Query 006110
Match_columns 661
No_of_seqs 169 out of 831
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 25.9 14 0.001 33.3 2.2 120 196-328 11-132 (173)
2 d2bm3a1 b.2.2.2 (A:5-166) Scaf 23.2 10 0.00074 33.9 0.7 13 133-145 40-52 (162)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 16.2 45 0.0033 20.9 2.4 20 367-386 5-24 (27)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 12.4 33 0.0024 25.4 1.1 39 198-238 16-54 (57)
5 d1jb0i_ f.23.17.1 (I:) Subunit 8.1 13 0.00097 25.4 -2.3 19 281-299 13-31 (38)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 7.2 99 0.0072 24.2 2.3 26 465-490 57-82 (103)
7 d3cx5d2 f.23.11.1 (D:261-307) 7.1 1.6E+02 0.011 20.9 3.0 22 319-340 14-36 (47)
8 d1f2qa2 b.1.1.4 (A:86-174) IgE 6.7 1.1E+02 0.0082 22.8 2.3 29 464-492 47-75 (89)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 6.2 3.6E+02 0.026 26.5 6.6 85 313-397 347-434 (509)
10 d1iwpg_ a.23.2.1 (G:) Diol deh 6.1 14 0.001 32.3 -4.0 22 634-655 66-87 (138)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=25.94 E-value=14 Score=33.26 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=68.4
Q ss_pred hHHHHHhhccc--hhhhccCcccccccccccccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCcceeEEeC
Q 006110 196 FPCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHT 273 (661)
Q Consensus 196 ~P~L~L~Y~GQ--gA~Ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~ISg~FSl~~Qai~Lg~~Pr~~i~hT 273 (661)
+|-|++|.+|+ .|+++++=|+.-+-+-. =..+.|+ ++-.+.-++||+.. ++-+++++|.+-+-+.
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~~--- 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRDW--- 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSSH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchhH---
Confidence 34555555554 45666544433321111 1256666 67778888999874 8889999995432111
Q ss_pred CCccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHHHH
Q 006110 274 SRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 328 (661)
Q Consensus 274 S~~~~GQIYiP~vNw~Lm~~~i~vv~~F~~s~~l~~AYGiAVt~~M~iTT~L~~~ 328 (661)
-+...-++.+-.+|-+.+...+.....+.....++-+=|++...+|++.+++=..
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345677777877666655555555555556555566666555555554333
No 2
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=23.21 E-value=10 Score=33.94 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=7.5
Q ss_pred ccCcceeeecChH
Q 006110 133 KYDISVVRAFNPI 145 (661)
Q Consensus 133 ~~~p~Vl~AlnP~ 145 (661)
+|||.||+|+||.
T Consensus 40 KYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 40 VYDPKVLMAVDPE 52 (162)
T ss_dssp ECCTTTEEEECTT
T ss_pred eeCHHHhcccccC
Confidence 4566666666554
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.24 E-value=45 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHHhh
Q 006110 367 GWLPLAFASVFLCVMYIWNY 386 (661)
Q Consensus 367 GW~pl~ia~~~~~iM~~W~~ 386 (661)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777778888854
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.38 E-value=33 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHhhccchhhhccCcccccccccccccCcchHHHHHHHH
Q 006110 198 CLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 238 (661)
Q Consensus 198 ~L~L~Y~GQgA~Ll~~p~~~~npFf~~~P~~~~~P~~vlAt 238 (661)
++++--++=+.|+.++.+. |.-|.++|+.++|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 3444444556677776543 33499999999997765544
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.14 E-value=13 Score=25.43 Aligned_cols=19 Identities=26% Similarity=0.738 Sum_probs=14.7
Q ss_pred cccchHHHHHHHHhheeeE
Q 006110 281 IYIPVINWFLMIMCVVVVS 299 (661)
Q Consensus 281 IYiP~vNw~Lm~~~i~vv~ 299 (661)
|.||.|-|++-+.++.+..
T Consensus 13 I~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7899999998877665543
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.21 E-value=99 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 006110 465 EERFLFRRVGPKDYHMFRCVTRYGYK 490 (661)
Q Consensus 465 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 490 (661)
+..+.|..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45788888888888999999998764
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.07 E-value=1.6e+02 Score=20.91 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHH-HHHHhcchHH
Q 006110 319 MLVSSTLVTIVM-LLIWQTNLLL 340 (661)
Q Consensus 319 M~iTT~L~~~v~-~~~w~~~~~~ 340 (661)
|++.++|+.+.. ...|+|..+.
T Consensus 14 ~~i~s~l~~~~~y~KR~kWs~lK 36 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKFKWAGIK 36 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 444454444433 4567776654
No 8
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.66 E-value=1.1e+02 Score=22.85 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCCCcEEEEEEEEeeecc
Q 006110 464 LEERFLFRRVGPKDYHMFRCVTRYGYKDV 492 (661)
Q Consensus 464 ~~eR~~v~~~~~~~~~~~r~~~ryGy~d~ 492 (661)
....+.+..+...+.|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44678888888777899999999887554
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.18 E-value=3.6e+02 Score=26.48 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHhHhcccC--CccHHHHHHHHHHHHHHHHhhhHH
Q 006110 313 IAEVGVMLVSSTLVTIVML-LIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAE--GGWLPLAFASVFLCVMYIWNYGSV 389 (661)
Q Consensus 313 iAVt~~M~iTT~L~~~v~~-~~w~~~~~~~~~~~~~f~~id~~f~sanl~Kv~~--GGW~pl~ia~~~~~iM~~W~~G~~ 389 (661)
.+.+....+.-..+..+.- ..|+.++...+..+++++..=+.+++.+.....| .+=+.+.+.+.+-.+...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHh
Q 006110 390 LKYRSEVR 397 (661)
Q Consensus 390 ~~~~~~~~ 397 (661)
+..+...+
T Consensus 427 r~~~di~~ 434 (509)
T d2a65a1 427 KAWEEINR 434 (509)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
No 10
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.06 E-value=14 Score=32.26 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHhccccccccccCCCCEEEE
Q 006110 634 LRRNCRAGAANMSVPHMNILQV 655 (661)
Q Consensus 634 LrrN~r~~~~~l~IP~~rlvEv 655 (661)
|.+|+|++.+.-.||.+||+|+
T Consensus 66 la~Nf~RAAELt~vPD~rvLei 87 (138)
T d1iwpg_ 66 VARNFRRAAELIAIPDERILAI 87 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcccCChHHHHHH
Done!