BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006108
(661 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 196/350 (56%), Gaps = 15/350 (4%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V SM D+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y
Sbjct: 59 VTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRC 114
+DLT A + L + P S D + ++ G + + K ++ +WL
Sbjct: 119 VDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSL 178
Query: 115 DADH---RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV 171
D+ D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V
Sbjct: 179 QIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLV 238
Query: 172 PFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWL 231
SV L +PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL
Sbjct: 239 SHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWL 298
Query: 232 WNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQ 291
+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D
Sbjct: 299 YAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRND 358
Query: 292 NKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 340
N R+A L + D R + C L RY K+ D F + +
Sbjct: 359 NDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 214/409 (52%), Gaps = 39/409 (9%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVY 61
V +M D+AK++CP + L QV +RGKA+L+ YR A EV+ I++ ERASIDE Y
Sbjct: 59 VTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAVIERASIDEAY 118
Query: 62 LDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKE------------ 109
+DLT A + E L ++ + + + +L +G TV+E
Sbjct: 119 IDLTSAVQ--------ERLQKLQGQPISADLLPSTYIEGLPRGPTVEETVQKEAIRKQGL 170
Query: 110 --WLCRCDAD---HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNK 164
WL +D D L G +IV E+R + +T F CSAGI+HNK+LAKLA G+NK
Sbjct: 171 LQWLDSLQSDDPTSPDLRLTVGAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNK 230
Query: 165 PAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG 224
P +QT V SV L +PI+K++ LGGKLG S+ LG+ +GDL +F+E +LQ +G
Sbjct: 231 PNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQLQSHFG 290
Query: 225 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 284
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ER
Sbjct: 291 EKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELEER 350
Query: 285 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGL 343
L D N R+A L + D R + C L RY K+ +D F A +
Sbjct: 351 LTKDRNDNDRVATQLVVSIRF----QGDRRLSSLRRCCALPRYDAHKMSQDAF----AAI 402
Query: 344 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 392
R + G++T+ S +T L + A+K C+ + F D
Sbjct: 403 RN-CNTSGIQTEWSP----PLTMLFLCATKFSAAAPPACTDITAFLSSD 446
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 29/309 (9%)
Query: 10 EAKEVCPQIELVQVPVARG----------------KADLSSYRNAGSEVVSILARKG-RC 52
EAK+ CP++ V + K L YR+ ++++I+ +
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVV 141
Query: 53 ERASIDEVYLDLT-DAAEAMLAETPPESLDEVDEEAL--KSHILGLESKDGNDSKATVKE 109
++ASIDE +++LT D +L E P + D ++ +L ++ G +E
Sbjct: 142 KKASIDECFIELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFG---MVIEEE 198
Query: 110 WLCRCDADHR----DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKP 165
+ R D+ D L IV E+R + + ++TCSAG++ N ML+KL S NKP
Sbjct: 199 VVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKP 258
Query: 166 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 225
+QT + ++++ L SL I ++ LGGK G + N LG ++ D+ S D L + G
Sbjct: 259 NKQTILTKNAIQDYLVSLKITDIRMLGGKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQ 318
Query: 226 NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 285
G +WN+ GI E+ ++ KS S K+F + +K+ +W +L R
Sbjct: 319 TNGPLVWNLCHGIDNTEITTQVQIKSMLSAKNF-SQQKVKSEEDAINWFQVFASDLRSRF 377
Query: 286 CSDLEQNKR 294
+LE +R
Sbjct: 378 L-ELEGMRR 385
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 150/373 (40%), Gaps = 75/373 (20%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERA-SIDEV 60
V + M AK++CPQ LV VP + +Y + IL R R +A S DE
Sbjct: 426 VKAGMFVRHAKDLCPQ--LVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEA 478
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
+LD++D L +V+ E L S I
Sbjct: 479 FLDVSD-------------LSDVETEVLASTI---------------------------- 497
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
R ++L+ T + SAGI ++A+LA+ + KPA Q + V+ L
Sbjct: 498 -------------RNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFL 544
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
D LP+ + +G L L + + T G L S+D LQ+ +G TG LW+ +RG+
Sbjct: 545 DQLPVGTLPGVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDL 603
Query: 241 EEVQARLLPKSHGS----GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 296
V A KS G+ G F + + + VQH+L LC+E+S R L+ + I
Sbjct: 604 RSVTAVQESKSIGAEVNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIG 657
Query: 297 HTLTLHASAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 354
T TL K + K C R T D + Q ++ GSF +
Sbjct: 658 RTFTLKIKKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDV 717
Query: 355 QGSHYSGWRITAL 367
+ G +++ L
Sbjct: 718 KEVRGVGLQVSKL 730
>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1
Length = 717
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DLS YR +V +L ER DE ++DL
Sbjct: 79 MNVRDAKEKCPQLVLV------NGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDL 132
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + P E EV + H+ N+ + + HR L
Sbjct: 133 TEMVEKRLQQLPSE---EVPSVTVFGHVY-------NNQSVNLHNIM------HRR--LV 174
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 175 VGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 234
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL F L++ G + ++ G V
Sbjct: 235 HIKEIPGIGYKTAKRLEV-LGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPV 293
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S +F + + + + +L L R+C Q+ R HT+ L
Sbjct: 294 TPSGPPQSFSEEDTF---KKCSSEVEAKAKIEELLSSLLTRVC----QDGRKPHTVRLVI 346
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ SD S+ CP+
Sbjct: 347 RRY----SDKHCNRESRQCPI 363
>sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3
Length = 740
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 6 MRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYLDL 64
M +AKE CPQ+ LV DL+ YR +V +L ER DE ++DL
Sbjct: 104 MNVRDAKEKCPQLVLV------NGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDL 157
Query: 65 TDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKLLA 124
T+ E L + DE+ + H+ +S + D H L
Sbjct: 158 TEMVEKRLQQL---QSDELSAVTVSGHVYNNQS-------------INLLDVLHIR--LL 199
Query: 125 CGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL- 183
G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S + L+ SL
Sbjct: 200 VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLN 259
Query: 184 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 243
IK++ +G K L+ LG+ +V DL FS L++ G + + ++ G V
Sbjct: 260 HIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPV 318
Query: 244 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 303
P+S SF + + ++ + +L L R+C Q+ R HT+ L
Sbjct: 319 ILSGPPQSFSEEDSF---KKCSSEVEAKNKIEELLASLLNRVC----QDGRKPHTVRLII 371
Query: 304 SAFKSSDSDSRKKFPSKSCPL 324
+ S R+ S+ CP+
Sbjct: 372 RRYSSEKHYGRE---SRQCPI 389
>sp|P58963|DPO4_ESCFE DNA polymerase IV (Fragment) OS=Escherichia fergusonii GN=dinB PE=3
SV=1
Length = 331
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 42 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 94
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 95 YLDVTDSVH------------------------------------------CHGSA---- 108
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAGIA K LAK+AS MNKP Q + + V L
Sbjct: 109 ------TLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFL 162
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 163 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 220
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 221 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 262
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB
PE=3 SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3
SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3
SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q47155|DPO4_ECOLI DNA polymerase IV OS=Escherichia coli (strain K12) GN=dinB PE=1
SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B1J100|DPO4_ECOLC DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=dinB PE=3 SV=1
Length = 351
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B2U3S3|DPO4_SHIB3 DNA polymerase IV OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=dinB PE=3 SV=1
Length = 354
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 56 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 108
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 109 YLDVTDSVH------------------------------------------CHGSA---- 122
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 123 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 176
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 177 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 234
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 235 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 276
>sp|Q83M86|DPO4_SHIFL DNA polymerase IV OS=Shigella flexneri GN=dinB PE=3 SV=1
Length = 351
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP++K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLEKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZHZ2|DPO4_ECO24 DNA polymerase IV OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=dinB PE=3 SV=1
Length = 351
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 125/301 (41%), Gaps = 68/301 (22%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M EA E CPQ + + YR G EV I + E SIDE
Sbjct: 66 VHSAMSSKEAYERCPQAIFIS-------GNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T E+K G
Sbjct: 119 YLDVT------------------------------ENKMG-------------------- 128
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
+ V + ++ + + TCSAGI++NK LAKLAS KP T + + L
Sbjct: 129 --IKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI+K +G + L + LGV T DLL SE L + +G G L+ ARGI+
Sbjct: 187 KPLPIEKFHGVGKRSVEKL-HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINA 244
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 300
V+ + KS GS K++ + L A ++ +++ +R+ + LE+NK++ T+
Sbjct: 245 SPVKPDRVRKSIGSEKTY--GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIV 298
Query: 301 L 301
L
Sbjct: 299 L 299
>sp|P59477|DPO4_ECOL6 DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q32J17|DPO4_SHIDS DNA polymerase IV OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=dinB PE=3 SV=1
Length = 351
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZWJ6|DPO4_ECOHS DNA polymerase IV OS=Escherichia coli O9:H4 (strain HS) GN=dinB
PE=3 SV=1
Length = 351
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+A K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV OS=Escherichia coli O157:H7 GN=dinB PE=3 SV=1
Length = 351
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 120/292 (41%), Gaps = 72/292 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEV 60
V S+M A ++CP + L+ G+ D +Y+ A + + I +R R E S+DE
Sbjct: 53 VRSAMPTGMALKLCPHLTLLP-----GRFD--AYKEASNHIREIFSRYTSRIEPLSLDEA 105
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+TD+ C A
Sbjct: 106 YLDVTDSVH------------------------------------------CHGSA---- 119
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
LI E+R + E + T SAG+ K LAK+AS MNKP Q + + V L
Sbjct: 120 ------TLIAQEIRQTIFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFL 173
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+LP+ K+ + GK+ + +G+ T GD+ K L + +G G LW ++GI
Sbjct: 174 QTLPLAKIPGV-GKVSAAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDE 231
Query: 241 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 292
+V + L KS G ++ + HW CE + ERL +LE+
Sbjct: 232 RDVNSERLRKSVGVERTM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q5LYC2|DPO4_STRT1 DNA polymerase IV OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=dinB PE=3 SV=1
Length = 367
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
+ LPI+K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 EKLPIEKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 123/302 (40%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+TD LG++S
Sbjct: 121 DVTDNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVKKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V+ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKYDRIRKSIGSERTY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 122/299 (40%), Gaps = 68/299 (22%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CPQ + + Y+ G +V I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPQAIFIS-------GNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T E+K G
Sbjct: 121 DVT------------------------------ENKLG---------------------- 128
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
++ V I ++ + E T SAG+++NK LAK+AS M KP T + G+L S
Sbjct: 129 ISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILAS 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LP++K +G K L +E+GV T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPVEKFHGVGKKTVERL-HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
V+ + KS G +++ + L V L LC +R+ + L++N + T+ L
Sbjct: 247 VKVDRVRKSSGKERTY--RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>sp|Q5PF76|DPO4_SALPA DNA polymerase IV OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=dinB PE=3 SV=1
Length = 351
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>sp|Q03J54|DPO4_STRTD DNA polymerase IV OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=dinB PE=3 SV=1
Length = 367
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 KKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=dinB PE=3 SV=1
Length = 359
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 128 LIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK 187
L+ E++ ++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K
Sbjct: 124 LMALEIKERIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGK 183
Query: 188 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL 247
+G L N +GV DLLKFSE++L + + + G L+ ARGI V
Sbjct: 184 FFGVGRVTKNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYR 241
Query: 248 LPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 307
+ KS GK ++ + + L ++ E +SE LC ++ K + TL + + FK
Sbjct: 242 IRKS--IGKEITLREDIEDIDEMIEILERIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>sp|Q5M2Y5|DPO4_STRT2 DNA polymerase IV OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=dinB PE=3 SV=1
Length = 367
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 62/258 (24%)
Query: 2 VVSSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSIL-ARKGRCERASIDEV 60
V S+M EA E CP + + S YR G ++ I E SIDE
Sbjct: 66 VHSAMSSKEAYERCPNAVFIS-------GNYSHYREVGMQIREIFKCYTDLVEPMSIDEA 118
Query: 61 YLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRD 120
YLD+T ++ LG++S
Sbjct: 119 YLDVT------------------------TNKLGIKS----------------------- 131
Query: 121 KLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLL 180
V + ++ + +E TCSAG+++NK +AKLAS KPA T V + L
Sbjct: 132 -----AVKVAKLIQYDIWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFL 186
Query: 181 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 240
LPI K +G K L +++ + T DLLK SE L + +G G L+ ARGIS
Sbjct: 187 KKLPIAKFHGVGKKSVERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISN 244
Query: 241 EEVQARLLPKSHGSGKSF 258
V+ + KS GS +++
Sbjct: 245 SPVKPNRVRKSIGSERTY 262
>sp|Q57SU1|DPO4_SALCH DNA polymerase IV OS=Salmonella choleraesuis (strain SC-B67)
GN=dinB PE=3 SV=1
Length = 351
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 110 WLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT 169
WL D+ H LI E+R + E + T SAG+A K LAK+AS +NKP Q
Sbjct: 106 WLDVTDSPH---CYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQY 162
Query: 170 TVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT 229
+ + V G L +LP+ K+ +G L+N +G+ T GD+ + L + +G G
Sbjct: 163 VITPADVPGFLKTLPLAKIPGVGKVSAAKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGR 220
Query: 230 WLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDL 289
LW ++GI +V + L KS G ++ + W + CE + E L +L
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTL--------AEDIHEWSD--CEAIIEHLYPEL 270
Query: 290 EQNKRIA 296
E+ I
Sbjct: 271 ERRLAIV 277
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++
Sbjct: 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+G + L G+ T GDL +++ L+E++G + G L+N ARG+ V+
Sbjct: 184 PGVGKVMEGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQ 241
Query: 249 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
+S S +F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 242 VQSISSEDTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|Q1JK63|DPO4_STRPC DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q1JA16|DPO4_STRPB DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=dinB PE=3 SV=1
Length = 364
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 124/302 (41%), Gaps = 74/302 (24%)
Query: 4 SSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASIDEVYL 62
S+M EA E CP+ + + YR G ++ I R E SIDE YL
Sbjct: 68 SAMSSKEAYERCPKAIFIS-------GNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYL 120
Query: 63 DLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADHRDKL 122
D+T+ LG++S
Sbjct: 121 DVTNNK------------------------LGIKS------------------------- 131
Query: 123 LACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS 182
V I ++ + KE TCSAG+++NK LAKLAS KP T V L
Sbjct: 132 ---AVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAK 188
Query: 183 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE 242
LPI+K +G K L +++G+ T DLL E L + +G G L+ ARGIS
Sbjct: 189 LPIEKFHGVGKKSVEKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSP 246
Query: 243 VQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTL 299
V++ + KS GS +++ A + + + E+S +R+ + L+ +K++ T+
Sbjct: 247 VKSDRIRKSIGSERTY---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTI 297
Query: 300 TL 301
L
Sbjct: 298 VL 299
>sp|Q67QM6|DPO4_SYMTH DNA polymerase IV OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=dinB PE=3 SV=1
Length = 361
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 126 GVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPI 185
V + EL+ + E T SAG+++ K LAKLAS M KP T + + + LL +LP+
Sbjct: 117 AVRVARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPV 176
Query: 186 KKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 245
+K+ +G +L + LG+ T GDLL + D L++ +G L +ARGI V
Sbjct: 177 RKLWGVGPASEQAL-HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVP 234
Query: 246 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 301
KS G +FP + + +L++L E ++ L +L + A T+T+
Sbjct: 235 YREAKSIGEENTFP------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>sp|A5IU61|DPO4_STAA9 DNA polymerase IV OS=Staphylococcus aureus (strain JH9) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
>sp|A6U2Z9|DPO4_STAA2 DNA polymerase IV OS=Staphylococcus aureus (strain JH1) GN=dinB
PE=3 SV=1
Length = 356
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 129 IVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKM 188
I +R +L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I
Sbjct: 124 IAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDF 183
Query: 189 KQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLL 248
+ GK + ++ G+ DL + +E +L +G G L+N ARGI EV++ +
Sbjct: 184 PGV-GKASKKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRV 241
Query: 249 PKSHGSGKSF 258
KS G+ ++F
Sbjct: 242 RKSVGTERTF 251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,554,961
Number of Sequences: 539616
Number of extensions: 10347890
Number of successful extensions: 25454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 24590
Number of HSP's gapped (non-prelim): 642
length of query: 661
length of database: 191,569,459
effective HSP length: 124
effective length of query: 537
effective length of database: 124,657,075
effective search space: 66940849275
effective search space used: 66940849275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)