Query 006110
Match_columns 661
No_of_seqs 169 out of 831
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.3 0.058 2E-06 58.1 15.2 99 86-191 130-238 (511)
2 3gia_A Uncharacterized protein 96.0 0.039 1.3E-06 58.3 12.2 78 87-176 126-208 (444)
3 3l1l_A Arginine/agmatine antip 95.8 0.032 1.1E-06 58.9 10.2 80 88-175 127-210 (445)
4 3kcp_B Cellulosome anchoring p 27.1 16 0.00056 35.3 0.7 14 132-145 55-68 (187)
5 2bm3_A Type 2 cohesin, scaffol 27.0 17 0.00057 34.8 0.7 13 132-144 43-55 (166)
6 2rdd_B UPF0092 membrane protei 15.5 2.3E+02 0.008 20.2 4.6 18 366-383 1-18 (37)
7 2jln_A MHP1; hydantoin, transp 15.2 3.1E+02 0.011 29.7 7.7 32 174-205 225-271 (501)
8 1nrp_R Receptor based peptide 14.2 56 0.0019 21.7 0.8 16 208-223 5-20 (26)
9 3l8q_A Cellulosomal scaffoldin 11.9 59 0.002 34.3 0.7 13 132-144 209-221 (350)
10 3rhw_A Avermectin-sensitive gl 11.2 4.3E+02 0.015 27.0 7.0 111 280-398 219-347 (347)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.28 E-value=0.058 Score=58.11 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=53.3
Q ss_pred eehhHHHHHHHHHHhhhccccccccchhhH----HHHHHHHHHhhhhhhccccCccee----eecChHHHHHHHHhcCcc
Q 006110 86 LVIVSIIILVALFSIQRFGTGKVGFMFAPV----LALWFFSLGSIGLYNLVKYDISVV----RAFNPIYIYLFFKKNGKD 157 (661)
Q Consensus 86 Vv~is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~~WF~~i~~~Gi~ni~~~~p~Vl----~AlnP~yai~f~~~~~~~ 157 (661)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888899999998777654322 122344455566665544233211 1122210 1234
Q ss_pred hhhhccceeeeecchhhhhccCCCC--Cccchhhhh
Q 006110 158 AWSALGGCVLCITGAEAMFADLGHF--SVKAIQIAF 191 (661)
Q Consensus 158 ~~~~LG~VvL~vTG~EALyADmGHF--g~~~Ir~aw 191 (661)
+|..+..++.+.+|-|+.-.=-+-. .+|.+..|=
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai 238 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM 238 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHH
Confidence 5666777889999999764333322 234454443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.05 E-value=0.039 Score=58.32 Aligned_cols=78 Identities=22% Similarity=0.162 Sum_probs=44.9
Q ss_pred ehhHHHHHHHHHHhhhcccccccc---chhhHHHHHHHHHHhhhhhhccccCcceeee-cChHHHHHHHHhcCcc-hhhh
Q 006110 87 VIVSIIILVALFSIQRFGTGKVGF---MFAPVLALWFFSLGSIGLYNLVKYDISVVRA-FNPIYIYLFFKKNGKD-AWSA 161 (661)
Q Consensus 87 v~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~~WF~~i~~~Gi~ni~~~~p~Vl~A-lnP~yai~f~~~~~~~-~~~~ 161 (661)
..+++++++.+..+.-+|....++ .+..+.++=++.+.+.|+... +|+-+.. ++|. ++. -+..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 456788888888888899876664 444544444444455555543 3443322 2332 211 2233
Q ss_pred ccceeeeecchhhhh
Q 006110 162 LGGCVLCITGAEAMF 176 (661)
Q Consensus 162 LG~VvL~vTG~EALy 176 (661)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 445678889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.81 E-value=0.032 Score=58.95 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHhhhhhhccccCccee-eecChHHHHHHHHhcCcchhhhcc
Q 006110 88 IVSIIILVALFSIQRFGTGKVGFM---FAPVLALWFFSLGSIGLYNLVKYDISVV-RAFNPIYIYLFFKKNGKDAWSALG 163 (661)
Q Consensus 88 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~~WF~~i~~~Gi~ni~~~~p~Vl-~AlnP~yai~f~~~~~~~~~~~LG 163 (661)
.+++++++++..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..++|.-.- ....-+..+.
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 198 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAAWNVSGLG-----TFGAIQSTLN 198 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccccCccCCc-----cHHHHHHHHH
Confidence 456777777778888888777655 444444333333444443 3345443 344443110 0112233455
Q ss_pred ceeeeecchhhh
Q 006110 164 GCVLCITGAEAM 175 (661)
Q Consensus 164 ~VvL~vTG~EAL 175 (661)
.++.+.+|-|+.
T Consensus 199 ~~~~af~G~e~~ 210 (445)
T 3l1l_A 199 VTLWSFIGVESA 210 (445)
T ss_dssp HHHHTTTTTTHH
T ss_pred HHHHHHHhHHHH
Confidence 567778888865
No 4
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=27.10 E-value=16 Score=35.34 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=8.4
Q ss_pred cccCcceeeecChH
Q 006110 132 VKYDISVVRAFNPI 145 (661)
Q Consensus 132 ~~~~p~Vl~AlnP~ 145 (661)
++|||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 34666666666664
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=26.99 E-value=17 Score=34.84 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=9.3
Q ss_pred cccCcceeeecCh
Q 006110 132 VKYDISVVRAFNP 144 (661)
Q Consensus 132 ~~~~p~Vl~AlnP 144 (661)
++|||+||+|+||
T Consensus 43 IKYDP~VLqaVn~ 55 (166)
T 2bm3_A 43 IVYDPKVLMAVDP 55 (166)
T ss_dssp EECCTTTEEEECT
T ss_pred EEECccceEeecC
Confidence 4577777777777
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.49 E-value=2.3e+02 Score=20.20 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=10.0
Q ss_pred CccHHHHHHHHHHHHHHH
Q 006110 366 GGWLPLAFASVFLCVMYI 383 (661)
Q Consensus 366 GGW~pl~ia~~~~~iM~~ 383 (661)
|||..++.-++++.+||.
T Consensus 1 ~~~~~~l~~v~~~~ifYF 18 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYF 18 (37)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 456555555555566643
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=15.16 E-value=3.1e+02 Score=29.73 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=19.8
Q ss_pred hhhccCCCCCccchh------------h---hhhhhHhHHHHHhhcc
Q 006110 174 AMFADLGHFSVKAIQ------------I---AFTLVVFPCLLLAYMG 205 (661)
Q Consensus 174 ALyADmGHFg~~~Ir------------~---aw~~~V~P~L~L~Y~G 205 (661)
..-+|...|.|++-. . +++....|..++.-+|
T Consensus 225 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG 271 (501)
T 2jln_A 225 VSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIG 271 (501)
T ss_dssp TTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 447899999876644 2 3344556665555555
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=14.21 E-value=56 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.717 Sum_probs=0.0
Q ss_pred hhhccCcccccccccc
Q 006110 208 AYLMKYPDSANRIFYD 223 (661)
Q Consensus 208 A~Ll~~p~~~~npFf~ 223 (661)
++|++||.+.-.||+.
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
No 9
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=11.89 E-value=59 Score=34.29 Aligned_cols=13 Identities=54% Similarity=0.981 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 006110 132 VKYDISVVRAFNP 144 (661)
Q Consensus 132 ~~~~p~Vl~AlnP 144 (661)
++|||.||+|+||
T Consensus 209 IKYDP~VLqaV~p 221 (350)
T 3l8q_A 209 IKYDPTVLQAVNP 221 (350)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhHeeeccC
No 10
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=11.18 E-value=4.3e+02 Score=27.04 Aligned_cols=111 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHHHHHHHHhcc---------hHHHHHHHHHHHH
Q 006110 280 QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTN---------LLLVLCFPLVFGS 350 (661)
Q Consensus 280 QIYiP~vNw~Lm~~~i~vv~~F~~s~~l~~AYGiAVt~~M~iTT~L~~~v~~~~w~~~---------~~~~~~~~~~f~~ 350 (661)
|+|+|.+ ++.++..+..+=..++.+.==++++|..+.+|+++..+- .+.| .+...+++.+|++
T Consensus 219 ~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~----~~lP~~S~v~~id~~~~~~~~~v~~s 290 (347)
T 3rhw_A 219 QLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGIN----SQLPPVSYIKAIDVWIGACMTFIFCA 290 (347)
T ss_dssp HTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHH----HTSCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred EeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHH----hhCCCccceeHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhcccCC---------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 006110 351 VELLYMSAVLSKIAEG---------GWLPLAFASVFLCVMYIWNYGSVLKYRSEVRE 398 (661)
Q Consensus 351 id~~f~sanl~Kv~~G---------GW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~ 398 (661)
+=-.-+..++.+-... -++-+..--+++.+.-.|.+.+.-..+++.++
T Consensus 291 lle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~n~~~~~~~~~~~~~~~~ 347 (347)
T 3rhw_A 291 LLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHHHHHHHH 347 (347)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Done!