ZP_13738677.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|419201317|ref|ZP_13744547.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|419207244|ref|ZP_13750373.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|419213691|ref|ZP_13756723.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|419219514|ref|ZP_13762471.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|419224983|ref|ZP_13767875.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|419230880|ref|ZP_13773673.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|419236112|ref|ZP_13778864.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|419241701|ref|ZP_13784351.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|419247104|ref|ZP_13789721.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|419252871|ref|ZP_13795422.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|419258875|ref|ZP_13801336.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|419264918|ref|ZP_13807305.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|419270564|ref|ZP_13812897.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|419276359|ref|ZP_13818629.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|419281933|ref|ZP_13824156.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|419287730|ref|ZP_13829848.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|419293066|ref|ZP_13835127.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|419304792|ref|ZP_13846706.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|419309819|ref|ZP_13851696.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|419315128|ref|ZP_13856958.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|419320903|ref|ZP_13862647.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|419327148|ref|ZP_13868781.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|419332519|ref|ZP_13874085.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|419339504|ref|ZP_13880981.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|419379121|ref|ZP_13920102.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|419384373|ref|ZP_13925280.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|419868034|ref|ZP_14390337.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|419885738|ref|ZP_14406415.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|419888861|ref|ZP_14409324.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|419897859|ref|ZP_14417433.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|419901234|ref|ZP_14420604.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|419908192|ref|ZP_14426938.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|419949116|ref|ZP_14465373.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|420090813|ref|ZP_14602576.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|420097127|ref|ZP_14608432.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|420102342|ref|ZP_14613355.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|420110151|ref|ZP_14620184.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|420116243|ref|ZP_14625686.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|420122888|ref|ZP_14631791.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|420127544|ref|ZP_14636169.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|420133582|ref|ZP_14641796.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|420389587|ref|ZP_14888860.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|422835044|ref|ZP_16883102.1| DNA polymerase IV [Escherichia coli E101]
gi|422957405|ref|ZP_16969619.1| DNA polymerase IV [Escherichia coli H494]
gi|422976448|ref|ZP_16977049.1| DNA polymerase IV [Escherichia coli TA124]
gi|423709983|ref|ZP_17684333.1| DNA polymerase IV [Escherichia coli B799]
gi|424748379|ref|ZP_18176525.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|424759498|ref|ZP_18187162.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|424770422|ref|ZP_18197624.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|425377041|ref|ZP_18761460.1| DNA polymerase IV [Escherichia coli EC1865]
gi|432375351|ref|ZP_19618365.1| DNA polymerase IV [Escherichia coli KTE12]
gi|432812388|ref|ZP_20046237.1| DNA polymerase IV [Escherichia coli KTE101]
gi|432833329|ref|ZP_20066877.1| DNA polymerase IV [Escherichia coli KTE136]
gi|432872913|ref|ZP_20092611.1| DNA polymerase IV [Escherichia coli KTE147]
gi|432966383|ref|ZP_20155303.1| DNA polymerase IV [Escherichia coli KTE203]
gi|450210255|ref|ZP_21894032.1| DNA polymerase IV [Escherichia coli O08]
gi|189027662|sp|A7ZHZ2.1|DPO4_ECO24 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157078259|gb|ABV17967.1| DNA polymerase IV [Escherichia coli E24377A]
gi|190904210|gb|EDV63920.1| DNA polymerase IV [Escherichia coli B7A]
gi|192931178|gb|EDV83781.1| DNA polymerase IV [Escherichia coli E22]
gi|194414401|gb|EDX30675.1| DNA polymerase IV [Escherichia coli B171]
gi|257752134|dbj|BAI23636.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. 11368]
gi|257757625|dbj|BAI29122.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|257762787|dbj|BAI34282.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300421641|gb|EFK04952.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|300524063|gb|EFK45132.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300847737|gb|EFK75497.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|320201150|gb|EFW75733.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|323158084|gb|EFZ44183.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|323160304|gb|EFZ46257.1| DNA polymerase IV [Escherichia coli E128010]
gi|323171085|gb|EFZ56734.1| DNA polymerase IV [Escherichia coli LT-68]
gi|323178473|gb|EFZ64051.1| DNA polymerase IV [Escherichia coli OK1180]
gi|331065789|gb|EGI37673.1| DNA polymerase IV [Escherichia coli TA271]
gi|331076475|gb|EGI47752.1| DNA polymerase IV [Escherichia coli H591]
gi|338766893|gb|EGP21788.1| DNA polymerase IV [Escherichia coli PCN033]
gi|345346277|gb|EGW78613.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|345362411|gb|EGW94563.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|371593951|gb|EHN82824.1| DNA polymerase IV [Escherichia coli TA124]
gi|371598406|gb|EHN87207.1| DNA polymerase IV [Escherichia coli H494]
gi|371613370|gb|EHO01869.1| DNA polymerase IV [Escherichia coli E101]
gi|375319510|gb|EHS65649.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|378053892|gb|EHW16182.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|378057556|gb|EHW19783.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|378063638|gb|EHW25804.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|378069002|gb|EHW31097.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|378072568|gb|EHW34625.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|378082703|gb|EHW44647.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|378083002|gb|EHW44941.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|378091174|gb|EHW53007.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|378095024|gb|EHW56814.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|378103286|gb|EHW64956.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|378108255|gb|EHW69870.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|378117382|gb|EHW78897.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|378119153|gb|EHW80648.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|378121509|gb|EHW82960.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|378134548|gb|EHW95869.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|378136364|gb|EHW97658.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|378140419|gb|EHX01646.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|378147177|gb|EHX08325.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|378152921|gb|EHX14007.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|378161542|gb|EHX22518.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|378175763|gb|EHX36577.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|378175934|gb|EHX36745.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|378176918|gb|EHX37719.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|378190970|gb|EHX51546.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|378192154|gb|EHX52720.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|378234266|gb|EHX94344.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|378237724|gb|EHX97746.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|385704631|gb|EIG41703.1| DNA polymerase IV [Escherichia coli B799]
gi|386157254|gb|EIH13596.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|386176570|gb|EIH54049.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|386181871|gb|EIH64630.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|386191745|gb|EIH80486.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|386193496|gb|EIH87780.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|386216510|gb|EII32999.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|386230597|gb|EII57952.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|386257113|gb|EIJ12604.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|388346124|gb|EIL11866.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|388348168|gb|EIL13787.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|388354612|gb|EIL19515.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|388359096|gb|EIL23450.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|388375707|gb|EIL38709.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|388376486|gb|EIL39399.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|388419826|gb|EIL79536.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|391315132|gb|EIQ72665.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|394385113|gb|EJE62657.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|394385211|gb|EJE62752.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|394388729|gb|EJE65972.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|394404379|gb|EJE79786.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|394404527|gb|EJE79896.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|394411939|gb|EJE86120.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|394418029|gb|EJE91732.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|394425091|gb|EJE98115.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|408310459|gb|EKJ27508.1| DNA polymerase IV [Escherichia coli EC1865]
gi|421942427|gb|EKT99761.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944722|gb|EKU01967.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|421947192|gb|EKU04275.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|430901255|gb|ELC23223.1| DNA polymerase IV [Escherichia coli KTE12]
gi|431357280|gb|ELG43947.1| DNA polymerase IV [Escherichia coli KTE101]
gi|431388491|gb|ELG72214.1| DNA polymerase IV [Escherichia coli KTE136]
gi|431405014|gb|ELG88257.1| DNA polymerase IV [Escherichia coli KTE147]
gi|431475744|gb|ELH55548.1| DNA polymerase IV [Escherichia coli KTE203]
gi|449323141|gb|EMD13107.1| DNA polymerase IV [Escherichia coli O08]
Length = 351
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 137/323 (42%), Gaps = 73/323 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S++ G AK+ CP++ V K Y+ +++ I E S+DE
Sbjct: 58 VRSAISGIMAKKYCPELIFV-------KPRFDRYKEISTKIHKIFHEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++K GN S
Sbjct: 111 YLDVT------------------------------QNKKGNPSAG--------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L+ E+R ++ KE T SAGI+ NK +AK+AS NKP Q TV V L
Sbjct: 126 -------LLAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDEVNAFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K + GK+ T +LGV T DL S + L++ +G +G + +N+ RGI
Sbjct: 179 EELPIRKFYGV-GKVTTEKMYQLGVFTGLDLKSKSVEFLEKHFG-KSGNFYFNVVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV++ + KS + +F S + ++ + E ++ L L ++K T+T
Sbjct: 237 SEVKSDRITKSVAAEHTFD------VNLSSEIFMLEKLEGIAIALERRLNKHKVAGKTIT 290
Query: 301 LHASAFKSSDSDSRKKFPSKSCP 323
L K SD ++ SK+ P
Sbjct: 291 L-----KIKYSDFTQQTRSKTVP 308
>gi|407421058|gb|EKF38800.1| DNA polymerase eta, putative [Trypanosoma cruzi marinkellei]
Length = 521
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 47/322 (14%)
Query: 9 DEAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSILA--RKG 50
++A+E CP +++ V A G K L YR A ++ +IL
Sbjct: 75 EKAREKCPHVKISHVATYAVGDTEYKYHENSRKGTHKVSLEPYREASRKIFNILCSFEGV 134
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGN---DSKATV 107
E+ S+DE YLD+T AA+ LA + SH+ + + N D +A +
Sbjct: 135 EVEKGSVDEAYLDVTLAAQRELASI------RLSSAQCSSHLEDVMHHETNVIPDRQADI 188
Query: 108 KEWLCR----------------CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAH 151
W +H+ LL +V +LR ++ +E + CSAGIAH
Sbjct: 189 DAWFFEKGKGFNEVFDTALHPPVTVEHQ-LLLGAASRVVWKLREKIYQELRYDCSAGIAH 247
Query: 152 NKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL-GVTTVGD 210
NK+LAK S +KP QQT + V + P + ++ GGK G + G D
Sbjct: 248 NKILAKSISSRHKPNQQTLLLPDRVASAVWDTPYQSIRGFGGKFGECVCRACGGAELFRD 307
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+KLQ G + G + + R E+++ + + K+ + KSF P + + +
Sbjct: 308 AWLVPLEKLQSVLGDDDGAYAFYRLRCHGKEKIKEQSVTKTLMASKSFSPPTS--SSEGL 365
Query: 271 QHWLNQLCEELSERLCSDLEQN 292
+ W+ L EL R E N
Sbjct: 366 RKWITVLSSELCARYKEFCETN 387
>gi|358340778|dbj|GAA48604.1| DNA polymerase eta subunit [Clonorchis sinensis]
Length = 452
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 162 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 221
M Q+ + FS + + P+ + LGGKLG ++ G+ T+G L + S +L E
Sbjct: 1 MEHVRSQSGLTFSPLS--FEIFPVYFRRNLGGKLGVAIMERFGIQTLGQLTEISLTQLTE 58
Query: 222 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
+G T WL+ + RG + V R + +S G K+F G L + S+++WL L +EL
Sbjct: 59 VFGEKTAQWLYELCRGHDPDAVTPRSIAQSVGCSKNFVGRSILTSTQSIEYWLRCLSDEL 118
Query: 282 SERLCSDLEQNKRIAHTLTLHA 303
ERL D ++R A LTL+
Sbjct: 119 VERLIDDRRIHQRHATRLTLYV 140
>gi|357616687|gb|EHJ70343.1| DNA polymerase IV [Danaus plexippus]
Length = 569
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 177/392 (45%), Gaps = 51/392 (13%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 64
M +A +VCP ++L+ DL YR A +++ ++L K E+ +DE ++D+
Sbjct: 36 MLVSDALKVCPNLKLI------NGEDLHDYRAASNKIFTVLQTFKCPVEKLGMDENFIDV 89
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ + +E +K+ L + G+ + E +C C A L
Sbjct: 90 TN----------------IVQERIKNVNLKSITVSGHLYTESNAECVCGCHAR-----LK 128
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PFSSVKGLLDSL 183
I +E+R ++ E FT AGIAHNK+LAKL +NKP QTT+ P V +
Sbjct: 129 VASQIASEMRHKIYDELGFTTCAGIAHNKLLAKLICPLNKPNDQTTIYPEHGVSFMSTLQ 188
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
++ + +G K +L ++ + TV DL + S + L++ + + L N++ G +
Sbjct: 189 SVRSIPSIGSKTTEALISQ-KIITVRDLQEVSIEVLKKHFSSDMAVRLKNLSVGEDNTPI 247
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL--TL 301
+ P+S G SF KTV SV+ + + + L +RL + ++ RI +L TL
Sbjct: 248 KQTGRPQSIGLEDSF------KTV-SVKSEVEEKFQALLQRLLILVREDGRIPVSLRVTL 300
Query: 302 HASAFK--SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 359
K SS +SR+ C + I T + +G R+ L S ++
Sbjct: 301 RKKDVKRLSSHRESRQ------CQVSPSIFTINNGTLTVTDSG-RQKLMSIIMRLFNKLI 353
Query: 360 ---SGWRITALSVSASKIVPVLSGTCSIMKYF 388
+ +T + ++ +K ++G SI+ Y
Sbjct: 354 DLSKPFHLTLVGLAFTKFQERMTGRGSIVNYL 385
>gi|218703546|ref|YP_002411065.1| DNA polymerase IV [Escherichia coli UMN026]
gi|293403377|ref|ZP_06647468.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298378989|ref|ZP_06988870.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300899474|ref|ZP_07117722.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|387605765|ref|YP_006094621.1| DNA polymerase IV [Escherichia coli 042]
gi|419937299|ref|ZP_14454208.1| DNA polymerase IV [Escherichia coli 576-1]
gi|432351904|ref|ZP_19595216.1| DNA polymerase IV [Escherichia coli KTE2]
gi|432400372|ref|ZP_19643133.1| DNA polymerase IV [Escherichia coli KTE26]
gi|432429401|ref|ZP_19671865.1| DNA polymerase IV [Escherichia coli KTE181]
gi|432459232|ref|ZP_19701398.1| DNA polymerase IV [Escherichia coli KTE204]
gi|432474291|ref|ZP_19716304.1| DNA polymerase IV [Escherichia coli KTE208]
gi|432492561|ref|ZP_19734401.1| DNA polymerase IV [Escherichia coli KTE213]
gi|432520899|ref|ZP_19758066.1| DNA polymerase IV [Escherichia coli KTE228]
gi|432541115|ref|ZP_19777992.1| DNA polymerase IV [Escherichia coli KTE235]
gi|432629807|ref|ZP_19865760.1| DNA polymerase IV [Escherichia coli KTE80]
gi|432639371|ref|ZP_19875218.1| DNA polymerase IV [Escherichia coli KTE83]
gi|432664449|ref|ZP_19900047.1| DNA polymerase IV [Escherichia coli KTE116]
gi|432773442|ref|ZP_20007734.1| DNA polymerase IV [Escherichia coli KTE54]
gi|432837814|ref|ZP_20071308.1| DNA polymerase IV [Escherichia coli KTE140]
gi|432884160|ref|ZP_20099185.1| DNA polymerase IV [Escherichia coli KTE158]
gi|432909829|ref|ZP_20117077.1| DNA polymerase IV [Escherichia coli KTE190]
gi|433017218|ref|ZP_20205491.1| DNA polymerase IV [Escherichia coli KTE105]
gi|433051502|ref|ZP_20238748.1| DNA polymerase IV [Escherichia coli KTE122]
gi|433066408|ref|ZP_20253260.1| DNA polymerase IV [Escherichia coli KTE128]
gi|433157182|ref|ZP_20342062.1| DNA polymerase IV [Escherichia coli KTE177]
gi|433176648|ref|ZP_20361125.1| DNA polymerase IV [Escherichia coli KTE82]
gi|433201685|ref|ZP_20385499.1| DNA polymerase IV [Escherichia coli KTE95]
gi|59889801|emb|CAH19157.1| Damage inducible protein P [Escherichia coli 042]
gi|218430643|emb|CAR11509.1| DNA polymerase IV [Escherichia coli UMN026]
gi|284920065|emb|CBG33122.1| DNA polymerase IV [Escherichia coli 042]
gi|291429230|gb|EFF02250.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298280102|gb|EFI21606.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300356953|gb|EFJ72823.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|388398069|gb|EIL59011.1| DNA polymerase IV [Escherichia coli 576-1]
gi|430880894|gb|ELC04158.1| DNA polymerase IV [Escherichia coli KTE2]
gi|430930487|gb|ELC50988.1| DNA polymerase IV [Escherichia coli KTE26]
gi|430947998|gb|ELC67680.1| DNA polymerase IV [Escherichia coli KTE181]
gi|430992835|gb|ELD09196.1| DNA polymerase IV [Escherichia coli KTE204]
gi|431010231|gb|ELD24579.1| DNA polymerase IV [Escherichia coli KTE208]
gi|431013536|gb|ELD27266.1| DNA polymerase IV [Escherichia coli KTE213]
gi|431045862|gb|ELD56000.1| DNA polymerase IV [Escherichia coli KTE228]
gi|431064734|gb|ELD73593.1| DNA polymerase IV [Escherichia coli KTE235]
gi|431174927|gb|ELE74959.1| DNA polymerase IV [Escherichia coli KTE80]
gi|431185687|gb|ELE85392.1| DNA polymerase IV [Escherichia coli KTE83]
gi|431205008|gb|ELF03518.1| DNA polymerase IV [Escherichia coli KTE116]
gi|431321128|gb|ELG08743.1| DNA polymerase IV [Escherichia coli KTE54]
gi|431392151|gb|ELG75752.1| DNA polymerase IV [Escherichia coli KTE140]
gi|431420388|gb|ELH02673.1| DNA polymerase IV [Escherichia coli KTE158]
gi|431447905|gb|ELH28624.1| DNA polymerase IV [Escherichia coli KTE190]
gi|431537801|gb|ELI13914.1| DNA polymerase IV [Escherichia coli KTE105]
gi|431576189|gb|ELI48888.1| DNA polymerase IV [Escherichia coli KTE122]
gi|431592583|gb|ELI63155.1| DNA polymerase IV [Escherichia coli KTE128]
gi|431682845|gb|ELJ48493.1| DNA polymerase IV [Escherichia coli KTE177]
gi|431711199|gb|ELJ75553.1| DNA polymerase IV [Escherichia coli KTE82]
gi|431726787|gb|ELJ90556.1| DNA polymerase IV [Escherichia coli KTE95]
Length = 351
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A + CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKFCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>gi|432994080|ref|ZP_20182699.1| DNA polymerase IV [Escherichia coli KTE218]
gi|433114195|ref|ZP_20300016.1| DNA polymerase IV [Escherichia coli KTE153]
gi|431510662|gb|ELH88906.1| DNA polymerase IV [Escherichia coli KTE218]
gi|431637267|gb|ELJ05365.1| DNA polymerase IV [Escherichia coli KTE153]
Length = 351
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 71 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 123
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 124 YLDVT------------------------------ENKMG-------------------- 133
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 134 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 191
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 192 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 249
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 250 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 303
Query: 301 L 301
L
Sbjct: 304 L 304
>gi|420334490|ref|ZP_14836112.1| DNA polymerase IV [Shigella flexneri K-315]
gi|391268181|gb|EIQ27109.1| DNA polymerase IV [Shigella flexneri K-315]
Length = 351
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417688076|ref|ZP_12337325.1| DNA polymerase IV [Shigella boydii 5216-82]
gi|332094996|gb|EGJ00035.1| DNA polymerase IV [Shigella boydii 5216-82]
Length = 345
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|19568863|gb|AAL91943.1|AF483080_1 DNA polymerase DinB [Escherichia coli]
Length = 241
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 120/290 (41%), Gaps = 72/290 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YL
Sbjct: 1 SAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYL 53
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD+ C A
Sbjct: 54 DVTDSVH------------------------------------------CHGSA------ 65
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +
Sbjct: 66 ----TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQT 121
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +
Sbjct: 122 LPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERD 179
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 180 VNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 219
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M AK++CP++ V+ R Y+ +V +I E S+DE
Sbjct: 57 VRSAMSSVVAKKLCPELIFVRHHFER-------YKEVSQQVRAIFFEYTDLVEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +K GN S
Sbjct: 110 YLDVT------------------------------VNKKGNPS----------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV + V L
Sbjct: 123 -----ATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTEVLDFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L IKK + GK+ LG+ T DL +E L E++G +G + I RGI
Sbjct: 178 EALDIKKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTENFG-KSGAHYYRIVRGIHH 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V K H + KS R + + ++ + +ELSE L L ++ T+T
Sbjct: 236 SAV------KPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKTIT 289
Query: 301 L 301
L
Sbjct: 290 L 290
>gi|41057942|gb|AAR98928.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|19568891|gb|AAL91957.1|AF483094_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|422764774|ref|ZP_16818501.1| impB/mucB/samB family protein [Escherichia coli E1520]
gi|323938777|gb|EGB35023.1| impB/mucB/samB family protein [Escherichia coli E1520]
Length = 351
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPTEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 14/177 (7%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
++ ++R Q+ +E + T SAGI+ NK LAK+AS +NKP T+P L SLPI+K
Sbjct: 91 ILADKIRRQIFRELQLTASAGISFNKFLAKVASDINKPNGIATIPPGKALEFLSSLPIRK 150
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK ++LG+TT DL ++ ED L +G G++ +I RGI V+ +
Sbjct: 151 FYGV-GKATEQKMHQLGITTGYDLRQWQEDNLILHFG-KIGSFFHDIVRGIDNRPVEPQR 208
Query: 248 LPKSHGSGKSFPGPRALKT--VASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTL 301
+ KS G + A+ T + + L L EEL L + KRI +TLTL
Sbjct: 209 IRKSIGCETTL----AIDTDDICKINDILTGLAEELGNSL-----KRKRIGGYTLTL 256
>gi|424125733|ref|ZP_17858963.1| DNA polymerase IV [Escherichia coli PA9]
gi|390692917|gb|EIN67571.1| DNA polymerase IV [Escherichia coli PA9]
Length = 345
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|26246277|ref|NP_752316.1| DNA polymerase IV [Escherichia coli CFT073]
gi|227884751|ref|ZP_04002556.1| DNA polymerase IV [Escherichia coli 83972]
gi|300977370|ref|ZP_07173861.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|301045874|ref|ZP_07193061.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|331656311|ref|ZP_08357273.1| DNA polymerase IV [Escherichia coli TA206]
gi|331681650|ref|ZP_08382283.1| DNA polymerase IV [Escherichia coli H299]
gi|386627857|ref|YP_006147577.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|386632777|ref|YP_006152496.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386637671|ref|YP_006104469.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|417144149|ref|ZP_11985955.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|422362112|ref|ZP_16442686.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|422367371|ref|ZP_16447820.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|432410336|ref|ZP_19653019.1| DNA polymerase IV [Escherichia coli KTE39]
gi|432434908|ref|ZP_19677310.1| DNA polymerase IV [Escherichia coli KTE188]
gi|432455211|ref|ZP_19697415.1| DNA polymerase IV [Escherichia coli KTE201]
gi|432494133|ref|ZP_19735952.1| DNA polymerase IV [Escherichia coli KTE214]
gi|432502994|ref|ZP_19744732.1| DNA polymerase IV [Escherichia coli KTE220]
gi|432522416|ref|ZP_19759556.1| DNA polymerase IV [Escherichia coli KTE230]
gi|432567127|ref|ZP_19803654.1| DNA polymerase IV [Escherichia coli KTE53]
gi|432591390|ref|ZP_19827719.1| DNA polymerase IV [Escherichia coli KTE60]
gi|432606171|ref|ZP_19842368.1| DNA polymerase IV [Escherichia coli KTE67]
gi|432615051|ref|ZP_19851186.1| DNA polymerase IV [Escherichia coli KTE75]
gi|432649814|ref|ZP_19885577.1| DNA polymerase IV [Escherichia coli KTE87]
gi|432782195|ref|ZP_20016381.1| DNA polymerase IV [Escherichia coli KTE63]
gi|432897074|ref|ZP_20108070.1| DNA polymerase IV [Escherichia coli KTE192]
gi|432977007|ref|ZP_20165833.1| DNA polymerase IV [Escherichia coli KTE209]
gi|432998500|ref|ZP_20187041.1| DNA polymerase IV [Escherichia coli KTE223]
gi|433027326|ref|ZP_20215203.1| DNA polymerase IV [Escherichia coli KTE109]
gi|433056568|ref|ZP_20243663.1| DNA polymerase IV [Escherichia coli KTE124]
gi|433085886|ref|ZP_20272293.1| DNA polymerase IV [Escherichia coli KTE137]
gi|433123831|ref|ZP_20309427.1| DNA polymerase IV [Escherichia coli KTE160]
gi|433137901|ref|ZP_20323191.1| DNA polymerase IV [Escherichia coli KTE167]
gi|433147740|ref|ZP_20332809.1| DNA polymerase IV [Escherichia coli KTE174]
gi|433211173|ref|ZP_20394792.1| DNA polymerase IV [Escherichia coli KTE99]
gi|442605942|ref|ZP_21020751.1| DNA polymerase IV [Escherichia coli Nissle 1917]
gi|29427651|sp|P59477.1|DPO4_ECOL6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|26106675|gb|AAN78860.1|AE016756_43 DNA polymerase IV [Escherichia coli CFT073]
gi|227838352|gb|EEJ48818.1| DNA polymerase IV [Escherichia coli 83972]
gi|300302124|gb|EFJ58509.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|300409895|gb|EFJ93433.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|307552163|gb|ADN44938.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|315295163|gb|EFU54498.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|315300865|gb|EFU60087.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|331054559|gb|EGI26568.1| DNA polymerase IV [Escherichia coli TA206]
gi|331080852|gb|EGI52017.1| DNA polymerase IV [Escherichia coli H299]
gi|355418756|gb|AER82953.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|355423676|gb|AER87872.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386164032|gb|EIH25818.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|430938272|gb|ELC58513.1| DNA polymerase IV [Escherichia coli KTE39]
gi|430967292|gb|ELC84647.1| DNA polymerase IV [Escherichia coli KTE188]
gi|430985634|gb|ELD02227.1| DNA polymerase IV [Escherichia coli KTE201]
gi|431028666|gb|ELD41708.1| DNA polymerase IV [Escherichia coli KTE214]
gi|431042411|gb|ELD52900.1| DNA polymerase IV [Escherichia coli KTE220]
gi|431055130|gb|ELD64693.1| DNA polymerase IV [Escherichia coli KTE230]
gi|431102960|gb|ELE07630.1| DNA polymerase IV [Escherichia coli KTE53]
gi|431132834|gb|ELE34832.1| DNA polymerase IV [Escherichia coli KTE60]
gi|431141797|gb|ELE43560.1| DNA polymerase IV [Escherichia coli KTE67]
gi|431157991|gb|ELE58612.1| DNA polymerase IV [Escherichia coli KTE75]
gi|431193643|gb|ELE92975.1| DNA polymerase IV [Escherichia coli KTE87]
gi|431331907|gb|ELG19150.1| DNA polymerase IV [Escherichia coli KTE63]
gi|431429884|gb|ELH11718.1| DNA polymerase IV [Escherichia coli KTE192]
gi|431483035|gb|ELH62735.1| DNA polymerase IV [Escherichia coli KTE209]
gi|431514879|gb|ELH92718.1| DNA polymerase IV [Escherichia coli KTE223]
gi|431546441|gb|ELI20838.1| DNA polymerase IV [Escherichia coli KTE109]
gi|431574801|gb|ELI47560.1| DNA polymerase IV [Escherichia coli KTE124]
gi|431610462|gb|ELI79754.1| DNA polymerase IV [Escherichia coli KTE137]
gi|431650663|gb|ELJ17979.1| DNA polymerase IV [Escherichia coli KTE160]
gi|431665368|gb|ELJ32087.1| DNA polymerase IV [Escherichia coli KTE167]
gi|431677496|gb|ELJ43572.1| DNA polymerase IV [Escherichia coli KTE174]
gi|431736312|gb|ELJ99642.1| DNA polymerase IV [Escherichia coli KTE99]
gi|441712967|emb|CCQ06728.1| DNA polymerase IV [Escherichia coli Nissle 1917]
Length = 351
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|194214689|ref|XP_001499840.2| PREDICTED: DNA polymerase iota-like [Equus caballus]
Length = 864
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 132/302 (43%), Gaps = 34/302 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M +AKE CPQ+ LV DL+ YR +V +L ER DE
Sbjct: 204 VKKCMNIRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDEN 257
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++DLT+ E L + DE+ + H+ +++ D H
Sbjct: 258 FVDLTEMVEKRLQQL---QNDELLALTVSGHVYN-------------NQFVNLHDVLHIR 301
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L G I E+R V T AG+A NK+LAKL SG+ KP QQT + S + L+
Sbjct: 302 --LLVGSQIAAEMREAVYNRLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLI 359
Query: 181 DSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
SL IK++ +G K L+ LG+++V DL S L++ G + + ++ G
Sbjct: 360 HSLNHIKEIPGIGYKTAKRLE-ALGISSVRDLQTCSSKILEKELGISVAQRIQKLSFGED 418
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V + P+S SF + + V++ + +L L R+C Q+ R HT+
Sbjct: 419 NSPVMSSGPPQSFSEEDSF---KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTI 471
Query: 300 TL 301
L
Sbjct: 472 RL 473
>gi|419862901|ref|ZP_14385473.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
gi|388343966|gb|EIL09864.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
Length = 351
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|238828270|pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
gi|238828273|pdb|3GV5|D Chain D, Human Dna Polymerase Iota In Complex With T Template Dna
And Incoming Ddadp
Length = 420
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 137/317 (43%), Gaps = 37/317 (11%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAA 68
+AKE CPQ+ LV DL+ YR +V +L ER DE ++DLT+
Sbjct: 83 DAKEKCPQLVLV------NGEDLTRYREXSYKVTELLEEFSPVVERLGFDENFVDLTEXV 136
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E L + DE+ + H+ +S + D H L+ G
Sbjct: 137 EKRLQQLQS---DELSAVTVSGHVYNNQSIN-------------LLDVLHIRLLV--GSQ 178
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E R + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK+
Sbjct: 179 IAAEXREAXYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKE 238
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 239 IPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSG 297
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
P+S SF + + ++ + +L L R+C Q+ R HT+ L +
Sbjct: 298 PPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLIIRRYS 350
Query: 308 SSDSDSRKKFPSKSCPL 324
S R+ S+ CP+
Sbjct: 351 SEKHYGRE---SRQCPI 364
>gi|82775832|ref|YP_402179.1| DNA polymerase IV [Shigella dysenteriae Sd197]
gi|309786021|ref|ZP_07680650.1| DNA polymerase IV [Shigella dysenteriae 1617]
gi|123563306|sp|Q32J17.1|DPO4_SHIDS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81239980|gb|ABB60690.1| damage-inducible protein P [Shigella dysenteriae Sd197]
gi|308926132|gb|EFP71610.1| DNA polymerase IV [Shigella dysenteriae 1617]
Length = 351
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057936|gb|AAR98925.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 35 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 87
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 88 YLDVTDSVH------------------------------------------CHGSA---- 101
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 102 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPVFL 155
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 156 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 213
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 214 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|425141743|ref|ZP_18542062.1| DNA polymerase IV [Escherichia coli 10.0869]
gi|408605090|gb|EKK78624.1| DNA polymerase IV [Escherichia coli 10.0869]
Length = 312
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 14 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 66
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 67 YLDVTDSVH------------------------------------------CHGSA---- 80
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 81 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 134
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 135 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 192
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 193 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|424100583|ref|ZP_17835780.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|424566835|ref|ZP_18007788.1| DNA polymerase IV [Escherichia coli EC4448]
gi|425370440|ref|ZP_18755434.1| DNA polymerase IV [Escherichia coli EC1864]
gi|390674241|gb|EIN50443.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|390916441|gb|EIP74899.1| DNA polymerase IV [Escherichia coli EC4448]
gi|408301573|gb|EKJ19162.1| DNA polymerase IV [Escherichia coli EC1864]
Length = 343
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 45 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 97
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 98 YLDVTDSVH------------------------------------------CHGSA---- 111
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 112 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 165
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 166 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 223
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 224 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ + T+ T SAGI+ NK LAK+AS NKP Q T+ V+ L++L IKK
Sbjct: 121 LIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEEVEAFLEALEIKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G K + + G+ T DL S D L+E +G G + I RGI V
Sbjct: 181 FFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFG-KAGKAYYYIVRGIHNSPVSPDR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
L KS G+ ++F L + +++ L + EELS RL
Sbjct: 239 LTKSVGTERTF--DENLSSEVYLENKLAHIVEELSLRL 274
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 118/287 (41%), Gaps = 76/287 (26%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-----ERASID 58
S+M A+ +CPQ + + + +YR A V+ IL RC E S+D
Sbjct: 87 SAMTAARARSLCPQAIFL-------RPRMEAYREASRLVMGIL----RCYTPLVEPLSLD 135
Query: 59 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
E +LD T A
Sbjct: 136 EAFLDATAATA------------------------------------------------- 146
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
D +LA V I E+R ++ +ET T SAG+++NK+LAKLAS KP VP
Sbjct: 147 -DGILA--VQIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERGLT 203
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L LP+ K+ +G L + +G+ TV DL S + L +G TG W + IARGI
Sbjct: 204 FLAPLPVSKLHGVGPATVKKL-SSMGIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGI 261
Query: 239 SGEEVQARLLPKSHGSGKSFP----GPRALKTVASVQHWLNQLCEEL 281
VQ KS G+ ++FP P+ + +A++Q Q+ L
Sbjct: 262 DLRPVQPSRQRKSVGTERTFPKNLADPKVM--LATLQQMAGQVAARL 306
>gi|419923466|ref|ZP_14441411.1| DNA polymerase IV [Escherichia coli 541-15]
gi|388393729|gb|EIL55084.1| DNA polymerase IV [Escherichia coli 541-15]
Length = 351
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGMRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|429030285|ref|ZP_19096187.1| DNA polymerase IV [Escherichia coli 96.0939]
gi|427294596|gb|EKW57772.1| DNA polymerase IV [Escherichia coli 96.0939]
Length = 351
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S++ G +AK++CP +L+ VP Y+ + I +++
Sbjct: 44 VRSAISGIQAKKLCP--DLIFVP-----PRFDRYKEISKQ---------------IRKIF 81
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD TD E P SLDE +++ E+K GN S
Sbjct: 82 LDYTDLVE-------PLSLDE-------AYLDVTENKKGNPS------------------ 109
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ +E T SAGI+ NK +AK+AS NKP Q TV ++ L+
Sbjct: 110 ----ATLIAQEIRKRIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDEIEPFLE 165
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L +KK + GK+ +LG+ T DL + S + L+ +G N+G + I RGI
Sbjct: 166 KLDVKKFYGV-GKVTAEKMYQLGIFTGYDLKQKSVEYLENHFG-NSGLHYFQIVRGIHNS 223
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ KS G+ ++F L + ++ L + +EL +R L+++K T+TL
Sbjct: 224 AVKPNRKIKSVGAERTF--GENLSSEIFMEERLQSIAKELEKR----LQKSKISGKTITL 277
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
TE+R ++ ET T SAG+++NK LAKLAS M+KP Q +P +++L +KK
Sbjct: 128 TEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGAEFIEALAVKKFHG 187
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 250
+G L N LG+ T DL S + LQ+ +G +G W + IARG V+ K
Sbjct: 188 VGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFG-KSGGWYYAIARGEDDRPVEPNRPRK 245
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
S GS +FP R L A ++ + ++ +++ C E+N+ T+T+
Sbjct: 246 SSGSETTFPEDRFLP--AEIEEGVLEMADDVWV-WC---EKNRSFGATVTV 290
>gi|209917444|ref|YP_002291528.1| DNA polymerase IV [Escherichia coli SE11]
gi|209910703|dbj|BAG75777.1| DNA polymerase IV [Escherichia coli SE11]
Length = 351
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|168750214|ref|ZP_02775236.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|168757259|ref|ZP_02782266.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|168770029|ref|ZP_02795036.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|168776129|ref|ZP_02801136.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|168782992|ref|ZP_02807999.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|168789704|ref|ZP_02814711.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|168800331|ref|ZP_02825338.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|195938634|ref|ZP_03084016.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4024]
gi|208807461|ref|ZP_03249798.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208812602|ref|ZP_03253931.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208820027|ref|ZP_03260347.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209399967|ref|YP_002268858.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|254791391|ref|YP_003076228.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|261223714|ref|ZP_05937995.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK2000]
gi|261255877|ref|ZP_05948410.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK966]
gi|291281075|ref|YP_003497893.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|387505183|ref|YP_006157439.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|416318859|ref|ZP_11661411.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|416328254|ref|ZP_11668044.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|416781031|ref|ZP_11877075.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|416793031|ref|ZP_11882249.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|416803736|ref|ZP_11886849.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|416813945|ref|ZP_11891438.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97]
gi|416824639|ref|ZP_11896104.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|416835278|ref|ZP_11901383.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|419066306|ref|ZP_13612994.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|419073361|ref|ZP_13618935.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|419078503|ref|ZP_13623990.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|419084152|ref|ZP_13629569.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|419090203|ref|ZP_13635524.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|419096132|ref|ZP_13641377.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|419101821|ref|ZP_13646989.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|419113079|ref|ZP_13658114.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|419118591|ref|ZP_13663578.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|419124239|ref|ZP_13669147.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|419129827|ref|ZP_13674683.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|420267592|ref|ZP_14770000.1| DNA polymerase IV [Escherichia coli PA22]
gi|420273226|ref|ZP_14775560.1| DNA polymerase IV [Escherichia coli PA40]
gi|420278735|ref|ZP_14781002.1| DNA polymerase IV [Escherichia coli TW06591]
gi|420284829|ref|ZP_14787047.1| DNA polymerase IV [Escherichia coli TW10246]
gi|420290282|ref|ZP_14792450.1| DNA polymerase IV [Escherichia coli TW11039]
gi|420296005|ref|ZP_14798102.1| DNA polymerase IV [Escherichia coli TW09109]
gi|420301963|ref|ZP_14803996.1| DNA polymerase IV [Escherichia coli TW10119]
gi|420307650|ref|ZP_14809624.1| DNA polymerase IV [Escherichia coli EC1738]
gi|420313179|ref|ZP_14815090.1| DNA polymerase IV [Escherichia coli EC1734]
gi|421810416|ref|ZP_16246231.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|421821868|ref|ZP_16257312.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|424081296|ref|ZP_17818189.1| DNA polymerase IV [Escherichia coli FDA517]
gi|424087949|ref|ZP_17824244.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|424094183|ref|ZP_17829978.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|424113385|ref|ZP_17847571.1| DNA polymerase IV [Escherichia coli PA3]
gi|424131751|ref|ZP_17864590.1| DNA polymerase IV [Escherichia coli PA10]
gi|424184280|ref|ZP_17887664.1| DNA polymerase IV [Escherichia coli PA25]
gi|424261109|ref|ZP_17893562.1| DNA polymerase IV [Escherichia coli PA28]
gi|424459629|ref|ZP_17910618.1| DNA polymerase IV [Escherichia coli PA39]
gi|424466082|ref|ZP_17916308.1| DNA polymerase IV [Escherichia coli PA41]
gi|424478674|ref|ZP_17927947.1| DNA polymerase IV [Escherichia coli TW07945]
gi|424484695|ref|ZP_17933597.1| DNA polymerase IV [Escherichia coli TW09098]
gi|424490770|ref|ZP_17939228.1| DNA polymerase IV [Escherichia coli TW09195]
gi|424497905|ref|ZP_17945213.1| DNA polymerase IV [Escherichia coli EC4203]
gi|424504144|ref|ZP_17950957.1| DNA polymerase IV [Escherichia coli EC4196]
gi|424510386|ref|ZP_17956671.1| DNA polymerase IV [Escherichia coli TW14313]
gi|424517970|ref|ZP_17962432.1| DNA polymerase IV [Escherichia coli TW14301]
gi|424541876|ref|ZP_17984738.1| DNA polymerase IV [Escherichia coli EC4402]
gi|424548197|ref|ZP_17990440.1| DNA polymerase IV [Escherichia coli EC4439]
gi|424554478|ref|ZP_17996233.1| DNA polymerase IV [Escherichia coli EC4436]
gi|424560819|ref|ZP_18002134.1| DNA polymerase IV [Escherichia coli EC4437]
gi|424573032|ref|ZP_18013489.1| DNA polymerase IV [Escherichia coli EC1845]
gi|424579006|ref|ZP_18018968.1| DNA polymerase IV [Escherichia coli EC1863]
gi|425101766|ref|ZP_18504439.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|425129462|ref|ZP_18530590.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|425135804|ref|ZP_18536556.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|425148018|ref|ZP_18547942.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|425153634|ref|ZP_18553209.1| DNA polymerase IV [Escherichia coli PA34]
gi|425177683|ref|ZP_18575765.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|425190635|ref|ZP_18587789.1| DNA polymerase IV [Escherichia coli NE1487]
gi|425196965|ref|ZP_18593641.1| DNA polymerase IV [Escherichia coli NE037]
gi|425203633|ref|ZP_18599788.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|425240540|ref|ZP_18634204.1| DNA polymerase IV [Escherichia coli MA6]
gi|425246629|ref|ZP_18639859.1| DNA polymerase IV [Escherichia coli 5905]
gi|425252425|ref|ZP_18645332.1| DNA polymerase IV [Escherichia coli CB7326]
gi|425258760|ref|ZP_18651153.1| DNA polymerase IV [Escherichia coli EC96038]
gi|425264871|ref|ZP_18656815.1| DNA polymerase IV [Escherichia coli 5412]
gi|425292256|ref|ZP_18682877.1| DNA polymerase IV [Escherichia coli PA38]
gi|425309039|ref|ZP_18698538.1| DNA polymerase IV [Escherichia coli EC1735]
gi|425314964|ref|ZP_18704069.1| DNA polymerase IV [Escherichia coli EC1736]
gi|425321040|ref|ZP_18709746.1| DNA polymerase IV [Escherichia coli EC1737]
gi|425327203|ref|ZP_18715460.1| DNA polymerase IV [Escherichia coli EC1846]
gi|425333388|ref|ZP_18721142.1| DNA polymerase IV [Escherichia coli EC1847]
gi|425339806|ref|ZP_18727076.1| DNA polymerase IV [Escherichia coli EC1848]
gi|425345687|ref|ZP_18732522.1| DNA polymerase IV [Escherichia coli EC1849]
gi|425351906|ref|ZP_18738314.1| DNA polymerase IV [Escherichia coli EC1850]
gi|425357891|ref|ZP_18743889.1| DNA polymerase IV [Escherichia coli EC1856]
gi|425364006|ref|ZP_18749590.1| DNA polymerase IV [Escherichia coli EC1862]
gi|425383234|ref|ZP_18767139.1| DNA polymerase IV [Escherichia coli EC1866]
gi|425389935|ref|ZP_18773418.1| DNA polymerase IV [Escherichia coli EC1868]
gi|425396053|ref|ZP_18779124.1| DNA polymerase IV [Escherichia coli EC1869]
gi|425402036|ref|ZP_18784665.1| DNA polymerase IV [Escherichia coli EC1870]
gi|428944644|ref|ZP_19017317.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|428963029|ref|ZP_19034235.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|428969083|ref|ZP_19039744.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|428999510|ref|ZP_19068046.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|429036460|ref|ZP_19101923.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|429053602|ref|ZP_19118113.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|429064690|ref|ZP_19128580.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|429071309|ref|ZP_19134672.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|444922499|ref|ZP_21242239.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444928781|ref|ZP_21247948.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444934174|ref|ZP_21253133.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444939759|ref|ZP_21258422.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444945335|ref|ZP_21263769.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444950870|ref|ZP_21269109.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444967403|ref|ZP_21284886.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444972907|ref|ZP_21290206.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444978424|ref|ZP_21295427.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444988975|ref|ZP_21305722.1| DNA polymerase IV [Escherichia coli PA19]
gi|444994301|ref|ZP_21310907.1| DNA polymerase IV [Escherichia coli PA13]
gi|444999826|ref|ZP_21316295.1| DNA polymerase IV [Escherichia coli PA2]
gi|445005267|ref|ZP_21321618.1| DNA polymerase IV [Escherichia coli PA47]
gi|445010457|ref|ZP_21326659.1| DNA polymerase IV [Escherichia coli PA48]
gi|445016218|ref|ZP_21332275.1| DNA polymerase IV [Escherichia coli PA8]
gi|445021692|ref|ZP_21337621.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|445032409|ref|ZP_21348042.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|445038106|ref|ZP_21353584.1| DNA polymerase IV [Escherichia coli PA35]
gi|445043278|ref|ZP_21358622.1| DNA polymerase IV [Escherichia coli 3.4880]
gi|452971414|ref|ZP_21969641.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4009]
gi|187768454|gb|EDU32298.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|188015590|gb|EDU53712.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|188999602|gb|EDU68588.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|189355747|gb|EDU74166.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|189361061|gb|EDU79480.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|189370777|gb|EDU89193.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|189377361|gb|EDU95777.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|208727262|gb|EDZ76863.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208733879|gb|EDZ82566.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208740150|gb|EDZ87832.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209161367|gb|ACI38800.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|209745364|gb|ACI70989.1| damage-inducible protein DinP [Escherichia coli]
gi|209745368|gb|ACI70991.1| damage-inducible protein DinP [Escherichia coli]
gi|209745370|gb|ACI70992.1| damage-inducible protein DinP [Escherichia coli]
gi|209745372|gb|ACI70993.1| damage-inducible protein DinP [Escherichia coli]
gi|254590791|gb|ACT70152.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|290760948|gb|ADD54909.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|320190215|gb|EFW64865.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|320638166|gb|EFX07915.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|320643248|gb|EFX12447.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|320648895|gb|EFX17513.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|320654675|gb|EFX22676.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660243|gb|EFX27753.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|320665009|gb|EFX32119.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|326342451|gb|EGD66231.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|374357177|gb|AEZ38884.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|377921136|gb|EHU85143.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|377932632|gb|EHU96481.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|377934635|gb|EHU98462.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|377940705|gb|EHV04453.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|377950794|gb|EHV14417.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|377951760|gb|EHV15374.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|377955900|gb|EHV19453.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|377965870|gb|EHV29283.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|377973921|gb|EHV37251.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|377982138|gb|EHV45391.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|377983088|gb|EHV46335.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|390651325|gb|EIN29627.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|390653842|gb|EIN31944.1| DNA polymerase IV [Escherichia coli FDA517]
gi|390675300|gb|EIN51453.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|390689438|gb|EIN64390.1| DNA polymerase IV [Escherichia coli PA3]
gi|390709080|gb|EIN82213.1| DNA polymerase IV [Escherichia coli PA10]
gi|390720703|gb|EIN93411.1| DNA polymerase IV [Escherichia coli PA22]
gi|390734529|gb|EIO06046.1| DNA polymerase IV [Escherichia coli PA25]
gi|390737811|gb|EIO09068.1| DNA polymerase IV [Escherichia coli PA28]
gi|390762811|gb|EIO32066.1| DNA polymerase IV [Escherichia coli PA40]
gi|390777003|gb|EIO44879.1| DNA polymerase IV [Escherichia coli PA41]
gi|390785709|gb|EIO53251.1| DNA polymerase IV [Escherichia coli TW06591]
gi|390786878|gb|EIO54379.1| DNA polymerase IV [Escherichia coli PA39]
gi|390794948|gb|EIO62233.1| DNA polymerase IV [Escherichia coli TW10246]
gi|390802420|gb|EIO69457.1| DNA polymerase IV [Escherichia coli TW11039]
gi|390810887|gb|EIO77615.1| DNA polymerase IV [Escherichia coli TW07945]
gi|390811777|gb|EIO78462.1| DNA polymerase IV [Escherichia coli TW09109]
gi|390819763|gb|EIO86092.1| DNA polymerase IV [Escherichia coli TW10119]
gi|390824204|gb|EIO90207.1| DNA polymerase IV [Escherichia coli TW09098]
gi|390837680|gb|EIP02049.1| DNA polymerase IV [Escherichia coli EC4203]
gi|390840820|gb|EIP04819.1| DNA polymerase IV [Escherichia coli EC4196]
gi|390844539|gb|EIP08267.1| DNA polymerase IV [Escherichia coli TW09195]
gi|390856286|gb|EIP18904.1| DNA polymerase IV [Escherichia coli TW14301]
gi|390861790|gb|EIP24020.1| DNA polymerase IV [Escherichia coli TW14313]
gi|390886893|gb|EIP46938.1| DNA polymerase IV [Escherichia coli EC4402]
gi|390888618|gb|EIP48453.1| DNA polymerase IV [Escherichia coli EC4439]
gi|390895823|gb|EIP55251.1| DNA polymerase IV [Escherichia coli EC4436]
gi|390903876|gb|EIP62892.1| DNA polymerase IV [Escherichia coli EC1738]
gi|390911796|gb|EIP70485.1| DNA polymerase IV [Escherichia coli EC4437]
gi|390912249|gb|EIP70913.1| DNA polymerase IV [Escherichia coli EC1734]
gi|390925373|gb|EIP83075.1| DNA polymerase IV [Escherichia coli EC1863]
gi|390926499|gb|EIP84073.1| DNA polymerase IV [Escherichia coli EC1845]
gi|408077148|gb|EKH11361.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|408086778|gb|EKH20281.1| DNA polymerase IV [Escherichia coli PA34]
gi|408110766|gb|EKH42546.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|408122641|gb|EKH53466.1| DNA polymerase IV [Escherichia coli NE1487]
gi|408130775|gb|EKH60868.1| DNA polymerase IV [Escherichia coli NE037]
gi|408132747|gb|EKH62691.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|408173384|gb|EKI00408.1| DNA polymerase IV [Escherichia coli MA6]
gi|408175304|gb|EKI02236.1| DNA polymerase IV [Escherichia coli 5905]
gi|408187695|gb|EKI13623.1| DNA polymerase IV [Escherichia coli CB7326]
gi|408193072|gb|EKI18626.1| DNA polymerase IV [Escherichia coli 5412]
gi|408193438|gb|EKI18974.1| DNA polymerase IV [Escherichia coli EC96038]
gi|408233796|gb|EKI56870.1| DNA polymerase IV [Escherichia coli PA38]
gi|408240406|gb|EKI63097.1| DNA polymerase IV [Escherichia coli EC1735]
gi|408249932|gb|EKI71840.1| DNA polymerase IV [Escherichia coli EC1736]
gi|408254161|gb|EKI75706.1| DNA polymerase IV [Escherichia coli EC1737]
gi|408260604|gb|EKI81707.1| DNA polymerase IV [Escherichia coli EC1846]
gi|408269132|gb|EKI89419.1| DNA polymerase IV [Escherichia coli EC1847]
gi|408270855|gb|EKI91012.1| DNA polymerase IV [Escherichia coli EC1848]
gi|408279493|gb|EKI99099.1| DNA polymerase IV [Escherichia coli EC1849]
gi|408285961|gb|EKJ04932.1| DNA polymerase IV [Escherichia coli EC1850]
gi|408288793|gb|EKJ07595.1| DNA polymerase IV [Escherichia coli EC1856]
gi|408301411|gb|EKJ19032.1| DNA polymerase IV [Escherichia coli EC1862]
gi|408319081|gb|EKJ35252.1| DNA polymerase IV [Escherichia coli EC1868]
gi|408319154|gb|EKJ35314.1| DNA polymerase IV [Escherichia coli EC1866]
gi|408332099|gb|EKJ47189.1| DNA polymerase IV [Escherichia coli EC1869]
gi|408339326|gb|EKJ53933.1| DNA polymerase IV [Escherichia coli EC1870]
gi|408559634|gb|EKK35946.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|408591388|gb|EKK65821.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|408592913|gb|EKK67267.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|408606135|gb|EKK79602.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|408613102|gb|EKK86431.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|427218324|gb|EKV87335.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|427235148|gb|EKW02790.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|427236794|gb|EKW04351.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|427271555|gb|EKW36347.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|427307312|gb|EKW69784.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|427322322|gb|EKW83957.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|427335050|gb|EKW96099.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|427337139|gb|EKW98067.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|444543247|gb|ELV22541.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444551408|gb|ELV29354.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444552473|gb|ELV30284.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444565710|gb|ELV42563.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444568003|gb|ELV44711.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444572460|gb|ELV48886.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444586723|gb|ELV62211.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444600565|gb|ELV75399.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444609608|gb|ELV84065.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444615865|gb|ELV90053.1| DNA polymerase IV [Escherichia coli PA13]
gi|444615968|gb|ELV90150.1| DNA polymerase IV [Escherichia coli PA19]
gi|444624303|gb|ELV98203.1| DNA polymerase IV [Escherichia coli PA2]
gi|444633494|gb|ELW07018.1| DNA polymerase IV [Escherichia coli PA48]
gi|444633639|gb|ELW07145.1| DNA polymerase IV [Escherichia coli PA47]
gi|444638363|gb|ELW11702.1| DNA polymerase IV [Escherichia coli PA8]
gi|444648478|gb|ELW21407.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|444654681|gb|ELW27329.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|444663608|gb|ELW35825.1| DNA polymerase IV [Escherichia coli PA35]
gi|444668209|gb|ELW40232.1| DNA polymerase IV [Escherichia coli 3.4880]
Length = 351
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 135/323 (41%), Gaps = 71/323 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A++ CP++ V+ R K R E + E S+DE Y
Sbjct: 58 VRSAMSGYLAQKNCPELIFVKPRFDRYKEISQQIRQVFFEYTDL------VEPLSLDEAY 111
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T ++K GN S
Sbjct: 112 LDVT------------------------------QNKKGNPS------------------ 123
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++L +T T SAGI+ NK +AK+AS NKP Q TV V L
Sbjct: 124 ----ATLIAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEEVLEFLS 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ +LG+ T DL K S + L + +G +G +N+ RGI
Sbjct: 180 ALDIRKFYGV-GKVTAEKMYQLGIFTGADLKKKSLEFLNQEFG-KSGQHYYNVVRGIHLS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ PKS G+ ++F S + ++ Q E +++ L L+++K T+TL
Sbjct: 238 TVKPSRTPKSVGAERTFSEN------LSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCPL 324
K SD + SK+ P
Sbjct: 292 -----KIKYSDFTLQTRSKTLPF 309
>gi|425303750|ref|ZP_18693556.1| DNA polymerase IV [Escherichia coli N1]
gi|408232494|gb|EKI55692.1| DNA polymerase IV [Escherichia coli N1]
Length = 351
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPYLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|416286267|ref|ZP_11648245.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|420345344|ref|ZP_14846777.1| DNA polymerase IV [Shigella boydii 965-58]
gi|320178933|gb|EFW53895.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|391276627|gb|EIQ35396.1| DNA polymerase IV [Shigella boydii 965-58]
Length = 350
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 52 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 104
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 105 YLDVTDSVH------------------------------------------CHGSA---- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 119 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 172
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 173 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 230
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 231 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|301019119|ref|ZP_07183323.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331661627|ref|ZP_08362550.1| DNA polymerase IV [Escherichia coli TA143]
gi|419917055|ref|ZP_14435335.1| DNA polymerase IV [Escherichia coli KD2]
gi|422330511|ref|ZP_16411528.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|432390183|ref|ZP_19633048.1| DNA polymerase IV [Escherichia coli KTE21]
gi|432769059|ref|ZP_20003434.1| DNA polymerase IV [Escherichia coli KTE50]
gi|432791514|ref|ZP_20025608.1| DNA polymerase IV [Escherichia coli KTE78]
gi|432797481|ref|ZP_20031509.1| DNA polymerase IV [Escherichia coli KTE79]
gi|432959552|ref|ZP_20149930.1| DNA polymerase IV [Escherichia coli KTE202]
gi|433061471|ref|ZP_20248440.1| DNA polymerase IV [Escherichia coli KTE125]
gi|300399378|gb|EFJ82916.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331060049|gb|EGI32013.1| DNA polymerase IV [Escherichia coli TA143]
gi|373248531|gb|EHP67959.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|388394924|gb|EIL56165.1| DNA polymerase IV [Escherichia coli KD2]
gi|430922926|gb|ELC43664.1| DNA polymerase IV [Escherichia coli KTE21]
gi|431319354|gb|ELG07025.1| DNA polymerase IV [Escherichia coli KTE50]
gi|431342310|gb|ELG29289.1| DNA polymerase IV [Escherichia coli KTE78]
gi|431345701|gb|ELG32615.1| DNA polymerase IV [Escherichia coli KTE79]
gi|431479984|gb|ELH59715.1| DNA polymerase IV [Escherichia coli KTE202]
gi|431588521|gb|ELI59795.1| DNA polymerase IV [Escherichia coli KTE125]
Length = 351
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|386617769|ref|YP_006137349.1| DNA polymerase IV [Escherichia coli NA114]
gi|387828289|ref|YP_003348226.1| DNA polymerase IV [Escherichia coli SE15]
gi|432396106|ref|ZP_19638898.1| DNA polymerase IV [Escherichia coli KTE25]
gi|432420390|ref|ZP_19662948.1| DNA polymerase IV [Escherichia coli KTE178]
gi|432498522|ref|ZP_19740302.1| DNA polymerase IV [Escherichia coli KTE216]
gi|432557297|ref|ZP_19793990.1| DNA polymerase IV [Escherichia coli KTE49]
gi|432693062|ref|ZP_19928277.1| DNA polymerase IV [Escherichia coli KTE162]
gi|432709111|ref|ZP_19944180.1| DNA polymerase IV [Escherichia coli KTE6]
gi|432721852|ref|ZP_19956780.1| DNA polymerase IV [Escherichia coli KTE17]
gi|432726347|ref|ZP_19961230.1| DNA polymerase IV [Escherichia coli KTE18]
gi|432740031|ref|ZP_19974753.1| DNA polymerase IV [Escherichia coli KTE23]
gi|432917226|ref|ZP_20121880.1| DNA polymerase IV [Escherichia coli KTE173]
gi|432924504|ref|ZP_20126791.1| DNA polymerase IV [Escherichia coli KTE175]
gi|432979781|ref|ZP_20168562.1| DNA polymerase IV [Escherichia coli KTE211]
gi|432989343|ref|ZP_20178013.1| DNA polymerase IV [Escherichia coli KTE217]
gi|433095136|ref|ZP_20281354.1| DNA polymerase IV [Escherichia coli KTE139]
gi|433104413|ref|ZP_20290436.1| DNA polymerase IV [Escherichia coli KTE148]
gi|433109432|ref|ZP_20295314.1| DNA polymerase IV [Escherichia coli KTE150]
gi|281177446|dbj|BAI53776.1| DNA polymerase IV [Escherichia coli SE15]
gi|333968270|gb|AEG35075.1| DNA polymerase IV [Escherichia coli NA114]
gi|430918488|gb|ELC39489.1| DNA polymerase IV [Escherichia coli KTE25]
gi|430947555|gb|ELC67252.1| DNA polymerase IV [Escherichia coli KTE178]
gi|431032116|gb|ELD44827.1| DNA polymerase IV [Escherichia coli KTE216]
gi|431094350|gb|ELD99981.1| DNA polymerase IV [Escherichia coli KTE49]
gi|431237204|gb|ELF32204.1| DNA polymerase IV [Escherichia coli KTE162]
gi|431252832|gb|ELF46346.1| DNA polymerase IV [Escherichia coli KTE6]
gi|431268597|gb|ELF60066.1| DNA polymerase IV [Escherichia coli KTE17]
gi|431276455|gb|ELF67475.1| DNA polymerase IV [Escherichia coli KTE18]
gi|431286160|gb|ELF76986.1| DNA polymerase IV [Escherichia coli KTE23]
gi|431447878|gb|ELH28598.1| DNA polymerase IV [Escherichia coli KTE173]
gi|431450145|gb|ELH30637.1| DNA polymerase IV [Escherichia coli KTE175]
gi|431496402|gb|ELH75985.1| DNA polymerase IV [Escherichia coli KTE211]
gi|431498588|gb|ELH77773.1| DNA polymerase IV [Escherichia coli KTE217]
gi|431620014|gb|ELI88902.1| DNA polymerase IV [Escherichia coli KTE139]
gi|431632438|gb|ELJ00726.1| DNA polymerase IV [Escherichia coli KTE150]
gi|431634437|gb|ELJ02678.1| DNA polymerase IV [Escherichia coli KTE148]
Length = 351
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|157159715|ref|YP_001457033.1| DNA polymerase IV [Escherichia coli HS]
gi|193068712|ref|ZP_03049673.1| DNA polymerase IV [Escherichia coli E110019]
gi|293413508|ref|ZP_06656157.1| DNA polymerase IV [Escherichia coli B185]
gi|293418349|ref|ZP_06660784.1| DNA polymerase IV [Escherichia coli B088]
gi|300817250|ref|ZP_07097468.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|300919512|ref|ZP_07136010.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|307313500|ref|ZP_07593121.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|309797859|ref|ZP_07692241.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|331651165|ref|ZP_08352190.1| DNA polymerase IV [Escherichia coli M718]
gi|378714319|ref|YP_005279212.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|386607643|ref|YP_006123129.1| DNA polymerase IV [Escherichia coli W]
gi|386702925|ref|YP_006166762.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|386708073|ref|YP_006171794.1| DNA polymerase IV [Escherichia coli W]
gi|415832818|ref|ZP_11518094.1| DNA polymerase IV [Escherichia coli OK1357]
gi|415879827|ref|ZP_11544933.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|417152597|ref|ZP_11991388.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|417223813|ref|ZP_12027104.1| DNA polymerase IV [Escherichia coli 96.154]
gi|417229975|ref|ZP_12031561.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|417579476|ref|ZP_12230299.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|417600528|ref|ZP_12251113.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|417665320|ref|ZP_12314888.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|419343913|ref|ZP_13885297.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|419348344|ref|ZP_13889697.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|419353246|ref|ZP_13894532.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|419358592|ref|ZP_13899823.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|419363726|ref|ZP_13904908.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|422352008|ref|ZP_16432809.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|432479586|ref|ZP_19721551.1| DNA polymerase IV [Escherichia coli KTE210]
gi|432532438|ref|ZP_19769444.1| DNA polymerase IV [Escherichia coli KTE234]
gi|432677848|ref|ZP_19913277.1| DNA polymerase IV [Escherichia coli KTE142]
gi|432804333|ref|ZP_20038279.1| DNA polymerase IV [Escherichia coli KTE91]
gi|432932589|ref|ZP_20132443.1| DNA polymerase IV [Escherichia coli KTE184]
gi|433090597|ref|ZP_20276906.1| DNA polymerase IV [Escherichia coli KTE138]
gi|433192067|ref|ZP_20376097.1| DNA polymerase IV [Escherichia coli KTE90]
gi|450185316|ref|ZP_21889033.1| DNA polymerase IV [Escherichia coli SEPT362]
gi|189027663|sp|A7ZWJ6.1|DPO4_ECOHS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157065395|gb|ABV04650.1| DNA polymerase IV [Escherichia coli HS]
gi|192958075|gb|EDV88517.1| DNA polymerase IV [Escherichia coli E110019]
gi|291324877|gb|EFE64292.1| DNA polymerase IV [Escherichia coli B088]
gi|291433566|gb|EFF06539.1| DNA polymerase IV [Escherichia coli B185]
gi|300413406|gb|EFJ96716.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|300530226|gb|EFK51288.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|306906668|gb|EFN37179.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|308118543|gb|EFO55805.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|315059560|gb|ADT73887.1| DNA polymerase IV [Escherichia coli W]
gi|323181566|gb|EFZ66986.1| DNA polymerase IV [Escherichia coli OK1357]
gi|323379880|gb|ADX52148.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|324019872|gb|EGB89091.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|331050906|gb|EGI22958.1| DNA polymerase IV [Escherichia coli M718]
gi|342926640|gb|EGU95362.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|345344343|gb|EGW76716.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|345353873|gb|EGW86100.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|378190412|gb|EHX50996.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|378204006|gb|EHX64422.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|378208157|gb|EHX68541.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|378209163|gb|EHX69537.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|378219746|gb|EHX80013.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|383394452|gb|AFH19410.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|383403765|gb|AFH10008.1| DNA polymerase IV [Escherichia coli W]
gi|386169321|gb|EIH35829.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|386198861|gb|EIH97852.1| DNA polymerase IV [Escherichia coli 96.154]
gi|386206465|gb|EII10971.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|397787111|gb|EJK97941.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|431010603|gb|ELD24947.1| DNA polymerase IV [Escherichia coli KTE210]
gi|431064614|gb|ELD73479.1| DNA polymerase IV [Escherichia coli KTE234]
gi|431207759|gb|ELF06005.1| DNA polymerase IV [Escherichia coli KTE142]
gi|431357666|gb|ELG44332.1| DNA polymerase IV [Escherichia coli KTE91]
gi|431456622|gb|ELH36965.1| DNA polymerase IV [Escherichia coli KTE184]
gi|431615609|gb|ELI84735.1| DNA polymerase IV [Escherichia coli KTE138]
gi|431722666|gb|ELJ86631.1| DNA polymerase IV [Escherichia coli KTE90]
gi|449325289|gb|EMD15201.1| DNA polymerase IV [Escherichia coli SEPT362]
Length = 351
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K
Sbjct: 112 LIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRK 171
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK+ +LG+ DL + S + L+ ++G N+G + + ++RGI EVQ
Sbjct: 172 FYGI-GKVTAEKMYQLGIFKGKDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFR 229
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ KS G+ ++F ++ + S + L +L + ++E + L++ + T+TL
Sbjct: 230 IRKSVGAEETF-----VENLTSEVYMLREL-DHIAEDVARRLDKQQVAGKTVTL 277
>gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156060|gb|ADN35440.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 361
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
E++ ++ TCS GI K++AK+ASGMNKPA T V +++ LD LP+ + +
Sbjct: 134 EIKERIFHAEGLTCSVGIGPGKVIAKIASGMNKPAGMTVVRPDAIRDFLDPLPVDAIPGI 193
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L+ G+ T+ DLL +L++++G G + +ARGI EV+ + KS
Sbjct: 194 GKKTKVRLEKH-GIVTIKDLLGCDIQELKDAFG-KHGIMMHRLARGIDDSEVREKEGQKS 251
Query: 252 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
G ++ P + + + L+ LCE + RL
Sbjct: 252 IGKQTTY--PEDVSDTSILLSDLSDLCENVQNRL 283
>gi|418069525|ref|ZP_12706802.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
gi|357536056|gb|EHJ20087.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
Length = 374
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 140/345 (40%), Gaps = 67/345 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A E+CPQ + + P D YR ++ I + E ++DE
Sbjct: 69 VHSAMPAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEA 121
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD D++ ++
Sbjct: 122 YLDVTD-----------------DKKGMQD------------------------------ 134
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L
Sbjct: 135 -----AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFL 189
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+PI++ + +G K + +ELGV DLLK SE+ L +G G L+ RG
Sbjct: 190 KEMPIEQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDD 247
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + KS G +++ P L T V L+ + ++L++ + + K + L
Sbjct: 248 RPVAYQRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLK 303
Query: 301 LHASAFKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 344
L S F++ + +R +F Y AK D F G+R
Sbjct: 304 LRYSDFETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LG+ T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGIYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 141/327 (43%), Gaps = 81/327 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S++ G AK+ CP+I V+ R Y+ S++ I E S+DE
Sbjct: 58 VRSAISGVLAKKYCPEIIFVRPRFDR-------YKEISSKIHKIFHEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++K GN S +
Sbjct: 111 YLDVT------------------------------KNKKGNPSAS--------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V+ L
Sbjct: 126 -------LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K + GK+ T +LG+ T DL S + L++ +G +G + +++ RGI
Sbjct: 179 EDLPIRKFYGV-GKVTTEKMYQLGIFTGTDLKSKSLEFLEKHFG-KSGAFYYHVVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRI---A 296
EV++ + KS + +F ++S + QL ER+ S LE+ KR
Sbjct: 237 SEVKSSRIAKSVAAEHTFD-----VNLSSEIFMMEQL-----ERIASSLEKRLKRYNVSG 286
Query: 297 HTLTLHASAFKSSDSDSRKKFPSKSCP 323
T+TL K SD ++ SK+ P
Sbjct: 287 KTITL-----KIKYSDFSQQTRSKTLP 308
>gi|432541635|ref|ZP_19778496.1| DNA polymerase IV [Escherichia coli KTE236]
gi|432546975|ref|ZP_19783773.1| DNA polymerase IV [Escherichia coli KTE237]
gi|432620356|ref|ZP_19856404.1| DNA polymerase IV [Escherichia coli KTE76]
gi|432813757|ref|ZP_20047568.1| DNA polymerase IV [Escherichia coli KTE115]
gi|431078152|gb|ELD85210.1| DNA polymerase IV [Escherichia coli KTE236]
gi|431085457|gb|ELD91562.1| DNA polymerase IV [Escherichia coli KTE237]
gi|431163277|gb|ELE63711.1| DNA polymerase IV [Escherichia coli KTE76]
gi|431368776|gb|ELG55007.1| DNA polymerase IV [Escherichia coli KTE115]
Length = 351
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568885|gb|AAL91954.1|AF483091_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|335356977|ref|ZP_08548847.1| DNA polymerase IV [Lactobacillus animalis KCTC 3501]
Length = 360
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L VL L+ ++ ET+ TCS G+++NK LAKLAS KP T V VK L
Sbjct: 121 LGSAVLTAHRLQQRIYDETQLTCSIGVSYNKFLAKLASDFCKPVGMTVVRPEEVKAFLFP 180
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K + +G K + + LG+ DL SE L + +G GT L+ RGI
Sbjct: 181 LPIEKFRGVGKKTAPKM-HALGIEKGEDLYAKSERYLNKHFG-KIGTVLYQQVRGIDERP 238
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ R KS G+ ++F P V+ Q +N +L+ RL +L ++ TL L
Sbjct: 239 VEVR-ERKSIGTERTFIRP----LVSEAQ--VNDEFRQLATRLAKELNNKQKHGKTLVL 290
>gi|419699174|ref|ZP_14226796.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|422378507|ref|ZP_16458714.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|432731001|ref|ZP_19965840.1| DNA polymerase IV [Escherichia coli KTE45]
gi|432758061|ref|ZP_19992584.1| DNA polymerase IV [Escherichia coli KTE46]
gi|324010201|gb|EGB79420.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|380349696|gb|EIA37962.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|431278405|gb|ELF69395.1| DNA polymerase IV [Escherichia coli KTE45]
gi|431311847|gb|ELF99994.1| DNA polymerase IV [Escherichia coli KTE46]
Length = 351
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RAVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 136/328 (41%), Gaps = 73/328 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK CPQI VQ R K ++S I +++
Sbjct: 58 VRSAMSSVMAKRNCPQITFVQPRFERYK-EISQ---------------------KIRKIF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE +++ +K GN S +
Sbjct: 96 YDYTDLVE-------PLSLDE-------AYLDVTVNKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ E SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 126 ------LIAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L I+K + GK+ T +LG+ T DL + SE L E++G +G + +++ RG+
Sbjct: 180 KLEIRKFYGV-GKVTTEKMYKLGIFTGFDLKQKSEIFLTENFG-KSGGYYYHVVRGVHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ +PKS G+ ++F L + + L + EL RL K I TL +
Sbjct: 238 AVKPHRIPKSVGAERTF--SENLSSEIFMLERLEHIATELERRLKKSTISGKTI--TLKI 293
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTA 329
S F ++S LRY A
Sbjct: 294 KYSDF---------TLQTRSKTLRYYIA 312
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 102/244 (41%), Gaps = 62/244 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M A+ +CPQ V VP D + YR ++ I R E S+DE
Sbjct: 56 VHSAMSAVRAQRLCPQA--VYVP-----PDFNRYREVSRQIRQIFGRHTDLIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T + LGL S
Sbjct: 109 YLDVT------------------------VNKLGLPS----------------------- 121
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ +R Q+ ET T SAG+A NK LAK+AS NKP Q + S V L
Sbjct: 122 -----ATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSRVLEFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP++K+ +G + L+ +LG+ TVGDL + +L+ +G G L+ +ARGI
Sbjct: 177 QPLPVRKVPGVGKVMQARLE-QLGIHTVGDLATHAAQELEHYFG-RYGRRLYELARGIDD 234
Query: 241 EEVQ 244
EVQ
Sbjct: 235 REVQ 238
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 148/309 (47%), Gaps = 32/309 (10%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEV 60
V ++M G AK++CP LV VP + YR SE+ I A S+DE
Sbjct: 146 VRAAMPGFIAKKLCPN--LVIVPT-----NFDKYRAVSSEIREIFADYDPNFMPMSLDEA 198
Query: 61 YLDLTDAAEAMLAETPPESL-DEVDE--EALKSHILGLESKDGNDSKATVKEWLCRCDAD 117
YLD T+ E ++ P+SL DE +E + + L +DS ++ LC DA
Sbjct: 199 YLDFTEHLEKR--QSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSS---SLCCEDAG 253
Query: 118 HRDKLLACGVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS-- 174
++ V V E+R ++ ++T T SAGIA N MLAK+ S NKP Q +P +
Sbjct: 254 SAFEIFGTSVEEAVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTRE 313
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW--LW 232
+V + +LP++K+ + GK+ L N LG+++ L + S F+ W
Sbjct: 314 AVMEFVCNLPVRKVSGI-GKVSEKLLNALGISSCSHL---GQKMALLSLLFSETAWHHFL 369
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
++ G+ + +P+ H KS R K +++ + L+ LC EL E L +DL++
Sbjct: 370 QVSLGLG-----SAFIPR-HEERKSMSTERTFKEMSAAEEQLS-LCRELCEDLANDLKKE 422
Query: 293 KRIAHTLTL 301
T+TL
Sbjct: 423 GLKGKTVTL 431
>gi|340714323|ref|XP_003395679.1| PREDICTED: DNA polymerase iota-like isoform 1 [Bombus terrestris]
gi|340714325|ref|XP_003395680.1| PREDICTED: DNA polymerase iota-like isoform 2 [Bombus terrestris]
Length = 575
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 140/323 (43%), Gaps = 33/323 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA ++CP++ LV DL++YR+ ++V+ IL + ER +D+ ++D+
Sbjct: 75 MSVQEALQLCPELVLV------NGEDLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDV 128
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV--KEWLCRCDADHRDKL 122
T + + L+ L + +D N E C C R
Sbjct: 129 TSIVQKYMNSGNNSELN-----------LSINMEDENPVGKVFGPSEEECPCGCHAR--- 174
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QT V S L +
Sbjct: 175 LIIASKIAAEIRERIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLST 234
Query: 183 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+ + K+ +G K L + + TV DL K + L+ G + L + A GI
Sbjct: 235 IGSVSKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDET 293
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ +S G F +++ VA V+ L L L+E D IA LT+
Sbjct: 294 VVKPTGKRQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPIAMRLTV 348
Query: 302 HASAFKSSDSDSRKKFPSKSCPL 324
F + S R+ ++ C L
Sbjct: 349 RKHDFNKTTSGKRE---TRQCAL 368
>gi|300902538|ref|ZP_07120515.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|301302018|ref|ZP_07208151.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|415865924|ref|ZP_11538633.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|417168586|ref|ZP_12001037.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|417637524|ref|ZP_12287701.1| DNA polymerase IV [Escherichia coli TX1999]
gi|419168270|ref|ZP_13712668.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|419179263|ref|ZP_13722888.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|419186030|ref|ZP_13729551.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|419190061|ref|ZP_13733529.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|420383905|ref|ZP_14883294.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|427803303|ref|ZP_18970370.1| damage-inducible protein P [Escherichia coli chi7122]
gi|427807907|ref|ZP_18974972.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|432452995|ref|ZP_19695240.1| DNA polymerase IV [Escherichia coli KTE193]
gi|433031645|ref|ZP_20219465.1| DNA polymerase IV [Escherichia coli KTE112]
gi|433128532|ref|ZP_20314017.1| DNA polymerase IV [Escherichia coli KTE163]
gi|433133434|ref|ZP_20318817.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443616243|ref|YP_007380099.1| DNA polymerase IV [Escherichia coli APEC O78]
gi|300405351|gb|EFJ88889.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|300842570|gb|EFK70330.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|315253713|gb|EFU33681.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|345395654|gb|EGX25396.1| DNA polymerase IV [Escherichia coli TX1999]
gi|378018676|gb|EHV81522.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|378027724|gb|EHV90349.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|378031454|gb|EHV94042.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|378042164|gb|EHW04613.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|386170634|gb|EIH42687.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|391309729|gb|EIQ67394.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|412961485|emb|CCK45390.1| damage-inducible protein P [Escherichia coli chi7122]
gi|412968086|emb|CCJ42699.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|430974983|gb|ELC91888.1| DNA polymerase IV [Escherichia coli KTE193]
gi|431560897|gb|ELI34402.1| DNA polymerase IV [Escherichia coli KTE112]
gi|431652088|gb|ELJ19251.1| DNA polymerase IV [Escherichia coli KTE163]
gi|431663249|gb|ELJ30011.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443420751|gb|AGC85655.1| DNA polymerase IV [Escherichia coli APEC O78]
Length = 351
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|297794885|ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
Length = 1105
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+ + +R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+
Sbjct: 492 FLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDGLPVGT 551
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L + + T G L S+D LQ+ +G TG LW+ +RG+ V A
Sbjct: 552 LPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQ 610
Query: 248 LPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
KS G+ G F + + + VQH+L LC+E+S R L+ + I T TL
Sbjct: 611 ESKSIGAEVNWGVRFRDQQDVCIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKI 664
Query: 304 SAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSG 361
K+ + K C R T D + Q ++ GSF + + G
Sbjct: 665 KKRKNDAEEPTKYMGCGDCDNLSRSITVPAATDDVEVLQRISKKLFGSFCLDVKEVRGVG 724
Query: 362 WRITAL 367
+++ L
Sbjct: 725 LQVSKL 730
>gi|304385242|ref|ZP_07367587.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
gi|304328449|gb|EFL95670.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
Length = 377
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 140/345 (40%), Gaps = 67/345 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A E+CPQ + + P D YR ++ I + E ++DE
Sbjct: 72 VHSAMPAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEA 124
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD D++ ++
Sbjct: 125 YLDVTD-----------------DKKGMQD------------------------------ 137
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L
Sbjct: 138 -----AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFL 192
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+PI++ + +G K + +ELGV DLLK SE+ L +G G L+ RG
Sbjct: 193 KEMPIEQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDD 250
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + KS G +++ P L T V L+ + ++L++ + + K + L
Sbjct: 251 RPVAYQRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLK 306
Query: 301 LHASAFKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 344
L S F++ + +R +F Y AK D F G+R
Sbjct: 307 LRYSDFETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP++++V D +Y A + S IL+ G + SIDE +D+
Sbjct: 430 MKG--ALQTCPELKVVPY-------DFPAYEEASRKFYSAILSVDGIVQSVSIDEALVDI 480
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T LE+ G+D + + L R A +
Sbjct: 481 TTQC--------------------------LEA-GGSDGRGISEGSLYREQARADE---- 509
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
+ +LR V KET S GI N +LAK+A KPA Q + +V + +L
Sbjct: 510 ----VADDLRATVKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIGNLT 565
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LGT L++ LGV V D+ + + D+L S G TG +W ARGI EV
Sbjct: 566 VQDLPGVGYSLGTKLED-LGVKIVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRTEVG 624
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 625 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 673
>gi|219116476|ref|XP_002179033.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409800|gb|EEC49731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 592
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 15/257 (5%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLC 112
ERASIDE +LD+T+ ES +V + + + G + ++ + L
Sbjct: 142 ERASIDEFFLDVTNVCYL-------ESTLDVCDLGSNNSLEGALQETAVVGQSEIMT-LV 193
Query: 113 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
R D + L G + +R +V FT SAGI NK +AKL++ KP Q
Sbjct: 194 RNGMDVDVEALQRGAHLARCIRDEVRTLLGFTLSAGIGSNKTIAKLSAAYGKPNGQAITY 253
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL---GVTTVGDLLKF-SEDKLQESYGFNTG 228
V LL I+K + LGGKLG ++Q L TTV + K+ S L++ + T
Sbjct: 254 PQFVDTLLADTEIRKCRNLGGKLGKTVQALLPADAPTTVHSIAKYLSLPTLEQHFEAPTA 313
Query: 229 TWLWNIARGISGEEVQAR---LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
W++ +ARG+ E V ++ L KS + KS P S+ W+ L +E+ R+
Sbjct: 314 AWVYRVARGVDTEPVASKNESALTKSITAFKSLPFDVQGHDWESLASWIRLLADEIVSRV 373
Query: 286 CSDLEQNKRIAHTLTLH 302
D +N R + T+
Sbjct: 374 ERDASRNGRYPKSCTIQ 390
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 82 VHSAMSSKEAYERCPQAVFIS-------GNYQKYRKVGMQIREIFKRYTDLVEPMSIDEA 134
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 135 YLDVTENK------------------------LGIKS----------------------- 147
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + +E TCSAG+++NK LAKLAS KP T + + L
Sbjct: 148 -----ALKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFL 202
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G + L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 203 EKLPIEKFYGVGKRSVEKL-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISN 260
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAH 297
V++ + KS GS +++ + + + + E+S +R+ L++N ++
Sbjct: 261 SPVKSNRIRKSIGSERTY---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGR 311
Query: 298 TLTL 301
T+ L
Sbjct: 312 TIVL 315
>gi|19568913|gb|AAL91968.1|AF483105_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 47 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 99
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 100 YLDVTDSVH------------------------------------------CHGSA---- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 114 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 167
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ P+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 168 QTFPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 225
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 226 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKSDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|332281409|ref|ZP_08393822.1| DNA polymerase IV [Shigella sp. D9]
gi|417627167|ref|ZP_12277415.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|432748683|ref|ZP_19983307.1| DNA polymerase IV [Escherichia coli KTE29]
gi|332103761|gb|EGJ07107.1| DNA polymerase IV [Shigella sp. D9]
gi|345378609|gb|EGX10537.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|431300789|gb|ELF90337.1| DNA polymerase IV [Escherichia coli KTE29]
Length = 351
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|383862079|ref|XP_003706511.1| PREDICTED: DNA polymerase iota-like [Megachile rotundata]
Length = 565
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 31/322 (9%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA ++CP + LV DL++YR+ +++ +L + ER D+ +LD
Sbjct: 65 MSVQEALKLCPGLNLVN------GEDLTNYRHFSDKILEVLHQFTPLVERLGFDDNFLDA 118
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHI-LGLESKDGNDSKATVKEWLCRCDADHRDKLL 123
T + + ++ +E L I + E+ G + +E C C A L
Sbjct: 119 TSLVQ--------KYMNPGNESDLNMSISMEDETPIGEVFGSVEEECPCGCHAR-----L 165
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
I E+R ++ KE TCSAGIAHNK+LAKL ++KP QQT + + LL S+
Sbjct: 166 IIATKIAAEIRQRIHKELHVTCSAGIAHNKLLAKLVGSLHKPNQQTLIFPCNAPALLSSI 225
Query: 184 -PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
+ K+ +G K T L + TV DL K + L+ G + L + A G+
Sbjct: 226 GSVSKIPGVGQK-TTQLLLSNNIKTVDDLRKTPLETLEGKIGVDLARKLKDNAEGVDETV 284
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
V+ +S G F +++ VA V+ L L L+E D +A LT+
Sbjct: 285 VKPTGKKQSIGLEDGF---KSVSLVAEVESRLGVLLRRLTELAMED--GRIPVAMRLTVR 339
Query: 303 ASAFKSSDSDSRKKFPSKSCPL 324
F S R+ ++ C L
Sbjct: 340 KHDFNKPSSGKRE---TRQCAL 358
>gi|307203609|gb|EFN82638.1| DNA polymerase iota [Harpegnathos saltator]
Length = 581
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 35/292 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M+ EA +CP + LV DL++YR+ +++ IL + ER D+ +LD+
Sbjct: 65 MQVQEALRLCPGLVLV------NGEDLTNYRHYSTKISDILHQFTPLVERLGFDDNFLDV 118
Query: 65 TDAAEAMLA-------ETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 117
+ E L + S+DE+ +E++ S I G ++ C C
Sbjct: 119 SLVVEKHLKPQNDSELDMSGSSMDEILKESV-SKIFGPSEEE------------CPCGCH 165
Query: 118 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 177
R L + E+R ++ +E TCS GIAHNK+LAKLA +NKP QQT + S
Sbjct: 166 VR---LIIASKLAAEIRNRIFQELHLTCSVGIAHNKLLAKLAGSLNKPNQQTLIFPCSGP 222
Query: 178 GLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
LL ++ I K+ +G K L + + TV DL + L+ G + L + A
Sbjct: 223 MLLSAMGSISKIPGVGQKTMELLLSN-NIRTVDDLRRIPLQNLELKIGVDLARKLKDNAE 281
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
GI V+ +S G F +++ VA V+ L L L+E D
Sbjct: 282 GIDETAVKPSGKKQSIGLEDGF---KSVSLVAEVESRLGGLLRRLTEMAMED 330
>gi|379705975|ref|YP_005204434.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374682674|gb|AEZ62963.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 363
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ IL R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYREIGMQIREILRRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G +K+ +K
Sbjct: 119 YLDVT------------------------------ENKRG--TKSAIK------------ 134
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I ++ + +E TCSAG+++NK LAKLAS +KP T V + L
Sbjct: 135 --------IAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS
Sbjct: 187 KKLPIEKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS +++ + L A ++ +++ + R+ L +N ++ +
Sbjct: 245 SPVRPNRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>gi|270290971|ref|ZP_06197194.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
gi|270280367|gb|EFA26202.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
Length = 374
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 140/345 (40%), Gaps = 67/345 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A E+CPQ + + P D YR ++ + + E ++DE
Sbjct: 69 VHSAMPAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHVFHEFTDKIETVALDEA 121
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD D++ ++
Sbjct: 122 YLDVTD-----------------DKKGMQD------------------------------ 134
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L
Sbjct: 135 -----AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFL 189
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+PI++ + +G K + +ELGV DLLK SE+ L +G G L+ RG
Sbjct: 190 KEMPIEQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDD 247
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + KS G +++ P L T V L+ + ++L++ + + K + L
Sbjct: 248 RPVAYQRERKSIGKEETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLK 303
Query: 301 LHASAFKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 344
L S F++ + +R +F Y AK D F G+R
Sbjct: 304 LRYSDFETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|150863740|ref|XP_001382310.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
gi|149384996|gb|ABN64281.2| DNA polymerase eta subunit [Scheffersomyces stipitis CBS 6054]
Length = 733
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 133/308 (43%), Gaps = 48/308 (15%)
Query: 26 ARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEA-------MLAE--- 74
A K L YR ++V I + E+AS+DE YLDL +LAE
Sbjct: 132 ATHKVSLDPYRRESRKIVKIFQQHCDLVEKASVDESYLDLGRLVYKKLLSLFPLLAEGQD 191
Query: 75 ---------TPPESLD-------EVDEEAL--KSHILGLESKDGNDSKATVKEWLCRCDA 116
T PE L +EE L + I+ L S+ + T+ +W C
Sbjct: 192 SDYMPSLPDTLPEELQFRGVVIKSTEEENLIQNNTIMSL-SQQFPEGPPTIGDWDDVC-- 248
Query: 117 DHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV 176
+ G +IV ++R + E +T SAGIA NK +AKLA G KP Q + S
Sbjct: 249 ------MLIGSMIVLDIRKALYDEMGYTTSAGIASNKQVAKLAGGFKKPDNQCVIRNRST 302
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNEL------GVTTVGDLLKFSEDKLQESYGFNT--G 228
L++ + + +GGK G + +L G++ + + F+ + ++E + +
Sbjct: 303 YSFLNNFELNDVTSMGGKTGDFVLQKLRVPPDKGISYIRE--NFTLEAIEEEFNDDIPLA 360
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
++ I RG E+ R+ KS S K+F ++T++ W+ +L R+
Sbjct: 361 KKIYEIVRGNHRRELVNRMDVKSMMSRKNFLAKHPVETLSDADSWIKVFAGDLYNRMIEL 420
Query: 289 LEQNKRIA 296
E+N R++
Sbjct: 421 DEENLRLS 428
>gi|171779234|ref|ZP_02920205.1| hypothetical protein STRINF_01082 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282290|gb|EDT47717.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 364
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ IL R E SIDE
Sbjct: 67 VHSAMSSKEAYERCPQAIFIS-------GNYQKYREIGMQIREILRRYTDLVEPMSIDEA 119
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G +K+ +K
Sbjct: 120 YLDVT------------------------------ENKRG--TKSAIK------------ 135
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I ++ + +E TCSAG+++NK LAKLAS +KP T V + L
Sbjct: 136 --------IAKMIQYDIWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFL 187
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G K L +++GV T DLL+ E L + +G G L+ ARGIS
Sbjct: 188 KKLPIEKFHGVGKKSVEKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISN 245
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS +++ + L A ++ +++ + R+ L +N ++ +
Sbjct: 246 SPVRPNRIRKSIGSERTY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVV 299
Query: 301 L 301
L
Sbjct: 300 L 300
>gi|340386730|ref|XP_003391861.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 427
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 154/372 (41%), Gaps = 90/372 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V ++M G AK++CPQ+ +V K+ S Y+ V IL+ +DE
Sbjct: 36 VRAAMPGFIAKKLCPQLVIV-------KSHFSKYQEVSQTVREILSNYDPLFSSVGLDEA 88
Query: 61 YLDLTDAAEAM------------------------------------------LAETPPE 78
YLD+T+ + L + PE
Sbjct: 89 YLDITEYVTELMRGKEEQVPVEGEDRVTQSFGDSSVENTESLKHSLVHQTDTKLIQIDPE 148
Query: 79 SLDEVDEEALK-----SHILGLESKDG-----NDSKATVKEWLCRCDADH--RDKLLACG 126
S E D + L+ SH ++ + G ND+ + L CD+D + C
Sbjct: 149 SSQETDTKLLQIDDPESHSTDMKLQYGSSESLNDTDLHQSDDLV-CDSDQCLPNSYWECA 207
Query: 127 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL--LDSLP 184
+V E+R ++ T+ T SAGIA NKMLAK+AS MNKP Q +P S K L + LP
Sbjct: 208 ERVVNEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLP 267
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNIARGISGE 241
I+K+ + GK+ + N LG+ T D+ DK L+ + + + NI GI
Sbjct: 268 IRKVSGI-GKVTEKMLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNICLGIGSC 322
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLEQN--KRI 295
V + KS + ++FP W L Q C +L L ++E++ K
Sbjct: 323 TVHSEWERKSISTERTFPDI-----------WKPSELFQKCHKLCYSLTEEVEESNIKGK 371
Query: 296 AHTLTLHASAFK 307
TL L SAF+
Sbjct: 372 TVTLKLKTSAFE 383
>gi|427439515|ref|ZP_18924170.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
gi|425788351|dbj|GAC44958.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
Length = 377
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 139/345 (40%), Gaps = 67/345 (19%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A E+CPQ + + P D YR ++ I + E ++DE
Sbjct: 72 VHSAMPAAKALELCPQ-AVFKTP------DFEKYRAVSDQIHHIFHEFTDKIETVALDEA 124
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD D++ ++
Sbjct: 125 YLDVTD-----------------DKKGMQD------------------------------ 137
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
VLI E++ ++ T+ TCS GI++NK LAK+AS KP + V L
Sbjct: 138 -----AVLIAHEIQKRIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFL 192
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+PI++ + +G K + +ELGV DLLK SE+ L +G G L+ RG
Sbjct: 193 KEMPIEQFRGVGKKTIPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDD 250
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + KS G +++ P L T V L + ++L++ + + K + L
Sbjct: 251 RPVAYQRERKSIGKEETYGKP--LVTENEVDQRLRLIAKKLAQAVTKRQKHGKTL--VLK 306
Query: 301 LHASAFKS-SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 344
L S F++ + +R +F Y AK D F G+R
Sbjct: 307 LRYSDFETLTKRITRPEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|211065519|ref|NP_001122409.2| polymerase (DNA directed) iota [Nasonia vitripennis]
Length = 635
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 129/295 (43%), Gaps = 21/295 (7%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V M +EA +CP + LV+ DL+ YR ++++ +L + E+ +DE
Sbjct: 71 VKKCMLIEEALRLCPSLILVK------GEDLTPYRRMSAKILELLHQFTSSVEKLGLDEN 124
Query: 61 YLDLTDAAEAMLAETPPESLD-EVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
++D+T S + DE + ++ +D + K E C C
Sbjct: 125 FIDVTSVVNEYTTRIGNNSKSSQHDENTTREESTFVQQEDMDHCMPVGKIFSTPEEECPC 184
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV-PF 173
R LA I ++R ++L E TCSAGIAHNK+LAKL +NKP QQT V P
Sbjct: 185 GCHTR---LAVASSIAMDMRSKILNELGLTCSAGIAHNKLLAKLGGAVNKPNQQTVVYPC 241
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
S+ L + K+ +G + SL + TV D+ K ++LQ G + +
Sbjct: 242 SAASLLSSLGSVSKIPGVGRRTAESLTAN-NILTVDDVRKTPLERLQVKIGKELARKIKD 300
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
A GI V+ P+S G F + + V V+ L+ L L+E D
Sbjct: 301 YAEGIDDTPVKPSGRPQSIGLEDGF---KKVSLVDEVESRLSALLRRLTELAAED 352
>gi|419134618|ref|ZP_13679427.1| DNA polymerase IV [Escherichia coli DEC5E]
gi|377988341|gb|EHV51519.1| DNA polymerase IV [Escherichia coli DEC5E]
Length = 351
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ P+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTFPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFNLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|215485381|ref|YP_002327812.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312964711|ref|ZP_07778962.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|417754070|ref|ZP_12402165.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|418995265|ref|ZP_13542884.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|419000425|ref|ZP_13547987.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|419005962|ref|ZP_13553418.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|419011786|ref|ZP_13559154.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|419016730|ref|ZP_13564056.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|419022310|ref|ZP_13569558.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|419027236|ref|ZP_13574436.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|419033383|ref|ZP_13580481.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|419038018|ref|ZP_13585078.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
gi|215263453|emb|CAS07774.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312290732|gb|EFR18610.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|377850207|gb|EHU15174.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|377850763|gb|EHU15718.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|377853915|gb|EHU18805.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|377864039|gb|EHU28837.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|377866704|gb|EHU31468.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|377868792|gb|EHU33519.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|377879016|gb|EHU43589.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|377883802|gb|EHU48320.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|377885738|gb|EHU50229.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|377898262|gb|EHU62622.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
Length = 351
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YL++TD+ C A
Sbjct: 106 YLEVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 138/323 (42%), Gaps = 73/323 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S++ G AK+ CP+I V R + D Y+ S++ I E S+DE
Sbjct: 58 VRSAISGVLAKKYCPEIIFV-----RPRFD--RYKEISSKIHKIFHEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++K GN S +
Sbjct: 111 YLDVT------------------------------QNKKGNPSAS--------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L+ E+R ++ E T SAGI+ NK +AK+AS +NKP Q TV + L
Sbjct: 126 -------LLAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDEIIPFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K + GK+ T +LG+ T DL S + L++ +G +G + +++ RGI
Sbjct: 179 EELPIRKFYGV-GKVTTEKMYQLGIFTGSDLKSKSLEFLEKHFG-KSGAFYYSVVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ + KS + +F ++S L QL ER+ LE+ + H ++
Sbjct: 237 SEVKPHRITKSVAAEHTFD-----VNLSSEIFMLEQL-----ERIAVSLEKRLK-RHNVS 285
Query: 301 LHASAFKSSDSDSRKKFPSKSCP 323
K SD ++ SK+ P
Sbjct: 286 GKTVTLKIKYSDFTQQTRSKTLP 308
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVVALLQDHKKLGKTIVL 299
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
TE+R +L ET T SAG+++NK LAKLAS M KP Q +P + +LP+KK
Sbjct: 128 TEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGAEFIATLPVKKFHG 187
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 250
+G + N LG+ T DL S + LQ +G +G W + IARG V+ K
Sbjct: 188 IGPVTAAKM-NALGIQTGADLRSQSIEFLQRQFG-KSGAWYYAIARGEDDRPVEPNRPRK 245
Query: 251 SHGSGKSFPGPRAL 264
S GS +F R +
Sbjct: 246 SSGSETTFSEDRVI 259
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E++ + +ET T SAG++ NK LAK+ASG++KP + V + + LPI+K
Sbjct: 122 IAREIKGLIHQETHLTASAGVSINKFLAKMASGLDKPNGLSLVAPDQAEAFVQQLPIEKF 181
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGAELRQWSEPSLVRQFG-KVGHYYYGIARGIDERPVIANRI 239
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ +SF ++ + + +L + ++ ++ L +N+R HTLTL
Sbjct: 240 RKSIGAERSF-----FPDISGLPVLMEEL-DAIAAQVHLRLAENQRSGHTLTL 286
>gi|425420882|ref|ZP_18802115.1| DNA polymerase IV [Escherichia coli 0.1288]
gi|408348030|gb|EKJ62165.1| DNA polymerase IV [Escherichia coli 0.1288]
Length = 351
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QILPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|332527775|ref|ZP_08403814.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332112171|gb|EGJ12147.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 432
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 54/287 (18%)
Query: 15 CPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAE 74
CPQ L+ + ++ A +E+ ++ +G IDE+Y+DLT E
Sbjct: 90 CPQAVLLPTDFDEYRRYSRRFKAAVAEIAPVIEDRG------IDEIYIDLT--------E 135
Query: 75 TPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELR 134
P G + G+D V+ + E+R
Sbjct: 136 VP-----------------GAQDAVGHDPAGGVRA-------------------VAQEIR 159
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 194
V + T +CS G+ NK+LAK+AS ++KP + V + + + LP++++ +G K
Sbjct: 160 NNVRRTTGLSCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIWPLPVRRINGIGPK 219
Query: 195 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 254
G L LGV T+GDL LQE +G + G WL + A G V P S
Sbjct: 220 AGAKLA-ALGVATIGDLATRERAWLQEHFGRSYGAWLHDAAHGQDDRPVVTHSEPVSVSR 278
Query: 255 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+F R L V + L + +L+ER+ +DL++ A T+ +
Sbjct: 279 ETTF--ERDLHAVQD-RARLTAVFTDLAERVAADLQRKGYAARTIGI 322
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+RM++L+ T T S GI+ NK LAK+AS NKP Q T+ V L+ L IKK
Sbjct: 121 LIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G K + + LG+ T DL S + L E +G G ++I RG+S V+
Sbjct: 181 FFGIGKKTADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G+ ++F L + ++ L+ L EELS RL
Sbjct: 239 TIKSVGTERTF--DENLSSEVFIETKLDILVEELSLRL 274
>gi|424107414|ref|ZP_17842022.1| DNA polymerase IV [Escherichia coli 93-001]
gi|390670609|gb|EIN47151.1| DNA polymerase IV [Escherichia coli 93-001]
Length = 343
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 45 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 97
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 98 YLDVTDSVH------------------------------------------CHGSA---- 111
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L
Sbjct: 112 ------TLIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFL 165
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 166 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 223
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 224 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|332522339|ref|ZP_08398591.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
gi|332313603|gb|EGJ26588.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
Length = 364
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYDKYREVGLKIRQIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKLG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L V I ++ + KE TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --LTSAVKIAKLIQYDIWKELHLTCSAGISYNKFLAKLASDFEKPHGLTLILPDQAQPFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +E+GV DLL SE L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGIKSVEKL-HEMGVYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISY 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+A + KS GS +++
Sbjct: 245 SPVKANRIRKSIGSERTY 262
>gi|224105631|ref|XP_002313880.1| predicted protein [Populus trichocarpa]
gi|222850288|gb|EEE87835.1| predicted protein [Populus trichocarpa]
Length = 1191
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 11/243 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ + +R ++ T T SAGIA N ++A+LA+ KP Q +P SV L LPIK
Sbjct: 558 LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKA 617
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L+ + V T G L S++ LQ+ +G TG LWN +RG+ V
Sbjct: 618 LPGIGHVLEEKLKKQ-NVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQ 676
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAF 306
K+ G+ ++ G R K + Q +L LC+E+S RL Q R+ T TL
Sbjct: 677 ESKTIGAEVNW-GVR-FKDLQDSQCFLLNLCKEVSFRL-----QGCRVQGRTFTLKIKKR 729
Query: 307 KSSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRI 364
+ + K C L + T I D Q ++ GSF + + G ++
Sbjct: 730 RKDAGEPAKYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQV 789
Query: 365 TAL 367
+ L
Sbjct: 790 SKL 792
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 58/313 (18%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASIDE 59
V ++M G AK++CP +LV VP + YR +V IL + C S+DE
Sbjct: 167 VRAAMPGFIAKKLCP--DLVIVPT-----NFDKYRQVSKDVKEILLQYDPNMCP-MSLDE 218
Query: 60 VYLDLTD-AAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 118
YLD+T AE + ++ D E + G++++D
Sbjct: 219 AYLDITQHLAERKNFDAEQKTFRTADGE---QRMFGVDAED------------------- 256
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SV 176
+V E+R ++ +T+ T SAGIA N MLAK+ S NKP Q +PF+ +V
Sbjct: 257 ----------VVQEIRFRIEVKTQLTASAGIAPNMMLAKVCSDFNKPNGQYLIPFNRQAV 306
Query: 177 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 236
+ LP++K+ + G++ S+ +GV T DL + L + Y + + ++
Sbjct: 307 MDFVKDLPVRKVCGI-GRVSCSMLGAMGVVTCSDLFR-KRGLLLKLYSAISFNYFLRVSA 364
Query: 237 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH--WLNQLCEELSERLCSDLEQNKR 294
G+ VQ KS + ++F A + L C EL E L DL++
Sbjct: 365 GVGSTSVQRGDDRKSMSTERTF---------AEINRPAELFAKCYELCEALVEDLKKENL 415
Query: 295 IAHTLTLHASAFK 307
T+TL K
Sbjct: 416 KGKTITLKIKTIK 428
>gi|444983740|ref|ZP_21300613.1| DNA polymerase IV [Escherichia coli PA11]
gi|444600772|gb|ELV75593.1| DNA polymerase IV [Escherichia coli PA11]
Length = 351
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|425107620|ref|ZP_18509892.1| DNA polymerase IV [Escherichia coli 6.0172]
gi|408561085|gb|EKK37328.1| DNA polymerase IV [Escherichia coli 6.0172]
Length = 312
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 14 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 66
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 67 YLDVTDSVH------------------------------------------CHGSA---- 80
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L
Sbjct: 81 ------TLIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFL 134
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 135 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 192
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 193 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 125/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS GS +++ + L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 247 VKPNRIRKSIGSERTY--AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|356495829|ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
Length = 1115
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 10/249 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ + +R ++ K T T SAGIA N ++A++A+ KP Q + V+ L LPI
Sbjct: 497 LLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLCQLPINA 556
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L+ + V T G L S+ LQ+ YG TG LW +RGI V
Sbjct: 557 LPGIGYVLQEKLKKQ-NVHTCGQLRMISKASLQKDYGMKTGEMLWIYSRGIDNRLVGGFQ 615
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
KS G+ ++ G R K + +H+L LC+E+S RL Q + T TL +
Sbjct: 616 ESKSVGADVNW-GVR-FKDIKDCEHFLINLCKEVSLRLQGCGVQGR----TFTLKIKKRR 669
Query: 308 SSDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 365
+ + K C L + T + D + Q +++ LG F + + G ++
Sbjct: 670 KNADEPAKFMGCGDCENLSHSVTIPVATDNVEILQRIVKQLLGCFYIDVKEIRGIGLHVS 729
Query: 366 AL-SVSASK 373
L S ASK
Sbjct: 730 RLESAEASK 738
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 10 EAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSIL-ARKG-R 51
+A E CP +++ V A G K L YR A ++ IL + G
Sbjct: 58 DALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGVE 117
Query: 52 CERASIDEVYLDLTDAAE------AMLAETPPESLDEVDEEAL------KSHILGLESKD 99
E+ S+DE +LD+T AA +L+ L++V + ++ I +
Sbjct: 118 VEKGSVDEAFLDVTKAAHMKQGEMGLLSSQGELRLEDVADPTTIVIPSRQAEIAAWLKEH 177
Query: 100 GNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 159
G + L LLA +V +R ++ E + CSAGIAHNK+LAK
Sbjct: 178 GREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKSI 237
Query: 160 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG---------VTTVGD 210
S +KP QQT + V ++ LP K ++ GGK G ++ G + ++
Sbjct: 238 SARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLCA 297
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+ KF E Y + RG +++ R + KS + K+F P + T V
Sbjct: 298 MSKFFESVGDAEYAYRR-------LRGYDEGKIRERSISKSLMASKAFSPPSS--TANGV 348
Query: 271 QHWLNQLCEELSER 284
Q W+ L ELS R
Sbjct: 349 QKWVTVLSGELSAR 362
>gi|383759505|ref|YP_005438490.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
gi|381380174|dbj|BAL96991.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
Length = 432
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 54/300 (18%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S M +A + CPQ L+ + ++ A +E+ ++ +G IDE+Y
Sbjct: 77 VHSGMGLMKAAQRCPQAVLLPTDFDEYRRYSRLFKAAVAEIAPVIEDRG------IDEIY 130
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+DLT+ + G + G+D V+
Sbjct: 131 IDLTE-------------------------VPGAQDAVGHDPAGGVRA------------ 153
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ E+R V + T CS G+ NK+LAK+AS ++KP + V + + +
Sbjct: 154 -------VAQEIRNNVRRTTGLVCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIW 206
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP++++ +G K G L LGV T+GDL LQE +G + G WL A G
Sbjct: 207 PLPVRRINGIGPKAGARLA-ALGVATIGDLAMRERAWLQEHFGRSYGAWLHEAAHGQDDR 265
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V P S +F R L V + L + L+ER+ +DL++ A T+ +
Sbjct: 266 PVVTHSEPVSVSRETTF--ERDLHAVQD-RAQLTAVFTHLAERVAADLQRKGYAARTIGI 322
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 10 EAKEVCPQIELVQVPV-ARG---------------KADLSSYRNAGSEVVSIL-ARKG-R 51
+A E CP +++ V A G K L YR A ++ IL + G
Sbjct: 58 DALEKCPHVKISHVATYAAGEVEYRYHENPSKQTHKVALEPYREASRKIFRILDSFDGVE 117
Query: 52 CERASIDEVYLDLTDAAE------AMLAETPPESLDEVDEEAL------KSHILGLESKD 99
E+ S+DE +LD+T AA +L+ L++V + ++ I +
Sbjct: 118 VEKGSVDEAFLDVTKAAHMKQGEMGLLSSQGELRLEDVADPTTIVIPSRQAEIAAWLKEH 177
Query: 100 GNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLA 159
G + L LLA +V +R ++ E + CSAGIAHNK+LAK
Sbjct: 178 GREFSDVFDVTLHPQPTAENMSLLAAASRVVWTIRQKIYDELRYDCSAGIAHNKLLAKSI 237
Query: 160 SGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG---------VTTVGD 210
S +KP QQT + V ++ LP K ++ GGK G ++ G + ++
Sbjct: 238 SARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKFGEVVRLACGGKETCREAWLHSLCA 297
Query: 211 LLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASV 270
+ KF E Y + RG +++ R + KS + K+F P + T V
Sbjct: 298 MSKFFESVGDAEYAYRR-------LRGYDEGKIRERSISKSLMASKAFSPPSS--TANGV 348
Query: 271 QHWLNQLCEELSER 284
Q W+ L ELS R
Sbjct: 349 QKWVTVLSGELSAR 362
>gi|222153676|ref|YP_002562853.1| DNA polymerase IV [Streptococcus uberis 0140J]
gi|222114489|emb|CAR43359.1| DNA polymerase IV [Streptococcus uberis 0140J]
Length = 364
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 106/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAVFIS-------GNYEKYKEVGLEIREIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTENK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + +E TCSAG+++NK LAKLAS KP T + V+ L
Sbjct: 132 ---AVKIAKMIQHDIWQEVHLTCSAGVSYNKFLAKLASDFQKPHGLTLILPDQVEDFLAE 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +ELGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGTKSVEKL-HELGVYTGKDLLEIPEITLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKPNRIRKSIGSERTY 262
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V S+M A+++CPQ V K YR ++ +I+ + E S+DE
Sbjct: 53 VHSAMSCYRARQLCPQAIFV-------KPRFEVYREVSEQIRAIMHQYTLLVEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++P E
Sbjct: 106 YLDVT--------DSPYEK----------------------------------------- 116
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI +R Q+L++T+ T SAG+++NKMLAK+AS +NKP + +
Sbjct: 117 ---NSATLIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQGLDFI 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+KK + GK + +++G+ T DL D L++ +G G + IA GI
Sbjct: 174 ANLPVKKFHGI-GKATVKMLHDMGIFTGLDLRNTPADVLKQHFG-KRGDFFHQIAHGIDN 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+A KS GS +F + + + L E S+ DL++ +R A T+T
Sbjct: 232 REVKAERNHKSVGSETTF-----VHNTMDDKVIVAALYRENSQAF-KDLQKKQRKARTIT 285
Query: 301 L 301
+
Sbjct: 286 I 286
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 126/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M AK CP I V KA YR ++ SI E S+DE
Sbjct: 44 VRSAMSSVIAKRNCPDIIFV-------KARFDRYREISQQIRSIFFEYTDLVEPLSLDEA 96
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S
Sbjct: 97 YLDVT------------------------------ENKKGNPS----------------- 109
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+I E+R ++ ++T SAGI+ NK +AK+AS +NKP Q TV V L
Sbjct: 110 -----ATMIAREIREKIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEEVLDFL 164
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L I+K + GK+ LG+ T DL SE L + +G G + +N+ RGI
Sbjct: 165 EQLEIRKFYGV-GKVTAEKMYRLGIFTGKDLKSKSEAYLADHFG-KHGPYYYNVVRGIHE 222
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ + KS G+ ++F + ++S L +L ++E + L+++K T+T
Sbjct: 223 SEVKPNRMRKSLGAERTFS-----ENISSEIFMLEKLT-NIAEEIERRLQKSKVAGKTVT 276
Query: 301 L 301
L
Sbjct: 277 L 277
>gi|15799936|ref|NP_285948.1| DNA polymerase IV [Escherichia coli O157:H7 str. EDL933]
gi|15829512|ref|NP_308285.1| DNA polymerase IV [Escherichia coli O157:H7 str. Sakai]
gi|168763472|ref|ZP_02788479.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|217324216|ref|ZP_03440300.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|387880812|ref|YP_006311114.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|416314767|ref|ZP_11658954.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|419045011|ref|ZP_13591967.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|419049925|ref|ZP_13596836.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|419059657|ref|ZP_13606456.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|419060440|ref|ZP_13607226.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|419107283|ref|ZP_13652393.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|421816484|ref|ZP_16252053.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|421828626|ref|ZP_16263957.1| DNA polymerase IV [Escherichia coli PA7]
gi|423712146|ref|ZP_17686450.1| DNA polymerase IV [Escherichia coli PA31]
gi|424075040|ref|ZP_17812418.1| DNA polymerase IV [Escherichia coli FDA505]
gi|424122327|ref|ZP_17855737.1| DNA polymerase IV [Escherichia coli PA5]
gi|424138355|ref|ZP_17870684.1| DNA polymerase IV [Escherichia coli PA14]
gi|424144804|ref|ZP_17876602.1| DNA polymerase IV [Escherichia coli PA15]
gi|424450070|ref|ZP_17901839.1| DNA polymerase IV [Escherichia coli PA32]
gi|424453353|ref|ZP_17904925.1| DNA polymerase IV [Escherichia coli PA33]
gi|424472686|ref|ZP_17922388.1| DNA polymerase IV [Escherichia coli PA42]
gi|424523797|ref|ZP_17967852.1| DNA polymerase IV [Escherichia coli EC4421]
gi|424530007|ref|ZP_17973663.1| DNA polymerase IV [Escherichia coli EC4422]
gi|425095675|ref|ZP_18498721.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|425123424|ref|ZP_18525028.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|425160107|ref|ZP_18559300.1| DNA polymerase IV [Escherichia coli FDA506]
gi|425165616|ref|ZP_18564444.1| DNA polymerase IV [Escherichia coli FDA507]
gi|425171899|ref|ZP_18570322.1| DNA polymerase IV [Escherichia coli FDA504]
gi|425183923|ref|ZP_18581573.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|425209419|ref|ZP_18605181.1| DNA polymerase IV [Escherichia coli PA4]
gi|425215468|ref|ZP_18610807.1| DNA polymerase IV [Escherichia coli PA23]
gi|425222039|ref|ZP_18616918.1| DNA polymerase IV [Escherichia coli PA49]
gi|425228286|ref|ZP_18622702.1| DNA polymerase IV [Escherichia coli PA45]
gi|425234586|ref|ZP_18628564.1| DNA polymerase IV [Escherichia coli TT12B]
gi|425408572|ref|ZP_18790754.1| DNA polymerase IV [Escherichia coli NE098]
gi|425414858|ref|ZP_18796515.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|425426008|ref|ZP_18807081.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|428950826|ref|ZP_19022984.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|428956675|ref|ZP_19028401.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|428975628|ref|ZP_19045824.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|428981341|ref|ZP_19051099.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|428987616|ref|ZP_19056929.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|428993428|ref|ZP_19062357.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|429005744|ref|ZP_19073696.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|429012110|ref|ZP_19079387.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|429018347|ref|ZP_19085150.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|429023995|ref|ZP_19090434.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|429045093|ref|ZP_19109852.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|429048246|ref|ZP_19112910.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|429059300|ref|ZP_19123467.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|429076537|ref|ZP_19139763.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429823779|ref|ZP_19355316.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429830138|ref|ZP_19361035.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444956342|ref|ZP_21274359.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444961688|ref|ZP_21279458.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|445026927|ref|ZP_21342712.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|445048918|ref|ZP_21364097.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|445054545|ref|ZP_21369503.1| DNA polymerase IV [Escherichia coli 99.0670]
gi|22095615|sp|Q8X7Q1.1|DPO4_ECO57 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12513002|gb|AAG54556.1|AE005201_9 damage-inducible protein P; putative tRNA synthetase [Escherichia
coli O157:H7 str. EDL933]
gi|13359715|dbj|BAB33681.1| damage-inducible protein DinP [Escherichia coli O157:H7 str. Sakai]
gi|189366404|gb|EDU84820.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|209745366|gb|ACI70990.1| damage-inducible protein DinP [Escherichia coli]
gi|217320437|gb|EEC28861.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|326338762|gb|EGD62581.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|377897027|gb|EHU61415.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|377900349|gb|EHU64682.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|377902286|gb|EHU66592.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|377918852|gb|EHU82897.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|377967154|gb|EHV30560.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|386794270|gb|AFJ27304.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|390653899|gb|EIN31990.1| DNA polymerase IV [Escherichia coli FDA505]
gi|390684103|gb|EIN59733.1| DNA polymerase IV [Escherichia coli PA5]
gi|390711159|gb|EIN84143.1| DNA polymerase IV [Escherichia coli PA15]
gi|390714385|gb|EIN87294.1| DNA polymerase IV [Escherichia coli PA14]
gi|390744762|gb|EIO15604.1| DNA polymerase IV [Escherichia coli PA32]
gi|390745592|gb|EIO16385.1| DNA polymerase IV [Escherichia coli PA31]
gi|390756602|gb|EIO26105.1| DNA polymerase IV [Escherichia coli PA33]
gi|390779287|gb|EIO47006.1| DNA polymerase IV [Escherichia coli PA42]
gi|390861056|gb|EIP23337.1| DNA polymerase IV [Escherichia coli EC4421]
gi|390872231|gb|EIP33571.1| DNA polymerase IV [Escherichia coli EC4422]
gi|408072826|gb|EKH07143.1| DNA polymerase IV [Escherichia coli PA7]
gi|408090828|gb|EKH24085.1| DNA polymerase IV [Escherichia coli FDA506]
gi|408096503|gb|EKH29442.1| DNA polymerase IV [Escherichia coli FDA507]
gi|408103331|gb|EKH35702.1| DNA polymerase IV [Escherichia coli FDA504]
gi|408117126|gb|EKH48357.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|408141950|gb|EKH71370.1| DNA polymerase IV [Escherichia coli PA4]
gi|408150648|gb|EKH79212.1| DNA polymerase IV [Escherichia coli PA23]
gi|408153774|gb|EKH82149.1| DNA polymerase IV [Escherichia coli PA49]
gi|408159116|gb|EKH87218.1| DNA polymerase IV [Escherichia coli PA45]
gi|408167378|gb|EKH94890.1| DNA polymerase IV [Escherichia coli TT12B]
gi|408337814|gb|EKJ52499.1| DNA polymerase IV [Escherichia coli NE098]
gi|408350941|gb|EKJ64767.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|408353439|gb|EKJ66949.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|408560046|gb|EKK36332.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|408585788|gb|EKK60616.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|408617843|gb|EKK90946.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|427215048|gb|EKV84278.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|427218210|gb|EKV87237.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|427234897|gb|EKW02565.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|427251839|gb|EKW18366.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|427253688|gb|EKW20096.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|427254673|gb|EKW20996.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|427271306|gb|EKW36136.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|427277961|gb|EKW42463.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|427287088|gb|EKW50897.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|427293012|gb|EKW56307.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|427301119|gb|EKW64008.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|427305111|gb|EKW67718.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|427323346|gb|EKW84928.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|427335084|gb|EKW96132.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429260584|gb|EKY44141.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429262171|gb|EKY45533.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444583318|gb|ELV59045.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444586342|gb|ELV61854.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|444650657|gb|ELW23483.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|444673232|gb|ELW44885.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|444674790|gb|ELW46299.1| DNA polymerase IV [Escherichia coli 99.0670]
Length = 351
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 125 CGVLIVTE----LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
CG+ TE +R Q+ +ET T SAGIA NK LAK+AS NKP Q V V L
Sbjct: 113 CGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGKVLDFL 172
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP++K+ + GK+ + +LG+ TVGDL S ++L+ +G G L+ +ARGI
Sbjct: 173 QPLPVRKVPGV-GKVTQARLEQLGIHTVGDLATHSAEELEHYFG-RYGRRLYELARGIDE 230
Query: 241 EEVQ 244
EVQ
Sbjct: 231 REVQ 234
>gi|451947937|ref|YP_007468532.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
gi|451907285|gb|AGF78879.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
Length = 359
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R +V E TCSAG+++NK LAK+AS M KP T +P + LLD+LPI K +
Sbjct: 129 IRSRVFHEVGLTCSAGVSYNKFLAKVASDMKKPDGLTVIPIDEARSLLDTLPIGKFFGV- 187
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
G++ + LG+ D+L+F + +L +G G + +IARG+ V+++ KS
Sbjct: 188 GRVTEKKMHSLGIHYGRDILRFDKAQLIRFFG-KAGAFFHDIARGVDNRPVESQKGRKSI 246
Query: 253 GSGKSF 258
G+ +F
Sbjct: 247 GTETTF 252
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 128/309 (41%), Gaps = 88/309 (28%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYL 62
S+M +A+++CPQ+ V + Y++ +++ SI R E S+DE YL
Sbjct: 57 SAMSSRKAQQLCPQVLFV-------RPRFEVYKSVSNQIRSIFHRYTDIIEPLSLDEAYL 109
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+++ DKL
Sbjct: 110 DVSE-----------------------------------------------------DKL 116
Query: 123 -LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ + I E++ + E T SAG++ NK +AK+AS MNKP T + S ++ ++
Sbjct: 117 GIGSAIEIAKEIKNAIRTELHLTASAGVSTNKFVAKIASDMNKPDGLTFIGPSRIEAFIE 176
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LPI+K + GK+ N L + DL K S+D L +G G + +NI RGI
Sbjct: 177 ALPIQKFYGI-GKVTAKKMNSLQIYKGADLKKLSKDHLLNLFG-KVGNFYYNIVRGIDER 234
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEE---------LSERLCSDLEQN 292
VQ +F R LK++ + + + L EE +++R+ LE
Sbjct: 235 PVQ------------TF---RELKSIGAEDTFTSDLMEEQELIMELKLIAQRVVKRLEAK 279
Query: 293 KRIAHTLTL 301
+ + TLTL
Sbjct: 280 QVLGSTLTL 288
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A+++CP++ V K Y+ +V +I E S+DE
Sbjct: 57 VRSAMSSTVARKLCPELIFV-------KHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S +
Sbjct: 110 YLDVT------------------------------ENKKGNPSAS--------------- 124
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++L++T T SAGI+ NK +AK+AS NKP Q TV V L
Sbjct: 125 -------LIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGEVLDFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L IKK + GK+ LG+ T DL +E L +++G +G + I RGI
Sbjct: 178 ENLDIKKFYGV-GKVTQKKMYALGIYTGADLKTKTEAYLTQNFG-KSGAHYFRIVRGIHN 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V K H + KS R + + ++ +ELS+ L L ++K T+T
Sbjct: 236 SPV------KPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKTIT 289
Query: 301 L 301
L
Sbjct: 290 L 290
>gi|419874079|ref|ZP_14396035.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
gi|388351588|gb|EIL16800.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
Length = 293
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 72/283 (25%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDLTDAAE 69
A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE YLD+TD+
Sbjct: 4 ALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVH 56
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
C A LI
Sbjct: 57 ------------------------------------------CHGSA----------TLI 64
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+
Sbjct: 65 AQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIP 124
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
+ GK+ + +G+ T GD+ K L + +G G LW ++GI +V + L
Sbjct: 125 GV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLR 182
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
KS G ++ + HW CE + ERL +LE+
Sbjct: 183 KSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 215
>gi|330718299|ref|ZP_08312899.1| DNA-damage-inducible protein P [Leuconostoc fallax KCTC 3537]
Length = 361
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I ++R ++LK T T S G++HNK+LAKL S NKP T + S++ +D+LP
Sbjct: 127 SGATIAAQIRHEILKTTHLTSSVGVSHNKLLAKLGSNYNKPNGVTVINHSNMLEFIDALP 186
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
I K + +G K L +L + L + S++ L+ +G G L+ ARG++ EV+
Sbjct: 187 IDKFRGVGQKTKEKL-IQLDIHDGRQLRQLSQEMLRAQFG-KFGEHLYLQARGMNFSEVK 244
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ +S G +F R L T A VQ+ QL +++ L Q K + TL +
Sbjct: 245 WQRQRQSVGKETTF--DRFLHTEAQVQNAFGQLA----DKMIISLRQQKVVGRTLNI 295
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 102/244 (41%), Gaps = 62/244 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M A+ +CPQ V VP D + YR ++ I AR E S+DE
Sbjct: 56 VHSAMSAVRAQRLCPQA--VYVP-----PDFNRYREVSRQIRQIFARHTDLIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T + LGL S
Sbjct: 109 YLDVT------------------------VNKLGLPS----------------------- 121
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ +R Q+ ET T SAG+A NK LAK+AS NKP Q + + V L
Sbjct: 122 -----ATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTRVLEFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP++K+ + GK+ + +LG+ TVGDL +L+ +G G L+ +ARGI
Sbjct: 177 QPLPVRKVPGV-GKVTQARLEQLGIQTVGDLATHGVQELEHYFG-RYGRRLYELARGIDE 234
Query: 241 EEVQ 244
EVQ
Sbjct: 235 REVQ 238
>gi|320547508|ref|ZP_08041794.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
gi|320447853|gb|EFW88610.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
Length = 366
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 126/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G ++ I R E SIDE
Sbjct: 67 VHSAMSSMEAYERCPQAIFIS-------GNYQKYREIGMQIREIFKRYTDLVEPMSIDEA 119
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 120 YLDVTENK------------------------LGIKS----------------------- 132
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ I ++ + +E TCSAG+++NK LAKLAS +KP T V + L
Sbjct: 133 -----AIKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFDKPKGLTLVMPEDAEDFL 187
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP++K +G K L ++LGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 188 KELPVEKFHGVGKKSVEKL-HQLGVYTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISN 245
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS +++ + L A ++ +++ + R+ + L +N +I +
Sbjct: 246 SPVKPNRIRKSIGSERTY--GKLLYDDADIKSEISK----NARRVVNSLARNNKIGRIVV 299
Query: 301 L 301
L
Sbjct: 300 L 300
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ ETE T SAGIA NK LAK+AS KP Q + V+ L LP+ K+
Sbjct: 124 IAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHRVEAFLTPLPVNKV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L ELG+ TVGDL SE +L+ +G + G L+ ARGI V++
Sbjct: 184 PGVGKVMEAKL-AELGIATVGDLRARSEAELEARFG-SFGLRLYQRARGIDERPVESDQP 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F AL L +L+E+ + + +RIA T+ L
Sbjct: 242 VQSISSEDTFAEDLALDA-------LEPAIRQLAEKTWNATRRTERIARTVVL 287
>gi|350400596|ref|XP_003485892.1| PREDICTED: DNA polymerase iota-like [Bombus impatiens]
Length = 565
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 33/323 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EA ++CP + LV DL++YR+ ++V+ IL + ER +D+ ++D+
Sbjct: 65 MSVQEALQLCPGLVLVN------GEDLTNYRHYSAKVLEILHQFTPLVERLGLDDNFMDV 118
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKAT--VKEWLCRCDADHRDKL 122
T + + L+ L + +D N E C C R
Sbjct: 119 TSIVQKYMNSGNNSELN-----------LSINMEDENPVGKVFGTSEEECPCGCHAR--- 164
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L I E+R ++ K+ TCSAGIAHNK+LAKL ++KP QT V S L +
Sbjct: 165 LIIASKIAAEIRKRIYKDLHITCSAGIAHNKLLAKLVGSLHKPNHQTLVFPCSAPMFLST 224
Query: 183 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+ + K+ +G K L + + TV DL K + L+ G + L + A GI
Sbjct: 225 IGSVSKIPGVGQKTAQLLISN-NIKTVDDLRKTPLETLEMKIGIDLARKLKDNAEGIDET 283
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ +S G F +++ VA V+ L L L+E D IA LT+
Sbjct: 284 VVKPTGKRQSIGLEDGF---KSVSLVAEVESRLGALLRRLTELAMED--GRIPIAMRLTV 338
Query: 302 HASAFKSSDSDSRKKFPSKSCPL 324
F S R+ ++ C L
Sbjct: 339 RKHDFNKPTSGKRE---TRQCAL 358
>gi|21355641|ref|NP_649772.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|24644984|ref|NP_731214.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|7298996|gb|AAF54198.1| DNApol-iota, isoform A [Drosophila melanogaster]
gi|10440506|dbj|BAB15800.1| dpol-iota [Drosophila melanogaster]
gi|15291835|gb|AAK93186.1| LD29090p [Drosophila melanogaster]
gi|23175897|gb|AAN14307.1| DNApol-iota, isoform B [Drosophila melanogaster]
gi|220945914|gb|ACL85500.1| DNApol-iota-PA [synthetic construct]
gi|220955602|gb|ACL90344.1| DNApol-iota-PA [synthetic construct]
Length = 737
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 35/331 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A V E L+ + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEALLRPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E+R ++ TC AGIA+NK+LAKL ++P QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G+++V L + D +++ +GF T T L ++A G V+
Sbjct: 227 VTGIGQK-TQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSG 285
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 308 SSDSDSRKK------FPSKSCPLRYGTAKIQ 332
SS ++++ F + CP G +K+Q
Sbjct: 343 SSHRETKQANILPSLFKTSMCPGETGVSKVQ 373
>gi|260783390|ref|XP_002586758.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
gi|229271883|gb|EEN42769.1| hypothetical protein BRAFLDRAFT_134446 [Branchiostoma floridae]
Length = 488
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 114/262 (43%), Gaps = 40/262 (15%)
Query: 53 ERASIDEVYLDLTDAAEAML--AETPPESLDEVDEEALKSHILG-LESKDGNDSKATVKE 109
ER DE ++D+T+ EA + A +P L HI +E +D
Sbjct: 93 ERLGFDENFVDVTETVEARVKSAFSP----------QLNGHIFPEIEIED---------- 132
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
R K LACG I E+R + + TC AGIAHNK+LAKL +G +KP QQT
Sbjct: 133 --------ERHKRLACGSQIAAEIREALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQT 184
Query: 170 TVPFSSVKGLLDSLPI-KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 228
++ V L+ +L + + +G + LQ LG++TV +L D LQ +G T
Sbjct: 185 SLLPGGVGKLMGTLKTARNIPGIGSRTFKRLQT-LGISTVQELQDAPADTLQAEFGSQTA 243
Query: 229 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
+ + RG+ V P++ SF + + + + L + L +RL D
Sbjct: 244 QVMQQLCRGVDPSPVTPTGPPQTISDEDSF---KKCGSFQDAKKRMTGLLQSLMKRLKGD 300
Query: 289 LEQNKRIAHTLTLHASAFKSSD 310
R H L + +S+
Sbjct: 301 ----GRFPHVLRVTVRKLSASN 318
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 123/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GHYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L+ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 LSSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVLAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++GV T DLL E L +++G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKTVERL-HDMGVYTGQDLLDVPEMVLIDTFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELTSLC----QRVAASLERNEKKGRTIVL 299
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 136/320 (42%), Gaps = 65/320 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK+ CP I V K+D + Y+ A I E++
Sbjct: 58 VKSAMSNVLAKQKCPHIIFV-------KSDFARYKELS---------------AQIREIF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE L + + N+ A
Sbjct: 96 FEYTDLVE-------PLSLDEA--------YLDVTNNKKNNPSANE-------------- 126
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
I E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L+
Sbjct: 127 -------IAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEEVIQFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP+ K +G + N LG+ DL K S ++L + +G +G +NI RGI
Sbjct: 180 ELPVNKFYGVGKVTAAKMYN-LGIFVGNDLKKRSLEELTQLFG-KSGLHYYNIVRGIHKS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS G+ ++F + + + LN + +E+ +R+ + K I TL +
Sbjct: 238 EVKPNRIRKSVGAERTF--RENISSEIYMLDKLNDIADEIEKRMHKSNTKGKTI--TLKI 293
Query: 302 HASAF-KSSDSDSRKKFPSK 320
S F + + S + +F SK
Sbjct: 294 KYSDFTQQTRSKTVGQFISK 313
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I LR ++ T T SAG+++NKMLAK+AS +NKP +P + SLPI++
Sbjct: 124 IAERLRAEIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPPAEGPAFAASLPIERF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + + LG+ T DLL+FS + L++++G G + +++ARGI V+
Sbjct: 184 HGI-GKATAAHMHALGIKTGADLLRFSAESLRQAFG-KHGDFYYHMARGIDLRPVEPTRE 241
Query: 249 PKSHGSGKSF 258
KS GS +F
Sbjct: 242 RKSIGSETTF 251
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G + ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>gi|195499016|ref|XP_002096768.1| GE25854 [Drosophila yakuba]
gi|194182869|gb|EDW96480.1| GE25854 [Drosophila yakuba]
Length = 737
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 35/331 (10%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EA+ +CP + LV DL+ YR + +L E+ DE ++D+T
Sbjct: 70 EAQRICPDLVLV------NGEDLTPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALV 123
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A V E K + DG C C R LA G
Sbjct: 124 ELRQAH--------VAEAQTKPPVGHTYPADGTPLSN------CDCGCAQR---LAIGTR 166
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +K+
Sbjct: 167 IAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRELGDLKR 226
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G++++ L + D +++ +GF T T L ++A G V+
Sbjct: 227 VTGIGQK-TQCLLLEAGMSSIEQLQQCDMDVMRKKFGFETATRLRDLAFGRDTSSVRPTG 285
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
PK+ G + P +++T V+ L + L E++ D I L S K
Sbjct: 286 KPKTIGMEDAC-KPISVRT--DVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKK 342
Query: 308 SSDSDSRKK------FPSKSCPLRYGTAKIQ 332
+S ++++ F + CP G +K+Q
Sbjct: 343 TSHRETKQANILPSLFKTSVCPGETGVSKVQ 373
>gi|357235923|ref|ZP_09123266.1| DNA polymerase IV [Streptococcus criceti HS-6]
gi|356883905|gb|EHI74105.1| DNA polymerase IV [Streptococcus criceti HS-6]
Length = 365
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
V S+M EA E CP+ + D YR G ++ I R E SIDE
Sbjct: 66 VHSAMNSKEALERCPEAIFIS-------GDYQKYRQVGQQIREIFKRYTDLFEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + +++ + +E + TCSAG+++NK LAKLAS +KP T + + L
Sbjct: 132 -----AVKLAKMIQLDIWQEVQLTCSAGVSYNKFLAKLASDYDKPHGLTLILPDEAEDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K + GK +ELGV T DLL+ E L + +G G L+ ARGIS
Sbjct: 187 KGLPIEKFYGV-GKQSVKRLHELGVYTGQDLLEIPEMTLIDHFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|256544709|ref|ZP_05472081.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
gi|256399598|gb|EEU13203.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
Length = 347
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 72/292 (24%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDLTDAAE 69
AK++CP + +V+V D Y+ EV I+ + E+ SIDE Y+ +
Sbjct: 61 AKQLCPDLIMVKV-------DRKYYKKKSKEVFDIIESYSHTIEQVSIDEAYIFI----- 108
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
D N+ K K+LA
Sbjct: 109 -----------------------------DNNEDK----------------KILA----- 118
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
+++ QVLKET S GI++NK LAKLAS NKP + V +L +L IKK+
Sbjct: 119 -QKIQNQVLKETGIGVSIGISYNKFLAKLASDWNKPMGIKEISKEEVPEILKNLDIKKVH 177
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LG K L+ ++GV + DLLK ++ LQ +G G +++ + RG +VQ
Sbjct: 178 GLGNKSVQKLK-DIGVYKIADLLKLDQEFLQSLFG-KQGRYVYKVIRGEDNRKVQTN--T 233
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
K G+ F + K + + ++ +E+S+++ DL+ A+T+ L
Sbjct: 234 KRKSIGREFTFRKNTKDLKILYAYI----DEISQKIEEDLKAKDIKAYTINL 281
>gi|302684051|ref|XP_003031706.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
gi|300105399|gb|EFI96803.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
Length = 635
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 152/379 (40%), Gaps = 77/379 (20%)
Query: 10 EAKEVCPQIELVQVPVAR----------------GKADLSSYRNAGSEVVSI---LARKG 50
+A + CP +++V V + K L YR +++ S+ L
Sbjct: 97 DALKRCPHLKVVHVATYKEGEKEPGYWDDVDTKTHKVSLDFYRRESTKMQSLFKELLPDV 156
Query: 51 RCERASIDEVYLDLTDAAEAMLAETPP-------------------------ESLDEV-- 83
E+ASIDE + D T A+A L E P E L V
Sbjct: 157 EIEKASIDEAFFDFTKLAKAKLLERFPYLASVPHDAPRGADSPLPPPPPLSWEGLGTVIP 216
Query: 84 -----DEEALKSHILGLESKDGNDSKATVKEWLCRCDADH--------RDKLLACGVLIV 130
D+E + E KD ++ A E DA + D LA +
Sbjct: 217 VHPPPDKEKERGKQGEDEHKDEDEVDAPESE----DDAPNLEDDPTTWHDHALAIAAEYM 272
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK--- 187
+ + ++ +T SAGI NK LAKL + KP + +++ L LP +K
Sbjct: 273 LKAKEEIYARLGYTTSAGIGRNKFLAKLTASYRKPRGLNVLRNAAIPNYLRPLPFQKAGT 332
Query: 188 ---MKQLGGKLGTSLQNELGVTTVGDLLKFSE--DKLQESYGFNTGTWLWNIA-RGISGE 241
++ LGGKLG ++ E +TVGDL + +++Q+ +G W++ + RGI
Sbjct: 333 SFSIRFLGGKLGKAIAQEYDASTVGDLFVDAPVTEEMQQKFG-EESIWVYEVLRRGIDRN 391
Query: 242 EVQARL-LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC-SDLEQNKRIAHTL 299
EV+ + L KS + K+ P P + A WL L EL+ RL + LE TL
Sbjct: 392 EVKEKTALFKSMLASKNLPKP--ITNAADGHQWLRVLAAELALRLKDARLESPNLWPKTL 449
Query: 300 TLHASAFKSSDSDSRKKFP 318
LHA + + FP
Sbjct: 450 VLHARKGYDTGRSKQAPFP 468
>gi|195390592|ref|XP_002053952.1| GJ24165 [Drosophila virilis]
gi|194152038|gb|EDW67472.1| GJ24165 [Drosophila virilis]
Length = 749
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 141/343 (41%), Gaps = 43/343 (12%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V M EA+ +C + LV DL+ YR ++ +L E+ DE
Sbjct: 62 VTKLMGVTEAQRLCSDLVLV------NGEDLAPYRLMSQKIFDLLLNYTPDVEKLGFDEN 115
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
++D+T + A E K I + DG A C C R
Sbjct: 116 FMDVTALVDLRQAHAA--------EAQRKPPIGHIYPADGTALTA------CSCGCAQR- 160
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LA G I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + +
Sbjct: 161 --LAIGTRIAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFM 218
Query: 181 DSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L + + +G K T L E GV+TV L + + +++ +GF T T L ++A G
Sbjct: 219 RELNDLHSVTGIGQKTQTLLL-EAGVSTVEQLQQCDMEFMRKKFGFETATKLRDLALGRD 277
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
G V+A G K+ A KT+ SV + L +RL + ++ RI +
Sbjct: 278 GSSVRA------TGKPKTISVEDACKTI-SVHTDVTDKFRMLLKRLMEQVAEDGRIPIAI 330
Query: 300 TLHASAFKSSDSDSRKK----------FPSKSCPLRYGTAKIQ 332
+ F S S ++ F + CP G K+Q
Sbjct: 331 KVVLRKFDSQKKTSHRETKQANILPSLFKTSVCPGETGVCKVQ 373
>gi|424779955|ref|ZP_18206841.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
gi|422843494|gb|EKU27931.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
Length = 360
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D HR + + + + ++ ++ +E + TCSAG+++NK LAKLAS KP T +
Sbjct: 112 DVSHRCQTITEAIQVARMIQYKIWEELQLTCSAGVSYNKTLAKLASDYQKPCGLTYITKE 171
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
L LPI+K K +G K ++ LG+ D+L++SE + +++G G L+
Sbjct: 172 QAPQFLAQLPIEKFKGIGKKTLPKMKA-LGIHYGRDVLRYSEQEWIQNFG-KFGYDLYQR 229
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
+GI V+ + +S G+ ++F P + + L Q +L+ER+ +L++ +
Sbjct: 230 VQGIDERPVEYKRKKQSIGTERTFHPPLLDEGM------LQQTLRQLTERIAIELKEKEY 283
Query: 295 IAHTLTLHASAFKSSDSDSRK-KFPSKS 321
+ LTL + + ++ +R+ +FP ++
Sbjct: 284 YGNVLTLKWR-YPNKNAQTRQIQFPHRT 310
>gi|81427996|ref|YP_394995.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
gi|78609637|emb|CAI54683.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
Length = 376
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L + +V L+ +L+ET+ SAGI++NK LAK+AS KPA +T V L
Sbjct: 134 LTHTIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSR 193
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K + +G K +Q+ LG+ T DLL SE L + +G G L+ RGI
Sbjct: 194 LPIEKFRGVGQKTVPKMQD-LGIMTGADLLAQSEMFLMQHFG-KLGYGLYRHVRGIDNRP 251
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
V+ + KS G+ ++ P L + VQ L L EL++RL
Sbjct: 252 VEYQRERKSIGNEHTYGQP--LISEEQVQVQLKSLAVELAQRL 292
>gi|254567201|ref|XP_002490711.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030507|emb|CAY68431.1| hypothetical protein PAS_chr1-4_0703 [Komagataella pastoris GS115]
Length = 614
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 27/277 (9%)
Query: 29 KADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAAEAMLAETPP---ESLDEVD 84
K L YR +++ I R + E+AS+DE +LDL + L E P SLD+
Sbjct: 122 KVSLDPYRRESRKIMRIFKLRCSKVEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF 181
Query: 85 EEALKSHILGLESKDGNDSKATVKEWLCRCD----------ADHRDKLLACGVLIVTELR 134
++ L + E +G D K V RC D D ++ + ++R
Sbjct: 182 DDYLPE--IPEELPEGLDFKGEV----IRCPETDDQDGLVLQDWDDIVMLLASMEAHDIR 235
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS-LPIKKMKQLGG 193
Q+ K ++T S GI K +AKLASG++KP QT + ++ L++ +G
Sbjct: 236 KQIEKALDYTTSCGIGRVKTIAKLASGLHKPDNQTIIRNCAIDNFLNTHFKFTDFWGIGP 295
Query: 194 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-----NTGTWLWNIARGISGEEVQARLL 248
K ++ L V + E+ QE T L+ + RG+ E + R+
Sbjct: 296 KTSGIIKQRLLVPEEDSIGYIKENFTQEELELKLKDPQLATRLYQLVRGLYQEAINTRID 355
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS GS K+F G +++ +V + WL +L +RL
Sbjct: 356 IKSMGSNKNFRG-KSVNSVKDLIDWLPVFVGDLIQRL 391
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 IGSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMALIDCFG-RFGYDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + LE+N++ T+ L
Sbjct: 247 VKTNRVRKSIGKERTY--RKLLYRDEDVLKELVSLC----QRVAASLERNEKQGRTIVL 299
>gi|328351096|emb|CCA37496.1| DNA polymerase eta subunit [Komagataella pastoris CBS 7435]
Length = 990
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 27/277 (9%)
Query: 29 KADLSSYRNAGSEVVSILA-RKGRCERASIDEVYLDLTDAAEAMLAETPP---ESLDEVD 84
K L YR +++ I R + E+AS+DE +LDL + L E P SLD+
Sbjct: 127 KVSLDPYRRESRKIMRIFKLRCSKVEKASVDESFLDLGNVVFQKLLELFPVLKNSLDKSF 186
Query: 85 EEALKSHILGLESKDGNDSKATVKEWLCRCD----------ADHRDKLLACGVLIVTELR 134
++ L + E +G D K V RC D D ++ + ++R
Sbjct: 187 DDYLPE--IPEELPEGLDFKGEV----IRCPETDDQDGLVLQDWDDIVMLLASMEAHDIR 240
Query: 135 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS-LPIKKMKQLGG 193
Q+ K ++T S GI K +AKLASG++KP QT + ++ L++ +G
Sbjct: 241 KQIEKALDYTTSCGIGRVKTIAKLASGLHKPDNQTIIRNCAIDNFLNTHFKFTDFWGIGP 300
Query: 194 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-----NTGTWLWNIARGISGEEVQARLL 248
K ++ L V + E+ QE T L+ + RG+ E + R+
Sbjct: 301 KTSGIIKQRLLVPEEDSIGYIKENFTQEELELKLKDPQLATRLYQLVRGLYQEAINTRID 360
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS GS K+F G +++ +V + WL +L +RL
Sbjct: 361 IKSMGSNKNFRG-KSVNSVKDLIDWLPVFVGDLIQRL 396
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LATATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVPGVGKVMQAKL-AELGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDQRP 232
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+A +S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 233 VEADQQVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 124/300 (41%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+ +CP+I V R + D+ YR+ + I +++
Sbjct: 52 VRSAMSGGMARRLCPEIVFV-----RSRFDV--YRSVSYQ---------------IRDIF 89
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD TD E P SLDE D K
Sbjct: 90 LDYTDLVE-------PLSLDE-----------------------------AYLDVTENKK 113
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++ ET T SAG++ NK LAK+AS +NKP + L+
Sbjct: 114 NMTSATLIAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITPEEAIAFLE 173
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L ++K +G + N +G+ T GDL + SE L +G G + + I R
Sbjct: 174 QLAVEKFHGVGKVTARKMHN-MGIYTGGDLKQRSEADLVRFFG-KAGRYYYRIVRAEDNR 231
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV + KS G+ ++F + V+ + N+L +L+E + +++ + T+TL
Sbjct: 232 EVNPHRIRKSIGAERTFN-----EDVSDPEIMKNKLT-DLAEGVHRYMDKTQNFGRTVTL 285
>gi|449015370|dbj|BAM78772.1| DNA polymerase iota, RAD30 [Cyanidioschyzon merolae strain 10D]
Length = 658
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 119/278 (42%), Gaps = 35/278 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL----------ARKGRCERA 55
MR DEAK +CP++ L DL+ YR+A + L R+ RCE
Sbjct: 61 MRVDEAKRLCPELVLF------CGEDLTPYRDAQERICEALEEKLRSLDEVGREHRCETV 114
Query: 56 SIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD 115
+DE DLT + L E + L ++ + +D +++ +C
Sbjct: 115 GLDEYIFDLTAVVDRRLRSMNAEC---AQKGPLNEYVGAVFPRDFMPE--SLQPDICLVG 169
Query: 116 ADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT-VPFS 174
+ +L A G I +R + T T S G+ NKMLAK A+ M+KP QTT VP
Sbjct: 170 PEEELRL-ALGSDIAKNMRDAAFERTGITISCGVGFNKMLAKFAANMHKPNGQTTFVPTV 228
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDL-LKFS-----EDKLQESYGFNTG 228
L L ++ + +G + L EL V TV +L +F E +++++G
Sbjct: 229 RADSWLSELELRSLPYVGRRFERLLSEELHVRTVKELRTRFDSPLTLEHAIRKTFGKFAA 288
Query: 229 TW------LWNIARGISGEEVQARLLPKSHGSGKSFPG 260
+ +W ARG EEV +R + SFPG
Sbjct: 289 VFAKRARDIWLAARGDFPEEVYSRGPLQRIHVEDSFPG 326
>gi|415836107|ref|ZP_11518536.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|417284255|ref|ZP_12071550.1| DNA polymerase IV [Escherichia coli 3003]
gi|425276150|ref|ZP_18667497.1| DNA polymerase IV [Escherichia coli ARS4.2123]
gi|323191391|gb|EFZ76653.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|386242464|gb|EII84199.1| DNA polymerase IV [Escherichia coli 3003]
gi|408207435|gb|EKI32179.1| DNA polymerase IV [Escherichia coli ARS4.2123]
Length = 351
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+L + K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLSLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 99/243 (40%), Gaps = 60/243 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+ +CPQ V D + YR + I E++
Sbjct: 52 VRSAMPGVTARRLCPQAIFV-------APDFARYRAVSRQ---------------IREIF 89
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
L TD E P SLDE + I S AT
Sbjct: 90 LAHTDLVE-------PLSLDEAYLDVTAPRI--------ASSSATAT------------- 121
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+R Q+ + T T SAGIA NK LAK+AS NKP Q + + V+ L
Sbjct: 122 --------AQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQVEAFLT 173
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L + ++ + GK+ ELGV TVGDL +F+ D+LQ +G G L+ ARGI
Sbjct: 174 PLKVGRIPGV-GKVAERKLAELGVATVGDLRRFTLDELQLRFG-RFGAALYRRARGIDER 231
Query: 242 EVQ 244
VQ
Sbjct: 232 PVQ 234
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V S+M AK+ CP +L+ VP Y++ +++ +I A+ E S+DE
Sbjct: 57 VRSAMASVAAKKRCP--DLIFVP-----PRFDVYKSVSNQIRNIFAQYTHLIEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD ++ G+ES
Sbjct: 110 YLDVTD------------------------NLKGIES----------------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I E+R ++LKET T SAG+++NK +AKLAS NKP Q +P S + +
Sbjct: 123 -----ATQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPKSGEQFV 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI++ +G ++ LG+ T DL K L++++G N+ + + ARG
Sbjct: 178 AGLPIRRFYGVGPVTAKKMER-LGILTGADLKKADLSWLRQNFG-NSADYYYAAARGKDD 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
VQ + KS G +++ K + + L + E+L L +E+ + HT+
Sbjct: 236 RIVQPNRIRKSVGVERTYS-----KDLFEKEEILTE-TEKLITLLWERIERANAVGHTIV 289
Query: 301 L 301
L
Sbjct: 290 L 290
>gi|254422468|ref|ZP_05036186.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
gi|196189957|gb|EDX84921.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
Length = 371
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ V I ++R ++ + + T SAG++ NK LAK+AS +NKP + + K ++
Sbjct: 135 IGSAVAIAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQ 194
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
L I+ +G T +++ LG+ T DL +++ +L +++G G++ + +AR
Sbjct: 195 LRIEDFYGVGPATATKMKS-LGIHTGADLKTWTQAELTQTFG-KVGSYYYRVARAEDNRP 252
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
V + KS G+ +SF R L + ++ L + E+S+R L++NKR HTLTL
Sbjct: 253 VNPNRIRKSIGAERSF--FRDLSQIEDMETALANIATEVSQR----LQKNKRQGHTLTLK 306
Query: 303 ASAFKSSDSDSRKK 316
+ + D+ +R +
Sbjct: 307 IK-YDNYDTITRSR 319
>gi|425738440|ref|ZP_18856703.1| DNA polymerase IV [Staphylococcus massiliensis S46]
gi|425479672|gb|EKU46845.1| DNA polymerase IV [Staphylococcus massiliensis S46]
Length = 356
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 72/320 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M +A ++CP VQ +YR A ++ I + + E S+DE
Sbjct: 55 VHSAMPMVQAHKLCPNGYYVQ-------PRFEAYREASGIIMDIFKSYTEKVEPLSLDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCD--ADH 118
YLD+T+ L R D A H
Sbjct: 108 YLDITE--------------------------------------------LVRPDLPASH 123
Query: 119 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
I +R + +T+ T SAG+++NK LAKLASGMNKP T + ++ V
Sbjct: 124 ----------IAEYIRRDIYDKTQLTSSAGVSYNKFLAKLASGMNKPNGLTIIDYNHVHE 173
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
+L +L I +G + + + G+ T DL + S D+L +G G +N RGI
Sbjct: 174 ILMNLDIGDFPGVGSRSKEKMHHH-GIYTGADLYQKSMDELIRWFG-KRGVGFYNKVRGI 231
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 298
EV+A + KS G+ ++F ++ + + Q ELS + L + ++ A T
Sbjct: 232 DHREVKAERIRKSVGTERTF------QSDVNDDALILQKIRELSHKTSERLGKLQKSAGT 285
Query: 299 LTLHASAFKSSDSDSRKKFP 318
+T+ +K ++ P
Sbjct: 286 VTVKIKTYKYETISKQRTLP 305
>gi|359475496|ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
Length = 1175
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK
Sbjct: 514 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 573
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 574 LPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQ 632
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 633 ESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 668
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|291278892|ref|YP_003495727.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
gi|290753594|dbj|BAI79971.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
Length = 400
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 144 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 203
TCS G+ NK++AK+ASG+NKP VP K +DS PI K+ +G +L +N L
Sbjct: 131 TCSIGVGSNKLIAKMASGINKPDGFCYVPREKNKDFIDSFPISKIWGVGRRLAKRFEN-L 189
Query: 204 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 263
G+ + DL F D L E +G N G L+ +A G E V P G S P
Sbjct: 190 GIFSTKDLRDFGVDSLVEMFGKN-GYKLYAMANGEYFEGVNTNEEP-VKSIGHSMTLPMD 247
Query: 264 LKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+ + + +L QLCE +SER + KR+
Sbjct: 248 IFNMDELSPYLLQLCEMVSERARQNRVSGKRL 279
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 135/313 (43%), Gaps = 44/313 (14%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G KE+CP++ V V ++ Y ++V ++ A+ E S+DE
Sbjct: 131 VRAAMPGFIGKELCPELHFVPV-------NMEKYAGVAAQVRAVFAQYDPNFEAFSLDEA 183
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
LDLTD + +LD+ + + + + ++W
Sbjct: 184 CLDLTDYVAKNWQKYASVALDDFESKE--------------EVQEEEEQW-----PSTPA 224
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKG 178
A +V ELR ++ T+ T SAGIA N MLAK+ S MNKP Q +PF+ V
Sbjct: 225 GRAAIAAAVVRELRQKIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLT 284
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
L LP++K+ +G L LGV T G+L K+ + T WL + G+
Sbjct: 285 FLCDLPVRKIGGIGKVTEKILNEALGVHTGGELFN-QRGKIFHLFTEKTAVWLLQTSLGV 343
Query: 239 -SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
E Q R KSF R ++++ + L C E+ + L DLE+ + A
Sbjct: 344 RERREKQER---------KSFSRERTFRSLSDPKE-LEAKCLEVCKMLAKDLEKANKAAK 393
Query: 298 TLTLHASAFKSSD 310
+T +K +D
Sbjct: 394 NVTF---VYKDTD 403
>gi|296083109|emb|CBI22513.3| unnamed protein product [Vitis vinifera]
Length = 1123
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ + +R ++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK
Sbjct: 492 LLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKA 551
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 552 LPGIGHVLEEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQ 610
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G+ ++ G R + +H+L LC+E++ RL
Sbjct: 611 ESKSIGAEVNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 646
>gi|225869213|ref|YP_002745161.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
gi|225702489|emb|CAX00406.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
Length = 367
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 140/344 (40%), Gaps = 70/344 (20%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + D + YR G ++ I R + E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFRRYTDQVEPVSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T ++ LG++S
Sbjct: 121 DVT------------------------TNKLGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I ++ + + TCSAG+++NK LAKLAS KP T V L+
Sbjct: 132 ---ALKIARLIQHDIWNSLQLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G + L +E+GV T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKRTVERL-HEMGVYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
V+ + KS S +++ + L A ++ L++ + R+ LE NK++ + L
Sbjct: 247 VKPNRMRKSISSERTY--AKLLYQEADIKVELSK----NARRVADLLEANKKLGRIIVLK 300
Query: 303 ASAFKSSDSDSRKKFP--SKSCPLRYGTAKIQEDTFNLFQAGLR 344
+ R P ++ L A+ D+ QAG+R
Sbjct: 301 VRYADFTTLTKRVSLPELTRDARLIDQVARELFDSLEEHQAGIR 344
>gi|119476993|ref|ZP_01617274.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
gi|119449800|gb|EAW31037.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
Length = 388
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R +V + T SAG+A NK LAK+ S NKP +P + V + ++P+ +
Sbjct: 148 LIAEEIRQRVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDR 207
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ + GK+ + +G+ T GDL FS +L E +G + G+ L++++RGI V+
Sbjct: 208 LFGV-GKVTAERLHRMGIQTCGDLRAFSIFQLSERFG-SFGSRLYDLSRGIDDRAVKTGR 265
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
+ KS +FP L + S L L ++L+ RL + +Q+K A+
Sbjct: 266 IRKSLSVEHTFPSD--LSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAY 313
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LATATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G + L ELG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVPGVGKVMQAKL-AELGIVTVGDLRTHGEVELEARFG-SFGLRLYQRARGIDQRP 232
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+A +S S +F AL L L+E+ + + +RIA T+ L
Sbjct: 233 VEADQQVQSISSEDTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 115/283 (40%), Gaps = 62/283 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK+ CPQI V K Y+ ++ +I +
Sbjct: 55 VRSAMSSVVAKKKCPQIIFV-------KPRFHRYKEISEQIRAI---------------F 92
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D H K
Sbjct: 93 FEYTDLVE-------PLSLDE-----------------------------AYLDVTHNKK 116
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L+
Sbjct: 117 GIDSANLIAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLE 176
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LPI++ +G + +LG+ DL + S + L +G G ++I RGI
Sbjct: 177 NLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKSLEYLITHFG-KMGRHYYDIVRGIHRS 234
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
EV+ + KS G ++ + T + L +L +EL ER
Sbjct: 235 EVKPHRIAKSVGVEHTYADD--IDTEKDIDQQLIRLAQELYER 275
>gi|313889773|ref|ZP_07823415.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|416852396|ref|ZP_11909541.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
gi|313121818|gb|EFR44915.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|356739885|gb|EHI65117.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
Length = 364
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 110/269 (40%), Gaps = 64/269 (23%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + YR G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYGKYREVGLEIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L V I ++ + KE TCSAG+++NK LAKLAS KP T + + L+
Sbjct: 129 LTSAVKIAKLIQYDIWKELHLTCSAGVSYNKFLAKLASDFEKPHGLTLILPDQAQPFLEK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+G+ DLL SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGIKSVEKL-HEMGIYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISSSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQ 271
V+ + KS GS +++ + L T A V+
Sbjct: 247 VKPDRIRKSIGSERTY--SKLLYTEADVK 273
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ ++R + +E + T SAG++ NK LAK+AS +NKP TT+P L SLPI+K
Sbjct: 124 LLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPPDKALEFLASLPIRK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK ++LG+TT +L ++ ED+L +G G++ +I RGI V+ +
Sbjct: 184 FHGV-GKATERKMHQLGITTGYELRQWREDQLIRHFG-KYGSFFHDIVRGIDNRPVEPQR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+ KS G + L T +N + +L+E L L + + + LTL
Sbjct: 242 IRKSIGCETT------LATDTDDIGTINAILADLAEELDHSLGKRRIGGYNLTL 289
>gi|238752553|ref|ZP_04614027.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
gi|238709228|gb|EEQ01472.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
Length = 371
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+ K
Sbjct: 140 LIAQEIRQSIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLSFLHDLPLSK 199
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G LQ ELG+ T D+ FS+ +L + +G G LW + GI EV
Sbjct: 200 IPGVGKVTAKRLQ-ELGLITCSDVQNFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDR 257
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W Q CE L E+L S+LE R
Sbjct: 258 LRKSVGVERTL--------AEDIHDW--QSCESLIEQLYSELETRLR 294
>gi|359459403|ref|ZP_09247966.1| DNA polymerase IV [Acaryochloris sp. CCMEE 5410]
Length = 355
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E++ +++ET T SAG++ NK LAK+ASG+ KP + V + + LPI+K
Sbjct: 122 IAREIKRLIVQETHLTASAGVSINKFLAKMASGLEKPNGLSLVAPDQAETFVQQLPIEKF 181
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK+ + ++LG+ T +L ++SE L +G G + + IARGI V A +
Sbjct: 182 HGI-GKVTAAKMHQLGIQTGTELRQWSEPSLVRQFG-KVGHYYYGIARGIDQRPVVANRI 239
Query: 249 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ +S FP L + L+ + ++ RL +N+R +TLTL
Sbjct: 240 RKSIGAERSFFPDISGLPV---LMEELDAIATQVHLRLA----ENQRSGYTLTL 286
>gi|225681089|gb|EEH19373.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb03]
Length = 1161
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 132/293 (45%), Gaps = 52/293 (17%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A ILA G + SIDE +D+
Sbjct: 423 MKG--ALQMCPNLKVLPY-------DFAAYEEASRNFYEVILAIDGIVQSVSIDEALVDI 473
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ LD A S +G+ S+ ++ + D
Sbjct: 474 TNIC-----------LD-----AGGSDGIGI-------SEGSIYREQAKADE-------- 502
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR V ++T S GI N + A++A KPA Q + +V+ + L
Sbjct: 503 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELT 558
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+K + + LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV
Sbjct: 559 VKDLPGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVG 617
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 295
++ KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 618 IQVPRKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 64/307 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK++CP + V K YR S+ I +++
Sbjct: 57 VRSAMPSITAKKLCPDLIFV-------KHRFDKYREVSSQ---------------IRDIF 94
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD TD E P SLDE L + N ATV
Sbjct: 95 LDYTDLVE-------PLSLDEA--------YLDVTENKLNYPSATV-------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
I ++R ++ + T T SAGI+ NK +AK+AS NKP Q T+ V L+
Sbjct: 126 -------IAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEEVIPFLE 178
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L I+K +G + + G+ T L + S + LQE +G +G +NI RGI
Sbjct: 179 ELEIRKFHGIGKVTAEKMYLQ-GIFTGAHLKERSLEFLQEHFG-KSGAHYYNIVRGIHHS 236
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G+ ++F + + ++ L Q+ EE+ +RL + K + TL +
Sbjct: 237 PVKPDRIRKSLGAERTF--SENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTV--TLKI 292
Query: 302 HASAFKS 308
S FK+
Sbjct: 293 KYSDFKT 299
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 125 CGVLIVTE----LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
CG+ TE +R Q+ +ET T SAG+A NK LAK+AS NKP V + V L
Sbjct: 122 CGLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNKVLAFL 181
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LP++K+ + GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI
Sbjct: 182 EPLPVRKVPGV-GKVTQARLEQLGIQTVGDLATHSAQELEHYFG-RYGRRLYELARGIDE 239
Query: 241 EEVQ 244
EVQ
Sbjct: 240 REVQ 243
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYL 62
S+M A+ +CPQ V + + +YR A +V++IL + E S+DE +L
Sbjct: 66 SAMTAARARSLCPQAIFV-------RPRMEAYREASRQVMAILRSYTPLVEPLSLDEAFL 118
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T A + DG + +E L R HR
Sbjct: 119 DVTAA-----------------------------TADGILAVEIAREILDRI---HR--- 143
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
ET T SAG+++NK+LAKLAS KP +P L
Sbjct: 144 -----------------ETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRGLDFLAP 186
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G L + +G+ TV DL ++++L +G G W + +ARGI
Sbjct: 187 LPVGKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRCFG-KAGAWFYEVARGIDRRP 244
Query: 243 VQARLLPKSHGSGKSF 258
VQ KS G+ ++F
Sbjct: 245 VQPTRQRKSVGTERTF 260
>gi|195108869|ref|XP_001999015.1| GI23309 [Drosophila mojavensis]
gi|193915609|gb|EDW14476.1| GI23309 [Drosophila mojavensis]
Length = 749
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 139/335 (41%), Gaps = 43/335 (12%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDLTDAA 68
EAK +C + LV DL+ YR ++ +L E+ DE Y+D+T
Sbjct: 70 EAKRLCADLVLV------NGEDLAPYRLMSQKIFDLLLNYTPDVEKLGFDENYMDVTSLV 123
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
E A + K + + DG A C C R LA G
Sbjct: 124 ELRQAHAA--------DAQFKPPVGHIYPADGTPLTA------CSCGCAQR---LAIGTR 166
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKK 187
I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + + L +
Sbjct: 167 IAQEIRDELHLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSTYAEQFMRELNDLHS 226
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K T LQ E G+T+V L D +++ +GF T T L ++A G V
Sbjct: 227 VTGIGQKTQTLLQ-EAGITSVEQLQNCDMDFMRKKFGFETATKLRDLALGRDASCV---- 281
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF- 306
+ G K+ A KT+ SV + L +RL + ++ RI + + F
Sbjct: 282 --RPTGKPKTISVEDACKTI-SVHTDVTDKFRMLLKRLMEQVAEDGRIPIAIKVVLRKFD 338
Query: 307 ---KSSDSDSRKK------FPSKSCPLRYGTAKIQ 332
KSS ++++ F + C G K+Q
Sbjct: 339 PQKKSSHRETKQANILPSLFKASVCAGETGVCKVQ 373
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 66/306 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M G A+++CP + V K + YR +++ S+ E S+DE
Sbjct: 57 VRSAMAGALARKLCPDLIFV-------KTNFERYREVSAQIRSVFHEFTDLVEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G S + W+
Sbjct: 110 YLDVT------------------------------ENKVGMPSATVIASWI--------- 130
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++ ++T SAGI+ NK +AK+AS +NKP Q T+P V L
Sbjct: 131 -------------RQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L I+K +G K + G+ T D+ S++ L +++G +G + ++I RGI
Sbjct: 178 EELDIRKFYGIGKKTAEKMYLH-GIFTGMDMKMKSKEYLSDNFG-KSGAYYYDIVRGIQY 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ + KS + ++F + + + L+ + EE+ +RL K I TL
Sbjct: 236 SEVRPNRIRKSLAAERTF--SENITSEIFMLEKLDIIAEEVEKRLAKSQVAGKTI--TLK 291
Query: 301 LHASAF 306
+ S F
Sbjct: 292 IKYSDF 297
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ T DL SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 124 IANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGV-GKASKKVMHDNGIFTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|225869835|ref|YP_002745782.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
gi|225699239|emb|CAW92538.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
Length = 367
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 139/344 (40%), Gaps = 70/344 (20%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + D + YR G ++ I R + E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFKRYTDQVEPVSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T ++ LG++S
Sbjct: 121 DVT------------------------TNKLGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I ++ + + TCSAG+++NK LAKLAS KP T V L+
Sbjct: 132 ---ALKIARLIQHDIWNSLQLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
V+ + KS S +++ + L A ++ L++ + R+ LE NK++ + L
Sbjct: 247 VKPNRMRKSISSERTY--AKLLYQEADIKAELSK----HARRVADLLEANKKLGRIIVLK 300
Query: 303 ASAFKSSDSDSRKKFPSKSCPLRYGTAKIQE--DTFNLFQAGLR 344
+ R P + R +E D+ QAG+R
Sbjct: 301 VRYADFTTLTKRVSLPELTRDARIIDQVARELFDSLEEHQAGIR 344
>gi|320592660|gb|EFX05090.1| sister chromatid cohesion protein [Grosmannia clavigera kw1407]
Length = 870
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-P 184
G IV +RM + F CSAGIA NK+++KL S +KP +QT V +V L+ L
Sbjct: 295 GARIVRAVRMAIYDHLRFRCSAGIASNKLVSKLGSSQHKPDRQTVVRPRAVGSFLERLSS 354
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ---------ESYGFNTGTWLWNIA 235
+ +++ LGGKLG + ++ +L ++Q ES +T ++ +
Sbjct: 355 VTRLRGLGGKLGARVVAAFDTESIAELRTIPLAEMQSRLAGGGAGESIDADTARHVYGML 414
Query: 236 RGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
RGI EV +R KS S KSF P L + + WL EL RL
Sbjct: 415 RGIDHGEVTSRTEIKSLISAKSFQPP--LTSPEQGRRWLRVFAAELRCRL 462
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V+ L LP+ ++
Sbjct: 124 IARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVEAFLTPLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+A
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEADQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L++ +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LSEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|343085717|ref|YP_004775012.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
gi|342354251|gb|AEL26781.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
Length = 358
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L LI ++R ++ ++T SAGI++NK LAK+AS +NKP Q + + L+
Sbjct: 118 LPSATLIAKDIRKKIKEQTGLNASAGISYNKFLAKIASDLNKPNGQAVITPGEAEAFLEK 177
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G + + N G+ DL ++S L +G +G + I RGI E
Sbjct: 178 LPIEKFYGIGKVMAKKM-NGFGIYNGYDLKQYSLPFLTGRFG-KSGLHFYKIVRGIHESE 235
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G ++F ++++Q L E + LE+N+ I T+T+
Sbjct: 236 VKPNRIRKSIGMERTFDN-----DLSAMQAIEASLKENILPEFFRRLEKNQAIGRTITI 289
>gi|419706767|ref|ZP_14234277.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
gi|383283489|gb|EIC81443.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
Length = 368
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAIFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRIRKSIGSERTY 262
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
++ E+R ++ +T T SAGI+ NK LAK+AS NKP Q T+P V L++L +
Sbjct: 123 ATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEEVLSFLENLDV 182
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
KK +G K + LG+ + DL S L++ +G +G + + RGI EV+
Sbjct: 183 KKFHGIGAKTKLKMYG-LGIYSGNDLKLQSAAFLEKHFG-KSGIHYFKVVRGIHTSEVKP 240
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+PKS G+ ++F +T S + ++ + + +S L ++NK T+TL
Sbjct: 241 HRIPKSLGAERTF------ETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITL 290
>gi|420369939|ref|ZP_14870578.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
gi|391320753|gb|EIQ77562.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
Length = 288
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ + GK+ + +G+ T GD+ K L + +G G LW ++GI +V +
Sbjct: 181 IPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSER 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
L KS G ++ + HW CE + ERL +LE+
Sbjct: 239 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|95931101|ref|ZP_01313827.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
gi|95132846|gb|EAT14519.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
Length = 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 121/300 (40%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
+ S+M A +CPQ V + + YR S++ +I E Y
Sbjct: 56 IHSAMASSRAYRLCPQALFV-------RPRMEVYRQVSSQIRAIF------------EHY 96
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
DL + P SLDE L L D + AT W+ R
Sbjct: 97 TDLIE----------PLSLDEA--------FLDLTMSDRQPNSAT---WIAR-------- 127
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
E+ ++ +ETE T SAG+++NK LAK+AS +KPA T + +
Sbjct: 128 ----------EILERIHRETELTASAGVSYNKFLAKVASDCHKPAGLTVITPDQASDFIA 177
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LPI++ + GK+ LG+T DLLK+ E +L +G G + + IARGI
Sbjct: 178 QLPIRRFFGV-GKVTEKKMLRLGITCGADLLKYPETELIRLFG-KQGRFFYRIARGIDER 235
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V A H KS L + + + L+E++ L + A+T+TL
Sbjct: 236 PVVA------HRQRKSIGNETTLSEDIRNRDQMLTILSALAEKIEGRLAHYQTSAYTITL 289
>gi|228477003|ref|ZP_04061641.1| DNA polymerase IV [Streptococcus salivarius SK126]
gi|228251022|gb|EEK10193.1| DNA polymerase IV [Streptococcus salivarius SK126]
Length = 368
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYNIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|322373597|ref|ZP_08048133.1| DNA polymerase IV [Streptococcus sp. C150]
gi|321278639|gb|EFX55708.1| DNA polymerase IV [Streptococcus sp. C150]
Length = 365
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|88800716|ref|ZP_01116275.1| DNA polymerase IV [Reinekea blandensis MED297]
gi|88776580|gb|EAR07796.1| DNA polymerase IV [Reinekea sp. MED297]
Length = 365
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 4/160 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
++ +R ++++ET T SAGIA NK LAK+AS KP ++ +V L SLP+KK
Sbjct: 121 MLAEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G K L E G+ T GD+L++S +L + +G +G WL+ ARGI V R
Sbjct: 181 INGVGSKFSQKLA-EHGLHTCGDVLRWSLPRLTQYFG-KSGLWLYQRARGIDHRPVGVRS 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 287
KS +F A ++ Q L L + L+ RL +
Sbjct: 239 DRKSLSVEHTFDTDLAGESACLTQ--LTPLLDTLNRRLAA 276
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGIQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|444729661|gb|ELW70070.1| DNA polymerase iota [Tupaia chinensis]
Length = 617
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 36/276 (13%)
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLC 112
ER DE ++DLT+ E L + DE+ + H+ +++
Sbjct: 24 ERLGFDENFVDLTEMVEKRLQQL---QSDELPTMTVSGHVYN-------------NQYIN 67
Query: 113 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
D H L+ G I E+R + + T AG+A NK+LAKL SG+ KP QQT +
Sbjct: 68 LHDILHIRLLI--GSHIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGIFKPNQQTVLL 125
Query: 173 FSSVKGLLDSL-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
S + L+ SL IK+M +G K L+ LG+ +V DL FS L++ G + +
Sbjct: 126 PESCQDLIHSLNHIKEMPGIGYKTAKRLE-ALGIHSVRDLQTFSSKILEKELGISVAQRI 184
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS---VQHWLNQLCEELSERLCSD 288
++ G E + ++P G +SF + K +S V+ + +L L R+C
Sbjct: 185 QKLSFG----EDNSPVIPS--GPVQSFSEEDSFKKCSSEVEVKKKIEELLASLLNRVC-- 236
Query: 289 LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL 324
Q+ R HT+ L + S SR+ S+ CP+
Sbjct: 237 --QDGRKPHTVRLIIRRYSSEKHYSRE---SRQCPI 267
>gi|55823560|ref|YP_142001.1| DNA polymerase IV [Streptococcus thermophilus CNRZ1066]
gi|81559009|sp|Q5LYC2.1|DPO4_STRT1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55739545|gb|AAV63186.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus
CNRZ1066]
Length = 367
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 140/351 (39%), Gaps = 84/351 (23%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIHRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAMCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ------AGLR 344
L + R P L A+I++ ++F AG+R
Sbjct: 298 VLKVRYADFTTLTKRVTLPE----LTRNVAQIEQVAGDIFDSLSENPAGIR 344
>gi|377809466|ref|YP_005004687.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056207|gb|AEV95011.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
Length = 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 122/308 (39%), Gaps = 66/308 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M EA E+CP K D + YR ++ I E ++DE
Sbjct: 65 VHSAMSASEALELCPD-------AIFKKPDFTKYREVSHQIHEIFHEYTDEIEPVALDEA 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ K+ +DS
Sbjct: 118 YLDVTN-----------------------------NKKNMSDS----------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
VLI E++ ++ +T TCS GI++NK LAKLAS KP V V L
Sbjct: 132 ------VLIAHEIQKEIFAKTNLTCSTGISYNKFLAKLASEYEKPVGVAMVFPEDVTDFL 185
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ +PI+ + +G K + ++LGV DLL FSE L +G G L+ RGI
Sbjct: 186 NDMPIESFRGVGKKTIPKM-HDLGVHFGRDLLSFSESDLIHYFG-KFGYVLYRQVRGIDD 243
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + KS G ++ P L T V+ L + + L + + + + K I L
Sbjct: 244 RPVAYQRERKSIGKEDTYINP--LTTDEEVELQLRIIAQNLLKYVTNQQKHGKTIV--LK 299
Query: 301 LHASAFKS 308
L + F++
Sbjct: 300 LRYTDFET 307
>gi|114566886|ref|YP_754040.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337821|gb|ABI68669.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 393
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 129/310 (41%), Gaps = 70/310 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEV 60
+ S+M +A +CPQ + V + R Y +V SIL+R E SIDE
Sbjct: 56 IRSAMPIAQAYRLCPQAVFLPVNMPR-------YLEISKQVFSILSRYSPIKEIISIDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++ G S G+ K
Sbjct: 109 FLDIS----------------------------GCSSLYGSPEK---------------- 124
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ C ++ E QV E T S GI++NK LAKLAS M+KP + S LL
Sbjct: 125 --IGC---LINE---QVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ ++ +G K SL ++LG+ T+GD+ + L++ G + G W +A GI
Sbjct: 177 RPLPVSRIWGIGQKTEQSL-DKLGIKTIGDIQDSPPEWLEDKIG-SAGRLFWELAHGIDR 234
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ KS G ++F P + A +L +L + + LC L Q A T+T
Sbjct: 235 RAVEPEHERKSLGREETF--PEDINDTA----YLEKLIVQFAAELCRKLRQEALFAATIT 288
Query: 301 --LHASAFKS 308
L S FK+
Sbjct: 289 IKLRYSNFKT 298
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 111/264 (42%), Gaps = 62/264 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S+M +A CP LV VP YR ++ +I AR E S+DE
Sbjct: 57 VRSAMPSTKALRQCPS--LVFVP-----PRFEIYRAVSQQIRAIFARYTPLIEPLSLDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ ++ GL + +D+ A
Sbjct: 110 YLDVTE------------------------NLRGLPT--ASDTAA--------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
E+R ++L ET T SAG+++NK LAKLAS + KP Q +P +
Sbjct: 129 -----------EIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGAEFI 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LP+K+ +G + N LG+ T DL S + LQ+ +G +G W + IARG
Sbjct: 178 EGLPVKQFHGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHFG-RSGAWYYAIARGEDD 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRAL 264
V+ KS GS +F R L
Sbjct: 236 RPVEPNRPRKSSGSETTFSEDRLL 259
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D + + LI ++ ++L+ET T SAG+++NK LAK+AS M+KP +
Sbjct: 110 LDVTYTEAFNGSATLIAQAIKREILQETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRP 169
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ + +LP+ K +G T + N LG+ T DL + S +L E +G G + +N
Sbjct: 170 EQGEAFVAALPVGKFHGIGPATETKMHN-LGIHTGKDLREKSLTELTERFG-KAGQYYYN 227
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
IAR I V+++ + KS G +F + + S+ +L +L+ER+ L +
Sbjct: 228 IARAIDERPVRSQRIRKSLGKETTFA-----EDIHSIPELTAKLL-DLAERVFESLVKQN 281
Query: 294 RIAHTLTL 301
A T+T+
Sbjct: 282 LKARTITV 289
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D H L + +R Q+ +ET T SAGIA NK LAK+AS NKP Q +
Sbjct: 110 LDVTHNKGGLPSATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRP 169
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ V L LP++K+ + GK+ + +LG+ TVGDL S ++L +G G L+
Sbjct: 170 TKVLEFLQPLPVRKVPGV-GKVTQARLEQLGIHTVGDLATHSLEELAHYFG-RYGRRLYE 227
Query: 234 IARGISGEEVQ 244
+ARGI EVQ
Sbjct: 228 LARGIDEREVQ 238
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I +
Sbjct: 124 IANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + N G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGVGKASKKVMHNN-GIYTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|440229635|ref|YP_007343428.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
gi|440051340|gb|AGB81243.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Serratia marcescens FGI94]
Length = 354
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 119/291 (40%), Gaps = 73/291 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CPQ+ L+ +++Y+ A + I AR E S+DE
Sbjct: 53 VRSAMSTAMALKLCPQLTLL-------PGRMAAYKEASLHIRQIFARYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ + C+
Sbjct: 106 YLDVTDSPQ--------------------------------------------CNGS--- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS +NKP Q +P + V L
Sbjct: 119 -----ATLIAEEIRQAIFDELQLTASAGVAPIKFLAKIASDLNKPNGQYVIPPAQVGAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ K+ +G L+ ELG+ T D+ ++ L + +G G LW ++GI
Sbjct: 174 QQLPLGKIPGVGKVTAKRLE-ELGLHTCADVQRYDLAALLKRFG-KFGRVLWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL-SERLCSDLE 290
+V + L KS G ++ A + W CE L ++L +LE
Sbjct: 232 RQVSSERLRKSVGVERTL--------AADIHDWAE--CEALIVDKLYPELE 272
>gi|392542511|ref|ZP_10289648.1| DNA polymerase IV [Pseudoalteromonas piscicida JCM 20779]
Length = 374
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 109/258 (42%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V S+M +AK++CPQ LV VP + Y+ ++ +I AR E S+DE
Sbjct: 75 VRSAMSNYQAKKLCPQ--LVIVP-----GRMEVYKAISQQIRTIFARYTELIEPLSLDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ + C+
Sbjct: 128 YLDVTECQQ--------------------------------------------CNGS--- 140
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI ++R ++ ET T SAGIA K LAK+AS NKP Q +P V +
Sbjct: 141 -----ATLIAEQIRADIVAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFI 195
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D+LP+KK+ + GK+ +G+ D+ SE +L++S+G G LW +GI
Sbjct: 196 DALPLKKIPGV-GKVTQQRLLAMGLEYGRDIKALSEIQLRQSFG-KFGAVLWRRCQGIDE 253
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS G +F
Sbjct: 254 RRVETDRVRKSIGVETTF 271
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 128/307 (41%), Gaps = 73/307 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S M G AK++CP++ LV + R Y+ +V+ I R A DE
Sbjct: 390 VRSGMPGFIAKKLCPELILVNINFTR-------YQEMSDKVMDIFRRYDPNMLAAGCDEG 442
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YL++T E +H
Sbjct: 443 YLNITAYCE-----------------------------------------------EHNL 455
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKG 178
AC V E+R V KET T SAGIA NKMLAK+ S NKP Q +PF S+K
Sbjct: 456 DPQAC----VQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPFDRESIKS 511
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIAR 236
+ LPI+++ + G++ L + +G+ T GD+ + + + + +G +L I
Sbjct: 512 FMQDLPIRRIPGV-GRVNERLLDAIGIKTCGDIYTHRATLSLMDKQFGLQ---FLLRIHL 567
Query: 237 GISGEEVQA--RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
GI+ V+ R K + F R T++ Q LN+L EE++ L D E+N
Sbjct: 568 GIASNVVEPGKREERKIASAKVHF---RTFSTLSDRQQILNKL-EEVAAELEDDTERNGW 623
Query: 295 IAHTLTL 301
T+TL
Sbjct: 624 TGKTVTL 630
>gi|226292210|gb|EEH47630.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb18]
Length = 1161
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 52/293 (17%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A IL+ G + SIDE +D+
Sbjct: 423 MKG--ALQMCPNLKVLPY-------DFAAYEEASRNFYDVILSIDGIVQSVSIDEALVDI 473
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ LD A S +G+ S+ ++ + D
Sbjct: 474 TNIC-----------LD-----AGGSDGIGI-------SEGSIYREQAKADE-------- 502
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR V ++T S GI N + A++A KPA Q + +V+ + L
Sbjct: 503 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELT 558
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+K + + LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV
Sbjct: 559 VKDLPGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVG 617
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 295
++ KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 618 IQVPRKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|261338292|ref|ZP_05966176.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
gi|270276954|gb|EFA22808.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
Length = 502
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R QV + TCS GIA NK++AK+AS KP +P + + +P++ +
Sbjct: 140 IARWIRAQVAERFHITCSVGIACNKLVAKMASTNAKPDGMLLIPANRSADFVQLMPLRGI 199
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT-WLWNIARGISGEEVQARL 247
+G L L N G+T+V +L +SE +L ++ G +G LW ARGI EV +
Sbjct: 200 PGIGPALERRL-NSWGITSVTELATYSEQELAQATGSASGAHHLWQAARGIDLREVVTQR 258
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
KS GS +F + A V+ L++ CE+++ S L + + +A T+T+
Sbjct: 259 EEKSIGSEHTF--AQDTTDAAVVRSLLHRCCEDVA----STLRRKELLARTVTV------ 306
Query: 308 SSDSDSRKKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFLGSFGVKT 354
+ + P S R T + D +L+ A L + G++T
Sbjct: 307 ------KLRLPDLSYMTRSYTMERPTDMGADLYAATLDQLYTMLGMRT 348
>gi|406659771|ref|ZP_11067909.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
gi|405577880|gb|EKB52028.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
Length = 364
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP + + S Y+ G E+ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPHAVFIS-------GNYSKYKEVGLEIRQIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTENK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I ++ + +E TCSAG+++NK LAKLAS KP T V + L +
Sbjct: 132 ---AMKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYEKPHGLTLVLPEDAQNFLAA 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K +L N +GV DLL+ SE +L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVETL-NAMGVYKGADLLELSEMQLIDQFG-RFGYDLYRKARGISLSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKPDRIRKSIGSERTY 262
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|357639281|ref|ZP_09137154.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|418417287|ref|ZP_12990483.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
gi|357587735|gb|EHJ57143.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|410871763|gb|EKS19709.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
Length = 364
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA + CPQ + + + Y+ G EV +I R E SIDE YL
Sbjct: 68 SAMSSKEAFDKCPQAIFIS-------GNYAKYKAVGLEVRAIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ + D ++ +K
Sbjct: 121 DVTE--------------------------------NKLDIQSAIK-------------- 134
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
I ++ + E TCSAG+++NK LAKLAS KP T V + L +
Sbjct: 135 ------IAKLIQHDIWNELHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDAQEFLKA 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +E+GV T DLL SE L + +G G L+ ARGI
Sbjct: 189 LPIEKFHGVGKKSVEKL-HEMGVFTGEDLLNISEMTLIDQFG-CFGYDLFRKARGIHYSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V+ + KS GS +++ A + + + E+S ER+ LE+N +I L
Sbjct: 247 VKPNRIRKSIGSERTY---------AKLLYQDEDVKTEISHNVERVVKTLEKNGKIGKVL 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|295673426|ref|XP_002797259.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282631|gb|EEH38197.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1160
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 52/293 (17%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A +L + G + SIDE +D+
Sbjct: 422 MKG--ALQMCPHLKVLPY-------DFAAYEEASRNFYDVLLSIDGIVQSVSIDEALVDI 472
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ LD A S +G+ S+ ++ + D
Sbjct: 473 TNIC-----------LD-----AGGSDGIGI-------SEGSIYREQAKADE-------- 501
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR V ++T S GI N + A++A KPA Q + +V+ + L
Sbjct: 502 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELT 557
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+K + + LG L+ ELGV V D+ + S++KL S G TG LWN ARGI EV
Sbjct: 558 VKDLPGVAHSLGGKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVG 616
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 295
++ KS + S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 617 IQVPRKSVSAEISW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 665
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+++CP++ V + D Y SE+ I +++
Sbjct: 58 VKSAMSGRLAEKLCPELIFV-------RTDFERY----SEI-----------SKRIRKIF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE +++ E+K G
Sbjct: 96 YDYTDLVE-------PLSLDE-------AYLDVTENKIG--------------------- 120
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L LI ++R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 121 -LPSATLIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPEDVLQFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L I+K + GK+ + G+ T DL S D L++++G +G ++I RGI
Sbjct: 180 DLDIRKFYGV-GKVTAEKMYQKGIFTGKDLKSKSADYLEKNFG-KSGRSYYHIVRGIHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+V+ + KS + ++F L + + L Q+ EE+S+R L+++K T+TL
Sbjct: 238 KVKPNRIRKSLAAERTF--RENLSSEIFMLEKLRQIAEEVSKR----LDKSKVAGKTITL 291
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA + +R Q+ +ET T SAG+A NK LAK+AS NKP + S V L
Sbjct: 119 LASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSRVLDFLQP 178
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K+ +G + L+ +LG+ TVGDL + S +L++ +G G L+ +ARGI
Sbjct: 179 LPVRKVPGVGKVMQARLE-QLGIQTVGDLSRHSVAELEQRFG-RYGVRLYELARGIDERA 236
Query: 243 VQA 245
VQA
Sbjct: 237 VQA 239
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 75/354 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 60
V S+M G A+++CP++ V K + Y+ ++ I L E S+DE
Sbjct: 58 VRSAMSGAMARKLCPELIFV-------KTNFDRYKEVSKQIRKIFLEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S + + E
Sbjct: 111 YLDVT------------------------------ENKKGNPSASMIAE----------- 129
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
E+R ++ K+T SAGI+ NK +AK+AS +NKP Q T+ V L
Sbjct: 130 -----------EIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSPEEVVPFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
++L +KK + GK+ LG+ T DL S + L+E++G +G + N+ RGI
Sbjct: 179 ETLDVKKFYGV-GKVTKEKMYRLGIYTGKDLKGKSLEFLEENFG-KSGAFYHNVVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
+V+ KS + +F + ++S + ++ + +E++ + L ++K T+T
Sbjct: 237 SKVKPSRTQKSLAAEHTF-----FENISS-EIFMMERLDEIAAEVEKRLHKSKLAGKTVT 290
Query: 301 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 352
L K SD + SK+ PL + ++ D LFQ ++E + G+
Sbjct: 291 L-----KIKYSDFTLQTRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGI 339
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 123/302 (40%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKYDRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|414563270|ref|YP_006042231.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338846335|gb|AEJ24547.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 367
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + D + YR G ++ I R + E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFKRYTDQVEPVSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T ++ LG++S
Sbjct: 121 DVT------------------------TNKLGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I ++ + TCSAG+++NK LAKLAS KP T V L+
Sbjct: 132 ---ALKIARLIQYDIWNSLHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTL 299
V+ + KS S +++ A + + + ELS+ R+ LE NK++ +
Sbjct: 247 VKPNRIRKSISSERTY---------AKLLYQEADIKAELSKNASRVADLLEANKKLGRII 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|312796318|ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica HKI 454]
gi|312168093|emb|CBW75096.1| DNA polymerase IV (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
Length = 388
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 12/189 (6%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ ++ V T TCS +A NK+LAK+ S ++KP T + + + + LP++++
Sbjct: 142 LAMRIKQAVRDATGLTCSICVAPNKLLAKIGSELDKPDGMTILSIADLPTRIWPLPVRRV 201
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K G L + LG+ TVGDL K LQE +G + WL ++A GI VQ
Sbjct: 202 NGIGPKAGEKLVS-LGIATVGDLAKADPGLLQEHFGHSYAAWLADVAHGIDERPVQVTSE 260
Query: 249 PKSHGSGKSFPGPRALKTVASVQH---WLNQLCEELSERLCSDLEQNKRIAHT--LTLHA 303
PKS +F + V+H L+ + +L R+ DL + + T L L
Sbjct: 261 PKSMSRETTF------ERDMHVRHDRASLSAIFTDLCVRVAQDLTRKGYVGRTVGLKLRY 314
Query: 304 SAFKSSDSD 312
+ F++ D
Sbjct: 315 ADFRTVTRD 323
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 121/300 (40%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK+ CPQI V K Y+ ++ +I +
Sbjct: 55 VRSAMSSVVAKKKCPQIIFV-------KPRFHRYKEVSEQIRTI---------------F 92
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D H K
Sbjct: 93 FEYTDLVE-------PLSLDE-----------------------------AYLDVTHNKK 116
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L+
Sbjct: 117 GIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLE 176
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LPI++ +G + +LG+ DL + + L +G G ++I RGI
Sbjct: 177 NLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYDIVRGIHRS 234
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS G ++ + T + L +L +EL R +E+ K +LTL
Sbjct: 235 EVKPHRIAKSVGVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKKVKGKSLTL 288
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L SLP+ ++
Sbjct: 124 IARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLSLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|422874487|ref|ZP_16920972.1| DNA polymerase IV [Clostridium perfringens F262]
gi|380304560|gb|EIA16848.1| DNA polymerase IV [Clostridium perfringens F262]
Length = 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L+++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIKEMIEILDKIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 121/300 (40%), Gaps = 66/300 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK+ CPQI V K Y+ ++ +I +
Sbjct: 43 VRSAMSSVVAKKKCPQIIFV-------KPRFHRYKEVSEQIRTI---------------F 80
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D H K
Sbjct: 81 FEYTDLVE-------PLSLDE-----------------------------AYLDVTHNKK 104
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ LI E+R ++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L+
Sbjct: 105 GIVSANLIAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLE 164
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LPI++ +G + +LG+ DL + + L +G G ++I RGI
Sbjct: 165 NLPIERFYGIGNVTANKMY-QLGIYKGKDLKEKPLEYLVTHFG-KMGGHYYDIVRGIHRS 222
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
EV+ + KS G ++ + T + L +L +EL R +E+ K +LTL
Sbjct: 223 EVKPHRIAKSVGVEHTYVDD--IDTEQDIDKQLMRLAQELYRR----IEKKKVKGKSLTL 276
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPKIMAFLESLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|409201309|ref|ZP_11229512.1| DNA polymerase IV [Pseudoalteromonas flavipulchra JG1]
Length = 374
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEV 60
V S+M +AK++CPQ+ +V + Y+ ++ +I AR E S+DE
Sbjct: 75 VRSAMSNYQAKKLCPQLVIV-------SGRMEVYKAISQQIRTIFARYTELIEPLSLDEA 127
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ + C+
Sbjct: 128 YLDVTECQQ--------------------------------------------CNGS--- 140
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI ++R + ET T SAGIA K LAK+AS NKP Q +P V +
Sbjct: 141 -----ATLIAEQIRADIFAETGLTASAGIAPIKFLAKIASDENKPNGQCVIPPHQVSAFI 195
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D+LP+KK+ + GK+ +G+ D+ SE +L++S+G G LW +GI
Sbjct: 196 DALPLKKIPGV-GKVTQQRLLAMGLEYGRDIKALSETQLRQSFG-KFGAVLWRRCQGIDE 253
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS G +F
Sbjct: 254 RRVETDRVRKSIGVETTF 271
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 8/181 (4%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ + I +++ ++ +E T SAG++ NK +AK+AS +NKP T + S V ++
Sbjct: 110 IGSAIDIARQIKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEH 169
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K + GK+ S +LG+ D+ +++++ L +G TG + +NI RGI
Sbjct: 170 LPIEKFFGV-GKVTASKMKKLGIYRGADMKQWTQEALTRHFG-KTGEFFYNIVRGIDNRP 227
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
VQ KS +F + +A +Q L + +ELS RL L + T+TL
Sbjct: 228 VQPNRQTKSISVEDTFA-----QDIADIQ-VLEDILKELSVRLVKRLNAKELAGKTVTLK 281
Query: 303 A 303
Sbjct: 282 V 282
>gi|195977472|ref|YP_002122716.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974177|gb|ACG61703.1| DNA polymerase IV DinB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 367
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + D + YR G ++ I R + E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GDHAKYRRIGYDIREIFRRYTDQVEPVSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T S+ LG++S
Sbjct: 121 DVT------------------------SNKLGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I ++ + TCSAG+++NK LAKLAS KP T V L+
Sbjct: 132 ---ALKIARLIQYDIWNSLHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G + L +E+G+ T DLL+ E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKRTVERL-HEMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTL 299
V+ + KS S +++ A + + + E+S+ R+ LE NK++ +
Sbjct: 247 VKPNRIRKSISSERTY---------AKLLYQEADIKAEISKNASRVADLLEANKKLGRII 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 183 PGV-GKVTLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|322831681|ref|YP_004211708.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|384256795|ref|YP_005400729.1| DNA polymerase IV [Rahnella aquatilis HX2]
gi|321166882|gb|ADW72581.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|380752771|gb|AFE57162.1| DNA polymerase IV [Rahnella aquatilis HX2]
Length = 352
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 18/247 (7%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D H + LI E+R + E T SAGIA K LAK+AS +NKP Q +
Sbjct: 108 DVSHATQCNGSATLIAAEIRQAIFDEINLTASAGIAPIKFLAKIASDLNKPNGQFVITPE 167
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
V L LP+ K+ +G LQ E G+ T GD+ ++ KL + +G G LW
Sbjct: 168 KVGAFLQDLPLSKIPGVGKVTAQRLQ-EQGLITCGDVQRYDLAKLLKRFG-KFGRVLWER 225
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-K 293
+GI E+ L KS G ++ + W + C L ERL +L+
Sbjct: 226 CQGIDEREISPERLRKSVGVERTL--------AEDIHSW--EECVSLIERLYPELQTRLS 275
Query: 294 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 353
R++ L + K D ++ P+ +ED + + + G GV+
Sbjct: 276 RVSPDLRIARQGVKLKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEQRRGGRGVR 330
Query: 354 TQGSHYS 360
G H +
Sbjct: 331 LVGLHVT 337
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFALYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + + +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALFQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYECCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|415942136|ref|ZP_11555864.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
gi|407758923|gb|EKF68687.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
Length = 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
IV + V + T+ TCS GIA NK+LAKL S + KP T V + + +P+ K+
Sbjct: 111 IVAMFKRSVFEATQLTCSVGIAPNKLLAKLCSDIQKPDGFTIVTMEDIPDRIWPMPVSKI 170
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L + L + T+G+L ED L E++G + G WL+ ++ GI V
Sbjct: 171 NGIGPKSAKKL-DALAIRTIGELAACREDWLVENFGRSYGAWLYRVSHGIDDRPVVTESE 229
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
P S +F R L V ++ L + L E++ +DL++
Sbjct: 230 PVSMSRETTF--ERDLDAVRD-RNELGAIFTRLCEQVAADLDRK 270
>gi|400288102|ref|ZP_10790134.1| DNA-directed DNA polymerase [Psychrobacter sp. PAMC 21119]
Length = 361
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 127/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA++ CP + V R + D+ YR S++ SI+ R E S+DE
Sbjct: 61 VRSAMSCYEARKRCPDVVFV-----RPRFDV--YRAVSSDIRSIMHRLTPHVEPLSLDEA 113
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T GL+ + G S + WL
Sbjct: 114 YLDVT----------------------------GLQVQQG--SATLMANWL--------- 134
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R Q+L++T T SAG++ NKMLAK+AS +NKP + + +
Sbjct: 135 -------------RAQILEQTGLTASAGVSFNKMLAKIASDINKPNGTAIITPADADAFI 181
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LPI++ +G T L + +GV+ DL + L + +G G + +IA G
Sbjct: 182 STLPIERFHGIGKATATRL-HAMGVSNGADLRRIPAAVLVQEFG-KRGQFYHDIAHGRDE 239
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V++ KS GS +F + S L E ++ +++ + IA+T+T
Sbjct: 240 RPVKSERTHKSVGSETTF------RDNLSDNDALRAQIYEQNDDAFGQMQKKQLIAYTIT 293
Query: 301 L 301
+
Sbjct: 294 I 294
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 62/285 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A E CP + +V+ R K R+ +E ++ E S+DE Y
Sbjct: 54 VRSAMPGRLALEKCPHLIVVKPRFQRYKEISQQIRSIFNEYTDLV------EPLSLDEAY 107
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
LD+T+ + G+ES ND
Sbjct: 108 LDVTENKK------------------------GIES--AND------------------- 122
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
I E+R ++ +ET T SAGI+ NK LAK+AS NKP Q T+ + + ++
Sbjct: 123 -------IAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQILEFME 175
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LPI+K + GK+ + +E+ + DL S ++L +G +G + +N+ RGI
Sbjct: 176 ELPIEKFYGI-GKVTANKMHEMHIFKGADLKNKSLEELIRLFG-KSGNYYYNVVRGIHNS 233
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
EV+ + KS ++F L V L + EEL ERL
Sbjct: 234 EVKPHRIQKSVAVEETFWD--NLLDEEQVFAQLKTISEELEERLL 276
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R + ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I
Sbjct: 124 IANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMHLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ T DL E +L +G G L+N ARGI EV+A +
Sbjct: 184 PGV-GKASKKVMHDNGIFTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|445382141|ref|ZP_21427208.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
gi|445394949|ref|ZP_21428942.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748710|gb|ELW73666.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748845|gb|ELW73795.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
Length = 367
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 EKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEMTLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 121/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S++ EA E CPQ + + Y+ G ++ I R + E SIDE YL
Sbjct: 68 SAISSKEAYERCPQAVFIS-------GNYHKYKEIGYQIREIFKRYTDQVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T LGL+S
Sbjct: 121 DVTQNK------------------------LGLKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T + L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDYQKPHGLTLILPEDALTFLKE 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI K +G K L+ E+G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIAKFHGVGKKSVIKLE-EMGIFTGADLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+A + KS GS +++ + L V+ +++ LSE L S N++ TL L
Sbjct: 247 VKANRIRKSIGSERTY--GKLLYEEKDVKAEISKNASRLSELLKS----NQKSGKTLVL 299
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 13/253 (5%)
Query: 117 DH-RDKLLACGVLIVTELRMQVLKETE-FTCSAGIAHNKMLAKLASGMNKPAQQTTVP-- 172
DH R + G ++ ++R +V + T TCSAG+A N +L+K+AS NKP Q VP
Sbjct: 199 DHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNFLLSKIASDRNKPNGQCLVPSD 258
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
S+ G L LP +K+ + G++ + + G+ TV DL + ++ + + +L
Sbjct: 259 HESIIGFLHPLPTRKVSGI-GRVTAKILSSFGIATVADLYR-ERSLVRFLFQEASAEFLL 316
Query: 233 NIARGISG-EEVQARLLPKSHGSGKSFPGPRALKTVASVQHW--LNQLCEELSERLCSDL 289
+ G SG +E A + G G+ G +T A+ + W +N EE++E L SD+
Sbjct: 317 RASIGCSGSDERNADDVETDDGPGQK--GISRERTFAAKESWTAINLKLEEIAELLSSDM 374
Query: 290 EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGS 349
+ AHT+T+ +S D SR + + ++ A ++ +L + EF GS
Sbjct: 375 KHKNIFAHTVTVKVK-LRSFDCLSRSRSLGRGVFIQ-AAADLRPIALDLLRELKDEFSGS 432
Query: 350 FGVKTQGSHYSGW 362
F V+ G S +
Sbjct: 433 FAVRLLGIRCSSF 445
>gi|225377127|ref|ZP_03754348.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
gi|225211032|gb|EEG93386.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
Length = 405
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
CD +KL + T+L+ ++ KE FT + GI+ NK+LAK+AS KP + T+
Sbjct: 123 CDMTGTEKLYGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNRVHTLFP 182
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ LP++ + G L++ LG+TT+G L K L ++ + G +LW
Sbjct: 183 EEMATKFWPLPVESLYGCGKTTAKRLRS-LGITTIGALAKADRQMLLSNFK-SQGDYLWE 240
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 288
A GIS V A P + G G S P + + H L LCE + R+ D
Sbjct: 241 SANGISSSAVTAE-SPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYD 294
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + +++V ++ SL I
Sbjct: 124 IAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVIDYNNVHDIIMSLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ + T DL + SE +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNDIYTGQDLYQKSEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRI 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G+ ++F V + L ++ ELS + L + ++ A T+T+ ++
Sbjct: 242 RKSIGTERTFA-----TDVNDDEQILRKVW-ELSGKTAERLNELQKSAKTVTVKIKTYQF 295
Query: 309 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREF 346
SK LR + + D +N+ A E
Sbjct: 296 ETY-------SKQTSLR-DSVNTENDIYNIAYALYNEL 325
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 50 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 102
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 103 DVT------------------------------ENKLG---------------------- 110
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 111 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 170
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 171 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 228
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 229 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 281
>gi|168209362|ref|ZP_02634987.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
gi|170712467|gb|EDT24649.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
Length = 359
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVALTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L+ I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V L
Sbjct: 115 LSTATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTP 174
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G + L LG+ TVGDL E +L+ +G + G L+ ARGI
Sbjct: 175 LPVSKVHGVGKVMQAKL-AALGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDPRP 232
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+A +S S +F AL +A L+E+ + + +RIA T+ L
Sbjct: 233 VEANQQVQSISSEDTFAEDLALDALAPA-------IRLLAEKTWTATRRTERIARTVVL 284
>gi|168261272|ref|ZP_02683245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|205350046|gb|EDZ36677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 351
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQRCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|238787934|ref|ZP_04631730.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
gi|238723882|gb|EEQ15526.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
Length = 352
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQSIAAELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G + LQ ELG+ T D+ FS+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTASKLQ-ELGLLTCSDVQHFSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W + CE L E+L ++LE R
Sbjct: 237 DRLRKSVGVERTL--------AEDIHDWSS--CESLIEQLYTELETRLR 275
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|422316729|ref|ZP_16398113.1| DNA polymerase IV [Fusobacterium periodonticum D10]
gi|404590701|gb|EKA93027.1| DNA polymerase IV [Fusobacterium periodonticum D10]
Length = 352
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 71/328 (21%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYL 62
S+M+ +AK +CP+ L+ +PV D Y +E+ + IL + E + DE Y+
Sbjct: 51 SAMKVSDAKLLCPK--LIAIPV-----DKKEYIRISNEIHNLILKITNKVEFIATDEGYI 103
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
DLT + PE+ + ALK K +KE
Sbjct: 104 DLTGIVK-------PENKKQF---ALKF-------------KERIKEL------------ 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
T TCS GI NK+ AK+AS +NKP F + K ++
Sbjct: 129 ------------------TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKNFIEY 168
Query: 183 LPIKKMKQL---GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+ KK+K + G K L+++ + V D+ K+S D L + YG + G L+ RGI+
Sbjct: 169 ISDKKIKIIPGVGRKFSEILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGIN 227
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+EV+ S G+ +++ P L+T++ ++ N L E +RL + ++ I T+
Sbjct: 228 HDEVEYEREIHSIGNEETYSIP--LQTISELEREFNSLFEYTYQRLIKNNVFSQSI--TV 283
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYG 327
+ ++FK+ + KF +K Y
Sbjct: 284 KIRYTSFKTYTKSKKLKFATKDKDFLYN 311
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 118/284 (41%), Gaps = 62/284 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A CP++ V+ R K +LS+ I E++
Sbjct: 55 VRSAMSGKLAALKCPKLVFVKPRFDRYK-ELSN---------------------QIREIF 92
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE L + N+ AT
Sbjct: 93 YDYTDLVE-------PLSLDEA--------FLDVTENKVNNPSAT--------------- 122
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L+
Sbjct: 123 ------LIAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLE 176
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LPI+K + GK+ +G+ DL +FS L + +G +G +NI RGI
Sbjct: 177 KLPIEKFFGI-GKVTAEKMKSIGIHNGHDLKQFSIQYLTKKFG-KSGLHFFNIVRGIHLS 234
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
EVQ + KS + +F + L S + L ++ EEL R+
Sbjct: 235 EVQPNRIRKSLSAENTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|400290800|ref|ZP_10792827.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
gi|399921591|gb|EJN94408.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
Length = 368
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 103/256 (40%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ V + + + YR G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAVFV-------RGNYAKYREIGMQVRDIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E P+
Sbjct: 121 DVT--------ENKPK-------------------------------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ V I ++ + E TCSAG+++NK LAKLAS NKP T + + L
Sbjct: 129 IKSAVKIAKLIQHDIWNELHLTCSAGVSYNKFLAKLASDYNKPRGLTVILPDEAEEFLAD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +EL V T DL + E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKKSVEKL-HELNVFTGKDLQQIPEMTLIDLFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKNNRIRKSIGSERTY 262
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + LI E++ ++++ T+ T SAG+++NK LAKLAS KP +
Sbjct: 107 LDVTENLKKMRSATLIAQEIKQRIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGP 166
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ + +L + K + GK+ N+LG+ T DL +E L+ +G G++ +N
Sbjct: 167 DEGEAFVANLTVNKFHGI-GKVTAEKMNQLGIQTGMDLKSKTEFFLRTHFG-KMGSYYYN 224
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
IARGI V+A + KS GS +F R L+T+A ++ L L E++
Sbjct: 225 IARGIDQRPVEADRIRKSVGSENTF--DRDLETLAEMEGGLLPLIEDV 270
>gi|74202822|dbj|BAE37492.1| unnamed protein product [Mus musculus]
Length = 267
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 78 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 131
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 132 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 173
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 174 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 233
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 214
IK++ +G K L+ LG+ +V DL F
Sbjct: 234 HIKEIPGIGYKTAKRLE-VLGINSVHDLQTF 263
>gi|241663231|ref|YP_002981591.1| DNA polymerase IV [Ralstonia pickettii 12D]
gi|240865258|gb|ACS62919.1| DNA-directed DNA polymerase [Ralstonia pickettii 12D]
Length = 357
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L A G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 115 LAASGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP+ ++ + GK+ + LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 175 ELPVDRLFGV-GKVTAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELSVLVEQLAARV 274
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 40 SEVVSILARKGRCERAS--IDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLES 97
S++V + R R + S I E++ D TD E P SLDE L +
Sbjct: 69 SKLVFVKPRFDRYKELSNQIREIFYDYTDLVE-------PLSLDEA--------FLDVTE 113
Query: 98 KDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAK 157
N+ AT LI E+R ++ +E SAGI++NK LAK
Sbjct: 114 NKVNNPSAT---------------------LIAQEIRDRIKEEVGLNASAGISYNKFLAK 152
Query: 158 LASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSED 217
AS +NKP Q + + L+ LPI+K + GK+ +G+ DL +FS
Sbjct: 153 TASDINKPNGQAVILPKEAEAFLEKLPIEKFFGI-GKVTAEKMKSIGIHNGHDLKQFSLQ 211
Query: 218 KLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
L + +G +G +NI RGI EVQ + KS + +F + L S + L ++
Sbjct: 212 YLTKKFG-KSGLHFFNIVRGIHLSEVQPNRIRKSLSAENTF--EKDLSDRVSFEAALLEI 268
Query: 278 CEELSERL 285
EEL R+
Sbjct: 269 FEELKRRI 276
>gi|387784781|ref|YP_006070864.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
gi|338745663|emb|CCB96029.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
Length = 369
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T + LG++S
Sbjct: 119 YLDVT------------------------INKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K+ +
Sbjct: 128 IRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAKVLAFLEPLPVRKVPGV- 186
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
GK+ + +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 187 GKVTQARLEQLGIHTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 237
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 132/313 (42%), Gaps = 69/313 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M +A+++CPQ L+ +PV YR +V +I R Y
Sbjct: 55 VRSAMPVFQARQLCPQ--LIILPV-----RFELYRTISKQVRAIFHR------------Y 95
Query: 62 LDLTDAAEAMLAETPPESLDE--VDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 119
DL + P SLDE +D LK
Sbjct: 96 TDLVE----------PLSLDEAYLDVSQLKQR---------------------------- 117
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
G I TE+R + +ET T SAGIA NK++AK+AS NKP Q V S V+
Sbjct: 118 ------GAEIATEIRSTIERETGLTASAGIAPNKLIAKIASDWNKPNGQCIVGPSKVEAF 171
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+ LPI+K+ +G K ELG+ T G L + + +L +G + G L+ + RGI
Sbjct: 172 MRPLPIRKIWGIGPKSAQRF-AELGIETCGQLQELDQTQLTHRFG-SFGFELYKLCRGID 229
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
V+ + KS +F + L+T+ + + L + +EL + L + + +
Sbjct: 230 ERPVEPNRIRKSLSCEHTF--QQNLETLRACESQLERQFDELLQDLRASAPDRQITKLVI 287
Query: 300 TLHASAFKSSDSD 312
L + F+ + ++
Sbjct: 288 KLKFADFRQTTAE 300
>gi|255555247|ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
gi|223542041|gb|EEF43585.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
Length = 1200
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 142/361 (39%), Gaps = 71/361 (19%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAA 68
+AK +CPQ L+ P + +Y + ++L + + + S DE +LD+TD +
Sbjct: 425 DAKALCPQ--LIIFPY-----NFQAYEEVADQFYNVLHKHCNKVQAVSCDEAFLDITDFS 477
Query: 69 EAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVL 128
D E L S I
Sbjct: 478 GG-------------DPEVLASTI------------------------------------ 488
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
R ++ + T T SAGIA N +L++LA+ KP Q + V L+ L IK +
Sbjct: 489 -----RKEIFETTGCTASAGIARNMLLSRLATRTAKPDGQCYIRPEKVDEYLNELSIKTL 543
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G L L+ + V T G L S+D L + +G TG LWN +RGI V
Sbjct: 544 PGIGHVLEEKLKKK-NVRTCGQLRLISKDSLHKDFGKKTGEMLWNYSRGIDNRLVGVIQE 602
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G+ ++ G R + + QH+L LC+E+S R L+ T TL +
Sbjct: 603 SKSIGAEVNW-GVR-FRNLQDSQHFLLNLCKEVSLR----LQGCGVHGRTFTLKIKKRRK 656
Query: 309 SDSDSRKKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 366
+ K C L + T + D ++ Q ++ GSF + + G +++
Sbjct: 657 DAGEPTKYMGCGDCENLSHSMTVPVATDDVDVLQRIAKQLFGSFNLDVKEIRGVGLQVSK 716
Query: 367 L 367
L
Sbjct: 717 L 717
>gi|398832290|ref|ZP_10590451.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
gi|398223387|gb|EJN09731.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
Length = 391
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 11/242 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I L+ V + T+ TCS GIA NK+LAKL S M KP T V + + + ++K+
Sbjct: 144 IARRLKSAVFEATQLTCSVGIAPNKLLAKLCSDMQKPDGITIVTMDDLPSRIWPMDVRKI 203
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L+ LG+ ++G+L +ED L E +G + G WL ++ G+ V
Sbjct: 204 NGIGPKSTARLEG-LGIRSIGELAACAEDWLLEHFGQSYGRWLHRVSHGLDERPVVTHSE 262
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAF 306
P S +F R L V Q L ++ L +++ +DLE+ + + L F
Sbjct: 263 PVSMSRETTF--ERDLHAVRDRQQ-LGEVFTRLCQQVAADLERKGYVCRKIGIKLRFDDF 319
Query: 307 KSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 366
++ D FP+ PL TA L + L + GVK G G A
Sbjct: 320 ETVTRDV--TFPT---PLGDATAIRHAAGTCLKRIELSRSIRLLGVKASGLQRPGADAAA 374
Query: 367 LS 368
+S
Sbjct: 375 VS 376
>gi|417503427|ref|ZP_12173976.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353652129|gb|EHC94042.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 304
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSIGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M +A ++CPQ+ R + D+ Y+ ++ I R E S+DE
Sbjct: 56 VKSAMSSRQALQLCPQLIF-----TRPRFDV--YKEVSQQIRQIFLRYTDLIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E K G
Sbjct: 109 YLDVT------------------------------EDKQG-------------------- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ + I +++ ++ +E T SAG++ NK +AK+AS +NKP T + S V +
Sbjct: 119 --IGSAIDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFM 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K + GK+ S +LG+ D+ +++++ L +G TG + +NI RG+
Sbjct: 177 EHLPIEKFFGV-GKVTASKMKKLGIHRGADMKQWTQEALTRHFG-KTGKFFYNIVRGVDN 234
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
VQ KS +F + +A +Q L + +ELS RL L + T+T
Sbjct: 235 RPVQPNRQTKSISVEDTFA-----QDIADLQ-VLEDILKELSGRLAKRLNAKQLAGKTVT 288
Query: 301 L 301
L
Sbjct: 289 L 289
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 145 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLQPLPVNRV 204
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 205 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 262
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+E+ + +R+ HT+ L
Sbjct: 263 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWKATRKTERVGHTVVL 308
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K +A I E+R ++ +ET+ + SAGI+ NK +AK+AS +NKP Q T+
Sbjct: 112 LDVTENKKGIATATRIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMP 171
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V L++LPIKK +G K ++ +LG+ DL ++ L +G +GT +N
Sbjct: 172 DDVIPFLENLPIKKFYGIGEKTAEKMK-KLGIHFGRDLKQWDLPLLVREFG-KSGTHYYN 229
Query: 234 IARGISGEEVQARLLPKSHGSGKSF 258
I RG+ V+ + KS G+ ++F
Sbjct: 230 IVRGLQKSTVKPDRIRKSIGAERTF 254
>gi|388258303|ref|ZP_10135479.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
gi|387937815|gb|EIK44370.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
Length = 355
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ +E T SAGIA NK LAK+AS NKP Q + + V + LP+KK+
Sbjct: 122 IAQEIRARIQREIGITVSAGIAPNKFLAKIASDWNKPNGQFVITPAQVDSFVAQLPVKKI 181
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + L EL + T DL K S +L + +G G+ L+ ++RGI E+
Sbjct: 182 FGVGKAMASKLA-ELSIFTCADLQKLSVFELSQRFG-QMGSRLYKLSRGIDERELTVDRR 239
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS +F + L+ + H L L ++L+ RL
Sbjct: 240 RKSLSVENTF--AKDLQNLPQCLHELPALSQQLAIRL 274
>gi|365905357|ref|ZP_09443116.1| DNA polymerase IV [Lactobacillus versmoldensis KCTC 3814]
Length = 357
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I L+ +++KET TCS GI++NK LAK+AS KP +T + + + L +PI+K
Sbjct: 119 IANYLQQRIVKETHLTCSVGISYNKFLAKMASDYRKPFGRTLILGAYAEDFLKPIPIEKF 178
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G L +E+ + T DL +D +++G G ++ GI V+ +
Sbjct: 179 NGIGKTTQKKL-HEMNIYTGADLQNLDQDTFLDTFG-KMGYVMYRRVHGIDDSPVEGNRI 236
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G +++ R + A + H L +L + +S +DL++ ++ T+ L +
Sbjct: 237 RKSIGRERTY--DRNILYSADIHHELKKLAKMVS----NDLKKRRQHGKTVVL---KLRD 287
Query: 309 SDSDSRKK 316
SD D+ K
Sbjct: 288 SDFDTVTK 295
>gi|417516172|ref|ZP_12179116.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654837|gb|EHC96017.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 343
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 98 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 154
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 155 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 212
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 213 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 262
Query: 290 EQNKRIA 296
E+ I
Sbjct: 263 ERRLAIV 269
>gi|418825347|ref|ZP_13380648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392815769|gb|EJA71702.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
Length = 339
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 94 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 150
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 151 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 208
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 209 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 258
Query: 290 EQNKRIA 296
E+ I
Sbjct: 259 ERRLAIV 265
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 125/306 (40%), Gaps = 66/306 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S+M AK+ CP + V K D Y+ + +I E S+DE
Sbjct: 58 VKSAMSSFLAKQKCPHLIFV-------KTDFERYKEISQRIRAIFYEYTDLVEPLSLDEA 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S +
Sbjct: 111 YLDVT------------------------------ENKKGNLSAS--------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ E SAGI+ NK +AK+AS +NKP Q T+ V L
Sbjct: 126 -------LIAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINPEEVIEFL 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K + GK+ T+ LG+ T DL K ++L + +G +G ++I RGI
Sbjct: 179 AALPVNKFYGV-GKVTTAKMYNLGIFTGNDLKKKPLEELMKLFG-KSGAHYYHIVRGIHN 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS + ++F + + + L Q+ EEL R+ + K I TL
Sbjct: 237 SAVKPNRIRKSIAAERTF--SENISSEIFMIERLEQIAEELERRMKKTDTKGKTI--TLK 292
Query: 301 LHASAF 306
+ S F
Sbjct: 293 IKYSDF 298
>gi|300691327|ref|YP_003752322.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
gi|299078387|emb|CBJ51037.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
Length = 362
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ QH L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQHELTILVDQLAARV 279
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL ++S L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRRWSLVDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|421453095|ref|ZP_15902451.1| DNA polymerase IV [Streptococcus salivarius K12]
gi|400181404|gb|EJO15671.1| DNA polymerase IV [Streptococcus salivarius K12]
Length = 369
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +++ +KS
Sbjct: 119 YLDVT-----------------INKLGIKS------------------------------ 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDCFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|395517555|ref|XP_003762941.1| PREDICTED: DNA polymerase iota-like, partial [Sarcophilus harrisii]
Length = 338
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 27/234 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++D+
Sbjct: 117 MSVRDAKEKCPQLVLVN------GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDI 170
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T E L + D+ A+ H+ +S + ND L
Sbjct: 171 TQTVEKRLHQL---QSDDYSVVAVCGHVYNNQSVNLNDILHV---------------RLL 212
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I E+R + + T AG+A NK+L+KL SG KP QQT + S + L+ SL
Sbjct: 213 IGSQIAAEMREAIFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIGSLD 272
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
IK+M +G K L++ LG+ +V DL FS + L++ G + + ++ G
Sbjct: 273 HIKQMPGIGYKTTKRLES-LGINSVHDLQIFSPEILEKELGISVAQRIQKLSFG 325
>gi|357637556|ref|ZP_09135431.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
gi|357586010|gb|EHJ53213.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
Length = 368
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + + + Y G +V I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFI-------RGNHTKYYEVGMQVRKIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LGL S
Sbjct: 119 YLDVT------------------------ANKLGLTS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V I ++ + KE TCSAG+++NK LAKLAS KP T + K L
Sbjct: 132 -----AVKIAKLIQYDIWKELHLTCSAGVSYNKFLAKLASDYEKPHGLTVILPEEAKTFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
SLPI+K +G + L + +GV T DL + E L + +G G L+ ARGIS
Sbjct: 187 SSLPIEKFHGVGKRSVEKLHH-MGVFTGKDLQEIPEMTLIDLFG-RFGFDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V++ + KS G+ +++
Sbjct: 245 SPVKSHRIRKSIGNERTY 262
>gi|336476258|ref|YP_004615399.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929639|gb|AEH60180.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 361
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 148/347 (42%), Gaps = 78/347 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYL 62
S+M +A +CP V +PV + + Y+ + ++ IL R R E+ S+DE YL
Sbjct: 63 SAMPISKAYRLCPH--AVYLPV-----NSALYKKTSNRIMVILQRFAERFEQVSVDEAYL 115
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+ K T D DH
Sbjct: 116 DM-------------------------------------GKKVT--------DYDH---- 126
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
AC +I +++ ++ + TCS GIA K +AK+AS NKP T VP + VK L
Sbjct: 127 -AC--MIAEQIKKEIFRAEGLTCSIGIAPGKKVAKIASDYNKPDGLTVVPPAKVKEFLAP 183
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
+P+ K+ +G K L+ E+ + VG L ++ L +G +G ++ IA G+ E
Sbjct: 184 MPVSKIPGIGKKTEQMLR-EMNIYRVGQLAEYDVQALISRFG-KSGIFMKQIANGVDHGE 241
Query: 243 VQARLLPKSHGSGKSFPGPRA-LKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
++ KS +F A + V SV L LCEE+ + + + + I TL +
Sbjct: 242 IKQYRESKSISKEDTFEEDTADYRIVESV---LMSLCEEVHRAMKINNFRFRTI--TLKV 296
Query: 302 HASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 348
S F++ S K P++ + I++ + NL ++EF+G
Sbjct: 297 RFSDFRTYTRSSTLKCPAEEMDI------IKQHSKNL----IKEFIG 333
>gi|195453784|ref|XP_002073941.1| GK14382 [Drosophila willistoni]
gi|194170026|gb|EDW84927.1| GK14382 [Drosophila willistoni]
Length = 735
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 142/335 (42%), Gaps = 35/335 (10%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLDL 64
M +A+ CP + LV DL+ YR ++ +L E+ DE ++D+
Sbjct: 66 MLISDAQRRCPDLVLV------NGEDLAPYRLMSQKIFDLLLNYTPAVEKLGFDENFMDV 119
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
+ L E E E E+ H+ D + + LC C + LA
Sbjct: 120 S-----ALVELRQEHAAEAQEKPPVGHLYP-------DDGTLLTDCLCGCA-----QRLA 162
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R ++ TC AGIA+NK+LAKL +KP QQT + S + + L
Sbjct: 163 IGSRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSRHKPNQQTVLVSSHAEEFMRELN 222
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
++++ +G K SL E G+ +V L + D +++ +GF T T L ++A G V
Sbjct: 223 DLQRVTGIGQK-TLSLLQEAGINSVEQLQQCDMDMMRKKFGFETATKLRDLAYGRDVSAV 281
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
+ PKS G + + + + V+ L L E++ D I L
Sbjct: 282 RPTGKPKSIGMEDAC---KPISISSDVEDKFRMLLMRLVEQVAEDGRIPIAIKVVLRKFD 338
Query: 304 SAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 332
+ KSS ++++ F + C GT ++Q
Sbjct: 339 AQKKSSHRETKQANILPSLFKTSMCSGETGTGRVQ 373
>gi|56414559|ref|YP_151634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363489|ref|YP_002143126.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599398|sp|Q5PF76.1|DPO4_SALPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|56128816|gb|AAV78322.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094966|emb|CAR60503.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|340399531|ref|YP_004728556.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
gi|338743524|emb|CCB94034.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
Length = 368
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T + LG++S
Sbjct: 119 YLDVT------------------------INKLGVKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 113/281 (40%), Gaps = 65/281 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S+M A +CP + V K YR +V +I A E S+DE
Sbjct: 59 VRSAMPSMRAMRLCPDLIFV-------KPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEA 111
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLDLTD H+ N S AT
Sbjct: 112 YLDLTD------------------------HL--------NGSTAT-------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I E+R ++ + T T SAG+++NK LAKLAS KP +P + +
Sbjct: 126 -------RIAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGAEFV 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI + +G ++ G+ T DL + S D L +G +G + WNI+RGI
Sbjct: 179 QGLPIGRFHGIGPATAARMEAH-GILTGADLARQSLDFLTARFG-KSGAYYWNISRGIDT 236
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
EV+ + KS G+ ++ L+ +A+ L L +++
Sbjct: 237 REVKPDRIRKSIGAENTY--FEDLRDIAAAHEALAVLADKV 275
>gi|116628345|ref|YP_820964.1| DNA polymerase IV [Streptococcus thermophilus LMD-9]
gi|122267060|sp|Q03J54.1|DPO4_STRTD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116101622|gb|ABJ66768.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus thermophilus LMD-9]
Length = 367
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 KKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|110799334|ref|YP_696252.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
gi|123344702|sp|Q0TQ38.1|DPO4_CLOP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110673981|gb|ABG82968.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
Length = 359
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K
Sbjct: 115 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 174
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ + GK+ + +G+ T D+ K L + +G G LW ++GI +V +
Sbjct: 175 IPGV-GKVSAAKLEAMGLRTCSDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSER 232
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
L KS G ++ + HW CE + ERL +LE+
Sbjct: 233 LRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|422346234|ref|ZP_16427148.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
gi|373226856|gb|EHP49178.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
Length = 359
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|416568092|ref|ZP_11764531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363578194|gb|EHL62010.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|198245459|ref|YP_002214268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200390906|ref|ZP_03217517.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207855798|ref|YP_002242449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117745|ref|ZP_09762912.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|418845907|ref|ZP_13400684.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418860672|ref|ZP_13415247.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864156|ref|ZP_13418691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|421357900|ref|ZP_15808208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365109|ref|ZP_15815331.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369118|ref|ZP_15819302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372564|ref|ZP_15822713.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376176|ref|ZP_15826285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380746|ref|ZP_15830808.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384111|ref|ZP_15834140.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392611|ref|ZP_15842568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395871|ref|ZP_15845803.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398530|ref|ZP_15848435.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405287|ref|ZP_15855122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407887|ref|ZP_15857694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414038|ref|ZP_15863784.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419576|ref|ZP_15869268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423747|ref|ZP_15873398.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425500|ref|ZP_15875135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429849|ref|ZP_15879443.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437785|ref|ZP_15887299.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440875|ref|ZP_15890350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445723|ref|ZP_15895144.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451323|ref|ZP_15900689.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436635994|ref|ZP_20515843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793964|ref|ZP_20521938.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810464|ref|ZP_20529502.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813788|ref|ZP_20531976.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831512|ref|ZP_20536180.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849648|ref|ZP_20540785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856061|ref|ZP_20545166.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863047|ref|ZP_20549590.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871522|ref|ZP_20554696.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878673|ref|ZP_20559092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886788|ref|ZP_20563194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894544|ref|ZP_20568022.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904671|ref|ZP_20574688.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909852|ref|ZP_20576437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918105|ref|ZP_20581276.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925673|ref|ZP_20586105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934146|ref|ZP_20590150.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941426|ref|ZP_20594986.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949416|ref|ZP_20599430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959531|ref|ZP_20603728.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975250|ref|ZP_20611526.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987057|ref|ZP_20615701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999594|ref|ZP_20620167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009914|ref|ZP_20623894.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018290|ref|ZP_20626782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035425|ref|ZP_20633351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046726|ref|ZP_20638542.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049477|ref|ZP_20640097.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056709|ref|ZP_20644077.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065161|ref|ZP_20648846.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079059|ref|ZP_20656553.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082082|ref|ZP_20658157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090106|ref|ZP_20662678.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115035|ref|ZP_20669257.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122676|ref|ZP_20672518.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132779|ref|ZP_20678229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137886|ref|ZP_20680681.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149199|ref|ZP_20688072.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151842|ref|ZP_20689513.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160794|ref|ZP_20694867.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169509|ref|ZP_20699829.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176703|ref|ZP_20703507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437188110|ref|ZP_20710114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437198466|ref|ZP_20711392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259572|ref|ZP_20717092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272583|ref|ZP_20724333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276752|ref|ZP_20726566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288221|ref|ZP_20730555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309658|ref|ZP_20735586.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437329016|ref|ZP_20741106.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338654|ref|ZP_20743859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437381049|ref|ZP_20750293.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437413030|ref|ZP_20753452.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456141|ref|ZP_20760260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470138|ref|ZP_20765153.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485143|ref|ZP_20769255.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499181|ref|ZP_20773990.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437513661|ref|ZP_20777639.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437531189|ref|ZP_20780669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554615|ref|ZP_20784387.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571560|ref|ZP_20788669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586130|ref|ZP_20793217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602499|ref|ZP_20798506.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625841|ref|ZP_20805694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643106|ref|ZP_20808368.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664518|ref|ZP_20814321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675779|ref|ZP_20816847.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437687951|ref|ZP_20819620.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710216|ref|ZP_20826321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437726256|ref|ZP_20830061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437754980|ref|ZP_20834157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802361|ref|ZP_20838326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437907945|ref|ZP_20850084.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438076074|ref|ZP_20857333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090824|ref|ZP_20860653.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105066|ref|ZP_20866132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114592|ref|ZP_20870208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445144062|ref|ZP_21386811.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445153608|ref|ZP_21391455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445163964|ref|ZP_21393996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445218195|ref|ZP_21402532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445219434|ref|ZP_21402735.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445298291|ref|ZP_21411325.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329323|ref|ZP_21413381.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343659|ref|ZP_21417128.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362434|ref|ZP_21424194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939975|gb|ACH77308.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603351|gb|EDZ01897.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|206707601|emb|CAR31883.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|326622012|gb|EGE28357.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|392811909|gb|EJA67907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392826056|gb|EJA81789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392831417|gb|EJA87050.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|395980620|gb|EJH89843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983413|gb|EJH92606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990137|gb|EJH99269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000214|gb|EJI09229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003403|gb|EJI12391.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003795|gb|EJI12782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008172|gb|EJI17107.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010915|gb|EJI19826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020673|gb|EJI29514.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024598|gb|EJI33384.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029819|gb|EJI38555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030320|gb|EJI39054.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035716|gb|EJI44388.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035795|gb|EJI44466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037132|gb|EJI45783.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048747|gb|EJI57291.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396056771|gb|EJI65244.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057166|gb|EJI65638.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396064078|gb|EJI72466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064158|gb|EJI72545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065814|gb|EJI74182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|434958517|gb|ELL52066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962967|gb|ELL56109.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964956|gb|ELL57919.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975296|gb|ELL67606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982469|gb|ELL74292.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434988225|gb|ELL79824.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991494|gb|ELL82982.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997574|gb|ELL88813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000737|gb|ELL91859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007349|gb|ELL98202.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011320|gb|ELM02040.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017193|gb|ELM07701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018358|gb|ELM08833.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028225|gb|ELM18304.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030837|gb|ELM20826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040066|gb|ELM29835.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041286|gb|ELM31028.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045257|gb|ELM34902.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050201|gb|ELM39706.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054114|gb|ELM43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054196|gb|ELM43631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059638|gb|ELM48913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060135|gb|ELM49405.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066814|gb|ELM55885.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074792|gb|ELM63615.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078196|gb|ELM66940.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081882|gb|ELM70523.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096227|gb|ELM84499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097015|gb|ELM85277.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099809|gb|ELM88000.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101415|gb|ELM89569.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111250|gb|ELM99155.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115124|gb|ELN02914.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115281|gb|ELN03052.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122326|gb|ELN09848.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123502|gb|ELN10995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131008|gb|ELN18236.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134520|gb|ELN21648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143315|gb|ELN30181.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146307|gb|ELN33100.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148368|gb|ELN35095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155428|gb|ELN41972.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435156030|gb|ELN42532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435164960|gb|ELN51020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167915|gb|ELN53768.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173593|gb|ELN59090.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183621|gb|ELN68582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185148|gb|ELN70036.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190547|gb|ELN75129.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196045|gb|ELN80401.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203065|gb|ELN86851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435203148|gb|ELN86932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206848|gb|ELN90340.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435215023|gb|ELN97771.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216318|gb|ELN98793.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222316|gb|ELO04432.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435224104|gb|ELO06088.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435230298|gb|ELO11632.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243491|gb|ELO23748.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243913|gb|ELO24167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435248013|gb|ELO27934.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252608|gb|ELO32136.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260187|gb|ELO39400.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260401|gb|ELO39600.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265646|gb|ELO44451.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435275141|gb|ELO53228.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277393|gb|ELO55346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282999|gb|ELO60595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435288989|gb|ELO65979.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435292206|gb|ELO68995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435303719|gb|ELO79558.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310147|gb|ELO84686.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435310911|gb|ELO85232.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435316161|gb|ELO89352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435318755|gb|ELO91664.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435321675|gb|ELO94066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435328991|gb|ELP00449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444847202|gb|ELX72352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852267|gb|ELX77348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444856698|gb|ELX81724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867633|gb|ELX92311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444870975|gb|ELX95430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444879083|gb|ELY03191.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881463|gb|ELY05507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882093|gb|ELY06085.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884113|gb|ELY07957.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|157114087|ref|XP_001657975.1| DNA polymerase iota [Aedes aegypti]
gi|108877445|gb|EAT41670.1| AAEL006715-PA [Aedes aegypti]
Length = 654
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 24/314 (7%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +EA ++CP + LV DL+ Y+ +++ I+ + E+ +DE YLD+
Sbjct: 66 MLINEATKLCPDLVLV------NGEDLTKYKQMSAKIHEIMHKFTPNVEKLGLDENYLDV 119
Query: 65 TDAAEAMLAETPPESLDEVDEEALKS--HILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
T L + +++ E L++ + +D N S V C C D R
Sbjct: 120 TREINDQLEQ-------KLNLEQLQNVEGFIYPPKEDSNLSDQEVFRRACSCGCDRR--- 169
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L + ++R ++ E C AGIAHNK+LAKL G++K +QT + + + S
Sbjct: 170 LILASHMAKQIRDRIFCELGMKCCAGIAHNKLLAKLVGGVHKQDKQTVLLPNCAASFVRS 229
Query: 183 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L +K + +G K L+ E GV TV +L + +L + G+ + L ++ G
Sbjct: 230 LGTVKSLTGIGDKTAQILE-ECGVRTVQELQEAPLHQLSKRLGYEQSSKLKEMSFGKDDT 288
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ PKS G S P A+ A + L L + + D I T+
Sbjct: 289 PVKQTGKPKSVGLEDSCP---AISIRADAEDKFRHLLVRLVKNIADDGRIPIAIKVTVRK 345
Query: 302 HASAFKSSDSDSRK 315
H S K+S + ++
Sbjct: 346 HDSVKKTSHRECKQ 359
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 4/171 (2%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D H K I E+R + E + T SAGIA K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
V + +LP+ K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLPLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASALLNNLYDELIRRL 277
>gi|386087258|ref|YP_006003132.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|386345357|ref|YP_006041521.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387910359|ref|YP_006340665.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
gi|312278971|gb|ADQ63628.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|339278818|emb|CCC20566.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387575294|gb|AFJ84000.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
Length = 367
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 KKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|325093158|gb|EGC46468.1| DNA damage repair protein Mus42 [Ajellomyces capsulatus H88]
Length = 1162
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A + IL+ + SIDE +D+
Sbjct: 419 MKG--ALQMCPNLKVLPY-------DFAAYEEASRKFYDVILSIDAVVQSVSIDEALVDI 469
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L +G +D ++ W + AD
Sbjct: 470 TN---------------------LCQDAVGSRGRDISEDSI----WREQEKADE------ 498
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR V ++T S GI N + A++A KPA Q + +V + +L
Sbjct: 499 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLA 554
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+K + + LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 555 VKDLPGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVG 613
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 614 FHPPRKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|168465387|ref|ZP_02699269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|418763352|ref|ZP_13319476.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418766861|ref|ZP_13322933.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772033|ref|ZP_13328039.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774716|ref|ZP_13330677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781329|ref|ZP_13337214.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784793|ref|ZP_13340630.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418804608|ref|ZP_13360212.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419789054|ref|ZP_14314737.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794108|ref|ZP_14319724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631947|gb|EDX50467.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|392616198|gb|EIW98633.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392616520|gb|EIW98953.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392733608|gb|EIZ90810.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392734596|gb|EIZ91778.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736872|gb|EIZ94034.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392748056|gb|EJA05047.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392749916|gb|EJA06892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392754324|gb|EJA11243.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392769637|gb|EJA26366.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|55821632|ref|YP_140074.1| DNA polymerase IV [Streptococcus thermophilus LMG 18311]
gi|81560203|sp|Q5M2Y5.1|DPO4_STRT2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55737617|gb|AAV61259.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus LMG
18311]
Length = 367
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 KKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|168819096|ref|ZP_02831096.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248740|ref|YP_006884580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205343975|gb|EDZ30739.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084568|emb|CBY94360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|194442660|ref|YP_002039555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|238913297|ref|ZP_04657134.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|418807468|ref|ZP_13363026.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418812007|ref|ZP_13367531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815365|ref|ZP_13370866.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821453|ref|ZP_13376878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418831645|ref|ZP_13386595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835646|ref|ZP_13390537.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418838629|ref|ZP_13393471.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418848833|ref|ZP_13403568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854945|ref|ZP_13409608.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|194401323|gb|ACF61545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392776747|gb|EJA33433.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392778731|gb|EJA35402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392791048|gb|EJA47541.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392791817|gb|EJA48285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392798542|gb|EJA54813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392802921|gb|EJA59122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392814455|gb|EJA70406.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392822180|gb|EJA77992.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823119|gb|EJA78922.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 351
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|427400155|ref|ZP_18891393.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
gi|425720895|gb|EKU83810.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
Length = 341
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 62/241 (25%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGR-CERASIDEVYL 62
S+M A ++CP +L+ +P A + YR A ++++I E S+DE YL
Sbjct: 38 SAMATATAIKLCP--DLLVIPPA-----MEKYRIASRQIMAIYQDYTEIVEPLSLDEAYL 90
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD+ C+ A
Sbjct: 91 DVTDSPH------------------------------------------CKGSA------ 102
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LI E+R ++ + T SAG+A NK +AK+AS NKP V V + +
Sbjct: 103 ----TLIAQEIRRRIFETVGITASAGVAPNKFVAKIASDWNKPDGLFLVRPDEVDAFVAA 158
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+KK+ + GK+ N LG+ T DL +S D+LQE +G + G L++++RGI E
Sbjct: 159 LPVKKLHGV-GKVTAEKMNRLGLQTCADLRAWSMDQLQEHFG-SFGARLYDLSRGIDHRE 216
Query: 243 V 243
V
Sbjct: 217 V 217
>gi|168213536|ref|ZP_02639161.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|168217689|ref|ZP_02643314.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
gi|170714869|gb|EDT27051.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|182380253|gb|EDT77732.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
Length = 359
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E++ ++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K
Sbjct: 124 LIALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +G+ DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGIFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L+++ +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILDRIAGRISESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|154281677|ref|XP_001541651.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
gi|150411830|gb|EDN07218.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
Length = 1162
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 50/292 (17%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A + IL+ + SIDE +D+
Sbjct: 419 MKG--ALQMCPNLKVLPY-------DFAAYEEASEKFYDVILSIDAVVQSVSIDEALVDI 469
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLL 123
T+ + + + G D S+ ++ W + AD
Sbjct: 470 TNLCQDAVGSS------------------------GRDISEGSI--WREQEKADE----- 498
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
I +LR V ++T S GI N + A++A KPA Q + +V + +L
Sbjct: 499 -----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTL 553
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
+K + + LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 554 TVKDLPGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEV 612
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 613 GFHPPRKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|225563209|gb|EEH11488.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1162
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D ++Y A + IL+ + SIDE +D+
Sbjct: 419 MKG--ALQMCPNLKVLPY-------DFAAYEEASRKFYDVILSIDAVVQSVSIDEALVDI 469
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L +G +D ++ W + AD
Sbjct: 470 TN---------------------LCQDAVGSRGRDISEDSI----WREQEKADE------ 498
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR V ++T S GI N + A++A KPA Q + +V + +L
Sbjct: 499 ----IAQKLRDSVKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLT 554
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+K + + LG L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV
Sbjct: 555 VKDLPGVAHSLGAKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVG 613
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
KS + S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 614 FHPPRKSVSAEISW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|383188934|ref|YP_005199062.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587192|gb|AEX50922.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 364
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 138/361 (38%), Gaps = 78/361 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP ++++ + +Y+ A + + I AR E S+DE
Sbjct: 53 VHSAMPTGMALKLCPHLKVI-------PGRMEAYKEASNHIREIFARYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD++D+ + C+
Sbjct: 106 YLDVSDSPQ--------------------------------------------CNGS--- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L
Sbjct: 119 -----ATLIAAEIRQAIFDEIALTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ K+ +G LQ E G+ T GD+ ++ KL + +G G LW +GI
Sbjct: 174 QDLPLSKIPGVGKVTAQRLQ-EQGLFTCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTL 299
E+ + L KS G ++ + W + C L ERL +L R++ L
Sbjct: 232 REISSERLRKSVGVERTL--------AEDIHGW--EECVALIERLYPELHTRLSRVSPDL 281
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 359
+ K D ++ P+ +ED + + + G GV+ G H
Sbjct: 282 RIARQGVKLKFHDFQQTTQEHVWPVLN-----KEDLLKVAREAWEKRRGGRGVRLVGLHV 336
Query: 360 S 360
+
Sbjct: 337 T 337
>gi|417339507|ref|ZP_12121054.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960280|gb|EHJ84177.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 356
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G LI LR ++ +ET T SAG+ K +AK+AS ++KP T V + LP
Sbjct: 135 SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLP 194
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
I+K +G +Q ELG+ T DL + E L +G G +A G VQ
Sbjct: 195 IEKFHGIGPVTAAKMQ-ELGIQTGADLQETPERTLIHHFG-KRGRHFKTLAVGTDDRPVQ 252
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 304
KS G+ ++FP + +A + L++L ++ER+ L Q R T+TL
Sbjct: 253 PDRDRKSVGAERTFP-----EDIARAETMLDRLS-PIAERVAQRLRQANRKGRTVTLK-- 304
Query: 305 AFKSSDSDSRKKFPSKSCPLR 325
KS D + + PLR
Sbjct: 305 -LKSHDHQVSTRQTTVDRPLR 324
>gi|238759709|ref|ZP_04620868.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
gi|238702035|gb|EEP94593.1| DNA polymerase IV [Yersinia aldovae ATCC 35236]
Length = 352
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 117/294 (39%), Gaps = 72/294 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V S+M A ++CPQ++++ +++Y+ A + I AR E S+DE
Sbjct: 53 VRSAMPTAMALKLCPQLKVI-------PGRMAAYKEASLHIREIFARYTPLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD++D LC A
Sbjct: 106 YLDVSDCT------------------------------------------LCSGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E T SAGIA K LAK+AS +NKP Q + + L
Sbjct: 120 ------TLIAREIRQTIYDELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQILPFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ K+ +G LQ ELG+ T GD+ +S+ +L + +G G LW + GI
Sbjct: 174 YELPLSKIPGVGKVTAKRLQ-ELGLATCGDVQNYSQAELLKRFG-KFGRVLWERSHGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
+ L KS G ++ + W + CE L E+L +LE R
Sbjct: 232 RGISPDRLRKSVGVEQTL--------AEDIHDW--ESCESLIEQLYVELETRLR 275
>gi|348544851|ref|XP_003459894.1| PREDICTED: DNA polymerase kappa-like [Oreochromis niloticus]
Length = 875
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 145/324 (44%), Gaps = 44/324 (13%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILA-RKGRCERASIDEV 60
V ++M G AK++CP LV VP+ + YR +E+ I A + S+DE
Sbjct: 146 VRAAMPGFIAKKLCPS--LVIVPL-----NFDKYRAVSNEIREIFADYDPNFQPLSLDEA 198
Query: 61 YLDLTDAAEA--------------MLAETPPESLDEVDEEALK-----SHILGLESKDGN 101
YLD TD E + T E E+ +EA+ S +L E G+
Sbjct: 199 YLDFTDHLEQRQHWPESARTHHFRVRDMTTDEKKAELSQEAMTEIRELSPVL-FEDSPGS 257
Query: 102 DSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASG 161
S + V R A + V E+R ++ ++T T SAGIA N MLAK+ S
Sbjct: 258 -SPSPVGPEGVRAPAGDFEVFGTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSD 316
Query: 162 MNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 219
NKP Q +P + +V + +LP++K+ + GK+ + N LG++T L +
Sbjct: 317 KNKPNGQYRLPSTREAVMDFIHNLPVRKVCGI-GKVSEKMLNALGISTCSHL---GQQMA 372
Query: 220 QESYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQL 277
S F+ W ++ G+ + +P+ H KS R K ++ V+ L+ L
Sbjct: 373 LLSLLFSETAWHHFLEVSLGLG-----STYIPR-HEERKSMSTERTFKELSKVEEQLS-L 425
Query: 278 CEELSERLCSDLEQNKRIAHTLTL 301
C EL E L D+++ T+TL
Sbjct: 426 CRELCEDLAEDMKKEGLKGKTVTL 449
>gi|62178884|ref|YP_215301.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224582154|ref|YP_002635952.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113190|ref|ZP_09758360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75484717|sp|Q57SU1.1|DPO4_SALCH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|62126517|gb|AAX64220.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224466681|gb|ACN44511.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713336|gb|EFZ04907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 351
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|417793255|ref|ZP_12440535.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
gi|334273503|gb|EGL91847.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
Length = 345
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 123/318 (38%), Gaps = 68/318 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + Y+ G E+ +I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFIS-------GNYEKYKTVGLEIRAIFKRYTDLIEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V I ++ + +E T SAG+++NK LAK+AS KP T + + L
Sbjct: 132 -----AVKIARLIQQDIWQELHLTASAGVSYNKFLAKMASDYQKPHGLTVILPDQAEDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ I K +G K L +ELG+ T DLL SE L + +G G L+ ARGI
Sbjct: 187 KQMDIAKFHGVGKKSVEKL-HELGIYTGADLLDVSEVTLIDRFG-RLGFDLYRKARGIHN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+A + KS G K++ + V+ + + LSE++ +L Q + +
Sbjct: 245 SPVKANRIRKSIGKEKTYG------KILHVEEDIKKELTLLSEKVAHNLSQQGKAGKIII 298
Query: 301 LHASAFKSSDSDSRKKFP 318
L S RK P
Sbjct: 299 LKIRYADFSTLTRRKSLP 316
>gi|417363626|ref|ZP_12136788.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417404428|ref|ZP_12157699.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353599778|gb|EHC55865.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353628510|gb|EHC76549.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 356
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 128/310 (41%), Gaps = 49/310 (15%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V S+M G K++CP +LV PV + Y E+ I A A S+DE
Sbjct: 189 VRSAMPGFIGKKLCP--DLVFTPVR-----MEKYSAIAQEIRQIFAVYDPNFTAFSLDEA 241
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR- 119
LDLTD E + ++ L KD N W+ C+
Sbjct: 242 ALDLTDYTR----------------EHWRKYVSQLSLKDWNHDG-----WMQDCETRQEG 280
Query: 120 ------DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
+ IV+E+R ++ +ET+ T SAGIA N MLAK+ S + KP Q +
Sbjct: 281 GHEMPESLTMKIASAIVSEIRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEG 340
Query: 174 SS--VKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
S + + LP++K+ + GK+ + L +TT+ ++ L + T TWL
Sbjct: 341 SKEVILEFIRELPVRKVGGI-GKVMEKILAALNITTMQEVFD-RRAVLFHVFKERTATWL 398
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
GI ++ S KS+ K V+ + L Q+C + E L DL +
Sbjct: 399 LRTCLGIQEQQ--------SESERKSYSRETTFKAVSDFES-LKQICASICEHLAQDLAE 449
Query: 292 NKRIAHTLTL 301
+ A +TL
Sbjct: 450 DNVAARNITL 459
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDKGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M +A ++CP V ++ +YR ++++SI + + E S+DE
Sbjct: 55 VYSAMPMSQAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YL D E + + P
Sbjct: 108 YL---DITELVRPDLPASK----------------------------------------- 123
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L
Sbjct: 124 --------IAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDIL 175
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+L I + + GK + ++ G+ DL + +E +L +G G L+N ARGI
Sbjct: 176 MTLDIGEFPGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDH 233
Query: 241 EEVQARLLPKSHGSGKSF 258
EV++ + KS G+ ++F
Sbjct: 234 SEVKSSRVRKSVGTERTF 251
>gi|255932959|ref|XP_002557950.1| Pc12g11320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582569|emb|CAP80759.1| Pc12g11320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1163
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 189/444 (42%), Gaps = 90/444 (20%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A ++CP ++++ D +Y +A + S ILA G + SIDE +D+
Sbjct: 430 MKG--ALQLCPDLKVLPY-------DFPAYEDASRKFYSSILAIDGTVQSVSIDEALIDI 480
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ L LE+ G+D KA + + R A +
Sbjct: 481 TN--------------------------LCLEA-GGSDGKAISEGSIYREQAKADE---- 509
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I +LR + K+T S GI +N +LAK++ KPA Q + +V + L
Sbjct: 510 ----IAQDLRDSIKKKTGCAVSVGIGNNILLAKVSLRRAKPAGQFQLKPDAVLDFIGDLT 565
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+ + +G + L+ EL V V D+ S+++L G TG LW ARGI EV
Sbjct: 566 VCDLPGVGNSMAIKLE-ELNVKFVKDIRDLSKERLISHLGPKTGIKLWEYARGIDRTEVG 624
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
+ + KS + ++ ++ V Q ++ LCEEL+ RL +L + K+ LTL
Sbjct: 625 DQTMRKSVSAEVNW----GIRFVNQDQADDFVRSLCEELNRRLTENLVKGKQ----LTLK 676
Query: 303 ASAFKSSDSDSRKKFPSKSCPLRY-GTAKIQEDTFNLFQA-----GLREFLGSFGVKTQG 356
R+ + P+++ G K DTFN A + E +G +
Sbjct: 677 V---------MRRSMDAPLEPVKHLGHGKC--DTFNKSVALGVATNVAETIGKEAISMLK 725
Query: 357 S-HYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSG 415
S ++S + L V +K+ P+ G +GP+ S+ QL NF SPS
Sbjct: 726 SFNFSPGDLRGLGVQMTKLEPIKPG-------LSGPE---SSQRQL--NFQK----SPSH 769
Query: 416 SESYSTLNSTELQNELPGEQVWIE 439
+ + EL++ G+ V I+
Sbjct: 770 KKIIPDADPDELESPQKGDSVRIQ 793
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R + + T T SAG+++NK LAK+ASG +KP T +P + + +LPI K
Sbjct: 125 IAQAIRAAIRETTGLTASAGVSYNKFLAKIASGYHKPDGLTVIPPDRARDFIAALPIGKF 184
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +Q G+ T DLL+FS ++ +G TG + +IARG+ VQ +
Sbjct: 185 YGVGPATERKMQAH-GIRTGADLLRFSRQEMVALFG-KTGHFFHDIARGLDQRPVQPVRV 242
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ + + A V L QL +++S RL ++ R TLTL
Sbjct: 243 RKSIGAETTL--AEDILDYARVSVVLYQLVQQVS-RLLAEKATGGR---TLTL 289
>gi|119469761|ref|XP_001257973.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
gi|119406125|gb|EAW16076.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
Length = 1154
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP+++++ D +Y A + S +LA G + SIDE +D+
Sbjct: 430 MKG--ALQACPELKVLPY-------DFPAYEEASKKFYSAVLAVDGVVQSVSIDEALVDI 480
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T + LE+ G+D + + + R A +
Sbjct: 481 T--------------------------MQCLEA-GGSDGRGISEGSIYREQAKADE---- 509
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I LR V T S GI N +LAK+A KPA Q + SV L+ L
Sbjct: 510 ----IAQNLRESVKAATGCDVSVGIGGNILLAKVALRKAKPAGQFQLKPDSVLDLIGDLT 565
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LG L+ ELGV V D+ S +KL G TG +W ARGI EV
Sbjct: 566 VQDLPGVGYSLGAKLE-ELGVKFVKDVRDVSREKLINHLGPKTGLKIWEYARGIDRTEVG 624
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LCEEL RL +L + K++
Sbjct: 625 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPEAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 120 DKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
DKL + + I +++ + E T SAG++ NK +AK+AS +NKP + S ++
Sbjct: 121 DKLNIGSAIEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGPSGIEN 180
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
++ LP++K + GK+ ++G+ T DL K +ED++ +G G + + I RG+
Sbjct: 181 FMELLPVEKFFGV-GKVTAEKMKKMGLHTGADLKKLTEDEMHRHFG-KAGRFYYQIVRGL 238
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 298
EVQ KS G+ +F L T+A + L+++ ++ R LE+ + T
Sbjct: 239 DNREVQPHRETKSMGAEDTF--AYDLTTLAEMNAELDKIAVTVANR----LERYQLKGRT 292
Query: 299 LTLHASAFKSSDSDSRKKFPSKSCP---LRYGTAKIQEDTFNLFQAG 342
+TL K SD + S + P L TA ++ F F+ G
Sbjct: 293 VTLKV---KYSDFKQITRNQSSAAPIADLESITATAKQLLFTSFEEG 336
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E++ V + T +CS GIA NK+LAK+AS ++KP T + S + + LP+ K+
Sbjct: 131 LANEIKAAVREATGLSCSIGIAPNKLLAKIASDLDKPDGLTVLAPSDLAARVWLLPVNKI 190
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K G LQ LG+ T+GDL + L+ +G G WL A G+ + +
Sbjct: 191 NGIGPKAGDRLQG-LGIRTIGDLAGAAPALLERHFGARMGGWLIRAAHGLDEQPIVTESE 249
Query: 249 PKSHGSGKSFPG------PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
P+S +F RAL T A L LCE ++ L + + + I L H
Sbjct: 250 PRSMTRETTFERDLHPRQDRALLTAA-----LTGLCERVAGDLAARGYRGRTIGIKLRYH 304
>gi|145523365|ref|XP_001447521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415032|emb|CAK80124.1| unnamed protein product [Paramecium tetraurelia]
Length = 521
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 137/323 (42%), Gaps = 57/323 (17%)
Query: 6 MRGDEAKEVCPQIELVQVPVAR----------------------GKADLSSYRNAGSEVV 43
M +EA ++CP + L V + K L YR +
Sbjct: 57 MLSEEAIKLCPNVMLPHVETFKVIDGKMVFSTLKDKYIQHNQYEEKVSLRYYRQESKLIF 116
Query: 44 SILARKGRC-ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND 102
+ + R C E+ DE Y+ +++ + L++++ + H++
Sbjct: 117 TTIKRFCNCVEKGGTDEGYIQVSE-----------KELEDIEAQQFYGHLM--------- 156
Query: 103 SKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
KE +D LL L+ +R + ET++ CSAGI+ NKMLAKLAS
Sbjct: 157 -----KELPEDYQLTEQDHLLRRASLLCQNIRDAIYTETKYKCSAGISFNKMLAKLASAT 211
Query: 163 NKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES 222
NKP +QT + + + ++ I K++ GGK+ +L E G+ TVG S +LQ
Sbjct: 212 NKPNKQTIILECMLPECISNIGINKIRGFGGKVQEALL-ESGLKTVGQAQTLSIYELQSL 270
Query: 223 YGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVAS---VQHWLNQLCE 279
+G + ++++ RG E V+ + K+ KS + +K +S + L +
Sbjct: 271 FG-DKAQYIYDKLRGYDDEIVKKEVDLKN----KSILSLKNIKKTSSREVIIQSLELILH 325
Query: 280 ELSERLCSDLEQNKRIAHTLTLH 302
+++ R+ E + + L +H
Sbjct: 326 DITMRVTDYYEDSNLVPSVLVIH 348
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
A I +R Q+ +ET T SAGIA NK LAK+AS KP Q + V+ L L
Sbjct: 116 AAATEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHRVEAFLTPL 175
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
P+ K+ +G + + L LG+ TVGDL SE +L+ +G + G L+ ARGI V
Sbjct: 176 PVNKVPGVGKVMQSKL-AALGIVTVGDLRDCSEAELEARFG-SFGLRLYQRARGIDERPV 233
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
++ +S S +F AL+ L L+E+ + R+A T+ L
Sbjct: 234 ESDQPVQSISSEDTFAEDLALEA-------LEPAIRRLAEKTWDATRRTDRVARTVVL 284
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK
Sbjct: 131 IAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPAFVERLPVKKF 190
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +Q LG+ T DL + + D L E +G +G + + IARGI +V+ +
Sbjct: 191 HGVGPATAEKMQR-LGIETGADLKERTLDFLVEHFG-KSGPYFYGIARGIDNRQVKPDRV 248
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 249 RKSIGAEDTF 258
>gi|383809839|ref|ZP_09965352.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
gi|383447374|gb|EID50358.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
Length = 445
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 127 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 186
V I +R ++ E CSAGI+ NK LAK+AS +KP VP V+ LD +P+
Sbjct: 144 VAIAQRVRERIADELSLPCSAGISINKFLAKMASTGSKPNGLWVVPPHRVQEFLDPMPVN 203
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 246
K+ +G + T L NE G+ TV L +F L +G G+ L+ +ARGI V
Sbjct: 204 KLWGVGARSAT-LLNEYGIYTVAQLREFDTQWLCGRFGNAAGSHLYALARGIDHRPVVTE 262
Query: 247 LLPKSHGSGKSF 258
+ KS G+ +F
Sbjct: 263 RVEKSMGAEHTF 274
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M +A ++CP V ++ +YR ++++SI + + E S+DE
Sbjct: 45 VYSAMPMSQAHKLCPNGYFVT-------SNFGAYRETSAQIMSIFRSYTDKVEPMSLDEA 97
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YL D E + + P
Sbjct: 98 YL---DITELVRPDLPASK----------------------------------------- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L
Sbjct: 114 --------IAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDIL 165
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+L I + + GK + ++ G+ DL + +E +L +G G L+N ARGI
Sbjct: 166 MTLDIGEFPGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDH 223
Query: 241 EEVQARLLPKSHGSGKSF 258
EV++ + KS G+ ++F
Sbjct: 224 SEVKSSRVRKSVGTERTF 241
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|156340492|ref|XP_001620463.1| hypothetical protein NEMVEDRAFT_v1g148076 [Nematostella vectensis]
gi|156205419|gb|EDO28363.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ E SAGI+ NK +AK+AS +NKP Q T+ V L+ LPI K
Sbjct: 47 LIAQEIRQRIWDELTLRASAGISINKFIAKIASDINKPNGQKTINPEEVVSFLEELPINK 106
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G + N G+ DL K+++++L+ ++G +G ++I RGI +V+
Sbjct: 107 FFGIGKVTAAKMHN-YGIFKGADLKKWTKEELEATFG-KSGAQYYHIVRGIHNSQVKPNR 164
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 306
+ KS + ++F + + + L+++ EL +R+ + + K I TL + S F
Sbjct: 165 VRKSIAAERTF--TENISSEIYMIERLDKIAVELEKRMVASNTKGKTI--TLKIKYSDF 219
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 18/236 (7%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I L ++L T T SAG+++NKMLAK+AS +NKP + + + SL I++
Sbjct: 124 IAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGADFVASLAIERF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + + LG+ T DL + S + L+ +G G + +++ARGI V+A
Sbjct: 184 HGI-GKATAAHMHALGIQTGADLRRLSRETLRHEFG-KHGDFYYDMARGIDLRPVEAARE 241
Query: 249 PKSHGSGKSFPGPRALKTVASV-QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
KS GS +F R ++ A++ Q L Q E +D+++ HTLTL K
Sbjct: 242 RKSIGSETTF--ARDIEDHAALYQALLAQNREAF-----ADVQRRHLQPHTLTL---KLK 291
Query: 308 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 363
SD + + S P +ED L+E + V+ G YSG R
Sbjct: 292 YSDFSQTTRRQTLSTPF-----AREEDAHYWIARLLQEIAPARPVRLVGITYSGLR 342
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 120/301 (39%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M G A CP + V K Y+ + + I A E S+DE
Sbjct: 55 VRSAMSGKMAALKCPHLIFV-------KPRFDRYKEISTRIREIFYAYTDLVEPLSLDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD+T E+K GN S
Sbjct: 108 FLDVT------------------------------ENKVGNPS----------------- 120
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ +E SAGI++NK LAK AS +NKP Q + + L
Sbjct: 121 -----ATLIAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQDAESFL 175
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K + GK+ + LG+ DL +FS L + +G +G +NI RGI
Sbjct: 176 EKLPIEKFFGI-GKVTSEKMKSLGIHNGYDLKQFSLQFLTKRFG-KSGLHFYNIVRGIHL 233
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EVQ + KS + +F + S WL L E+ E L +E++ T+T
Sbjct: 234 SEVQPNRIRKSLSAENTFS-----TDLKSEVEWLAALS-EIFEELKRRVEKSGIKGRTVT 287
Query: 301 L 301
L
Sbjct: 288 L 288
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 125/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR+ G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYDKYRSVGHQIRRIFRRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD + D K+ VK
Sbjct: 121 DVTD--------------------------------NKLDIKSAVK-------------- 134
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
I ++ + +E TCSAG+++NK LAKLAS KP T V L
Sbjct: 135 ------IAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLPQDALSFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISHSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V+ + KS GS +++ A + + + E+S +R+ + L+++K++ T+
Sbjct: 247 VKPDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQEHKKLGKTV 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|291241885|ref|XP_002740840.1| PREDICTED: DNA-directed DNA polymerase eta-like [Saccoglossus
kowalevskii]
Length = 410
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 227 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 286
T WL ++ RGI E V+ R LPKS G GK+F G AL T V++WL QL E+ ERL
Sbjct: 2 TRAWLHDVGRGIDNEPVRPRQLPKSVGCGKNFSGKLALATRNEVKYWLLQLATEMEERLQ 61
Query: 287 SDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREF 346
+ E NKR+A ++++ + P ++ +G + DT + + +
Sbjct: 62 IESEMNKRVAKSVSVQVRWGGN---------PPQTASRSFGLHNMDADTISRNALSVIQC 112
Query: 347 LGSFGVKTQGSHYSGW--RITALSVSASKIVPVLS--GTCSIMKYFNGPDKFGST 397
T G+H W I LS+ ASK + G SI +F+G ++ ST
Sbjct: 113 FN-----TAGNHQKAWCPAIITLSMCASKFTETGNNIGKMSISSFFSGKEQSTST 162
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
gi|300076398|gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +++ V T TCS G+A NKMLAK++S ++KP T + + ++ + LP++K+
Sbjct: 142 VARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTILTPADIERRIWPLPVRKI 201
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L + LG+ TV DL + D L+ +G + WL +A+G+ VQ
Sbjct: 202 NGIGPKAAEKL-SALGIDTVADLAGAAPDLLRAHFGRSYAEWLGRVAQGVDDRPVQTYSE 260
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
PKS +F R L A + L+++ L +L +DL++ + T+ +
Sbjct: 261 PKSISRETTF--ERDLHARAD-RAQLSEIFTALCVKLAADLDRKGYVGRTIGI 310
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 62/244 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M A+ +CP + V VP D + YR+ +V I AR E S+DE
Sbjct: 56 VHSAMSVARAQRLCP--DAVYVP-----PDFNRYRDVSRQVRQIFARHTDLIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T V+++ L S D
Sbjct: 109 YLDVT-----------------VNKQGLPS---------ATD------------------ 124
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ +R ++L+ET T SAG+A NK LAK+AS +KP + + V L
Sbjct: 125 --------VARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQVLAFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP++K+ +G + L+ LGV TVGDL + + +L+ +G G L +++GI
Sbjct: 177 QPLPVRKVPGVGKVMQARLE-ALGVHTVGDLARHTAVELEHHFG-RYGIRLHELSQGIDR 234
Query: 241 EEVQ 244
EVQ
Sbjct: 235 REVQ 238
>gi|145502699|ref|XP_001437327.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404477|emb|CAK69930.1| unnamed protein product [Paramecium tetraurelia]
Length = 509
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 135/324 (41%), Gaps = 59/324 (18%)
Query: 6 MRGDEAKEVCPQIELVQV---PVARGKADLSS-------------------YRNAGSEVV 43
M DEA ++CP++ L V ++ GK S+ YR +
Sbjct: 57 MLADEALKLCPEVFLPHVETFKISEGKMIFSTIQDKFTQHNKIEEKISLKYYREESKLIF 116
Query: 44 SILARKGRC-ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGND 102
+I+ + C E+ DE Y+ ++ E L + P
Sbjct: 117 AIIKQFCGCVEKGGTDECYIQVS---ENELEKIEPHEF---------------------- 151
Query: 103 SKATVKEWLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKL 158
+ +C +D++ D + ++ ++R V KET++ CSAGI+ NKML+KL
Sbjct: 152 ----IGNLMCAIPSDYQLTEQDIQIMKASILCQQIRDAVYKETQYKCSAGISFNKMLSKL 207
Query: 159 ASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 218
AS NKP +QT + + + IKK++ GGK+ S + T+G + S +
Sbjct: 208 ASSTNKPNKQTIILECMLPECIAQFNIKKIRGFGGKIKHSFVKS-EIQTIGQAQQLSLSQ 266
Query: 219 LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 278
L+ + + ++++ RG EEV+ + + H S S + + ++ L +
Sbjct: 267 LEMLFA-DKAQYVYDKLRGYDNEEVK-KDSERKHKSILSLKNIKKTFSRDTINQSLELII 324
Query: 279 EELSERLCSDLEQNKRIAHTLTLH 302
+L+ R+ E + + + LH
Sbjct: 325 HDLTMRVTDYYEDSNLVPSVVVLH 348
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 173
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|418018528|ref|ZP_12658084.1| DNA polymerase IV [Streptococcus salivarius M18]
gi|345527377|gb|EGX30688.1| DNA polymerase IV [Streptococcus salivarius M18]
Length = 369
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +++ +KS
Sbjct: 119 YLDVT-----------------INKLGIKS------------------------------ 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 187 GKLPIEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVRPNRVRKSIGSERTY 262
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T V + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVVDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>gi|367019842|ref|XP_003659206.1| hypothetical protein MYCTH_2295926 [Myceliophthora thermophila ATCC
42464]
gi|347006473|gb|AEO53961.1| hypothetical protein MYCTH_2295926 [Myceliophthora thermophila ATCC
42464]
Length = 1172
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 136/303 (44%), Gaps = 46/303 (15%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVV-SILARKGRCERASIDEV 60
V + M +A+E+CP +++V D +Y A +IL G + SIDE
Sbjct: 407 VKNGMWMKDAQELCPSLKVVPY-------DFPAYEEASRLFYDTILGVGGVVQSVSIDEA 459
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+D+TD +L+ET S+ +G+ S+ +V W + AD
Sbjct: 460 LVDITDV---VLSET-------------GSNGVGV-------SEGSV--WREQEKADQ-- 492
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I T LR ++ K+T+ S GI N +LAK+A KPA Q + L
Sbjct: 493 --------IATTLRAEIKKKTDCHVSVGIGGNILLAKVALRKAKPAGQYQIRPEEALDTL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
L ++ + + +G L+ E+GV V DL + S+++L G TG LW ARGI
Sbjct: 545 GELKVEDLPGVAYSIGGKLE-EIGVLFVKDLRQTSKERLTTLLGPKTGKRLWEYARGIDR 603
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV + + KS + ++ G R + + ++ LC+EL RL ++ + K + +
Sbjct: 604 AEVGEQPVRKSVSADVNW-GIRFVNQ-EEAEEFVRNLCKELERRLLNEGVKGKHLTMKIM 661
Query: 301 LHA 303
A
Sbjct: 662 RRA 664
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 7/210 (3%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + +LI ++R ++ ++T SAG+++NK LAK+AS +NKP Q +
Sbjct: 114 LDVTENKKGINSAILIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILP 173
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ L+ LPI K +G +Q ++G+ DL +FS L + +G +G +N
Sbjct: 174 EDAEEFLEKLPIGKFFGIGKVTAEKMQ-KIGIHNGADLKQFSLQFLSKKFG-KSGLHYFN 231
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
I RGI EVQ + KS + +F L T + + L + EE+ RL + +
Sbjct: 232 IVRGIHLSEVQPHRVRKSLSAENTFEVD--LTTDEELLNKLQPIYEEVIRRLDKSGIKGR 289
Query: 294 RIAHTLTLHASAFK-SSDSDSRKKFPSKSC 322
+ TL L S F + S + +++P K
Sbjct: 290 TV--TLKLKYSDFSLQTRSKTLEQYPDKEM 317
>gi|238793960|ref|ZP_04637579.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
gi|238726727|gb|EEQ18262.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
Length = 352
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++ L LP+
Sbjct: 119 ATLIAQEIRQAIFDELSLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIQPFLHDLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G LQ ELG+ T GD+ + + +L + +G G LW + GI E+
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLVTCGDVQNYPQAELLKRFG-KFGHVLWERSHGIDEREISP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W + CE L ++L +LE R
Sbjct: 237 DRLRKSVGVERTL--------AEDIHDW--ESCEALIDQLYIELETRLR 275
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 173
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|297559858|ref|YP_003678832.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844306|gb|ADH66326.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 417
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ L V I +R +V +E TCS G+A + AKL S KP VP + V+G L
Sbjct: 139 RRLGGPVRIAAMIRERVRREQRLTCSVGVAATRFTAKLGSTHCKPDGLLLVPTAHVRGFL 198
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G + +L LGV TVG L ++ D L+ G GT L ++RG+
Sbjct: 199 DPLPVGALPGVGDRTEQTLAR-LGVRTVGQLARYEPDLLRMELGDKAGTRLAELSRGVDT 257
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
V KS GS ++F A V V L +L E++ RL
Sbjct: 258 SPVVPESPDKSIGSEETFDEDVADPEV--VDRELLRLAEKVGRRL 300
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 173
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 231
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ + + T SAGI+ NK LAK+AS NKP Q T+ V L++L IKK
Sbjct: 112 LIAYEIRKKIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINPDEVIEFLENLEIKK 171
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G K + + G+ T DL + S D L +G GT +NI RG+ VQ
Sbjct: 172 FFGIGKKTAEKMYH-FGIFTGKDLKEKSLDFLVTHFG-KAGTDYYNIVRGVHESPVQPNR 229
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 306
KS G+ ++F L + + L+ + EEL RL K I TL L S F
Sbjct: 230 KIKSVGTERTF--DENLSSEVFLMERLDLIVEELGLRLKKQNVAGKTI--TLKLKYSDF 284
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 96/242 (39%), Gaps = 60/242 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 63
S+M AK +CPQ V VP YR +++ ++ R Y D
Sbjct: 86 SAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTD 126
Query: 64 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 123
L + P SLDE D H K +
Sbjct: 127 LIE----------PLSLDE-----------------------------AYLDVTHNFKNI 147
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++L
Sbjct: 148 PYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETL 207
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
P+ K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V
Sbjct: 208 PLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPV 265
Query: 244 QA 245
+A
Sbjct: 266 KA 267
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYL 62
S+M A+ +CPQ V + + +YR +V++IL + E S+DE +L
Sbjct: 65 SAMSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 117
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T A + DG + +E L R HR
Sbjct: 118 DVTAA-----------------------------TTDGTLAVEIAREILDRI---HR--- 142
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
ET T SAG+++NK+LAKLAS KP +P L
Sbjct: 143 -----------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAP 185
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G L + +GV TV DL S + L +G +G W +++AR I
Sbjct: 186 LPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVARAIDERP 243
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
VQ KS G+ ++F K +A L L +E++ ++ + L+ HT+ +
Sbjct: 244 VQPSRQRKSVGTERTFS-----KNLADRSVMLTTL-QEMAAQVAARLQVLHLAGHTVHIK 297
Query: 303 A 303
A
Sbjct: 298 A 298
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++ SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K
Sbjct: 126 LIAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVSLFLEELEIRK 185
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ GK+ +LG+ T DL + + L+ ++G N G++ +N+ RGI V+
Sbjct: 186 FYGV-GKVTAEKMYKLGIFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHTSPVKPHR 243
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+PKS G+ ++F L + + L+ + EEL +RL
Sbjct: 244 IPKSVGAERTF--NENLSSEIFMLERLDHIAEELEKRL 279
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 62/284 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A+ +CP L+ P YR +V RK ++
Sbjct: 58 VRSAMSGMLAQRLCPG--LIFAP-----TRFERYREISEQV-----RK----------IF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE +++ E+K GN S +
Sbjct: 96 FDYTDLVE-------PLSLDE-------AYLDVTENKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
LI E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 126 ------LIAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPEDVLPFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+L I+K + GK+ +LG+ T DL + + L +G +G + +++ RG+
Sbjct: 180 ALDIRKFHGV-GKVTAEKMYQLGIFTGTDLKSKTIEFLSTHFG-KSGGYYYHVVRGVHTS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
EV+ + KS + ++F L + + L + EE+S RL
Sbjct: 238 EVKPNRIRKSLAAERTF--SENLSSEIFMLEKLQHIAEEVSRRL 279
>gi|322516146|ref|ZP_08069080.1| DNA-directed DNA polymerase IV [Streptococcus vestibularis ATCC
49124]
gi|322125391|gb|EFX96743.1| DNA-directed DNA polymerase IV [Streptococcus vestibularis ATCC
49124]
Length = 367
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +++ +KS
Sbjct: 119 YLDVT-----------------INKLGIKS------------------------------ 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYIGADLLKIPEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|118575583|ref|YP_875326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
gi|118194104|gb|ABK77022.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
Length = 363
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +++ V ++T TCS G+ N++L+K+AS KP T VP V L+ L I+ +
Sbjct: 130 LAQQVKNAVRRKTRLTCSVGVTPNRLLSKIASDYKKPDGLTVVPPGKVAEFLEPLDIRDI 189
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+GGK +L E+G+ TVG + +LQ+ +G +GT + N ARGI E V R
Sbjct: 190 PGIGGKTEKALA-EMGIRTVGQMRSVDIFELQQRFGRRSGTHMHNAARGIDDEPVSEREP 248
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
H + T+ + L E L E LC DL
Sbjct: 249 NVQHSR---------IVTLKRDSNEFGFLAETLGE-LCRDL 279
>gi|387760656|ref|YP_006067633.1| DNA polymerase IV [Streptococcus salivarius 57.I]
gi|339291423|gb|AEJ52770.1| DNA polymerase IV [Streptococcus salivarius 57.I]
Length = 351
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 48 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 100
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T + LG++S
Sbjct: 101 YLDVT------------------------INKLGIKS----------------------- 113
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 114 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 168
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G K L +++ + T DLLK E L + +G G L+ ARGIS
Sbjct: 169 GKLPIEKFHGVGKKSVERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISN 226
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 227 SPVRPNRVRKSIGSERTY 244
>gi|242096850|ref|XP_002438915.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
gi|241917138|gb|EER90282.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
Length = 1017
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ T+ T SAGIA N +LA+LA+ KP Q +P L SL IK +
Sbjct: 389 VTQRIRSEIFHATKCTASAGIAENMLLARLATRSAKPNGQCFIPSEKADDYLSSLSIKAL 448
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + L+++ + G L +D L + +G TG LWN RGI V +
Sbjct: 449 PGIGHTVSSKLKSK-EIEYCGQLRNVPKDALHKDFGKKTGDLLWNYCRGIDHSVVGSVQE 507
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
KS G+ ++ G R +H+L LC+E+S RL
Sbjct: 508 TKSVGAEINW-GVR-FNDNKDAEHFLTNLCKEVSLRL 542
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 4/171 (2%)
Query: 115 DADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS 174
D H K I E+R + E T SAG+A K LAK+AS MNKP Q + +
Sbjct: 111 DVTHCQKCSGSATWIAQEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPN 170
Query: 175 SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNI 234
V + +LP+ K+ + GK+ + ++G+ T D+ F + L +G G +W+
Sbjct: 171 EVSEFIKTLPLNKIPGV-GKVTSQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDF 228
Query: 235 ARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+ GI EVQA KS G ++ + T+ LN L +EL RL
Sbjct: 229 SHGIDDREVQAHRERKSVGVEQTL--IENIHTIEQASALLNNLYQELIRRL 277
>gi|365924462|ref|ZP_09447225.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265373|ref|ZP_14767934.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394428158|gb|EJF00745.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 361
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 48 RKGRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV 107
+K R A I E++ + TD E P + DE
Sbjct: 83 KKYRAVSAQIHEIFHEYTDIIE-------PIAFDE------------------------- 110
Query: 108 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQ 167
D K + ++I L+ ++ +T T S GI+HNK LAK+AS +KP
Sbjct: 111 ----AYLDVTQNKKEIHSPLIIARMLQQEIFSKTGLTSSTGISHNKFLAKMASDYHKPIG 166
Query: 168 QTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 227
T + + L LPI+K + +G K + +EL + T DLLK SE +L S+G
Sbjct: 167 TTLIREEDILSFLAPLPIEKFRGVGVKTAEKM-HELNINTGLDLLKKSELELIASFG-KM 224
Query: 228 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 278
G + RGI V+ + KS G+ ++F +ALK+ V+ N L
Sbjct: 225 GEIFYQHVRGIDERPVEWKRERKSMGNERTF--AQALKSTTEVEEMFNYLA 273
>gi|312863334|ref|ZP_07723572.1| putative DNA polymerase IV [Streptococcus vestibularis F0396]
gi|311100870|gb|EFQ59075.1| putative DNA polymerase IV [Streptococcus vestibularis F0396]
Length = 367
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T +++ +KS
Sbjct: 119 YLDVT-----------------INKLGIKS------------------------------ 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + DLLK E L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYIGADLLKIPEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ + I ++ + E + T SAG++ NK +AK+AS +NKP T + SS++ ++
Sbjct: 125 IGSAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFMEK 184
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K + GK+ +G+ T DL + SE+ L+ +G G + + I RGI E
Sbjct: 185 LPVEKFFGV-GKVTADKMKRMGLHTGADLKRLSENDLKTHFG-KVGAFYYRIVRGIDERE 242
Query: 243 VQARLLPKSHGSGKSFP 259
VQ KS G+ +FP
Sbjct: 243 VQPHRETKSLGAEDTFP 259
>gi|291085833|ref|ZP_06354175.2| DNA polymerase IV [Citrobacter youngae ATCC 29220]
gi|291069981|gb|EFE08090.1| DNA polymerase IV [Citrobacter youngae ATCC 29220]
Length = 352
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A ++ +I +R E S+DE
Sbjct: 54 VRSAMPTGMALKLCPHLTLLP-----GRYD--AYKEASRQIQAIFSRYTSLIEPLSLDEA 106
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+A C A
Sbjct: 107 YLDVTDSAH------------------------------------------CHGSA---- 120
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS +NKP Q + + V L
Sbjct: 121 ------TLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFL 174
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T D+ K+ L + +G G LW ++GI
Sbjct: 175 RTLPLGKIPGV-GKVSAAKLESMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDE 232
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V L KS G ++ + W CE + ERL +LE+
Sbjct: 233 RDVNNDRLRKSVGVERTL--------AEDIHEWSE--CEAIIERLYPELERR 274
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 140/322 (43%), Gaps = 71/322 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G AK CP + V AR K +++K R ++
Sbjct: 58 VRSAMSGYMAKRNCPDLIFVPPRFARYKE---------------ISQKIRA-------IF 95
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
D TD E P SLDE +++ +K GN S +
Sbjct: 96 YDYTDLVE-------PLSLDE-------AYLDVTVNKKGNPSAS---------------- 125
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L+ E+R ++ E T SAGI+ NK +AK+AS NKP Q TV V L+
Sbjct: 126 ------LLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLAFLE 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L I+K + GK+ ++G+ T DL S + L++ +G +G + +++ RGI
Sbjct: 180 ELEIRKFYGV-GKVTAEKMYKVGIFTGLDLKNKSLEFLEKHFG-KSGAYYYHVVRGIHNS 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ +PKS G+ ++F + ++S L +L E ++ L L+++K T+TL
Sbjct: 238 PVKPNRIPKSVGAERTFN-----ENLSSEIFMLERL-ENIANELERRLKKSKIAGKTITL 291
Query: 302 HASAFKSSDSDSRKKFPSKSCP 323
K SD + SK+ P
Sbjct: 292 -----KIKYSDFTLQTRSKTIP 308
>gi|239610626|gb|EEQ87613.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ER-3]
Length = 1171
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|51892170|ref|YP_074861.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
gi|81610604|sp|Q67QM6.1|DPO4_SYMTH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51855859|dbj|BAD40017.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
Length = 361
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
V + EL+ + E T SAG+++ K LAKLAS M KP T + + + LL +LP+
Sbjct: 117 AVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPV 176
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+K+ +G +L + LG+ T GDLL + D L++ +G L +ARGI V
Sbjct: 177 RKLWGVGPASEQAL-HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVP 234
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G +FP + + +L++L E ++ L +L + A T+T+
Sbjct: 235 YREAKSIGEENTFP------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|339480167|ref|ZP_08655826.1| DNA repair nucleotidyltransferase/DNA polymerase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 361
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ G + E+R Q+LKET+ T S G++HNK+LAKL S NKP T + + LD
Sbjct: 125 ILSGATLAAEIRHQILKETQLTSSIGVSHNKLLAKLGSEYNKPNGVTVIDHENQLQFLDY 184
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI + +G K +ELG+ DL + S++ L+ +G G L+ ARG+
Sbjct: 185 LPISAFRGVGKKTKEKF-DELGIENGLDLRQMSQETLKTEFG-KMGERLYWQARGVHFGA 242
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + +S G ++F AL +VQ +L L L++ K I TL +
Sbjct: 243 VEWQRQRQSIGKEETF--DHALHDNNAVQIEFKKLVSS----LIMSLKRQKLIGRTLNI 295
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 143/323 (44%), Gaps = 43/323 (13%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G AK++CP + +V + + YR EV ILA +DE
Sbjct: 149 VRAAMPGFIAKKLCPHLTIVPL-------NFEKYRKVSKEVKEILAEYDPHFMPMGLDEA 201
Query: 61 YLDLTDAAEAML--------AETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE--- 109
YL++T+ E L E+ E ++E + +I G + DG S + E
Sbjct: 202 YLNVTEHLEERLNWPEDKRRYFLNTENTTEKNKEDI--NIPGTVNIDGYSSSPELFEDGT 259
Query: 110 WLCRCDADHRDKLLACGVLI-------VTELRMQVLKETEFTCSAGIAHNKMLAKLASGM 162
+ D+ RD+ L V+ V E+R ++ ++T+ T SAGIA N MLAK+ S
Sbjct: 260 SVMDDDSGQRDQSLKNVVVFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDR 319
Query: 163 NKPAQQTTVP--FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ 220
NKP Q + +V + LPI+K+ + GK+ + LG+ T +L + +
Sbjct: 320 NKPNGQCRISPERQAVLDFIKDLPIRKVPGI-GKVTEKMLKALGIVTCSELY---QQRAL 375
Query: 221 ESYGFNTGTW--LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLC 278
S F+ +W +I+ G+ ++ G KS R ++ + + LC
Sbjct: 376 LSLLFSEASWRSFLDISLGLGSTHLE------KDGERKSMSTERTFSEISKAEDQYS-LC 428
Query: 279 EELSERLCSDLEQNKRIAHTLTL 301
+EL L DL++ T+TL
Sbjct: 429 QELCRELAQDLQKEGLKGKTVTL 451
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYL 62
S+M A+ +CPQ V + + +YR +V++IL + E S+DE +L
Sbjct: 82 SAMSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 134
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T A + DG + +E L D HR
Sbjct: 135 DVTAA-----------------------------TTDGTLAVEIAREIL---DRIHR--- 159
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
ET T SAG+++NK+LAKLAS KP +P L
Sbjct: 160 -----------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAP 202
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G L + +GV TV DL S + L +G +G W +++AR I
Sbjct: 203 LPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVARAIDERP 260
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 302
VQ KS G+ ++F K +A L L +E++ ++ + L+ HT+ +
Sbjct: 261 VQPSRQRKSVGTERTFS-----KNLADRSVMLTTL-QEMAAQVAARLQVLHLAGHTVHIK 314
Query: 303 A 303
A
Sbjct: 315 A 315
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 64/283 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEVYL 62
S+M A+ +CPQ V + + +YR +V++IL + E S+DE +L
Sbjct: 65 SAMSAARARSLCPQAIFV-------RPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFL 117
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T A + DG + +E L R HR
Sbjct: 118 DVTAA-----------------------------TTDGTLAVEIAREILDRI---HR--- 142
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
ET T SAG+++NK+LAKLAS KP +P L
Sbjct: 143 -----------------ETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERGLAFLAP 185
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+ K+ +G L + +GV TV DL S + L +G +G W +++AR I
Sbjct: 186 LPVGKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFG-KSGGWFYDVARAIDERP 243
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
VQ KS G+ ++F + L+ + ++ L ++ +++ RL
Sbjct: 244 VQPSRQRKSVGTERTF--SKNLEDRSVMRTTLQEMAAQVAARL 284
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G LI LR ++ +ET T SAG+ K +AK+AS ++KP T V + LP
Sbjct: 135 SGTLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLP 194
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
I+K +G +Q ELG+ T DL + E L +G G +A G VQ
Sbjct: 195 IEKFHGIGPVTAAKMQ-ELGIQTGADLQETPERTLIHHFG-KRGRHFKTLAVGTDDRPVQ 252
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 304
KS G+ ++FP + +A + L +L ++ER+ L Q R T+TL
Sbjct: 253 PDRDRKSVGAERTFP-----EDIARAETMLERLS-PIAERVAQRLRQANRKGRTVTLK-- 304
Query: 305 AFKSSDSDSRKKFPSKSCPLR 325
KS D + + PLR
Sbjct: 305 -LKSHDHQVSTRQTTVDRPLR 324
>gi|327348940|gb|EGE77797.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ATCC
18188]
Length = 1171
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ T SAGI++NK LAK+AS +NKP Q + + G +++LP+K+
Sbjct: 152 IALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKRF 211
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +Q G+ T DL S LQ +G +G++ + IARGI +V+A +
Sbjct: 212 HGVGPATAERMQRH-GIETGLDLKSKSLQFLQTHFG-KSGSYFYGIARGIDERQVRADRI 269
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 270 RKSVGAEDTF 279
>gi|212696530|ref|ZP_03304658.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
gi|212676466|gb|EEB36073.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
Length = 347
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+I +++ QVLK+T S GI++NK LAKLAS NKP + + + +L+ L IKK
Sbjct: 116 IIAKKIQNQVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINENDIPNILEDLDIKK 175
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ LG K L+ ++G+ V DLLK ++ L+ +G G +++ + RG +V+
Sbjct: 176 VHGLGNKSVEKLK-DIGIYKVKDLLKLDQEFLESLFG-KQGRYIYKVIRGEDKRKVETS- 232
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
K G+ F + K + + ++ +E+S+++ +DL+ A+T+ L
Sbjct: 233 -SKRKSIGREFTFRKNTKDMKILYAYI----DEISKKIENDLKAKDIKAYTINL 281
>gi|188025344|ref|ZP_02958315.2| hypothetical protein PROSTU_00018 [Providencia stuartii ATCC 25827]
gi|188023887|gb|EDU61927.1| DNA polymerase IV [Providencia stuartii ATCC 25827]
Length = 359
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK
Sbjct: 129 LIAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKK 188
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L + +G+ T GD+ + L + G G LW GI V
Sbjct: 189 IPGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDR 246
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 296
L KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 247 LRKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 292
>gi|408789869|ref|ZP_11201510.1| DNA polymerase IV [Lactobacillus florum 2F]
gi|408520891|gb|EKK20913.1| DNA polymerase IV [Lactobacillus florum 2F]
Length = 351
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M ++A+ +CPQ Q D + +R ++ I + E ++DE YL
Sbjct: 50 SAMPAEQARRLCPQAVFFQ-------PDFTLFRMVSDQIHQIFHEYTDQIESVALDEAYL 102
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD M + P WL
Sbjct: 103 DITD--NRMNVDNPV--------------------------------WLAHL-------- 120
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
L+ ++ ++T TCS GI++ K LAK AS KPA T + L
Sbjct: 121 ----------LQSEIWEKTHLTCSTGISYCKFLAKEASDYQKPAGMTMISEQEALPFLKR 170
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI++ + +G + ++ +LG+ T DL + SE L +G G L+ RGI
Sbjct: 171 LPIQRFRGVGKQTSIKME-QLGIKTGADLYQLSEALLINQFG-KLGYILYRRVRGIDDRP 228
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V + L KS G ++F L ++++Q L++L +E +CS L++++ TL L
Sbjct: 229 VIGQRLRKSLGKEETF--RHFLTELSAMQTVLSRLAKE----VCSGLQKSQLHGKTLVL 281
>gi|386742568|ref|YP_006215747.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
gi|384479261|gb|AFH93056.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
Length = 351
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK
Sbjct: 121 LIAQAIRQQIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L + +G+ T GD+ + L + G G LW GI V
Sbjct: 181 IPGVGKVTAQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 296
L KS G ++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 239 LRKSVGVERTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 284
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|336394740|ref|ZP_08576139.1| DNA-damage-inducible protein P [Lactobacillus farciminis KCTC 3681]
Length = 337
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 6/182 (3%)
Query: 127 VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 186
+ I ++ +++KET TCS GI++NK LAK+AS KP +T + K L +PI+
Sbjct: 97 IKIANYIQQRIVKETNLTCSVGISYNKFLAKMASDYRKPFGRTIILGKYAKEFLKPIPIE 156
Query: 187 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 246
K +G + L +E+ + T DL K +DK + +G G ++ GI V+
Sbjct: 157 KFNGIGKAMQEKL-HEMDIYTGEDLQKLDQDKFLQRFG-KMGYVIYKRVHGIDDAPVEGH 214
Query: 247 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 306
KS G +++ R L T + L+ L E +S+ L + K + L L S F
Sbjct: 215 RARKSIGRERTY--NRNLVTEEQIYRELDFLAELVSQDLKKKRQHGKTVV--LKLRNSDF 270
Query: 307 KS 308
++
Sbjct: 271 ET 272
>gi|309782562|ref|ZP_07677285.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
gi|308918653|gb|EFP64327.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
Length = 357
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP+ ++ +G L+ LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 175 ELPVDRLFGVGKVTAAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYATD--LRTLDDCQRELSVLVEQLAARV 274
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
IV E++ +VLKET T S GI++NK LAKLAS NKP + V +L L + +
Sbjct: 110 IVEEIKYKVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKIITKEMVPDILLPLSVSSV 169
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L N +G+ T+ +L++ ED L + +G +G ++N RGI V
Sbjct: 170 HGIGKKSSQKLNN-IGIYTIKELMRLPEDFLVDFFG-KSGREIYNRIRGIDNRTVNISSE 227
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G ++F K + +Q +L + EL L S Q K I TL + + F++
Sbjct: 228 RKSIGVERTFTNHTKNKEI--LQEYLYKFSLELELSLKSKEMQAKTI--TLKIKDTNFRT 283
>gi|283784106|ref|YP_003363971.1| DNA polymerase IV [Citrobacter rodentium ICC168]
gi|282947560|emb|CBG87113.1| DNA polymerase IV [Citrobacter rodentium ICC168]
Length = 351
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASEHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ +H G
Sbjct: 106 YLDVTDS----------------------THCHG-------------------------- 117
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS +NKP Q + V L
Sbjct: 118 ----SATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPEDVSDFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + E+G+ T GD+ + L + +G G + ++GI
Sbjct: 174 RTLPLAKIPGV-GKVSAAKLEEMGLRTCGDVQQCDLALLLKRFG-KFGRIIRERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWPE--CEAIIERLYPELERR 273
>gi|261195218|ref|XP_002624013.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
gi|239587885|gb|EEQ70528.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
Length = 1171
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I LR V + T S GI N + A++A KPA Q + +V + +L +K +
Sbjct: 507 IAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDL 566
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ LG L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV +
Sbjct: 567 PGVAHSLGAKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-A 624
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
P+ S + G R + A + ++ LC+EL RL +L + K++
Sbjct: 625 PRKSVSAEINWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|209882993|ref|XP_002142930.1| DNA polymerase eta [Cryptosporidium muris RN66]
gi|209558536|gb|EEA08581.1| DNA polymerase eta, putative [Cryptosporidium muris RN66]
Length = 717
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L+ G I+ +R ++L++ +TCSAGI+ NKMLAKL + KP Q+ + + +
Sbjct: 297 LILLGATIIYRVRNRLLQDLNYTCSAGISINKMLAKLVCSLRKPNGQSVLLSRWINQYMG 356
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTV-GDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K++ LGGKLG + +L + + DLL++++ L + +G G +L+N RGI
Sbjct: 357 ILPILKLRLLGGKLGKLVSEKLPMVRMSSDLLQYNKGTLIKLFGEKNGEYLYNTCRGIDL 416
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
E V +S S K+F L + + WL+ ELSER
Sbjct: 417 EAVIETQHYRSILSSKNFYS--GLDNLDEIFKWLHIFSSELSER 458
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D H + L I +R ++L++T T SAGIA NK LAK+AS KP Q +P
Sbjct: 109 LDVTHNKQNLPYASEIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPP 168
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQ--NELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
+ L +LP+ K+ +G K +LQ + LG+ T GDL K +L +G G L
Sbjct: 169 PRIAQFLLTLPLGKIPGVGKK---TLQKMHALGLQTAGDLQKMQRGELVNLFG-RWGYRL 224
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+++ARGI VQ + + + P L + V+H +L++ L + ++
Sbjct: 225 YDLARGIDNRPVQPQRERLQISTEITLPQDLPLSKI--VRH-----LADLAKDLWAQAQR 277
Query: 292 NKRIAHTLTL 301
+ AHTLTL
Sbjct: 278 KQVQAHTLTL 287
>gi|372270345|ref|ZP_09506393.1| DNA polymerase IV [Marinobacterium stanieri S30]
Length = 363
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 113/288 (39%), Gaps = 72/288 (25%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M A ++CP+++LV +AR YR ++ +I R G E SIDE YL
Sbjct: 67 SAMPSARALQLCPELKLVSGNMAR-------YREVAEQIFAIYRRFTGLIEPVSIDEAYL 119
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D D
Sbjct: 120 ----------------------------------------------------DVSDTDAF 127
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
I E+R QV +ET T SAG+A NK LAK+AS NKP + + +
Sbjct: 128 GGSATRIAEEIRTQVKQETGITVSAGVAQNKFLAKVASDWNKPDGLCVIAPAQQAEFVSQ 187
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP+KK+ +G + L LGV T +L S +L+ +G G LW +ARG E
Sbjct: 188 LPVKKIPGVGPRTQEKLMG-LGVGTCAELQSLSLIELKNHFG-KFGERLWQLARGEDERE 245
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
V+ KS +F + + ++H ++QL E+L DLE
Sbjct: 246 VRTHRERKSVSVEHTFS-----QDLPDLEHCMDQL-----EKLMDDLE 283
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 184
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G ++ LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 185 HGVGPATARRMRT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 242
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
KS G +F + L+T A + L +L ++
Sbjct: 243 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 105 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 164
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 165 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 222
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 223 RKSVGTERTF 232
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + ++ LPIKK
Sbjct: 130 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLPIKKF 189
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + LG+ T DL + S + L E +G +G + + IARGI E++ +
Sbjct: 190 HGVGPATAEKM-HRLGIETGADLKEKSFEFLVEHFG-KSGPYFYGIARGIDNREIKPNRV 247
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 248 RKSVGAEDTF 257
>gi|427736430|ref|YP_007055974.1| nucleotidyltransferase/DNA polymerase [Rivularia sp. PCC 7116]
gi|427371471|gb|AFY55427.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rivularia sp. PCC 7116]
Length = 360
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R ++ +ET+ T SAG++ NK LAK+ASG NKP T + + ++ LPI+K +
Sbjct: 133 IRKEIFQETKLTASAGVSINKFLAKMASGANKPNGMTVILPEQAQEFVEKLPIEKFHGI- 191
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
GK+ S +LG+ +L + + L +G G + +NIAR VQ + KS
Sbjct: 192 GKVTASKMKKLGIHNGANLKELKLEFLVRHFG-KAGNYYYNIARAEDNRAVQPNRIRKSI 250
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
G+ SF + L S+ L Q+ L +R LE+++ T+TL
Sbjct: 251 GAENSF--AKDLSDETSILRELEQIALTLQKR----LEKHQTSGRTITL 293
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 114 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 173
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 174 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 231
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 232 RKSVGTERTF 241
>gi|384415915|ref|YP_005625277.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|320016419|gb|ADV99990.1| DNA polymerase IV [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 352
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 184
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 185 HGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 242
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
KS G +F + L+T A + L +L ++
Sbjct: 243 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 273
>gi|108808712|ref|YP_652628.1| DNA polymerase IV [Yersinia pestis Antiqua]
gi|108811029|ref|YP_646796.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|145600117|ref|YP_001164193.1| DNA polymerase IV [Yersinia pestis Pestoides F]
gi|149364926|ref|ZP_01886961.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|161511436|ref|NP_992091.2| DNA polymerase IV [Yersinia pestis biovar Microtus str. 91001]
gi|162421814|ref|YP_001607653.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165926575|ref|ZP_02222407.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|165935841|ref|ZP_02224411.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|166212896|ref|ZP_02238931.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|167421635|ref|ZP_02313388.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423673|ref|ZP_02315426.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167467178|ref|ZP_02331882.1| DNA polymerase IV [Yersinia pestis FV-1]
gi|218930258|ref|YP_002348133.1| DNA polymerase IV [Yersinia pestis CO92]
gi|229838837|ref|ZP_04458996.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896011|ref|ZP_04511181.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|229899406|ref|ZP_04514549.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229901251|ref|ZP_04516373.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|294504948|ref|YP_003569010.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|384127272|ref|YP_005509886.1| DNA polymerase IV [Yersinia pestis D182038]
gi|384138931|ref|YP_005521633.1| DNA polymerase IV [Yersinia pestis A1122]
gi|420548296|ref|ZP_15046116.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|420553652|ref|ZP_15050898.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|420559256|ref|ZP_15055772.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|420564644|ref|ZP_15060606.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|420569691|ref|ZP_15065190.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|420575361|ref|ZP_15070322.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|420580671|ref|ZP_15075150.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|420586015|ref|ZP_15079991.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|420591130|ref|ZP_15084588.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|420596491|ref|ZP_15089408.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|420602178|ref|ZP_15094470.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|420607609|ref|ZP_15099380.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|420613002|ref|ZP_15104216.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|420618382|ref|ZP_15108904.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|420623663|ref|ZP_15113664.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|420628758|ref|ZP_15118288.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|420633882|ref|ZP_15122879.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|420639089|ref|ZP_15127568.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|420644535|ref|ZP_15132533.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|420649846|ref|ZP_15137335.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|420655496|ref|ZP_15142413.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|420660989|ref|ZP_15147329.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|420666281|ref|ZP_15152093.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|420671132|ref|ZP_15156514.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|420676485|ref|ZP_15161380.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|420682109|ref|ZP_15166460.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|420687445|ref|ZP_15171201.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|420692654|ref|ZP_15175773.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|420698427|ref|ZP_15180850.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|420704266|ref|ZP_15185490.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|420709604|ref|ZP_15190235.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|420715084|ref|ZP_15195104.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|420720594|ref|ZP_15199828.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|420726063|ref|ZP_15204643.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|420731652|ref|ZP_15209667.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|420736664|ref|ZP_15214194.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|420742140|ref|ZP_15219115.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|420747868|ref|ZP_15223957.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|420753296|ref|ZP_15228806.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|420759087|ref|ZP_15233462.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|420764360|ref|ZP_15238096.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|420769578|ref|ZP_15242776.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|420774559|ref|ZP_15247286.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|420780190|ref|ZP_15252244.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|420785777|ref|ZP_15257123.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|420790913|ref|ZP_15261741.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|420796437|ref|ZP_15266706.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|420801503|ref|ZP_15271257.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|420806852|ref|ZP_15276103.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|420812220|ref|ZP_15280924.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|420817701|ref|ZP_15285875.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|420823038|ref|ZP_15290664.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|420828117|ref|ZP_15295230.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|420833803|ref|ZP_15300365.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|420838668|ref|ZP_15304761.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|420843863|ref|ZP_15309477.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|420849525|ref|ZP_15314559.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|420855194|ref|ZP_15319357.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|420860383|ref|ZP_15323930.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|421764729|ref|ZP_16201517.1| DNA polymerase IV [Yersinia pestis INS]
gi|22095621|sp|Q8ZBZ9.1|DPO4_YERPE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123245611|sp|Q1C4D9.1|DPO4_YERPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123246681|sp|Q1CLD4.1|DPO4_YERPN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044621|sp|A4TPK8.1|DPO4_YERPP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|108774677|gb|ABG17196.1| DNA-damage-inducible protein P [Yersinia pestis Nepal516]
gi|108780625|gb|ABG14683.1| DNA-damage-inducible protein P [Yersinia pestis Antiqua]
gi|115348869|emb|CAL21825.1| DNA-damage-inducible protein P [Yersinia pestis CO92]
gi|145211813|gb|ABP41220.1| DNA-damage-inducible protein P [Yersinia pestis Pestoides F]
gi|149291339|gb|EDM41413.1| DNA-damage-inducible protein P [Yersinia pestis CA88-4125]
gi|162354629|gb|ABX88577.1| DNA polymerase IV [Yersinia pestis Angola]
gi|165915986|gb|EDR34593.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. IP275]
gi|165921503|gb|EDR38700.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. F1991016]
gi|166205683|gb|EDR50163.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. B42003004]
gi|166960554|gb|EDR56575.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167057843|gb|EDR67589.1| DNA polymerase IV [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681180|gb|EEO77274.1| DNA polymerase IV [Yersinia pestis Nepal516]
gi|229687808|gb|EEO79881.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. India
195]
gi|229695203|gb|EEO85250.1| DNA polymerase IV [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700934|gb|EEO88963.1| DNA polymerase IV [Yersinia pestis Pestoides A]
gi|262366936|gb|ACY63493.1| DNA polymerase IV [Yersinia pestis D182038]
gi|294355407|gb|ADE65748.1| DNA polymerase IV [Yersinia pestis Z176003]
gi|342854060|gb|AEL72613.1| DNA polymerase IV [Yersinia pestis A1122]
gi|391423288|gb|EIQ85787.1| DNA polymerase IV [Yersinia pestis PY-01]
gi|391423501|gb|EIQ85976.1| DNA polymerase IV [Yersinia pestis PY-02]
gi|391423731|gb|EIQ86187.1| DNA polymerase IV [Yersinia pestis PY-03]
gi|391438242|gb|EIQ99019.1| DNA polymerase IV [Yersinia pestis PY-04]
gi|391439370|gb|EIR00033.1| DNA polymerase IV [Yersinia pestis PY-05]
gi|391443104|gb|EIR03452.1| DNA polymerase IV [Yersinia pestis PY-06]
gi|391455219|gb|EIR14358.1| DNA polymerase IV [Yersinia pestis PY-07]
gi|391456075|gb|EIR15135.1| DNA polymerase IV [Yersinia pestis PY-08]
gi|391457889|gb|EIR16794.1| DNA polymerase IV [Yersinia pestis PY-09]
gi|391470945|gb|EIR28549.1| DNA polymerase IV [Yersinia pestis PY-10]
gi|391472365|gb|EIR29832.1| DNA polymerase IV [Yersinia pestis PY-11]
gi|391473326|gb|EIR30714.1| DNA polymerase IV [Yersinia pestis PY-12]
gi|391487070|gb|EIR43046.1| DNA polymerase IV [Yersinia pestis PY-13]
gi|391488589|gb|EIR44416.1| DNA polymerase IV [Yersinia pestis PY-15]
gi|391488735|gb|EIR44547.1| impB/mucB/samB family protein [Yersinia pestis PY-14]
gi|391503029|gb|EIR57266.1| DNA polymerase IV [Yersinia pestis PY-16]
gi|391503200|gb|EIR57414.1| DNA polymerase IV [Yersinia pestis PY-19]
gi|391508302|gb|EIR62055.1| DNA polymerase IV [Yersinia pestis PY-25]
gi|391518979|gb|EIR71651.1| DNA polymerase IV [Yersinia pestis PY-29]
gi|391520513|gb|EIR73061.1| DNA polymerase IV [Yersinia pestis PY-34]
gi|391521422|gb|EIR73888.1| DNA polymerase IV [Yersinia pestis PY-32]
gi|391533412|gb|EIR84686.1| DNA polymerase IV [Yersinia pestis PY-36]
gi|391536535|gb|EIR87511.1| DNA polymerase IV [Yersinia pestis PY-42]
gi|391538959|gb|EIR89716.1| impB/mucB/samB family protein [Yersinia pestis PY-45]
gi|391551942|gb|EIS01407.1| DNA polymerase IV [Yersinia pestis PY-46]
gi|391552172|gb|EIS01621.1| DNA polymerase IV [Yersinia pestis PY-47]
gi|391552555|gb|EIS01970.1| DNA polymerase IV [Yersinia pestis PY-48]
gi|391566782|gb|EIS14728.1| DNA polymerase IV [Yersinia pestis PY-52]
gi|391567935|gb|EIS15735.1| DNA polymerase IV [Yersinia pestis PY-53]
gi|391572454|gb|EIS19684.1| impB/mucB/samB family protein [Yersinia pestis PY-54]
gi|391581260|gb|EIS27162.1| DNA polymerase IV [Yersinia pestis PY-55]
gi|391583349|gb|EIS29015.1| DNA polymerase IV [Yersinia pestis PY-56]
gi|391593926|gb|EIS38164.1| DNA polymerase IV [Yersinia pestis PY-58]
gi|391596894|gb|EIS40770.1| DNA polymerase IV [Yersinia pestis PY-60]
gi|391598059|gb|EIS41825.1| DNA polymerase IV [Yersinia pestis PY-59]
gi|391611336|gb|EIS53525.1| DNA polymerase IV [Yersinia pestis PY-61]
gi|391611821|gb|EIS53957.1| DNA polymerase IV [Yersinia pestis PY-63]
gi|391614611|gb|EIS56458.1| DNA polymerase IV [Yersinia pestis PY-64]
gi|391624536|gb|EIS65159.1| DNA polymerase IV [Yersinia pestis PY-65]
gi|391629003|gb|EIS68989.1| DNA polymerase IV [Yersinia pestis PY-66]
gi|391635197|gb|EIS74386.1| DNA polymerase IV [Yersinia pestis PY-71]
gi|391637196|gb|EIS76143.1| DNA polymerase IV [Yersinia pestis PY-72]
gi|391647229|gb|EIS84881.1| DNA polymerase IV [Yersinia pestis PY-76]
gi|391650790|gb|EIS88039.1| DNA polymerase IV [Yersinia pestis PY-88]
gi|391655172|gb|EIS91939.1| DNA polymerase IV [Yersinia pestis PY-89]
gi|391660127|gb|EIS96316.1| impB/mucB/samB family protein [Yersinia pestis PY-90]
gi|391667690|gb|EIT02990.1| DNA polymerase IV [Yersinia pestis PY-91]
gi|391677177|gb|EIT11506.1| DNA polymerase IV [Yersinia pestis PY-93]
gi|391677928|gb|EIT12194.1| DNA polymerase IV [Yersinia pestis PY-92]
gi|391678432|gb|EIT12645.1| impB/mucB/samB family protein [Yersinia pestis PY-94]
gi|391691130|gb|EIT24081.1| DNA polymerase IV [Yersinia pestis PY-95]
gi|391694090|gb|EIT26785.1| DNA polymerase IV [Yersinia pestis PY-96]
gi|391695768|gb|EIT28314.1| DNA polymerase IV [Yersinia pestis PY-98]
gi|391708019|gb|EIT39312.1| DNA polymerase IV [Yersinia pestis PY-99]
gi|391711355|gb|EIT42327.1| DNA polymerase IV [Yersinia pestis PY-100]
gi|391712250|gb|EIT43147.1| DNA polymerase IV [Yersinia pestis PY-101]
gi|391724090|gb|EIT53702.1| DNA polymerase IV [Yersinia pestis PY-102]
gi|391724833|gb|EIT54368.1| DNA polymerase IV [Yersinia pestis PY-103]
gi|391727480|gb|EIT56691.1| DNA polymerase IV [Yersinia pestis PY-113]
gi|411174280|gb|EKS44313.1| DNA polymerase IV [Yersinia pestis INS]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|169830932|ref|YP_001716914.1| DNA polymerase IV [Candidatus Desulforudis audaxviator MP104C]
gi|169637776|gb|ACA59282.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
MP104C]
Length = 395
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I L+ ++ +E TCS GI NK+LAK+A+G+ KP T + V L LP++++
Sbjct: 124 IALALKRRIRREVGVTCSVGIGPNKLLAKMAAGLRKPDGLTVLRHEDVPARLWPLPVREL 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L+ LG+ T+GDL F L+ +G G LW A G+ V R L
Sbjct: 184 FGVGPRYEEHLRR-LGIRTIGDLASFPVRVLKMRFGVY-GELLWRCANGVDESPVDPRSL 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ +G PR + ++ + +L ++++ R+ + + + L+L + F+
Sbjct: 242 DRCKSAGHQITLPRDYRRHGEIRVVILELADQVAARVRAGGYAGRTV--VLSLKDAGFR 298
>gi|161484857|ref|NP_668289.2| DNA polymerase IV [Yersinia pestis KIM10+]
gi|270489441|ref|ZP_06206515.1| DNA polymerase IV [Yersinia pestis KIM D27]
gi|270337945|gb|EFA48722.1| DNA polymerase IV [Yersinia pestis KIM D27]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|404396203|ref|ZP_10987998.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
gi|348614689|gb|EGY64228.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
Length = 340
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V + G +
Sbjct: 98 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVA 157
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LP+ ++ +G L+ LG T GDL + D+LQ+ +G G L ++ RGI
Sbjct: 158 ELPVDRLFGVGKVTAAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHR 215
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L+ L E+L+ R+
Sbjct: 216 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELSVLVEQLAARV 257
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R +L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+
Sbjct: 126 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAF 185
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + LG+ T DL +FS D L++ +G + + IARG V+
Sbjct: 186 HGVGPATARRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRP 243
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
KS G +F + L+T A + L +L ++
Sbjct: 244 RKSLGKEVTF--EQDLRTPAELHAALRELASKV 274
>gi|429730965|ref|ZP_19265607.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
gi|429146693|gb|EKX89741.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
Length = 458
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
LR + +ET T S G K AK+ASG KP VP + LLD LP++K+ +G
Sbjct: 128 LRRLIREETGLTSSIGAGSGKQYAKIASGQAKPDGVFVVPRAREHELLDPLPVRKLWGIG 187
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
T LQ +GV T+GD K S ++ + G G LW +A+G V+ R + K
Sbjct: 188 PVAETKLQR-IGVATIGDFAKLSGVEVDMTLGSTVGRALWQLAKGHDDRPVEPRAIAKQI 246
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 312
+ ++ + L TVA + +++ RL +D R A T+TL K +D
Sbjct: 247 SAEHTY--SKDLTTVADIDAAIDRAASGAYRRLLTD----GRGARTVTLK---LKMADF- 296
Query: 313 SRKKFPSKSCPLRYGT 328
+ S+S L Y T
Sbjct: 297 ---RIESRSQSLLYAT 309
>gi|167771592|ref|ZP_02443645.1| hypothetical protein ANACOL_02964 [Anaerotruncus colihominis DSM
17241]
gi|167666232|gb|EDS10362.1| ImpB/MucB/SamB family protein [Anaerotruncus colihominis DSM 17241]
Length = 415
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+L G + T++R ++ +E T S G++ NK+ AKL S +NKP T + + K +
Sbjct: 119 ELFGDGPAVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQV 178
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+K + + G+ T G+TT+G L + L+ +G G LW A G+
Sbjct: 179 WPLPVKTLLYV-GRATTGKLKSYGITTIGALAQAPITFLEHRFG-KIGRMLWMFANGLDT 236
Query: 241 EEVQ---ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
V A+ L KS G+ + PR L T ++ L LCE +S RL + K +A
Sbjct: 237 SPVSNIGAKSLIKSIGNSTT--APRDLITDQEIKITLYALCESISARLREHSFRCKTVA- 293
Query: 298 TLTLHASAFKSSDSDSRKKFPS 319
LT+ S+ S + K PS
Sbjct: 294 -LTIRDSSLTSFERQLALKRPS 314
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 84/309 (27%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK---------GRC 52
V S+M +A E+CP+ + +R +G E+ +++K +
Sbjct: 60 VHSAMSSSKALELCPK---------------AVFRFSGFELYRAVSQKIHDIFHEYTDKV 104
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLC 112
E ++DE YLD+TD K HI +DS
Sbjct: 105 ESVALDEAYLDITDN---------------------KRHI--------SDS--------- 126
Query: 113 RCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP 172
+ G +I E +LK+T+ TCS G+++NK LAK AS KP T +
Sbjct: 127 ----------IQVGRMIQAE----ILKQTKLTCSVGVSYNKFLAKEASDYAKPFGLTVIE 172
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLW 232
L LPI+K + +G K + ++LG+ DL+++S+ L + +G G L+
Sbjct: 173 PKDAIEFLKRLPIEKFRGVGKKTVPKM-HDLGINDGADLIQWSQMDLIKHFG-KFGYVLY 230
Query: 233 NIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
ARGI V+ + KS G ++F GP Q ++ + ++E + ++++Q
Sbjct: 231 ERARGIDKRPVEYARVRKSVGKERTF-GPE-----LENQSQVDDQLKHIAEMVAAEMQQK 284
Query: 293 KRIAHTLTL 301
K+ TL L
Sbjct: 285 KKHGKTLVL 293
>gi|354596399|ref|ZP_09014416.1| DNA polymerase IV [Brenneria sp. EniD312]
gi|353674334|gb|EHD20367.1| DNA polymerase IV [Brenneria sp. EniD312]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 18/236 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
L+ E+R + E T SAG+A K LAK+AS +NKP Q +P + + LP+
Sbjct: 119 ATLMAEEIRQAIAAELNLTASAGVAPIKFLAKVASELNKPNGQFVIPPDRMDAFILQLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G L+ E G+ T D+ +S +L ++G G LW GI V
Sbjct: 179 AKIPGVGKVTAKRLE-EKGLLTCADVRHYSLAELLRNFG-KFGRVLWERCHGIDERSVSP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHAS 304
L KS G K+ + HW CE L E+L +LE + KR+ L +
Sbjct: 237 DRLRKSVGVEKTL--------AQDIHHW--HECEGLIEQLYQELELRLKRVKPDLHIARQ 286
Query: 305 AFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 360
K D R+ P+ ++D L Q RE GV+ G H +
Sbjct: 287 GVKLKFDDFRQTTQEHVWPVLN-----KQDLLTLAQQTWRERRDKRGVRLVGLHVT 337
>gi|398338012|ref|ZP_10522717.1| DNA polymerase IV [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 362
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + V I E+R ++LK T+ T S G+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVTIAKEIRAEILKRTQLTASVGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V +D LP+ + GK+ ELG+ T DL + D+L +G G + +
Sbjct: 169 DDVISFIDPLPVSSFHGV-GKVTAQKMEELGIRTGKDLRAKNIDELISHFG-KMGIYYYK 226
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
I+RG EVQ+ KS G+ +F + + + + L ++ E+ +RL
Sbjct: 227 ISRGEDDREVQSSRERKSLGAETTFEQDKVDR--EDLLYQLREVAVEVEDRL 276
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 242 RKSVGTEHTF 251
>gi|417331453|ref|ZP_12115694.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585430|gb|EHC45268.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 298
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|166010983|ref|ZP_02231881.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167399408|ref|ZP_02304932.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|384123416|ref|YP_005506036.1| DNA polymerase IV [Yersinia pestis D106004]
gi|45435409|gb|AAS60968.1| DNA-damage-inducible protein P [Yersinia pestis biovar Microtus
str. 91001]
gi|165989983|gb|EDR42284.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. E1979001]
gi|167051912|gb|EDR63320.1| DNA polymerase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|262363012|gb|ACY59733.1| DNA polymerase IV [Yersinia pestis D106004]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 117 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 176
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 177 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 234
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 235 EREISPDRLRKSVGVEKTL 253
>gi|21957698|gb|AAM84540.1|AE013699_2 damage-inducible protein P; putative tRNA synthetase [Yersinia
pestis KIM10+]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 117 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 176
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T GD+ K+ +L + +G G LW + GI
Sbjct: 177 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGDIQKYPLAELLKHFG-KFGRVLWERSHGID 234
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 235 EREISPDRLRKSVGVEKTL 253
>gi|395231474|ref|ZP_10409763.1| DNA polymerase IV [Citrobacter sp. A1]
gi|421845641|ref|ZP_16278794.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424731297|ref|ZP_18159882.1| dna polymerase iv [Citrobacter sp. L17]
gi|394714777|gb|EJF20673.1| DNA polymerase IV [Citrobacter sp. A1]
gi|411773176|gb|EKS56747.1| DNA polymerase IV [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894271|gb|EKU34085.1| dna polymerase iv [Citrobacter sp. L17]
gi|455646713|gb|EMF25740.1| DNA polymerase IV [Citrobacter freundii GTC 09479]
Length = 351
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ + +Y+ A ++ +I +R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRYE--AYKEASRQIQAIFSRYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ +H G
Sbjct: 106 YLDVTDS----------------------THCHG-------------------------- 117
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS +NKP Q + + V L
Sbjct: 118 ----SATLIAQEIRQTIFTELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T D+ K+ L + +G G LW ++GI
Sbjct: 174 RTLPLGKIPGV-GKVSAAKLEAMGLRTCEDVQKYDLAMLLKRFG-KFGRVLWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V L KS G ++ + W CEE+ ERL +LE+
Sbjct: 232 RDVNNDRLRKSVGVERTL--------AEDIHEWAE--CEEIIERLYPELERR 273
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 96/242 (39%), Gaps = 60/242 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 63
S+M AK +CPQ V VP YR +++ ++ R Y D
Sbjct: 56 SAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTD 96
Query: 64 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 123
L + P SLDE D H K +
Sbjct: 97 LIE----------PLSLDE-----------------------------AYLDVTHNFKNI 117
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++L
Sbjct: 118 PYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETL 177
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
P+ K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V
Sbjct: 178 PLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPV 235
Query: 244 QA 245
+A
Sbjct: 236 KA 237
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K +A I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 114 LDVTENLKGMAIATEIALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 173
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
++ +++LP+KK +G ++ +LG+ T DL S LQE +G +G + +
Sbjct: 174 NNGPSFVEALPVKKFHGVGPATAERMR-KLGIETGLDLKSKSLIFLQEHFG-KSGPYFYG 231
Query: 234 IARGISGEEVQARLLPKSHGSGKSF 258
+ARGI V+A + KS G+ +F
Sbjct: 232 VARGIDERRVRADRIRKSVGAEDTF 256
>gi|293392667|ref|ZP_06636986.1| DNA-directed DNA polymerase IV [Serratia odorifera DSM 4582]
gi|291424784|gb|EFE97994.1| DNA-directed DNA polymerase IV [Serratia odorifera DSM 4582]
Length = 354
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 116/295 (39%), Gaps = 73/295 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ +++Y+ A + I AR E S+DE
Sbjct: 53 VHSAMSSAMALKLCPHLTLL-------PGRMAAYKEASQHIREIFARYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ RC+
Sbjct: 106 YLDVTDSP--------------------------------------------RCNGS--- 118
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI +R + E + T SAGIA K LAK+AS +NKP Q + + V L
Sbjct: 119 -----ATLIAEHIRQAIFDELQLTASAGIAPIKFLAKIASELNKPNGQYVITPAQVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ K+ +G L+ E+G+ T D+ ++ L + +G G LW +GI
Sbjct: 174 QQLPLSKIPGVGKVTAKRLE-EVGLLTCADVQRYDLAALLKRFG-KFGRVLWERCQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL-SERLCSDLEQNKR 294
V L KS G ++ A + W Q CE+L ++L +LE R
Sbjct: 232 RSVSPERLRKSVGVERTL--------AADIHDW--QDCEQLIVDKLYPELEMRLR 276
>gi|332798579|ref|YP_004460078.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|438001559|ref|YP_007271302.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|332696314|gb|AEE90771.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|432178353|emb|CCP25326.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
Length = 396
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 64/308 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M +A+++CPQ + K D Y +V+SIL R + E SIDE
Sbjct: 54 VKTAMPKWQAEKLCPQAVFI-------KPDYDLYLRTSQKVMSILGRFSPQIEIFSIDEA 106
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD + G E
Sbjct: 107 WLD----------------------------VTGCE------------------------ 114
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+L V I +++ + KE + CS G++ NK+LAK+AS M KP T + V LL
Sbjct: 115 RLFGDSVAIARKIQAAIAKELDLLCSIGVSCNKLLAKMASDMKKPNAITVLTTEDVPKLL 174
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ ++ +G ++ L+ + + T+GDL + ++ L++++G N G++L A GI
Sbjct: 175 WPLPVNELFGVGRRMAEKLK-RMNIKTIGDLAEAPQEFLEKAFGLN-GSYLHLWANGIDD 232
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V + + G S P+ + + + L L E++ R+ + + + T+T
Sbjct: 233 SAVNPHSMDDAKSMGHSITLPKDITSFDDAEIVLLFLSEQVGRRVRRENYMGRTV--TVT 290
Query: 301 LHASAFKS 308
L ++F +
Sbjct: 291 LRYASFDT 298
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D + + LI ++ ++L ET T SAG+++NK LAK+AS M+KP +
Sbjct: 110 LDVTYTESFNGSATLIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRP 169
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ ++ LPI K +G ++N LGV T DL + S +L E +G +G + +N
Sbjct: 170 EQGQEFVNKLPIGKFHGIGPATEIKMKN-LGVHTGHDLRQKSLTELSERFG-KSGQYYYN 227
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
IAR I V+++ + KS G +F + + S+ LN + +++E++ L ++
Sbjct: 228 IARAIDDRPVRSQRIRKSLGKETTFA-----EDILSIPD-LNNILLDVAEQVLGSLSKHN 281
Query: 294 RIAHTLTL 301
T+T+
Sbjct: 282 MQGRTVTV 289
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 127/301 (42%), Gaps = 69/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M A+ +CP + + VP D + Y+ +V +I R E S+DE
Sbjct: 55 VRSAMPAVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ P+S G+E
Sbjct: 108 YLDVTE----------PKS--------------GIE------------------------ 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L
Sbjct: 120 --LATD--IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFL 175
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ ++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI
Sbjct: 176 APLPVNRVPGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDE 233
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ +S S +F L+ L + +L+ + + + +RI HT+
Sbjct: 234 RPVEPDQQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVV 286
Query: 301 L 301
L
Sbjct: 287 L 287
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 136/323 (42%), Gaps = 73/323 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSI-LARKGRCERASIDEV 60
V S+M AK CP + + K YR +++ +I L E S+DE
Sbjct: 44 VKSAMSSVIAKRNCPDLIFI-------KPRFERYREISNQIRAIFLEYTDLVEPLSLDEA 96
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K GN S
Sbjct: 97 YLDVT------------------------------ENKKGNPS----------------- 109
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R ++ +T SAGI+ NK +AK+AS +NKP Q T+ V L
Sbjct: 110 -----ATLIAREIREKIKNKTGLNASAGISVNKFIAKIASDINKPNGQKTINPEDVLEFL 164
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ L ++K + GK+ +LG+ DL + S + L E++G +G +N+ RGI
Sbjct: 165 EKLQVRKFHGV-GKVTAEKMYQLGIFNGFDLKQKSLEFLIENFG-KSGLHYYNVVRGIHL 222
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV+ + KS G+ ++F T S + ++ + + ++E + L+++K T+T
Sbjct: 223 SEVKPNRIRKSLGAERTFD------TNISSEIFMLERLQNIAEEIERRLQKSKVAGKTVT 276
Query: 301 LHASAFKSSDSDSRKKFPSKSCP 323
L K SD + SK+ P
Sbjct: 277 L-----KIKYSDFTQHTRSKTLP 294
>gi|386309576|ref|YP_006005632.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|418241392|ref|ZP_12867921.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550652|ref|ZP_20506696.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
gi|318604550|emb|CBY26048.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|351779193|gb|EHB21311.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789787|emb|CCO69736.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
Length = 352
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R ++ E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIVIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|289806282|ref|ZP_06536911.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 288
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|372268863|ref|ZP_09504911.1| DNA-directed DNA polymerase [Alteromonas sp. S89]
Length = 304
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 119/280 (42%), Gaps = 70/280 (25%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 69
+AK++CP +L+ VP ++ YR + I E++L TD E
Sbjct: 5 QAKKLCP--DLIVVP-----GNMKKYREVSEQ---------------IREIFLSYTDFIE 42
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
P SLDE +L D+ H + LI
Sbjct: 43 -------PLSLDEA--------------------------YLDVTDSPHCN---GSATLI 66
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
E+R +V ++ T SAG+A NK LAK+AS KP T + ++V+ + LPIKK+
Sbjct: 67 AQEIRARVQQDLGITISAGVAPNKFLAKIASDWQKPDGLTVIHPNAVEDFVLRLPIKKIH 126
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
+G +Q + G+ T DL ++S+ +L + YG G L+ + RGI +V
Sbjct: 127 GVGRVTAEKMQRQ-GIRTCSDLRRYSQIELAQKYG-KFGNRLYQLCRGIDDRKVS----- 179
Query: 250 KSHGSGKSFPGPRALK----TVASVQHWLNQLCEELSERL 285
S G+ KS R + T+ S Q + L L ER+
Sbjct: 180 -SDGARKSVSVERTFRDDLITLESWQKEMIHLYGRLQERM 218
>gi|335996993|ref|ZP_08562910.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
gi|335352063|gb|EGM53554.1| DNA polymerase IV [Lactobacillus ruminis SPM0211]
Length = 366
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 103/261 (39%), Gaps = 62/261 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M +EA +CP + V VP D YR E+ I + E + DE
Sbjct: 57 VHSAMNANEALNLCP--DAVFVP-----PDFKKYRRVSKEIHEIFHEYTDKIEPIAFDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LGL+S
Sbjct: 110 YLDVTECK------------------------LGLKS----------------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L
Sbjct: 123 -----ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
L I+K + +G K + +ELGV DL SE L +G G + + RGI
Sbjct: 178 LPLKIEKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDD 235
Query: 241 EEVQARLLPKSHGSGKSFPGP 261
EV+ + KS G ++F P
Sbjct: 236 REVEWQRERKSFGVERTFNMP 256
>gi|414157895|ref|ZP_11414189.1| DNA polymerase IV [Streptococcus sp. F0441]
gi|410870440|gb|EKS18397.1| DNA polymerase IV [Streptococcus sp. F0441]
Length = 353
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 123/318 (38%), Gaps = 68/318 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + Y+ G E+ +I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYEKYKAVGLEIRAIFKRYTDLIEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V I ++ + +E T SAGI++NK LAK+AS KP T + + L
Sbjct: 132 -----AVKIARLIQQDIWQELRLTASAGISYNKFLAKMASDYQKPHGLTVILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ I K +G K L +E+G+ T DLL SE L + +G G L+ ARGI
Sbjct: 187 KQMDIAKFHGVGKKTVERL-HEMGIYTGEDLLAVSEVTLIDRFG-RLGFDLYRKARGIHN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+A + KS G K++ + V+ + + LSE++ +L Q + +
Sbjct: 245 SPVKANRIRKSIGKEKTYG------KILQVEEDIKKELTLLSEKVAHNLSQQGKAGKIII 298
Query: 301 LHASAFKSSDSDSRKKFP 318
L S RK P
Sbjct: 299 LKIRYADFSTLTRRKSLP 316
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 127/301 (42%), Gaps = 69/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M A+ +CP + + VP D + Y+ +V +I R E S+DE
Sbjct: 55 VRSAMPAVRAERLCP--DAIFVP-----PDFARYKAVSQQVRAIFLRHTDLVEPLSLDEA 107
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ P+S G+E
Sbjct: 108 YLDVTE----------PKS--------------GIE------------------------ 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LA I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L
Sbjct: 120 --LATD--IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFL 175
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LP+ ++ +G + L G+ T GDL +++ L+E++G + G L+N ARGI
Sbjct: 176 APLPVNRVPGVGKVMEGKLAAR-GIATCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDE 233
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ +S S +F L+ L + +L+ + + + +RI HT+
Sbjct: 234 RPVEPDQQVQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVV 286
Query: 301 L 301
L
Sbjct: 287 L 287
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 96/242 (39%), Gaps = 60/242 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLD 63
S+M AK +CPQ V VP YR +++ ++ R Y D
Sbjct: 56 SAMSVATAKRLCPQA--VYVP-----PHFDLYRQVSAQIHAVFRR------------YTD 96
Query: 64 LTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLL 123
L + P SLDE D H K +
Sbjct: 97 LIE----------PLSLDE-----------------------------AYLDVTHNFKNI 117
Query: 124 ACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL 183
+ TE+R + E T SAGIA NK LAK+AS KP Q +P + L++L
Sbjct: 118 PYASEVATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKIMAFLETL 177
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
P+ K+ + GK+ LG+ T GDL +F +L +G G L+++ARG V
Sbjct: 178 PLGKIPGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPV 235
Query: 244 QA 245
+A
Sbjct: 236 KA 237
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ + T T SAG+++NK LAKLAS KP +P + + LPI +
Sbjct: 127 IAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGPEFVHGLPIGRF 186
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +++ G+ T DL + + + L +G +GT+ WNIARGI EV+ +
Sbjct: 187 HGIGPATAARMESH-GILTGADLARQTLEFLTARFG-KSGTYYWNIARGIDTREVKPNRI 244
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G+ ++ L+ + + L E L++++ R+ T+TL K
Sbjct: 245 RKSIGAENTY--FEDLRDLPAAHEAL----EVLADKVWRHATNAGRVGRTVTL-----KV 293
Query: 309 SDSDSRKKFPSKSCP 323
D R+ ++S P
Sbjct: 294 KYGDFRQITRARSLP 308
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
V I ++ ++L++T TCSAG+++NK LAK+ S +NKP T +P +L +LPI
Sbjct: 119 AVKIAKLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPPEKASEILFALPI 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+K +G L+ + G+ DL K+ L G G + + + RGI EV
Sbjct: 179 EKFYGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLG-KAGHFYYYVVRGIDKREVIT 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
PKS +F + + + L QL E LS RL
Sbjct: 237 EFEPKSLSCETTF--YEDIDNLDYLLIILQQLAERLSNRL 274
>gi|367044028|ref|XP_003652394.1| hypothetical protein THITE_2113850 [Thielavia terrestris NRRL 8126]
gi|346999656|gb|AEO66058.1| hypothetical protein THITE_2113850 [Thielavia terrestris NRRL 8126]
Length = 1158
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 46/303 (15%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVV-SILARKGRCERASIDEV 60
V + M A+E+CP +++V D +Y A +IL G + SIDE
Sbjct: 408 VRNGMWMKRAQELCPDLKVVPY-------DFPAYEEASRLFYEAILDVGGVVQSVSIDEA 460
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+D+TD LD A S +G+ S+ ++ W + AD
Sbjct: 461 LIDVTDIV-----------LD-----AAGSSGIGI-------SEGSI--WREQQKADE-- 493
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I + LR +V K+T+ S GI N +LAK+A KPA Q + V +L
Sbjct: 494 --------IASNLRAEVKKKTDCHVSVGIGGNILLAKIALRKAKPAGQYQIRPEEVLDIL 545
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
L ++ + + +G L+ E+GV V DL + S+++L G TG LW ARGI
Sbjct: 546 GDLEVEDLPGVAYSIGGKLE-EIGVKLVKDLRQTSKERLVTVLGPKTGEKLWEYARGIDR 604
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
EV + + KS + ++ G R + + ++ LC+EL RL ++ + K + +
Sbjct: 605 TEVGQQPVRKSVSADVNW-GIRFVNQ-EEAEGFVRNLCQELERRLLNEGVRGKHLTMRIL 662
Query: 301 LHA 303
A
Sbjct: 663 RRA 665
>gi|323341493|ref|ZP_08081734.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|417974490|ref|ZP_12615308.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|323091104|gb|EFZ33735.1| DNA-directed DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
gi|346329151|gb|EGX97452.1| DNA polymerase IV [Lactobacillus ruminis ATCC 25644]
Length = 366
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 103/261 (39%), Gaps = 62/261 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M +EA +CP + V VP D YR E+ I + E + DE
Sbjct: 57 VHSAMNANEALNLCP--DAVFVP-----PDFKKYRRVSKEIHEIFHEYTDKIEPIAFDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LGL+S
Sbjct: 110 YLDVTECK------------------------LGLKS----------------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L
Sbjct: 123 -----ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
L I+K + +G K + +ELGV DL SE L +G G + + RGI
Sbjct: 178 LPLKIEKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDD 235
Query: 241 EEVQARLLPKSHGSGKSFPGP 261
EV+ + KS G ++F P
Sbjct: 236 REVEWQRERKSFGVERTFNMP 256
>gi|168206793|ref|ZP_02632798.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
gi|170661821|gb|EDT14504.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
Length = 359
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K
Sbjct: 124 LMALEIKARIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L+++ E ++E LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIEEMIEILDKIAERVNESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|357975695|ref|ZP_09139666.1| DNA-directed DNA polymerase [Sphingomonas sp. KC8]
Length = 361
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
E+R ++L ET T SAGI++NK LAK+AS NKP Q + + ++ LP+ + +
Sbjct: 129 EIRARILAETGLTASAGISYNKFLAKIASDQNKPNGQCVITPAQGAAFIEHLPVGRFHGV 188
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L N LG+ T DL + LQ+ +G G W I+RGI V KS
Sbjct: 189 GPKTAEKL-NRLGIFTGADLRRQELGWLQQHFG-KAGHWYHAISRGIDERAVVPDRPRKS 246
Query: 252 HGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
GS ++ L T A+V+ + + +E+
Sbjct: 247 SGSETTY--SHDLTTPAAVEDGVRAMADEV 274
>gi|336066429|ref|YP_004561287.1| DNA polymerase IV [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334296375|dbj|BAK32246.1| DNA polymerase IV [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 406
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 116 ADHRDKLLACGVL--IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D D LL G I TE+R ++ E T S G++ NK+ AKL S +NKP T +
Sbjct: 110 VDISDSLLLFGKPGDIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILME 169
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
S VK ++ LP++ + +G SL N++G+ T+GDL E++L G G+ L +
Sbjct: 170 SHVKSMIWPLPVQDLLYVGPSTQKSL-NKMGIRTIGDLACADENQLHTHIG-KMGSLLKS 227
Query: 234 IARGISGEEVQARLLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
A G EV P KS G+G + P+ L ++ V+ L L E +S R C ++E+
Sbjct: 228 FANGDDTSEVNPHTDPAKSVGNGMT--TPQDLVSIEEVRRVLFVLAESVSSR-CRNIEK 283
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V +D LP+ + GK+ ELG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPVGSFHGV-GKVTAQKMKELGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 234 IARGISGEEVQARLLPKSHGSGKSF 258
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E+R ++ + T SAGI++NK LAK+AS +NKP Q + + + ++++P+KK
Sbjct: 138 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQAFVEAVPVKKF 197
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + LG+ T DL +++ L E +G +G + + IARGI EV+ +
Sbjct: 198 HGVGPATAEKM-HRLGIETGADLKGKTQEFLVEHFG-KSGPYFYGIARGIDNREVKPDRV 255
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 256 RKSVGAEDTF 265
>gi|161504583|ref|YP_001571695.1| DNA polymerase IV [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189027678|sp|A9MNS1.1|DPO4_SALAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160865930|gb|ABX22553.1| hypothetical protein SARI_02697 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 351
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A V I +R E S+DE
Sbjct: 53 VRSAMPTAMALKLCPHLTLLP-----GRFD--AYKEASRHVRDIFSRYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD+TD TP H G
Sbjct: 106 WLDVTD--------TP--------------HCYG-------------------------- 117
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS +NKP Q + + V L
Sbjct: 118 ----SATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ + L + +G G LW ++GI
Sbjct: 174 KTLPLAKIPGV-GKVSAAKLESMGLITCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + W + CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIERLYPELERR 273
>gi|399021125|ref|ZP_10723244.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
gi|398093109|gb|EJL83499.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
Length = 241
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 141 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 200
T +CS GIA NK+LAK+ S + KP T + V + LP +K+ +G K L
Sbjct: 5 TNLSCSIGIAPNKLLAKICSDLEKPNGLTILTMDDVPTRIWPLPARKINGIGPKAAEKL- 63
Query: 201 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 260
LG+ TVGDL + LQE +G + WL N+A+GI V PKS +F
Sbjct: 64 TALGIVTVGDLARADAGLLQEHFGRSYSAWLGNVAQGIDDRPVSTSSEPKSISRETTF-- 121
Query: 261 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
R L + L+ + L ER+ DL + + T+ +
Sbjct: 122 ERDLHARHD-REKLSGIFTALCERVADDLHRKGYLGRTIGI 161
>gi|323342769|ref|ZP_08083001.1| DNA polymerase IV [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463881|gb|EFY09075.1| DNA polymerase IV [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 406
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 116 ADHRDKLLACGVL--IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D D LL G I TE+R ++ E T S G++ NK+ AKL S +NKP T +
Sbjct: 110 VDISDSLLLFGKPGDIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDGLTILME 169
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
S VK ++ LP++ + +G SL N++G+ T+GDL E++L G G+ L +
Sbjct: 170 SHVKSMIWPLPVQDLLYVGPSTQKSL-NKMGIRTIGDLACADENQLHTHIG-KMGSLLKS 227
Query: 234 IARGISGEEVQARLLP-KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
A G EV P KS G+G + P+ L ++ V+ L L E +S R C ++E+
Sbjct: 228 FANGDDTSEVNPHTDPAKSVGNGMT--TPQDLVSIEEVRRVLFVLAESVSSR-CRNIEK 283
>gi|417324194|ref|ZP_12110519.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353579640|gb|EHC41127.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
Length = 297
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARGI V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+ + + + +RI HT+ L
Sbjct: 242 VQSISSEDTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 146/359 (40%), Gaps = 77/359 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M G A ++CPQ LV VP Y +++ S+L + S+DE Y
Sbjct: 138 VRSAMPGFIALKLCPQ--LVIVP-----PRFKRYCQVSNQIASLLYKFDSRAHMSMDEAY 190
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+D+T E LK+
Sbjct: 191 IDIT--------------------EYLKTQ------------------------------ 200
Query: 122 LLACGVL--IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP--FSSVK 177
GV+ +V+++R + + T TCSAG+A N M+AK+A+ +NKP QT V ++
Sbjct: 201 ---GGVVEDVVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQPDMVCIQ 257
Query: 178 GLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 237
L+ L ++K+ + G++ L + L + + D++ L T +L A G
Sbjct: 258 NFLNPLSVRKIPGV-GRVTEKLLSSLNIFCIQDIIS-HRSVLFHCMRRKTFEFLLQSALG 315
Query: 238 ISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
I+ + S K R K +S++ L ++CE +S+ L DLE A
Sbjct: 316 IAPAFIC------ESESRKGMSRERTFKPTSSLEE-LRKICESVSKLLADDLEAEDMYAK 368
Query: 298 TLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 356
TLTL K SD R + +K C Y +I E+ + L + + GV+ G
Sbjct: 369 TLTLK---IKCSDFSVRTRAVTK-CFFIYRYEQILENAWKLLLKEMPIEIRLLGVRANG 423
>gi|417388496|ref|ZP_12152607.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353625495|gb|EHC74281.1| DNA polymerase 4, partial [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 306
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|168240052|ref|ZP_02664984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340115|gb|EDZ26879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 108/252 (42%), Gaps = 21/252 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIAHT-LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 348
E+ I L + K +D ++ PL +ED + E G
Sbjct: 271 ERRLAIVKPDLLIARQGVKLKFNDFQQTTQEHVWPLLN-----KEDLITTARKTWDERRG 325
Query: 349 SFGVKTQGSHYS 360
GV+ G H +
Sbjct: 326 ERGVRLVGLHVT 337
>gi|417450345|ref|ZP_12162896.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353637039|gb|EHC82955.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
Length = 343
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 98 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 154
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 155 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 212
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 213 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 262
Query: 290 EQNKRIA 296
E+ I
Sbjct: 263 ERRLAIV 269
>gi|449937528|ref|ZP_21804619.1| DNA polymerase IV [Streptococcus mutans 2ST1]
gi|450155496|ref|ZP_21878262.1| DNA polymerase IV [Streptococcus mutans 21]
gi|449164183|gb|EMB67255.1| DNA polymerase IV [Streptococcus mutans 2ST1]
gi|449237157|gb|EMC36039.1| DNA polymerase IV [Streptococcus mutans 21]
Length = 370
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + + + YR G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFI-------RGNHTKYRQIGLQVREIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ +K +K
Sbjct: 121 DVTE------------------------------------NKLNIK-------------- 130
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + +E TCSAG+++NK LAKLAS +KP T + +G L +
Sbjct: 131 --SAVKIAKLIQRDIWEEFHLTCSAGVSYNKFLAKLASDYDKPHGLTVILPQDAEGFLAT 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L + L + T DL + SE L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKKSVEKL-HALHIFTGKDLQQVSEMTLIDLFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKNDRIRKSIGSERTY 262
>gi|417536912|ref|ZP_12189937.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353669430|gb|EHD06335.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 300
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|227891160|ref|ZP_04008965.1| DNA polymerase IV [Lactobacillus salivarius ATCC 11741]
gi|227867034|gb|EEJ74455.1| DNA polymerase IV [Lactobacillus salivarius ATCC 11741]
Length = 357
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 64/281 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M +A + CP + + P D + YR S++ +I + E ++DE YL
Sbjct: 59 SAMSAQKALDKCPH-AIFKTP------DFAKYRRVSSQIHTIFHEYTDKIENVALDEAYL 111
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S E CR
Sbjct: 112 DITENK------------------------LGIKS---------AVEVACR--------- 129
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ ++ +T+ TCS G+++NK LAKLAS +KP T V V+ L +
Sbjct: 130 ----------IQREIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFN 179
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
+PIKK + +G K + E G+ DL E L +G G L+ RGI
Sbjct: 180 MPIKKFRGVGKKTLPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRP 237
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 283
V+ + KS G ++F P LKTV V L + +L +
Sbjct: 238 VEWKRERKSVGKERTFDQP--LKTVEEVDSQLRLIATKLVD 276
>gi|204926676|ref|ZP_03217878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|452121423|ref|YP_007471671.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204323341|gb|EDZ08536.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|451910427|gb|AGF82233.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|123443410|ref|YP_001007383.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420257437|ref|ZP_14760195.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|189044619|sp|A1JNY3.1|DPO4_YERE8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122090371|emb|CAL13239.1| DNA-damage-inducible protein P [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|404515086|gb|EKA28863.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 352
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|299066596|emb|CBJ37786.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CMR15]
Length = 362
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVS 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D H K + I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 115 LDVTHNLKGMEIATEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ +++LP+KK +G + + LG+ T L + S + L E +G +G + +
Sbjct: 175 KNGPAFVEALPVKKFHGVGPATAERM-HRLGIDTGASLKEKSLEFLVEHFG-KSGPYFYG 232
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
IARGI +V+ + KS G+ +F + L T + L L E++ + E N
Sbjct: 233 IARGIDERQVKPNRVRKSVGAEDTF--SQDLHTFEPAREGLQPLI----EKVWAYCEANG 286
Query: 294 RIAHTLTL 301
A T+TL
Sbjct: 287 IGAKTVTL 294
>gi|443309912|ref|ZP_21039589.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
gi|442780033|gb|ELR90249.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
Length = 326
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +++ +L ET T SAG++ NK LAK+ASGMNKP T + + +LPI+K
Sbjct: 93 IARQIKAAILAETSLTASAGVSVNKFLAKMASGMNKPNGLTVILPEHAVDFVAALPIEKF 152
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G T + N LG+ T DL ++S+ L +G G + + IAR V+ +
Sbjct: 153 HGIGEVTATKMNN-LGIHTGIDLKQYSQADLVRHFG-KVGHFYYLIARAEDNRIVEPNRI 210
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ SF K + ++ L +L E +++ L LE + + T+TL
Sbjct: 211 RKSIGAETSFT-----KDLDELKIMLLEL-ENIAQTLQHRLENYQALGRTITL 257
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Query: 120 DKL-LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 178
DKL + + I E++ + E T SAG++ NK +AK+AS M+KP T + S ++
Sbjct: 121 DKLGIGSAIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSKIER 180
Query: 179 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 238
++ LP++K + GK+ G+ DL K +E +L +G +G + + I RGI
Sbjct: 181 FIEQLPVEKFHGV-GKVTAEKMKIRGLHKGADLKKLTEGELVHLFG-KSGHFFYKIVRGI 238
Query: 239 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 298
VQA KS G+ +F L T + +LC +++ +C+ +EQ++ T
Sbjct: 239 DHRPVQANQETKSIGAEDTFSEDLELLTEMN-----EELC-KIAGTVCNRMEQHRLYGRT 292
Query: 299 LTLHASAFKSSDSDSRKKFPSKSCPLR 325
LT+ K SD + S S P+R
Sbjct: 293 LTI---KIKFSDFKQITRSRSFSEPIR 316
>gi|339624645|ref|ZP_08660434.1| nucleotidyltransferase/DNA polymerase for DNA repair
[Fructobacillus fructosus KCTC 3544]
Length = 364
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 77/360 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EAK CP + V D YR ++ I E ++DE
Sbjct: 65 VHSAMGSIEAKRACPNLVFV-------APDFEKYRAISGQIHQIFHEFTDMIEPVALDEA 117
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T A M A T
Sbjct: 118 YLDVT--ANKMAAPT--------------------------------------------- 130
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ +LR ++ +ET+ TCS G+++NK+LAKL S +KP T +P + +
Sbjct: 131 --------LAAQLRHRIWQETQLTCSVGVSYNKVLAKLGSEHHKPNGVTVIPHELAQDFV 182
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LPIK + +G K + ++GVT DL S D+L+ +G + G L+ AR
Sbjct: 183 LNLPIKDFRGVGKKTLEKFE-KMGVTDGRDLYAMSLDELRVQFG-SFGDVLYWQARATHF 240
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ R + +S G +F AL + V+ + L+E++ ++++ K + TLT
Sbjct: 241 SPVKDRSVRQSVGKESTF--ELALHDRSEVE----MTFKTLAEKVVLNMKKKKLLGRTLT 294
Query: 301 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 360
+ + D ++ K +++ P A + +F + +F ++ G +S
Sbjct: 295 V---KIRDDDFKTQTKGMTQAVPFELDAAFLARQAMLIFDEA---YPDNFSIRLLGLTFS 348
>gi|294658426|ref|XP_460761.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
gi|202953120|emb|CAG89102.2| DEHA2F09196p [Debaryomyces hansenii CBS767]
Length = 770
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 127/325 (39%), Gaps = 57/325 (17%)
Query: 11 AKEVCPQIELVQVPV----------ARG-------KADLSSYRNAGSEVVSILARK-GRC 52
A++ CP I + V RG K L YR ++++I
Sbjct: 99 ARQKCPNIIIAHAAVFKKGDSYWSYIRGLPDRSVHKVSLDPYRRESRKIMNIFREYCDLV 158
Query: 53 ERASIDEVYLDLTDAAEAMLAETPPESLDEVDE--------------------EALKSHI 92
E+AS+DE +LD L + P+ DEV+ E +KS
Sbjct: 159 EKASVDECFLDFGRMIYYTLLQLFPDLGDEVENINSNLPSIPSTLPDSLYWVGEIIKSED 218
Query: 93 -LGLESKDGNDSKAT---VKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAG 148
+ S + D KA +++W C + G ++ E+R QV +E +T S G
Sbjct: 219 EVPRNSDNDQDLKANDPRIRDWDDVC--------MLIGSQLLYEVRQQVFEELGYTTSGG 270
Query: 149 IAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTV 208
+ NK++AK+A G KP QT + S+ L + + +GGK G + L V
Sbjct: 271 LGKNKIIAKIAGGFLKPDNQTIIRTCSMNNFLKNFQLIDFNGMGGKTGDVIMQRLEVPPD 330
Query: 209 GDLL-----KFSEDKLQESYGFN--TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 261
+ + FS + +Q+ + + + + RG +E+ R KS S K+F
Sbjct: 331 VNSISFIRNNFSLEDIQKEFANDPPLAQKTYQMVRGNYRQELSLRTEIKSMMSRKNFLSK 390
Query: 262 RALKTVASVQHWLNQLCEELSERLC 286
+ + W+ +L RL
Sbjct: 391 NPVNNIHDAYDWIKVFAGDLYGRLI 415
>gi|239638048|ref|ZP_04679007.1| DNA polymerase IV [Staphylococcus warneri L37603]
gi|239596331|gb|EEQ78869.1| DNA polymerase IV [Staphylococcus warneri L37603]
Length = 356
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++TE T SAG+++NK LAKLASGMNKP T + +++V +L L I +
Sbjct: 124 IANFIRRDILEQTELTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHDILMGLDIGEF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ + DL E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASEKVMHDNQIFNGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKSTRI 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>gi|294782398|ref|ZP_06747724.1| DNA polymerase IV (Pol IV) [Fusobacterium sp. 1_1_41FAA]
gi|294481039|gb|EFG28814.1| DNA polymerase IV (Pol IV) [Fusobacterium sp. 1_1_41FAA]
Length = 352
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 141/328 (42%), Gaps = 71/328 (21%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYL 62
S+M+ +AK +CP+ L+ +PV D Y +E+ + IL + E + DE Y+
Sbjct: 51 SAMKVSDAKLLCPK--LIAIPV-----DKKEYIRISNEIHNLILKITNKVEFIATDEGYI 103
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
DLT + PE+ + ALK K +KE
Sbjct: 104 DLTGIVK-------PENKKQF---ALKF-------------KERIKEL------------ 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
T TCS GI NK+ AK+AS +NKP F + K ++
Sbjct: 129 ------------------TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKDFIEY 168
Query: 183 LPIKKMKQL---GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+ KK+K + G K L+++ + V D+ K+S D L + YG + G L+ RGI+
Sbjct: 169 ISDKKIKIIPGVGRKFSEILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGIN 227
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+EV+ S G+ +++ P L+T + ++ N L E +RL + ++ I T+
Sbjct: 228 HDEVEYEREIHSIGNEETYSIP--LQTTSELEREFNSLFEYTYQRLIKNNVFSQSI--TV 283
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYG 327
+ +FK+ + KF +K Y
Sbjct: 284 KIRYISFKTYTKSKKLKFATKDKDFLYN 311
>gi|365848138|ref|ZP_09388617.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
gi|364571339|gb|EHM48930.1| DNA polymerase IV [Yokenella regensburgei ATCC 43003]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + I +R E S+DE
Sbjct: 53 VRSAMPTAMALKLCPHLTLLP-----GRFD--AYKEASVHIREIFSRYTSLIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD++D+ H LG
Sbjct: 106 YLDVSDSV----------------------HCLG-------------------------- 117
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
L+ E+R + E + T SAG+A K LAK+AS +NKP Q + + V L
Sbjct: 118 ----SATLMAQEIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T D+ K L + +G G LW ++GI
Sbjct: 174 KTLPLAKIPGV-GKVSAAKLESMGLRTCEDVQKSDLAMLLKRFG-KFGRVLWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
E+ + L KS G ++ + + W CE + ERL +LE+
Sbjct: 232 REISSERLRKSVGVERTL--------IEDIHDWAE--CEAIIERLYPELERR 273
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +R ++ ++T T SAG+A NK LAK+AS KP Q +P V L +LP +K+
Sbjct: 154 VAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVAEFLHTLPPEKI 213
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
+G +Q+ LG+ TVGDLL+F +L +G G L+ +ARGI V+
Sbjct: 214 PGVGKVTRLKMQS-LGIDTVGDLLRFERGELANLFG-KWGYRLYELARGIDNRAVK 267
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
++R +V E TCS G+A K +AKLASGM KP VP + L LP+ + +
Sbjct: 141 QIRSRVAAEHGITCSVGVAKVKFVAKLASGMAKPDGMVVVPAAETLAFLHPLPVSALWGV 200
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G + L+ LG+ T+ D+ F ++L++S G G L+ +A G+ V A KS
Sbjct: 201 GARTEEHLRR-LGLATIADVAAFPPERLKKSLGTAAGEHLYRLAHGVDERSVVAESAEKS 259
Query: 252 HGSGKSF 258
G+ +F
Sbjct: 260 IGAEHTF 266
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 19/255 (7%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I E++ +V T T S GI++NK LAKLAS NKP + V +L LP+ K+
Sbjct: 119 IALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKV 178
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L++ +G+ TV DLLK ++ L E +G TG ++N RGI V+
Sbjct: 179 HGIGEKSAEKLRS-IGIETVEDLLKLPQENLIELFG-KTGVEIYNRIRGIDERPVETMRE 236
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 308
KS G K+ L+ + L Q +E SE + +L + + T+T+ K+
Sbjct: 237 IKSIGKEKT------LEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTV---KIKT 287
Query: 309 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRIT 365
+D K + +R+ ED + + + L E+ V+ G S+ S +
Sbjct: 288 ADFAVHTKSKTVDKYIRFS-----EDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYE 342
Query: 366 ALSVSASKIVPVLSG 380
LS ++V V+
Sbjct: 343 QLSFLDKRLVKVIKA 357
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 131 TELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 190
E+R ++L+ET T SAGI++NK LAKLAS KP Q VP + ++ LP+K+
Sbjct: 128 VEIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGEAFVEILPVKRFYG 187
Query: 191 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 250
+ G + + + LG+ T DL + S LQ+ +G +G W + I+RG V K
Sbjct: 188 V-GPVTAAKMSRLGIETGEDLRRQSLALLQQHFG-KSGPWYYAISRGEDHRAVNPNRERK 245
Query: 251 SHGSGKSF 258
S GS +F
Sbjct: 246 SSGSETTF 253
>gi|450007804|ref|ZP_21827928.1| DNA polymerase IV [Streptococcus mutans NMT4863]
gi|449185947|gb|EMB87806.1| DNA polymerase IV [Streptococcus mutans NMT4863]
Length = 370
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + + + YR G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFI-------RGNHTKYRQIGLQVREIFRRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ +K +K
Sbjct: 121 DVTE------------------------------------NKLNIK-------------- 130
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + +E TCSAG+++NK LAKLAS +KP T + V+G L +
Sbjct: 131 --SAVKIAKLIQRDIWEEFHLTCSAGVSYNKFLAKLASDYDKPHGLTVILPQDVEGFLAT 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L + L + T DL + E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFYGVGKKSVEKL-HALHIFTGKDLQQVPEMTLIDLFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKNDRIRKSIGSERTY 262
>gi|16759308|ref|NP_454925.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16763696|ref|NP_459311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29142919|ref|NP_806261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|161615517|ref|YP_001589482.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167553101|ref|ZP_02346851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167993331|ref|ZP_02574426.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|197263932|ref|ZP_03164006.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|213162131|ref|ZP_03347841.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425140|ref|ZP_03357890.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213649644|ref|ZP_03379697.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|374979809|ref|ZP_09721141.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378443760|ref|YP_005231392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448629|ref|YP_005235988.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698281|ref|YP_005180238.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378960717|ref|YP_005218203.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|378982854|ref|YP_005246009.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378987715|ref|YP_005250879.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699532|ref|YP_005241260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383495126|ref|YP_005395815.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|416424584|ref|ZP_11691765.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430856|ref|ZP_11695200.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439979|ref|ZP_11700560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416444663|ref|ZP_11703896.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416453868|ref|ZP_11709942.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458465|ref|ZP_11712984.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416464995|ref|ZP_11716575.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416477004|ref|ZP_11721348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416484247|ref|ZP_11724043.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416501678|ref|ZP_11732268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416542219|ref|ZP_11751389.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416576567|ref|ZP_11769149.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416583841|ref|ZP_11773597.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416595190|ref|ZP_11781004.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596485|ref|ZP_11781377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416605634|ref|ZP_11787066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416610348|ref|ZP_11790020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416620916|ref|ZP_11796019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416632850|ref|ZP_11801564.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416639881|ref|ZP_11804795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416648380|ref|ZP_11809025.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416661634|ref|ZP_11815626.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416671044|ref|ZP_11820533.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416673706|ref|ZP_11821029.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416697864|ref|ZP_11828234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416706698|ref|ZP_11831887.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416713112|ref|ZP_11836754.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416719557|ref|ZP_11841413.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416723694|ref|ZP_11844360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416734275|ref|ZP_11850930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416740195|ref|ZP_11854283.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416745392|ref|ZP_11857324.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416759363|ref|ZP_11864224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416764507|ref|ZP_11868111.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416766916|ref|ZP_11869532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418485151|ref|ZP_13054135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418490188|ref|ZP_13056740.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493277|ref|ZP_13059745.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497978|ref|ZP_13064393.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504273|ref|ZP_13070631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418508095|ref|ZP_13074403.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418514207|ref|ZP_13080418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|418525494|ref|ZP_13091474.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|421884459|ref|ZP_16315674.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|422024443|ref|ZP_16370923.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029466|ref|ZP_16375725.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427545521|ref|ZP_18926234.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427561638|ref|ZP_18930997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427600223|ref|ZP_18940314.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427602709|ref|ZP_18940599.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427627117|ref|ZP_18945508.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427650396|ref|ZP_18950263.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659669|ref|ZP_18955216.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664787|ref|ZP_18959964.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427695319|ref|ZP_18964870.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|437839681|ref|ZP_20846302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|54036996|sp|P63990.1|DPO4_SALTI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040957|sp|P63989.1|DPO4_SALTY RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027679|sp|A9MY13.1|DPO4_SALPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|25300621|pir||AG0542 hypothetical protein DinP (DNA damage-inducible protein) STY0358
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16418815|gb|AAL19270.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501599|emb|CAD08783.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138551|gb|AAO70121.1| hypothetical protein DinP [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161364881|gb|ABX68649.1| hypothetical protein SPAB_03289 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197242187|gb|EDY24807.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|205322378|gb|EDZ10217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205328613|gb|EDZ15377.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|261245539|emb|CBG23333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992007|gb|ACY86892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156929|emb|CBW16410.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911282|dbj|BAJ35256.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224974|gb|EFX50035.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322614606|gb|EFY11535.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620125|gb|EFY16997.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623419|gb|EFY20258.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629283|gb|EFY26062.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632003|gb|EFY28757.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637259|gb|EFY33961.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642456|gb|EFY39058.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322646290|gb|EFY42804.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652441|gb|EFY48795.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653397|gb|EFY49730.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660455|gb|EFY56691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664607|gb|EFY60800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669340|gb|EFY65490.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670886|gb|EFY67019.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678875|gb|EFY74930.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681904|gb|EFY77929.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322688030|gb|EFY83996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323128631|gb|ADX16061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|323194385|gb|EFZ79580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197800|gb|EFZ82932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203404|gb|EFZ88429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323210380|gb|EFZ95272.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214622|gb|EFZ99373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223178|gb|EGA07521.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323224851|gb|EGA09114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230055|gb|EGA14175.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233793|gb|EGA17882.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238513|gb|EGA22571.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244201|gb|EGA28210.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246361|gb|EGA30344.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251987|gb|EGA35850.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257984|gb|EGA41663.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259919|gb|EGA43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265067|gb|EGA48566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272630|gb|EGA56037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|332987262|gb|AEF06245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|366056129|gb|EHN20455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366065452|gb|EHN29642.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366067037|gb|EHN31193.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366071115|gb|EHN35215.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366073755|gb|EHN37819.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366080027|gb|EHN44008.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366080401|gb|EHN44373.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366829374|gb|EHN56250.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372206263|gb|EHP19767.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|374354589|gb|AEZ46350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|379986173|emb|CCF87947.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|380461947|gb|AFD57350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|414023614|gb|EKT07037.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414023926|gb|EKT07336.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414025152|gb|EKT08487.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414025463|gb|EKT08787.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414037582|gb|EKT20346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414042252|gb|EKT24790.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414051986|gb|EKT34061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053392|gb|EKT35392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414057905|gb|EKT39634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414061945|gb|EKT43317.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067531|gb|EKT47871.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|435297410|gb|ELO73693.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 253
>gi|125774807|ref|XP_001358655.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
gi|54638394|gb|EAL27796.1| GA20473 [Drosophila pseudoobscura pseudoobscura]
Length = 761
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 138/337 (40%), Gaps = 47/337 (13%)
Query: 10 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEVYLD---LT 65
EA+ +CP + LV DL+ YR ++ +L E+ DE ++D L
Sbjct: 70 EAQRLCPDLVLV------NGEDLAPYRLMSQKIFDLLLNYTPMVEKLGFDENFMDVSALV 123
Query: 66 DAAEAMLAET---PPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D +A AE PP +G D T C C R
Sbjct: 124 DLRQAHAAEAQQRPP---------------VGHTYPDDGTPLTT-----CSCGCAQR--- 160
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
LA G I E+R ++ TC AGIA+NK+LAKL +KP QQT + + + +
Sbjct: 161 LAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHKPNQQTVLVSTYAEQFMRE 220
Query: 183 L-PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
L IK++ +G K L E G++TV L + +++ +GF T T L ++A G
Sbjct: 221 LHDIKRVTGIGQK-TQCLLLEAGMSTVEQLQQCDMVVMRKKFGFETATKLRDLAFGRDSS 279
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ PK+ G + + + V+ L L E++ D I L
Sbjct: 280 TVRPTGKPKTIGMEDAC---KPISVCTDVEERFRMLLIRLIEQVAEDGRIPVAIKVVLRK 336
Query: 302 HASAFKSSDSDSRKK------FPSKSCPLRYGTAKIQ 332
S KSS ++++ F + C G +K+Q
Sbjct: 337 FDSQKKSSHRETKQANILPSLFKTSMCAGEMGVSKVQ 373
>gi|194449490|ref|YP_002044297.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|386590192|ref|YP_006086592.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|419727415|ref|ZP_14254383.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419733717|ref|ZP_14260612.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419739357|ref|ZP_14266105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745492|ref|ZP_14272124.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419750239|ref|ZP_14276704.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421572746|ref|ZP_16018392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421577654|ref|ZP_16023242.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421582244|ref|ZP_16027785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421584356|ref|ZP_16029864.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|194407794|gb|ACF68013.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|381298604|gb|EIC39680.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381298904|gb|EIC39978.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381300997|gb|EIC42053.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381305571|gb|EIC46481.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381307432|gb|EIC48288.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383797236|gb|AFH44318.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|402515681|gb|EJW23095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402516242|gb|EJW23655.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402516572|gb|EJW23983.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402530874|gb|EJW38087.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-IGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 140/368 (38%), Gaps = 93/368 (25%)
Query: 11 AKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRC-ERASIDEVYLDLTDAAE 69
AK CP L+ VP + Y EV IL E+ SIDE YLDL++
Sbjct: 63 AKNSCPN--LIIVP-----GRMQRYLEKSKEVFDILHSYTEILEKVSIDEAYLDLSN--- 112
Query: 70 AMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLACGVLI 129
SL+ VD +
Sbjct: 113 ---------SLNSVD--------------------------------------------V 119
Query: 130 VTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMK 189
+++ +V T T S GI++NK LAKLAS NKP + + V +L L IKK+
Sbjct: 120 AKQIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISKNDVPDILLPLDIKKVH 179
Query: 190 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 249
LG K L+N +G+ TV D+ + + L++ +G G ++ RGI V ++
Sbjct: 180 GLGRKSQEKLRN-IGINTVEDMFQLDLEFLEKIFG-KMGYEIYQRIRGIDNRAVNSQRSR 237
Query: 250 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 309
KS G ++FP R + LN+L + S L DL TLTL F
Sbjct: 238 KSLGVERTFPDTRDKYIL------LNRLI-QYSVELSKDLSSKNLGFKTLTLKLKTFDFK 290
Query: 310 DSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV 369
+ K + + + D + L F +HY G ++ + +
Sbjct: 291 INTHSKTY-----------SHVINDKQEIENLALELF---------NTHYKGEKLRLMGI 330
Query: 370 SASKIVPV 377
SAS + P+
Sbjct: 331 SASNLQPL 338
>gi|168232268|ref|ZP_02657326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168238581|ref|ZP_02663639.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194468929|ref|ZP_03074913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194735550|ref|YP_002113339.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250353|ref|YP_002145295.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|375000050|ref|ZP_09724390.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|416526532|ref|ZP_11742437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536260|ref|ZP_11748327.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416552950|ref|ZP_11757412.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|440770406|ref|ZP_20949356.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440771964|ref|ZP_20950874.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|194455293|gb|EDX44132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194711052|gb|ACF90273.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197214056|gb|ACH51453.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197288572|gb|EDY27949.1| DNA polymerase IV (Pol IV) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|205333456|gb|EDZ20220.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|353074738|gb|EHB40498.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363557584|gb|EHL41789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363563486|gb|EHL47560.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565366|gb|EHL49402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|436411550|gb|ELP09499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436420192|gb|ELP18060.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
Length = 351
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|125656402|gb|ABN48549.1| polymerase ATREV1-651 [Arabidopsis thaliana]
Length = 651
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 63/254 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V + M AK++CPQ LV VP + +Y + IL R R +A S DE
Sbjct: 426 VKAGMFVRHAKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEA 478
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++D L +V+ E L S I
Sbjct: 479 FLDVSD-------------LSDVETEVLASTI---------------------------- 497
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ L
Sbjct: 498 -------------RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G L L + + T G L S+D LQ+ +G TG LW+ +RG+
Sbjct: 545 DQLPVGTLPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDL 603
Query: 241 EEVQARLLPKSHGS 254
V A KS G+
Sbjct: 604 RSVTAVQESKSIGA 617
>gi|282889601|ref|ZP_06298142.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500524|gb|EFB42802.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 271
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
+L+ VLK T TCS GIA NK++AK+AS KP +P L +LPI + +
Sbjct: 40 KLKEAVLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAIPGI 99
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RLLPK 250
G K SL ++ + T+ DL K D L E YG G + + A GI V PK
Sbjct: 100 GSKTEKSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEYFPK 157
Query: 251 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKS 308
S G+ +F A T+ L + EL ++ C L+ Q + +L L S F++
Sbjct: 158 SIGAETTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 211
>gi|406577817|ref|ZP_11053404.1| DNA polymerase IV [Streptococcus sp. GMD6S]
gi|404459467|gb|EKA05825.1| DNA polymerase IV [Streptococcus sp. GMD6S]
Length = 353
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 132/340 (38%), Gaps = 72/340 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + Y+ G E+ +I R E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAVFIS-------GNYEKYKTVGLEIRAIFKRYTDLIEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG++S
Sbjct: 119 YLDVTENK------------------------LGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V I ++ + +E + T SAG+++NK LAK+AS KP T + + L
Sbjct: 132 -----AVKIARLIQQDIWRELQLTASAGVSYNKFLAKMASDYQKPHGLTVILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ I K +G K L +E+G+ T DLL SE L + +G G L+ ARGI
Sbjct: 187 KQMDIAKFHGVGKKTVKRL-HEMGIYTGADLLDVSEVTLIDRFG-RLGYDLYRKARGIHN 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V++ + KS G K++ + V+ + + LSE++ +L + +
Sbjct: 245 SPVKSNRIRKSIGKEKTYG------KILQVEEDIKKELTLLSEKVALNLSTQDKAGKIII 298
Query: 301 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQ 340
L S RK P + T++I + L++
Sbjct: 299 LKIRYADFSTLTRRKSLPQATQD----TSQISQTALQLYE 334
>gi|418791236|ref|ZP_13346999.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418793736|ref|ZP_13349462.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418799685|ref|ZP_13355351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418869364|ref|ZP_13423800.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392755325|gb|EJA12235.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392763416|gb|EJA20223.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392764003|gb|EJA20809.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392836512|gb|EJA92094.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
Length = 351
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
E+R ++L+ T T SAG+++NK LAKLAS KP Q VP + + +LPI + +
Sbjct: 129 EIRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGEAFVQTLPIGRFHGV 188
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G ++ LGV T DL + S LQ+ +G +G W + IARG V + KS
Sbjct: 189 GAVTEAKMKR-LGVHTGEDLHRQSLAFLQQHFG-RSGPWYYAIARGEDDRRVNPDRVRKS 246
Query: 252 HGSGKSF 258
GS +F
Sbjct: 247 SGSETTF 253
>gi|282882761|ref|ZP_06291368.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
gi|281297422|gb|EFA89911.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
Length = 344
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 22/244 (9%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E++ +LK+T + S G++ NK LAKLAS NKP + V +L L I+K+
Sbjct: 117 FLKEMQDNILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIISKDEVPDILMDLDIRKI 176
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L+N LG+ V DL ED L +G +G ++ RGI EVQ ++
Sbjct: 177 HGIGKKSEDKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIK 234
Query: 249 PKSHGSGKS-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
KS G+ + FP + +++++ E+S+ DL + + TLT+
Sbjct: 235 RKSLGTENTFFPTDNRI----DLENYIKIFSGEVSQ----DLIKRNLLGFTLTIKL---- 282
Query: 308 SSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRI 364
+ + K +KS YG K +ED + REF ++ G S+ S +I
Sbjct: 283 ---KNDKFKIRTKSRTYEYGLYK-KEDIYREGLILFREFYNDDKIRLIGLTVSNLSDLKI 338
Query: 365 TALS 368
L+
Sbjct: 339 HQLT 342
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D H K + I E+R ++ + T SAGI++NK LAK+AS +NKP Q +
Sbjct: 115 LDVTHNLKGMEIATEIALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITP 174
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
+ +++LP+KK +G + + LG+ T L + S + L E +G +G + +
Sbjct: 175 KNGPAFVEALPVKKFHGVGPATAERM-HRLGIDTGASLKEKSLEFLVEHFG-KSGPYFYG 232
Query: 234 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 293
IARGI +V+ + KS G+ +F + L T + L L E++ + E N
Sbjct: 233 IARGIDERQVKPNRVRKSVGAEDTF--SQDLHTFEPAREGLQPLI----EKVWAYCEANG 286
Query: 294 RIAHTLTL 301
A T+TL
Sbjct: 287 IGAKTVTL 294
>gi|325955402|ref|YP_004239062.1| DNA polymerase IV [Weeksella virosa DSM 16922]
gi|323438020|gb|ADX68484.1| DNA polymerase IV [Weeksella virosa DSM 16922]
Length = 357
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 124/307 (40%), Gaps = 80/307 (26%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V S+M AK CPQ+ V K + ++Y+ ++ I E++
Sbjct: 53 VRSAMPSAVAKRKCPQLIFV-------KGNFAAYKEVSNQ---------------IKEIF 90
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDK 121
+ TD E P SLDE D H
Sbjct: 91 AEYTDLIE-------PLSLDE-----------------------------AYLDVTHNHP 114
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
+ I E++ ++ + T+ T SAG++ NK LAK+AS KP + + ++
Sbjct: 115 NIEYATTIAKEIKQKIKETTKLTASAGVSFNKFLAKIASDYRKPDGLFVITPKMAEKFVE 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
LPI+K +G + ++ + + T DL K S +K+ +G +G + +NIAR I
Sbjct: 175 ELPIEKFYGIGKQTAQRMRM-MNIETGKDLKKLSLEKILREFG-KSGLYYYNIARAIDHR 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ-------NKR 294
EV++ + KS G+ +F LN L +EL +RL +E+ N+
Sbjct: 233 EVKSHRIRKSIGTENTFVTD------------LNDL-QELKKRLIPMIEEVWMWTVKNQT 279
Query: 295 IAHTLTL 301
T+TL
Sbjct: 280 YGRTITL 286
>gi|90962137|ref|YP_536053.1| DNA polymerase IV [Lactobacillus salivarius UCC118]
gi|301301263|ref|ZP_07207418.1| DNA polymerase IV [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821331|gb|ABD99970.1| DNA polymerase IV [Lactobacillus salivarius UCC118]
gi|300851139|gb|EFK78868.1| DNA polymerase IV [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 357
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M +A + CP + + P D + YR S++ +I + E ++DE YL
Sbjct: 59 SAMSAQKALDKCPH-AIFKTP------DFAKYRRVSSQIHTIFHEYTDKIENVALDEAYL 111
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S E CR
Sbjct: 112 DITENK------------------------LGIKS---------AVEVACR--------- 129
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ ++ +T+ TCS G+++NK LAKLAS +KP T V V+ L +
Sbjct: 130 ----------IQREIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFN 179
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
+PIKK + +G K + E G+ DL E L +G G L+ RGI
Sbjct: 180 MPIKKFRGVGKKTLPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRP 237
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
V+ + KS G ++F P LKTV V L + +L
Sbjct: 238 VEWKRERKSVGKERTFDQP--LKTVEEVDSQLRLIATKL 274
>gi|418961661|ref|ZP_13513546.1| DNA polymerase IV [Lactobacillus salivarius SMXD51]
gi|380343756|gb|EIA32104.1| DNA polymerase IV [Lactobacillus salivarius SMXD51]
Length = 357
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M +A + CP + + P D + YR S++ +I + E ++DE YL
Sbjct: 59 SAMSAQKALDKCPH-AIFKTP------DFAKYRRVSSQIHTIFHEYTDKIENVALDEAYL 111
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S E CR
Sbjct: 112 DITENK------------------------LGIKS---------AVEVACR--------- 129
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ ++ +T+ TCS G+++NK LAKLAS +KP T V V+ L +
Sbjct: 130 ----------IQREIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFN 179
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
+PIKK + +G K + E G+ DL E L +G G L+ RGI
Sbjct: 180 MPIKKFRGVGKKTLPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRP 237
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 281
V+ + KS G ++F P LKTV V L + +L
Sbjct: 238 VEWKRERKSVGKERTFDQP--LKTVEEVDSQLRLIATKL 274
>gi|70991795|ref|XP_750746.1| DNA damage repair protein Mus42 [Aspergillus fumigatus Af293]
gi|66848379|gb|EAL88708.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
Af293]
Length = 1154
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP+++++ D +Y A + S +LA G + SIDE +D+
Sbjct: 430 MKG--ALQACPELKVLPY-------DFPAYEEASKKFYSAVLAVDGVVQSVSIDEALVDI 480
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T + LE+ G+D + + + R A +
Sbjct: 481 T--------------------------LQCLEA-GGSDGRGISEGSIYREQAKADE---- 509
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I LR V T S GI N + AK+A KPA Q + SV L+ L
Sbjct: 510 ----IAQNLRESVKAATGCDVSVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLT 565
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LG L+ ELGV V D+ S +KL G TG +W ARGI EV
Sbjct: 566 VQDLPGVGYSLGAKLE-ELGVKLVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVG 624
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LCEEL RL +L + K++
Sbjct: 625 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|332160678|ref|YP_004297255.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664908|gb|ADZ41552.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862504|emb|CBX72661.1| DNA polymerase IV [Yersinia enterocolitica W22703]
Length = 352
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
LI E+R + E T SAGIA K LAK+AS +NKP Q + V L LP+
Sbjct: 119 ATLIAQEIRQAIAIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPL 178
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
K+ +G LQ ELG+ T D+ +S+ +L + +G G LW + GI EV
Sbjct: 179 SKIPGVGKVTAKRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSP 236
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 294
L KS G ++ + W + CE L E+L +LE R
Sbjct: 237 DRLRKSVGVEQTL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|299537820|ref|ZP_07051109.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|424735572|ref|ZP_18164035.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
gi|298726799|gb|EFI67385.1| DNA polymerase IV [Lysinibacillus fusiformis ZC1]
gi|422950229|gb|EKU44598.1| DNA polymerase IV [Lysinibacillus fusiformis ZB2]
Length = 412
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 63/285 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
+ ++M EAK CP EL+ +P D YR+A E+ +IL + E SIDE
Sbjct: 58 IYTTMTVHEAKRKCP--ELLLLP-----PDFQKYRHASKEMFTILRSYTPLVEPVSIDEG 110
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD V E + + H L
Sbjct: 111 YLD-------------------VTELSKERHALS-------------------------- 125
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
I E++ ++L E + CS GIA NK LAK AS M KP T + ++ L
Sbjct: 126 --------IAQEIQARILAELDLPCSIGIAPNKFLAKTASDMKKPMGITVLRIRDIEQQL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ M +G L N G+ T+GDL K E K+++ G N G L A G+
Sbjct: 178 WHREVVNMHGIGASTAKKL-NAQGIFTIGDLAKTEEFKMKQILGKN-GVRLRARANGVDQ 235
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
V + + G S P + V ++ + LC+++ ERL
Sbjct: 236 RMVDPEAIFDTKSVGNSTTLPEDVTDVRTLHKTIEGLCKKVVERL 280
>gi|159124308|gb|EDP49426.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
A1163]
Length = 1154
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 48/291 (16%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYLDL 64
M+G A + CP+++++ D +Y A + S +LA G + SIDE +D+
Sbjct: 430 MKG--ALQACPELKVLPY-------DFPAYEEASKKFYSAVLAVDGVVQSVSIDEALVDI 480
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T + LE+ G+D + + + R A +
Sbjct: 481 T--------------------------LQCLEA-GGSDGRGISEGSIYREQAKADE---- 509
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
I LR V T S GI N + AK+A KPA Q + SV L+ L
Sbjct: 510 ----IAQNLRESVKAATGCDVSVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLT 565
Query: 185 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 244
++ + +G LG L+ ELGV V D+ S +KL G TG +W ARGI EV
Sbjct: 566 VQDLPGVGYSLGAKLE-ELGVKLVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVG 624
Query: 245 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 295
+L KS + ++ G R + + + ++ LCEEL RL +L + K++
Sbjct: 625 NEVLRKSVSAEVNW-GIRFVNQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|418324714|ref|ZP_12935944.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
gi|365224987|gb|EHM66242.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
Length = 356
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 133 LRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG 192
+R + ++T+ T SAG+++NK LAKLASGMNKP T + +++V +L +L I + +G
Sbjct: 128 IRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNNLTVIDYNNVHEILMNLNIGGFRGVG 187
Query: 193 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 252
+ G+ T DL SE +L +G G L+N ARGI V++ + KS
Sbjct: 188 PTTEEKMHAN-GIYTGKDLYDKSERELIRLFG-KKGHGLYNKARGIDESPVKSERIRKSV 245
Query: 253 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
G+ ++F + + LN++ ELS + L + ++ T+T+ ++
Sbjct: 246 GTERTFA-----TDMNDDEQVLNKIW-ELSTKTAERLSRIQKSGKTVTVKIKTYR 294
>gi|417346516|ref|ZP_12126349.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417371123|ref|ZP_12141791.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353579501|gb|EHC41021.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353608986|gb|EHC62416.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
Length = 356
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|213023317|ref|ZP_03337764.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 209
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 7 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 63
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 64 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 121
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 122 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 171
Query: 290 EQNKRIA 296
E+ I
Sbjct: 172 ERRLAIV 178
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + V I E+R ++ K TE T SAG+ ++K++AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKPNGLTVVLP 168
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V +D LPI + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 234 IARGISGEEVQARLLPKSHGSGKSF 258
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 127/307 (41%), Gaps = 65/307 (21%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP++ V P + Y+ +V I R E S+DE
Sbjct: 55 VRSAMPSKRAVQLCPELVFVAPP------RFAVYKAVSRQVREIFHRYTDLIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ D++ + S
Sbjct: 109 YLDVTE-----------------DKQQIGS------------------------------ 121
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
A G I +++ + E + T SAG++ NK +AK+AS MNKP T +P V+ +
Sbjct: 122 ---AIG--IAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDKVEAFM 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+SLP+ K + GK+ N L + T DL K +E +L +G G++ + I RGI
Sbjct: 177 ESLPVNKFHGV-GKVTAEKMNTLNLFTGADLKKLTEVELVRLFG-KPGSFYYKIVRGIDD 234
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ KS + +F L ++ L++L ++ RL + K I TL
Sbjct: 235 RPVEPNRETKSISAEDTFLND--LDNPVEMKEQLDRLAAVVTNRLQQYELKGKTI--TLK 290
Query: 301 LHASAFK 307
+ S FK
Sbjct: 291 IRYSDFK 297
>gi|417355889|ref|ZP_12131585.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|417378884|ref|ZP_12147411.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417472629|ref|ZP_12168274.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417525134|ref|ZP_12184389.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353597694|gb|EHC54333.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353619144|gb|EHC69627.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353653545|gb|EHC95057.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353670162|gb|EHD06852.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
Length = 356
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 111 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 167
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 168 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 225
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 226 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 275
Query: 290 EQNKRIA 296
E+ I
Sbjct: 276 ERRLAIV 282
>gi|422022011|ref|ZP_16368520.1| DNA polymerase IV [Providencia sneebia DSM 19967]
gi|414097761|gb|EKT59414.1| DNA polymerase IV [Providencia sneebia DSM 19967]
Length = 351
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI +R Q+ KE + T SAG+A K LAK+AS MNKP Q + ++ + +LP+KK
Sbjct: 121 LIAQAIRQQIFKELQLTASAGVAPIKFLAKIASDMNKPNGQYVITPQNMDEFVRTLPLKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ +G L ++G+ T D+ + L +S G G LW I +
Sbjct: 181 IPGVGKVTAQKLL-DMGLATCSDVQHYDVVNLIKSMG-KFGQILWERCHAIDERPINPDR 238
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 296
L KS G ++ V + HW L++L +EL RL + + N+RIA
Sbjct: 239 LRKSVGVERTL--------VQDIHHWEDCIPLLDKLYDELEVRL-TKISPNRRIA 284
>gi|347525843|ref|YP_004832591.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
gi|345284802|gb|AEN78655.1| DNA polymerase IV [Lactobacillus ruminis ATCC 27782]
Length = 366
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 102/261 (39%), Gaps = 62/261 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEV 60
V S+M +EA +CP + V VP D YR E+ I + E + DE
Sbjct: 57 VHSAMNANEALNLCP--DAVFVP-----PDFKKYRQVSKEIHEIFHEYTDKVEPIAFDEA 109
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T+ LG +S
Sbjct: 110 YLDVTECK------------------------LGFKS----------------------- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+I ++ ++ ++T TCS GI++NK LAKLAS KP T V L
Sbjct: 123 -----ATIIAHRIQQEIFEKTGLTCSTGISYNKFLAKLASDYAKPVGMTLVREDEALDFL 177
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
L I+K + +G K + +ELGV DL SE L +G G + + RGI
Sbjct: 178 LPLKIEKFRGVGRKTVIKM-HELGVYNGYDLYGLSELDLIHYFG-KMGHFFYEQVRGIDD 235
Query: 241 EEVQARLLPKSHGSGKSFPGP 261
EV+ + KS G ++F P
Sbjct: 236 REVEWQRERKSFGVERTFNMP 256
>gi|325849681|ref|ZP_08170884.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480022|gb|EGC83100.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 347
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
+I +++ QVLK+T S GI++NK LAKLAS NKP + + +L+ L IKK
Sbjct: 116 IIAKKIQNQVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINEDDIPNILEDLDIKK 175
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ LG K L+ ++G+ + DLLK ++ L+ +G G +++ + RG +V+
Sbjct: 176 VHGLGNKSVEKLK-DIGIYKIKDLLKLDQEFLESLFG-KQGRYVYKVIRGEDKRKVETS- 232
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
K G+ F + K + + ++ +E+S ++ +DL+ A+T+ L
Sbjct: 233 -TKRKSIGREFTFRKNTKDMNILYSYI----DEISRKIENDLKAKDIKAYTINL 281
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|409408114|ref|ZP_11256558.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
gi|386432570|gb|EIJ45397.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
Length = 384
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 4/173 (2%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ +++ V T TCS G+A NKMLAK++S ++KP T + ++ + LP +K+
Sbjct: 142 VARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDGLTILTPEDIERRIWPLPARKI 201
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G K L LG+ TV DL + S + L+ +G + WL +A+G+ VQ
Sbjct: 202 NGIGPKAAEKLAA-LGIETVADLARASPELLRAHFGRSYSEWLGRVAQGVDDRPVQTYSE 260
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
PKS +F R L A + L+++ L +L DLE+ + T+ +
Sbjct: 261 PKSISRETTF--ERDLHARAD-RAQLSEIFTALCVKLAGDLERKGYVGRTIGI 310
>gi|417002085|ref|ZP_11941474.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479226|gb|EGC82322.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 344
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 104 KATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMN 163
+ +V E D D+ KL L+ +V ++T + S GI++NK LAKLAS
Sbjct: 98 QVSVDEAYLVVDTDNPQKLAHI-------LQDKVQRQTGISISVGISYNKFLAKLASDWK 150
Query: 164 KPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESY 223
KP T + + +L + I K+ +G K L N++GV+ VGDLLK E+ L +++
Sbjct: 151 KPHGITKINKDDLDKMLPDISIDKVHGIGRKTSQKL-NKIGVSKVGDLLKLDEEYLTDNF 209
Query: 224 GFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 258
G GT+++++ RG+ +V KS G ++F
Sbjct: 210 G-KQGTYIYHVIRGVDNRKVNPSRKRKSIGKERTF 243
>gi|205351637|ref|YP_002225438.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|375122418|ref|ZP_09767582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|445131501|ref|ZP_21381799.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|205271418|emb|CAR36226.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326626668|gb|EGE33011.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|444850327|gb|ELX75429.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
Length = 351
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEYLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|409440154|ref|ZP_11267166.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
gi|408747756|emb|CCM78348.1| DNA polymerase IV [Rhizobium mesoamericanum STM3625]
Length = 362
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +E+R ++ + T SAGI++NK LAK+AS +NKP Q + + G +++LP++K
Sbjct: 129 IASEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVQKF 188
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + + LG+ T DL + + + L E +G +G + + IARGI +V+ +
Sbjct: 189 HGVGPATAEKM-HRLGIDTGADLKEKTLEFLVEHFG-KSGPYFYGIARGIDERQVKPDRV 246
Query: 249 PKSHGSGKSF 258
KS G+ +F
Sbjct: 247 RKSVGAEDTF 256
>gi|315125765|ref|YP_004067768.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
gi|315014279|gb|ADT67617.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
Length = 353
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
LI E+R ++LK T T SAGIA K +AK+AS +NKP Q T+ V L++LP+KK
Sbjct: 121 LIAQEIRDEILKATGLTASAGIAPLKFVAKVASDLNKPNGQCTITPDQVWEFLETLPLKK 180
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+ + GK+ LG T GD+ + E L ++G G LWN + G EV+
Sbjct: 181 IPGV-GKVTFEKLKALGFETCGDIRRSDESFLASNFG-KYGHVLWNRSHGKDDREVEVTR 238
Query: 248 LPKSHGSGKSF 258
+ KS G ++F
Sbjct: 239 IRKSVGVERTF 249
>gi|421733502|ref|ZP_16172606.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
gi|407078538|gb|EKE51340.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
Length = 430
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 127/304 (41%), Gaps = 71/304 (23%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARK--GRCERASIDE 59
V S+M A+++CP + V +PV D+ YR +V + + R E+ S+DE
Sbjct: 70 VNSAMASARARQLCP--DGVFLPV-----DMHYYRMMSRRIVEEVFSQVTDRFEQVSVDE 122
Query: 60 VYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHR 119
Y+D++ A +LA P + W+
Sbjct: 123 AYMDVSGA---LLAWQRPTR---------------------------IGAWI-------- 144
Query: 120 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
R +V + TCS G+A NK++AK+AS KP +P +
Sbjct: 145 --------------RQEVASRSHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEF 190
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGI 238
+ +P++ + +G L L E GV TV DL K SE L + G T L+ ARG+
Sbjct: 191 VQMMPLRGIPGIGPSLERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGM 249
Query: 239 SGEEVQARLLPKSHGSGKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH 297
G EV KS S +FP R ++ V + L + C+E++ S L + +A
Sbjct: 250 DGREVTPYTPEKSISSESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVAR 302
Query: 298 TLTL 301
T+T+
Sbjct: 303 TVTV 306
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|374623299|ref|ZP_09695812.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
gi|373942413|gb|EHQ52958.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
Length = 383
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 132 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
L+ V T TCS GIA NK+LAKL S ++KP T + V + LP+ K+ +
Sbjct: 146 RLKQAVRDATGLTCSIGIAPNKLLAKLCSELDKPDGLTLLTTDDVPTRIWPLPVGKVNGI 205
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L+ LG+ TVGDL L+E +G G WL ARGI V+ +P+S
Sbjct: 206 GPKAAARLE-ALGILTVGDLAACGPGLLREQFGPTYGAWLHQAARGIDDRPVETVSVPRS 264
Query: 252 HGSGKSFP---GPRALKTVASVQHWLNQLCEELSERL 285
+F PR + A + LC +S+ L
Sbjct: 265 VSRETTFERDLHPR--QDRAELSEIFTALCMRVSQDL 299
>gi|327277898|ref|XP_003223700.1| PREDICTED: DNA polymerase iota-like [Anolis carolinensis]
Length = 686
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 162/396 (40%), Gaps = 53/396 (13%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M EAKE CP + LV DL+ YR +V ++L ER DE ++D+
Sbjct: 97 MSVKEAKEKCPDLLLV------NGEDLTKYREMSYKVTALLEEFTPLVERLGFDENFVDI 150
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ + L + ++ ++ + HI ++ + ++ LA
Sbjct: 151 TELVDLKLEQWKKDAFSKI---SFSGHIYNKQTVNLHNPVHI---------------RLA 192
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP 184
G I LR + T AG+A NK+L+KL SG KP QQT + S + L+ SL
Sbjct: 193 VGSQIAATLREAMYHRLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLLPESHQDLILSLD 252
Query: 185 -IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
I K+ +G K L LG++TV DL S L+ G + + ++RG V
Sbjct: 253 HIGKVPGIGYKTTKRLMM-LGISTVRDLQLCSTVILERELGGSAAQHIQKLSRGEDDSLV 311
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + A V+ + +L L RL D R HT+ L
Sbjct: 312 TPSGPPQSLSDEDSF---KKCSSEAEVKKKVEELLTNLLHRLYKD----GRKPHTIRLTL 364
Query: 304 SAFKSSDSDSRKKFPSKSCPL------RYGT--AKIQEDTFNLFQAGLREFLGSFGVKTQ 355
F ++ ++ S+ CP+ R GT A I+ + ++ F VK
Sbjct: 365 RKFSPTNKWFNRE--SRQCPIPSHLIQRIGTDDASIKAQLVVIL---MKLFHKMINVK-- 417
Query: 356 GSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGP 391
+ + +T L+V S + S SI Y P
Sbjct: 418 ----APFHLTLLNVCFSNLKAPASNKKSIGFYLTHP 449
>gi|312866336|ref|ZP_07726554.1| putative DNA polymerase IV [Streptococcus downei F0415]
gi|311098030|gb|EFQ56256.1| putative DNA polymerase IV [Streptococcus downei F0415]
Length = 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E+C Q + + YR G ++ I R E SIDE
Sbjct: 66 VHSAMNSKEALELCSQAVFIS-------GNYQKYRQVGQQIREIFKRYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + +++ + +E TCSAG+++NK LAKLAS +KP T + + L
Sbjct: 132 -----AVKLAKMIQVDIWREIHLTCSAGVSYNKFLAKLASDYDKPHGLTLILPEEAEDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K + GK ++LGV DLL+ E L + +G G L+ ARGIS
Sbjct: 187 KVLPIEKFHGV-GKQSVKRLHDLGVYKGQDLLELPEMTLIDYFG-RFGYDLYRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|332185220|ref|ZP_08386969.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
gi|332014944|gb|EGI57000.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
Length = 370
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 140 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 199
ET T SAG+++NK +AKLAS NKP +P G + +LP+K+ +G +
Sbjct: 142 ETGLTASAGVSYNKFIAKLASDQNKPDGICVIPPHHGPGFVAALPVKRFHGVGPVTARKM 201
Query: 200 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 259
+ LG+ T DL D L +G + +L+ ARGI V+A+ + KS G+ ++F
Sbjct: 202 E-ALGILTGADLRDQPRDFLHRHFG-SYAEYLYGAARGIDHRPVRAQRVAKSVGAERTF- 258
Query: 260 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+T S + L+ E++ E +E++ I T+TL
Sbjct: 259 -----ETDLSERDALHAALEKVVEAAWIRIERSGAIGRTVTL 295
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +++ + +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K
Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKF 184
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G +L+N LG+ T DL + +L+ + G L+ ARGI V+ +
Sbjct: 185 FGVGKVTSNTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRV 242
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G+ + + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 243 RKSVGAETTLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|17546306|ref|NP_519708.1| DNA polymerase IV [Ralstonia solanacearum GMI1000]
gi|17428603|emb|CAD15289.1| probable dna polymerase iv (pol iv) protein [Ralstonia solanacearum
GMI1000]
Length = 362
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 120 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 179
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 180 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 237
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 238 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|416510596|ref|ZP_11737194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416520105|ref|ZP_11740182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416558896|ref|ZP_11760418.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363549265|gb|EHL33622.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363556044|gb|EHL40261.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363576390|gb|EHL60224.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
Length = 351
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPDFLKTLPLAKILGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>gi|333904386|ref|YP_004478257.1| DNA polymerase IV [Streptococcus parauberis KCTC 11537]
gi|333119651|gb|AEF24585.1| DNA polymerase IV [Streptococcus parauberis KCTC 11537]
Length = 364
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 105/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + S Y+ G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYSKYKEIGLQIREIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTENK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I +++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---ALKIAKLIQLDIWTELHLTCSAGVSYNKFLAKLASDYQKPRGLTLVLPDDALSFLSD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++GV DLL +E +L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGVNKGADLLLLTEMQLIDQFG-RFGYDLYRKARGISQSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKPNRIRKSIGSERTY 262
>gi|125656404|gb|ABN48550.1| polymerase ATREV1-630 [Arabidopsis thaliana]
Length = 630
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 63/245 (25%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V + M AK++CPQ LV VP + +Y + IL R R +A S DE
Sbjct: 426 VKAGMFVRHAKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEA 478
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++D L +V+ E L S I
Sbjct: 479 FLDVSD-------------LSDVETEVLASTI---------------------------- 497
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ L
Sbjct: 498 -------------RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G L L + + T G L S+D LQ+ +G TG LW+ +RG+
Sbjct: 545 DQLPVGTLPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDL 603
Query: 241 EEVQA 245
V A
Sbjct: 604 RSVTA 608
>gi|22095618|sp|Q8XZ19.2|DPO4_RALSO RecName: Full=DNA polymerase IV; Short=Pol IV
Length = 357
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 122 LLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLD 181
L G I ++R +V +E T SAG+A NK +AK+AS NKP V V +
Sbjct: 115 LAGSGTRIAEDIRRRVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVA 174
Query: 182 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGE 241
+LP++++ + GK+ + LG T GDL + D+LQ+ +G + G L ++ RGI
Sbjct: 175 ALPVERLFGV-GKVTAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHR 232
Query: 242 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
+VQ + KS +++ L+T+ Q L L ++L+ R+
Sbjct: 233 QVQPSQIRKSVSVEETYAT--DLRTLDDCQRELTILVDQLAARV 274
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 198
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 199 PG-AGKVTLKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|456369572|gb|EMF48472.1| DNA polymerase IV [Streptococcus parauberis KRS-02109]
gi|457094640|gb|EMG25159.1| DNA polymerase IV [Streptococcus parauberis KRS-02083]
Length = 364
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 105/256 (41%), Gaps = 62/256 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + S Y+ G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYSKYKEIGLQIREIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTENK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
+ I +++ + E TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---ALKIAKLIQLDIWTELHLTCSAGVSYNKFLAKLASDYQKPRGLTLVLPDDALSFLSD 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++GV DLL +E +L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGVYKGADLLLLTEMQLIDQFG-RFGYDLYRKARGISQSP 246
Query: 243 VQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 247 VKPNRIRKSIGSERTY 262
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 136/311 (43%), Gaps = 36/311 (11%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKG-RCERASIDEV 60
V ++M G K++CP +LV VP + Y +V +L + S+DE
Sbjct: 133 VRAAMPGFIGKKLCP--DLVIVP-----TNFDKYCAVSRQVRDVLGQYDPNFAPMSLDEA 185
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESK-----DGNDSKATVKEWLCRCD 115
Y+DLTD + L E+ PE + +H+ G SK + +D + E
Sbjct: 186 YMDLTDYLK--LRESLPEEM-----RTFYAHVEGCVSKKDSSTENHDEDGMLGETQTNVK 238
Query: 116 ADHRDKLLACGVL-IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVP-- 172
+ C +V E+R ++ + T T SAGIA N MLAK+ S NKP Q +P
Sbjct: 239 MSETSVVFGCDAEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSD 298
Query: 173 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTW 230
++ + +LP++K+ +G + L N LG++T L E + S F+ + +
Sbjct: 299 RQAIMDFIRNLPVRKVCGIGKVMAQQL-NALGISTCTHLY---EQRAVLSLLFSPVSSSH 354
Query: 231 LWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 290
L +A G+ ++ KS ++F + S L + C EL E L DL+
Sbjct: 355 LLRVALGLGATRIERESERKSMSVERTF-------SELSKPADLYRKCWELCEALAKDLQ 407
Query: 291 QNKRIAHTLTL 301
T+T+
Sbjct: 408 DEGLKGRTITI 418
>gi|340752758|ref|ZP_08689554.1| DNA polymerase IV [Fusobacterium sp. 2_1_31]
gi|340567209|gb|EEO37603.2| DNA polymerase IV [Fusobacterium sp. 2_1_31]
Length = 347
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 71/328 (21%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVS-ILARKGRCERASIDEVYL 62
S+M+ +AK +CP+ L+ +PV D Y +E+ + IL + E + DE Y+
Sbjct: 46 SAMKVSDAKLLCPK--LIAIPV-----DKKEYIRISNEIHNLILKITNKVEFIATDEGYI 98
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
DLT + PE+ + ALK K +KE
Sbjct: 99 DLTGIVK-------PENKKQF---ALKF-------------KERIKEL------------ 123
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
T TCS GI NK+ AK+AS +NKP F + K ++
Sbjct: 124 ------------------TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKDFVEY 163
Query: 183 LPIKKMKQL---GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
+ KK+K + G K L+++ + V D+ K+S D L + YG + G L+ RGI+
Sbjct: 164 ISDKKIKIIPGVGKKFFEILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGIN 222
Query: 240 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 299
+EV+ S G+ +++ P L+T + ++ N L E +RL + ++ + T+
Sbjct: 223 HDEVEYEREIHSIGNEETYSIP--LQTNSELEREFNSLFEYTYQRLLKNNVFSQSV--TV 278
Query: 300 TLHASAFKSSDSDSRKKFPSKSCPLRYG 327
+ S+FK+ + KF +K Y
Sbjct: 279 KIRYSSFKTYTKSKKLKFATKDKDFLYN 306
>gi|300814315|ref|ZP_07094587.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511582|gb|EFK38810.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 344
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 22/240 (9%)
Query: 134 RMQ--VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 191
+MQ +LK+T + S G++ NK LAKLAS NKP + V +L L I+K+ +
Sbjct: 120 KMQDNILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIITKDEVPDILMDLDIRKIHGI 179
Query: 192 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 251
G K L+N LG+ V DL ED L +G +G ++ RGI EVQ ++ KS
Sbjct: 180 GKKSEDKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIKRKS 237
Query: 252 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 311
G+ +F P + V +++++N E+S+ DL + + TLT+
Sbjct: 238 LGTENTF-FPTDNRRV--LENYINIFSVEVSQ----DLIKRNLLGFTLTIKL-------K 283
Query: 312 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALS 368
+ + K +KS YG K +ED REF ++ G S+ S +I L+
Sbjct: 284 NDKFKIRTKSRTYEYGLYK-KEDIHREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQLT 342
>gi|51595246|ref|YP_069437.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 32953]
gi|153950157|ref|YP_001402117.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|170025513|ref|YP_001722018.1| DNA polymerase IV [Yersinia pseudotuberculosis YPIII]
gi|186894264|ref|YP_001871376.1| DNA polymerase IV [Yersinia pseudotuberculosis PB1/+]
gi|81640247|sp|Q66DZ7.1|DPO4_YERPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044620|sp|A7FLI9.1|DPO4_YERP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51588528|emb|CAH20136.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Yersinia pseudotuberculosis IP 32953]
gi|152961652|gb|ABS49113.1| DNA polymerase IV [Yersinia pseudotuberculosis IP 31758]
gi|169752047|gb|ACA69565.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
gi|186697290|gb|ACC87919.1| UMUC domain protein DNA-repair protein [Yersinia pseudotuberculosis
PB1/+]
Length = 352
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 123 LACG---VLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 179
LACG LI E+R + E T SAGIA K LAK+AS +NKP Q + + ++
Sbjct: 113 LACGGSATLIAQEIRQSIASELNLTASAGIAPIKFLAKIASELNKPNGQYVITPNQIQPF 172
Query: 180 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 239
L LP+ K+ +G LQ LG+ T G++ K+ +L + +G G LW + GI
Sbjct: 173 LQDLPLSKIPGVGAVTAKRLQ-ALGLVTCGEIQKYPLAELLKHFG-KFGRVLWERSHGID 230
Query: 240 GEEVQARLLPKSHGSGKSF 258
E+ L KS G K+
Sbjct: 231 EREISPDRLRKSVGVEKTL 249
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 114 CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF 173
D K + V I E+R ++ K TE T SAG+ ++K +AKLAS NKP T V
Sbjct: 109 LDVTFNKKNIPFAVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLP 168
Query: 174 SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWN 233
V +D LPI + GK+ +LG+ T DL + ++L + +G TG + +
Sbjct: 169 DDVTAFIDPLPIGSFHGV-GKVTAQKMKKLGIHTGKDLRTKNINELVQHFG-KTGIYYYK 226
Query: 234 IARGISGEEVQARLLPKSHGSGKSF 258
I+RG EV+ KS GS +F
Sbjct: 227 ISRGEDEREVEPFRERKSLGSENTF 251
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
+ E+R + ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+ GK+ LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 183 PGV-GKVTLKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,251,967,265
Number of Sequences: 23463169
Number of extensions: 428982430
Number of successful extensions: 1042893
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 2459
Number of HSP's that attempted gapping in prelim test: 1026479
Number of HSP's gapped (non-prelim): 13063
length of query: 661
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 512
effective length of database: 8,863,183,186
effective search space: 4537949791232
effective search space used: 4537949791232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)